Query 044407
Match_columns 702
No_of_seqs 275 out of 1586
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj2_A Probable WRKY transcrip 88.9 0.47 1.6E-05 38.3 4.6 41 198-238 37-77 (78)
2 2ayd_A WRKY transcription fact 88.8 0.45 1.5E-05 38.3 4.4 41 198-238 34-74 (76)
3 1c0m_A Protein (integrase); HI 74.9 12 0.0004 36.6 9.5 70 357-433 10-79 (238)
4 2rpr_A Flywch-type zinc finger 72.9 4.7 0.00016 33.1 5.0 46 187-239 27-75 (87)
5 3hot_A Transposable element ma 67.6 35 0.0012 35.0 11.7 58 370-430 186-252 (345)
6 3kks_A Integrase, IN; beta-str 60.0 29 0.001 30.4 8.2 65 358-434 3-67 (152)
7 1ex4_A Integrase; SH3-like dom 57.4 44 0.0015 32.3 9.7 65 357-433 9-73 (239)
8 1cxq_A Avian sarcoma virus int 44.2 76 0.0026 28.2 8.4 72 356-434 10-81 (162)
9 3l3u_A POL polyprotein; DNA in 39.7 63 0.0022 28.7 7.1 66 356-433 8-73 (163)
10 3hph_A Integrase, IN; protein- 37.8 93 0.0032 29.3 8.3 66 358-435 61-126 (219)
11 1bco_A MUA domain II, bacterio 37.4 59 0.002 33.2 7.2 73 356-433 15-95 (327)
12 1fme_A FSD-EY peptide; beta-BE 37.1 22 0.00076 21.6 2.1 19 164-182 7-25 (28)
13 1q1v_A DEK protein; winged-hel 35.3 1.2E+02 0.0042 23.6 6.9 45 242-286 10-57 (70)
14 3av9_A Integrase, IN; protein- 27.2 1.3E+02 0.0046 27.3 7.2 67 356-434 28-94 (183)
15 2bw3_A Transposase; DNA recomb 27.1 1.5E+02 0.005 32.4 8.6 70 386-459 130-201 (534)
16 2nrr_A Uvrabc system protein C 25.4 1.1E+02 0.0039 27.9 5.9 64 358-441 37-100 (159)
17 2x78_A Integrase; viral protei 24.0 1.5E+02 0.0051 27.2 6.9 70 357-434 13-83 (200)
18 2ahq_A Sigma-54, RNA polymeras 22.6 1.3E+02 0.0043 24.0 5.0 47 244-291 16-65 (76)
19 2fcj_A Small toprim domain pro 22.4 81 0.0028 27.4 4.1 41 407-450 41-84 (119)
20 2nrt_A Uvrabc system protein C 22.1 1.6E+02 0.0056 28.4 6.7 64 358-441 42-105 (220)
21 1c6v_A Protein (SIV integrase) 21.7 2.2E+02 0.0075 24.7 7.4 64 357-432 9-72 (164)
22 3f2k_A Histone-lysine N-methyl 21.3 2.6E+02 0.0088 26.6 8.2 62 367-431 65-134 (226)
23 2l0z_A Glycoprotein G2; zinc-b 20.2 34 0.0012 23.7 0.9 17 614-630 20-36 (42)
No 1
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=88.93 E-value=0.47 Score=38.31 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=34.8
Q ss_pred eeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccccc
Q 044407 198 HAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRR 238 (702)
Q Consensus 198 ~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~ 238 (702)
-|-.++|...|||++-.+.+..++....++++.++|||+..
T Consensus 37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 45679999999999999988776677778899999999864
No 2
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=88.81 E-value=0.45 Score=38.29 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=35.2
Q ss_pred eeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccccc
Q 044407 198 HAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRR 238 (702)
Q Consensus 198 ~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~ 238 (702)
-|-.++|...|||++-.+.+..++....++++.++|||+..
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 46669999999999999988777777888999999999864
No 3
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=74.86 E-value=12 Score=36.65 Aligned_cols=70 Identities=9% Similarity=-0.103 Sum_probs=48.9
Q ss_pred CcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHH
Q 044407 357 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGID 433 (702)
Q Consensus 357 ~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~ 433 (702)
..++.+|.|+.... ++-.+.++.+|...+ +++|+.+- +++.+.-..+|+.+....+ .|.+|.||+.....
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG----RPKAIKTDNGSCFT 79 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEEECSCHHHH
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC----CCcEEEECCCCccc
Confidence 45889999987543 344566666776554 45577765 7888777777777666662 36799999998754
No 4
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=72.88 E-value=4.7 Score=33.13 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=33.2
Q ss_pred CceEEEeeecCeeEEEEeec---CCCccEEEEEEEeCceeEEEeEecCcccccccc
Q 044407 187 GFKLCIMENRGHAVSYECSD---LRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRH 239 (702)
Q Consensus 187 gf~~~~~kS~~~r~~~~C~~---~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~~ 239 (702)
||.|...+....+....|.. .+|++++.... .. + .....|||++..
T Consensus 27 Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~---~~---~-~~~~~HnH~p~~ 75 (87)
T 2rpr_A 27 SFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG---HR---I-MVMRSHCHQPDL 75 (87)
T ss_dssp TEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET---TE---E-EECSCCSSCCCH
T ss_pred CEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC---CC---E-ECCCCcCCCCch
Confidence 67777766667778899987 58999988753 22 2 256789998753
No 5
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=67.65 E-value=35 Score=34.97 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=38.6
Q ss_pred ccCceeEEeeeccCCCCeEEEEEEEee---cCChhhHHHHHHHHHHHhc--ccC----CCcEEEEccCch
Q 044407 370 PYNSVMLVAAALDGNNGILPIAFCEVQ---VEDLDSWVFFIKNINNALR--LEH----GEGLCIMGDGDN 430 (702)
Q Consensus 370 ~y~~~ll~~vg~d~~~~~~plafalv~---~E~~es~~wfl~~l~~~~~--~~~----~~p~~iitD~~~ 430 (702)
..++.++++.+++..| .+++.++. .-+.+.|.-+|+.+...+. .+. ..+.+|+.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 3555666666777666 56777776 5678888888887765542 011 346789999865
No 6
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=59.98 E-value=29 Score=30.36 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=45.4
Q ss_pred cEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407 358 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY 434 (702)
Q Consensus 358 ~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 434 (702)
.++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+.... + |..|.||+.....+
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY--T---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS--C---CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh--C---CcEEecCCchHhhH
Confidence 5788999988332 5566667665544 55555 4777777777776666655 2 88999999987654
No 7
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=57.43 E-value=44 Score=32.30 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=38.4
Q ss_pred CcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHH
Q 044407 357 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGID 433 (702)
Q Consensus 357 ~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~ 433 (702)
..++.+|.|+..++| ++++ +|...+ +++++.+- .++.....-++..+.... ++.+|.||+.....
T Consensus 9 ~~~w~~D~t~~~g~~---~l~~--vD~~Sr-~i~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 9 PGIWQLDCTHLEGKV---ILVA--VHVASG-YIEAEVIP-AETGQETAYFLLKLAGRW-----PVKTIHTDNGSNFT 73 (239)
T ss_dssp GGEEEEEEEEETTEE---EEEE--ECTTTC-CEEEECCS-SSSTTHHHHHHHHHHHHS-----CCCEEEECCCHHHH
T ss_pred CCEEEEeccccCCeE---EEEE--EECCCC-eEEEEEeC-CCCHHHHHHHHHHHHHhc-----CCcEEEecCcHHHH
Confidence 358999999983322 3333 365444 45666544 455555544444443333 35899999998654
No 8
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=44.22 E-value=76 Score=28.24 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=48.2
Q ss_pred CCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407 356 CRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY 434 (702)
Q Consensus 356 ~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 434 (702)
-..++.+|.|+.... +|..+.++.+|...+ +++|+.+- +.+.+.-..+|+.+.... +.|..|.||+.....+
T Consensus 10 p~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 10 PLQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHS
T ss_pred CCCEEEeeeeecccC-CCCEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhhh
Confidence 345789999987543 345666777777655 44566665 677766666666655555 2366999999987754
No 9
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=39.68 E-value=63 Score=28.71 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=45.3
Q ss_pred CCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHH
Q 044407 356 CRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGID 433 (702)
Q Consensus 356 ~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~ 433 (702)
-..++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+....+|..+....+ +.+|.||+.....
T Consensus 8 p~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 8 SPGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFT 73 (163)
T ss_dssp CTTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGGG
T ss_pred CCCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhhh
Confidence 346889999998653 4666677666544 56555 56677777777766665552 3689999998654
No 10
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=37.79 E-value=93 Score=29.27 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=44.3
Q ss_pred cEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHH
Q 044407 358 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYA 435 (702)
Q Consensus 358 ~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~A 435 (702)
.++.+|.|+..++ +.++.+|...+.. .++. +.+.+.+...-+|..+.... + |..|.||+.....++
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~---g--p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMF---A--PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHH---C--CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHh---C--CcEEEeCCCchhhhH
Confidence 5778998876443 5566667666554 5554 45666666666666665555 2 789999999877544
No 11
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=37.36 E-value=59 Score=33.24 Aligned_cols=73 Identities=15% Similarity=0.004 Sum_probs=50.0
Q ss_pred CCcEEEEeceeeeccc---Cc---eeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcE--EEEcc
Q 044407 356 CRRLLAVDGWKINNPY---NS---VMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGL--CIMGD 427 (702)
Q Consensus 356 ~~~vi~iD~T~~~~~y---~~---~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~--~iitD 427 (702)
-..++.+|+|+..... .| ..+..+.+|...+ .++|+.+...++.++..-.|.......+ .|. .|.+|
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G----~P~~~~i~sD 89 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG----IPEDFHITID 89 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC----EESSCEEECC
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC----CCCCcEEEee
Confidence 4568999999764421 23 3455666776555 4589999988888887777766655542 355 99999
Q ss_pred CchHHH
Q 044407 428 GDNGID 433 (702)
Q Consensus 428 ~~~~l~ 433 (702)
+..+..
T Consensus 90 nG~~f~ 95 (327)
T 1bco_A 90 NTRGAA 95 (327)
T ss_dssp CTTSTT
T ss_pred Cchhhc
Confidence 987653
No 12
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=37.09 E-value=22 Score=21.59 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=17.0
Q ss_pred ccccEeCCHHHHHHHHHHH
Q 044407 164 YHGQRFRDVSHFRKAIEVF 182 (702)
Q Consensus 164 ~~G~~F~s~~e~~~ai~~y 182 (702)
+.|.+|.+..|++++|..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 6899999999999999765
No 13
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=35.32 E-value=1.2e+02 Score=23.59 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=36.3
Q ss_pred ccchhhHHHHHHhhhhcc-C-CCCCHHHHHHHHHHHh-CcccCHHHHH
Q 044407 242 FQDRPKWISAIYLHRWKL-Q-PNLRTVDIRDEIEATY-GVVCHEAKLL 286 (702)
Q Consensus 242 r~~s~~~ia~~~~~~i~~-~-~~~~~~~I~~~l~~~~-g~~is~~~~~ 286 (702)
..+|...|...+.+.+++ + ..++.++|...|.+.+ |+.++..+.+
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~ 57 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDF 57 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHH
Confidence 356777788888888876 3 4789999999999999 9999976544
No 14
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=27.18 E-value=1.3e+02 Score=27.32 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred CCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407 356 CRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY 434 (702)
Q Consensus 356 ~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 434 (702)
-..++.+|.|+..++| +++ .+|..-+.. +|+.+ .+++.+....++..+.... ++.+|.||+.....+
T Consensus 28 p~~~w~~D~~~~~g~~---~l~--~vD~~Sr~~-~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~ef~s 94 (183)
T 3av9_A 28 SPGIWQLDCTHLEGKV---ILV--AVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRW-----PVKTVHTDNGSNFTS 94 (183)
T ss_dssp CTTEEEEEEEEETTEE---EEE--EEETTTTEE-EEEEE-SSCCHHHHHHHHHHHHHHS-----CCCEEECSSHHHHHC
T ss_pred CCCEEEEeccccCCcE---EEE--EEECCCCCE-EEEEe-CCccchHHHHHHHHHHHHc-----CCcEEEecCchhcch
Confidence 4568889999883332 333 346655544 66654 4555555555544444444 238999999987653
No 15
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=27.08 E-value=1.5e+02 Score=32.36 Aligned_cols=70 Identities=9% Similarity=0.157 Sum_probs=47.4
Q ss_pred CeEEEEEEEeec--CChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhh
Q 044407 386 GILPIAFCEVQV--EDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKR 459 (702)
Q Consensus 386 ~~~plafalv~~--E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~ 459 (702)
+..+|++.-+.. .+.++..-.+..+.+..++....-+.++||....+..|+... .|..|..|.+.-+.+.
T Consensus 130 ~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 130 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHHH
T ss_pred EEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHHH
Confidence 345677766663 566666666666555554333335678999999888887653 5889999999876553
No 16
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=25.39 E-value=1.1e+02 Score=27.91 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=45.7
Q ss_pred cEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHH
Q 044407 358 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVE 437 (702)
Q Consensus 358 ~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~ 437 (702)
-|++-||-..+..|+- |-|-. +..+.|.-+=+.+..+.. ....|-.|+.|+.+|-.+|..
T Consensus 37 mVVf~~g~p~K~~YRr------------------f~I~~-~g~DDya~M~Evl~RR~~-r~~~PDLilIDGGkgQl~aA~ 96 (159)
T 2nrr_A 37 LVVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYS-KHPLPNLLFVDGGIGQVNAAI 96 (159)
T ss_dssp EEEEETTEECGGGCEE------------------EEC------CHHHHHHHHHHHHHT-TSCCCSEEEESSCHHHHHHHH
T ss_pred EEEEeCCccChhhCce------------------eecCC-CCCCHHHHHHHHHHHHhc-cCCCCCEEEEeCCHHHHHHHH
Confidence 4788899999888875 22222 224788888888888873 124688999999999999998
Q ss_pred Hhcc
Q 044407 438 EFLP 441 (702)
Q Consensus 438 ~vfP 441 (702)
+++-
T Consensus 97 ~vl~ 100 (159)
T 2nrr_A 97 EALK 100 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 17
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=23.96 E-value=1.5e+02 Score=27.18 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=44.7
Q ss_pred CcEEEEec-eeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407 357 RRLLAVDG-WKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY 434 (702)
Q Consensus 357 ~~vi~iD~-T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 434 (702)
..++.+|- ++.... +|..+.++.+|..-+. .+++.+ .+.+.+...-+| .... ..+.|..|.||+.....+
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l---~~~~--~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSL---NVLT--SIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHH---HHHT--TTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHH---HHHH--HhCCCcEEEecCCcceeh
Confidence 35788886 444433 5667777778876554 456665 666666554444 3444 235678999999987644
No 18
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=22.62 E-value=1.3e+02 Score=23.97 Aligned_cols=47 Identities=4% Similarity=-0.062 Sum_probs=35.7
Q ss_pred chhhHHHHHHhhhhcc-CC--CCCHHHHHHHHHHHhCcccCHHHHHHHHHH
Q 044407 244 DRPKWISAIYLHRWKL-QP--NLRTVDIRDEIEATYGVVCHEAKLLCAAKR 291 (702)
Q Consensus 244 ~s~~~ia~~~~~~i~~-~~--~~~~~~I~~~l~~~~g~~is~~~~~rak~~ 291 (702)
.|+..|...+++.|.+ ++ -++-.+|.+.|++. |+.++..++.+.|+.
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRRTVaKYRe~ 65 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARRTVAKYREM 65 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHHHHHHHHHH
Confidence 3556677777777765 33 36778898888766 999999999888764
No 19
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=22.36 E-value=81 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=31.3
Q ss_pred HHHHHHHhcccCCCcEEEEccCchH---HHHHHHHhcccccchhhHH
Q 044407 407 IKNINNALRLEHGEGLCIMGDGDNG---IDYAVEEFLPKAVYRQCCL 450 (702)
Q Consensus 407 l~~l~~~~~~~~~~p~~iitD~~~~---l~~Ai~~vfP~a~h~~C~~ 450 (702)
++.++... ....+.|+||.+.+ |.+-|.+.||++.|.+-..
T Consensus 41 l~~I~~~~---~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r 84 (119)
T 2fcj_A 41 LEELADEL---EGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDR 84 (119)
T ss_dssp HHHHHHHT---TTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCT
T ss_pred HHHHHHHh---cCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccC
Confidence 44444444 46789999999975 8888999999999887544
No 20
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=22.05 E-value=1.6e+02 Score=28.38 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=47.7
Q ss_pred cEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHH
Q 044407 358 RLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVE 437 (702)
Q Consensus 358 ~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~ 437 (702)
-|++-||-..+..|+- |-+-. +..++|.-+=+.+..+.. ....|-.|+.|+.+|-.+|..
T Consensus 42 mVvf~~g~p~k~~YRr------------------f~i~~-~g~DDya~m~Evl~RR~~-r~~~PDLiliDGGkgQl~~a~ 101 (220)
T 2nrt_A 42 LVVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYS-KHPLPNLLFVDGGIGQVNAAI 101 (220)
T ss_dssp EEEEETTEECGGGCEE------------------EEEEC-SSCCHHHHHHHHHHHHHT-TSCCCSEEEESSSHHHHHHHH
T ss_pred EEEEeCCccChhhCce------------------eeCCC-CCCCHHHHHHHHHHHHhc-cCCCCCEEEEeCCHHHHHHHH
Confidence 3788889998888875 22222 234788888888888873 124688999999999999999
Q ss_pred Hhcc
Q 044407 438 EFLP 441 (702)
Q Consensus 438 ~vfP 441 (702)
+|+-
T Consensus 102 ~vl~ 105 (220)
T 2nrt_A 102 EALK 105 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 21
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=21.70 E-value=2.2e+02 Score=24.67 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=39.6
Q ss_pred CcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHH
Q 044407 357 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGI 432 (702)
Q Consensus 357 ~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l 432 (702)
..++.+|.|+. +|. +.++.+|..-+ +.+++.+ .+.+.+.+..++..+.... +|.+|.||+....
T Consensus 9 ~~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~~f 72 (164)
T 1c6v_A 9 LGTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVI-PQETGRQTALFLLKLAGRW-----PITHLHTDNGANF 72 (164)
T ss_dssp TTEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEEC-SSCSHHHHHHHHHHHHTTS-----CCCEEECCCCSST
T ss_pred CCEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEc-CCCchHHHHHHHHHHHHhc-----CCCEEEeCCchhh
Confidence 45788999988 333 33334776655 4456644 4566666665555443333 3689999998754
No 22
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=21.29 E-value=2.6e+02 Score=26.60 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=38.3
Q ss_pred eecccCceeEEeeeccCCCCeEEEEEEEee---cCChhhHHHHHHHHHHHhc-----ccCCCcEEEEccCchH
Q 044407 367 INNPYNSVMLVAAALDGNNGILPIAFCEVQ---VEDLDSWVFFIKNINNALR-----LEHGEGLCIMGDGDNG 431 (702)
Q Consensus 367 ~~~~y~~~ll~~vg~d~~~~~~plafalv~---~E~~es~~wfl~~l~~~~~-----~~~~~p~~iitD~~~~ 431 (702)
.++++++.+.+.++.+++|.+ ++.+++ +=|.+.|.-+|+.+...+. +....+.+|+.|..+.
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~---~~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~ 134 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLI---HYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARP 134 (226)
T ss_dssp ----CCCEEEEEEEEETTEEE---EEEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHH
T ss_pred ccccCCcceEEEEEeecCCcE---EEEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCcc
Confidence 345667788888888888765 445553 5677888888877644331 1124567889998653
No 23
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=20.22 E-value=34 Score=23.68 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=14.3
Q ss_pred CCceeecCccccCCccc
Q 044407 614 EAQSCSCGLWQISGIPC 630 (702)
Q Consensus 614 ~~~tCsC~~fe~~GiPC 630 (702)
....|+|+.|...|.|=
T Consensus 20 ~~~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 20 SLGGCRCGKYPNLKKPT 36 (42)
T ss_dssp TTSSBTTTTBCCCCCCC
T ss_pred CCceeccccccCCCCcc
Confidence 56789999999999873
Done!