Query 044404
Match_columns 76
No_of_seqs 103 out of 141
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nud_C RIN4, RPM1-interacting 99.9 3.1E-23 1.1E-27 117.0 0.6 34 5-38 2-35 (35)
2 2ys2_A Cytoplasmic tyrosine-pr 46.5 9.9 0.00034 21.9 1.6 17 59-75 14-30 (50)
3 2e6i_A Tyrosine-protein kinase 40.5 13 0.00046 22.3 1.6 17 59-75 14-30 (64)
4 2lk0_A RNA-binding protein 5; 28.4 11 0.00038 19.3 -0.2 9 11-19 1-9 (32)
5 2lul_A Tyrosine-protein kinase 26.5 24 0.00083 22.8 1.2 15 61-75 131-145 (164)
6 1ac0_A Glucoamylase; hydrolase 22.3 33 0.0011 20.8 1.2 13 8-20 27-39 (108)
7 1btk_A Bruton'S tyrosine kinas 17.1 30 0.001 22.6 0.1 18 58-75 139-156 (169)
8 2z0b_A GDE5, KIAA1434, putativ 16.3 34 0.0012 21.9 0.2 12 9-20 30-41 (131)
9 3rh0_A Arsenate reductase; oxi 15.8 23 0.00079 23.3 -0.7 23 13-37 115-137 (148)
10 4dkx_A RAS-related protein RAB 15.7 44 0.0015 22.3 0.7 11 64-74 199-209 (216)
No 1
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=99.86 E-value=3.1e-23 Score=116.98 Aligned_cols=34 Identities=44% Similarity=0.985 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHH
Q 044404 5 GHGSTLPKFGEWDVNDPATADGFSFVFIKASEEK 38 (76)
Q Consensus 5 ~~~~~vPkFG~WD~~~pasa~~yTviF~KareeK 38 (76)
+++++|||||+||++||+|+++|||||+||||||
T Consensus 2 ~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K 35 (35)
T 2nud_C 2 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35 (35)
T ss_dssp -------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred CCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence 5789999999999999999999999999999997
No 2
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=46.53 E-value=9.9 Score=21.87 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=11.6
Q ss_pred CCCCCCCCCceeEEeec
Q 044404 59 NHHKQYSAKKKWFCCVF 75 (76)
Q Consensus 59 ~~~~~~~~~kKwfCc~~ 75 (76)
.+++.--...+|.||.+
T Consensus 14 ~YHPg~~~~g~W~CC~q 30 (50)
T 2ys2_A 14 KYHSGFFVDGKFLCCQQ 30 (50)
T ss_dssp CCCSSCEETTEESSSCC
T ss_pred hcCCCcccCCeECCCCC
Confidence 33444445689999985
No 3
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.54 E-value=13 Score=22.31 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=11.9
Q ss_pred CCCCCCCCCceeEEeec
Q 044404 59 NHHKQYSAKKKWFCCVF 75 (76)
Q Consensus 59 ~~~~~~~~~kKwfCc~~ 75 (76)
.+++.--...+|.||.+
T Consensus 14 ~yHPg~~~~GkW~CC~q 30 (64)
T 2e6i_A 14 KYHPNFWMDGKWRCCSQ 30 (64)
T ss_dssp EECSSCBCSSSBSSSCC
T ss_pred hcCCCceeCCeECCCCC
Confidence 33455556789999985
No 4
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=28.44 E-value=11 Score=19.35 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q 044404 11 PKFGEWDVN 19 (76)
Q Consensus 11 PkFG~WD~~ 19 (76)
||-|||.=.
T Consensus 1 pk~gDW~C~ 9 (32)
T 2lk0_A 1 XKFEDWLCN 9 (32)
T ss_dssp -CCSEEECT
T ss_pred CCCCCCCcC
Confidence 788999864
No 5
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=26.50 E-value=24 Score=22.75 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=10.2
Q ss_pred CCCCCCCceeEEeec
Q 044404 61 HKQYSAKKKWFCCVF 75 (76)
Q Consensus 61 ~~~~~~~kKwfCc~~ 75 (76)
++.--...+|.||.+
T Consensus 131 Hpg~~~~~~w~CC~~ 145 (164)
T 2lul_A 131 HPKFWTDGSYQCCRQ 145 (164)
T ss_dssp CCSCCCTTCCCSSSC
T ss_pred CCCcccCCeEeeCCC
Confidence 444445678999975
No 6
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=22.32 E-value=33 Score=20.80 Aligned_cols=13 Identities=23% Similarity=1.035 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 044404 8 STLPKFGEWDVND 20 (76)
Q Consensus 8 ~~vPkFG~WD~~~ 20 (76)
...|.||.||...
T Consensus 27 Gs~~~LG~W~~~~ 39 (108)
T 1ac0_A 27 GSISQLGDWETSD 39 (108)
T ss_dssp CSSSTTCSSSGGG
T ss_pred eCcHHHCCCCHHH
Confidence 4679999999753
No 7
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=17.11 E-value=30 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=11.9
Q ss_pred CCCCCCCCCCceeEEeec
Q 044404 58 TNHHKQYSAKKKWFCCVF 75 (76)
Q Consensus 58 ~~~~~~~~~~kKwfCc~~ 75 (76)
..+++.-....+|.||.+
T Consensus 139 ~~~h~~~~~~~~w~cc~~ 156 (169)
T 1btk_A 139 QKYHPCFWIDGQYLCCSQ 156 (169)
T ss_dssp SEECSSCEETTEETTTCC
T ss_pred hccCCCceeCCEeccCCC
Confidence 333455555689999974
No 8
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=16.32 E-value=34 Score=21.94 Aligned_cols=12 Identities=17% Similarity=0.720 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 044404 9 TLPKFGEWDVND 20 (76)
Q Consensus 9 ~vPkFG~WD~~~ 20 (76)
.+|.||.||...
T Consensus 30 s~~~LG~W~p~~ 41 (131)
T 2z0b_A 30 SCDALGNWNPQN 41 (131)
T ss_dssp SSGGGTTTCGGG
T ss_pred CCCcCCCCCccc
Confidence 578999999753
No 9
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=15.85 E-value=23 Score=23.31 Aligned_cols=23 Identities=9% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCceehhHHHHHH
Q 044404 13 FGEWDVNDPATADGFSFVFIKASEE 37 (76)
Q Consensus 13 FG~WD~~~pasa~~yTviF~Karee 37 (76)
|+.||..||.... .-.|.+++++
T Consensus 115 ~~~w~VpDPy~~~--~~~F~~v~d~ 137 (148)
T 3rh0_A 115 LERWSIEEPDAQG--MERMRIVRDQ 137 (148)
T ss_dssp EEEECCCCCSCCH--HHHHHHHHHH
T ss_pred eecCCcCCCCCCC--HHHHHHHHHH
Confidence 7899999997532 1245555554
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=15.67 E-value=44 Score=22.32 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCceeEEee
Q 044404 64 YSAKKKWFCCV 74 (76)
Q Consensus 64 ~~~~kKwfCc~ 74 (76)
++.+++.|||+
T Consensus 199 ~~~~~~~C~Cl 209 (216)
T 4dkx_A 199 QPVSEGGCSCL 209 (216)
T ss_dssp -----------
T ss_pred CCCCCCCCcee
Confidence 34567778887
Done!