BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044408
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2
Length = 170
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 6 VDWISHMKLIKSGIN---NVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
+W++H L++ N A+G+++T +Y R GLAYL ML VMSFN GV L A+AG++
Sbjct: 81 TEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHA 140
Query: 63 AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
GF +FGSQ FRN + + +PP C
Sbjct: 141 VGFMLFGSQTFRNT---SDDRKTNYVPPSGC 168
>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1
Length = 158
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Query: 2 FSLTVDWISHMKLIK-SGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
++ +W++H +++ SG N A+G+ +T +Y + GL+YL ML VMSFN GV + A+AG
Sbjct: 65 LAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAG 124
Query: 61 YSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPN 92
Y GFF+FGS F+ K Q ++L PP+
Sbjct: 125 YGVGFFLFGSTTFK---KPSDDQKTAELLPPS 153
>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1
Length = 145
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 2 FSLTVDWISHMKLIKS-GINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
++ V+W++H +++ G + A G+++T +Y + GLAYL ML VMSFN GV + A+AG
Sbjct: 60 LAVIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAG 119
Query: 61 YSAGFFIFGSQVFRNNFKIE-PYQDL 85
++ GF +FGS F+N E P++ L
Sbjct: 120 FAVGFMLFGSTAFKNPSDDEKPFEQL 145
>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1
Length = 151
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 7 DWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFF 66
+ +S +KSG ++ G+L+T +Y R L+YL ML VMSFN GV +AA+AG+ GF
Sbjct: 70 ECLSRCGFMKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFM 129
Query: 67 IFGSQVFR 74
IFGS+ FR
Sbjct: 130 IFGSRAFR 137
>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2
Length = 145
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 DWI---SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSA 63
+W+ S IK G + +A RT MY + G +YL +L V+SFN GV LAA+ G++
Sbjct: 70 EWLARCSDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHAL 129
Query: 64 GFFIFGSQVFRNN 76
GF +F + FRN
Sbjct: 130 GFAVFRGRAFRNR 142
>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2
SV=1
Length = 184
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 29 TLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQV 72
T ++A R G+AYL ML VMSFN+GVLLAAVAG++ GF + S+V
Sbjct: 115 TAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFLLARSRV 158
>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2
SV=1
Length = 183
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 26 ILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFI 67
+L ++A R GLAYL ML VMSFN GVLLAAVAG++AGF +
Sbjct: 103 LLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLL 144
>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2
SV=1
Length = 161
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 24 SGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQ 83
G+ R ++ R G+AYL ML +MSFN GV L AVAG++AGF F + + ++E +
Sbjct: 95 GGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAFRAGLCGGPAQVE--E 152
Query: 84 DLSDLP 89
D + P
Sbjct: 153 DRKNDP 158
>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1
SV=1
Length = 151
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 31 MYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
++A R G+AYL ML +MSFN GV LA VAG++AGF F
Sbjct: 90 VHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127
>sp|Q93VM8|COPT5_ARATH Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1
Length = 146
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 16 KSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQ 71
KSG + A L++ + YL ML MSFN GV +A V G +AG+ +F S
Sbjct: 77 KSGTRSAAKAA-SVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVGLTAGYAVFRSD 131
>sp|Q5ZD08|COPT3_ORYSJ Copper transporter 3 OS=Oryza sativa subsp. japonica GN=COPT3 PE=2
SV=1
Length = 150
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 48 SFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
SFN+GVLLAAVAG++AGF F + + +K +L P C
Sbjct: 110 SFNVGVLLAAVAGHAAGFLAFRAGLCGGGYKK------GELAPAAC 149
>sp|Q7YXD4|P80_DICDI Protein P80 OS=Dictyostelium discoideum GN=p80 PE=2 SV=1
Length = 530
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 26 ILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRN 75
I+R ++A +Y ML M+FN+ + A +AG G +FG +RN
Sbjct: 474 IIRGCLHAIELTCSYALMLVAMTFNVALFFAVIAGVLVGNILFGR--YRN 521
>sp|Q6Z0Q9|COP52_ORYSJ Putative copper transporter 5.2 OS=Oryza sativa subsp. japonica
GN=COPT5.2 PE=3 SV=1
Length = 176
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 38 LAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
+ YL ML VMSFN GV LA VAG +AG F
Sbjct: 123 VGYLLMLAVMSFNGGVFLAVVAGLAAGHLAF 153
>sp|O94722|CTR4_SCHPO Copper transport protein ctr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ctr4 PE=1 SV=1
Length = 289
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 27 LRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQV 72
LR+ Y ++ +AY+AML M +N V+L G G+F+FG+
Sbjct: 207 LRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFGADT 252
>sp|P21439|MDR3_HUMAN Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2
Length = 1286
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 10 SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
+ + LI I N+ +GI+ + +Y ++ L LA++P+++ + V + +AG
Sbjct: 830 TRLALIAQNIANLGTGIIISFIYGWQLTLLLLAVVPIIAVSGIVEMKLLAG 880
>sp|P96687|YDFJ_BACSU Membrane protein YdfJ OS=Bacillus subtilis (strain 168) GN=ydfJ
PE=2 SV=1
Length = 724
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 18 GINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVF 73
G++ + IL ++ A FG +A LP+++ IG+ G S G + G+QVF
Sbjct: 175 GVSEIVGIILAFVVLAITFGSLLIAGLPILTALIGL------GVSIGLVLIGTQVF 224
>sp|P21447|MDR1A_MOUSE Multidrug resistance protein 1A OS=Mus musculus GN=Abcb1a PE=1 SV=3
Length = 1276
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 10 SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
S + +I I N+ +GI+ +L+Y ++ L LA++P+++ V + ++G
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSG 877
>sp|Q06686|CTR3_YEAST Copper transport protein CTR3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CTR3 PE=1 SV=1
Length = 241
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 26 ILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
++R ++ ++GL+Y+ ML M +N ++++ + G G FIF
Sbjct: 168 MIRVTIFVLQWGLSYIIMLLFMYYNGYIIISCLIGAIVGRFIF 210
>sp|Q9CPU9|COPT2_MOUSE Probable low affinity copper uptake protein 2 OS=Mus musculus
GN=Slc31a2 PE=1 SV=1
Length = 143
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 28 RTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFI 67
++L++ + + Y ML VMS+N + L V G + G+++
Sbjct: 96 QSLVHVIQVVIGYFVMLAVMSYNTWIFLGVVLGSAVGYYL 135
>sp|P42864|GPT_LEIAM UDP-N-acetylglucosamine--dolichyl-phosphate
N-acetylglucosaminephosphotransferase OS=Leishmania
amazonensis GN=NAGT PE=3 SV=1
Length = 466
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 1 WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
WFS TV+ S++K+ +SG L+Y L YL+ML + N +LA V G
Sbjct: 219 WFSFTVNHRSYVKVTESG---------AALIYLGPVYLVYLSMLCIFCTNSINILAGVNG 269
Query: 61 YSAG--FFIFGSQVFRNNFKIEPYQDLS 86
G I + V N F++ + L+
Sbjct: 270 VEVGQSIVIAVASVVYNLFQMRLDRQLT 297
>sp|O15432|COPT2_HUMAN Probable low affinity copper uptake protein 2 OS=Homo sapiens
GN=SLC31A2 PE=1 SV=1
Length = 143
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 28 RTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFI 67
++L++ + + Y ML VMS+N + L V G + G+++
Sbjct: 96 QSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYL 135
>sp|Q9P7F9|CTR5_SCHPO Copper transport protein ctr5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ctr5 PE=1 SV=1
Length = 173
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 21 NVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVF 73
V ++R MY+ + A + ML VMSFN +L G GFF+F S +
Sbjct: 108 TVWQQLIRAAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLFASDTY 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,894,131
Number of Sequences: 539616
Number of extensions: 1089026
Number of successful extensions: 2816
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2790
Number of HSP's gapped (non-prelim): 28
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)