Query 044408
Match_columns 93
No_of_seqs 106 out of 556
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.9 4.7E-13 1.6E-17 72.4 0.0 28 24-51 1-28 (29)
2 2ls4_A High affinity copper up 98.0 7.1E-09 2.4E-13 54.7 0.0 24 49-72 1-24 (26)
3 2i68_A Protein EMRE; transmemb 38.5 85 0.0029 20.8 6.1 67 2-71 9-82 (137)
4 2k9p_A Pheromone alpha factor 34.7 54 0.0018 20.4 3.8 20 24-43 17-36 (80)
5 2ls2_A High affinity copper up 28.4 18 0.00062 18.1 0.0 10 2-11 17-26 (26)
6 2zt9_E Cytochrome B6-F complex 16.6 1.2E+02 0.0042 15.8 2.5 21 37-64 4-24 (31)
7 3gia_A Uncharacterized protein 15.9 3.3E+02 0.011 19.8 7.2 23 51-73 402-424 (444)
8 2jwa_A Receptor tyrosine-prote 14.9 1.4E+02 0.005 16.6 2.7 15 53-67 21-35 (44)
9 2k21_A Potassium voltage-gated 13.9 97 0.0033 21.4 2.0 24 40-67 53-76 (138)
10 1iij_A ERBB-2 receptor protein 13.3 1.1E+02 0.0037 16.3 1.8 16 52-67 16-31 (35)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.91 E-value=4.7e-13 Score=72.38 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 044408 24 SGILRTLMYAFRFGLAYLAMLPVMSFNI 51 (93)
Q Consensus 24 ~~l~~a~l~~~q~~l~YlLMLivMTfN~ 51 (93)
.|++|+++|++|.++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999997
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.98 E-value=7.1e-09 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHhhhhHhhhcccc
Q 044408 49 FNIGVLLAAVAGYSAGFFIFGSQV 72 (93)
Q Consensus 49 fN~~i~~avilG~~~G~~~F~~~~ 72 (93)
||+|+++||++|+++|||+|++++
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 899999999999999999999874
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=38.51 E-value=85 Score=20.81 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=32.6
Q ss_pred hHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhhhhHhhhccc
Q 044408 2 FSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVM-------SFNIGVLLAAVAGYSAGFFIFGSQ 71 (93)
Q Consensus 2 la~~~E~l~~~~~~k~g~~~~~~~l~~a~l~~~q~~l~YlLMLivM-------TfN~~i~~avilG~~~G~~~F~~~ 71 (93)
+|++.|.....-+.+..+.. +....++-.+-..++|+++..++ .|..+..+..++...+|.++|+.+
T Consensus 9 ~ail~ev~~~~~lK~s~g~~---~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 9 GAILAEVIGTTLMKFSEGFT---RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666766654333322111 11222344455666666666555 345555667777777777777654
No 4
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=34.66 E-value=54 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044408 24 SGILRTLMYAFRFGLAYLAM 43 (93)
Q Consensus 24 ~~l~~a~l~~~q~~l~YlLM 43 (93)
..+-.++.|++|.+.+-++.
T Consensus 17 ~~~~~~I~~G~~iGAs~lll 36 (80)
T 2k9p_A 17 STVTQAILFGVRSGAAALTL 36 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999985444
No 5
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=28.36 E-value=18 Score=18.15 Aligned_cols=10 Identities=0% Similarity=0.115 Sum_probs=7.8
Q ss_pred hHHHHHHHhh
Q 044408 2 FSLTVDWISH 11 (93)
Q Consensus 2 la~~~E~l~~ 11 (93)
+++++|+|+.
T Consensus 17 l~~~YE~Lk~ 26 (26)
T 2ls2_A 17 LAMFYEGLKX 26 (26)
Confidence 6788998863
No 6
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=16.62 E-value=1.2e+02 Score=15.79 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 044408 37 GLAYLAMLPVMSFNIGVLLAAVAGYSAG 64 (93)
Q Consensus 37 ~l~YlLMLivMTfN~~i~~avilG~~~G 64 (93)
.++|++.|.+ ++++.+|..+|
T Consensus 4 ~i~y~~~l~~-------~~~iA~GL~fG 24 (31)
T 2zt9_E 4 IVAYIGFLAL-------FTGIAAGLLFG 24 (31)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHH
Confidence 4555555443 44555665555
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=15.92 E-value=3.3e+02 Score=19.78 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhHhhhccccc
Q 044408 51 IGVLLAAVAGYSAGFFIFGSQVF 73 (93)
Q Consensus 51 ~~i~~avilG~~~G~~~F~~~~~ 73 (93)
.++.+.+.++..+.+..+.+++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ 424 (444)
T 3gia_A 402 FYGIIATFIGVLIFEIIYRKVTK 424 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44666667777777777755433
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.85 E-value=1.4e+02 Score=16.56 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhhHhh
Q 044408 53 VLLAAVAGYSAGFFI 67 (93)
Q Consensus 53 i~~avilG~~~G~~~ 67 (93)
+++.+++|..++.++
T Consensus 21 vll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 21 ILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhe
Confidence 556677777666554
No 9
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=13.87 E-value=97 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhHhh
Q 044408 40 YLAMLPVMSFNIGVLLAAVAGYSAGFFI 67 (93)
Q Consensus 40 YlLMLivMTfN~~i~~avilG~~~G~~~ 67 (93)
|+-.|++|.|=+ ..++|..+||.=
T Consensus 53 ylYIL~vmgffg----ff~~GImLsYiR 76 (138)
T 2k21_A 53 ALYVLMVLGFFG----FFTLGIMLSYIR 76 (138)
T ss_dssp TCHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH----HHHHHHHHHHhH
Confidence 333455555433 444555556653
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=13.28 E-value=1.1e+02 Score=16.34 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhHhh
Q 044408 52 GVLLAAVAGYSAGFFI 67 (93)
Q Consensus 52 ~i~~avilG~~~G~~~ 67 (93)
++++.+++|..+|.++
T Consensus 16 glll~vii~l~~~~~i 31 (35)
T 1iij_A 16 GVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHhheEE
Confidence 3777788888887765
Done!