BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044408
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
          Length = 1284

 Score = 30.4 bits (67), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 31/51 (60%)

Query: 10  SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
           S + +I   I N+ +GI+ +L+Y ++  L  LA++P+++    V +  ++G
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSG 877


>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
          Length = 1284

 Score = 30.4 bits (67), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 31/51 (60%)

Query: 10  SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
           S + +I   I N+ +GI+ +L+Y ++  L  LA++P+++    V +  ++G
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSG 877


>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
           AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
           Complexed With Mta
 pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
           AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
           Complexed With Mta
          Length = 314

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 28  RTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGF 65
           RT+  AFR+  +Y   +P    N G LLA+ A   A F
Sbjct: 211 RTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAF 248


>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
           Thermus Thermophilus
 pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
           Thermus Thermophilus
          Length = 314

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 28  RTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGF 65
           RT+  AFR+  +Y   +P    N G LLA+ A   A F
Sbjct: 211 RTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAF 248


>pdb|2WVK|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
           Thermophilus Hb27 Apoprotein
 pdb|2WVK|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
           Thermophilus Hb27 Apoprotein
 pdb|2WVL|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
           Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
           And Mg(Ii)
 pdb|2WVL|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
           Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
           And Mg(Ii)
          Length = 391

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 14  LIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFI 67
           L++SG    A G++  L++A   G  Y+  +   ++  G +   V  Y+AGF +
Sbjct: 139 LVRSG---KAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYVRAYAAGFLM 189


>pdb|2WVM|A Chain A, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
           Thermus Thermophilus Hb27 In Complex With
           Gdp-alpha-d-mannose And Mg(ii)
 pdb|2WVM|B Chain B, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
           Thermus Thermophilus Hb27 In Complex With
           Gdp-alpha-d-mannose And Mg(ii)
          Length = 391

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 14  LIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFI 67
           L++SG    A G++  L++A   G  Y+  +   ++  G +   V  Y+AGF +
Sbjct: 139 LVRSG---KAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYVRAYAAGFLM 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,684,478
Number of Sequences: 62578
Number of extensions: 84253
Number of successful extensions: 183
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 6
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)