BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044402
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEM 79
KD N PL+ A N ++ V LLE +A + N +T P+HLA +NGH++V+ +
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT--PLHLAARNGHLEVVKLL 87
Query: 80 LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS 116
L+ +G LH +NGH+ +VK +++
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 25 NENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
N PL+ A N ++ V LLE +A + N +T P+HLA +NGH++V+ +L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT--PLHLAARNGHLEVVKLLLEAG 58
Query: 84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
+G LH +NGH+ +VK +++ + DK
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
WN PL+ A + LL+ G SA +++ + P+HLA + GH +++ +L KQ
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
SG LH V + GHV + +IK
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 11 FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTL---YPIHLA 67
+++ K K ++ PL+ A + V LLE N + N+ T P+H+A
Sbjct: 65 YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP----NLATTAGHTPLHIA 120
Query: 68 CKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
+ GHV+ ++ +L+K+ +T G+ LH K G V + + +++
Sbjct: 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM 122
P+H A + GH ++ +L+ P T +G+ LH + GHV V A+++ + M
Sbjct: 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 123 DK 124
K
Sbjct: 143 TK 144
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A ++ V LLE A K P+H+A K G V+V +L++ P
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 89 VTNSGYNILHFVVKNGHVNMVKAII 113
+G LH V + ++++VK ++
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLL 199
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A+ ++ V LL+ G S N+K P+H+A + GH +V +L+ +
Sbjct: 17 PLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIK 114
LH + GH NMVK +++
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLE 101
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A + V LL + + N L P+HL + GHV V ++K
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIK 114
T GY LH G++ +VK +++
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQ 332
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
P+H+A G++K++ +L+ Q T GY+ LH + GH ++V ++K
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPM 87
PL+ A +R LLE + H +A N L P+H+A + ++ ++ +L + P
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 88 FVTNSGYNILHFVVKNGHVNMVKAIIK 114
+GY LH K V + +++++
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Score = 32.3 bits (72), Expect = 0.074, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKT---LYPIHLACKNGHVKVMVEMLKKQHC 85
PL+ A+ I+ V FLL+ H A + N KT P+H A + GH ++ +LK
Sbjct: 314 PLHVASHYGNIKLVKFLLQ---HQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 86 PMFVTNSGYNILHFVVKNGHVNMVKAIIKISE 117
P V++ G L + G++++ + +++
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
L P+H+A GH+ ++ +L++ P LH + GH + K +++
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A SN ++ V LL+ NG ++ + P+HLA GH++++ +LK
Sbjct: 50 PLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA 108
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIK 114
N G+ LH K GH+ +V+ ++K
Sbjct: 109 YDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 91 NSGYNILHFVVKNGHVNMVKAIIK 114
N GY LH NGH+ +V+ ++K
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLK 68
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + PL++A N + V LL G + P+H A +NGH +++ +L K
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 83 QHCPMFVTNSGYNILHFVVKNGHVNMVKAII-KISETNIS 121
P + G LH+ +NGH +VK ++ K ++ N S
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 11 FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN 70
++++ KD + PL++A N + V LL G + P+H A +N
Sbjct: 55 LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAEN 113
Query: 71 GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
GH +++ +L K P + G L ++G+ +VK + K
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 67 ACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
A +NG+ + ++L+ P + G LH+ +NGH +VK ++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL 57
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 25 NENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
N PL+ A N ++ V LLE +A + N +T P+HLA +NGH++V+ +L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT--PLHLAARNGHLEVVKLLLEAG 58
Query: 84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS 116
+G LH +NGH+ +VK +++
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEM 79
KD N PL+ A N ++ V LLE +A + N +T P+HLA +NGH++V+ +
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT--PLHLAARNGHLEVVKLL 87
Query: 80 LK 81
L+
Sbjct: 88 LE 89
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM 122
P+HLA +NGH++V+ +L+ +G LH +NGH+ +VK +++ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 123 DK 124
DK
Sbjct: 65 DK 66
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
D + PL+ A N + V LL +A + + KT P+HLA +NGH +V+ +L
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT--PLHLAAENGHKEVVKLLLS 91
Query: 82 KQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
+ P + G LH +NGH +VK ++
Sbjct: 92 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 11 FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACK 69
++++ KD + PL+ A N + V LL +A + + KT P+HLA +
Sbjct: 55 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT--PLHLAAE 112
Query: 70 NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
NGH +V+ +L + P + G L ++G+ +VK + K
Sbjct: 113 NGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEM 79
KD + PL+ A ++ V LL+ + + K Y P+HLA + GH++++ +
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 80 LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
LK GY LH + GH+ +V+ ++K + DK
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEM 79
KD + PL+ A ++ V LL+ + + K Y P+HLA + GH++++ +
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 80 LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
LK GY LH + GH+ +V+ ++K + DK
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEM 79
KD + PL+ A ++ V LL+ + + K Y P+HLA + GH++++ +
Sbjct: 42 AKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 80 LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
LK GY LH + GH+ +V+ ++K + DK
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
+D+ PL+ A ++ V LL+ NG + + P+HLA + GH+++ VE+L
Sbjct: 42 ARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEI-VEVL 99
Query: 81 KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
K + ++S G+ LH K GH+ +V+ ++K
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A ++ V LL+ NG + P+HLA K GH+++ VE+L K +
Sbjct: 83 PLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEI-VEVLLKNGADVN 140
Query: 89 VTNS-GYNILHFVVKNGHVNMVKAIIKI 115
+ G + NG+ ++ + + K+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
DW + PL+ A ++ V LL+ N P+HLA NGH+++ VE+L K
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGAT-PLHLAADNGHLEI-VEVLLK 101
Query: 83 QHCPMFVTN-SGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
+ + G+ LH +GH+ +V+ ++K + DK
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A N ++ V LL+ +G + + P+HLA +GH+++ VE+L K +
Sbjct: 83 PLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEI-VEVLLKYGADVN 140
Query: 89 VTNS-GYNILHFVVKNGHVNMVKAIIKI 115
+ G + NG+ ++ + + K+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 19 WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVE 78
W +KD N PL+ A N + V LL G + P+HLA KNGH +++
Sbjct: 4 WGSKD--GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 79 MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVK 110
+L K + G H KNGH +VK
Sbjct: 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
P+H A KNGH + + ++L K + G LH KNGH +VK ++
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
L+ A+ I V +LL+ NG + P+H AC +GH+KV VE+L + V
Sbjct: 14 LHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKV-VELLLQHKA--LV 69
Query: 90 TNSGY---NILHFVVKNGHVNMVKAII 113
+GY + LH KNGHV++VK ++
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 56 HNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
H +TL +H+A G + + +L+ P ++G+ LH +GH+ +V+ +++
Sbjct: 8 HRGETL--LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEMLK 81
DW PL+ +N ++ + LL+ + + + K+ + P+HLA GH++++ +LK
Sbjct: 44 DWFGITPLHLVVNNGHLEIIEVLLKY--AADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Query: 82 KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
+ GY LH ++GH+ +V+ ++K + DK
Sbjct: 102 YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
+D + PL+ A ++ V LL+ NG + P+HLA K GH+++ VE+L
Sbjct: 42 AEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEI-VEVL 99
Query: 81 KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
K + ++ G LH GH+ +V+ ++K + DK
Sbjct: 100 LKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM 122
P+H A + GH+ ++V+++K P + G + +H + GH ++V +I + M
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 123 DK 124
D+
Sbjct: 139 DQ 140
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + PL+ A N + + V LL G + P+H A +NGH +V+ ++ K
Sbjct: 34 DSDGRTPLHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 83 QHCPMFVTNSGYNILHFVVKNGHVNMVKAII-KISETNIS 121
+ G LH +NGH +VK +I K ++ N S
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + PL++A + + + LL G + P+H A K GH K +V++L
Sbjct: 34 DSDGRTPLHYAAKEGH-KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH-KEIVKLLIS 91
Query: 83 QHCPMFVTNS-GYNILHFVVKNGHVNMVKAII-KISETNIS 121
+ + +S G LH+ K GH +VK +I K ++ N S
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
L P+HLA NG +++ VE+L K + ++S G LH +GH+ +V+ ++K
Sbjct: 40 LTPLHLAAANGQLEI-VEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A + ++ V LL+ +G ++ P+HLA GH++++ +LK
Sbjct: 50 PLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA 108
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
+G LH GH+ +V+ ++K + DK
Sbjct: 109 FDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
L P+HLA +GH+++ VE+L K + + G+ LH GH+ +V+ ++K
Sbjct: 48 LTPLHLAAVSGHLEI-VEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A ++ V LL+ G ++ P+HLA GH+++ VE+L K +
Sbjct: 83 PLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEI-VEVLLKYGADVN 140
Query: 89 VTNS-GYNILHFVVKNGHVNMVKA 111
+ G + NG+ ++ K+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAKS 164
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A ++ V LL+ NG + + P+HLA GH++V VE+L K +
Sbjct: 50 PLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEV-VEVLLKNGADVN 107
Query: 89 VTN-SGYNILHFVVKNGHVNMVKAIIK 114
+ +G+ LH GH+ +V+ ++K
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTL--YPIHLACKNGHVKVMVE 78
+D + PL+ A ++ V LL+ H A + + P+HLA GH+++ VE
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLK---HGADVNAADKMGDTPLHLAALYGHLEI-VE 97
Query: 79 MLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
+L K + T++ G+ LH GH+ +V+ ++K + DK
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 27 NIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP 86
+ PL+ A ++ V LL+ NG + P+HLA GH+++ VE+L K
Sbjct: 81 DTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEI-VEVLLKYGAD 138
Query: 87 MFVTNS-GYNILHFVVKNGHVNMVKAIIKI 115
+ + G + NG+ ++ + + K+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKN 103
+L NG H+ + P+HLA GH ++ VE+L K + ++ G+ LH N
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEI-VEVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 104 GHVNMVKAIIK 114
GH+ +V+ ++K
Sbjct: 91 GHLEIVEVLLK 101
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
P+HLA NGH+++ VE+L K + ++ G LH GH+ +V+ ++K
Sbjct: 83 PLHLAADNGHLEI-VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 16 VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKV 75
V T W PL+ A N ++ V LL+ G + L P+HLA GH+++
Sbjct: 73 VNARDTDGW---TPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEI 128
Query: 76 MVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKI 115
VE+L K + + G + NG+ ++ + + K+
Sbjct: 129 -VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKISETNIS 121
P+HLA K GH+++ VE+L K + ++S G LH GH+ +V+ +++ +
Sbjct: 50 PLHLAAKRGHLEI-VEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 122 MDK 124
DK
Sbjct: 109 QDK 111
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A ++ V LL+ NG ++ P+HLA GH++++ +LK
Sbjct: 50 PLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
++G LH GH+ +V+ ++K + DK
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A ++ V LL+ NG + + P+HLA GH+++ VE+L K +
Sbjct: 83 PLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEI-VEVLLKYGADVN 140
Query: 89 VTNS-GYNILHFVVKNGHVNMVKAIIKI 115
+ G + NG+ ++ + + K+
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A + + LL+ +G +A N P+HLAC+ GH +V+ +L P
Sbjct: 89 PLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK 147
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIK 114
SG L + GH +V +++
Sbjct: 148 KDLSGNTPLIYACSGGHHELVALLLQ 173
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMV 77
++ ++ +PL+ A + + V LL+ N N K L P+ AC GH +++
Sbjct: 114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP----NKKDLSGNTPLIYACSGGHHELVA 169
Query: 78 EMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
+L+ N G LH V HV +V+ ++
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A + ++ V LL+ +G ++ P+HLA GH++++ +LK
Sbjct: 50 PLHLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Query: 89 VTNSGYNILHFVVKNGHVNMVKAIIK 114
+ + G LH K G++ +V+ ++K
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+GN L + R KD N ++ A ++ + LLE IE N
Sbjct: 47 LGNPEIARRLLL--RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 61 LYPIHLACKNGHVKVMVEMLKK 82
L P+HLA K GH++V VE L K
Sbjct: 105 L-PLHLAAKEGHLRV-VEFLVK 124
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNIS 121
IH A + G + + +L+ Q N G LH K GH+ +V+ ++K + +N+
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHS--AIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP 86
PL+ A N ++ V LL+ NG A++H + P+ LA GH+++ VE+L K
Sbjct: 50 PLHLAAFNGHLEIVEVLLK-NGADVNAVDH--AGMTPLRLAALFGHLEI-VEVLLKNGAD 105
Query: 87 MFVTN-SGYNILHFVVKNGHVNMVKAIIK 114
+ + G+ LH GH+ +V+ ++K
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG 104
+L NG + P+HLA NGH++++ +LK V ++G L G
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 105 HVNMVKAIIK 114
H+ +V+ ++K
Sbjct: 92 HLEIVEVLLK 101
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL A ++ V LL+ NG ++++ P+HLA GH+++ VE+L K +
Sbjct: 83 PLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEI-VEVLLKNGADVN 140
Query: 89 VTNS-GYNILHFVVKNGHVNMVKAIIKI 115
+ G + NG+ ++ + + K+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
L P+HLA + GH++++ +LK N G LH GH+ +V+ ++K
Sbjct: 48 LTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
L P+HLA N H+++ VE+L K + ++ G LH V GH+ +V+ ++K
Sbjct: 48 LTPLHLAAMNDHLEI-VEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKISETNIS 121
P+HLA K GH+++ VE+L K + ++ G LH GH+ +V+ +++ +
Sbjct: 50 PLHLAAKRGHLEI-VEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 122 MDK 124
DK
Sbjct: 109 QDK 111
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A + ++ V LL+ +G +I P+HLA GH+++ VE+L K +
Sbjct: 50 PLHLAATYGHLEIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEI-VEVLLKHGADVN 107
Query: 89 VTNS-GYNILHFVVKNGHVNMVKAIIK 114
++ G LH GH+ +V+ ++K
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG 104
+L NG + L P+HLA GH++++ +LK + G LH G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 105 HVNMVKAIIK 114
H+ +V+ ++K
Sbjct: 92 HLEIVEVLLK 101
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVEML 80
D ++ PL+ A +R V LL+ H A H + L P+H AC GH +V +L
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVTELLL 111
Query: 81 KKQHC 85
K C
Sbjct: 112 KHGAC 116
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 40 RGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILH 98
+ V LL G + E N + P+H+A + H VM E+L K M +S G LH
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALH 285
Query: 99 FVVKNGHVNMVKAII 113
GH+ + ++
Sbjct: 286 RAALAGHLQTCRLLL 300
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG 104
+L NG A ++ P+H+A GH++++ +L+ V +G LH G
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 105 HVNMVKAIIK 114
H+ +V+ ++K
Sbjct: 80 HLEIVEVLLK 89
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
D N PL+ A S ++ V LL+ G + + P++LA GH++++ +LK
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
PL+ A + ++ V LL+ +G +I P+HLA GH+++ VE+L K +
Sbjct: 50 PLHLAATYGHLEIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEI-VEVLLKHGADVN 107
Query: 89 VTNS-GYNILHFVVKNGHVNMVKAIIK 114
++ G LH GH+ +V+ ++K
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG 104
+L NG + L P+HLA GH++++ +LK + G LH G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 105 HVNMVKAIIK 114
H+ +V+ ++K
Sbjct: 92 HLEIVEVLLK 101
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKISETNIS 121
P+HLA K GH+++ VE+L K + + G LH GH+ +V+ +++ +
Sbjct: 50 PLHLAAKRGHLEI-VEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 122 MDK 124
DK
Sbjct: 109 QDK 111
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNIS 121
IH A + G + + +L+ Q N G LH K GH+ +V+ ++K + +N+
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+GN L + R KD ++ A ++ + LLE IE N
Sbjct: 47 LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGN 104
Query: 61 LYPIHLACKNGHVKVMVEMLKK 82
L P+HLA K GH++V VE L K
Sbjct: 105 L-PLHLAAKEGHLRV-VEFLVK 124
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNIS 121
IH A + G + + +L+ Q N G LH K GH+ +V+ ++K + +N+
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+GN L + R KD ++ A + + LLE IE N
Sbjct: 47 LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGN 104
Query: 61 LYPIHLACKNGHVKVMVEMLKK 82
L P+HLA K GH++V VE L K
Sbjct: 105 L-PLHLAAKEGHLRV-VEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNIS 121
IH A + G + + +L+ Q N G LH K GH+ +V+ ++K + +N+
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+GN L + R KD ++ A ++ + LLE IE N
Sbjct: 47 LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 61 LYPIHLACKNGHVKVMVEMLKK 82
L P+HLA K GH++V VE L K
Sbjct: 105 L-PLHLAAKEGHLRV-VEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNIS 121
IH A + G + + +L+ Q N G LH K GH+ +V+ ++K + +N+
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+GN L + R KD ++ A ++ + LLE IE N
Sbjct: 47 LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 61 LYPIHLACKNGHVKVMVEMLKK 82
L P+HLA K GH++V VE L K
Sbjct: 105 L-PLHLAAKEGHLRV-VEFLVK 124
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVT-NSGYNILHFVVKNGHVNMVKAIIK 114
P+HLA GH+++ VE+L K + T N+G LH H+ +V+ ++K
Sbjct: 50 PLHLAAMLGHLEI-VEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
L A S Y V LL+ G E++ P+ A HVK + +L+ P
Sbjct: 73 LSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 90 TNSGYNILHFVVKNGHVNMVKAI 112
T+SGYN + V G+ ++ + I
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVI 154
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN 57
DWN PL +A +++ V LLE IE +
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
L A S Y V LL+ G E++ P+ A HVK + +L+ P
Sbjct: 71 LSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 90 TNSGYNILHFVVKNGHVNMVKAI 112
T+SGYN + V G+ ++ + I
Sbjct: 130 TDSGYNSMDLAVALGYRSVQQVI 152
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIE 55
DWN PL +A +++ V LLE IE
Sbjct: 97 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
L A S Y V LL+ G E++ P+ A HVK + +L+ P
Sbjct: 89 LSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 90 TNSGYNILHFVVKNGHVNMVKAI 112
T+SGYN + V G+ ++ + I
Sbjct: 148 TDSGYNSMDLAVALGYRSVQQVI 170
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIE 55
DWN PL +A +++ V LLE IE
Sbjct: 115 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT---LYPIHLACKNGHVKVMV 77
T DW PL+ A + LL + + + +T P+H+A GH + V
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANI-V 83
Query: 78 EMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
E+L K + + LH+ ++ H +V+ +IK
Sbjct: 84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVEML 80
+ ++ PL+FA + V +LL+ H A H + L P+H AC GH +V E+L
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQ---HGADVHAKDKGGLVPLHNACSYGHYEV-AELL 98
Query: 81 KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
K + V + + LH G + K +++
Sbjct: 99 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
L P++LA +GH++++ +LK V G+ LH GH+ + + ++K
Sbjct: 48 LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVEML 80
+ ++ PL+FA + V +LL+ H A H + L P+H AC GH +V E+L
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQ---HGADVHAKDKGGLVPLHNACSYGHYEV-AELL 94
Query: 81 KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
K + V + + LH G + K +++
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVEML 80
+ ++ PL+FA + V +LL+ H A H + L P+H AC GH +V E+L
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQ---HGADVHAKDKGGLVPLHNACSYGHYEV-AELL 96
Query: 81 KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
K + V + + LH G + K +++
Sbjct: 97 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVE 78
KD + IPL+++ S FLL + ++ + P H+AC G+++V+
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 79 MLKKQHCPMF--VTNSGYNILHFVV 101
+ + P +TN G LH V
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAV 115
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+G F S F+I + KD IPL+ A S ++ + L L G SA+ K
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQ 173
Query: 61 LY-PIHLACKNGHVKVMVEMLKK 82
+ P+ A GH V +++K
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVE 78
KD + IPL+++ S FLL + ++ + P H+AC G+++V+
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 79 MLKKQHCPMF--VTNSGYNILHFVV 101
+ + P +TN G LH V
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAV 115
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+G F S F+I + KD IPL+ A S ++ + L L G SA+ K
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQ 173
Query: 61 LY-PIHLACKNGHVKVMVEMLKK 82
+ P+ A GH V +++K
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEK 196
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH--NIKTLYPIHLACKNGHVKVMVE 78
KD + IPL+++ S FLL + ++ + P H+AC G+++V+
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 79 MLKKQHCPMF--VTNSGYNILHFVV 101
+ + P +TN G LH V
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAV 115
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 1 MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT 60
+G F S F+I + KD IPL+ A S ++ + L L G SA+ K
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQ 173
Query: 61 LY-PIHLACKNGHVKVMVEMLKK 82
+ P+ A GH V +++K
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEK 196
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV-TNSGYNILHFVVKN 103
+L NG ++ K P+HLA H+++ VE+L K + N G LH
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEI-VEVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 104 GHVNMVKAIIK 114
GH+ +V+ ++K
Sbjct: 91 GHLEIVEVLLK 101
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + L++A S + V FLL+L G + + P+H+A G +++ +L K
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 83 QHCPMFVTNSGYNILHFVV-KNGH 105
V +G LH+ KN H
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRH 120
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + L++A S + V FLL+L G + + P+H+A G +++ +L K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 83 QHCPMFVTNSGYNILHFVV-KNGH 105
V +G LH+ KN H
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRH 119
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 19 WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVE 78
+K + N+ PL+ A ++ +C +L G + + P+ A +N H++ +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHV-DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 79 MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI 120
++K G LH K GH +V+ ++ + ++
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKIS 116
P+HLA + GH+++ VE+L K + + G + NG+ ++ + + K +
Sbjct: 38 PLHLAAREGHLEI-VEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 92 SGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
GY LH + GH+ +V+ ++K + DK
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM 122
P+H A K G++ + E L + + +G L++ GH ++V+ + ++ NI +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL--FTQPNIEL 133
Query: 123 DK 124
++
Sbjct: 134 NQ 135
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 45 LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG 104
+L NG + P+HLA +NGH++V+ +L+ G + NG
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Query: 105 HVNMVK 110
+ ++ +
Sbjct: 102 NEDLAE 107
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 93 GYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
G LH +NGH+ +VK +++ + DK
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + L++A S + V FLL+L G + + P+H+A G +++ +L K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 83 QHCPMFVTNSGYNILHFVV-KNGH 105
V +G LH+ KN H
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRH 119
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 63 PIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVK 110
P+HLA +NGH++V V++L + + + G + NG+ ++ +
Sbjct: 42 PLHLAARNGHLEV-VKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAE 89
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 63 PIHLACKNG---HVKVMVEMLKKQHCPMFVTNSGYN---ILHFVVKNGHVNMVKAIIKIS 116
P+HLAC+ G V V+ + H + + YN LH +G++ +V+ ++ +
Sbjct: 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
D + L++A S + V FLL+L G + + P+H+A G +++ +L K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 83 QHCPMFVTNSGYNILHFVV-KNGH 105
V +G LH+ KN H
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRH 119
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISE 117
IH+A + G + +++ P G LH K G V+ K + + E
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE 77
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 63 PIHLACKNG---HVKVMVEMLKKQHCPMFVTNSGYN---ILHFVVKNGHVNMVKAIIKIS 116
P+HLAC+ G V V+ + H + + YN LH +G++ +V+ ++ +
Sbjct: 78 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 137
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 44 FLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
FL+ N A+ +N +++ +N H+ V ++L+++HC +F+
Sbjct: 155 FLINTNSELALMYNDESVL------ENHHLAVGFKLLQEEHCDIFM 194
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XLX|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XOT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1XOT|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1Y2H|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2H|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
Length = 398
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 44 FLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
FL+ N A+ +N +++ +N H+ V ++L+++HC +F+
Sbjct: 155 FLINTNSELALMYNDESVL------ENHHLAVGFKLLQEEHCDIFM 194
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509.
pdb|3KKT|B Chain B, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509
Length = 398
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 44 FLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
FL+ N A+ +N +++ +N H+ V ++L+++HC +F+
Sbjct: 155 FLINTNSELALMYNDESVL------ENHHLAVGFKLLQEEHCDIFM 194
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 70 NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVV 126
N HV E+ ++HC FVT+ G L F + I ++S+ + ++ ++
Sbjct: 218 NAHVAAYPEVDWRKHCANFVTSLG---LSFNAYTTQIEPHDGIAEVSQIXVRINNIL 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,667,377
Number of Sequences: 62578
Number of extensions: 127691
Number of successful extensions: 602
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 164
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)