BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044404
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1
           SV=1
          Length = 211

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 8   STLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAK 67
           + +PKFG+WD N+P++ADG++ +F K  EE+  G+    NV+  S+  T   H    +  
Sbjct: 146 TVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA----NVSGSSRTPT---HQSSRNPN 198

Query: 68  KKWFCCVF 75
               CC F
Sbjct: 199 NTSSCCCF 206


>sp|Q1KXX1|RPOC1_HELAN DNA-directed RNA polymerase subunit beta' OS=Helianthus annuus
           GN=rpoC1 PE=3 SV=2
          Length = 689

 Score = 32.3 bits (72), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 18  VNDPATA---DGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKKWFCCV 74
           + DP +A   D  S +++  S  +RG      N  +R  Y+ E N++K    K+ +FC  
Sbjct: 524 IGDPISAPTQDMLSGLYVLTSGNRRGICVNRYNPCNRRNYQNEDNNYKYTKKKEPFFCNA 583

Query: 75  F 75
           +
Sbjct: 584 Y 584


>sp|B2LMI1|RPOC1_GUIAB DNA-directed RNA polymerase subunit beta' OS=Guizotia abyssinica
           GN=rpoC1 PE=3 SV=1
          Length = 696

 Score = 32.3 bits (72), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 18  VNDPATA---DGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKKWFCCV 74
           + DP +A   D  S +++  S  +RG      N  +R  Y+ E N++K    K+ +FC  
Sbjct: 531 IGDPISAPTQDMLSGLYVLTSGNRRGICVNRYNPCNRRNYQNEDNNYKYTKKKEPFFCNA 590

Query: 75  F 75
           +
Sbjct: 591 Y 591


>sp|Q56P12|RPOC1_LACSA DNA-directed RNA polymerase subunit beta' OS=Lactuca sativa
           GN=rpoC1 PE=3 SV=2
          Length = 689

 Score = 32.3 bits (72), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 18  VNDPATA---DGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQYSAKKKWFC 72
           + DP +A   D  S +++  S  +RG      N  +R  Y+ E N++K    K+ +FC
Sbjct: 524 IGDPISAPTQDMLSGLYVLTSGNRRGICVNRYNPCNRRNYQNEDNNYKYTKKKEPFFC 581


>sp|Q7ZW57|CCD89_XENLA Coiled-coil domain-containing protein 89 OS=Xenopus laevis
           GN=ccdc89 PE=1 SV=2
          Length = 334

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 7   GSTLPKFGEWDVNDPATADGFSFVFIKASEEKRGGSAAAGNVTSRSKYKTETNHHKQ 63
           G T  +  E ++N     D  S    +   EKR GS   G++T R K   ET H  Q
Sbjct: 148 GDTETRLKEQEMNYGRKLDTLSAKVEQLEGEKRTGSLELGDLTHRLKVSEETRHEAQ 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.127    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,960,685
Number of Sequences: 539616
Number of extensions: 872081
Number of successful extensions: 1849
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)