Query 044408
Match_columns 93
No_of_seqs 106 out of 556
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 04:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044408.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044408hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 17.7 1.2E+02 0.0091 20.4 5.5 44 29-72 6-49 (248)
2 d2uuia1 f.56.1.1 (A:2-147) Leu 11.7 1.7E+02 0.012 17.9 6.3 59 2-60 21-82 (146)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 9.3 1.1E+02 0.0082 14.5 2.2 13 53-65 10-22 (32)
4 d2q7ra1 f.56.1.1 (A:1-139) Ara 9.1 2.1E+02 0.015 17.3 5.1 41 20-60 47-87 (139)
5 d1ppjw_ f.23.14.1 (W:) Subunit 7.9 1.4E+02 0.0099 16.4 2.5 22 49-70 16-37 (62)
6 d1m56c_ f.25.1.1 (C:) Bacteria 7.5 2.2E+02 0.016 18.7 4.0 26 24-50 200-225 (265)
7 d1q90m_ f.23.25.1 (M:) PetM su 7.2 81 0.0059 15.4 1.1 15 57-71 16-30 (34)
8 d1xjua_ d.2.1.3 (A:) Endolysin 6.6 61 0.0044 19.7 0.5 11 43-53 80-90 (158)
9 d1swya_ d.2.1.3 (A:) Phage T4 6.5 61 0.0045 19.8 0.5 11 43-53 98-108 (164)
10 d1k28a3 d.2.1.3 (A:130-345) Ta 5.8 98 0.0072 20.2 1.2 12 42-53 146-157 (216)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=17.69 E-value=1.2e+02 Score=20.36 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhHhhhcccc
Q 044408 29 TLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQV 72 (93)
Q Consensus 29 a~l~~~q~~l~YlLMLivMTfN~~i~~avilG~~~G~~~F~~~~ 72 (93)
+++-.+.....|.++++..-=+.++.+.+++-..++.++|-+++
T Consensus 6 ~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 6 SVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 46677778888888877777777766666666666777775543
No 2
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.72 E-value=1.7e+02 Score=17.93 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=33.3
Q ss_pred hHHHHHHHhhccccc-cCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044408 2 FSLTVDWISHMKLIK-SGI--NNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60 (93)
Q Consensus 2 la~~~E~l~~~~~~k-~g~--~~~~~~l~~a~l~~~q~~l~YlLMLivMTfN~~i~~avilG 60 (93)
+|.-|...++..-.+ |+. ++...+..|+=--.++..--++..+...-++..-..+.++|
T Consensus 21 ~s~~V~~~R~k~kv~~p~~~g~~~fera~RaH~N~~E~~P~fL~ll~l~~l~~~~~~a~~lG 82 (146)
T d2uuia1 21 FSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCG 82 (146)
T ss_dssp HHHHHHHHHHHTTCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccCHHHHHHHH
Confidence 344444444333333 543 56677788887778888777776655555554223344555
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.28 E-value=1.1e+02 Score=14.55 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhH
Q 044408 53 VLLAAVAGYSAGF 65 (93)
Q Consensus 53 i~~avilG~~~G~ 65 (93)
+|++...|..+|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566666766664
No 4
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.07 E-value=2.1e+02 Score=17.31 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044408 20 NNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60 (93)
Q Consensus 20 ~~~~~~l~~a~l~~~q~~l~YlLMLivMTfN~~i~~avilG 60 (93)
++...+..|+=-=+++..-.+++++...-++..-..+.++|
T Consensus 47 ~~~f~ra~RaH~N~~E~~p~~L~~l~~~~l~~~~~~a~~~G 87 (139)
T d2q7ra1 47 TLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAG 87 (139)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccCHHHHHHHH
Confidence 45677788887778888888888877776665223344455
No 5
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.86 E-value=1.4e+02 Score=16.40 Aligned_cols=22 Identities=18% Similarity=-0.076 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHhhhhHhhhcc
Q 044408 49 FNIGVLLAAVAGYSAGFFIFGS 70 (93)
Q Consensus 49 fN~~i~~avilG~~~G~~~F~~ 70 (93)
=|.-+..+|++|+.++.-.|+.
T Consensus 16 RnStf~~tI~~gAf~fE~~fD~ 37 (62)
T d1ppjw_ 16 RTSTFALTIVVGALFFERAFDQ 37 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3555778889999999888853
No 6
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.49 E-value=2.2e+02 Score=18.65 Aligned_cols=26 Identities=15% Similarity=0.062 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044408 24 SGILRTLMYAFRFGLAYLAMLPVMSFN 50 (93)
Q Consensus 24 ~~l~~a~l~~~q~~l~YlLMLivMTfN 50 (93)
.-..-+.+|++++.+|- ++|+++.+.
T Consensus 200 ~ff~lTG~Hg~HV~~G~-i~l~~~~~~ 225 (265)
T d1m56c_ 200 NFFMATGFHGFHVIVGT-IFLLVCLIR 225 (265)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34667889999999994 455555443
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.20 E-value=81 Score=15.37 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=10.6
Q ss_pred HHHHhhhhHhhhccc
Q 044408 57 AVAGYSAGFFIFGSQ 71 (93)
Q Consensus 57 vilG~~~G~~~F~~~ 71 (93)
.++|..+||...+.+
T Consensus 16 tl~glaigfvllrve 30 (34)
T d1q90m_ 16 TLVGLAIGFVLLRVE 30 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeeH
Confidence 367888888876543
No 8
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.60 E-value=61 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=9.0
Q ss_pred HHHHHhhhHHH
Q 044408 43 MLPVMSFNIGV 53 (93)
Q Consensus 43 MLivMTfN~~i 53 (93)
-|+.|+||.|.
T Consensus 80 alvs~~fN~G~ 90 (158)
T d1xjua_ 80 AMTSAAFNMGC 90 (158)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHhhccCc
Confidence 48889999885
No 9
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=6.54 E-value=61 Score=19.76 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=9.3
Q ss_pred HHHHHhhhHHH
Q 044408 43 MLPVMSFNIGV 53 (93)
Q Consensus 43 MLivMTfN~~i 53 (93)
.|+.|+||.|.
T Consensus 98 alvs~~fNlG~ 108 (164)
T d1swya_ 98 ALINMVFQMGE 108 (164)
T ss_dssp HHHHHHHHHCH
T ss_pred HHeechhhcCC
Confidence 68999999874
No 10
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=5.82 E-value=98 Score=20.19 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=10.1
Q ss_pred HHHHHHhhhHHH
Q 044408 42 AMLPVMSFNIGV 53 (93)
Q Consensus 42 LMLivMTfN~~i 53 (93)
--|+-|+||.|.
T Consensus 146 ~ALvsm~FNlG~ 157 (216)
T d1k28a3 146 MALENMAFQMGV 157 (216)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhcceeccCC
Confidence 568899999986
Done!