Query 044407
Match_columns 702
No_of_seqs 275 out of 1586
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03097 FHY3 Protein FAR-RED 100.0 5.7E-74 1.2E-78 661.0 46.4 466 160-658 71-623 (846)
2 PF10551 MULE: MULE transposas 99.8 2.6E-21 5.6E-26 168.9 9.1 90 364-457 1-93 (93)
3 PF00872 Transposase_mut: Tran 99.8 7.7E-21 1.7E-25 207.5 6.8 224 260-535 112-349 (381)
4 PF03108 DBD_Tnp_Mut: MuDR fam 99.6 7.9E-16 1.7E-20 125.6 8.6 67 160-226 1-67 (67)
5 COG3328 Transposase and inacti 99.5 8.7E-13 1.9E-17 141.7 17.4 222 260-535 98-328 (379)
6 smart00575 ZnF_PMZ plant mutat 98.8 1.1E-09 2.3E-14 72.7 1.6 28 616-643 1-28 (28)
7 PF08731 AFT: Transcription fa 98.7 7.4E-08 1.6E-12 84.0 9.0 69 169-237 1-111 (111)
8 PF03101 FAR1: FAR1 DNA-bindin 98.4 4.7E-07 1E-11 78.4 6.0 61 177-238 1-90 (91)
9 PF04434 SWIM: SWIM zinc finge 98.0 6.7E-06 1.5E-10 59.6 3.1 29 613-641 12-40 (40)
10 PF13610 DDE_Tnp_IS240: DDE do 96.1 0.0022 4.8E-08 60.2 1.3 80 357-442 1-80 (140)
11 PF10532 Plant_all_beta: Plant 96.1 0.00099 2.1E-08 58.5 -1.2 63 29-92 10-74 (114)
12 PF06782 UPF0236: Uncharacteri 95.5 0.14 3E-06 58.0 12.4 131 397-535 235-377 (470)
13 PF01610 DDE_Tnp_ISL3: Transpo 93.8 0.093 2E-06 54.1 5.4 93 360-460 1-96 (249)
14 PHA02517 putative transposase 92.7 3.1 6.6E-05 43.6 15.0 151 248-432 30-181 (277)
15 PF04684 BAF1_ABF1: BAF1 / ABF 91.4 0.37 8E-06 52.6 6.1 57 164-220 23-80 (496)
16 PF03106 WRKY: WRKY DNA -bindi 90.5 0.46 1E-05 37.6 4.3 40 197-236 20-59 (60)
17 PRK14702 insertion element IS2 89.2 23 0.0005 36.9 17.2 147 246-431 10-163 (262)
18 COG3316 Transposase and inacti 87.0 8.1 0.00018 38.7 11.3 85 356-447 69-153 (215)
19 PF00665 rve: Integrase core d 85.8 3.6 7.8E-05 36.6 7.8 77 356-435 5-82 (120)
20 PF03050 DDE_Tnp_IS66: Transpo 84.2 2.2 4.8E-05 44.5 6.4 134 260-462 18-156 (271)
21 PF04500 FLYWCH: FLYWCH zinc f 82.3 2.1 4.5E-05 33.4 4.1 46 186-235 14-62 (62)
22 smart00774 WRKY DNA binding do 79.7 2.3 5E-05 33.5 3.4 38 198-235 21-59 (59)
23 PRK09409 IS2 transposase TnpB; 78.8 30 0.00065 36.8 12.7 145 248-431 51-202 (301)
24 PF04937 DUF659: Protein of un 73.8 36 0.00079 32.4 10.5 103 356-462 32-138 (153)
25 PF13565 HTH_32: Homeodomain-l 73.6 7.3 0.00016 32.0 5.1 41 248-288 34-76 (77)
26 PRK13907 rnhA ribonuclease H; 63.1 79 0.0017 28.6 10.2 78 359-440 3-81 (128)
27 COG5431 Uncharacterized metal- 48.4 31 0.00066 30.3 4.3 61 585-649 19-88 (117)
28 PF12762 DDE_Tnp_IS1595: ISXO2 44.6 52 0.0011 30.7 5.9 69 358-433 4-87 (151)
29 COG4279 Uncharacterized conser 35.9 18 0.00038 36.9 1.2 25 614-641 123-147 (266)
30 PF13592 HTH_33: Winged helix- 27.3 93 0.002 24.3 3.8 31 261-291 3-33 (60)
31 PRK00766 hypothetical protein; 25.6 4.7E+02 0.01 26.0 9.1 89 358-446 10-128 (194)
32 PF01498 HTH_Tnp_Tc3_2: Transp 23.2 63 0.0014 26.0 2.2 36 254-290 5-40 (72)
33 PHA01346 hypothetical protein 22.7 49 0.0011 24.0 1.2 32 43-74 20-51 (53)
34 PF08766 DEK_C: DEK C terminal 22.3 1.6E+02 0.0035 22.5 4.2 38 248-285 4-43 (54)
35 PF13082 DUF3931: Protein of u 21.6 2.3E+02 0.005 21.6 4.5 27 372-398 36-62 (66)
No 1
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=100.00 E-value=5.7e-74 Score=661.01 Aligned_cols=466 Identities=14% Similarity=0.198 Sum_probs=381.7
Q ss_pred CcccccccEeCCHHHHHHHHHHHHHHcCceEEEeeecC-------eeEEEEeec--------------------------
Q 044407 160 KMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRG-------HAVSYECSD-------------------------- 206 (702)
Q Consensus 160 ~~~~~~G~~F~s~~e~~~ai~~yAi~~gf~~~~~kS~~-------~r~~~~C~~-------------------------- 206 (702)
+..+.+||+|.|.+|++++|+.||...||.+|+.++.+ ...+++|++
T Consensus 71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~ 150 (846)
T PLN03097 71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG 150 (846)
T ss_pred CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence 45579999999999999999999999999999865442 123567764
Q ss_pred --------CCCccEEEEEEEeCceeEEEeEecCccccccccccccchhhHHHHHHhhhhccCCCCCHHHHHHHHHHHhC-
Q 044407 207 --------LRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYG- 277 (702)
Q Consensus 207 --------~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~~~~r~~s~~~ia~~~~~~i~~~~~~~~~~I~~~l~~~~g- 277 (702)
.||+++|.+.+. ..+.|.|+.+..+|||++...... + ...+.+...+....+
T Consensus 151 ~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~-~-----------------~~~r~~~~~~~~~~~~ 211 (846)
T PLN03097 151 TGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAV-S-----------------EQTRKMYAAMARQFAE 211 (846)
T ss_pred cccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCcccc-c-----------------hhhhhhHHHHHhhhhc
Confidence 379999999774 557899999999999998754110 0 001111111111111
Q ss_pred ---cccCHH----HHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccEEEEEEeehhhHH
Q 044407 278 ---VVCHEA----KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSY 350 (702)
Q Consensus 278 ---~~is~~----~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f~~~F~~~~~~~~ 350 (702)
+..... ...+.|. ++.. ..+.+.|++||++++.+||+|+|.+++ |++++++++||+++.++.
T Consensus 212 ~~~v~~~~~d~~~~~~~~r~--~~~~----~gD~~~ll~yf~~~q~~nP~Ffy~~ql-----De~~~l~niFWaD~~sr~ 280 (846)
T PLN03097 212 YKNVVGLKNDSKSSFDKGRN--LGLE----AGDTKILLDFFTQMQNMNSNFFYAVDL-----GEDQRLKNLFWVDAKSRH 280 (846)
T ss_pred cccccccchhhcchhhHHHh--hhcc----cchHHHHHHHHHHHHhhCCCceEEEEE-----ccCCCeeeEEeccHHHHH
Confidence 000000 0111111 1111 234578999999999999999999999 999999999999999999
Q ss_pred HHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCch
Q 044407 351 AFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDN 430 (702)
Q Consensus 351 ~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~ 430 (702)
+|. +|+|||.+|+||++|+|++||+.++|+|+|+++++|||||+.+|+.++|.|||++|+++| .+.+|.+||||++.
T Consensus 281 ~Y~-~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd~ 357 (846)
T PLN03097 281 DYG-NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM--GGQAPKVIITDQDK 357 (846)
T ss_pred HHH-hcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh--CCCCCceEEecCCH
Confidence 997 799999999999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHhhhCCC-----chhHHHHHHHhc-cccHHHHHHHHHHHHh-hChhhhHHhccC-
Q 044407 431 GIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPT-----APVEHFFWSACR-STSATSFNKYMDLIHN-ESEECHDWLLQT- 502 (702)
Q Consensus 431 ~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~-----~~~~~~~~~~~~-a~t~~~Fe~~~~~l~~-~~~~~~~yL~~~- 502 (702)
+|.+||++|||++.|++|+|||++|+.+++.. ..+...|+.|++ +.++++|+..|..|.+ ++...++||..+
T Consensus 358 am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY 437 (846)
T PLN03097 358 AMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLY 437 (846)
T ss_pred HHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 99999999999999999999999999998863 478889999886 5799999999999976 688999999998
Q ss_pred -CccceeeeecCCCccccccCCChhhhHHHHHhh--cccccHHHHHHHHHHHHHHHHHHHHHH----------------H
Q 044407 503 -DWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ--YLEMSIASRYVAIARLTAELFERRRME----------------V 563 (702)
Q Consensus 503 -~~e~Wa~a~~~~~~~~g~~Ttn~~ES~N~~lk~--~r~lpi~~~~e~i~~kl~~~~~~r~~~----------------~ 563 (702)
.|++|+++|+++.|+.|+.||+++||+|+.|++ .+..++..|++.+...+..+.++..+. .
T Consensus 438 ~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~pi 517 (846)
T PLN03097 438 EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPL 517 (846)
T ss_pred HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHH
Confidence 899999999999999999999999999999998 577889999988866655444333221 1
Q ss_pred hhhccCCCChhHHHHHHHhhccCceeEEEecC--C--CeEEEEe---CCeeeEecc--CCCceeecCccccCCccccchh
Q 044407 564 WNWYREKVTPTVREVIKDRTIDGQRFVLVEEN--G--PRLKLTD---TRSLLFDLN--MEAQSCSCGLWQISGIPCAHAC 634 (702)
Q Consensus 564 ~~~~~~~~tp~~~k~lq~~~~~a~~~~V~~~~--~--~~~~V~~---~~~~~V~~~--l~~~tCsC~~fe~~GiPC~Hal 634 (702)
.++++.+|||.+|++||+++..+..|.+...+ + .+|.|.+ ...|.|.++ ....+|+|++|+..||||+|||
T Consensus 518 EkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaL 597 (846)
T PLN03097 518 EKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHAL 597 (846)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHH
Confidence 22333499999999999999999988886642 2 3788887 456888653 5688999999999999999999
Q ss_pred HHHHHhcCC--chhhccccccHHHHH
Q 044407 635 KGIQLIMGN--VEEYVDNMMSVQNFC 658 (702)
Q Consensus 635 av~~~~~~~--p~~yV~~~y~~~~~~ 658 (702)
+||...++. |+.||.+|||+++-.
T Consensus 598 kVL~~~~v~~IP~~YILkRWTKdAK~ 623 (846)
T PLN03097 598 VVLQMCQLSAIPSQYILKRWTKDAKS 623 (846)
T ss_pred HHHhhcCcccCchhhhhhhchhhhhh
Confidence 999999986 889999999888764
No 2
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=99.85 E-value=2.6e-21 Score=168.92 Aligned_cols=90 Identities=28% Similarity=0.484 Sum_probs=85.9
Q ss_pred ceeeecccCceeEE---eeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHHHhc
Q 044407 364 GWKINNPYNSVMLV---AAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFL 440 (702)
Q Consensus 364 ~T~~~~~y~~~ll~---~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vf 440 (702)
|||++|+| ++++. ++|+|++|+.+|+||+++.+|+.++|.|||+.+++.++ .. |.+||||+++|+.+||+++|
T Consensus 1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~--~~-p~~ii~D~~~~~~~Ai~~vf 76 (93)
T PF10551_consen 1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP--QK-PKVIISDFDKALINAIKEVF 76 (93)
T ss_pred Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc--cC-ceeeeccccHHHHHHHHHHC
Confidence 79999999 98886 99999999999999999999999999999999999994 45 99999999999999999999
Q ss_pred ccccchhhHHHHHHHHh
Q 044407 441 PKAVYRQCCLKIFTQMV 457 (702)
Q Consensus 441 P~a~h~~C~~Hi~~N~~ 457 (702)
|++.|++|.||+.+|++
T Consensus 77 P~~~~~~C~~H~~~n~k 93 (93)
T PF10551_consen 77 PDARHQLCLFHILRNIK 93 (93)
T ss_pred CCceEehhHHHHHHhhC
Confidence 99999999999999984
No 3
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=99.82 E-value=7.7e-21 Score=207.54 Aligned_cols=224 Identities=15% Similarity=0.249 Sum_probs=185.5
Q ss_pred CCCCCHHHHHHHHHHHhC-cccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccE
Q 044407 260 QPNLRTVDIRDEIEATYG-VVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERF 338 (702)
Q Consensus 260 ~~~~~~~~I~~~l~~~~g-~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f 338 (702)
-.|++.++|.+.++.-+| ..+|.+++.|..+.+.+.+ ..| +...
T Consensus 112 ~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w----~~R~-------------------- 156 (381)
T PF00872_consen 112 LKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAW----RNRP-------------------- 156 (381)
T ss_pred ccccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHH----hhhc--------------------
Confidence 368999999999999999 8899999887765543221 111 1110
Q ss_pred EEEEEeehhhHHHHHhcC-CcEEEEeceeeecccC-----ceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHH
Q 044407 339 KRMFVCWERTSYAFKNHC-RRLLAVDGWKINNPYN-----SVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINN 412 (702)
Q Consensus 339 ~~~F~~~~~~~~~f~~~~-~~vi~iD~T~~~~~y~-----~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~ 412 (702)
. ... -++|++||+|.+.+.+ ..+++++|+|.+|+..+||+.+...|+.++|.-||+.|++
T Consensus 157 -------------L-~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~ 222 (381)
T PF00872_consen 157 -------------L-ESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKE 222 (381)
T ss_pred -------------c-ccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhh
Confidence 0 123 4799999999987754 4689999999999999999999999999999999999999
Q ss_pred HhcccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCCc---hhHHHHHHHhccccHHHHHHHHHHHH
Q 044407 413 ALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTA---PVEHFFWSACRSTSATSFNKYMDLIH 489 (702)
Q Consensus 413 ~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~a~t~~~Fe~~~~~l~ 489 (702)
++ ...|..||+|+++||.+||.++||++.++.|.+|+++|+.++++.+ .+...++.+..+.+.+++...++.+.
T Consensus 223 RG---l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~ 299 (381)
T PF00872_consen 223 RG---LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFA 299 (381)
T ss_pred cc---ccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcc
Confidence 98 4568899999999999999999999999999999999999999754 67788888888888888888888876
Q ss_pred h----hChhhhHHhccCCccceeeeecCCCccccccCCChhhhHHHHHhh
Q 044407 490 N----ESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ 535 (702)
Q Consensus 490 ~----~~~~~~~yL~~~~~e~Wa~a~~~~~~~~g~~Ttn~~ES~N~~lk~ 535 (702)
+ .+|.+.+++.+...+.|+..-|+...+--+.|||.+||+|+.||+
T Consensus 300 ~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irr 349 (381)
T PF00872_consen 300 EKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRR 349 (381)
T ss_pred cccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhh
Confidence 5 378888999887777777665666545567899999999999997
No 4
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=99.63 E-value=7.9e-16 Score=125.58 Aligned_cols=67 Identities=25% Similarity=0.571 Sum_probs=64.8
Q ss_pred CcccccccEeCCHHHHHHHHHHHHHHcCceEEEeeecCeeEEEEeecCCCccEEEEEEEeCceeEEE
Q 044407 160 KMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIV 226 (702)
Q Consensus 160 ~~~~~~G~~F~s~~e~~~ai~~yAi~~gf~~~~~kS~~~r~~~~C~~~gCpwrv~a~~~~~~~~~~I 226 (702)
||.|.+||+|+|++||+.||..||+.++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus 1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I 67 (67)
T PF03108_consen 1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI 67 (67)
T ss_pred CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence 5779999999999999999999999999999999999999999999999999999999999999986
No 5
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=99.48 E-value=8.7e-13 Score=141.70 Aligned_cols=222 Identities=14% Similarity=0.161 Sum_probs=167.6
Q ss_pred CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccEE
Q 044407 260 QPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFK 339 (702)
Q Consensus 260 ~~~~~~~~I~~~l~~~~g~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f~ 339 (702)
..+++++++.+.+++.++..++...+.+.-....+ .+.+++.+-+
T Consensus 98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e---------------~v~~~~~r~l-------------------- 142 (379)
T COG3328 98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLDE---------------KVKAWQNRPL-------------------- 142 (379)
T ss_pred HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHH---------------HHHHHHhccc--------------------
Confidence 46899999999999999887777766555443332 2233322211
Q ss_pred EEEEeehhhHHHHHhcCCcEEEEeceeeecc--cCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhccc
Q 044407 340 RMFVCWERTSYAFKNHCRRLLAVDGWKINNP--YNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLE 417 (702)
Q Consensus 340 ~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~--y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~ 417 (702)
+..+++++||+|++-+ -+..+++|+|++.+|+-.++|+.+-..|+ ..|.-||..|+..+
T Consensus 143 ---------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg--- 203 (379)
T COG3328 143 ---------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG--- 203 (379)
T ss_pred ---------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc---
Confidence 2557999999999988 45689999999999999999999999999 99999999999987
Q ss_pred CCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCCc---hhHHHHHHHhccccHHHHHHHHHHHHh----
Q 044407 418 HGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTA---PVEHFFWSACRSTSATSFNKYMDLIHN---- 490 (702)
Q Consensus 418 ~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~a~t~~~Fe~~~~~l~~---- 490 (702)
......+++|+.+|+.+||..+||.+.++.|..|+.+|+..+...+ .+...+..+..+.+.++-...|..+..
T Consensus 204 l~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~ 283 (379)
T COG3328 204 LSDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGK 283 (379)
T ss_pred ccceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhh
Confidence 3445667779999999999999999999999999999999988766 334444555556666666665555443
Q ss_pred hChhhhHHhccCCccceeeeecCCCccccccCCChhhhHHHHHhh
Q 044407 491 ESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ 535 (702)
Q Consensus 491 ~~~~~~~yL~~~~~e~Wa~a~~~~~~~~g~~Ttn~~ES~N~~lk~ 535 (702)
..|....|+.+...+.|.-.-|+...+--+.|||.+|++|+.++.
T Consensus 284 ~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~ 328 (379)
T COG3328 284 RYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR 328 (379)
T ss_pred hcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence 467777777776555554333333323457899999999998775
No 6
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=98.84 E-value=1.1e-09 Score=72.69 Aligned_cols=28 Identities=43% Similarity=0.772 Sum_probs=25.6
Q ss_pred ceeecCccccCCccccchhHHHHHhcCC
Q 044407 616 QSCSCGLWQISGIPCAHACKGIQLIMGN 643 (702)
Q Consensus 616 ~tCsC~~fe~~GiPC~Halav~~~~~~~ 643 (702)
.+|||++||..||||+|+|+|+...+++
T Consensus 1 ~~CsC~~~~~~gipC~H~i~v~~~~~~~ 28 (28)
T smart00575 1 KTCSCRKFQLSGIPCRHALAAAIHIGLS 28 (28)
T ss_pred CcccCCCcccCCccHHHHHHHHHHhCCC
Confidence 4799999999999999999999998763
No 7
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=98.70 E-value=7.4e-08 Score=84.04 Aligned_cols=69 Identities=13% Similarity=0.346 Sum_probs=65.2
Q ss_pred eCCHHHHHHHHHHHHHHcCceEEEeeecCeeEEEEeec------------------------------------------
Q 044407 169 FRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSD------------------------------------------ 206 (702)
Q Consensus 169 F~s~~e~~~ai~~yAi~~gf~~~~~kS~~~r~~~~C~~------------------------------------------ 206 (702)
|.|++|++.+|+.++...|+++.+.+|+.+.+.+.|..
T Consensus 1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk 80 (111)
T PF08731_consen 1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK 80 (111)
T ss_pred CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence 88999999999999999999999999999999999973
Q ss_pred CCCccEEEEEEEeCceeEEEeEecCcccccc
Q 044407 207 LRCDWKIKAGRVVNGRTFIVKEFVAQHKCTR 237 (702)
Q Consensus 207 ~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~ 237 (702)
..|||+|+|......+.|.|..+++.|+|++
T Consensus 81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l 111 (111)
T PF08731_consen 81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL 111 (111)
T ss_pred cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence 2699999999999999999999999999974
No 8
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=98.40 E-value=4.7e-07 Score=78.43 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCceEEEeeecC-------eeEEEEeec----------------------CCCccEEEEEEEeCceeEEEe
Q 044407 177 KAIEVFAIRDGFKLCIMENRG-------HAVSYECSD----------------------LRCDWKIKAGRVVNGRTFIVK 227 (702)
Q Consensus 177 ~ai~~yAi~~gf~~~~~kS~~-------~r~~~~C~~----------------------~gCpwrv~a~~~~~~~~~~I~ 227 (702)
++|+.||...||.++..+|.. .++.++|.. .||||+|.+.... ++.|.|.
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~ 79 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT 79 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence 478999999999999987654 378899985 4899999999877 8999999
Q ss_pred EecCccccccc
Q 044407 228 EFVAQHKCTRR 238 (702)
Q Consensus 228 ~~~~~HnC~~~ 238 (702)
.+..+|||++.
T Consensus 80 ~~~~~HNH~L~ 90 (91)
T PF03101_consen 80 SFVLEHNHPLC 90 (91)
T ss_pred ECcCCcCCCCC
Confidence 99999999874
No 9
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=97.95 E-value=6.7e-06 Score=59.61 Aligned_cols=29 Identities=34% Similarity=0.707 Sum_probs=26.4
Q ss_pred CCCceeecCccccCCccccchhHHHHHhc
Q 044407 613 MEAQSCSCGLWQISGIPCAHACKGIQLIM 641 (702)
Q Consensus 613 l~~~tCsC~~fe~~GiPC~Halav~~~~~ 641 (702)
+...+|||..|+..|.||+|++|++...+
T Consensus 12 ~~~~~CsC~~~~~~~~~CkHi~av~~~~~ 40 (40)
T PF04434_consen 12 IEQASCSCPYFQFRGGPCKHIVAVLLALN 40 (40)
T ss_pred ccccEeeCCCccccCCcchhHHHHHHhhC
Confidence 67899999999999999999999998753
No 10
>PF13610 DDE_Tnp_IS240: DDE domain
Probab=96.12 E-value=0.0022 Score=60.21 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=67.9
Q ss_pred CcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHH
Q 044407 357 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAV 436 (702)
Q Consensus 357 ~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai 436 (702)
++.+.+|-||.+.+ +-..+....+|.+++ +|++-|-..-+...=..||..+++.. ...|..|+||+.++...|+
T Consensus 1 ~~~w~~DEt~iki~-G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~ 74 (140)
T PF13610_consen 1 GDSWHVDETYIKIK-GKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAI 74 (140)
T ss_pred CCEEEEeeEEEEEC-CEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhh
Confidence 46789999998764 335667888999999 88999999999999899998888777 2788999999999999999
Q ss_pred HHhccc
Q 044407 437 EEFLPK 442 (702)
Q Consensus 437 ~~vfP~ 442 (702)
++++|.
T Consensus 75 ~~l~~~ 80 (140)
T PF13610_consen 75 KELNPE 80 (140)
T ss_pred hhcccc
Confidence 999875
No 11
>PF10532 Plant_all_beta: Plant specific N-all beta domain; InterPro: IPR018290 This entry represents a domain with an all-beta structure that is found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is found associated with the WRKY domain [].
Probab=96.09 E-value=0.00099 Score=58.49 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=56.3
Q ss_pred cccCcceeeeccccccccccCCCCCCchhhHHHHhhhccchhhhhhccCCC--ccchhhhhccccc
Q 044407 29 NKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKAKCRRIRRKIARELFPSN--SHSNEQCNRHSRT 92 (702)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 92 (702)
-|..++|+. .+|+.++++.|.||.|+..||+.+++.++|+-|-++.++.. .|+.||+.|+.+.
T Consensus 10 ~klklsY~p-~~~~~~re~yI~DDEDv~~Ylt~~d~e~~r~VLhVE~~~~~~~~er~eQis~v~~~ 74 (114)
T PF10532_consen 10 VKLKLSYNP-FSVKPKRETYIVDDEDVLVYLTSVDEEGRRSVLHVEVVNDLEENERLEQISRVERR 74 (114)
T ss_pred eEEEEEEee-eccCCccceeEecCCcEEEEEEEcccccceeeEEEEEecCccccceeeeeeecccc
Confidence 478899997 67999999999999999999999999999999999999977 4566999988654
No 12
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=95.47 E-value=0.14 Score=58.04 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=93.8
Q ss_pred cCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCC-chhHHHHHHHhcc
Q 044407 397 VEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPT-APVEHFFWSACRS 475 (702)
Q Consensus 397 ~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~-~~~~~~~~~~~~a 475 (702)
..+.+-|.-+.+.+.+...+....-+++.+|+...|.+++. .+|++.|.+..+|+.+.+.+.++. ..+.+.++++.+.
T Consensus 235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~ 313 (470)
T PF06782_consen 235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK 313 (470)
T ss_pred cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 55678899999999888853333357889999999988776 999999999999999999988864 4677777778888
Q ss_pred ccHHHHHHHHHHHHhh--Ch-------hhhHHhccCCccceee--eecCCCccccccCCChhhhHHHHHhh
Q 044407 476 TSATSFNKYMDLIHNE--SE-------ECHDWLLQTDWSSWAL--FTIPKWVKCICVTLSITDKLRNYLHQ 535 (702)
Q Consensus 476 ~t~~~Fe~~~~~l~~~--~~-------~~~~yL~~~~~e~Wa~--a~~~~~~~~g~~Ttn~~ES~N~~lk~ 535 (702)
.....++..++.+... .+ ++..||.++ |.. .|-. +-|.......|+.+..+..
T Consensus 314 ~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n----~~~i~~y~~---~~~~~g~g~ee~~~~~~s~ 377 (470)
T PF06782_consen 314 GDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNN----WDGIKPYRE---REGLRGIGAEESVSHVLSY 377 (470)
T ss_pred cCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHC----HHHhhhhhh---ccCCCccchhhhhhhHHHH
Confidence 8888888888887653 21 345566554 321 1211 1233445567888877644
No 13
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=93.77 E-value=0.093 Score=54.07 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=67.4
Q ss_pred EEEeceeeecccCceeEEeeeccC--CCCeEEEEEEEeecCChhhHHHHHHHH-HHHhcccCCCcEEEEccCchHHHHHH
Q 044407 360 LAVDGWKINNPYNSVMLVAAALDG--NNGILPIAFCEVQVEDLDSWVFFIKNI-NNALRLEHGEGLCIMGDGDNGIDYAV 436 (702)
Q Consensus 360 i~iD~T~~~~~y~~~ll~~vg~d~--~~~~~plafalv~~E~~es~~wfl~~l-~~~~~~~~~~p~~iitD~~~~l~~Ai 436 (702)
|+||-+........ +..+-+|. +++. -++++++-+.++..-||..+ -... .....+|++|...+..+|+
T Consensus 1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~---il~i~~~r~~~~l~~~~~~~~~~~~---~~~v~~V~~Dm~~~y~~~~ 72 (249)
T PF01610_consen 1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGR---ILDILPGRDKETLKDFFRSLYPEEE---RKNVKVVSMDMSPPYRSAI 72 (249)
T ss_pred CeEeeeeeecCCcc--eeEEEEECccCCce---EEEEcCCccHHHHHHHHHHhCcccc---ccceEEEEcCCCccccccc
Confidence 46776666543332 33334444 3332 23588999999998888876 3222 3456789999999999999
Q ss_pred HHhcccccchhhHHHHHHHHhhhC
Q 044407 437 EEFLPKAVYRQCCLKIFTQMVKRF 460 (702)
Q Consensus 437 ~~vfP~a~h~~C~~Hi~~N~~~~~ 460 (702)
++.||+|.+..--||+++++.+.+
T Consensus 73 ~~~~P~A~iv~DrFHvvk~~~~al 96 (249)
T PF01610_consen 73 REYFPNAQIVADRFHVVKLANRAL 96 (249)
T ss_pred cccccccccccccchhhhhhhhcc
Confidence 999999999999999999886543
No 14
>PHA02517 putative transposase OrfB; Reviewed
Probab=92.71 E-value=3.1 Score=43.58 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=82.7
Q ss_pred HHHHHHhhhhcc-CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEe
Q 044407 248 WISAIYLHRWKL-QPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLE 326 (702)
Q Consensus 248 ~ia~~~~~~i~~-~~~~~~~~I~~~l~~~~g~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~ 326 (702)
.+.+.+.+.+.. .+.+..+.|...|++. |+.++..+++|..+.+ |-... ......... .-.
T Consensus 30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~-----------~~~k~~~~~-~~~ 91 (277)
T PHA02517 30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGV-----------LRGKKVRTT-ISR 91 (277)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceE-----------ecCCCcCCC-CCC
Confidence 345555555544 5788999999988755 9999999998765432 21000 000000000 000
Q ss_pred eccccccccccEEEEEEeehhhHHHHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHH
Q 044407 327 TKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFF 406 (702)
Q Consensus 327 ~~~~~~d~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wf 406 (702)
. .....+.+.+-|-+ ..-..++..|.||....- +..++++-+|...+ +++|+.+...++.+...-.
T Consensus 92 ~---~~~~~n~~~r~f~~---------~~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~ 157 (277)
T PHA02517 92 K---AVAAPDRVNRQFVA---------TRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDA 157 (277)
T ss_pred C---CCCCCCcccCCCCC---------CCCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHH
Confidence 0 00001111111111 124568999999986543 55677777776655 5678888888887765555
Q ss_pred HHHHHHHhcccCCCcEEEEccCchHH
Q 044407 407 IKNINNALRLEHGEGLCIMGDGDNGI 432 (702)
Q Consensus 407 l~~l~~~~~~~~~~p~~iitD~~~~l 432 (702)
|+...... +...+..|.||+....
T Consensus 158 l~~a~~~~--~~~~~~i~~sD~G~~y 181 (277)
T PHA02517 158 LEQALWAR--GRPGGLIHHSDKGSQY 181 (277)
T ss_pred HHHHHHhc--CCCcCcEeeccccccc
Confidence 54443333 1222356779988754
No 15
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus
Probab=91.38 E-value=0.37 Score=52.62 Aligned_cols=57 Identities=12% Similarity=0.325 Sum_probs=51.0
Q ss_pred ccccEeCCHHHHHHHHHHHHHHcCceEEEeeecC-eeEEEEeecCCCccEEEEEEEeC
Q 044407 164 YHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRG-HAVSYECSDLRCDWKIKAGRVVN 220 (702)
Q Consensus 164 ~~G~~F~s~~e~~~ai~~yAi~~gf~~~~~kS~~-~r~~~~C~~~gCpwrv~a~~~~~ 220 (702)
..+..|++.++-+.+|.+|.+..++.+..+.|-+ ++++|.|.-..|||+|.++..+.
T Consensus 23 ~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g~ 80 (496)
T PF04684_consen 23 AQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCGN 80 (496)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeeccc
Confidence 4578899999999999999999999999988864 78999999999999999986543
No 16
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=90.46 E-value=0.46 Score=37.63 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=32.8
Q ss_pred CeeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccc
Q 044407 197 GHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCT 236 (702)
Q Consensus 197 ~~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~ 236 (702)
-.|-.++|+..+||++-.+.+..++....++++.++|||+
T Consensus 20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 3577799999999999999988877888899999999996
No 17
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=89.16 E-value=23 Score=36.85 Aligned_cols=147 Identities=8% Similarity=-0.001 Sum_probs=86.4
Q ss_pred hhHHHHHHhhhhccCCCCCHHHHHHHHHHH---hCc-ccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCc
Q 044407 246 PKWISAIYLHRWKLQPNLRTVDIRDEIEAT---YGV-VCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRN 321 (702)
Q Consensus 246 ~~~ia~~~~~~i~~~~~~~~~~I~~~l~~~---~g~-~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~ 321 (702)
...+...+.+....++.+..+.|...|+.. .|+ .++..+++|....+ |-. ...+...+.+
T Consensus 10 ~~~l~~~I~~~~~~~~~yG~rri~~~L~~~~~~~g~~~v~~krV~rlmr~~-----gL~-----------~~~r~~~~~~ 73 (262)
T PRK14702 10 DTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQN-----ALL-----------LERKPAVPPS 73 (262)
T ss_pred hHHHHHHHHHHHHhCcccChHHHHHHHHhhhcccCccccCHHHHHHHHHHh-----CCc-----------cccCCCCCCC
Confidence 344555566655667889999999988875 377 48998888775432 100 0000000000
Q ss_pred EEEEeeccccccccccEEEEEEeehhhHHHHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeec-CCh
Q 044407 322 IVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQV-EDL 400 (702)
Q Consensus 322 ~~~v~~~~~~~d~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~-E~~ 400 (702)
. . ..... | ....-..++..|-||....-++.++.++-+|...+ .++||++... -+.
T Consensus 74 ~---~------~~~~~----~---------~~~~pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~ 130 (262)
T PRK14702 74 K---R------AHTGR----V---------AVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNS 130 (262)
T ss_pred C---c------CCCCc----c---------ccCCCCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCH
Confidence 0 0 00000 1 01124578999999987654556888888887776 6789999874 565
Q ss_pred hhHHHHHHH-HHHHhcc-cCCCcEEEEccCchH
Q 044407 401 DSWVFFIKN-INNALRL-EHGEGLCIMGDGDNG 431 (702)
Q Consensus 401 es~~wfl~~-l~~~~~~-~~~~p~~iitD~~~~ 431 (702)
+.-.-+|+. +....+. ....|..|.||+...
T Consensus 131 ~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsq 163 (262)
T PRK14702 131 ETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSC 163 (262)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEcCCCcc
Confidence 555555553 3333220 123578899999874
No 18
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=86.96 E-value=8.1 Score=38.69 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=63.1
Q ss_pred CCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHH
Q 044407 356 CRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYA 435 (702)
Q Consensus 356 ~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~A 435 (702)
-++.+.+|-||.+.+-+. .+.-..+|.+| .++.+-|...-+...=.-||..+++.. ..|.+|+||+.+....|
T Consensus 69 ~~~~w~vDEt~ikv~gkw-~ylyrAid~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A 141 (215)
T COG3316 69 AGDSWRVDETYIKVNGKW-HYLYRAIDADG--LTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAA 141 (215)
T ss_pred cccceeeeeeEEeeccEe-eehhhhhccCC--CeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHH
Confidence 456788999998764222 23344556664 467788888888888888888877776 57889999999999999
Q ss_pred HHHhcccccchh
Q 044407 436 VEEFLPKAVYRQ 447 (702)
Q Consensus 436 i~~vfP~a~h~~ 447 (702)
+.++-+.+.|+-
T Consensus 142 ~~~l~~~~ehr~ 153 (215)
T COG3316 142 LRKLGSEVEHRT 153 (215)
T ss_pred HHhcCcchheec
Confidence 999988555543
No 19
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=85.78 E-value=3.6 Score=36.57 Aligned_cols=77 Identities=10% Similarity=-0.039 Sum_probs=55.7
Q ss_pred CCcEEEEeceeeec-ccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407 356 CRRLLAVDGWKINN-PYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY 434 (702)
Q Consensus 356 ~~~vi~iD~T~~~~-~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 434 (702)
-...+.+|.++... ..++..+..+.+|..-+ +.+++.+-..++.+.+..+|....... ....|.+|+||+..+..+
T Consensus 5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~~i~tD~g~~f~~ 81 (120)
T PF00665_consen 5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSR-FIYAFPVSSKETAEAALRALKRAIEKR--GGRPPRVIRTDNGSEFTS 81 (120)
T ss_dssp TTTEEEEEEEEETGGCTT-CEEEEEEEETTTT-EEEEEEESSSSHHHHHHHHHHHHHHHH--S-SE-SEEEEESCHHHHS
T ss_pred CCCEEEEeeEEEecCCCCccEEEEEEEECCCC-cEEEEEeeccccccccccccccccccc--ccccceeccccccccccc
Confidence 45689999997763 55668888888887666 455777777778888888888666666 233389999999998764
Q ss_pred H
Q 044407 435 A 435 (702)
Q Consensus 435 A 435 (702)
.
T Consensus 82 ~ 82 (120)
T PF00665_consen 82 H 82 (120)
T ss_dssp H
T ss_pred c
Confidence 3
No 20
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition. This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=84.22 E-value=2.2 Score=44.52 Aligned_cols=134 Identities=11% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccEE
Q 044407 260 QPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFK 339 (702)
Q Consensus 260 ~~~~~~~~I~~~l~~~~g~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f~ 339 (702)
.-.++...+.+.+... |+.+|..++.+.-.++.+.+ ....+.+.+.
T Consensus 18 ~~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l-----------~~~~~~l~~~---------------------- 63 (271)
T PF03050_consen 18 VYHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEAL-----------KPLYEALKEE---------------------- 63 (271)
T ss_pred cCCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhh-----------hhhhhhhhhh----------------------
Confidence 3466777777777777 99999999887765553322 1111111111
Q ss_pred EEEEeehhhHHHHHhcCCcEEEEeceeee----cccC-ceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHh
Q 044407 340 RMFVCWERTSYAFKNHCRRLLAVDGWKIN----NPYN-SVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNAL 414 (702)
Q Consensus 340 ~~F~~~~~~~~~f~~~~~~vi~iD~T~~~----~~y~-~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~ 414 (702)
. --.+|+.+|-|..+ ++.. +-+.++++-+ .+.|.+.++-+.+...-+|..
T Consensus 64 ------------~--~~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~----- 118 (271)
T PF03050_consen 64 ------------L--RSSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD----- 118 (271)
T ss_pred ------------c--cccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-----
Confidence 1 14578888888887 4333 3334444333 556666666666665555433
Q ss_pred cccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCC
Q 044407 415 RLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPT 462 (702)
Q Consensus 415 ~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~ 462 (702)
-.-+++||+..+-.. +..+.|+.|+.|+.+.+.+-...
T Consensus 119 -----~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~ 156 (271)
T PF03050_consen 119 -----FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES 156 (271)
T ss_pred -----cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence 224899999987544 22889999999999999776553
No 21
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=82.31 E-value=2.1 Score=33.39 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=25.0
Q ss_pred cCceEEEeeecCeeEEEEeecC---CCccEEEEEEEeCceeEEEeEecCcccc
Q 044407 186 DGFKLCIMENRGHAVSYECSDL---RCDWKIKAGRVVNGRTFIVKEFVAQHKC 235 (702)
Q Consensus 186 ~gf~~~~~kS~~~r~~~~C~~~---gCpwrv~a~~~~~~~~~~I~~~~~~HnC 235 (702)
.|+.|...+.........|... +|+++|... .+...|.....+|||
T Consensus 14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~----~~~~~~~~~~~~HnH 62 (62)
T PF04500_consen 14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD----AGDGRVVRTNGEHNH 62 (62)
T ss_dssp TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE----CCCCEEEECCCccCC
Confidence 3777777776678889999874 899999987 223345556688987
No 22
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=79.68 E-value=2.3 Score=33.49 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=31.3
Q ss_pred eeEEEEeec-CCCccEEEEEEEeCceeEEEeEecCcccc
Q 044407 198 HAVSYECSD-LRCDWKIKAGRVVNGRTFIVKEFVAQHKC 235 (702)
Q Consensus 198 ~r~~~~C~~-~gCpwrv~a~~~~~~~~~~I~~~~~~HnC 235 (702)
-|-.++|.. .|||++=.+.+..++....++++.++|||
T Consensus 21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 466789998 89999888877766666777899999998
No 23
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=78.81 E-value=30 Score=36.83 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=85.6
Q ss_pred HHHHHHhhhhccCCCCCHHHHHHHHHHHh---Cc-ccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEE
Q 044407 248 WISAIYLHRWKLQPNLRTVDIRDEIEATY---GV-VCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIV 323 (702)
Q Consensus 248 ~ia~~~~~~i~~~~~~~~~~I~~~l~~~~---g~-~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~ 323 (702)
.+...+.+.....+.+..+.|...|++.. |+ .++..+++|..+.+ |-.. ......+.+.
T Consensus 51 ~l~~~I~~i~~~~~~yG~Rri~~~L~~~g~~~g~~~v~~k~V~RlMr~~-----Gl~~-----------~~~~~~~~~~- 113 (301)
T PRK09409 51 DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQN-----ALLL-----------ERKPAVPPSK- 113 (301)
T ss_pred HHHHHHHHHHHhCccCCHHHHHHHHHhhhcccCccccCHHHHHHHHHHc-----CCcc-----------cccCCCCCCC-
Confidence 34455555555578899999998888752 66 58888888765432 1100 0000000000
Q ss_pred EEeeccccccccccEEEEEEeehhhHHHHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeec-CChhh
Q 044407 324 LLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQV-EDLDS 402 (702)
Q Consensus 324 ~v~~~~~~~d~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~-E~~es 402 (702)
. .....| . ...-..+++.|-||....-++-++.++-+|...+ .++||++... .+.+.
T Consensus 114 --~------~~~~~~----~---------~~~pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~ 171 (301)
T PRK09409 114 --R------AHTGRV----A---------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSET 171 (301)
T ss_pred --C------CCCCCc----C---------CCCCCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHH
Confidence 0 001111 0 1235579999999986544556888888888777 6889999875 56666
Q ss_pred HHHHHH-HHHHHhcc-cCCCcEEEEccCchH
Q 044407 403 WVFFIK-NINNALRL-EHGEGLCIMGDGDNG 431 (702)
Q Consensus 403 ~~wfl~-~l~~~~~~-~~~~p~~iitD~~~~ 431 (702)
-.-+|+ .+..+.+. ....|..|.||+...
T Consensus 172 v~~~l~~a~~~~~~~~~~~~~~iihSDrGsq 202 (301)
T PRK09409 172 VQDVMLGAVERRFGNDLPSSPVEWLTDNGSC 202 (301)
T ss_pred HHHHHHHHHHHHhccCCCCCCcEEecCCCcc
Confidence 555555 34444320 123467899999874
No 24
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=73.78 E-value=36 Score=32.37 Aligned_cols=103 Identities=9% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEe-ecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407 356 CRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEV-QVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY 434 (702)
Q Consensus 356 ~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv-~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 434 (702)
.+=.|..||- ++..+.+++.++..-+.|-.|.=..-.- ...+.+...-+|+...+.+ +...-+-||||....+.+
T Consensus 32 ~Gcsi~~DgW--td~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeV--G~~nVvqVVTDn~~~~~~ 107 (153)
T PF04937_consen 32 TGCSIMSDGW--TDRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEV--GEENVVQVVTDNASNMKK 107 (153)
T ss_pred cCEEEEEecC--cCCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHh--hhhhhhHHhccCchhHHH
Confidence 3334444444 3334445555444444444443322211 1245566666666666666 345566789999999888
Q ss_pred HH---HHhcccccchhhHHHHHHHHhhhCCC
Q 044407 435 AV---EEFLPKAVYRQCCLKIFTQMVKRFPT 462 (702)
Q Consensus 435 Ai---~~vfP~a~h~~C~~Hi~~N~~~~~~~ 462 (702)
|- .+-+|.....-|..|-+.-+.+.+..
T Consensus 108 a~~~L~~k~p~ifw~~CaaH~inLmledi~k 138 (153)
T PF04937_consen 108 AGKLLMEKYPHIFWTPCAAHCINLMLEDIGK 138 (153)
T ss_pred HHHHHHhcCCCEEEechHHHHHHHHHHHHhc
Confidence 84 44489999999999999877776554
No 25
>PF13565 HTH_32: Homeodomain-like domain
Probab=73.57 E-value=7.3 Score=31.97 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHHHHhhhhccCCCCCHHHHHHHHHHHhCccc--CHHHHHHH
Q 044407 248 WISAIYLHRWKLQPNLRTVDIRDEIEATYGVVC--HEAKLLCA 288 (702)
Q Consensus 248 ~ia~~~~~~i~~~~~~~~~~I~~~l~~~~g~~i--s~~~~~ra 288 (702)
.+.+.+...+..+|.+++.+|...|.+.+|+.+ |.+++||.
T Consensus 34 e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~ 76 (77)
T PF13565_consen 34 EQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI 76 (77)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence 344666777778899999999999999999876 99999874
No 26
>PRK13907 rnhA ribonuclease H; Provisional
Probab=63.07 E-value=79 Score=28.60 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=46.5
Q ss_pred EEEEeceeeecccCceeEEeeeccCCCCeEEEEE-EEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHH
Q 044407 359 LLAVDGWKINNPYNSVMLVAAALDGNNGILPIAF-CEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVE 437 (702)
Q Consensus 359 vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plaf-alv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~ 437 (702)
.|.+||.+..+.-.+-...++ .+..+... +++ .-..+.+..-|.-++..|+.+.. .+..++.|-||. +.+.+++.
T Consensus 3 ~iy~DGa~~~~~g~~G~G~vi-~~~~~~~~-~~~~~~~~tn~~AE~~All~aL~~a~~-~g~~~v~i~sDS-~~vi~~~~ 78 (128)
T PRK13907 3 EVYIDGASKGNPGPSGAGVFI-KGVQPAVQ-LSLPLGTMSNHEAEYHALLAALKYCTE-HNYNIVSFRTDS-QLVERAVE 78 (128)
T ss_pred EEEEeeCCCCCCCccEEEEEE-EECCeeEE-EEecccccCCcHHHHHHHHHHHHHHHh-CCCCEEEEEech-HHHHHHHh
Confidence 478999988764222222222 44444332 332 22345667778888888888874 334567788887 55666776
Q ss_pred Hhc
Q 044407 438 EFL 440 (702)
Q Consensus 438 ~vf 440 (702)
..+
T Consensus 79 ~~~ 81 (128)
T PRK13907 79 KEY 81 (128)
T ss_pred HHH
Confidence 654
No 27
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=48.44 E-value=31 Score=30.30 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=33.6
Q ss_pred cCceeEEEecCCCe--EEEEe--CCeeeEeccCCCceeecCcccc----C-CccccchhHHHHHhcCCchhhcc
Q 044407 585 DGQRFVLVEENGPR--LKLTD--TRSLLFDLNMEAQSCSCGLWQI----S-GIPCAHACKGIQLIMGNVEEYVD 649 (702)
Q Consensus 585 ~a~~~~V~~~~~~~--~~V~~--~~~~~V~~~l~~~tCsC~~fe~----~-GiPC~Halav~~~~~~~p~~yV~ 649 (702)
+...+.-...+++. +.|.- ++.|+++ .. -|||..|-. - --||.|++.+-...--.-.++|+
T Consensus 19 ~~Grfv~l~l~~~~~~~fVyvG~~rdYIl~--~g--fCSCp~~~~svvl~Gk~~C~Hi~glk~A~~~gk~~~I~ 88 (117)
T COG5431 19 KRGRFVFLYLKRSKVKFFVYVGKERDYILE--GG--FCSCPDFLGSVVLKGKSPCAHIIGLKVAKITGKYDYID 88 (117)
T ss_pred ccCcEEEEeeCCceEEEEEEEccccceEEE--cC--cccCHHHHhHhhhcCcccchhhhheeeeeecCcEEEEE
Confidence 33344434444443 33433 5577776 44 899988862 2 34799998754443322333443
No 28
>PF12762 DDE_Tnp_IS1595: ISXO2-like transposase domain; InterPro: IPR024445 This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.
Probab=44.61 E-value=52 Score=30.74 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=40.9
Q ss_pred cEEEEeceeeeccc--------------CceeEEeeeccCC-CCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcE
Q 044407 358 RLLAVDGWKINNPY--------------NSVMLVAAALDGN-NGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGL 422 (702)
Q Consensus 358 ~vi~iD~T~~~~~y--------------~~~ll~~vg~d~~-~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~ 422 (702)
.+|-||.||..++- .....++++++-+ +..--+...++.+.+.++..-+++... .+..
T Consensus 4 G~VEiDEty~~~~~~~~~~~~~~~gr~~~~k~~V~~~ver~~~~~~~~~~~~v~~~~~~tl~~~i~~~i-------~~gs 76 (151)
T PF12762_consen 4 GIVEIDETYFGGRKNKKPRRKGKRGRGSKNKVPVFGAVERNDGGTGRVFMFVVPDRSAETLKPIIQEHI-------EPGS 76 (151)
T ss_pred CEEEeCcCEECCcccccccCCCCCCCcCCCCcEEEEEEeecccCCceEEEEeecccccchhHHHHHHhh-------hccc
Confidence 47888888886433 1123344444443 333334445567788887766665432 3446
Q ss_pred EEEccCchHHH
Q 044407 423 CIMGDGDNGID 433 (702)
Q Consensus 423 ~iitD~~~~l~ 433 (702)
+|+||..++-.
T Consensus 77 ~i~TD~~~aY~ 87 (151)
T PF12762_consen 77 TIITDGWRAYN 87 (151)
T ss_pred eeeecchhhcC
Confidence 89999998753
No 29
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=18 Score=36.91 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=20.7
Q ss_pred CCceeecCccccCCccccchhHHHHHhc
Q 044407 614 EAQSCSCGLWQISGIPCAHACKGIQLIM 641 (702)
Q Consensus 614 ~~~tCsC~~fe~~GiPC~Halav~~~~~ 641 (702)
-...|||..| -.||.|+-||....+
T Consensus 123 l~~dCSCPD~---anPCKHi~AvyY~la 147 (266)
T COG4279 123 LSTDCSCPDY---ANPCKHIAAVYYLLA 147 (266)
T ss_pred cccccCCCCc---ccchHHHHHHHHHHH
Confidence 4467999885 579999999998875
No 30
>PF13592 HTH_33: Winged helix-turn helix
Probab=27.28 E-value=93 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHhCcccCHHHHHHHHHH
Q 044407 261 PNLRTVDIRDEIEATYGVVCHEAKLLCAAKR 291 (702)
Q Consensus 261 ~~~~~~~I~~~l~~~~g~~is~~~~~rak~~ 291 (702)
.-++.++|.+.|.+.+|+.+|.+.+++.-.+
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r 33 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKR 33 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHH
Confidence 4567889999999999999999988876443
No 31
>PRK00766 hypothetical protein; Provisional
Probab=25.62 E-value=4.7e+02 Score=25.97 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=47.3
Q ss_pred cEEEEe-ceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHh-----c---c------------
Q 044407 358 RLLAVD-GWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNAL-----R---L------------ 416 (702)
Q Consensus 358 ~vi~iD-~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~-----~---~------------ 416 (702)
.|+.|| +.|..+.-+-..++-+-.-++.-+.-++|+.+...-.|.=.-+.+.++... . +
T Consensus 10 rvlGidds~f~~~~~~~~~lvGvv~r~~~~idGv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD 89 (194)
T PRK00766 10 RVLGIDDGTFLFKSSEKVILVGVVMRGGDWVDGVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVD 89 (194)
T ss_pred eEEEEecCccccCCCCCEEEEEEEEECCeEEeeEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEEec
Confidence 477777 444433223344444444555555566666665555555454444443311 0 0
Q ss_pred ------cCCCcEEEEccCc---hHHHHHHHHhcccccch
Q 044407 417 ------EHGEGLCIMGDGD---NGIDYAVEEFLPKAVYR 446 (702)
Q Consensus 417 ------~~~~p~~iitD~~---~~l~~Ai~~vfP~a~h~ 446 (702)
...-|+.+++..- .+|.+|+++.||+...+
T Consensus 90 ~~~l~~~tg~PVI~V~r~~p~~~~ie~AL~k~f~~~~~R 128 (194)
T PRK00766 90 IEELYRETGLPVIVVMRKKPDFEAIESALKKHFSDWEER 128 (194)
T ss_pred HHHHHHHHCCCEEEEEecCCCHHHHHHHHHHHCCCHHHH
Confidence 0124666664443 37999999999986554
No 32
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=23.25 E-value=63 Score=26.04 Aligned_cols=36 Identities=11% Similarity=0.319 Sum_probs=16.2
Q ss_pred hhhhccCCCCCHHHHHHHHHHHhCcccCHHHHHHHHH
Q 044407 254 LHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAK 290 (702)
Q Consensus 254 ~~~i~~~~~~~~~~I~~~l~~~~g~~is~~~~~rak~ 290 (702)
...+..+|..+..+|...+.+. |..+|..+++|.-.
T Consensus 5 ~~~v~~~p~~s~~~i~~~l~~~-~~~vS~~TI~r~L~ 40 (72)
T PF01498_consen 5 VRMVRRNPRISAREIAQELQEA-GISVSKSTIRRRLR 40 (72)
T ss_dssp -----------HHHHHHHT----T--S-HHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHc-cCCcCHHHHHHHHH
Confidence 3455678999999999999888 99999999887643
No 33
>PHA01346 hypothetical protein
Probab=22.75 E-value=49 Score=24.02 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=27.7
Q ss_pred ccccccCCCCCCchhhHHHHhhhccchhhhhh
Q 044407 43 SRLRGNSANDTDRPEQLLKAKCRRIRRKIARE 74 (702)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (702)
-|+|-+.+.|.||..+-..|..-++.|++.|-
T Consensus 20 krlrlsavsdpdfsqekihaeldsllrklsrh 51 (53)
T PHA01346 20 KRLRLSAVSDPDFSQEKIHAELDSLLRKLSRH 51 (53)
T ss_pred HHHHhhhcCCCCccHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999998988888764
No 34
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=22.28 E-value=1.6e+02 Score=22.45 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred HHHHHHhhhhcc-C-CCCCHHHHHHHHHHHhCcccCHHHH
Q 044407 248 WISAIYLHRWKL-Q-PNLRTVDIRDEIEATYGVVCHEAKL 285 (702)
Q Consensus 248 ~ia~~~~~~i~~-~-~~~~~~~I~~~l~~~~g~~is~~~~ 285 (702)
-+...+.+.+++ + ..++.++|...|.+.+|+.++..+.
T Consensus 4 ~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~~K~ 43 (54)
T PF08766_consen 4 EIREAIREILREADLDTVTKKQVREQLEERFGVDLSSRKK 43 (54)
T ss_dssp HHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SHHHH
T ss_pred HHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHHHHH
Confidence 355566666665 2 4789999999999999999986553
No 35
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=21.55 E-value=2.3e+02 Score=21.57 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=19.5
Q ss_pred CceeEEeeeccCCCCeEEEEEEEeecC
Q 044407 372 NSVMLVAAALDGNNGILPIAFCEVQVE 398 (702)
Q Consensus 372 ~~~ll~~vg~d~~~~~~plafalv~~E 398 (702)
...-++++|-.++|+..++.-.+..+|
T Consensus 36 efssfvlcgetpdgrrlvlthmistde 62 (66)
T PF13082_consen 36 EFSSFVLCGETPDGRRLVLTHMISTDE 62 (66)
T ss_pred EEEEEEEEccCCCCcEEEEEEEecchh
Confidence 344567888888888888877765554
Done!