BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044407
(702 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana
GN=FRS10 PE=2 SV=2
Length = 685
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 116/297 (39%), Gaps = 33/297 (11%)
Query: 370 PYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGD 429
PY ++ V +D N + + +Q E S+ + ++ +R H + I+ D D
Sbjct: 303 PYGLLLGVFFGIDNNGKAMLLGCVLLQDESCRSFTWALQTFVRFMRGRHPQ--TILTDID 360
Query: 430 NGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHF------FWSACRSTSATSFNK 483
G+ A+ +P + I +++ F H+ F CR+ + F +
Sbjct: 361 TGLKDAIGREMPNTNHVVFMSHIVSKLASWFSQTLGSHYEEFRAGFDMLCRAGNVDEFEQ 420
Query: 484 YMDLIHNE---SEECHDWLLQTDWSSWALFTIPKWVKCICVT----LSITDKLRNYLH-- 534
DL+ + H LL + +SW I + +T LSI L+ +
Sbjct: 421 QWDLLVTRFGLVPDRHAALLYSCRASWLPCCIREHFVAQTMTSEFNLSIDSFLKRVVDGA 480
Query: 535 ---QYLEMSIASRYVAIARLTAELFERRR-------MEVWNWYREKVTPTVREVIKDRTI 584
Q L A + A A L ++ R M + + R +TP V+++ +
Sbjct: 481 TCMQLLLEESALQVSAAASLAKQILPRFTYPSLKTCMPMEDHARGILTPYAFSVLQNEMV 540
Query: 585 DGQRFVLVE-ENGPRL-----KLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACK 635
++ + E NGP + K+ ++++ E CSC ++ SGI C H +
Sbjct: 541 LSVQYAVAEMANGPFIVHHYKKMEGECCVIWNPENEEIQCSCKEFEHSGILCRHTLR 597
>sp|B0C385|RPOC2_ACAM1 DNA-directed RNA polymerase subunit beta' OS=Acaryochloris marina
(strain MBIC 11017) GN=rpoC2 PE=3 SV=1
Length = 1330
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 329 RHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVA 378
R E EVERF+++ W TS K+ V +K NNP NSV ++A
Sbjct: 96 RGEITEVERFQKVIDTWNGTSEELKDEV-----VKNFKSNNPLNSVYMMA 140
>sp|Q3M5C8|RPOC2_ANAVT DNA-directed RNA polymerase subunit beta' OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=rpoC2 PE=3 SV=1
Length = 1355
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 328 KRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVA 378
+R E EVERF+++ W TS A K+ V +K NP NSV ++A
Sbjct: 86 QRGEITEVERFQKVIDTWNGTSEALKDEV-----VTHFKQTNPLNSVYMMA 131
>sp|P22705|RPOC2_NOSS1 DNA-directed RNA polymerase subunit beta' OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=rpoC2 PE=3 SV=2
Length = 1355
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 328 KRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVA 378
+R E EVERF+++ W TS A K+ V +K NP NSV ++A
Sbjct: 86 QRGEITEVERFQKVIDTWNGTSEALKDEV-----VTHFKQTNPLNSVYMMA 131
>sp|B2J1A0|RPOC2_NOSP7 DNA-directed RNA polymerase subunit beta' OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=rpoC2 PE=3 SV=1
Length = 1349
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 328 KRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVA 378
+R E EVERF+++ W TS A K+ V +K NP NSV ++A
Sbjct: 86 QRGEITEVERFQKVIDTWNGTSEALKDEV-----VVHFKKTNPLNSVYMMA 131
>sp|A3DBU2|RUVC_CLOTH Crossover junction endodeoxyribonuclease RuvC OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=ruvC PE=3
SV=1
Length = 162
Score = 34.3 bits (77), Expect = 3.5, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 395 VQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAV 444
+ VE+L FF KNI AL + HG G+ ++ +GID V E+ P V
Sbjct: 64 IAVEEL----FFNKNIKTALAVGHGRGVAVLAAAQSGID--VFEYTPIQV 107
>sp|B8I1A2|RUVC_CLOCE Crossover junction endodeoxyribonuclease RuvC OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=ruvC PE=3 SV=1
Length = 166
Score = 33.5 bits (75), Expect = 5.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 395 VQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAV 444
+ +E+L FF KNI AL + HG G+ ++ +GID + E+ P V
Sbjct: 64 ISIEEL----FFNKNIKTALTVGHGRGVAVLAAAKSGID--IFEYTPLQV 107
>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes
GN=MDC1 PE=3 SV=1
Length = 2171
Score = 33.1 bits (74), Expect = 7.6, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 8 GVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKAKCRRI 67
G+ R RQT K G K+T + PE +L D E+L K K R
Sbjct: 801 GIQGRGRQTVDKVMGIPKETAERVGPERGPLERETEKLLPERQTDVTGEEELTKGKQDRE 860
Query: 68 RRK-IARELFPSNSHSNEQCNRHSRTRMGCKTQMPTGRCSDDDEESQ 113
+++ +AR+ S N + R R K ++ T S++ +E Q
Sbjct: 861 QKQLLARDTQRQESDKNGESASPERDRESLKVEIET---SEEIQEKQ 904
>sp|Q6M1B4|Y002_METMP UPF0425 pyridoxal phosphate-dependent protein MMP0002
OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0002
PE=3 SV=1
Length = 354
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 307 LNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWK 366
LN KD ER ++ + E ++ EY + T + KN L K
Sbjct: 258 LNNLKDAFERAEKVDLSVFEAEKIEYKKTP-----------TGFIIKNSSEEKLIETALK 306
Query: 367 INNPYNSVMLVAAALDGNNGILPIAFCEVQVEDL-DSWVFFIKNINNALR 415
+ Y V + AA + G + + I FC E + D +V I + N+L+
Sbjct: 307 LLENYGIVTITAAGMPGASKNIRIDFCSKDAERISDEYV--INAVLNSLK 354
>sp|P83939|SCRN1_BOVIN Secernin-1 OS=Bos taurus GN=SCRN1 PE=1 SV=2
Length = 414
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 498 WLLQTDWSSWALFTIPKWVKCICVTLSITDKL 529
W+L+T WA I + VKCIC LS+T K+
Sbjct: 166 WVLETVGKYWAAEKITEGVKCICNQLSLTTKI 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,610,057
Number of Sequences: 539616
Number of extensions: 11437922
Number of successful extensions: 32261
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 32220
Number of HSP's gapped (non-prelim): 49
length of query: 702
length of database: 191,569,459
effective HSP length: 125
effective length of query: 577
effective length of database: 124,117,459
effective search space: 71615773843
effective search space used: 71615773843
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)