BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044411
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 130 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ + L T D II+M +GKI+ G K
Sbjct: 189 RTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHK 222
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ + L T D II+M +GKI+ G K
Sbjct: 195 RTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHK 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKG 194
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ L T D II+M +GKI+ G K
Sbjct: 195 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHK 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 132 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ L T D II+M +GKI+ G K
Sbjct: 191 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHK 224
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 132 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ L T D II+M +GKI+ G K
Sbjct: 191 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHK 224
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 130 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ L T D II+M +GKI+ G K
Sbjct: 189 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHK 222
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T+VG+ G+SGGQ++R+ LV K + D+ T+ LD + I+ + +
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
I+ L T D II+M +GKI+ G K
Sbjct: 195 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHK 228
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 77 IDTYMKT---DYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDK 133
I+T+ K DY + + LD T + +SGGQ++ + + K + +D+
Sbjct: 95 INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE 154
Query: 134 ITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGPR 193
T+ LD++ +++ L LA + T++ + QP+ + + + +L+ + + R
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQNFKFGETR 213
Query: 194 KVCPDRKAVADFVLEVISRKDQAQY 218
+ A F L + + QAQY
Sbjct: 214 NILTSENLTALFHLPMFEQ--QAQY 236
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165
R SGGQK+RL+ LV K + +D T+ +D T +I L L T +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI---LDGLKRYTKGCTTFII 534
Query: 166 LQPSPETFDLFDDIILMAEGKILYHGPRK 194
Q P L D I+++ EGK+ G K
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHK 562
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
DT++G+ +SGGQ++R+ L+ + +D+ T+ LD + I L L
Sbjct: 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK- 528
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
+ T+L+ + T + D+I+++ EG+I+ G
Sbjct: 529 -NKTVLV--IAHRLSTIEQADEILVVDEGEIIERG 560
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167
+S GQK+R+ +LV K + +D+ T GLD +I+ L + TI+I+
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA--- 200
Query: 168 PSPETFDL------FDDIILMAEGKILYHG-PRKVCPDRKAV 202
T D+ D++ +M EG+++ G P++V +++ +
Sbjct: 201 ----THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI 238
>pdb|3SOJ|A Chain A, Francisella Tularensis Pilin Pile
pdb|3SOJ|B Chain B, Francisella Tularensis Pilin Pile
Length = 115
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 122 LVGPIKAMFMDKITNGLDIS-TSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180
++G +KA + I N LDIS ++ T + + ATI I+L Q SP+ F +DII
Sbjct: 16 IIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDII 75
Query: 181 LMA 183
++
Sbjct: 76 RLS 78
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165
+ +SGGQ++R+ G LV +D+ + LD + Q+ + L H +I +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRL-HKRLGRTMIYV 190
Query: 166 LQPSPETFDLFDDIILMAEGKI--------LYHGP 192
E L D I+++ G++ LYH P
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 89 ILGLDICADTLVGDAIRRGI--SGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI 146
I+ L DT VG+ RG+ SGGQK+RL+ + + + +D+ T+ LD+ + I
Sbjct: 460 IMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 147 VTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194
L L+ D T LI + S T D I+++ G I+ G +
Sbjct: 517 QEALDVLSK--DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHR 560
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165
+ +SGGQ++R+ G LV +D+ + LD + Q+ + L H +I +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRTMIYV 190
Query: 166 LQPSPETFDLFDDIILMAEGKI--------LYHGP 192
E L D I+++ G++ LYH P
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165
+ +SGGQ++R+ G LV +D+ + LD + Q+ + L H +I +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRTMIYV 190
Query: 166 LQPSPETFDLFDDIILMAEGKI--------LYHGP 192
E L D I+++ G++ LYH P
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 97 DTLVGDAIRRG--ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154
DTLVG+ RG +SGGQK+R+ LV K + +D+ T+ LD + + L A
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 155 HITDATILISLLQPSPETFDL---FDDIILMAEGK 186
TI+I+ + D+ FD +++ +G
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T VGD + +SGGQK+R+ LV + +D+ T+ LD + S ++V A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAV 202
I+I+ + + DL I+++ GK+ HG + +K +
Sbjct: 1220 GRTCIVIAHRLSTIQNADL---IVVIQNGKVKEHGTHQQLLAQKGI 1262
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 97 DTLVGDAIRRG--ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154
DTLVG+ RG +SGGQK+R+ LV K + +D+ T+ LD + + L A
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 155 HITDATILISLLQPSPETFDL---FDDIILMAEGK 186
TI+I+ + D+ FD +++ +G
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156
+T VGD + +SGGQK+R+ LV + +D+ T+ LD + S ++V A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 157 TDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAV 202
I+I+ + + DL I+++ GK+ HG + +K +
Sbjct: 1220 GRTCIVIAHRLSTIQNADL---IVVIQNGKVKEHGTHQQLLAQKGI 1262
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 20/108 (18%)
Query: 97 DTLVGDAIRRG--ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCL---- 150
+TLVGD RG +SGGQK+R+ LV K + +D+ T+ LD + + L
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 151 ---------QHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILY 189
L+ I +A ++IS + + ++ D LMA+ + Y
Sbjct: 602 KGRTTIIIAHRLSTIRNADLIISC--KNGQVVEVGDHRALMAQQGLYY 647
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 97 DTLVGDAIRRG--ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLD 139
+T VGD RG +SGGQK+R+ LV K + +D+ T+ LD
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 75 PDIDTYMKTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKI 134
PD D ++ +GLD + D + +SGG+KRR+ ++V + +D+
Sbjct: 109 PDRDPVPLVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 135 TNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGPR 193
GLD ++ ++ + ILIS + D ++++ +GK ++ G R
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDGTR 222
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 75 PDIDTYMKTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKI 134
PD D ++ +GLD + D + +SGG+KRR+ ++V + +D+
Sbjct: 111 PDRDPVPLVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 167
Query: 135 TNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGPR 193
GLD ++ ++ + ILIS + D ++++ +GK ++ G R
Sbjct: 168 LVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDGTR 224
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161
D+ +SGGQK+R+ L K + D+ T+ LD +T+ I+ L+ + TI
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 162 LISLLQPSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAVADFVLEVIS--RKDQAQYW 219
L+ + + D + +++ G+++ D V EV S + AQ +
Sbjct: 218 LL-ITHEXDVVKRICDCVAVISNGELIEQ-------------DTVSEVFSHPKTPLAQKF 263
Query: 220 FHNELPHSFVPVDMFHKKFKESPF 243
+ L H +P D + ++ + PF
Sbjct: 264 IQSTL-HLDIPED-YQERLQAEPF 285
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161
D+ +SGGQK+R+ L K + D+ T+ LD +T+ I+ L+ + TI
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 162 LI 163
L+
Sbjct: 218 LL 219
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167
+SGGQK+RL ML + + +D+ + LD + +I L+ L + IL++
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVT--- 197
Query: 168 PSPETFDLFDDIILMAEGKILYHG 191
E D D I+ ++ G I + G
Sbjct: 198 HELEYLDDMDFILHISNGTIDFCG 221
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161
D+ +SGGQK+R+ L K + D+ T+ LD +T+ I+ L+ + TI
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 162 LI 163
L+
Sbjct: 195 LL 196
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 92 LDICADTLVGDAIRRGI--SGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTC 149
+D DT++G+ G+ SGGQ++R+ L+ + +D+ T+ LD + I
Sbjct: 466 MDNGLDTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 150 LQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAV 202
L L + ++ L T + D+I+++ +G I+ G + + V
Sbjct: 523 LDELQKNRTSLVIAHRL----STIEKADEIVVVEDGVIVERGTHNDLLEHRGV 571
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 92 LDICADTLVGDAIRRGI--SGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTC 149
+D DT++G+ G+ SGGQ++R+ L+ + +D+ T+ LD + I
Sbjct: 466 MDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 150 LQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
L L + ++ L T + D+I+++ +G I+ G
Sbjct: 523 LDELQKNRTSLVIAHRL----STIEQADEIVVVEDGIIVERG 560
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 97 DTLVGDAIRRGI--SGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154
+T+VG+ +G+ SGGQK+R+ L+ K + +D+ T+ LD + + L L
Sbjct: 474 NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL- 529
Query: 155 HITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
+ T+L+ + T + + ++ +GKI +G
Sbjct: 530 -MDGRTVLV--IAHRLSTIKNANMVAVLDQGKITEYG 563
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 97 DTLVGDAIRRGI--SGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154
+T+VG+ +G+ SGGQK+R+ L+ K + +D+ T+ LD + + L L
Sbjct: 505 NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL- 560
Query: 155 HITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
+ T+L+ S T + + ++ +GKI +G
Sbjct: 561 -MDGRTVLVIAHHLS--TIKNANMVAVLDQGKITEYG 594
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167
+SGGQ++R+ LV + + +D+ + LD ++ L+ L T + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTH 192
Query: 168 PSPETFDLFDDIILMAEGKILYHG-PRKVC--PDRKAVADFV 206
E + D I ++ EG+IL G P +V P K V F+
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFL 234
>pdb|3IZR|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 171
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 40 RETLDFSTYCQGVGSRADILLELS---GR--EEEARIIPDPDIDTYMKTDYNLKILGLDI 94
++ + F YC GVG A S GR + AR I +D + N ++ GLD+
Sbjct: 55 KQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFI----LDLLKNAESNAEVKGLDV 110
Query: 95 CADTLVGDAIRRGISGGQKRRLTTGEMLVGP 125
DTL I+ + Q+RR + P
Sbjct: 111 --DTLYVSHIQVNQAQKQRRRTYRAHGRINP 139
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 35/197 (17%)
Query: 16 GEFVPQK---LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARII 72
G FVP K ++ Y L+ P MTV + + F L+L R +
Sbjct: 73 GIFVPPKDRDIAMVFQSYALY-PHMTVYDNIAFP-------------LKL-------RKV 111
Query: 73 PDPDIDTYMKTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMD 132
P +ID ++ L LGL T + + R +SGGQ++R+ G +V + MD
Sbjct: 112 PRQEIDQRVREVAEL--LGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD 164
Query: 133 KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGP 192
+ + LD ++ L+ L T I + E + D I +M G + G
Sbjct: 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Query: 193 RKVCPDRKA---VADFV 206
D+ A VA F+
Sbjct: 224 PDEVYDKPANTFVAGFI 240
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167
+SGGQ++R+ LV K + D+ + LD + + ++HL T + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT-SVYVTH 192
Query: 168 PSPETFDLFDDIILMAEGKILYHG-PRKV--CPDRKAVADFV 206
E + I + +GK++ +G P +V P VA F+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFI 234
>pdb|4DZ4|A Chain A, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|B Chain B, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|C Chain C, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|D Chain D, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|E Chain E, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|F Chain F, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
Length = 324
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 138 LDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILY--HGPRKV 195
LD++T+F+ L A + A++ ++ L P P FD FDD+ ++ G + H P +
Sbjct: 56 LDLATTFRSGARLGPSA-VRAASVQLAELNPYPWGFDPFDDLAVIDYGDCWFDAHHPLSI 114
Query: 196 CP 197
P
Sbjct: 115 KP 116
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILI 163
+SGGQ++R+ L + D+ T LD T +I+ L+ L T+++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167
+SGGQ++R+ +V + MD+ + LD + ++ L T I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 168 PSPETFDLFDDIILMAEGKILYHG-PRKVC--PDRKAVADFV 206
E + D I +M G++L G P +V P+ VA F+
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI 243
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167
+SGGQ++R+ +V + MD+ + LD + ++ L T I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 168 PSPETFDLFDDIILMAEGKILYHG-PRKVC--PDRKAVADFV 206
E + D I +M G++L G P +V P+ VA F+
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI 242
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 87 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI 146
LK LG+ D V D +SGG+ +R+ L+ +D+ + LD+ +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 147 VTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
++HL + T L+ ++ D D +++ EG+ HG
Sbjct: 511 SRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPGRHG 553
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 87 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI 146
LK LG+ D V D +SGG+ +R+ L+ +D+ + LD+ +
Sbjct: 442 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
Query: 147 VTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
++HL + T L+ ++ D D +++ EG+ HG
Sbjct: 497 SRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPGRHG 539
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 89 ILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT 148
I G DT VG+ + +SGGQ++ + L+ + + +D+ T+ LD ++
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 149 CLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
L T+L+ Q S + I+ + EG + G
Sbjct: 198 LLYESPEWASRTVLLITHQLS--LAERAHHILFLKEGSVCEQG 238
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 89 ILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT 148
I G DT VG+ + +SGGQ++ + L+ + + +D T+ LD ++
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 149 CLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHG 191
L T+L+ Q S + I+ + EG + G
Sbjct: 198 LLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQG 238
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165
R +SGGQ++R+ LV + +D+ + LD ++ + T+L+
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 166 LQPSPETFDLFDDIILMAEGKILYHG 191
P+ + F + D + ++ +GK++ G
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 177 DDIILMAEGKILYHGPRKVCPDRKAVADFVLEV 209
DD ++ E KILY PR+ P+ D+V+E+
Sbjct: 212 DDPVVFLEPKILYRAPREEVPE----GDYVVEI 240
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 89 ILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI 146
I GL DT V +A + +SGGQ++ + L+ + +D T+ LD ++ Q+
Sbjct: 137 ISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
>pdb|3SCM|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
Length = 245
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 244 GKKLEEDLSELYDKSESKKRSVSFAVFSLSRWE--VFKACMSRELLLAKRNYF 294
G + DLSE YD S KK S S V S + E VF C S LL + +F
Sbjct: 55 GSTEKGDLSEGYDASREKKSSFSLTVTSAQKNEMAVF-LCASGSLLDVREVFF 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,967,301
Number of Sequences: 62578
Number of extensions: 397549
Number of successful extensions: 990
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 61
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)