Query 044411
Match_columns 363
No_of_seqs 415 out of 3153
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 2.5E-55 5.4E-60 481.1 31.9 345 19-363 236-604 (1470)
2 KOG0065 Pleiotropic drug resis 100.0 7.4E-55 1.6E-59 453.5 21.8 342 7-363 174-526 (1391)
3 KOG0061 Transporter, ABC super 100.0 2.9E-53 6.3E-58 432.0 27.3 311 20-363 102-424 (613)
4 TIGR00956 3a01205 Pleiotropic 100.0 3.5E-51 7.6E-56 449.5 32.6 325 21-363 137-487 (1394)
5 KOG0065 Pleiotropic drug resis 100.0 1.4E-51 3E-56 429.0 19.9 327 2-363 835-1190(1391)
6 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-49 3.3E-54 408.0 30.5 315 20-363 97-427 (617)
7 PLN03211 ABC transporter G-25; 100.0 1.1E-48 2.4E-53 402.3 32.4 314 21-363 139-473 (659)
8 PLN03140 ABC transporter G fam 100.0 1.3E-48 2.7E-53 428.4 33.3 311 21-363 952-1282(1470)
9 TIGR00956 3a01205 Pleiotropic 100.0 7.7E-46 1.7E-50 407.4 33.9 309 20-363 834-1164(1394)
10 COG1126 GlnQ ABC-type polar am 100.0 1.5E-35 3.1E-40 256.4 14.4 160 20-207 75-237 (240)
11 COG1135 AbcC ABC-type metal io 100.0 2.3E-33 5E-38 254.5 13.1 163 20-210 81-246 (339)
12 COG1131 CcmA ABC-type multidru 100.0 5.7E-32 1.2E-36 253.4 14.0 148 20-195 76-223 (293)
13 COG1125 OpuBA ABC-type proline 100.0 6.2E-32 1.3E-36 238.6 11.3 150 19-196 72-223 (309)
14 COG1127 Ttg2A ABC-type transpo 100.0 6E-32 1.3E-36 237.4 11.1 153 19-198 82-235 (263)
15 COG3840 ThiQ ABC-type thiamine 100.0 1.2E-31 2.6E-36 225.6 11.9 165 11-203 60-224 (231)
16 COG3839 MalK ABC-type sugar tr 100.0 1.2E-31 2.6E-36 251.3 12.6 168 11-206 64-234 (338)
17 COG3842 PotA ABC-type spermidi 100.0 1E-31 2.2E-36 253.1 11.2 172 10-208 65-239 (352)
18 COG4555 NatA ABC-type Na+ tran 100.0 3.8E-31 8.3E-36 226.1 11.3 147 20-195 73-219 (245)
19 COG3638 ABC-type phosphate/pho 100.0 2.7E-31 5.9E-36 232.7 10.5 156 20-195 79-234 (258)
20 COG1120 FepC ABC-type cobalami 100.0 5.3E-31 1.1E-35 238.3 12.3 161 20-204 74-234 (258)
21 COG1136 SalX ABC-type antimicr 100.0 1.8E-30 3.9E-35 230.5 14.5 138 21-187 82-220 (226)
22 COG1118 CysA ABC-type sulfate/ 100.0 8.7E-31 1.9E-35 237.2 12.1 163 18-206 73-238 (345)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.3E-30 9.3E-35 231.3 15.7 155 22-202 75-231 (254)
24 COG1117 PstB ABC-type phosphat 100.0 1.9E-30 4.1E-35 223.9 11.5 159 20-206 86-248 (253)
25 COG1116 TauB ABC-type nitrate/ 100.0 3.3E-30 7.2E-35 229.1 13.4 142 20-189 70-213 (248)
26 COG1137 YhbG ABC-type (unclass 100.0 1.4E-30 3E-35 222.4 10.2 170 11-207 65-237 (243)
27 PRK11650 ugpC glycerol-3-phosp 100.0 5.3E-30 1.2E-34 246.2 15.2 150 19-196 73-222 (356)
28 TIGR03265 PhnT2 putative 2-ami 100.0 7.1E-30 1.5E-34 245.1 15.0 156 13-196 67-222 (353)
29 PRK11432 fbpC ferric transport 100.0 7.6E-30 1.7E-34 244.5 15.0 156 13-196 69-224 (351)
30 TIGR03258 PhnT 2-aminoethylpho 100.0 1.2E-29 2.7E-34 243.9 15.0 149 20-196 77-226 (362)
31 PRK09452 potA putrescine/sperm 100.0 1.9E-29 4.1E-34 243.5 15.0 161 18-206 82-245 (375)
32 PRK11607 potG putrescine trans 100.0 3.4E-29 7.4E-34 242.1 15.1 150 18-195 87-236 (377)
33 COG0410 LivF ABC-type branched 100.0 2.9E-29 6.3E-34 219.8 12.5 168 10-206 63-234 (237)
34 TIGR02314 ABC_MetN D-methionin 100.0 5.3E-29 1.1E-33 237.7 15.4 147 21-195 81-227 (343)
35 COG0411 LivG ABC-type branched 100.0 3.3E-29 7.3E-34 221.1 13.0 179 11-205 65-246 (250)
36 COG4148 ModC ABC-type molybdat 100.0 6.2E-30 1.4E-34 228.5 8.1 146 18-197 72-217 (352)
37 PRK13537 nodulation ABC transp 100.0 5.2E-29 1.1E-33 235.3 14.5 147 20-195 78-224 (306)
38 COG4175 ProV ABC-type proline/ 100.0 2.1E-29 4.4E-34 228.8 10.6 162 20-209 104-268 (386)
39 COG2884 FtsE Predicted ATPase 100.0 7.7E-29 1.7E-33 210.2 13.3 146 18-192 75-220 (223)
40 TIGR01186 proV glycine betaine 100.0 9.7E-29 2.1E-33 237.2 15.3 148 21-196 70-217 (363)
41 PRK10851 sulfate/thiosulfate t 100.0 8.8E-29 1.9E-33 237.5 15.1 153 20-196 72-224 (353)
42 PRK11000 maltose/maltodextrin 100.0 1.5E-28 3.2E-33 237.6 15.1 148 20-195 73-220 (369)
43 COG1122 CbiO ABC-type cobalt t 100.0 1.6E-28 3.6E-33 221.5 12.6 147 20-194 77-224 (235)
44 TIGR01188 drrA daunorubicin re 100.0 2.7E-28 5.9E-33 230.3 14.1 145 21-194 65-209 (302)
45 TIGR01187 potA spermidine/putr 100.0 5E-28 1.1E-32 230.4 15.3 148 20-195 40-187 (325)
46 cd03259 ABC_Carb_Solutes_like 100.0 6.8E-28 1.5E-32 216.4 15.0 143 21-191 71-213 (213)
47 cd03261 ABC_Org_Solvent_Resist 100.0 5.4E-28 1.2E-32 220.3 14.6 147 21-194 76-222 (235)
48 COG4161 ArtP ABC-type arginine 100.0 4.9E-28 1.1E-32 200.2 11.7 147 20-194 80-226 (242)
49 PRK13536 nodulation factor exp 100.0 8.5E-28 1.8E-32 229.6 14.8 147 20-195 112-258 (340)
50 PRK11153 metN DL-methionine tr 99.9 1.5E-27 3.3E-32 228.7 15.0 148 21-196 81-228 (343)
51 cd03301 ABC_MalK_N The N-termi 99.9 2.5E-27 5.4E-32 212.7 15.2 143 21-191 71-213 (213)
52 cd03296 ABC_CysA_sulfate_impor 99.9 2.1E-27 4.5E-32 217.0 14.6 150 21-194 73-222 (239)
53 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.8E-27 6.2E-32 213.4 15.2 146 21-194 72-219 (220)
54 PRK10070 glycine betaine trans 99.9 2.5E-27 5.4E-32 230.1 15.3 146 22-195 106-251 (400)
55 PRK11144 modC molybdate transp 99.9 1.8E-27 4E-32 228.9 14.3 141 21-195 75-215 (352)
56 cd03265 ABC_DrrA DrrA is the A 99.9 2.9E-27 6.2E-32 213.4 14.5 146 21-194 72-217 (220)
57 COG1124 DppF ABC-type dipeptid 99.9 2.7E-27 6E-32 208.9 13.7 146 21-196 81-229 (252)
58 TIGR03415 ABC_choXWV_ATP choli 99.9 2.5E-27 5.4E-32 228.5 14.7 147 22-196 106-252 (382)
59 TIGR01288 nodI ATP-binding ABC 99.9 2.6E-27 5.7E-32 223.7 14.4 145 21-194 76-220 (303)
60 cd03268 ABC_BcrA_bacitracin_re 99.9 2.9E-27 6.4E-32 211.5 13.6 138 21-191 71-208 (208)
61 cd03298 ABC_ThiQ_thiamine_tran 99.9 4E-27 8.6E-32 211.1 14.3 143 21-191 69-211 (211)
62 PRK10771 thiQ thiamine transpo 99.9 3.9E-27 8.4E-32 214.2 14.0 147 21-195 70-216 (232)
63 TIGR03522 GldA_ABC_ATP gliding 99.9 3.8E-27 8.3E-32 222.3 14.1 145 21-195 74-218 (301)
64 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5.9E-27 1.3E-31 217.7 15.0 145 22-194 102-246 (269)
65 TIGR02142 modC_ABC molybdenum 99.9 4.1E-27 8.9E-32 226.7 14.1 144 21-194 74-217 (354)
66 cd03258 ABC_MetN_methionine_tr 99.9 5.3E-27 1.2E-31 213.4 14.1 146 21-194 81-226 (233)
67 cd03218 ABC_YhbG The ABC trans 99.9 5.6E-27 1.2E-31 213.1 14.3 145 22-195 75-219 (232)
68 cd03219 ABC_Mj1267_LivG_branch 99.9 6.2E-27 1.4E-31 213.4 14.5 155 22-195 75-229 (236)
69 TIGR00960 3a0501s02 Type II (G 99.9 4.5E-27 9.7E-32 211.5 13.3 138 21-187 79-216 (216)
70 PRK09536 btuD corrinoid ABC tr 99.9 8.1E-27 1.8E-31 226.6 15.0 152 21-197 76-227 (402)
71 COG0444 DppD ABC-type dipeptid 99.9 9.2E-27 2E-31 214.0 14.5 168 21-211 87-259 (316)
72 PRK15079 oligopeptide ABC tran 99.9 8.5E-27 1.8E-31 222.1 14.8 149 21-195 97-248 (331)
73 cd03256 ABC_PhnC_transporter A 99.9 9.8E-27 2.1E-31 212.7 14.5 154 21-194 77-230 (241)
74 TIGR01277 thiQ thiamine ABC tr 99.9 1.7E-26 3.7E-31 207.3 15.4 145 20-192 68-212 (213)
75 cd03266 ABC_NatA_sodium_export 99.9 1.1E-26 2.4E-31 209.2 14.1 142 21-191 77-218 (218)
76 TIGR02315 ABC_phnC phosphonate 99.9 1.1E-26 2.3E-31 212.8 14.1 155 21-195 78-232 (243)
77 cd03297 ABC_ModC_molybdenum_tr 99.9 1.9E-26 4.1E-31 207.2 15.2 141 21-191 74-214 (214)
78 COG4598 HisP ABC-type histidin 99.9 4.3E-27 9.3E-32 197.8 10.1 148 21-196 92-239 (256)
79 PRK13637 cbiO cobalt transport 99.9 1.4E-26 3.1E-31 217.0 14.9 147 21-195 82-231 (287)
80 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.2E-26 2.7E-31 212.3 14.1 146 21-194 74-221 (242)
81 cd03260 ABC_PstB_phosphate_tra 99.9 1.9E-26 4.1E-31 209.0 15.1 146 21-194 80-225 (227)
82 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.2E-26 2.6E-31 209.0 13.3 138 21-187 81-218 (218)
83 cd03234 ABCG_White The White s 99.9 3.7E-26 7.9E-31 207.0 16.2 147 20-191 79-226 (226)
84 PRK11831 putative ABC transpor 99.9 2.2E-26 4.7E-31 213.9 15.0 148 21-195 83-230 (269)
85 PRK11629 lolD lipoprotein tran 99.9 3.6E-26 7.8E-31 208.0 15.9 143 22-193 87-229 (233)
86 TIGR01184 ntrCD nitrate transp 99.9 2.7E-26 5.9E-31 208.4 14.8 145 24-194 56-200 (230)
87 PRK11247 ssuB aliphatic sulfon 99.9 2.7E-26 5.9E-31 211.5 15.0 140 21-194 80-219 (257)
88 cd03269 ABC_putative_ATPase Th 99.9 2.8E-26 6E-31 205.5 14.5 142 21-191 69-210 (210)
89 PRK13634 cbiO cobalt transport 99.9 2E-26 4.3E-31 216.3 14.1 145 21-194 84-231 (290)
90 PRK13651 cobalt transporter AT 99.9 2.3E-26 5E-31 216.9 14.4 146 21-195 104-251 (305)
91 PRK09473 oppD oligopeptide tra 99.9 3.6E-26 7.8E-31 217.8 15.7 151 22-196 97-249 (330)
92 TIGR03740 galliderm_ABC gallid 99.9 4.9E-26 1.1E-30 205.7 15.7 140 22-194 70-209 (223)
93 PRK11264 putative amino-acid A 99.9 3E-26 6.5E-31 210.7 14.5 146 21-194 84-229 (250)
94 cd03264 ABC_drug_resistance_li 99.9 3.2E-26 7E-31 205.2 14.1 141 21-191 71-211 (211)
95 PRK11308 dppF dipeptide transp 99.9 4.8E-26 1E-30 216.7 15.8 148 21-195 91-241 (327)
96 cd03226 ABC_cobalt_CbiO_domain 99.9 2.6E-26 5.7E-31 204.9 13.0 135 21-188 70-205 (205)
97 cd03263 ABC_subfamily_A The AB 99.9 3.3E-26 7.1E-31 206.4 13.7 144 21-194 74-217 (220)
98 PRK13650 cbiO cobalt transport 99.9 2.8E-26 6.1E-31 214.2 13.6 145 21-194 80-225 (279)
99 PRK09493 glnQ glutamine ABC tr 99.9 4.3E-26 9.4E-31 208.4 14.4 146 21-195 76-222 (240)
100 PRK13647 cbiO cobalt transport 99.9 4.1E-26 8.8E-31 212.5 14.3 145 21-194 78-223 (274)
101 PRK11022 dppD dipeptide transp 99.9 6.7E-26 1.5E-30 215.7 16.1 151 22-196 89-241 (326)
102 PRK09984 phosphonate/organopho 99.9 5E-26 1.1E-30 210.7 14.7 156 21-196 85-240 (262)
103 cd03257 ABC_NikE_OppD_transpor 99.9 6.4E-26 1.4E-30 205.5 15.1 145 21-191 81-228 (228)
104 cd03299 ABC_ModC_like Archeal 99.9 5.4E-26 1.2E-30 207.1 14.4 146 21-194 70-215 (235)
105 TIGR02211 LolD_lipo_ex lipopro 99.9 6.2E-26 1.4E-30 204.7 14.6 138 22-188 83-220 (221)
106 cd03224 ABC_TM1139_LivF_branch 99.9 3.6E-26 7.8E-31 206.4 13.0 143 21-194 74-217 (222)
107 PRK10895 lipopolysaccharide AB 99.9 4.7E-26 1E-30 208.3 13.8 147 21-195 77-223 (241)
108 COG1123 ATPase components of v 99.9 6.4E-26 1.4E-30 222.7 15.4 161 21-206 90-255 (539)
109 PRK11248 tauB taurine transpor 99.9 1.1E-25 2.4E-30 207.5 16.2 145 22-194 70-216 (255)
110 PRK13643 cbiO cobalt transport 99.9 6.1E-26 1.3E-30 212.8 14.5 145 21-195 83-230 (288)
111 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 8.4E-26 1.8E-30 206.0 15.0 144 22-194 74-217 (236)
112 PRK13636 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 212.2 14.5 147 21-195 81-228 (283)
113 cd03292 ABC_FtsE_transporter F 99.9 5.6E-26 1.2E-30 204.0 13.6 138 21-187 77-214 (214)
114 PRK10619 histidine/lysine/argi 99.9 8.7E-26 1.9E-30 208.5 15.2 146 21-195 91-238 (257)
115 PRK13646 cbiO cobalt transport 99.9 5.5E-26 1.2E-30 212.9 13.9 145 21-194 84-231 (286)
116 PRK11300 livG leucine/isoleuci 99.9 6.1E-26 1.3E-30 209.3 13.9 161 22-195 80-240 (255)
117 cd03300 ABC_PotA_N PotA is an 99.9 1E-25 2.3E-30 204.9 15.2 146 21-194 71-216 (232)
118 TIGR02673 FtsE cell division A 99.9 6.2E-26 1.3E-30 203.7 13.5 137 21-186 78-214 (214)
119 TIGR02770 nickel_nikD nickel i 99.9 7.7E-26 1.7E-30 205.5 13.8 145 22-194 62-211 (230)
120 TIGR00972 3a0107s01c2 phosphat 99.9 9.7E-26 2.1E-30 207.0 14.6 144 21-194 81-228 (247)
121 TIGR03411 urea_trans_UrtD urea 99.9 1E-25 2.2E-30 206.2 14.3 152 22-195 77-228 (242)
122 PRK11614 livF leucine/isoleuci 99.9 4.1E-26 8.9E-31 208.2 11.6 145 21-196 79-224 (237)
123 PRK13548 hmuV hemin importer A 99.9 1.2E-25 2.5E-30 207.7 14.7 147 21-195 75-227 (258)
124 TIGR00968 3a0106s01 sulfate AB 99.9 1.1E-25 2.5E-30 205.3 14.4 147 21-195 71-217 (237)
125 cd03267 ABC_NatA_like Similar 99.9 1.6E-25 3.5E-30 204.2 15.4 143 21-191 93-236 (236)
126 TIGR03005 ectoine_ehuA ectoine 99.9 1.3E-25 2.8E-30 206.8 14.6 147 21-194 86-232 (252)
127 PRK13631 cbiO cobalt transport 99.9 1.1E-25 2.4E-30 213.6 14.4 145 21-195 115-262 (320)
128 TIGR02769 nickel_nikE nickel i 99.9 1.4E-25 3E-30 208.1 14.7 149 21-196 87-238 (265)
129 TIGR03410 urea_trans_UrtE urea 99.9 1E-25 2.2E-30 204.7 13.4 145 21-196 74-219 (230)
130 PRK13641 cbiO cobalt transport 99.9 1.2E-25 2.7E-30 210.7 14.3 146 21-195 84-231 (287)
131 PRK10908 cell division protein 99.9 1.6E-25 3.5E-30 202.3 14.5 139 21-188 78-216 (222)
132 COG4181 Predicted ABC-type tra 99.9 9.6E-26 2.1E-30 188.3 11.9 140 21-189 87-226 (228)
133 PRK14247 phosphate ABC transpo 99.9 1.7E-25 3.6E-30 205.7 14.9 146 21-194 81-230 (250)
134 PRK10575 iron-hydroxamate tran 99.9 1E-25 2.2E-30 209.0 13.4 151 21-195 84-234 (265)
135 PRK14268 phosphate ABC transpo 99.9 1.5E-25 3.3E-30 207.0 14.5 143 21-194 92-238 (258)
136 PRK13652 cbiO cobalt transport 99.9 1.6E-25 3.6E-30 208.8 14.7 147 21-195 77-224 (277)
137 PRK13635 cbiO cobalt transport 99.9 1.2E-25 2.7E-30 209.7 13.8 145 21-194 80-225 (279)
138 PRK11124 artP arginine transpo 99.9 1.9E-25 4E-30 204.5 14.4 146 21-195 81-227 (242)
139 PRK11231 fecE iron-dicitrate t 99.9 1.3E-25 2.8E-30 207.1 13.3 151 21-196 75-225 (255)
140 PRK10253 iron-enterobactin tra 99.9 1.2E-25 2.7E-30 208.4 13.1 151 21-195 80-230 (265)
141 PRK10584 putative ABC transpor 99.9 2.8E-25 6.2E-30 201.4 15.2 139 22-189 88-226 (228)
142 cd03225 ABC_cobalt_CbiO_domain 99.9 1.4E-25 3.1E-30 200.9 13.0 137 21-186 74-211 (211)
143 PRK14273 phosphate ABC transpo 99.9 2.6E-25 5.5E-30 205.0 14.9 145 21-195 87-235 (254)
144 PRK15093 antimicrobial peptide 99.9 2.1E-25 4.6E-30 212.8 14.6 155 22-195 89-245 (330)
145 cd03235 ABC_Metallic_Cations A 99.9 2.7E-25 5.8E-30 199.5 14.2 145 21-191 67-213 (213)
146 PRK13640 cbiO cobalt transport 99.9 2E-25 4.4E-30 208.7 13.9 145 21-194 83-228 (282)
147 PRK13632 cbiO cobalt transport 99.9 2.6E-25 5.6E-30 206.9 14.5 145 21-194 82-227 (271)
148 cd03262 ABC_HisP_GlnQ_permease 99.9 2.6E-25 5.6E-30 199.5 14.0 138 21-187 75-213 (213)
149 PRK14267 phosphate ABC transpo 99.9 3E-25 6.6E-30 204.4 14.4 146 21-194 84-233 (253)
150 PRK14242 phosphate transporter 99.9 4.9E-25 1.1E-29 203.0 15.8 148 21-194 86-233 (253)
151 PRK14245 phosphate ABC transpo 99.9 4.6E-25 1E-29 202.8 15.1 149 21-195 83-231 (250)
152 PRK14250 phosphate ABC transpo 99.9 2.4E-25 5.2E-30 203.6 13.0 141 21-194 76-217 (241)
153 COG4152 ABC-type uncharacteriz 99.9 2.4E-25 5.1E-30 195.8 12.2 145 21-194 71-215 (300)
154 PRK03695 vitamin B12-transport 99.9 3.5E-25 7.6E-30 203.4 13.9 144 22-195 69-219 (248)
155 TIGR03269 met_CoM_red_A2 methy 99.9 3.5E-25 7.5E-30 224.2 15.2 146 21-194 108-254 (520)
156 PRK13644 cbiO cobalt transport 99.9 3.2E-25 7E-30 206.5 13.7 145 21-195 76-221 (274)
157 PRK13549 xylose transporter AT 99.9 3.7E-25 8E-30 223.2 15.2 150 21-196 81-230 (506)
158 PRK10418 nikD nickel transport 99.9 5.6E-25 1.2E-29 202.8 14.9 145 21-195 78-227 (254)
159 TIGR01978 sufC FeS assembly AT 99.9 5.8E-25 1.3E-29 201.2 14.9 151 23-194 78-230 (243)
160 PRK13639 cbiO cobalt transport 99.9 4.9E-25 1.1E-29 205.4 14.4 146 21-195 77-223 (275)
161 PRK10762 D-ribose transporter 99.9 4.5E-25 9.8E-30 222.3 15.3 151 21-196 78-228 (501)
162 PRK10261 glutathione transport 99.9 4E-25 8.7E-30 227.7 15.2 149 21-196 400-551 (623)
163 PRK13638 cbiO cobalt transport 99.9 4.1E-25 8.8E-30 205.6 13.7 145 21-194 76-221 (271)
164 TIGR03771 anch_rpt_ABC anchore 99.9 6.5E-25 1.4E-29 198.4 14.6 150 21-196 48-199 (223)
165 PRK13645 cbiO cobalt transport 99.9 3.5E-25 7.6E-30 207.9 13.3 146 21-194 89-236 (289)
166 PRK13633 cobalt transporter AT 99.9 4.7E-25 1E-29 206.1 14.0 147 21-196 84-231 (280)
167 PRK14239 phosphate transporter 99.9 7.9E-25 1.7E-29 201.5 15.2 145 21-195 85-233 (252)
168 PRK14257 phosphate ABC transpo 99.9 9E-25 2E-29 208.0 15.6 151 20-196 161-311 (329)
169 PRK13649 cbiO cobalt transport 99.9 6.6E-25 1.4E-29 205.1 14.3 145 21-195 84-231 (280)
170 PRK14256 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 200.4 15.7 146 21-195 84-233 (252)
171 PRK13648 cbiO cobalt transport 99.9 6.6E-25 1.4E-29 204.0 14.1 146 21-195 82-228 (269)
172 PRK15112 antimicrobial peptide 99.9 6.6E-25 1.4E-29 203.7 14.0 146 22-194 87-235 (267)
173 TIGR03873 F420-0_ABC_ATP propo 99.9 7.3E-25 1.6E-29 202.2 14.2 150 21-195 74-223 (256)
174 cd03233 ABC_PDR_domain1 The pl 99.9 8.7E-25 1.9E-29 194.6 14.2 122 20-191 81-202 (202)
175 PRK15439 autoinducer 2 ABC tra 99.9 5.7E-25 1.2E-29 221.9 14.4 142 22-196 86-227 (510)
176 PRK14244 phosphate ABC transpo 99.9 1E-24 2.3E-29 200.6 14.8 149 21-194 85-233 (251)
177 PRK14270 phosphate ABC transpo 99.9 1.2E-24 2.6E-29 200.2 15.2 145 21-195 84-232 (251)
178 PRK14269 phosphate ABC transpo 99.9 8.7E-25 1.9E-29 200.5 14.2 149 21-194 78-226 (246)
179 PRK10261 glutathione transport 99.9 5.4E-25 1.2E-29 226.7 14.2 147 22-195 104-255 (623)
180 PRK14235 phosphate transporter 99.9 1.2E-24 2.5E-29 202.0 14.7 149 21-194 99-247 (267)
181 PRK11701 phnK phosphonate C-P 99.9 1.3E-24 2.8E-29 200.8 14.9 148 21-195 88-238 (258)
182 PRK14274 phosphate ABC transpo 99.9 1.3E-24 2.8E-29 200.9 14.6 145 21-195 92-240 (259)
183 PRK14241 phosphate transporter 99.9 1.3E-24 2.9E-29 200.7 14.7 145 21-194 84-238 (258)
184 PRK13642 cbiO cobalt transport 99.9 1.2E-24 2.5E-29 203.1 14.3 145 21-194 80-225 (277)
185 PRK15134 microcin C ABC transp 99.9 8.7E-25 1.9E-29 221.7 14.6 149 21-195 361-512 (529)
186 PRK10744 pstB phosphate transp 99.9 1.2E-24 2.6E-29 201.3 14.2 145 21-195 93-241 (260)
187 PRK13547 hmuV hemin importer A 99.9 9.3E-25 2E-29 203.0 13.5 151 21-195 82-241 (272)
188 PRK14258 phosphate ABC transpo 99.9 1.6E-24 3.5E-29 200.5 15.0 151 21-195 87-242 (261)
189 PRK09700 D-allose transporter 99.9 1.2E-24 2.5E-29 219.8 15.0 153 22-196 80-232 (510)
190 TIGR01257 rim_protein retinal- 99.9 6.5E-25 1.4E-29 244.2 14.3 146 21-195 2011-2156(2272)
191 COG4525 TauB ABC-type taurine 99.9 1.2E-24 2.5E-29 185.5 12.5 144 23-194 75-220 (259)
192 TIGR03269 met_CoM_red_A2 methy 99.9 1.2E-24 2.7E-29 220.1 15.0 145 21-194 364-513 (520)
193 COG1123 ATPase components of v 99.9 1.3E-24 2.9E-29 213.4 14.6 150 21-196 366-517 (539)
194 PRK11174 cysteine/glutathione 99.9 9.6E-25 2.1E-29 224.2 13.9 142 20-195 421-569 (588)
195 PRK14272 phosphate ABC transpo 99.9 2.3E-24 5.1E-29 198.3 14.8 146 21-195 84-233 (252)
196 PRK14240 phosphate transporter 99.9 2.9E-24 6.2E-29 197.5 15.3 144 21-194 83-230 (250)
197 PRK14246 phosphate ABC transpo 99.9 3.3E-24 7.1E-29 197.9 15.7 145 21-194 89-237 (257)
198 TIGR02982 heterocyst_DevA ABC 99.9 2.2E-24 4.8E-29 194.6 14.2 139 21-187 81-219 (220)
199 PRK14275 phosphate ABC transpo 99.9 3E-24 6.5E-29 201.1 15.6 144 21-194 119-266 (286)
200 PRK14253 phosphate ABC transpo 99.9 2.2E-24 4.9E-29 198.1 14.4 148 21-194 82-229 (249)
201 PRK10419 nikE nickel transport 99.9 3.8E-24 8.2E-29 198.7 16.0 149 21-196 88-239 (268)
202 PRK10982 galactose/methyl gala 99.9 2.1E-24 4.5E-29 217.0 15.2 150 21-196 72-221 (491)
203 PRK14249 phosphate ABC transpo 99.9 3.4E-24 7.4E-29 197.2 15.3 148 21-194 84-231 (251)
204 PRK14248 phosphate ABC transpo 99.9 2.4E-24 5.1E-29 200.1 14.3 144 21-194 101-248 (268)
205 TIGR02633 xylG D-xylose ABC tr 99.9 2.7E-24 5.9E-29 216.7 15.5 150 21-195 77-227 (500)
206 PRK14237 phosphate transporter 99.9 4E-24 8.7E-29 198.4 14.9 149 21-195 100-248 (267)
207 PRK14262 phosphate ABC transpo 99.9 3.8E-24 8.3E-29 196.7 14.6 149 21-195 83-231 (250)
208 PRK14251 phosphate ABC transpo 99.9 3.3E-24 7.1E-29 197.3 14.1 144 21-194 84-231 (251)
209 TIGR01257 rim_protein retinal- 99.9 1.9E-24 4.1E-29 240.5 14.8 144 21-194 1002-1145(2272)
210 KOG0055 Multidrug/pheromone ex 99.9 6.9E-24 1.5E-28 222.6 18.2 152 20-198 425-576 (1228)
211 PRK14236 phosphate transporter 99.9 4E-24 8.6E-29 199.0 14.7 148 21-194 105-252 (272)
212 PRK14259 phosphate ABC transpo 99.9 3E-24 6.4E-29 199.5 13.7 142 21-194 93-249 (269)
213 PRK15134 microcin C ABC transp 99.9 3.5E-24 7.6E-29 217.2 15.2 147 22-195 92-243 (529)
214 PRK14255 phosphate ABC transpo 99.9 6.2E-24 1.3E-28 195.5 15.2 144 21-194 85-232 (252)
215 TIGR02323 CP_lyasePhnK phospho 99.9 4.8E-24 1E-28 196.4 14.5 146 22-194 86-234 (253)
216 PRK09700 D-allose transporter 99.9 3.9E-24 8.6E-29 216.0 15.0 153 21-194 337-494 (510)
217 cd03245 ABCC_bacteriocin_expor 99.9 3E-24 6.5E-29 193.6 12.6 138 21-191 77-220 (220)
218 PRK11288 araG L-arabinose tran 99.9 4.4E-24 9.6E-29 215.1 15.1 147 21-193 78-224 (501)
219 PRK14260 phosphate ABC transpo 99.9 5.2E-24 1.1E-28 196.8 14.3 145 21-195 87-240 (259)
220 PRK14261 phosphate ABC transpo 99.9 5E-24 1.1E-28 196.3 14.0 148 21-194 86-233 (253)
221 PRK14266 phosphate ABC transpo 99.9 7.3E-24 1.6E-28 194.8 14.8 148 21-194 83-230 (250)
222 PRK14271 phosphate ABC transpo 99.9 8.6E-24 1.9E-28 197.1 15.2 149 21-195 100-248 (276)
223 PRK13549 xylose transporter AT 99.9 5.7E-24 1.2E-28 214.5 15.0 151 21-195 337-491 (506)
224 TIGR03608 L_ocin_972_ABC putat 99.9 7E-24 1.5E-28 189.3 13.7 132 21-182 75-206 (206)
225 COG4988 CydD ABC-type transpor 99.9 4.3E-24 9.4E-29 209.2 13.4 145 19-197 392-542 (559)
226 cd03252 ABCC_Hemolysin The ABC 99.9 5.2E-24 1.1E-28 194.3 13.1 145 21-194 75-221 (237)
227 cd03213 ABCG_EPDR ABCG transpo 99.9 1E-23 2.2E-28 186.6 14.1 115 20-191 80-194 (194)
228 cd03232 ABC_PDR_domain2 The pl 99.9 9.3E-24 2E-28 186.5 13.7 114 21-191 78-192 (192)
229 PRK14263 phosphate ABC transpo 99.9 8.3E-24 1.8E-28 195.6 14.0 146 21-194 88-241 (261)
230 PRK10762 D-ribose transporter 99.9 9.3E-24 2E-28 212.8 15.1 152 21-195 326-481 (501)
231 PRK11288 araG L-arabinose tran 99.9 8.3E-24 1.8E-28 213.1 14.7 153 21-196 327-483 (501)
232 COG4172 ABC-type uncharacteriz 99.9 7.6E-24 1.7E-28 198.0 13.2 152 20-196 361-514 (534)
233 PRK14254 phosphate ABC transpo 99.9 9.3E-24 2E-28 197.7 13.9 142 21-194 119-265 (285)
234 PRK14238 phosphate transporter 99.9 9.6E-24 2.1E-28 196.3 13.9 144 21-194 104-251 (271)
235 PRK14243 phosphate transporter 99.9 1.3E-23 2.8E-28 194.7 14.6 144 21-196 90-246 (264)
236 PRK10790 putative multidrug tr 99.9 7.2E-24 1.6E-28 217.9 14.2 142 20-196 413-561 (592)
237 PRK09544 znuC high-affinity zi 99.9 8.6E-24 1.9E-28 194.3 13.0 139 21-195 66-206 (251)
238 COG2274 SunT ABC-type bacterio 99.9 5.8E-24 1.3E-28 218.7 13.0 150 20-196 545-694 (709)
239 PRK14265 phosphate ABC transpo 99.9 1.2E-23 2.6E-28 196.0 13.9 143 21-195 100-255 (274)
240 cd03251 ABCC_MsbA MsbA is an e 99.9 1.1E-23 2.4E-28 191.6 13.1 145 21-194 75-221 (234)
241 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.9E-23 4.2E-28 188.9 14.5 132 31-191 93-224 (224)
242 CHL00131 ycf16 sulfate ABC tra 99.9 2.8E-23 6.2E-28 191.1 15.7 151 23-194 85-237 (252)
243 PRK15439 autoinducer 2 ABC tra 99.9 1.5E-23 3.3E-28 211.5 15.1 149 22-196 338-490 (510)
244 cd03237 ABC_RNaseL_inhibitor_d 99.9 2E-23 4.3E-28 191.3 14.0 133 23-187 62-194 (246)
245 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 9.5E-24 2.1E-28 220.4 13.5 139 20-195 525-670 (686)
246 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.3E-23 2.9E-28 195.2 12.6 143 21-197 76-224 (275)
247 PRK10247 putative ABC transpor 99.9 1.6E-23 3.5E-28 189.6 12.8 141 21-193 80-222 (225)
248 TIGR02633 xylG D-xylose ABC tr 99.9 1.8E-23 3.9E-28 210.7 14.5 150 21-194 335-488 (500)
249 COG4172 ABC-type uncharacteriz 99.9 2E-23 4.3E-28 195.3 13.4 148 23-194 94-243 (534)
250 PRK14252 phosphate ABC transpo 99.9 2.7E-23 5.9E-28 192.7 14.3 145 21-195 98-246 (265)
251 cd03254 ABCC_Glucan_exporter_l 99.9 8.9E-24 1.9E-28 191.7 10.7 144 21-193 76-221 (229)
252 PRK11176 lipid transporter ATP 99.9 1.4E-23 3.1E-28 215.3 13.5 143 20-195 415-564 (582)
253 cd03231 ABC_CcmA_heme_exporter 99.9 3.1E-23 6.7E-28 184.5 13.4 127 21-182 72-198 (201)
254 KOG0059 Lipid exporter ABCA1 a 99.9 8.8E-24 1.9E-28 224.6 11.7 148 20-196 638-785 (885)
255 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 3.9E-23 8.5E-28 188.6 13.8 145 21-194 76-222 (238)
256 PRK15056 manganese/iron transp 99.9 4.5E-23 9.7E-28 191.9 13.9 149 22-196 78-228 (272)
257 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.1E-23 4.6E-28 218.6 13.0 140 20-195 551-697 (710)
258 PRK09580 sufC cysteine desulfu 99.9 6.5E-23 1.4E-27 188.2 14.6 152 22-194 78-231 (248)
259 PRK11160 cysteine/glutathione 99.9 2.6E-23 5.7E-28 212.7 13.3 141 20-194 412-558 (574)
260 COG4559 ABC-type hemin transpo 99.9 3.2E-23 6.9E-28 179.0 11.2 156 21-203 74-235 (259)
261 PRK10535 macrolide transporter 99.9 3.9E-22 8.4E-27 206.3 21.5 145 21-195 85-229 (648)
262 TIGR03375 type_I_sec_LssB type 99.9 2.8E-23 6.1E-28 217.1 13.2 141 20-194 537-684 (694)
263 COG1132 MdlB ABC-type multidru 99.9 2.8E-23 6.2E-28 212.4 12.9 151 19-196 400-550 (567)
264 PRK13543 cytochrome c biogenes 99.9 6.8E-23 1.5E-27 184.1 13.8 132 21-184 81-212 (214)
265 PRK13546 teichoic acids export 99.9 9.8E-23 2.1E-27 188.5 15.1 144 23-195 86-229 (264)
266 TIGR02324 CP_lyasePhnL phospho 99.9 7.3E-23 1.6E-27 185.1 13.8 133 22-183 90-223 (224)
267 PRK10938 putative molybdenum t 99.9 2.2E-23 4.7E-28 209.6 11.3 107 82-195 115-221 (490)
268 PRK14264 phosphate ABC transpo 99.9 8.8E-23 1.9E-27 192.9 14.4 160 21-194 125-285 (305)
269 KOG0057 Mitochondrial Fe/S clu 99.9 4.8E-23 1E-27 199.4 12.7 150 20-196 423-572 (591)
270 TIGR01193 bacteriocin_ABC ABC- 99.9 2.8E-23 6E-28 217.6 12.0 142 20-195 546-694 (708)
271 cd03253 ABCC_ATM1_transporter 99.9 7.2E-23 1.6E-27 186.6 13.1 145 21-194 74-220 (236)
272 KOG0058 Peptide exporter, ABC 99.9 1.9E-23 4E-28 208.6 9.8 151 20-197 540-690 (716)
273 PRK13409 putative ATPase RIL; 99.9 6E-23 1.3E-27 209.3 13.7 138 22-193 400-537 (590)
274 PRK13538 cytochrome c biogenes 99.9 8.7E-23 1.9E-27 182.0 13.1 130 21-182 73-202 (204)
275 TIGR01842 type_I_sec_PrtD type 99.9 7.5E-23 1.6E-27 208.2 14.4 149 20-194 390-538 (544)
276 PRK13657 cyclic beta-1,2-gluca 99.9 8.6E-23 1.9E-27 209.7 14.8 142 20-195 407-555 (588)
277 TIGR02203 MsbA_lipidA lipid A 99.9 5E-23 1.1E-27 210.8 12.7 143 20-195 404-553 (571)
278 COG4987 CydC ABC-type transpor 99.9 2.3E-23 5E-28 201.4 9.6 143 20-196 410-559 (573)
279 cd03244 ABCC_MRP_domain2 Domai 99.9 8.4E-23 1.8E-27 184.3 12.3 137 21-192 77-220 (221)
280 cd03215 ABC_Carb_Monos_II This 99.9 7.8E-23 1.7E-27 179.1 11.7 106 21-187 74-182 (182)
281 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.6E-22 3.4E-27 180.8 13.4 127 21-193 81-207 (207)
282 COG4604 CeuD ABC-type enteroch 99.9 1.6E-23 3.4E-28 178.9 6.1 160 21-206 74-233 (252)
283 cd03230 ABC_DR_subfamily_A Thi 99.9 1.2E-22 2.5E-27 176.6 11.7 102 21-187 72-173 (173)
284 cd03248 ABCC_TAP TAP, the Tran 99.9 1E-22 2.2E-27 184.4 11.9 138 21-187 87-226 (226)
285 PRK13545 tagH teichoic acids e 99.9 2.1E-22 4.5E-27 198.8 14.4 140 27-195 90-229 (549)
286 TIGR01189 ccmA heme ABC export 99.9 1.9E-22 4.1E-27 179.0 12.9 126 21-181 72-197 (198)
287 TIGR01846 type_I_sec_HlyB type 99.9 1E-22 2.2E-27 212.9 12.7 142 20-195 529-677 (694)
288 PRK10789 putative multidrug tr 99.9 1.6E-22 3.4E-27 206.8 13.5 142 20-195 387-535 (569)
289 TIGR00958 3a01208 Conjugate Tr 99.9 1.3E-22 2.9E-27 212.2 12.9 140 20-195 553-699 (711)
290 PTZ00265 multidrug resistance 99.9 1.5E-22 3.2E-27 224.1 13.2 145 20-196 1294-1450(1466)
291 cd03229 ABC_Class3 This class 99.9 1.7E-22 3.7E-27 176.3 10.9 104 21-186 75-178 (178)
292 KOG0055 Multidrug/pheromone ex 99.9 1.3E-22 2.7E-27 213.2 11.7 150 20-196 1062-1211(1228)
293 COG4674 Uncharacterized ABC-ty 99.9 7.7E-23 1.7E-27 174.4 8.2 160 21-202 80-239 (249)
294 PRK13539 cytochrome c biogenes 99.9 3.3E-22 7.1E-27 178.7 12.7 130 20-184 71-200 (207)
295 COG1129 MglA ABC-type sugar tr 99.9 3.8E-22 8.2E-27 194.9 14.1 148 21-193 82-229 (500)
296 TIGR01192 chvA glucan exporter 99.9 3.7E-22 8.1E-27 204.6 14.5 149 20-195 407-555 (585)
297 PRK10982 galactose/methyl gala 99.9 4.5E-22 9.7E-27 200.1 14.7 151 21-194 322-476 (491)
298 cd03288 ABCC_SUR2 The SUR doma 99.9 2.7E-22 5.8E-27 185.2 11.8 144 21-194 94-239 (257)
299 TIGR01166 cbiO cobalt transpor 99.9 5.3E-22 1.1E-26 175.0 13.0 121 21-169 67-188 (190)
300 cd03217 ABC_FeS_Assembly ABC-t 99.9 5E-22 1.1E-26 176.6 12.3 86 107-194 104-190 (200)
301 TIGR02204 MsbA_rel ABC transpo 99.9 3.1E-22 6.7E-27 205.2 12.5 141 20-194 412-559 (576)
302 cd03246 ABCC_Protease_Secretio 99.9 3.3E-22 7.3E-27 173.7 10.8 77 108-187 97-173 (173)
303 cd03271 ABC_UvrA_II The excisi 99.9 8.5E-22 1.8E-26 180.9 12.7 134 24-193 118-261 (261)
304 PRK10938 putative molybdenum t 99.9 8.2E-22 1.8E-26 198.2 13.1 147 21-191 335-485 (490)
305 COG4619 ABC-type uncharacteriz 99.9 2.1E-22 4.5E-27 167.8 7.1 138 19-187 74-212 (223)
306 cd03247 ABCC_cytochrome_bd The 99.9 1.1E-21 2.3E-26 171.3 11.9 81 107-191 98-178 (178)
307 cd03250 ABCC_MRP_domain1 Domai 99.9 1E-21 2.2E-26 175.2 11.9 135 23-186 67-204 (204)
308 PRK11819 putative ABC transpor 99.9 1.2E-21 2.5E-26 199.8 13.8 161 21-194 69-246 (556)
309 PRK13540 cytochrome c biogenes 99.9 1.3E-21 2.7E-26 174.0 12.3 125 21-180 73-197 (200)
310 cd03290 ABCC_SUR1_N The SUR do 99.9 1.8E-21 3.8E-26 175.4 13.1 132 21-186 78-218 (218)
311 cd03214 ABC_Iron-Siderophores_ 99.9 1E-21 2.2E-26 171.7 11.3 101 85-191 80-180 (180)
312 PRK15177 Vi polysaccharide exp 99.9 1.9E-21 4.1E-26 174.5 13.2 136 27-195 54-189 (213)
313 PLN03232 ABC transporter C fam 99.9 1E-21 2.2E-26 219.0 13.2 142 20-196 1308-1456(1495)
314 PRK15064 ABC transporter ATP-b 99.9 1.5E-21 3.2E-26 198.1 12.8 136 21-193 381-520 (530)
315 PLN03130 ABC transporter C fam 99.9 1.6E-21 3.4E-26 217.9 13.4 143 20-197 1311-1460(1622)
316 cd03291 ABCC_CFTR1 The CFTR su 99.9 3.4E-21 7.3E-26 179.7 13.3 147 22-196 98-245 (282)
317 COG1101 PhnK ABC-type uncharac 99.9 1.6E-21 3.4E-26 168.9 10.2 160 11-192 67-232 (263)
318 PRK15064 ABC transporter ATP-b 99.9 2.6E-21 5.7E-26 196.3 13.6 160 22-194 64-238 (530)
319 PLN03130 ABC transporter C fam 99.9 2.4E-21 5.3E-26 216.4 14.0 146 16-196 673-826 (1622)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.3E-21 7.2E-26 196.4 13.7 160 22-194 68-244 (552)
321 COG1129 MglA ABC-type sugar tr 99.9 4.5E-21 9.7E-26 187.4 13.6 150 21-194 333-486 (500)
322 COG3845 ABC-type uncharacteriz 99.9 4.5E-21 9.8E-26 184.1 13.4 146 21-192 78-223 (501)
323 COG1119 ModF ABC-type molybden 99.9 1.3E-21 2.7E-26 173.2 8.5 152 18-192 102-256 (257)
324 PLN03232 ABC transporter C fam 99.9 4.5E-21 9.7E-26 213.8 15.0 142 20-196 677-826 (1495)
325 COG4618 ArpD ABC-type protease 99.9 3.6E-21 7.8E-26 184.9 11.8 149 21-195 409-557 (580)
326 TIGR00957 MRP_assoc_pro multi 99.9 3.2E-21 7E-26 215.2 13.2 142 20-196 1358-1506(1522)
327 PTZ00265 multidrug resistance 99.8 3.1E-21 6.8E-26 213.6 12.6 101 82-185 548-655 (1466)
328 PTZ00243 ABC transporter; Prov 99.8 3.7E-21 8.1E-26 214.5 13.3 142 20-196 1382-1531(1560)
329 TIGR02857 CydD thiol reductant 99.8 4.3E-21 9.4E-26 194.8 12.2 129 20-182 394-529 (529)
330 PRK11819 putative ABC transpor 99.8 9E-21 1.9E-25 193.3 14.3 132 23-188 388-522 (556)
331 cd03236 ABC_RNaseL_inhibitor_d 99.8 7.9E-21 1.7E-25 174.9 12.4 134 23-192 88-221 (255)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1E-20 2.2E-25 192.8 14.4 133 23-189 386-521 (552)
333 TIGR01271 CFTR_protein cystic 99.8 6.4E-21 1.4E-25 212.3 13.8 143 20-197 1290-1439(1490)
334 cd03228 ABCC_MRP_Like The MRP 99.8 7.7E-21 1.7E-25 164.8 10.9 75 108-186 97-171 (171)
335 COG4586 ABC-type uncharacteriz 99.8 4.9E-21 1.1E-25 171.2 9.7 108 81-194 135-242 (325)
336 COG4608 AppF ABC-type oligopep 99.8 7.2E-21 1.6E-25 171.7 10.5 109 82-196 88-197 (268)
337 PRK13541 cytochrome c biogenes 99.8 1.2E-20 2.6E-25 167.0 11.7 123 22-179 70-192 (195)
338 TIGR02868 CydC thiol reductant 99.8 8E-21 1.7E-25 192.8 11.2 116 21-168 407-529 (529)
339 cd03223 ABCD_peroxisomal_ALDP 99.8 2.3E-20 5E-25 161.0 12.1 73 107-185 91-163 (166)
340 cd03270 ABC_UvrA_I The excisio 99.8 3.1E-20 6.7E-25 168.2 12.5 100 84-191 118-226 (226)
341 PRK10522 multidrug transporter 99.8 2.1E-20 4.6E-25 190.3 12.6 136 20-190 395-530 (547)
342 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.8E-20 4E-25 191.0 12.2 136 20-190 414-551 (555)
343 TIGR01271 CFTR_protein cystic 99.8 2.9E-20 6.2E-25 207.2 13.5 148 20-195 485-633 (1490)
344 TIGR00954 3a01203 Peroxysomal 99.8 5.5E-20 1.2E-24 190.6 13.9 136 21-184 514-653 (659)
345 PRK11147 ABC transporter ATPas 99.8 7.8E-20 1.7E-24 189.0 14.1 134 23-190 383-519 (635)
346 cd03216 ABC_Carb_Monos_I This 99.8 4.5E-20 9.8E-25 158.7 10.3 81 107-189 82-162 (163)
347 KOG0054 Multidrug resistance-a 99.8 2.7E-20 5.9E-25 199.7 10.7 154 16-197 576-730 (1381)
348 PRK10636 putative ABC transpor 99.8 7.1E-20 1.5E-24 189.1 13.4 135 22-194 375-513 (638)
349 TIGR00957 MRP_assoc_pro multi 99.8 9.3E-20 2E-24 203.6 13.8 150 20-196 697-848 (1522)
350 cd03238 ABC_UvrA The excision 99.8 1.9E-19 4.1E-24 156.2 12.4 97 84-188 68-167 (176)
351 PRK13409 putative ATPase RIL; 99.8 1E-19 2.2E-24 185.7 12.5 96 82-185 192-287 (590)
352 PTZ00243 ABC transporter; Prov 99.8 3.6E-19 7.8E-24 198.7 15.6 151 16-196 715-868 (1560)
353 PLN03073 ABC transporter F fam 99.8 4.7E-19 1E-23 184.1 14.3 101 82-192 606-708 (718)
354 COG0396 sufC Cysteine desulfur 99.8 1.5E-18 3.2E-23 152.1 13.9 149 20-194 79-230 (251)
355 COG5265 ATM1 ABC-type transpor 99.8 2E-19 4.3E-24 169.5 8.4 149 20-195 335-483 (497)
356 cd03222 ABC_RNaseL_inhibitor T 99.8 5.5E-19 1.2E-23 153.5 9.9 86 108-194 72-159 (177)
357 COG4136 ABC-type uncharacteriz 99.8 2.4E-19 5.2E-24 147.0 6.6 130 12-169 67-196 (213)
358 KOG0056 Heavy metal exporter H 99.8 3E-19 6.5E-24 170.5 6.7 150 20-196 610-759 (790)
359 PRK10636 putative ABC transpor 99.8 2E-18 4.3E-23 178.4 11.3 102 82-193 128-231 (638)
360 COG4107 PhnK ABC-type phosphon 99.8 9.2E-18 2E-22 141.0 12.5 109 83-196 131-239 (258)
361 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.8E-18 6E-23 144.5 9.0 76 106-186 69-144 (144)
362 PRK11147 ABC transporter ATPas 99.7 4.4E-18 9.6E-23 176.0 11.5 100 82-193 138-238 (635)
363 COG0488 Uup ATPase components 99.7 1.8E-17 3.8E-22 165.8 15.2 154 23-192 67-234 (530)
364 PRK00349 uvrA excinuclease ABC 99.7 1.1E-17 2.3E-22 177.0 13.0 102 86-195 472-582 (943)
365 TIGR00630 uvra excinuclease AB 99.7 1.6E-17 3.5E-22 175.3 13.7 102 85-194 469-579 (924)
366 COG4133 CcmA ABC-type transpor 99.7 1.3E-17 2.8E-22 141.9 9.9 118 22-170 75-192 (209)
367 PLN03073 ABC transporter F fam 99.7 1.1E-17 2.4E-22 174.0 11.5 104 81-194 322-427 (718)
368 PRK00349 uvrA excinuclease ABC 99.7 2.6E-17 5.6E-22 174.1 13.6 105 83-195 810-924 (943)
369 COG4167 SapF ABC-type antimicr 99.7 7.9E-17 1.7E-21 136.4 12.9 148 22-196 87-237 (267)
370 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.3E-17 5E-22 140.9 9.4 77 108-186 81-157 (157)
371 cd03278 ABC_SMC_barmotin Barmo 99.7 4E-17 8.7E-22 144.6 10.8 90 83-184 97-190 (197)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.7 4.1E-17 8.8E-22 149.3 11.0 134 20-183 96-234 (243)
373 TIGR00630 uvra excinuclease AB 99.7 7.3E-17 1.6E-21 170.4 14.1 104 83-194 808-921 (924)
374 COG3845 ABC-type uncharacteriz 99.7 6.4E-17 1.4E-21 155.7 11.7 152 21-194 333-488 (501)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.7 3.4E-17 7.4E-22 150.7 8.3 134 21-183 76-242 (251)
376 COG4778 PhnL ABC-type phosphon 99.7 2E-17 4.3E-22 138.4 5.8 136 21-184 92-227 (235)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.7 5.8E-18 1.3E-22 151.7 2.7 142 22-184 59-204 (212)
378 PRK00635 excinuclease ABC subu 99.7 1.5E-16 3.2E-21 175.5 13.5 103 85-195 791-903 (1809)
379 cd03240 ABC_Rad50 The catalyti 99.7 9.2E-17 2E-21 143.1 9.0 78 105-184 113-197 (204)
380 cd03279 ABC_sbcCD SbcCD and ot 99.7 2.5E-16 5.3E-21 141.4 9.5 80 105-186 121-210 (213)
381 COG1134 TagH ABC-type polysacc 99.7 1.1E-15 2.3E-20 135.8 12.1 147 20-195 86-233 (249)
382 PRK00635 excinuclease ABC subu 99.6 4.3E-16 9.4E-21 171.8 11.2 101 87-195 460-569 (1809)
383 KOG0054 Multidrug resistance-a 99.6 3.7E-16 8.1E-21 168.2 9.8 151 19-197 1211-1361(1381)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.6 5.7E-16 1.2E-20 137.3 9.0 95 82-186 92-192 (198)
385 COG0488 Uup ATPase components 99.6 5.1E-15 1.1E-19 148.2 12.5 128 22-188 385-514 (530)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.6 3.8E-15 8.3E-20 136.7 10.7 77 105-184 153-233 (247)
387 COG4138 BtuD ABC-type cobalami 99.6 4.8E-16 1E-20 130.8 1.2 142 22-197 72-220 (248)
388 COG4170 SapD ABC-type antimicr 99.5 7.1E-15 1.5E-19 127.2 6.8 124 82-208 135-261 (330)
389 cd03277 ABC_SMC5_euk Eukaryoti 99.5 1.5E-14 3.3E-19 129.6 7.6 82 104-186 123-211 (213)
390 PF00005 ABC_tran: ABC transpo 99.5 2.8E-14 6E-19 118.7 7.0 81 20-136 57-137 (137)
391 COG1245 Predicted ATPase, RNas 99.5 7.9E-14 1.7E-18 133.0 10.8 130 21-182 400-529 (591)
392 cd03239 ABC_SMC_head The struc 99.5 9.5E-14 2.1E-18 121.0 9.4 75 107-184 94-172 (178)
393 KOG0927 Predicted transporter 99.5 1.3E-13 2.7E-18 134.1 9.1 104 82-194 200-305 (614)
394 KOG0062 ATPase component of AB 99.5 2.2E-13 4.9E-18 131.6 9.9 97 83-189 462-559 (582)
395 COG4178 ABC-type uncharacteriz 99.4 4.3E-13 9.4E-18 134.2 11.2 132 21-183 455-587 (604)
396 cd03241 ABC_RecN RecN ATPase i 99.4 3.6E-13 7.8E-18 125.6 8.3 76 107-186 170-249 (276)
397 cd03227 ABC_Class2 ABC-type Cl 99.4 7.5E-13 1.6E-17 113.7 8.8 75 107-184 77-155 (162)
398 COG1245 Predicted ATPase, RNas 99.4 8.6E-13 1.9E-17 126.0 9.0 95 82-183 193-287 (591)
399 TIGR00634 recN DNA repair prot 99.4 7.9E-13 1.7E-17 135.0 8.8 77 106-186 439-519 (563)
400 cd03280 ABC_MutS2 MutS2 homolo 99.4 1.2E-12 2.6E-17 116.3 8.2 82 106-191 90-172 (200)
401 COG0178 UvrA Excinuclease ATPa 99.4 5E-12 1.1E-16 128.2 12.8 106 84-196 803-917 (935)
402 PRK10869 recombination and rep 99.3 2.3E-12 5.1E-17 130.7 9.4 77 106-186 429-509 (553)
403 TIGR00618 sbcc exonuclease Sbc 99.3 3.3E-12 7.2E-17 139.3 9.8 80 104-185 947-1036(1042)
404 PHA02562 46 endonuclease subun 99.3 3.3E-12 7.1E-17 130.8 8.3 78 105-187 466-555 (562)
405 KOG0927 Predicted transporter 99.3 4E-12 8.8E-17 123.7 7.8 101 82-192 488-590 (614)
406 KOG0062 ATPase component of AB 99.3 6.1E-12 1.3E-16 121.8 6.4 97 86-192 181-279 (582)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.3 9.3E-12 2E-16 112.3 6.6 98 83-192 73-175 (222)
408 KOG0066 eIF2-interacting prote 99.2 5.3E-11 1.2E-15 113.2 8.8 78 83-168 684-761 (807)
409 PRK03918 chromosome segregatio 99.2 4.4E-11 9.5E-16 128.8 9.2 78 104-184 785-868 (880)
410 cd03242 ABC_RecF RecF is a rec 99.2 5.1E-11 1.1E-15 110.8 7.4 76 106-187 182-269 (270)
411 KOG2355 Predicted ABC-type tra 99.1 8.7E-11 1.9E-15 101.7 7.3 105 82-194 129-233 (291)
412 PRK01156 chromosome segregatio 99.1 1.2E-10 2.7E-15 125.4 10.1 78 104-183 798-883 (895)
413 COG4615 PvdE ABC-type sideroph 99.1 1.2E-10 2.5E-15 109.8 8.4 110 82-193 423-532 (546)
414 PRK10246 exonuclease subunit S 99.1 1.2E-10 2.7E-15 126.6 9.4 78 104-183 946-1031(1047)
415 TIGR00606 rad50 rad50. This fa 99.0 4.1E-10 8.9E-15 125.4 8.6 70 106-176 1198-1277(1311)
416 TIGR02168 SMC_prok_B chromosom 99.0 4.1E-10 8.8E-15 124.5 8.1 76 104-183 1086-1165(1179)
417 COG0178 UvrA Excinuclease ATPa 99.0 1.8E-09 4E-14 109.9 11.1 89 105-196 479-575 (935)
418 KOG0066 eIF2-interacting prote 99.0 1.7E-10 3.7E-15 109.9 2.8 100 81-190 390-490 (807)
419 KOG0060 Long-chain acyl-CoA tr 99.0 2.6E-09 5.7E-14 105.1 10.7 135 22-184 501-641 (659)
420 PRK00064 recF recombination pr 99.0 1.2E-09 2.6E-14 105.7 8.2 79 104-187 270-359 (361)
421 TIGR02169 SMC_prok_A chromosom 99.0 1.1E-09 2.4E-14 121.2 8.0 77 104-184 1071-1151(1164)
422 cd03243 ABC_MutS_homologs The 98.9 4.4E-09 9.5E-14 93.6 8.6 84 106-193 90-174 (202)
423 PRK02224 chromosome segregatio 98.9 3E-09 6.6E-14 114.6 8.7 78 105-184 779-868 (880)
424 smart00534 MUTSac ATPase domai 98.9 1.9E-09 4.1E-14 94.6 4.8 94 86-187 45-139 (185)
425 KOG0064 Peroxisomal long-chain 98.8 5.9E-09 1.3E-13 101.6 4.3 133 22-182 545-681 (728)
426 PRK14079 recF recombination pr 98.8 1.8E-08 3.9E-13 97.1 7.6 74 107-189 263-345 (349)
427 COG2401 ABC-type ATPase fused 98.7 2.1E-08 4.5E-13 95.4 7.6 102 83-188 486-588 (593)
428 cd03283 ABC_MutS-like MutS-lik 98.7 3.7E-08 8E-13 87.4 7.9 45 124-169 104-149 (199)
429 TIGR00611 recf recF protein. A 98.7 2.4E-08 5.2E-13 96.7 6.7 60 106-169 274-342 (365)
430 KOG0063 RNAse L inhibitor, ABC 98.7 4.2E-08 9.1E-13 93.6 6.8 131 20-182 400-530 (592)
431 PF02463 SMC_N: RecF/RecN/SMC 98.6 1.1E-07 2.4E-12 85.5 8.6 72 107-182 136-211 (220)
432 COG0419 SbcC ATPase involved i 98.5 2.7E-07 5.9E-12 99.7 9.1 78 104-184 812-897 (908)
433 TIGR02680 conserved hypothetic 98.5 2E-07 4.4E-12 103.9 7.5 59 105-167 1245-1315(1353)
434 cd03282 ABC_MSH4_euk MutS4 hom 98.5 2.4E-07 5.1E-12 82.5 6.0 79 83-168 72-151 (204)
435 KOG0063 RNAse L inhibitor, ABC 98.5 3.4E-07 7.5E-12 87.5 7.1 95 82-183 193-287 (592)
436 cd03284 ABC_MutS1 MutS1 homolo 98.4 3.8E-07 8.1E-12 82.0 6.7 84 107-194 85-177 (216)
437 PF13304 AAA_21: AAA domain; P 98.4 1.1E-06 2.3E-11 79.4 8.2 64 105-169 234-300 (303)
438 PRK00409 recombination and DNA 98.4 5.9E-07 1.3E-11 94.9 7.1 82 105-190 388-470 (782)
439 PF13558 SbcCD_C: Putative exo 98.3 1.2E-06 2.6E-11 67.4 6.3 47 106-152 31-90 (90)
440 cd01124 KaiC KaiC is a circadi 98.3 1.2E-06 2.5E-11 76.5 7.1 77 106-183 70-163 (187)
441 PTZ00132 GTP-binding nuclear p 98.2 1.4E-06 3.1E-11 78.0 5.1 45 111-155 156-205 (215)
442 cd03281 ABC_MSH5_euk MutS5 hom 98.2 3.1E-06 6.7E-11 75.9 7.2 62 107-168 88-154 (213)
443 PRK13695 putative NTPase; Prov 98.1 1.3E-05 2.8E-10 69.4 8.1 77 107-190 78-156 (174)
444 TIGR01069 mutS2 MutS2 family p 98.1 5.6E-06 1.2E-10 87.4 6.8 63 105-169 383-446 (771)
445 PRK13830 conjugal transfer pro 97.8 3.6E-05 7.8E-10 82.2 5.9 70 122-193 649-728 (818)
446 TIGR02858 spore_III_AA stage I 97.7 0.0001 2.2E-09 68.3 7.3 67 118-194 187-265 (270)
447 PF01061 ABC2_membrane: ABC-2 97.6 9.7E-05 2.1E-09 65.0 5.1 84 276-362 1-86 (210)
448 cd01128 rho_factor Transcripti 97.6 4.5E-05 9.7E-10 69.9 3.0 76 105-187 127-211 (249)
449 cd03286 ABC_MSH6_euk MutS6 hom 97.5 0.00024 5.3E-09 63.8 6.9 62 107-168 89-153 (218)
450 PRK08533 flagellar accessory p 97.4 0.00026 5.6E-09 64.3 6.2 75 108-183 96-184 (230)
451 cd01125 repA Hexameric Replica 97.4 0.00019 4.1E-09 65.5 4.9 47 121-168 107-159 (239)
452 cd03287 ABC_MSH3_euk MutS3 hom 97.4 0.00061 1.3E-08 61.4 8.1 68 107-176 90-160 (222)
453 PF13175 AAA_15: AAA ATPase do 97.4 0.00043 9.4E-09 67.9 7.4 66 104-169 338-413 (415)
454 COG3910 Predicted ATPase [Gene 97.4 0.00061 1.3E-08 58.9 7.1 63 105-169 127-189 (233)
455 PRK06067 flagellar accessory p 97.2 0.0014 3.1E-08 59.4 8.2 75 108-183 101-186 (234)
456 cd01120 RecA-like_NTPases RecA 97.2 0.0012 2.7E-08 55.3 7.1 63 108-171 68-140 (165)
457 KOG0964 Structural maintenance 97.1 0.00034 7.3E-09 72.8 3.7 73 106-182 1096-1172(1200)
458 PRK13891 conjugal transfer pro 97.0 0.00099 2.1E-08 71.7 6.3 69 118-188 680-751 (852)
459 COG4637 Predicted ATPase [Gene 97.0 0.0023 4.9E-08 59.6 7.2 62 105-168 268-331 (373)
460 COG0497 RecN ATPase involved i 97.0 0.0028 6.1E-08 63.7 8.3 76 105-184 429-508 (557)
461 TIGR03185 DNA_S_dndD DNA sulfu 96.9 0.002 4.4E-08 67.3 6.8 48 105-153 549-603 (650)
462 COG1196 Smc Chromosome segrega 96.8 0.0021 4.5E-08 71.6 6.8 73 105-181 1064-1140(1163)
463 PF13166 AAA_13: AAA domain 96.1 0.021 4.5E-07 60.5 8.8 63 104-167 497-570 (712)
464 PRK13873 conjugal transfer ATP 96.0 0.013 2.8E-07 63.0 6.8 47 122-169 632-679 (811)
465 PRK07721 fliI flagellum-specif 96.0 0.019 4.2E-07 56.9 7.5 85 107-194 223-339 (438)
466 TIGR02788 VirB11 P-type DNA tr 95.9 0.015 3.3E-07 55.1 5.8 70 115-194 208-277 (308)
467 KOG0933 Structural maintenance 95.8 0.0066 1.4E-07 63.8 3.0 72 105-180 1080-1155(1174)
468 TIGR02655 circ_KaiC circadian 95.7 0.0012 2.6E-08 66.6 -2.6 80 88-183 101-190 (484)
469 PRK05399 DNA mismatch repair p 95.6 0.046 9.9E-07 59.0 8.6 71 104-178 663-738 (854)
470 PF09818 ABC_ATPase: Predicted 95.4 0.054 1.2E-06 53.0 7.7 80 106-186 321-415 (448)
471 TIGR00152 dephospho-CoA kinase 95.0 0.013 2.8E-07 51.2 1.9 73 110-185 60-133 (188)
472 PRK13898 type IV secretion sys 94.9 0.065 1.4E-06 57.6 7.3 48 121-169 638-686 (800)
473 KOG0996 Structural maintenance 94.9 0.022 4.8E-07 61.0 3.5 75 105-183 1193-1271(1293)
474 COG1195 RecF Recombinational D 94.8 0.056 1.2E-06 51.9 5.6 75 107-187 275-361 (363)
475 PRK06793 fliI flagellum-specif 94.7 0.043 9.2E-07 54.2 4.8 81 105-193 219-306 (432)
476 cd01131 PilT Pilus retraction 94.7 0.082 1.8E-06 46.7 6.2 57 117-183 66-122 (198)
477 KOG0962 DNA repair protein RAD 93.7 0.1 2.2E-06 57.2 5.4 45 108-152 1184-1234(1294)
478 PRK14088 dnaA chromosomal repl 93.5 0.16 3.4E-06 50.7 6.1 70 124-194 193-264 (440)
479 cd00561 CobA_CobO_BtuR ATP:cor 92.9 0.27 5.8E-06 41.9 5.9 68 115-184 83-154 (159)
480 PRK08699 DNA polymerase III su 92.8 0.13 2.8E-06 49.1 4.3 42 129-173 116-157 (325)
481 KOG0018 Structural maintenance 92.6 0.16 3.5E-06 54.3 4.8 73 105-183 1049-1125(1141)
482 TIGR01420 pilT_fam pilus retra 92.3 0.26 5.6E-06 47.5 5.6 57 117-183 187-243 (343)
483 PF00488 MutS_V: MutS domain V 91.4 0.99 2.1E-05 41.0 8.1 71 105-177 100-173 (235)
484 smart00382 AAA ATPases associa 91.2 2.8 6.1E-05 33.1 10.0 60 107-166 60-124 (148)
485 COG4694 Uncharacterized protei 90.8 0.91 2E-05 45.6 7.6 69 107-177 529-605 (758)
486 PF13514 AAA_27: AAA domain 90.2 0.8 1.7E-05 51.1 7.6 71 105-179 1023-1101(1111)
487 PRK07414 cob(I)yrinic acid a,c 90.1 0.73 1.6E-05 39.9 5.6 69 116-186 104-176 (178)
488 PRK04296 thymidine kinase; Pro 88.9 1 2.2E-05 39.5 5.8 63 124-192 77-148 (190)
489 COG3044 Predicted ATPase of th 88.5 1.8 3.8E-05 42.3 7.4 79 108-188 321-412 (554)
490 cd01122 GP4d_helicase GP4d_hel 87.5 1 2.2E-05 41.5 5.2 54 114-167 127-190 (271)
491 TIGR03880 KaiC_arch_3 KaiC dom 87.2 1 2.2E-05 40.4 4.8 59 124-183 106-177 (224)
492 PRK04863 mukB cell division pr 87.0 0.5 1.1E-05 53.8 3.2 56 105-165 1363-1435(1486)
493 PRK13764 ATPase; Provisional 86.7 2.1 4.6E-05 44.2 7.4 67 120-194 319-401 (602)
494 PRK05986 cob(I)alamin adenolsy 86.7 1.3 2.8E-05 38.9 5.0 68 115-184 103-174 (191)
495 TIGR01070 mutS1 DNA mismatch r 86.6 2.2 4.7E-05 46.2 7.6 72 104-177 648-722 (840)
496 TIGR03881 KaiC_arch_4 KaiC dom 85.8 1.2 2.5E-05 40.0 4.5 59 125-183 121-188 (229)
497 COG4913 Uncharacterized protei 85.5 2.6 5.6E-05 43.8 7.1 64 106-175 989-1065(1104)
498 cd00009 AAA The AAA+ (ATPases 85.0 3.8 8.3E-05 32.7 6.9 54 114-168 73-130 (151)
499 TIGR00416 sms DNA repair prote 84.9 1.5 3.3E-05 43.9 5.2 63 124-186 169-247 (454)
500 TIGR00708 cobA cob(I)alamin ad 84.5 2.5 5.3E-05 36.5 5.6 69 114-184 84-156 (173)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.5e-55 Score=481.12 Aligned_cols=345 Identities=54% Similarity=0.959 Sum_probs=282.8
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcc------------hhhhHHHH
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDID------------TYMKTDYN 86 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~ 86 (363)
.+++.++||+|++.+++.+||+|||.|++.+++.+.+.+...+....++..+..|+.+.+ ....++.+
T Consensus 236 ~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (1470)
T PLN03140 236 VPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYT 315 (1470)
T ss_pred cccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHH
Confidence 346789999999999999999999999988765432221111222222222222221111 01136789
Q ss_pred HHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 87 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 87 l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
++.+||++++||.+|+..+++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..|+|+|+++|
T Consensus 316 L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~H 395 (1470)
T PLN03140 316 LKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLL 395 (1470)
T ss_pred HHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766899999999
Q ss_pred CCChHHHhhhcceeeecCCeEEEecCCC-----------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHH
Q 044411 167 QPSPETFDLFDDIILMAEGKILYHGPRK-----------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFH 235 (363)
Q Consensus 167 ~~~~~~~~~~D~v~vL~~G~iv~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (363)
||.++++++||+|++|++|+++|+|+++ .||++.+++||++++++..++.++|.....|....++++++
T Consensus 396 qp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~ 475 (1470)
T PLN03140 396 QPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFA 475 (1470)
T ss_pred CCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHH
Confidence 9988999999999999999999999976 79999999999999998766555554333343446789999
Q ss_pred HHHhcChhhhhHHHHHHhhhhcccccccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhh
Q 044411 236 KKFKESPFGKKLEEDLSELYDKSESKKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFL 315 (363)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~ 315 (363)
++|+++..++++.++++.+.++...++.......|..++|.|++.|++|++++++||+.++..|+++.+++|+++|++||
T Consensus 476 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~ 555 (1470)
T PLN03140 476 ERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFL 555 (1470)
T ss_pred HHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988887777766555443333333445678999999999999999999999999999999999999999999999
Q ss_pred ccCCCcch-hhHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHhHhhccC
Q 044411 316 RTGMEVDV-FHANYFMGSLFYALVILIVDGISEIPMTLERLAVFYKQKE 363 (363)
Q Consensus 316 ~~~~~~~~-~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~r~vf~~er~ 363 (363)
+++.+... .+.+.+.|++||++++.+|+++++++.++.+||||+|||+
T Consensus 556 ~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~ 604 (1470)
T PLN03140 556 RTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRD 604 (1470)
T ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhh
Confidence 87654332 2557788999999999999999999999999999999985
No 2
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.4e-55 Score=453.45 Aligned_cols=342 Identities=51% Similarity=0.851 Sum_probs=309.1
Q ss_pred ccccCccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHH
Q 044411 7 RIGFGLSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYN 86 (363)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 86 (363)
++.++..-..++.+++.++|++|+|.|+|.|||+|+|.|+++|++++.+.+ +..+.++... ..+.+
T Consensus 174 ~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~~-----------~~d~~ 239 (1391)
T KOG0065|consen 174 EITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLAA-----------MTDYL 239 (1391)
T ss_pred ceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHHH-----------HHHHH
Confidence 344444444567778999999999999999999999999999998876654 3333333221 37789
Q ss_pred HHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 87 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 87 l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
++.+||++|+||+||++..||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.|+++++..+.|++++++
T Consensus 240 lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~ 319 (1391)
T KOG0065|consen 240 LKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL 319 (1391)
T ss_pred HHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCChHHHhhhcceeeecCCeEEEecCCC-----------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHH
Q 044411 167 QPSPETFDLFDDIILMAEGKILYHGPRK-----------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFH 235 (363)
Q Consensus 167 ~~~~~~~~~~D~v~vL~~G~iv~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (363)
||+++++++||+|++|.+|+++|+||.+ .||++..++||+.++++..++.++|.....+....+++++.
T Consensus 320 Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~ 399 (1391)
T KOG0065|consen 320 QPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFA 399 (1391)
T ss_pred cCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHH
Confidence 9999999999999999999999999987 78999999999999999777777887766676777889999
Q ss_pred HHHhcChhhhhHHHHHHhhhhcccccccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhh
Q 044411 236 KKFKESPFGKKLEEDLSELYDKSESKKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFL 315 (363)
Q Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~ 315 (363)
+.|.+++.++++..+++.+.++.+.++.++...+|..+.|.|++.|+.|.|+.++||..++...+++.+++|+++|++|+
T Consensus 400 ~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~ 479 (1391)
T KOG0065|consen 400 EYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFY 479 (1391)
T ss_pred HHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhhee
Confidence 99999999999999999998888888888888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHhHhhccC
Q 044411 316 RTGMEVDVFHANYFMGSLFYALVILIVDGISEIPMTLERLAVFYKQKE 363 (363)
Q Consensus 316 ~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~r~vf~~er~ 363 (363)
+++. .+..+.+.+.|++||++++.+|.++++++..+++||||+|||+
T Consensus 480 ~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 480 RTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred eccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 8773 4444789999999999999999999999999999999999996
No 3
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-53 Score=432.05 Aligned_cols=311 Identities=31% Similarity=0.493 Sum_probs=245.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||.|+|.++|++||+|++.|++.++.... ....++. .+|+++++.+||.+|+||+
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k~------------~~V~~vi~~LgL~~~~~t~ 162 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEKR------------ERVEEVISELGLEKCADTL 162 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHHH------------HHHHHHHHHcCChhhccce
Confidence 56789999999999999999999999998874321 1222222 2699999999999999999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+...||+||||||||+||..|+++|.||+|||||+|||+.++.++++.|+++|++ |+|||+|+|||+.+++++||++
T Consensus 163 ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 163 IGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred ecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHh
Confidence 999888999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred eeecCCeEEEecCCC-----------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHHHHHhcChhhhhHH
Q 044411 180 ILMAEGKILYHGPRK-----------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFHKKFKESPFGKKLE 248 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 248 (363)
++|++|+++|.|++. +||.+.||+||++++.+.++...... +........+.+.......+..
T Consensus 242 ~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 315 (613)
T KOG0061|consen 242 LLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELE------EAVRIAKLINKFSQTDNLKKTL 315 (613)
T ss_pred hhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH------hHHHHHHHhhhccccchhhhhH
Confidence 999999999999886 78999999999999887431110000 0000001111111100000000
Q ss_pred HHHHhhhhcccccccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHH
Q 044411 249 EDLSELYDKSESKKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFLRTGMEVDVFHANY 328 (363)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~ 328 (363)
.......... .........+||.|+++|++|.+++.+|||.+++.|+++++++|+++|++||+++ .+..++++
T Consensus 316 ~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~--~~~~~~~~ 388 (613)
T KOG0061|consen 316 EALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLG--NDAKGIQN 388 (613)
T ss_pred HHHhhhcccc-----cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCC--CchHHHHH
Confidence 0001100000 0001111689999999999999999999999999999999999999999999664 55556679
Q ss_pred HHHHHHHHHHHHHHhhhh-hhHHHHHhHHhHhhccC
Q 044411 329 FMGSLFYALVILIVDGIS-EIPMTLERLAVFYKQKE 363 (363)
Q Consensus 329 ~~g~lf~~~~~~~~~~~~-~~~~~~~~r~vf~~er~ 363 (363)
+.|++||.+.++.|.++. .++.|.++|++|.||+.
T Consensus 389 ~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 389 RLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999998776655 69999999999999974
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.5e-51 Score=449.52 Aligned_cols=325 Identities=28% Similarity=0.436 Sum_probs=264.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++||+|++.++|.+||+||+.|++.++...... ......+... ..++.+++.+||++++|+.+
T Consensus 137 r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~---~~~~~~~~~~-----------~~~~~~l~~lgL~~~~~t~v 202 (1394)
T TIGR00956 137 RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRP---DGVSREEYAK-----------HIADVYMATYGLSHTRNTKV 202 (1394)
T ss_pred CceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCC---CCCCHHHHHH-----------HHHHHHHHHcCcccccCcee
Confidence 456999999999999999999999987765321100 0011111110 12466899999999999999
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
|+..+++|||||||||+||++|+.+|+|+||||||+|||+.++..+++.|++++++.|+|+|+++||+.++++++||+|+
T Consensus 203 g~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~ 282 (1394)
T TIGR00956 203 GNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI 282 (1394)
T ss_pred CCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE
Confidence 99999999999999999999999999999999999999999999999999999876689999999999889999999999
Q ss_pred eecCCeEEEecCCC-----------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHHHHHhcChhhhhHHH
Q 044411 181 LMAEGKILYHGPRK-----------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFHKKFKESPFGKKLEE 249 (363)
Q Consensus 181 vL~~G~iv~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 249 (363)
+|++|+++++|+++ .||++.+++||+.++++++.. .... +.....+.+.+++.+.|++|+.++++..
T Consensus 283 ~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~-~~e~~~~~~~~~~~~~~~~s~~~~~~~~ 360 (1394)
T TIGR00956 283 VLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKP-GYEKKVPRTPQEFETYWRNSPEYAQLMK 360 (1394)
T ss_pred EEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccc-cccccCCCCHHHHHHHHHcCHHHHHHHH
Confidence 99999999999875 689999999999999876432 1111 1111234568899999999988776666
Q ss_pred HHHhhhhcc---------------cccccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh
Q 044411 250 DLSELYDKS---------------ESKKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLF 314 (363)
Q Consensus 250 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f 314 (363)
+++...+.. ...........|..|+|+|+++|++|++++++|||.++++|+++++++|+++|++|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F 440 (1394)
T TIGR00956 361 EIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVF 440 (1394)
T ss_pred HHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 554322110 00001122346788999999999999999999999999999999999999999999
Q ss_pred hccCCCcchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHhHhhccC
Q 044411 315 LRTGMEVDVFHANYFMGSLFYALVILIVDGISEIPMTLERLAVFYKQKE 363 (363)
Q Consensus 315 ~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~r~vf~~er~ 363 (363)
|+++ .+..+++++.|++||++++.+|+++.+++.++.+|+||+|||+
T Consensus 441 ~~~~--~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~ 487 (1394)
T TIGR00956 441 YNLP--KNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRK 487 (1394)
T ss_pred cCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecc
Confidence 9655 5555789999999999999999999999999999999999985
No 5
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-51 Score=429.03 Aligned_cols=327 Identities=29% Similarity=0.374 Sum_probs=270.4
Q ss_pred CccccccccCccc-----cCcc----ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcC
Q 044411 2 SSLNDRIGFGLSV-----TGEF----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARII 72 (363)
Q Consensus 2 ~~~~~~~~~~~~~-----~~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (363)
.-|+.|+..|... .|.+ ..+|.+|||.|+|.|.|.+||+|.|.|+|.+|.... ....++
T Consensus 835 dvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~-------v~~~ek----- 902 (1391)
T KOG0065|consen 835 DVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKE-------VSDEEK----- 902 (1391)
T ss_pred HHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCc-------CCHHHH-----
Confidence 3477887776332 2222 246889999999999999999999999998874322 111222
Q ss_pred CCCCcchhhhHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCC-cEEEEeCCCCCCCHHhHHHHHHHHH
Q 044411 73 PDPDIDTYMKTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPI-KAMFMDKITNGLDISTSFQIVTCLQ 151 (363)
Q Consensus 73 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P-~lLlLDEPtsGLD~~~~~~i~~~l~ 151 (363)
.+.|+++++.++|++++|.+||... .|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|
T Consensus 903 -------~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr 974 (1391)
T KOG0065|consen 903 -------YEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLR 974 (1391)
T ss_pred -------HHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence 1259999999999999999999866 999999999999999999999 9999999999999999999999999
Q ss_pred HHhhcCCCEEEEEecCCChHHHhhhcceeeecC-CeEEEecCCC----------------CCCCCCChHHHHHHhcCcch
Q 044411 152 HLAHITDATILISLLQPSPETFDLFDDIILMAE-GKILYHGPRK----------------VCPDRKAVADFVLEVISRKD 214 (363)
Q Consensus 152 ~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~-G~iv~~G~~~----------------~~~~~~~~~~~~~~~~~~~~ 214 (363)
++++ .|.||+||+|||+..+++.||++++|++ |++||.|+.. .|+...|||+|++++++...
T Consensus 975 kla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~ 1053 (1391)
T KOG0065|consen 975 KLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGA 1053 (1391)
T ss_pred HHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccc
Confidence 9997 6999999999999999999999999975 7999999976 57778899999999987533
Q ss_pred hhhhhhcCCCCCCCCChHHHHHHHhcChhhhhHHHHHHhhhhcccc-cccccccccccCcHHHHHHHHHHHHHHHHhhch
Q 044411 215 QAQYWFHNELPHSFVPVDMFHKKFKESPFGKKLEEDLSELYDKSES-KKRSVSFAVFSLSRWEVFKACMSRELLLAKRNY 293 (363)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~ 293 (363)
... . ..++++.|++|+.+++..+++.....+.+. ........+|+.|+|.|++.++||++..+||+|
T Consensus 1054 ~~~-----------~-~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp 1121 (1391)
T KOG0065|consen 1054 EAS-----------L-SVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSP 1121 (1391)
T ss_pred ccc-----------c-CccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCc
Confidence 221 1 126899999999999888877665544333 333344567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHhhhhhhHH-HHHhHHhHhhccC
Q 044411 294 FLYLFKTIQIIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYALVILIVDGISEIPM-TLERLAVFYKQKE 363 (363)
Q Consensus 294 ~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~-~~~~r~vf~~er~ 363 (363)
.++++|++..++.||++|+.||+++ ++..+.++.+|++|.++++....-....+. ...||.+|||||+
T Consensus 1122 ~y~~ar~~~~i~~gl~iGf~F~~~g--~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~ 1190 (1391)
T KOG0065|consen 1122 DYLMARFALTIVAGLFIGFTFWKVG--HNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERA 1190 (1391)
T ss_pred HHHHHHHHHHHHHHHhheeeeeecC--CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecc
Confidence 9999999999999999999999766 555588999999999998865544444444 4579999999984
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-49 Score=407.96 Aligned_cols=315 Identities=30% Similarity=0.465 Sum_probs=251.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|++.+++.+||+|||.|++.++.... ....++ ..+++++++.+||.+++|+.
T Consensus 97 ~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~-------~~~~~~------------~~~v~~~l~~lgL~~~~~t~ 157 (617)
T TIGR00955 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR-------VTKKEK------------RERVDEVLQALGLRKCANTR 157 (617)
T ss_pred HhhhceeeccccccCccCcHHHHHHHHHhcCCCCC-------CCHHHH------------HHHHHHHHHHcCchhcCcCc
Confidence 35679999999999999999999999887653211 111111 12588999999999999999
Q ss_pred ccCC-cCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 100 VGDA-IRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 100 vg~~-~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+|+. ..++|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ .|+|||+++|||..+++++||+
T Consensus 158 vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~ 236 (617)
T TIGR00955 158 IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDK 236 (617)
T ss_pred cCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhce
Confidence 9975 3689999999999999999999999999999999999999999999999986 4899999999998899999999
Q ss_pred eeeecCCeEEEecCCC-----------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHHHHHhcChhhhhH
Q 044411 179 IILMAEGKILYHGPRK-----------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFHKKFKESPFGKKL 247 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 247 (363)
+++|++|++++.|+++ .||.+.+++||+.++.+...... .....+.+++.+.|.+++.+++.
T Consensus 237 i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~ 309 (617)
T TIGR00955 237 IILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-------NESRERIEKICDSFAVSDIGRDM 309 (617)
T ss_pred EEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-------cchHHHHHHHHHHHhcchhhHHH
Confidence 9999999999999976 58899999999999876432110 00112345566777777655544
Q ss_pred HHHHHhhhhcccc---cccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhccCCCcchh
Q 044411 248 EEDLSELYDKSES---KKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFLRTGMEVDVF 324 (363)
Q Consensus 248 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~ 324 (363)
.+.+......... .........+..++|.|+.+|++|+++..+|||.++.+|+++.+++|+++|++||+++ .+..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~--~~~~ 387 (617)
T TIGR00955 310 LVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG--LTQK 387 (617)
T ss_pred HHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC--CCHH
Confidence 4333221111100 0011122456789999999999999999999999999999999999999999999655 4555
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-hhhHHHHHhHHhHhhccC
Q 044411 325 HANYFMGSLFYALVILIVDGI-SEIPMTLERLAVFYKQKE 363 (363)
Q Consensus 325 ~~~~~~g~lf~~~~~~~~~~~-~~~~~~~~~r~vf~~er~ 363 (363)
+++++.|++|+++++++|.++ ..++.+..+|++|+|||+
T Consensus 388 ~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~ 427 (617)
T TIGR00955 388 GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETR 427 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999998888765 667888899999999984
No 7
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-48 Score=402.26 Aligned_cols=314 Identities=23% Similarity=0.357 Sum_probs=239.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|++.+++.+||+||+.|++.++.... ....+. .++++++++.+||.+++|+.+
T Consensus 139 ~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~~------------~~~v~~~l~~lgL~~~~~t~v 199 (659)
T PLN03211 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQEK------------ILVAESVISELGLTKCENTII 199 (659)
T ss_pred ccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHHH------------HHHHHHHHHHcCChhhcCcee
Confidence 4569999999999999999999999765432110 011111 124788999999999999999
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
|+...++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++|++..++.++||+++
T Consensus 200 g~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~ii 278 (659)
T PLN03211 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVL 278 (659)
T ss_pred CCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEE
Confidence 9988999999999999999999999999999999999999999999999999986 589999999999878999999999
Q ss_pred eecCCeEEEecCCC-----------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHHHHHhcChhhhhHHH
Q 044411 181 LMAEGKILYHGPRK-----------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFHKKFKESPFGKKLEE 249 (363)
Q Consensus 181 vL~~G~iv~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 249 (363)
+|++|++++.|+++ .||.+.||+||++++.+.+....... ........+.+.+.|++... .+...
T Consensus 279 lL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~-~~~~~ 354 (659)
T PLN03211 279 VLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVS---EREKPNVKQSLVASYNTLLA-PKVKA 354 (659)
T ss_pred EecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcc---ccccchHHHHHHHHHHhhcc-HHHHH
Confidence 99999999999976 68999999999999987532110000 00011112334455543211 11111
Q ss_pred HHHhh--hh-ccc-----c-cccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 044411 250 DLSEL--YD-KSE-----S-KKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFLRTGME 320 (363)
Q Consensus 250 ~~~~~--~~-~~~-----~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~ 320 (363)
..... .. ..+ . .........+..+||+|+.+|++|++++ +||+.+..+|+++++++|+++|++||+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-- 431 (659)
T PLN03211 355 AIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-- 431 (659)
T ss_pred HHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 11100 00 000 0 0000011234578999999999999998 88898889999999999999999999653
Q ss_pred cchhhHHHHHHHHHHHHHHHHH-hhhhhhHHHHHhHHhHhhccC
Q 044411 321 VDVFHANYFMGSLFYALVILIV-DGISEIPMTLERLAVFYKQKE 363 (363)
Q Consensus 321 ~~~~~~~~~~g~lf~~~~~~~~-~~~~~~~~~~~~r~vf~~er~ 363 (363)
..+++++.|++||+++++++ ++++.++.|.+||+||+|||+
T Consensus 432 --~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~ 473 (659)
T PLN03211 432 --FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERA 473 (659)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 24679999999999888765 556889999999999999984
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-48 Score=428.43 Aligned_cols=311 Identities=26% Similarity=0.403 Sum_probs=251.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|++.+++.+||+|||.|++.++.... ....++ ..+++++++.+||.+++|+.+
T Consensus 952 ~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~~~------------~~~v~~vl~~lgL~~~~~~~v 1012 (1470)
T PLN03140 952 ARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKEEK------------MMFVDEVMELVELDNLKDAIV 1012 (1470)
T ss_pred hhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHHHH------------HHHHHHHHHHCCChhHhCCcc
Confidence 4679999999999999999999999876542110 011111 124889999999999999999
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
|+..+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++||+..++++.||+++
T Consensus 1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEE
Confidence 9877789999999999999999999999999999999999999999999999987 489999999999878899999999
Q ss_pred eecC-CeEEEecCCC-----------------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHHHHHhcCh
Q 044411 181 LMAE-GKILYHGPRK-----------------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFHKKFKESP 242 (363)
Q Consensus 181 vL~~-G~iv~~G~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 242 (363)
+|++ |+++++|++. .||+..||+||++++++..... ....++++.|++|+
T Consensus 1092 lL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~ 1159 (1470)
T PLN03140 1092 LMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSS 1159 (1470)
T ss_pred EEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc------------cccchHHHHHhccH
Confidence 9996 8999999852 3788999999999987642211 11236889999988
Q ss_pred hhhhHHHHHHhhhhcccccccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 044411 243 FGKKLEEDLSELYDKSESKKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFLRTGMEVD 322 (363)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~ 322 (363)
.+++..+.+..................|..++|+|+++|++|+++.+||||.++.+|+++++++|+++|++||+++.+.+
T Consensus 1160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~ 1239 (1470)
T PLN03140 1160 LYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRS 1239 (1470)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 77665544432221111111111235688999999999999999999999999999999999999999999998775544
Q ss_pred h-hhHHHHHHHHHHHHHHHHHhhh-hhhHHHHHhHHhHhhccC
Q 044411 323 V-FHANYFMGSLFYALVILIVDGI-SEIPMTLERLAVFYKQKE 363 (363)
Q Consensus 323 ~-~~~~~~~g~lf~~~~~~~~~~~-~~~~~~~~~r~vf~~er~ 363 (363)
+ .+.++++|++|+++++.++..+ +.+|.+..+|+||+|||+
T Consensus 1240 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~ 1282 (1470)
T PLN03140 1240 NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERA 1282 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3678889999999999888665 556889999999999984
No 9
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.7e-46 Score=407.42 Aligned_cols=309 Identities=27% Similarity=0.401 Sum_probs=247.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|++.+++.+||+||+.|++.++.... ....++ .++++++++.+||.+++|+.
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~-------~~~~~~------------~~~v~~~l~~l~L~~~~d~~ 894 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKS-------VSKSEK------------MEYVEEVIKLLEMESYADAV 894 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCC-------CCHHHH------------HHHHHHHHHHcCChhhCCCe
Confidence 46789999999999999999999999876542110 011111 12488999999999999999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCc-EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIK-AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~-lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+|+. ..+|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+|||+++||+...+++.||+
T Consensus 895 v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 895 VGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDR 972 (1394)
T ss_pred eCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCE
Confidence 9853 34799999999999999999997 9999999999999999999999999986 5899999999998777889999
Q ss_pred eeeecCC-eEEEecCCC----------------CCCCCCChHHHHHHhcCcchhhhhhhcCCCCCCCCChHHHHHHHhcC
Q 044411 179 IILMAEG-KILYHGPRK----------------VCPDRKAVADFVLEVISRKDQAQYWFHNELPHSFVPVDMFHKKFKES 241 (363)
Q Consensus 179 v~vL~~G-~iv~~G~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 241 (363)
+++|++| ++++.|+++ .||.+.||+||++++++..... ....++.+.|+.|
T Consensus 973 vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~------------~~~~~~~~~~~~s 1040 (1394)
T TIGR00956 973 LLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA------------HANQDYHEVWRNS 1040 (1394)
T ss_pred EEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc------------chhccHHHHHhcC
Confidence 9999987 999999862 6899999999999987642211 0113467788888
Q ss_pred hhhhhHHHHHHhhhhccc---ccccccccccccCcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhccC
Q 044411 242 PFGKKLEEDLSELYDKSE---SKKRSVSFAVFSLSRWEVFKACMSRELLLAKRNYFLYLFKTIQIIIIATMTMTLFLRTG 318 (363)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~ 318 (363)
...++..+.+........ ..........|+.|+|+|+++|++|+++++||||.++++|+++++++|+++|++||+++
T Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~ 1120 (1394)
T TIGR00956 1041 SEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG 1120 (1394)
T ss_pred HHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 766555444433221100 00011122468899999999999999999999999999999999999999999999665
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHhH-hhccC
Q 044411 319 MEVDVFHANYFMGSLFYALVILIVDGISEIPMTLERLAVF-YKQKE 363 (363)
Q Consensus 319 ~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~r~vf-~~er~ 363 (363)
.+..++++++|++|+++++..+.....+|.++.+|.+| +|||.
T Consensus 1121 --~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~ 1164 (1394)
T TIGR00956 1121 --TSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERP 1164 (1394)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 45557899999999999887777677788888888775 99984
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=256.40 Aligned_cols=160 Identities=26% Similarity=0.307 Sum_probs=132.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.+|+|||+.++||++||.||+.++...- ....+.+ +.+++.++|+.+||.+.+|..
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v---------~~~~k~e------------A~~~A~~lL~~VGL~~ka~~y 133 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKV---------KKLSKAE------------AREKALELLEKVGLADKADAY 133 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHH---------cCCCHHH------------HHHHHHHHHHHcCchhhhhhC
Confidence 5788999999999999999999999875321 1111221 123588899999999998865
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
. ..|||||||||+|||||+.+|+++|+|||||+|||....++++.++++|+ .|.|.+++||. +..+.+.+|||
T Consensus 134 P-----~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~Vadrv 206 (240)
T COG1126 134 P-----AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRV 206 (240)
T ss_pred c-----cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheE
Confidence 5 56999999999999999999999999999999999999999999999997 48999999864 56999999999
Q ss_pred eeecCCeEEEecCCCCC---CCCCChHHHHH
Q 044411 180 ILMAEGKILYHGPRKVC---PDRKAVADFVL 207 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~---~~~~~~~~~~~ 207 (363)
++|++|+++..|++++. |.++...+|+.
T Consensus 207 iFmd~G~iie~g~p~~~f~~p~~~R~~~FL~ 237 (240)
T COG1126 207 IFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237 (240)
T ss_pred EEeeCCEEEEecCHHHHhcCCCCHHHHHHHH
Confidence 99999999999988743 33344455554
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=254.51 Aligned_cols=163 Identities=22% Similarity=0.277 Sum_probs=138.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.||++||+..++...||.||+.|+..+.+.. +.+. ..|+.++|+.+||++.++..
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~----------k~ei------------~~RV~elLelVgL~dk~~~y 138 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP----------KAEI------------KQRVAELLELVGLSDKADRY 138 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCC----------HHHH------------HHHHHHHHHHcCChhhhccC
Confidence 5788999999999999999999999998765421 1111 13699999999999988765
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
. .+|||||||||+|||||+.+|+|||+|||||+|||.+...|+++|+++.++.|.||++++|+. +-+.++||||
T Consensus 139 P-----~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rV 212 (339)
T COG1135 139 P-----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRV 212 (339)
T ss_pred c-----hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhh
Confidence 4 569999999999999999999999999999999999999999999999999999999998764 6889999999
Q ss_pred eeecCCeEEEecCCCCC---CCCCChHHHHHHhc
Q 044411 180 ILMAEGKILYHGPRKVC---PDRKAVADFVLEVI 210 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~---~~~~~~~~~~~~~~ 210 (363)
.+|++|+++..|+..+. |.+....+|+....
T Consensus 213 avm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 213 AVLDQGRLVEEGTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred eEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhc
Confidence 99999999999998743 33333455555443
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=5.7e-32 Score=253.41 Aligned_cols=148 Identities=32% Similarity=0.434 Sum_probs=127.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+||++|++.+++.+||+|||.|.+.+++... .. ...+++++++.+||.+..+++
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~----------~~------------~~~~~~~~l~~~~L~~~~~~~ 133 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK----------EE------------AEERIEELLELFGLEDKANKK 133 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh----------hH------------HHHHHHHHHHHcCCchhhCcc
Confidence 46789999999999999999999999988775321 00 012488999999999865555
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ++||+||||||+||+||+++|++|||||||+||||.++..++++|+++++++++||++|+|++ +++..+||+|
T Consensus 134 ~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v 207 (293)
T COG1131 134 V-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRV 207 (293)
T ss_pred h-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEE
Confidence 5 469999999999999999999999999999999999999999999999986558999988766 5899999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 208 ~il~~G~~~~~g~~~~ 223 (293)
T COG1131 208 IILNDGKIIAEGTPEE 223 (293)
T ss_pred EEEeCCEEEEeCCHHH
Confidence 9999999999997653
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=6.2e-32 Score=238.63 Aligned_cols=150 Identities=25% Similarity=0.264 Sum_probs=130.8
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc--cc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI--CA 96 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~ 96 (363)
..|+.||||-|.-.+||++||.||+.+...+.+.. +.+. ..+++++|+.+||++ ++
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~----------k~~i------------~~r~~ELl~lvgL~p~~~~ 129 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD----------KERI------------KKRADELLDLVGLDPSEYA 129 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC----------HHHH------------HHHHHHHHHHhCCCHHHHh
Confidence 46899999999999999999999999877665421 1111 126999999999975 55
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+ +++++|||||||||.+||||+.+|++||+|||+++|||.++..+.+.++++.++.|+|||++|| +.+|++.++
T Consensus 130 ~-----RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLa 203 (309)
T COG1125 130 D-----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLA 203 (309)
T ss_pred h-----cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhh
Confidence 5 4567899999999999999999999999999999999999999999999999989999999985 567999999
Q ss_pred cceeeecCCeEEEecCCCCC
Q 044411 177 DDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~~ 196 (363)
|||++|++|+++..++|++.
T Consensus 204 dri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 204 DRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred ceEEEecCCeEEEeCCHHHH
Confidence 99999999999999998754
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=6e-32 Score=237.38 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=128.7
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc-cc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC-AD 97 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 97 (363)
..++.+|+++|...+|..+||+||+.|..+-+.. +.+.... +.+..-|+.+||... ++
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~---------lp~~~i~------------~lv~~KL~~VGL~~~~~~ 140 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK---------LPESLIR------------ELVLMKLELVGLRGAAAD 140 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhcc---------CCHHHHH------------HHHHHHHHhcCCChhhhh
Confidence 4578899999999999999999999997654321 1111110 125566899999876 44
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.++.+|||||+||++||||++.+|+++|+||||+||||.++..+.++|+++.+..|.|++++||+. ++++.+||
T Consensus 141 -----~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~D 214 (263)
T COG1127 141 -----LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIAD 214 (263)
T ss_pred -----hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhc
Confidence 456679999999999999999999999999999999999999999999999998899999998765 58999999
Q ss_pred ceeeecCCeEEEecCCCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVCPD 198 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~~~ 198 (363)
++++|.+|++++.|++++...
T Consensus 215 rv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 215 RVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred eEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999886543
No 15
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.2e-31 Score=225.63 Aligned_cols=165 Identities=19% Similarity=0.286 Sum_probs=140.1
Q ss_pred CccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc
Q 044411 11 GLSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL 90 (363)
Q Consensus 11 ~~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 90 (363)
|+++++.....|-+++++|+.++|..+||.+|+.++.... . ++...+ .++++.++..+
T Consensus 60 g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~---L------kL~a~~-------------r~~v~~aa~~v 117 (231)
T COG3840 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG---L------KLNAEQ-------------REKVEAAAAQV 117 (231)
T ss_pred CeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc---c------ccCHHH-------------HHHHHHHHHHh
Confidence 4566666677889999999999999999999998875321 1 111111 12588999999
Q ss_pred CCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 91 GLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 91 gL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
||..+.+++.+ +|||||||||++||+|+.+-+||+||||+|.|||.-+.++..++.+++.+.+.|++++||||.
T Consensus 118 Gl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~- 191 (231)
T COG3840 118 GLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE- 191 (231)
T ss_pred ChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-
Confidence 99999888776 599999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhhhcceeeecCCeEEEecCCCCCCCCCChH
Q 044411 171 ETFDLFDDIILMAEGKILYHGPRKVCPDRKAVA 203 (363)
Q Consensus 171 ~~~~~~D~v~vL~~G~iv~~G~~~~~~~~~~~~ 203 (363)
++..++|+++++++|+|.+.|+.++......++
T Consensus 192 Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~~ 224 (231)
T COG3840 192 DAARIADRVVFLDNGRIAAQGSTQELLSGKASA 224 (231)
T ss_pred HHHHhhhceEEEeCCEEEeeccHHHHhccCChH
Confidence 889999999999999999999987554444443
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=251.32 Aligned_cols=168 Identities=26% Similarity=0.298 Sum_probs=143.3
Q ss_pred CccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc
Q 044411 11 GLSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL 90 (363)
Q Consensus 11 ~~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 90 (363)
|.+++..+..+|.+|+|||+..+||+|||+||+.|+.+.++... .+. ..+++++.+.+
T Consensus 64 g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k----------~ei------------~~rV~eva~~L 121 (338)
T COG3839 64 GRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK----------AEI------------DKRVKEVAKLL 121 (338)
T ss_pred CEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch----------HHH------------HHHHHHHHHHc
Confidence 45566666678999999999999999999999999987764321 111 12699999999
Q ss_pred CCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 91 GLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 91 gL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
+|++..|++. ++|||||||||+|||||+.+|+++|||||+|.||...+..+...|+++.++.|.|+|.+||+. .
T Consensus 122 ~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~ 195 (338)
T COG3839 122 GLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-V 195 (338)
T ss_pred CChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-H
Confidence 9999998765 469999999999999999999999999999999999999999999999988899999998765 5
Q ss_pred HHHhhhcceeeecCCeEEEecCCCC---CCCCCChHHHH
Q 044411 171 ETFDLFDDIILMAEGKILYHGPRKV---CPDRKAVADFV 206 (363)
Q Consensus 171 ~~~~~~D~v~vL~~G~iv~~G~~~~---~~~~~~~~~~~ 206 (363)
|+..++|||++|++|++...|++.+ .|.+..++.|+
T Consensus 196 EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~Fi 234 (338)
T COG3839 196 EAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFI 234 (338)
T ss_pred HHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhc
Confidence 9999999999999999999999874 45555556665
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-31 Score=253.07 Aligned_cols=172 Identities=26% Similarity=0.295 Sum_probs=146.6
Q ss_pred cCccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHH
Q 044411 10 FGLSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKI 89 (363)
Q Consensus 10 ~~~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 89 (363)
.|.++++.+..+|.+|+|||+..+||+|||+||+.|+.+.++... +.+. .++++++++.
T Consensus 65 ~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~---------~~~i------------~~rv~e~L~l 123 (352)
T COG3842 65 DGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK---------KAEI------------KARVEEALEL 123 (352)
T ss_pred CCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC---------HHHH------------HHHHHHHHHH
Confidence 357778888889999999999999999999999999987432111 1111 1269999999
Q ss_pred cCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 90 LGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 90 lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
++|++.+++.+ .+|||||||||+|||||+.+|++||||||.|+||..-+.++...++++.++.|.|.|++||+.
T Consensus 124 V~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq- 197 (352)
T COG3842 124 VGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ- 197 (352)
T ss_pred cCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-
Confidence 99999887665 569999999999999999999999999999999999999999999999988899999998765
Q ss_pred hHHHhhhcceeeecCCeEEEecCCCC---CCCCCChHHHHHH
Q 044411 170 PETFDLFDDIILMAEGKILYHGPRKV---CPDRKAVADFVLE 208 (363)
Q Consensus 170 ~~~~~~~D~v~vL~~G~iv~~G~~~~---~~~~~~~~~~~~~ 208 (363)
+|++.++|||++|++|++...|+|++ .|.+..+++|+.+
T Consensus 198 eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~ 239 (352)
T COG3842 198 EEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGE 239 (352)
T ss_pred HHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhCc
Confidence 69999999999999999999999984 4555566777754
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.8e-31 Score=226.10 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=130.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.||.++.+..+|..||++|||.|.+++++.. +.+.+ .+++++.+.|+|.++.|+.
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~----------~~~~k------------ari~~l~k~l~l~~~~~rR 130 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLS----------RKEIK------------ARIAELSKRLQLLEYLDRR 130 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh----------hhHHH------------HHHHHHHHHhChHHHHHHH
Confidence 5788999998889999999999999998876532 11111 2588899999999999999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+ +|.|+||||+|||||+++|++++|||||||||..+...+.+.++++.+ .|++||+++| .++++..+||+|
T Consensus 131 v~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH-~m~EvealCDrv 203 (245)
T COG4555 131 VGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRV 203 (245)
T ss_pred Hhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheE
Confidence 985 999999999999999999999999999999999999999999999975 5899999875 667999999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 204 ivlh~Gevv~~gs~~~ 219 (245)
T COG4555 204 IVLHKGEVVLEGSIEA 219 (245)
T ss_pred EEEecCcEEEcCCHHH
Confidence 9999999999998763
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=232.65 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=130.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+++.+||++|++.+.+.+||.+|+..+...+... ......+...+. ...+-+.|+.+|+.+.+-++
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~--~~slfglfsk~d------------k~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTST--WRSLFGLFSKED------------KAQALDALERVGILDKAYQR 144 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchH--HHHHhCCCCHHH------------HHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999998875433211 111112211111 12477889999999998888
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.++ |||||||||+|||||+++|+++|.|||+++|||.++..+|+.|++++++.|.|+|++.|+. +-+.++|||+
T Consensus 145 a~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Ri 218 (258)
T COG3638 145 AST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRI 218 (258)
T ss_pred hcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhh
Confidence 764 9999999999999999999999999999999999999999999999999999999998765 5889999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
+-|++|+++|+|++.+
T Consensus 219 igl~~G~ivfDg~~~e 234 (258)
T COG3638 219 IGLKAGRIVFDGPASE 234 (258)
T ss_pred eEecCCcEEEeCChhh
Confidence 9999999999999875
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=5.3e-31 Score=238.29 Aligned_cols=161 Identities=24% Similarity=0.287 Sum_probs=133.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
..|.+|||||.....+.+||+|.+.++...+... +...... +++.+++.|+.+|+.+.+++.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~-----~~~~~~~-------------D~~~v~~aL~~~~~~~la~r~ 135 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL-----FGRPSKE-------------DEEIVEEALELLGLEHLADRP 135 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCccccc-----ccCCCHh-------------HHHHHHHHHHHhCcHHHhcCc
Confidence 3578999999998889999999999875432110 0000111 112488899999999999988
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. .|||||||||.|||||+++|++||||||||.||...+.++++++++++++.|.|||+++|++. .+..+||++
T Consensus 136 ~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~ 209 (258)
T COG1120 136 VD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHL 209 (258)
T ss_pred cc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEE
Confidence 76 599999999999999999999999999999999999999999999999888999999997765 899999999
Q ss_pred eeecCCeEEEecCCCCCCCCCChHH
Q 044411 180 ILMAEGKILYHGPRKVCPDRKAVAD 204 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~~~~~~~~~ 204 (363)
++|++|++++.|+|++....+..++
T Consensus 210 i~lk~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 210 ILLKDGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred EEEECCeEEeecCcchhcCHHHHHH
Confidence 9999999999999876544433333
No 21
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.8e-30 Score=230.47 Aligned_cols=138 Identities=25% Similarity=0.351 Sum_probs=117.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc-cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD-TL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~ 99 (363)
++.+|||+|+..++|.+||.||+.++..+.+.... .. ..+++.+++.+||.+..+ ++
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~----------~~------------~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG----------RR------------KRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh----------HH------------HHHHHHHHHhcCChhhhccCC
Confidence 46799999999999999999999987765432110 00 124788899999987655 44
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ..|||||||||+|||||+++|+++|.||||..||+.+...|++++++++++.|+|+|++||++ .+..+|||+
T Consensus 140 p-----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~ 212 (226)
T COG1136 140 P-----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRV 212 (226)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEE
Confidence 4 569999999999999999999999999999999999999999999999987899999999865 688899999
Q ss_pred eeecCCeE
Q 044411 180 ILMAEGKI 187 (363)
Q Consensus 180 ~vL~~G~i 187 (363)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999984
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.7e-31 Score=237.23 Aligned_cols=163 Identities=23% Similarity=0.334 Sum_probs=135.2
Q ss_pred cccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 18 FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 18 ~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
....|.||||+|+..+|+.|||.+|+.|+.+.+... + ...+ ...++.++|+.+.|++.++
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~-----p---~~~~------------~r~rv~elL~lvqL~~la~ 132 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER-----P---SEAE------------IRARVEELLRLVQLEGLAD 132 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccC-----C---Chhh------------HHHHHHHHHHHhcccchhh
Confidence 445688999999999999999999999998765211 0 0011 1126899999999999877
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
. ++.+|||||||||++||||+.+|++||||||+++||...+.++...|+++.++.|.|++++||+. ++++++||
T Consensus 133 r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~lad 206 (345)
T COG1118 133 R-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELAD 206 (345)
T ss_pred c-----CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcc
Confidence 5 45679999999999999999999999999999999999999999999999887799999988655 69999999
Q ss_pred ceeeecCCeEEEecCCCCC---CCCCChHHHH
Q 044411 178 DIILMAEGKILYHGPRKVC---PDRKAVADFV 206 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~---~~~~~~~~~~ 206 (363)
||++|++|+|...|++++. |....+..|+
T Consensus 207 rvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~ 238 (345)
T COG1118 207 RVVVLNQGRIEQVGPPDEVYDHPASRFVARFL 238 (345)
T ss_pred eEEEecCCeeeeeCCHHHHhcCCCccceeccc
Confidence 9999999999999998854 4433344444
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.3e-30 Score=231.25 Aligned_cols=155 Identities=21% Similarity=0.325 Sum_probs=124.5
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
..||||||... .-..+||+|.+..+...+... +......+ .++++++|+.+|+.+.+|+.
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~-----~~~~~~~d-------------~~~v~~aL~~Vgm~~~~~r~ 136 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-----FRRLNKKD-------------KEKVDEALERVGMEDLRDRQ 136 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccc-----cccccHHH-------------HHHHHHHHHHcCchhhhCCc
Confidence 57999999642 234489999998874432110 10111111 12599999999999999999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+ |||||+|||.|||||+++|++|+|||||+|+|+.++..|+++|++++++ |+||++++|+. ..+.++||+|
T Consensus 137 i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~v 209 (254)
T COG1121 137 IGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRV 209 (254)
T ss_pred ccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEE
Confidence 885 9999999999999999999999999999999999999999999999986 99999987655 5899999999
Q ss_pred eeecCCeEEEecCCCCCCCCCCh
Q 044411 180 ILMAEGKILYHGPRKVCPDRKAV 202 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~~~~~~~ 202 (363)
++|++ ++++.|++++.....+.
T Consensus 210 i~Ln~-~~~~~G~~~~~~~~~~l 231 (254)
T COG1121 210 ICLNR-HLIASGPPEEVLTEENL 231 (254)
T ss_pred EEEcC-eeEeccChhhccCHHHH
Confidence 99955 78889998866544333
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=223.89 Aligned_cols=159 Identities=23% Similarity=0.302 Sum_probs=127.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 98 (363)
.|+.+|+|+|.+..|| +|++||+.|+.++++... +.+ .+.|+..|+...|.+ ..|.
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~--~~l--------------------deiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD--KEL--------------------DEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccch--HHH--------------------HHHHHHHHHHhHhHHHhHHH
Confidence 5889999999999999 999999999988876432 111 013666666666643 3343
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+- ....+||||||||++|||||+.+|+|||||||||+|||.+..+|-++|.++++ .-|||++|| .+..+.+..|+
T Consensus 143 L~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~ 217 (253)
T COG1117 143 LH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDY 217 (253)
T ss_pred hh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHh
Confidence 31 23456999999999999999999999999999999999999999999999974 579988885 56799999999
Q ss_pred eeeecCCeEEEecCCCCC---CCCCChHHHH
Q 044411 179 IILMAEGKILYHGPRKVC---PDRKAVADFV 206 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~---~~~~~~~~~~ 206 (363)
..++..|+++++|+++.. |.++...||+
T Consensus 218 taFf~~G~LvE~g~T~~iF~~P~~~~TedYi 248 (253)
T COG1117 218 TAFFYLGELVEFGPTDKIFTNPKHKRTEDYI 248 (253)
T ss_pred hhhhcccEEEEEcCHHhhhcCccHHHHHHHh
Confidence 999999999999998743 4444445554
No 25
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-30 Score=229.12 Aligned_cols=142 Identities=24% Similarity=0.297 Sum_probs=121.6
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+...++||+|++.++|++||.||+.|+....+.. ..+. ..+++++|+.+||.+..+..
T Consensus 70 p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~----------~~e~------------~~~a~~~L~~VgL~~~~~~~ 127 (248)
T COG1116 70 PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS----------KAEA------------RERAKELLELVGLAGFEDKY 127 (248)
T ss_pred CCCCEEEEeccCcccchhhHHhhheehhhccccc----------hHhH------------HHHHHHHHHHcCCcchhhcC
Confidence 5667999999999999999999999987664311 1111 12588999999999988765
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+++|||||||||+|||||+.+|++||||||+++||+.++..+.+.+.++.++.+.||+++||+. +|+..++|||
T Consensus 128 -----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRi 201 (248)
T COG1116 128 -----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRV 201 (248)
T ss_pred -----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEE
Confidence 5679999999999999999999999999999999999999999999999988899999998755 6888899999
Q ss_pred eeecC--CeEEE
Q 044411 180 ILMAE--GKILY 189 (363)
Q Consensus 180 ~vL~~--G~iv~ 189 (363)
++|.+ |++..
T Consensus 202 vvl~~~P~~i~~ 213 (248)
T COG1116 202 VVLSNRPGRIGE 213 (248)
T ss_pred EEecCCCcceee
Confidence 99998 45543
No 26
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=222.40 Aligned_cols=170 Identities=20% Similarity=0.246 Sum_probs=139.6
Q ss_pred CccccCcccc---ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHH
Q 044411 11 GLSVTGEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNL 87 (363)
Q Consensus 11 ~~~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 87 (363)
+.|++..+.. +..+||+||+...|..+||+||+......+.... ...+. ..+++++|
T Consensus 65 ~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~--------~~~~~------------~~~l~~LL 124 (243)
T COG1137 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL--------KKAER------------KEELDALL 124 (243)
T ss_pred CcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcch--------hHHHH------------HHHHHHHH
Confidence 4566666554 3469999999999999999999988765542110 00111 12478999
Q ss_pred HHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 88 KILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 88 ~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
+.|++.++++++.. .||||||+|+.|||||+.+|+.+|||||++|+||.+..+|.++++.++. .|.-|++|- |
T Consensus 125 ~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITD-H 197 (243)
T COG1137 125 EEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITD-H 197 (243)
T ss_pred HHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcc-c
Confidence 99999999998765 5999999999999999999999999999999999999999999999986 588888875 5
Q ss_pred CChHHHhhhcceeeecCCeEEEecCCCCCCCCCChHHHHH
Q 044411 168 PSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAVADFVL 207 (363)
Q Consensus 168 ~~~~~~~~~D~v~vL~~G~iv~~G~~~~~~~~~~~~~~~~ 207 (363)
...+.+.+|||.+++++|++.++|++++..+++.+..+|+
T Consensus 198 NVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~~YL 237 (243)
T COG1137 198 NVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYL 237 (243)
T ss_pred cHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhhhcc
Confidence 5669999999999999999999999987777666665553
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.3e-30 Score=246.23 Aligned_cols=150 Identities=23% Similarity=0.261 Sum_probs=127.9
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
..++.+|||+|+..+||.+||+||+.|+.+.++.. ..+. ..+++++++.+||.+..++
T Consensus 73 ~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~ 130 (356)
T PRK11650 73 PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP----------KAEI------------EERVAEAARILELEPLLDR 130 (356)
T ss_pred HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC----------HHHH------------HHHHHHHHHHcCChhHhhC
Confidence 34678999999999999999999999976432110 0111 1247889999999988877
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|++||+. .++..+||+
T Consensus 131 ~~~-----~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~ 204 (356)
T PRK11650 131 KPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADR 204 (356)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCE
Confidence 664 69999999999999999999999999999999999999999999999876689999998766 589999999
Q ss_pred eeeecCCeEEEecCCCCC
Q 044411 179 IILMAEGKILYHGPRKVC 196 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~ 196 (363)
+++|++|+++..|++++.
T Consensus 205 i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 205 VVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred EEEEeCCEEEEECCHHHH
Confidence 999999999999998743
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=7.1e-30 Score=245.09 Aligned_cols=156 Identities=20% Similarity=0.256 Sum_probs=130.1
Q ss_pred cccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC
Q 044411 13 SVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL 92 (363)
Q Consensus 13 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 92 (363)
++......++.+|||+|+..+||.+||+||+.|+...++.. ..+. ..+++++++.+||
T Consensus 67 ~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----------~~~~------------~~~~~~~l~~l~L 124 (353)
T TIGR03265 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----------RAEV------------AERVAELLDLVGL 124 (353)
T ss_pred ECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCC
Confidence 33333334678999999999999999999999976432110 1111 1248889999999
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|++||++ .++
T Consensus 125 ~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea 198 (353)
T TIGR03265 125 PGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEA 198 (353)
T ss_pred CchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHH
Confidence 99887665 469999999999999999999999999999999999999999999999876689999998766 589
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
..+||++++|++|+++..|++++.
T Consensus 199 ~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 199 LSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999988743
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.6e-30 Score=244.55 Aligned_cols=156 Identities=24% Similarity=0.311 Sum_probs=130.1
Q ss_pred cccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC
Q 044411 13 SVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL 92 (363)
Q Consensus 13 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 92 (363)
++.+....++.+|||+|+..+||.+||+||+.|+...++.. ..+. .++++++++.+||
T Consensus 69 ~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~----------~~~~------------~~~v~~~l~~~gl 126 (351)
T PRK11432 69 DVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP----------KEER------------KQRVKEALELVDL 126 (351)
T ss_pred ECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC----------HHHH------------HHHHHHHHHHcCC
Confidence 33333344678999999999999999999999986543211 1111 1248889999999
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|++||+. .++
T Consensus 127 ~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~ 200 (351)
T PRK11432 127 AGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEA 200 (351)
T ss_pred chhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHH
Confidence 98877665 469999999999999999999999999999999999999999999999876689999998766 589
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
..+||+|++|++|+++..|++++.
T Consensus 201 ~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 201 FAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998743
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=1.2e-29 Score=243.92 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=127.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|+..+||.+||+||+.|+...++.. ..+. ..+++++++.+||++..++.
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~----------~~~~------------~~~v~~~l~~~gL~~~~~~~ 134 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMP----------KADI------------AERVADALKLVGLGDAAAHL 134 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHhcCCCchhhCC
Confidence 4678999999999999999999999986533211 0110 12478899999999888876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcC-CCEEEEEecCCChHHHhhhcc
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHIT-DATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~-g~tii~~~h~~~~~~~~~~D~ 178 (363)
++ .|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++. |.|+|++||+. +++..+||+
T Consensus 135 ~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dr 208 (362)
T TIGR03258 135 PA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADK 208 (362)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCE
Confidence 65 699999999999999999999999999999999999999999999998764 78999988765 588999999
Q ss_pred eeeecCCeEEEecCCCCC
Q 044411 179 IILMAEGKILYHGPRKVC 196 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~ 196 (363)
|++|++|+++..|++++.
T Consensus 209 i~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 209 AGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred EEEEECCEEEEEcCHHHH
Confidence 999999999999998743
No 31
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=1.9e-29 Score=243.49 Aligned_cols=161 Identities=24% Similarity=0.287 Sum_probs=132.1
Q ss_pred cccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 18 FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 18 ~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
...++.+|||+|+..+||.+||+||+.|+...++.. ..+. ..+++++++.+||.+..+
T Consensus 82 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~ 139 (375)
T PRK09452 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP----------AAEI------------TPRVMEALRMVQLEEFAQ 139 (375)
T ss_pred CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC----------HHHH------------HHHHHHHHHHcCCchhhh
Confidence 334678999999999999999999999976432210 0110 124788999999998888
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+. .|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||++ .++..++|
T Consensus 140 ~~p~-----~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laD 213 (375)
T PRK09452 140 RKPH-----QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSD 213 (375)
T ss_pred CChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCC
Confidence 7654 69999999999999999999999999999999999999999999999876689999998765 58999999
Q ss_pred ceeeecCCeEEEecCCCCC---CCCCChHHHH
Q 044411 178 DIILMAEGKILYHGPRKVC---PDRKAVADFV 206 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~---~~~~~~~~~~ 206 (363)
++++|++|+++..|++++. |.+..+++|+
T Consensus 214 ri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~ 245 (375)
T PRK09452 214 RIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245 (375)
T ss_pred EEEEEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 9999999999999987633 3333445544
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.4e-29 Score=242.08 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=127.0
Q ss_pred cccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 18 FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 18 ~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
...++.+|||+|+..+||.+||.||+.|+...++.. ..+. .+++.++++.+||.+..+
T Consensus 87 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----------~~~~------------~~~v~~~l~~l~L~~~~~ 144 (377)
T PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP----------KAEI------------ASRVNEMLGLVHMQEFAK 144 (377)
T ss_pred CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhc
Confidence 344678999999999999999999999976432110 0111 124788999999998877
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ ++|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||++ .++..+||
T Consensus 145 ~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laD 218 (377)
T PRK11607 145 RKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAG 218 (377)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCC
Confidence 665 469999999999999999999999999999999999999999999998776689999998765 58999999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
++++|++|+++..|++++
T Consensus 219 ri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 219 RIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred EEEEEeCCEEEEEcCHHH
Confidence 999999999999999864
No 33
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=219.85 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=135.1
Q ss_pred cCccccCccc---cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHH
Q 044411 10 FGLSVTGEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYN 86 (363)
Q Consensus 10 ~~~~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 86 (363)
.|.|+++.+. .++.++||||...+||.|||+|||..++....... .. ...++++
T Consensus 63 ~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~------------~~-----------~~~~e~v 119 (237)
T COG0410 63 DGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE------------AQ-----------ERDLEEV 119 (237)
T ss_pred CCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc------------cc-----------cccHHHH
Confidence 3677777654 35679999999999999999999998765432100 00 0014556
Q ss_pred HHHcC-CcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEe
Q 044411 87 LKILG-LDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165 (363)
Q Consensus 87 l~~lg-L~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~ 165 (363)
.+.|- |.+..+++.|+ |||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++.|.||+++
T Consensus 120 ~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV- 193 (237)
T COG0410 120 YELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV- 193 (237)
T ss_pred HHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE-
Confidence 66663 66777777775 999999999999999999999999999999999999999999999998768888885
Q ss_pred cCCChHHHhhhcceeeecCCeEEEecCCCCCCCCCChHHHH
Q 044411 166 LQPSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAVADFV 206 (363)
Q Consensus 166 h~~~~~~~~~~D~v~vL~~G~iv~~G~~~~~~~~~~~~~~~ 206 (363)
+|....+++++||.++|.+|+++++|+.++...+......+
T Consensus 194 EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~~y 234 (237)
T COG0410 194 EQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234 (237)
T ss_pred eccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHHHh
Confidence 68888999999999999999999999988665554444433
No 34
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=5.3e-29 Score=237.70 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=125.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||++|+..+++.+||+||+.++....+.. ..+. .+++.++++.+||.+..+..+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----------~~~~------------~~~v~e~l~~vgL~~~~~~~~ 138 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----------KDEI------------KRKVTELLALVGLGDKHDSYP 138 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhhCCh
Confidence 567999999999999999999999875432210 0010 124788999999998887665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+++|++|||||||+|||+.++..++++|++++++.|.|||+++|+. +.+.++||+++
T Consensus 139 ~-----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~ 212 (343)
T TIGR02314 139 S-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVA 212 (343)
T ss_pred h-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 69999999999999999999999999999999999999999999999876689999988764 58889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 213 vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 213 VISNGELIEQGTVSE 227 (343)
T ss_pred EEECCEEEEEcCHHH
Confidence 999999999998764
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.3e-29 Score=221.12 Aligned_cols=179 Identities=21% Similarity=0.241 Sum_probs=141.3
Q ss_pred CccccCcccc---ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHH
Q 044411 11 GLSVTGEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNL 87 (363)
Q Consensus 11 ~~~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 87 (363)
|.++++.+.. +..++..||...+|+.|||.||+..++..+.. . .......... ....+..+++.++|
T Consensus 65 G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~--~~~l~~~~~~-------~~e~~~~e~A~~~L 134 (250)
T COG0411 65 GRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-L--SGLLGRPRAR-------KEEREARERARELL 134 (250)
T ss_pred CcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-h--hhhhccccch-------hhHHHHHHHHHHHH
Confidence 4556665543 45789999999999999999999998654421 0 0000000000 00112234688999
Q ss_pred HHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 88 KILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 88 ~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
+.+||.+.+|++.|+ ||+|||||+.|||||+.+|++||||||.+||.+....++.+.|+++++..|.||+++- |
T Consensus 135 e~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIE-H 208 (250)
T COG0411 135 EFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE-H 208 (250)
T ss_pred HHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEE-e
Confidence 999999999999886 9999999999999999999999999999999999999999999999986778988865 6
Q ss_pred CChHHHhhhcceeeecCCeEEEecCCCCCCCCCChHHH
Q 044411 168 PSPETFDLFDDIILMAEGKILYHGPRKVCPDRKAVADF 205 (363)
Q Consensus 168 ~~~~~~~~~D~v~vL~~G~iv~~G~~~~~~~~~~~~~~ 205 (363)
++..++.+||||+||+.|+++++|+|++..++..+.+.
T Consensus 209 dM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~VieA 246 (250)
T COG0411 209 DMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVIEA 246 (250)
T ss_pred ccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhHHH
Confidence 77899999999999999999999999876665544443
No 36
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.2e-30 Score=228.50 Aligned_cols=146 Identities=25% Similarity=0.360 Sum_probs=128.5
Q ss_pred cccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 18 FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 18 ~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
+..+|.+|||||+-.+||++||+-||.|+...-. ....+.+.+.+|++|..+
T Consensus 72 p~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~----------------------------~~~fd~iv~lLGI~hLL~ 123 (352)
T COG4148 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSM----------------------------RAQFDQLVALLGIEHLLD 123 (352)
T ss_pred ChhhheeeeEeeccccccceEEecchhhhhcccc----------------------------hHhHHHHHHHhCcHHHHh
Confidence 3458899999999999999999999999753210 012677899999999988
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+... .|||||||||+|||||++.|++||||||.+.||...+.+++-.|.+++++.+..|+.++|.. +|+.+++|
T Consensus 124 R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd 197 (352)
T COG4148 124 RYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLAD 197 (352)
T ss_pred hCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhh
Confidence 7654 59999999999999999999999999999999999999999999999998888999988765 69999999
Q ss_pred ceeeecCCeEEEecCCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~~ 197 (363)
+|++|.+|++...|+.++..
T Consensus 198 ~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 198 RVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred eEEEecCCeEEecCcHHHHh
Confidence 99999999999999987443
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=5.2e-29 Score=235.27 Aligned_cols=147 Identities=29% Similarity=0.338 Sum_probs=124.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+||+||++.+++.+||+||+.|.+..++.. ..+. ..+++++++.++|.+..++.
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 135 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----------AAAA------------RALVPPLLEFAKLENKADAK 135 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchHhcCc
Confidence 3567999999999999999999999865443211 0000 11477889999999888887
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ +|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++++ .|+|||+++|+. +++.++||+|
T Consensus 136 ~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i 208 (306)
T PRK13537 136 VG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRL 208 (306)
T ss_pred hh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEE
Confidence 75 5999999999999999999999999999999999999999999999975 489999998765 5899999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|++++
T Consensus 209 ~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 209 CVIEEGRKIAEGAPHA 224 (306)
T ss_pred EEEECCEEEEECCHHH
Confidence 9999999999998753
No 38
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=228.77 Aligned_cols=162 Identities=27% Similarity=0.324 Sum_probs=139.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+++|||...++|+.||.||..|+...++... .+.+ +++.+.|+.+||+...+..
T Consensus 104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~----------~er~------------~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPK----------AERE------------ERALEALELVGLEGYADKY 161 (386)
T ss_pred HhhhhhhhhhhhccccchhHhhhhhcceeecCCCH----------HHHH------------HHHHHHHHHcCchhhhhcC
Confidence 35679999999999999999999999988776432 1111 2588899999999998876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.++.++||++++|+ .+|++++.|||
T Consensus 162 p-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD-LdEAlriG~rI 235 (386)
T COG4175 162 P-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRI 235 (386)
T ss_pred c-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC-HHHHHhccceE
Confidence 5 56999999999999999999999999999999999999999999999988889999998865 46999999999
Q ss_pred eeecCCeEEEecCCCCC---CCCCChHHHHHHh
Q 044411 180 ILMAEGKILYHGPRKVC---PDRKAVADFVLEV 209 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~---~~~~~~~~~~~~~ 209 (363)
.+|.+|+++..|+|++. |.+..+++|+..+
T Consensus 236 aimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHcCccHHHHHHHHhcC
Confidence 99999999999999853 5566667776543
No 39
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=7.7e-29 Score=210.21 Aligned_cols=146 Identities=19% Similarity=0.273 Sum_probs=124.8
Q ss_pred cccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 18 FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 18 ~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
+..||.||+|+||..+++..||+||+.|+.+..+... .+. ..++.++|+.+||.+.++
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~----------~~i------------~~rV~~~L~~VgL~~k~~ 132 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPP----------REI------------RRRVSEVLDLVGLKHKAR 132 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCH----------HHH------------HHHHHHHHHHhccchhhh
Confidence 3468999999999999999999999999887654221 111 125899999999999887
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
... ..|||||||||+||||++++|++||.||||.+|||..+.+|++++.++.+ .|+||+++||+ ..-+..+-.
T Consensus 133 ~lP-----~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~ 205 (223)
T COG2884 133 ALP-----SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRH 205 (223)
T ss_pred cCc-----cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccC
Confidence 664 46999999999999999999999999999999999999999999999986 69999999865 446677778
Q ss_pred ceeeecCCeEEEecC
Q 044411 178 DIILMAEGKILYHGP 192 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~ 192 (363)
|++.|.+|+++.+..
T Consensus 206 rvl~l~~Grl~~d~~ 220 (223)
T COG2884 206 RVLALEDGRLVRDES 220 (223)
T ss_pred cEEEEeCCEEEeccc
Confidence 999999999987643
No 40
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=9.7e-29 Score=237.24 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=125.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++||+|+..++|.+||+||+.|+....+.. ..+. .+++.++++.+||++..++.+
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~----------~~~~------------~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWP----------EQER------------KEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHhcCCchhhhCCh
Confidence 568999999999999999999999876443211 0111 124788999999988877766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+.++.++.|+|||+++|+. +++..+||+|+
T Consensus 128 ~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~ 201 (363)
T TIGR01186 128 D-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIV 201 (363)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999766689999998765 58899999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|+++..|++++.
T Consensus 202 vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEI 217 (363)
T ss_pred EEeCCEEEeeCCHHHH
Confidence 9999999999987643
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=8.8e-29 Score=237.54 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=126.2
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|+..++|.+||+||+.|+........ .....+. ..+++++++.++|.+..++.
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~------~~~~~~~------------~~~~~~~l~~~~L~~~~~~~ 133 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE------RPNAAAI------------KAKVTQLLEMVQLAHLADRY 133 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc------CCCHHHH------------HHHHHHHHHHcCCchhhhCC
Confidence 35679999999999999999999998754321000 0000010 12478899999999887766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ .++..+||+|
T Consensus 134 ~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri 207 (353)
T PRK10851 134 P-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRV 207 (353)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 5 469999999999999999999999999999999999999999999999876688999988765 5899999999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|+++..|++++.
T Consensus 208 ~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 208 VVMSQGNIEQAGTPDQV 224 (353)
T ss_pred EEEECCEEEEEcCHHHH
Confidence 99999999999987643
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=237.62 Aligned_cols=148 Identities=21% Similarity=0.286 Sum_probs=125.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|+..++|.+||+||+.|+...++.. ..+. ..+++++++.+||.+..++.
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~----------~~~~------------~~~~~~~l~~lgL~~~~~~~ 130 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK----------KEEI------------NQRVNQVAEVLQLAHLLDRK 130 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC----------HHHH------------HHHHHHHHHHcCChhhhcCC
Confidence 3567999999999999999999999875432110 0010 12478889999999887776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|+++|+. +++..+||++
T Consensus 131 ~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i 204 (369)
T PRK11000 131 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKI 204 (369)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEE
Confidence 64 59999999999999999999999999999999999999999999999875688999998766 5889999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+++..|++++
T Consensus 205 ~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 205 VVLDAGRVAQVGKPLE 220 (369)
T ss_pred EEEECCEEEEEcCHHH
Confidence 9999999999998764
No 43
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=221.53 Aligned_cols=147 Identities=23% Similarity=0.295 Sum_probs=125.1
Q ss_pred cceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 20 PQKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.++.+|||+|++. .+..-||.|.+.|+....+.. ..+ ...+++++++.+|+.+..+.
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~----------~~e------------~~~rv~~~l~~vgl~~~~~r 134 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP----------REE------------IEERVAEALELVGLEELLDR 134 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCC----------HHH------------HHHHHHHHHHHcCchhhccC
Confidence 4688999999964 456789999999987654321 111 11268999999999998876
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ ..|||||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++.|.|+|+++|+ .+.+..+||+
T Consensus 135 ~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~ 208 (235)
T COG1122 135 PP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADR 208 (235)
T ss_pred Cc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCE
Confidence 65 46999999999999999999999999999999999999999999999998767899998865 5689999999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|+++++|++.
T Consensus 209 v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 209 VVVLDDGKILADGDPA 224 (235)
T ss_pred EEEEECCEEeecCCHH
Confidence 9999999999999853
No 44
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=2.7e-28 Score=230.25 Aligned_cols=145 Identities=28% Similarity=0.373 Sum_probs=123.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||++|++.+++.+||+||+.+.+..++.. ..+. ..+++++++.+||.+..++.+
T Consensus 65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 122 (302)
T TIGR01188 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP----------KDEA------------EERAEELLELFELGEAADRPV 122 (302)
T ss_pred HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhHhCCch
Confidence 457999999999999999999998865443211 0000 114788999999998888776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+++|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. +++.++||+++
T Consensus 123 ~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~-~~~~~~~d~v~ 195 (302)
T TIGR01188 123 G-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYM-EEADKLCDRIA 195 (302)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999764 88999988765 58899999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 196 ~l~~G~i~~~g~~~ 209 (302)
T TIGR01188 196 IIDHGRIIAEGTPE 209 (302)
T ss_pred EEECCEEEEECCHH
Confidence 99999999988765
No 45
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=5e-28 Score=230.41 Aligned_cols=148 Identities=24% Similarity=0.250 Sum_probs=124.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++|++|+..+++.+||+||+.|+...++.. ..+. ..+++++++.+||.+..++.
T Consensus 40 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 97 (325)
T TIGR01187 40 HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP----------RAEI------------KPRVLEALRLVQLEEFADRK 97 (325)
T ss_pred HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----------HHHH------------HHHHHHHHHHcCCcchhcCC
Confidence 3567999999999999999999999875432110 0000 11477889999998877766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|+++|+. .++..+||++
T Consensus 98 ~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i 171 (325)
T TIGR01187 98 PH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRI 171 (325)
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 54 69999999999999999999999999999999999999999999999876688999998765 5889999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+++..|++++
T Consensus 172 ~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 172 AIMRKGKIAQIGTPEE 187 (325)
T ss_pred EEEECCEEEEEcCHHH
Confidence 9999999999998764
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.8e-28 Score=216.37 Aligned_cols=143 Identities=24% Similarity=0.299 Sum_probs=118.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|++||+.+.....+.. .... ..++.++++.+|+.+..++.+
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 128 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP----------KAEI------------RARVRELLELVGLEGLLNRYP 128 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhhhhcCh
Confidence 457999999999999999999998764322100 0000 013678899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|++ .++.++||+++
T Consensus 129 ~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~ 202 (213)
T cd03259 129 H-----ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIA 202 (213)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEE
Confidence 4 59999999999999999999999999999999999999999999999765588999988765 47889999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|++++.|
T Consensus 203 ~l~~G~i~~~g 213 (213)
T cd03259 203 VMNEGRIVQVG 213 (213)
T ss_pred EEECCEEEecC
Confidence 99999998765
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.4e-28 Score=220.28 Aligned_cols=147 Identities=23% Similarity=0.237 Sum_probs=121.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++...... ....+. ..++.++++.+||.+..++.+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 134 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTR---------LSEEEI------------REIVLEKLEAVGLRGAEDLYP 134 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccC---------CCHHHH------------HHHHHHHHHHcCCchhhcCCh
Confidence 46799999999999999999999886432110 000000 114778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|++ +++..+||+++
T Consensus 135 ~-----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~ 208 (235)
T cd03261 135 A-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIA 208 (235)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEE
Confidence 4 59999999999999999999999999999999999999999999999764578999988766 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 209 ~l~~G~i~~~g~~~ 222 (235)
T cd03261 209 VLYDGKIVAEGTPE 222 (235)
T ss_pred EEECCeEEEecCHH
Confidence 99999999988765
No 48
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=4.9e-28 Score=200.17 Aligned_cols=147 Identities=26% Similarity=0.288 Sum_probs=122.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.+|+|+|+..++|.+||.||+.-+.. + ...+++.+. ..++.++|+++.|.+.+|..
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~-k--------v~gl~~~qa------------~~~a~ellkrlrl~~~adr~ 138 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPC-R--------VLGLSKDQA------------LARAEKLLKRLRLKPYADRY 138 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhH-H--------HhCCCHHHH------------HHHHHHHHHHhccccccccC
Confidence 46789999999999999999999965421 1 111222221 12478899999999999876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.- .|||||+|||+|||||+.+|++|++||||++|||.-..++.++|++++. .|.|-++++|.. +.+...+.+|
T Consensus 139 pl-----hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev-~va~k~as~v 211 (242)
T COG4161 139 PL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEV-EVARKTASRV 211 (242)
T ss_pred ce-----ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeeh-hHHHhhhhhe
Confidence 54 5999999999999999999999999999999999999999999999986 599988888754 4777899999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
+.|.+|+|++.|+.+
T Consensus 212 vyme~g~ive~g~a~ 226 (242)
T COG4161 212 VYMENGHIVEQGDAS 226 (242)
T ss_pred EeeecCeeEeecchh
Confidence 999999999999876
No 49
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=8.5e-28 Score=229.61 Aligned_cols=147 Identities=29% Similarity=0.305 Sum_probs=124.3
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+||++|+..+++.+||.||+.+....++.. ..+. ..+++++++.++|.+..++.
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~ll~~~~L~~~~~~~ 169 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS----------TREI------------EAVIPSLLEFARLESKADAR 169 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhCCC
Confidence 3567999999999999999999998755433210 0000 11367789999999888887
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ +|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. +++.++||+|
T Consensus 170 ~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i 242 (340)
T PRK13536 170 VS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRL 242 (340)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEE
Confidence 75 5999999999999999999999999999999999999999999999976 489999998765 5899999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 243 ~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 243 CVLEAGRKIAEGRPHA 258 (340)
T ss_pred EEEECCEEEEEcCHHH
Confidence 9999999999998763
No 50
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=228.67 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=124.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||++|++.+++.+||.||+.+.....+.. ..+. ..++.++++.+||.+..++.+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~~~ 138 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTP----------KAEI------------KARVTELLELVGLSDKADRYP 138 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhhCCh
Confidence 467999999999999999999998875432210 0000 114778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+. +++.++||+++
T Consensus 139 ~-----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~ 212 (343)
T PRK11153 139 A-----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVA 212 (343)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999865688999988765 58889999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|++++.|+++..
T Consensus 213 ~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 213 VIDAGRLVEQGTVSEV 228 (343)
T ss_pred EEECCEEEEEcCHHHH
Confidence 9999999999987643
No 51
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=2.5e-27 Score=212.66 Aligned_cols=143 Identities=24% Similarity=0.288 Sum_probs=119.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+.....+.. ..+. ..+++++++.+|+.+..++.+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 128 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP----------KDEI------------DERVREVAELLQIEHLLDRKP 128 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCHHHHhCCh
Confidence 356999999999999999999998764322100 0000 113778899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++++.|.|||+++|++ .++.++||+++
T Consensus 129 ~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~ 202 (213)
T cd03301 129 K-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIA 202 (213)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 5 59999999999999999999999999999999999999999999999865588999998776 47888999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|++++.|
T Consensus 203 ~l~~g~~~~~g 213 (213)
T cd03301 203 VMNDGQIQQIG 213 (213)
T ss_pred EEECCEEEecC
Confidence 99999998765
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.1e-27 Score=217.01 Aligned_cols=150 Identities=23% Similarity=0.286 Sum_probs=121.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++....+...+ ....+. ..+++++++.+||.+..++.+
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 134 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSER------PPEAEI------------RAKVHELLKLVQLDWLADRYP 134 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhcccccc------CCHHHH------------HHHHHHHHHHcCChhhhhcCh
Confidence 45799999999999999999999886432211000 000000 113678899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||+++|++ +++.++||+++
T Consensus 135 ~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~ 208 (239)
T cd03296 135 A-----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVV 208 (239)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999865578999998876 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 209 ~l~~G~i~~~~~~~ 222 (239)
T cd03296 209 VMNKGRIEQVGTPD 222 (239)
T ss_pred EEECCeEEEecCHH
Confidence 99999999988765
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.8e-27 Score=213.40 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=120.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+....++.. .... ..+++++++.+||.+..++.+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 129 (220)
T cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGLELQGVP----------KAEA------------RERAEELLELVGLSGFENAYP 129 (220)
T ss_pred cCcEEEEecccccccCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCCc
Confidence 467999999999999999999998864332110 0000 014778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||+||+.+|+++||||||+|||+.++..+++.|++++++.|.|||+++|++ .++..+||+++
T Consensus 130 ~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 203 (220)
T cd03293 130 H-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVV 203 (220)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999998765578999988776 47888999999
Q ss_pred eec--CCeEEEecCCC
Q 044411 181 LMA--EGKILYHGPRK 194 (363)
Q Consensus 181 vL~--~G~iv~~G~~~ 194 (363)
+|+ +|+++..++.+
T Consensus 204 ~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 204 VLSARPGRIVAEVEVD 219 (220)
T ss_pred EEECCCCEEEEEEEec
Confidence 999 79999887753
No 54
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-27 Score=230.08 Aligned_cols=146 Identities=24% Similarity=0.269 Sum_probs=123.2
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|+..+++.+||+||+.++....+.. ..+. ..++.++++.+||.+..++.+.
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~----------~~~~------------~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGIN----------AEER------------REKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCChhhhcCcc
Confidence 57999999999999999999999875433210 0000 1147788999999887776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||+++|+. +++..+||++++
T Consensus 164 -----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~v 237 (400)
T PRK10070 164 -----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAI 237 (400)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEE
Confidence 69999999999999999999999999999999999999999999999765688999988765 588899999999
Q ss_pred ecCCeEEEecCCCC
Q 044411 182 MAEGKILYHGPRKV 195 (363)
Q Consensus 182 L~~G~iv~~G~~~~ 195 (363)
|++|+++..|++++
T Consensus 238 L~~G~i~~~g~~~~ 251 (400)
T PRK10070 238 MQNGEVVQVGTPDE 251 (400)
T ss_pred EECCEEEecCCHHH
Confidence 99999999988763
No 55
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=228.86 Aligned_cols=141 Identities=25% Similarity=0.391 Sum_probs=122.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..++|.+||+||+.|+.... . ..+++++++.+||.+..++.+
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---------------~-------------~~~~~~~l~~~gl~~~~~~~~ 126 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKS---------------M-------------VAQFDKIVALLGIEPLLDRYP 126 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhhh---------------h-------------HHHHHHHHHHcCCchhhhCCc
Confidence 567999999999999999999998753200 0 013778899999988777765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|+++|++ +++..+||+++
T Consensus 127 ~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~ 200 (352)
T PRK11144 127 G-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVV 200 (352)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999876588999988766 58899999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|+++..|++++
T Consensus 201 ~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 201 VLEQGKVKAFGPLEE 215 (352)
T ss_pred EEeCCEEEEecCHHH
Confidence 999999999998764
No 56
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.9e-27 Score=213.39 Aligned_cols=146 Identities=29% Similarity=0.329 Sum_probs=121.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+.....+.. ..+. ..+++++++.+||.+..++.+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 129 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVP----------GAER------------RERIDELLDFVGLLEAADRLV 129 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCHHHhhCCh
Confidence 457999999999999999999998864332110 0000 114778899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++.|.|||+++|+. +++..+||+++
T Consensus 130 ~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~ 203 (220)
T cd03265 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVA 203 (220)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999875578999988765 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 204 ~l~~G~i~~~~~~~ 217 (220)
T cd03265 204 IIDHGRIIAEGTPE 217 (220)
T ss_pred EEeCCEEEEeCChH
Confidence 99999999887654
No 57
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.7e-27 Score=208.86 Aligned_cols=146 Identities=25% Similarity=0.261 Sum_probs=123.0
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc-cc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC-AD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 97 (363)
.+.+-+||||+ .+-|..||++.|.-+.+..+.. .. .+++.++++.+||.+. .+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~----------~~--------------~~~i~~~L~~VgL~~~~l~ 136 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS----------KS--------------QQRIAELLDQVGLPPSFLD 136 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCcc----------HH--------------HHHHHHHHHHcCCCHHHHh
Confidence 56799999996 4789999999997665442211 00 1247889999999754 34
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+++.+|||||+||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++.+.|.|+++|+ ...+..+||
T Consensus 137 -----R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cd 210 (252)
T COG1124 137 -----RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCD 210 (252)
T ss_pred -----cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhh
Confidence 35567999999999999999999999999999999999999999999999999889999998865 568999999
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
||++|++|++++.++.+..
T Consensus 211 Ri~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 211 RIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred heeeeeCCeEEEeechhhh
Confidence 9999999999999998754
No 58
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=2.5e-27 Score=228.55 Aligned_cols=147 Identities=25% Similarity=0.314 Sum_probs=125.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++||+|++.++|.+||.||+.++....+.. ..+. ..++.++++.+||.+..++.++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~----------~~~~------------~~~a~e~le~vgL~~~~~~~~~ 163 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMP----------EAER------------RKRVDEQLELVGLAQWADKKPG 163 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCchhhcCChh
Confidence 57999999999999999999999875432211 0111 1247888999999988777665
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|.+++++.++|||+++|+. +++.++||++++
T Consensus 164 -----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~v 237 (382)
T TIGR03415 164 -----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAI 237 (382)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999876689999998765 588999999999
Q ss_pred ecCCeEEEecCCCCC
Q 044411 182 MAEGKILYHGPRKVC 196 (363)
Q Consensus 182 L~~G~iv~~G~~~~~ 196 (363)
|++|+++..|++++.
T Consensus 238 l~~G~iv~~g~~~ei 252 (382)
T TIGR03415 238 MEGGRIIQHGTPEEI 252 (382)
T ss_pred EECCEEEEecCHHHH
Confidence 999999999987643
No 59
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=2.6e-27 Score=223.65 Aligned_cols=145 Identities=30% Similarity=0.320 Sum_probs=121.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||++|++.+++.+||.||+.+.....+.. ..+. ..+++++++.++|.+..++.+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~ll~~~~l~~~~~~~~ 133 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----------TREI------------EAVIPSLLEFARLESKADVRV 133 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHCCChhHhcCch
Confidence 567999999999999999999998754322110 0000 013677899999998888776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|++ +++.++||+++
T Consensus 134 ~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~ 206 (303)
T TIGR01288 134 A-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLC 206 (303)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999976 488999998766 48889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 207 ~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 207 VLESGRKIAEGRPH 220 (303)
T ss_pred EEECCEEEEEcCHH
Confidence 99999999998765
No 60
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=2.9e-27 Score=211.47 Aligned_cols=138 Identities=27% Similarity=0.325 Sum_probs=117.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++...... . ..+++++++.+++.+..++.+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-------------~-------------~~~~~~~l~~~~l~~~~~~~~ 124 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGI-------------R-------------KKRIDEVLDVVGLKDSAKKKV 124 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcCC-------------c-------------HHHHHHHHHHcCCHHHHhhhH
Confidence 45799999999999999999999876432110 0 013677899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++..+||+++
T Consensus 125 ~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~ 197 (208)
T cd03268 125 K-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIG 197 (208)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEE
Confidence 4 5999999999999999999999999999999999999999999999876 588999988766 47888999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|++++.|
T Consensus 198 ~l~~g~i~~~g 208 (208)
T cd03268 198 IINKGKLIEEG 208 (208)
T ss_pred EEECCEEEecC
Confidence 99999998765
No 61
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4e-27 Score=211.09 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=117.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+...... . ..... ..++.++++.+|+.+..++.+
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~--------~~~~~-------------~~~~~~~l~~~~l~~~~~~~~ 126 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-K--------LTAED-------------RQAIEVALARVGLAGLEKRLP 126 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc-C--------ccHHH-------------HHHHHHHHHHcCCHHHHhCCc
Confidence 4679999999999999999999987532110 0 00000 114778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|.|||+++|++ .++.++||+++
T Consensus 127 ~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~ 200 (211)
T cd03298 127 G-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVV 200 (211)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEE
Confidence 4 69999999999999999999999999999999999999999999999765588999988765 57888999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|+++..|
T Consensus 201 ~l~~G~i~~~~ 211 (211)
T cd03298 201 FLDNGRIAAQG 211 (211)
T ss_pred EEECCEEeecC
Confidence 99999998654
No 62
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.9e-27 Score=214.25 Aligned_cols=147 Identities=18% Similarity=0.285 Sum_probs=121.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+..... .. ..... ..++.++++.+|+++..++.+
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~--------~~~~~-------------~~~~~~~l~~~~l~~~~~~~~ 127 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LK--------LNAAQ-------------REKLHAIARQMGIEDLLARLP 127 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhcccccc-cC--------CCHHH-------------HHHHHHHHHHcCcHHHHhCCc
Confidence 457999999999999999999998753210 00 00000 114788899999988877766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++++.+|+++||||||+|||+.++..+.+.|++++++.|.|+|+++|++ .++.++||+++
T Consensus 128 ~-----~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 201 (232)
T PRK10771 128 G-----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSL 201 (232)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999998765588999988776 47888999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|+++.
T Consensus 202 ~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 202 VVADGRIAWDGPTDE 216 (232)
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999887653
No 63
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=3.8e-27 Score=222.27 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=122.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||++|++.+++.+||.||+.+.+..++.. ..+. ..+++++++.+||.+..++.+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gl~~~~~~~~ 131 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK----------GQLL------------KQRVEEMIELVGLRPEQHKKI 131 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHCCCchHhcCch
Confidence 467999999999999999999999866443211 0000 113778899999998888776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++++ +.|||+++|+. +++.++||+++
T Consensus 132 ~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~ 203 (301)
T TIGR03522 132 G-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVI 203 (301)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999863 68999988765 58999999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|+++.
T Consensus 204 ~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 204 IINKGKIVADKKLDE 218 (301)
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999988763
No 64
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.9e-27 Score=217.66 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=121.3
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||.||+.+.....+.. .... ..++.++++.+||.+..++.++
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 159 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVP----------RAER------------EERAAEALELVGLEGWEHKYPD 159 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCHhHhhCCcc
Confidence 56999999999999999999998864322110 0000 1147788999999887777665
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+. +++.++||++++
T Consensus 160 -----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~ 233 (269)
T cd03294 160 -----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAI 233 (269)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEE
Confidence 59999999999999999999999999999999999999999999999765588999998765 478899999999
Q ss_pred ecCCeEEEecCCC
Q 044411 182 MAEGKILYHGPRK 194 (363)
Q Consensus 182 L~~G~iv~~G~~~ 194 (363)
|++|++++.|+++
T Consensus 234 l~~G~i~~~g~~~ 246 (269)
T cd03294 234 MKDGRLVQVGTPE 246 (269)
T ss_pred EECCEEEEeCCHH
Confidence 9999999888765
No 65
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=4.1e-27 Score=226.70 Aligned_cols=144 Identities=24% Similarity=0.397 Sum_probs=122.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.|+..... ..+. ..+++++++.+||.+..++.+
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------------~~~~------------~~~~~~~l~~~gL~~~~~~~~ 129 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------------PSER------------RISFERVIELLGIGHLLGRLP 129 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccC------------hhHH------------HHHHHHHHHHcCChhHhcCCh
Confidence 5679999999999999999999988643110 0000 114788899999998877766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|+|+++|++ +++..+||+++
T Consensus 130 ~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~ 203 (354)
T TIGR02142 130 G-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVV 203 (354)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999875588999998766 48889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 204 ~l~~G~i~~~g~~~ 217 (354)
T TIGR02142 204 VLEDGRVAAAGPIA 217 (354)
T ss_pred EEeCCEEEEECCHH
Confidence 99999999999876
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.3e-27 Score=213.44 Aligned_cols=146 Identities=23% Similarity=0.260 Sum_probs=121.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+....++.. .... ..++.++++.+||.+..++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 138 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP----------KAEI------------EERVLELLELVGLEDKADAYP 138 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHCCChhhhhcCh
Confidence 467999999999999999999998764322110 0000 013678899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||+++|++ +++.++||+++
T Consensus 139 ~-----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~ 212 (233)
T cd03258 139 A-----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVA 212 (233)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999765588999998876 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+.+
T Consensus 213 ~l~~G~i~~~~~~~ 226 (233)
T cd03258 213 VMEKGEVVEEGTVE 226 (233)
T ss_pred EEECCEEEEecCHH
Confidence 99999999888754
No 67
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=5.6e-27 Score=213.10 Aligned_cols=145 Identities=21% Similarity=0.261 Sum_probs=120.4
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.+.....+.. .... ..+++++++.+|+.+..++.++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 132 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLS----------KKER------------EEKLEELLEEFHITHLRKSKAS 132 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCChh
Confidence 46999999999999999999998764322110 0000 1136788999999887776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++.++||++++
T Consensus 133 -----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~ 205 (232)
T cd03218 133 -----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYI 205 (232)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 5999999999999999999999999999999999999999999999976 488999988776 488999999999
Q ss_pred ecCCeEEEecCCCC
Q 044411 182 MAEGKILYHGPRKV 195 (363)
Q Consensus 182 L~~G~iv~~G~~~~ 195 (363)
|++|++++.|+.+.
T Consensus 206 l~~G~i~~~~~~~~ 219 (232)
T cd03218 206 IYEGKVLAEGTPEE 219 (232)
T ss_pred EECCeEEEEeCHHH
Confidence 99999998887653
No 68
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=6.2e-27 Score=213.36 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=121.2
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.+..................... ...++.++++.+|+++..++.++
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREERE------------ARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHH------------HHHHHHHHHHHcCccchhhCChh
Confidence 469999999999999999999988653321000000000000000 01247788999999887776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||++|+.+|++++|||||+|||+.++..+++.|+++++ .|+|||+++|++ +++.++||++++
T Consensus 143 -----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~ 215 (236)
T cd03219 143 -----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTV 215 (236)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEE
Confidence 5999999999999999999999999999999999999999999999976 588999988776 478889999999
Q ss_pred ecCCeEEEecCCCC
Q 044411 182 MAEGKILYHGPRKV 195 (363)
Q Consensus 182 L~~G~iv~~G~~~~ 195 (363)
|++|+++..|+++.
T Consensus 216 l~~G~i~~~~~~~~ 229 (236)
T cd03219 216 LDQGRVIAEGTPDE 229 (236)
T ss_pred EeCCEEEeecCHHH
Confidence 99999998887653
No 69
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=4.5e-27 Score=211.49 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=114.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+.....+.. ..+. ..++.++++.+||.+..++.+
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 136 (216)
T TIGR00960 79 RRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVP----------PRDA------------NERVSAALEKVGLEGKAHALP 136 (216)
T ss_pred HHhceEEecCccccccccHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCCh
Confidence 457999999999999999999998865432110 0000 114778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +.+..+||+++
T Consensus 137 ~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~ 209 (216)
T TIGR00960 137 M-----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTL 209 (216)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999876 488999988766 47888999999
Q ss_pred eecCCeE
Q 044411 181 LMAEGKI 187 (363)
Q Consensus 181 vL~~G~i 187 (363)
+|++|++
T Consensus 210 ~l~~G~i 216 (216)
T TIGR00960 210 TLSRGRL 216 (216)
T ss_pred EEeCCcC
Confidence 9999974
No 70
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=8.1e-27 Score=226.62 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=124.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|+..+++.+||+||+.++...+.... ...... ...+++++++.+|+.+..++.+
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~-----~~~~~~-------------~~~~v~~~le~vgl~~~~~~~~ 137 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF-----DTWTET-------------DRAAVERAMERTGVAQFADRPV 137 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccc-----cCCCHH-------------HHHHHHHHHHHcCCchhhcCCh
Confidence 4679999999999999999999988643211000 000000 0124788999999998888766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .|||||||||.|||||+++|++|||||||+|||+.++..++++|+++++ .|.|||+++|+. +++.++||+++
T Consensus 138 ~-----~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii 210 (402)
T PRK09536 138 T-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELV 210 (402)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999986 588999988765 58889999999
Q ss_pred eecCCeEEEecCCCCCC
Q 044411 181 LMAEGKILYHGPRKVCP 197 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~~ 197 (363)
+|++|++++.|++++..
T Consensus 211 ~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 211 LLADGRVRAAGPPADVL 227 (402)
T ss_pred EEECCEEEEecCHHHHh
Confidence 99999999999877543
No 71
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.2e-27 Score=214.02 Aligned_cols=168 Identities=19% Similarity=0.227 Sum_probs=132.2
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.+.|+|+||++ .+-|.+||.+.+.-....+.... ... +..+++.++|+.+||.+...
T Consensus 87 G~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~~------------ea~~~a~~~L~~Vgi~~~~~- 145 (316)
T COG0444 87 GKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL--------SKK------------EAKERAIELLELVGIPDPER- 145 (316)
T ss_pred CceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch--------hhH------------HHHHHHHHHHHHcCCCCHHH-
Confidence 35799999995 57899999998876554321100 001 11235888999999986432
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+-+.++.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.++.|.++|++||+. .-+.++|||
T Consensus 146 -~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDr 223 (316)
T COG0444 146 -RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADR 223 (316)
T ss_pred -HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcce
Confidence 224578899999999999999999999999999999999999999999999999988899999988654 589999999
Q ss_pred eeeecCCeEEEecCCCCC---CCCCChHHHHHHhcC
Q 044411 179 IILMAEGKILYHGPRKVC---PDRKAVADFVLEVIS 211 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~---~~~~~~~~~~~~~~~ 211 (363)
|+||..|++++.|++++. |.+.....++..+..
T Consensus 224 i~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 224 VAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred EEEEECcEEEEeCCHHHHhcCCCChHHHHHHHhCcc
Confidence 999999999999998743 445555555544443
No 72
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=8.5e-27 Score=222.09 Aligned_cols=149 Identities=20% Similarity=0.177 Sum_probs=120.9
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++||+|++ .++|.+||.||+.+........ ....+. ..++.++++.+||. +..+
T Consensus 97 r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~--------~~~~~~------------~~~~~~~l~~vgl~~~~~~ 156 (331)
T PRK15079 97 RSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK--------LSRQEV------------KDRVKAMMLKVGLLPNLIN 156 (331)
T ss_pred hCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC--------CCHHHH------------HHHHHHHHHHcCCChHHhc
Confidence 46799999997 5889999999998864332100 001110 11477889999994 4455
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+. ++.|||||||||+||+||+.+|++||+||||+|||+.++..++++|+++.++.|.|+|+++|+. ..+.++||
T Consensus 157 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~d 230 (331)
T PRK15079 157 RY-----PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISD 230 (331)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCC
Confidence 44 4579999999999999999999999999999999999999999999999876688999988765 58888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
+|++|++|++++.|+++.
T Consensus 231 ri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 231 RVLVMYLGHAVELGTYDE 248 (331)
T ss_pred EEEEEECCEEEEEcCHHH
Confidence 999999999999998764
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=9.8e-27 Score=212.68 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=120.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+......... .......... ...++.++++.+||.+..++.+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~--~~~~~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTW--RSLFGLFPKE------------EKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhh--hhhcccCcHH------------HHHHHHHHHHHcCChhhhCCCc
Confidence 4579999999999999999999987532110000 0000000000 0124778899999987776655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++..+||+++
T Consensus 143 -----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~ 216 (241)
T cd03256 143 -----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216 (241)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999999765588999998776 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 217 ~l~~G~i~~~~~~~ 230 (241)
T cd03256 217 GLKDGRIVFDGPPA 230 (241)
T ss_pred EEECCEEEeecCHH
Confidence 99999999888764
No 74
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=1.7e-26 Score=207.30 Aligned_cols=145 Identities=19% Similarity=0.223 Sum_probs=119.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++|++|++.+++.+|+.||+.+...... .. .... ..+++++++.+|+.+..++.
T Consensus 68 ~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~-~~--------~~~~-------------~~~~~~~l~~~~l~~~~~~~ 125 (213)
T TIGR01277 68 YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL-KL--------NAEQ-------------QEKVVDAAQQVGIADYLDRL 125 (213)
T ss_pred hccceEEEeccCccCCCCcHHHHHHhHhhccC-Cc--------cHHH-------------HHHHHHHHHHcCcHHHhhCC
Confidence 35679999999999999999999987532110 00 0000 11367789999998777766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.+.|||+++|+. .++.++||++
T Consensus 126 ~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v 199 (213)
T TIGR01277 126 PE-----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQI 199 (213)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeE
Confidence 54 69999999999999999999999999999999999999999999998765578999988776 4778899999
Q ss_pred eeecCCeEEEecC
Q 044411 180 ILMAEGKILYHGP 192 (363)
Q Consensus 180 ~vL~~G~iv~~G~ 192 (363)
++|++|+++..|+
T Consensus 200 ~~l~~g~i~~~~~ 212 (213)
T TIGR01277 200 AVVSQGKIKVVSD 212 (213)
T ss_pred EEEECCeEEEecC
Confidence 9999999998875
No 75
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=1.1e-26 Score=209.25 Aligned_cols=142 Identities=24% Similarity=0.378 Sum_probs=118.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+....++.. ..+. ..++.++++.+|+.+..++.+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 134 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK----------GDEL------------TARLEELADRLGMEELLDRRV 134 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCHHHHhhhh
Confidence 467999999999999999999998754322110 0000 114778899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++..+||+++
T Consensus 135 ~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~ 207 (218)
T cd03266 135 G-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVV 207 (218)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEE
Confidence 5 5999999999999999999999999999999999999999999999975 488999998766 47888999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|++++.|
T Consensus 208 ~l~~G~i~~~~ 218 (218)
T cd03266 208 VLHRGRVVYEG 218 (218)
T ss_pred EEECCEEeecC
Confidence 99999998654
No 76
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=1.1e-26 Score=212.77 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=121.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.++......... ........+ ...++.++++.+||.+..++.+
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 143 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWR--SLLGRFSEE------------DKERALSALERVGLADKAYQRA 143 (243)
T ss_pred HhheEEEcCCCcccccccHHHHHhhcccccccchh--hhhccccHH------------HHHHHHHHHHHcCcHhhhcCCc
Confidence 45799999999999999999999875321100000 000000000 0124778899999987777655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+++|+. +.+.++||+++
T Consensus 144 -----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~ 217 (243)
T TIGR02315 144 -----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIV 217 (243)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 469999999999999999999999999999999999999999999998765578999988766 47888999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|+++.
T Consensus 218 ~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 218 GLKAGEIVFDGAPSE 232 (243)
T ss_pred EEECCEEEecCCHHH
Confidence 999999998887653
No 77
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.9e-26 Score=207.16 Aligned_cols=141 Identities=26% Similarity=0.395 Sum_probs=117.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+...... .... ..++.++++.+|+.+..++.+
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~------------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 129 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKR------------NRED------------RISVDELLDLLGLDHLLNRYP 129 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhCC------------HHHH------------HHHHHHHHHHcCCHhHhhcCc
Confidence 4579999999999999999999987542110 0000 013677899999987766655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||+++|+. +++..+||+++
T Consensus 130 ~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 203 (214)
T cd03297 130 A-----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIV 203 (214)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEE
Confidence 4 59999999999999999999999999999999999999999999999865578999988766 47888999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|+++..|
T Consensus 204 ~l~~G~i~~~g 214 (214)
T cd03297 204 VMEDGRLQYIG 214 (214)
T ss_pred EEECCEEEecC
Confidence 99999998765
No 78
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=4.3e-27 Score=197.82 Aligned_cols=148 Identities=24% Similarity=0.249 Sum_probs=123.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
|...++|+|+.++++.|||.||+.-+..- .+...+.+ +.++++.+|..+|+.+..+...
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvh---------VLg~~k~e------------a~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVH---------VLGVSKAE------------AIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchH---------hhcCCHHH------------HHHHHHHHHHHhCchhhhhcCc
Confidence 34589999999999999999999654210 11111111 2235888999999999887654
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
..|||||+||++|||||+.+|+++|+|||||+|||.-.-++++.++++|++ |+|.+++|| .+..+.+...+|+
T Consensus 151 -----~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTH-EM~FAR~Vss~v~ 223 (256)
T COG4598 151 -----AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTH-EMGFARDVSSHVI 223 (256)
T ss_pred -----cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEee-ehhHHHhhhhheE
Confidence 469999999999999999999999999999999999999999999999974 899998886 4568888999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|.+-..|+|+..
T Consensus 224 fLh~G~iEE~G~P~qv 239 (256)
T COG4598 224 FLHQGKIEEEGPPEQV 239 (256)
T ss_pred EeecceecccCChHHH
Confidence 9999999999998743
No 79
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-26 Score=216.95 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=118.6
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc--cccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD--ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~ 97 (363)
++.+|||+|++. .+...||+||+.|+....+. ...+. ..++.++++.+||. +..+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gL~~~~~~~ 139 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL----------SEEEI------------ENRVKRAMNIVGLDYEDYKD 139 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCC----------CHHHH------------HHHHHHHHHHcCCCchhhcc
Confidence 467999999863 33458999999886432211 01111 12478889999997 5566
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ +.||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||+++|+. +++..+||
T Consensus 140 ~~~-----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d 213 (287)
T PRK13637 140 KSP-----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLAD 213 (287)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCC
Confidence 554 569999999999999999999999999999999999999999999999875588999998765 57888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
+|++|++|++++.|++++
T Consensus 214 rv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 214 RIIVMNKGKCELQGTPRE 231 (287)
T ss_pred EEEEEECCEEEEECCHHH
Confidence 999999999999987653
No 80
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=212.27 Aligned_cols=146 Identities=27% Similarity=0.307 Sum_probs=120.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc--cccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI--CADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~ 98 (363)
++.++|++|++.+++.+||+||+.+.....+.. .... ..++.++++.+|+.+ ..++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~l~l~~~~~~~~ 131 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----------KEKI------------RERADELLALVGLDPAEFADR 131 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCCcHHHHhc
Confidence 457999999999999999999998764322110 0000 114778899999985 5565
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ .++..+||+
T Consensus 132 ~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~ 205 (242)
T cd03295 132 YP-----HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADR 205 (242)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCE
Confidence 54 469999999999999999999999999999999999999999999999765588999998876 478899999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+++
T Consensus 206 i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 206 IAIMKNGEIVQVGTPD 221 (242)
T ss_pred EEEEECCEEEEecCHH
Confidence 9999999999887754
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=1.9e-26 Score=208.97 Aligned_cols=146 Identities=18% Similarity=0.245 Sum_probs=118.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.++ .+||+||+.++....+... ..+. ..++.++++.+|+.+..+..+
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 137 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKL---------KEEL------------DERVEEALRKAALWDEVKDRL 137 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCc---------HHHH------------HHHHHHHHHHcCCChHHhccC
Confidence 45799999998888 7999999988643321000 0000 114778899999987666543
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++++ . .|||+++|++ +++.++||+++
T Consensus 138 ~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~ 211 (227)
T cd03260 138 H---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTA 211 (227)
T ss_pred C---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEE
Confidence 0 256999999999999999999999999999999999999999999999976 3 7899988766 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 212 ~l~~G~i~~~g~~~ 225 (227)
T cd03260 212 FLLNGRLVEFGPTE 225 (227)
T ss_pred EEeCCEEEEecCcc
Confidence 99999999988764
No 82
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=1.2e-26 Score=209.01 Aligned_cols=138 Identities=25% Similarity=0.343 Sum_probs=113.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+....++.. .... ..++.++++.+||.+..++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 138 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVP----------KKER------------RERAEELLERVGLGDRLNHYP 138 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC----------HHHH------------HHHHHHHHHHcCCchhhhcCh
Confidence 357999999999999999999998865432110 0000 114778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++. ++. +||+++
T Consensus 139 ~-----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~ 211 (218)
T cd03255 139 S-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRII 211 (218)
T ss_pred h-----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEE
Confidence 4 599999999999999999999999999999999999999999999997645889999988764 565 999999
Q ss_pred eecCCeE
Q 044411 181 LMAEGKI 187 (363)
Q Consensus 181 vL~~G~i 187 (363)
+|++|++
T Consensus 212 ~l~~G~i 218 (218)
T cd03255 212 ELRDGKI 218 (218)
T ss_pred EeeCCcC
Confidence 9999974
No 83
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=3.7e-26 Score=207.02 Aligned_cols=147 Identities=35% Similarity=0.553 Sum_probs=118.3
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHH-HHHHcCCcccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDY-NLKILGLDICADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~ 98 (363)
.++.++|++|++.+++.+||+||+.++......... ..... ..++++ .++.+++.+..++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~-------~~~~~------------~~~~~~~~l~~~~l~~~~~~ 139 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS-------SDAIR------------KKRVEDVLLRDLALTRIGGN 139 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc-------chHHH------------HHHHHHHHHHhhcchhhhcc
Confidence 356799999999999999999999986543211000 00000 012444 7888898877666
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ +.|||||+|||+||++|+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|+++|++..++.++||+
T Consensus 140 ~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 140 LV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred cc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCE
Confidence 55 469999999999999999999999999999999999999999999998764 789999998875589999999
Q ss_pred eeeecCCeEEEec
Q 044411 179 IILMAEGKILYHG 191 (363)
Q Consensus 179 v~vL~~G~iv~~G 191 (363)
+++|++|++++.|
T Consensus 214 i~~l~~G~i~~~g 226 (226)
T cd03234 214 ILLLSSGEIVYSG 226 (226)
T ss_pred EEEEeCCEEEecC
Confidence 9999999998765
No 84
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=2.2e-26 Score=213.88 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=121.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+||.||+.+....... ...... ..++.++++.+||.+..++.+
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~gl~~~~~~~~ 141 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ---------LPAPLL------------HSTVMMKLEAVGLRGAAKLMP 141 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccC---------CCHHHH------------HHHHHHHHHHcCChhhhhCCh
Confidence 45699999999999999999999875422100 000000 113677899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+. .++.++||+++
T Consensus 142 ~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~ 215 (269)
T PRK11831 142 S-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAY 215 (269)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEE
Confidence 4 59999999999999999999999999999999999999999999999765578999988765 57889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 216 ~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 216 IVADKKIVAHGSAQA 230 (269)
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999988654
No 85
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.6e-26 Score=208.03 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=117.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.+.....+.. ..+. ..++.++++.+||.+..++.++
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKK----------PAEI------------NSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCchhhhCChh
Confidence 56999999999999999999998864322100 0000 1147788999999887776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++. ++.. +|++++
T Consensus 145 -----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 -----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 599999999999999999999999999999999999999999999987645889999988764 5554 579999
Q ss_pred ecCCeEEEecCC
Q 044411 182 MAEGKILYHGPR 193 (363)
Q Consensus 182 L~~G~iv~~G~~ 193 (363)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988763
No 86
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=2.7e-26 Score=208.44 Aligned_cols=145 Identities=23% Similarity=0.250 Sum_probs=118.4
Q ss_pred EEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccCC
Q 044411 24 SAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGDA 103 (363)
Q Consensus 24 ~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 103 (363)
.+|++|++.+++.+||.||+.+........ ....+. ..++.++++.+||.+..++.++
T Consensus 56 ~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~~-- 113 (230)
T TIGR01184 56 RMVVFQNYSLLPWLTVRENIALAVDRVLPD--------LSKSER------------RAIVEEHIALVGLTEAADKRPG-- 113 (230)
T ss_pred heEEecCcccCCCCCHHHHHHHHHHhcccC--------CCHHHH------------HHHHHHHHHHcCCHHHHcCChh--
Confidence 489999999999999999998753210000 000000 1136788999999887776654
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeec
Q 044411 104 IRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~ 183 (363)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++.++||++++|+
T Consensus 114 ---~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 189 (230)
T TIGR01184 114 ---QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLT 189 (230)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEe
Confidence 59999999999999999999999999999999999999999999998765588999998766 47889999999999
Q ss_pred CCeEEEecCCC
Q 044411 184 EGKILYHGPRK 194 (363)
Q Consensus 184 ~G~iv~~G~~~ 194 (363)
+|+++..|+..
T Consensus 190 ~G~i~~~~~~~ 200 (230)
T TIGR01184 190 NGPAANIGQIL 200 (230)
T ss_pred CCcEecccCce
Confidence 99999888654
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=211.52 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=118.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+.... . .. .++.++++.+||.+..+..+
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~-----------~---~~--------------~~~~~~l~~~gl~~~~~~~~ 131 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLKG-----------Q---WR--------------DAALQALAAVGLADRANEWP 131 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhcccc-----------h---HH--------------HHHHHHHHHcCChhHhcCCh
Confidence 46799999999999999999999874210 0 00 13677899999988776655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|||+++|+. ..+..+||+++
T Consensus 132 ~-----~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~ 205 (257)
T PRK11247 132 A-----ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVL 205 (257)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 69999999999999999999999999999999999999999999998765688999988766 47788999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+.+
T Consensus 206 ~l~~G~i~~~~~~~ 219 (257)
T PRK11247 206 LIEEGKIGLDLTVD 219 (257)
T ss_pred EEECCEEEeecccc
Confidence 99999999888754
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.8e-26 Score=205.47 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=117.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+||+||+.+....++.. ..+. ..++.++++.+|+.+..++.+
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 126 (210)
T cd03269 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK----------KEEA------------RRRIDEWLERLELSEYANKRV 126 (210)
T ss_pred HccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC----------hHHH------------HHHHHHHHHHcCChHHHhCcH
Confidence 567999999999999999999998764332110 0000 113778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|||+++|++ +++.++||+++
T Consensus 127 ~-----~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~ 199 (210)
T cd03269 127 E-----ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVL 199 (210)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEE
Confidence 4 5999999999999999999999999999999999999999999999876 478999988766 47888999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|++++.|
T Consensus 200 ~l~~g~i~~~~ 210 (210)
T cd03269 200 LLNKGRAVLYG 210 (210)
T ss_pred EEeCCEEEecC
Confidence 99999998754
No 89
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-26 Score=216.27 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=117.8
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.+|||+|++ .++ ..||.||+.|+....+.. ..+. ..+++++++.+||. +..+
T Consensus 84 ~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~ 140 (290)
T PRK13634 84 RKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVS----------EEDA------------KQKAREMIELVGLPEELLA 140 (290)
T ss_pred HhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHCCCChhhhh
Confidence 45799999986 344 579999998864322110 0010 11478889999997 5566
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++.|.|||+++|+. +++.++||
T Consensus 141 ~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~d 214 (290)
T PRK13634 141 RSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYAD 214 (290)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCC
Confidence 655 469999999999999999999999999999999999999999999999875688999998765 58889999
Q ss_pred ceeeecCCeEEEecCCC
Q 044411 178 DIILMAEGKILYHGPRK 194 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~ 194 (363)
||++|++|++++.|+++
T Consensus 215 rv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 215 QIVVMHKGTVFLQGTPR 231 (290)
T ss_pred EEEEEECCEEEEECCHH
Confidence 99999999999998765
No 90
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-26 Score=216.92 Aligned_cols=146 Identities=23% Similarity=0.329 Sum_probs=118.6
Q ss_pred ceeEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 21 QKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
++.+|||+|++ ..+...||+||+.|+....+.. ..+. ..++.++++.+||. +..++
T Consensus 104 ~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 104 RRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------KEEA------------KKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred HhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------HHHH------------HHHHHHHHHHcCCChhhhhC
Confidence 56799999985 3344579999998865332110 0010 12478889999996 56666
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. +.+.++||+
T Consensus 162 ~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~adr 234 (305)
T PRK13651 162 SP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDL-DNVLEWTKR 234 (305)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCH-HHHHHhCCE
Confidence 55 46999999999999999999999999999999999999999999999975 588999988765 578899999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
|++|++|++++.|++++
T Consensus 235 v~vl~~G~i~~~g~~~~ 251 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYD 251 (305)
T ss_pred EEEEECCEEEEECCHHH
Confidence 99999999999988764
No 91
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=3.6e-26 Score=217.83 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=121.4
Q ss_pred eeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 22 KLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+.++||+|++ .+.|.+|+.+++......... ....+. ..++.++++.+||.+..+.
T Consensus 97 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~---------~~~~~~------------~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG---------MSKAEA------------FEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred CCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcC---------CCHHHH------------HHHHHHHHHHcCCCChHHH-
Confidence 4799999997 688999999999775433210 000110 1247788999999753322
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
. +.++++|||||||||+||+||+.+|++||+||||+|||+.++..++++|++++++.|.|+|+++|+. ..+.++||++
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEE
Confidence 1 2456789999999999999999999999999999999999999999999999876689999988765 4788899999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|++++.|++++.
T Consensus 233 ~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 233 LVMYAGRTMEYGNARDV 249 (330)
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999987643
No 92
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=4.9e-26 Score=205.74 Aligned_cols=140 Identities=24% Similarity=0.262 Sum_probs=119.3
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+|++||+.+.....+. . ..++.++++.+|+++..++.++
T Consensus 70 ~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~----------~----------------~~~~~~~l~~~~l~~~~~~~~~ 123 (223)
T TIGR03740 70 HKIGSLIESPPLYENLTARENLKVHTTLLGL----------P----------------DSRIDEVLNIVDLTNTGKKKAK 123 (223)
T ss_pred ccEEEEcCCCCccccCCHHHHHHHHHHHcCC----------C----------------HHHHHHHHHHcCCcHHHhhhHh
Confidence 4699999999999999999999875432210 0 0136778899999887776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.||||||||++||++++.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++|++. ++.++||++++
T Consensus 124 -----~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 196 (223)
T TIGR03740 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGI 196 (223)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEE
Confidence 5999999999999999999999999999999999999999999999975 4789999988764 78889999999
Q ss_pred ecCCeEEEecCCC
Q 044411 182 MAEGKILYHGPRK 194 (363)
Q Consensus 182 L~~G~iv~~G~~~ 194 (363)
|++|++++.|++.
T Consensus 197 l~~g~i~~~~~~~ 209 (223)
T TIGR03740 197 ISEGVLGYQGKIN 209 (223)
T ss_pred EeCCEEEEecChh
Confidence 9999999998865
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=3e-26 Score=210.67 Aligned_cols=146 Identities=23% Similarity=0.273 Sum_probs=119.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++...... . ..... ..++.++++.+||.+..++.+
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~--------~~~~~------------~~~~~~~l~~~gl~~~~~~~~ 142 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG-E--------PKEEA------------TARARELLAKVGLAGKETSYP 142 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcC-C--------CHHHH------------HHHHHHHHHHcCCcchhhCCh
Confidence 45799999999999999999999875321100 0 00000 113677899999987776655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||+++
T Consensus 143 -----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~ 215 (250)
T PRK11264 143 -----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAI 215 (250)
T ss_pred -----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEE
Confidence 46999999999999999999999999999999999999999999999976 488999988765 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 216 ~l~~G~i~~~~~~~ 229 (250)
T PRK11264 216 FMDQGRIVEQGPAK 229 (250)
T ss_pred EEECCEEEEeCCHH
Confidence 99999999988765
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.2e-26 Score=205.17 Aligned_cols=141 Identities=26% Similarity=0.453 Sum_probs=116.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+.....+.. ..+. ..+++++++.+||.+..++.+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 128 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP----------SKEV------------KARVDEVLELVNLGDRAKKKI 128 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCC----------HHHH------------HHHHHHHHHHCCCHHHHhCch
Confidence 567999999999999999999998764332110 0000 113778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ +.+.++||+++
T Consensus 129 ~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~ 200 (211)
T cd03264 129 G-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVA 200 (211)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999975 47899888765 47788999999
Q ss_pred eecCCeEEEec
Q 044411 181 LMAEGKILYHG 191 (363)
Q Consensus 181 vL~~G~iv~~G 191 (363)
+|++|++++.|
T Consensus 201 ~l~~g~i~~~g 211 (211)
T cd03264 201 VLNKGKLVFEG 211 (211)
T ss_pred EEECCEEEecC
Confidence 99999998764
No 95
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.8e-26 Score=216.69 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=120.9
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-ccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 97 (363)
++.++||+|++ .+.|.+||.+++......... ....+. ..++.++++.+||.+ ..+
T Consensus 91 r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~gL~~~~~~ 149 (327)
T PRK11308 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS---------LSAAER------------REKALAMMAKVGLRPEHYD 149 (327)
T ss_pred hCCEEEEEcCchhhcCCccCHHHHHHHHHHHccC---------CCHHHH------------HHHHHHHHHHCCCChHHhc
Confidence 45799999997 588999999999775433210 001111 124788999999963 455
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+. ++.|||||||||+||+||+.+|++||+||||+|||+.++..|+++|+++.++.|.|+|++||+. ..+.++||
T Consensus 150 ~~-----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~ad 223 (327)
T PRK11308 150 RY-----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIAD 223 (327)
T ss_pred CC-----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCC
Confidence 54 4579999999999999999999999999999999999999999999999876689999988765 57888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
+|++|++|++++.|+.++
T Consensus 224 rv~vm~~G~ive~g~~~~ 241 (327)
T PRK11308 224 EVMVMYLGRCVEKGTKEQ 241 (327)
T ss_pred EEEEEECCEEEEECCHHH
Confidence 999999999999998764
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=2.6e-26 Score=204.86 Aligned_cols=135 Identities=24% Similarity=0.252 Sum_probs=111.8
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .++.+||.||+.++..... .. ..++.++++.+||.+..++.
T Consensus 70 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~-------------~~-------------~~~~~~~l~~~~l~~~~~~~ 123 (205)
T cd03226 70 RKSIGYVMQDVDYQLFTDSVREELLLGLKELD-------------AG-------------NEQAETVLKDLDLYALKERH 123 (205)
T ss_pred hcceEEEecChhhhhhhccHHHHHhhhhhhcC-------------cc-------------HHHHHHHHHHcCCchhcCCC
Confidence 457999999864 3456899999987532110 00 01377889999998877776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||++
T Consensus 124 ~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i 196 (205)
T cd03226 124 PL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRV 196 (205)
T ss_pred ch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEE
Confidence 64 5999999999999999999999999999999999999999999999976 488999998766 4788899999
Q ss_pred eeecCCeEE
Q 044411 180 ILMAEGKIL 188 (363)
Q Consensus 180 ~vL~~G~iv 188 (363)
++|++|+++
T Consensus 197 ~~l~~G~iv 205 (205)
T cd03226 197 LLLANGAIV 205 (205)
T ss_pred EEEECCEEC
Confidence 999999874
No 97
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=3.3e-26 Score=206.43 Aligned_cols=144 Identities=28% Similarity=0.415 Sum_probs=119.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+.....+.. ..+. ..+++++++.+||.+..++.+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLP----------KSEI------------KEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCHHHHhChh
Confidence 456999999999999999999998764332110 0000 113778899999988777765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.++||+++
T Consensus 132 ~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~ 203 (220)
T cd03263 132 R-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIA 203 (220)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEE
Confidence 4 5999999999999999999999999999999999999999999999874 489999887764 7888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 204 ~l~~g~i~~~~~~~ 217 (220)
T cd03263 204 IMSDGKLRCIGSPQ 217 (220)
T ss_pred EEECCEEEecCCHH
Confidence 99999999888754
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.8e-26 Score=214.17 Aligned_cols=145 Identities=18% Similarity=0.265 Sum_probs=119.3
Q ss_pred ceeEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++ ..++.+||.||+.|+....+. ...+. .+++.++++.+||.+..+..
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gL~~~~~~~ 137 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGI----------PHEEM------------KERVNEALELVGMQDFKERE 137 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCC----------CHHHH------------HHHHHHHHHHCCCHhHhhCC
Confidence 45799999997 467889999999886432211 00010 11478889999999877776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+.. ++ ..||++
T Consensus 138 ~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri 210 (279)
T PRK13650 138 PA-----RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRV 210 (279)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEE
Confidence 54 599999999999999999999999999999999999999999999998755899999998764 55 589999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|+++..|+++
T Consensus 211 ~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 211 LVMKNGQVESTSTPR 225 (279)
T ss_pred EEEECCEEEEECCHH
Confidence 999999999988765
No 99
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=4.3e-26 Score=208.38 Aligned_cols=146 Identities=24% Similarity=0.296 Sum_probs=120.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhh-ccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYC-QGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++.+++.+||.||+.++... .+. ...+. ..++.++++.+||++..++.
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gl~~~~~~~ 133 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA----------SKEEA------------EKQARELLAKVGLAERAHHY 133 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCC----------CHHHH------------HHHHHHHHHHcCChHHHhcC
Confidence 45799999999999999999999875321 110 00000 11477889999998777766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+. +++..+||++
T Consensus 134 ~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i 206 (240)
T PRK09493 134 PS-----ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRL 206 (240)
T ss_pred hh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999875 488999998876 4788899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 207 ~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 207 IFIDKGRIAEDGDPQV 222 (240)
T ss_pred EEEECCEEEeeCCHHH
Confidence 9999999999887653
No 100
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.1e-26 Score=212.54 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=118.6
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .++..||.||+.|+....+. ...+. ..++.++++.+||.+..++.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~L~~~~~~~ 135 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL----------DKDEV------------ERRVEEALKAVRMWDFRDKP 135 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCC----------CHHHH------------HHHHHHHHHHCCCHHHhcCC
Confidence 456999999863 45678999999876432110 00000 11477889999998877776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. +.+.++||++
T Consensus 136 ~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~-~~~~~~~d~i 208 (274)
T PRK13647 136 PY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDV-DLAAEWADQV 208 (274)
T ss_pred hh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEE
Confidence 64 59999999999999999999999999999999999999999999999864 88999998765 4788899999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 209 ~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 209 IVLKEGRVLAEGDKS 223 (274)
T ss_pred EEEECCEEEEECCHH
Confidence 999999999998865
No 101
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.7e-26 Score=215.71 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=119.5
Q ss_pred eeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 22 KLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+.++||+|++ .+.|.+||.+++......... ....+. ..++.++++.+||.+..+.
T Consensus 89 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~---------~~~~~~------------~~~~~~~L~~~gL~~~~~~- 146 (326)
T PRK11022 89 AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG---------GNKKTR------------RQRAIDLLNQVGIPDPASR- 146 (326)
T ss_pred CCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC---------CCHHHH------------HHHHHHHHHHCCCCChHHH-
Confidence 3699999997 478999999988765432210 001111 1247889999999752211
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
-+.++++|||||||||+||+||+.+|++||+||||+|||+.++..++++|++++++.|.|+|++||+. ..+..+||+|
T Consensus 147 -l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri 224 (326)
T PRK11022 147 -LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKI 224 (326)
T ss_pred -HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 12345679999999999999999999999999999999999999999999999876689999998765 4788899999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|++++.|++++.
T Consensus 225 ~vm~~G~ive~g~~~~~ 241 (326)
T PRK11022 225 IVMYAGQVVETGKAHDI 241 (326)
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999987643
No 102
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=5e-26 Score=210.69 Aligned_cols=156 Identities=18% Similarity=0.260 Sum_probs=122.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+...... ... .......... ...++.++++.+|+.+..++.+
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~-~~~~~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGST-PFW-RTCFSWFTRE------------QKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccc-cch-hhhcccccHH------------HHHHHHHHHHHcCCHHHHhCCc
Confidence 4569999999999999999999987532100 000 0000000000 0124788999999987777765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +.+..+||+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999865588999998776 47889999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|++++.|+++..
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999987654
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=6.4e-26 Score=205.52 Aligned_cols=145 Identities=26% Similarity=0.240 Sum_probs=114.0
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++|++|++ .+++.+||+||+.+......... ..... ...+.++++.+++. +..+
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~---------~~~~~-----------~~~~~~~l~~~~l~~~~~~ 140 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS---------KKEAR-----------KEAVLLLLVGVGLPEEVLN 140 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCc---------HHHHH-----------HHHHHHHHHHCCCChhHhh
Confidence 46799999998 46778999999987643221100 00000 00124678889995 5566
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +.+..+||
T Consensus 141 ~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d 214 (228)
T cd03257 141 RYPH-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIAD 214 (228)
T ss_pred CCch-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcC
Confidence 5554 59999999999999999999999999999999999999999999999865478999998776 47788999
Q ss_pred ceeeecCCeEEEec
Q 044411 178 DIILMAEGKILYHG 191 (363)
Q Consensus 178 ~v~vL~~G~iv~~G 191 (363)
++++|++|+++..|
T Consensus 215 ~i~~l~~G~i~~~g 228 (228)
T cd03257 215 RVAVMYAGKIVEEG 228 (228)
T ss_pred eEEEEeCCEEEecC
Confidence 99999999998654
No 104
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.4e-26 Score=207.15 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=121.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+.....+.. ..+. ..++.++++.+||.+..++.+
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 127 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD----------KKEI------------ERKVLEIAEMLGIDHLLNRKP 127 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhHHhcCc
Confidence 467999999999999999999998764322100 0000 013677899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++.+.|.|+|+++|++ .++.++||+++
T Consensus 128 ~-----~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~ 201 (235)
T cd03299 128 E-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVA 201 (235)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999998765588999998876 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+.+
T Consensus 202 ~l~~G~i~~~~~~~ 215 (235)
T cd03299 202 IMLNGKLIQVGKPE 215 (235)
T ss_pred EEECCEEEEecCHH
Confidence 99999999888754
No 105
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=6.2e-26 Score=204.73 Aligned_cols=138 Identities=18% Similarity=0.282 Sum_probs=113.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.+........ ..+. ..++.++++.+|+.+..++.++
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKS----------VKEA------------KERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCChh
Confidence 56999999999999999999998864322100 0000 1136788999999877776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|||+++|++. .+ ..+|++++
T Consensus 141 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 -----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 599999999999999999999999999999999999999999999997655789999988764 55 45899999
Q ss_pred ecCCeEE
Q 044411 182 MAEGKIL 188 (363)
Q Consensus 182 L~~G~iv 188 (363)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999875
No 106
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=3.6e-26 Score=206.39 Aligned_cols=143 Identities=20% Similarity=0.326 Sum_probs=116.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-CCccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-GLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ 99 (363)
++.++|++|++.+++.+|++||+.+...... . ... ..++.++++.+ ++.+..++.
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~-----------~~~------------~~~~~~~l~~~~~l~~~~~~~ 129 (222)
T cd03224 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARR-R-----------AKR------------KARLERVYELFPRLKERRKQL 129 (222)
T ss_pred hcCeEEeccccccCCCCcHHHHHHHHhhhcC-c-----------hhH------------HHHHHHHHHHHHhhhhhhhCc
Confidence 4569999999999999999999988643221 0 000 01255667777 466666665
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++|++ .++.++||++
T Consensus 130 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i 202 (222)
T cd03224 130 A-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRA 202 (222)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEE
Confidence 5 45999999999999999999999999999999999999999999999976 578999988765 4788999999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|+++..|+++
T Consensus 203 ~~l~~G~i~~~~~~~ 217 (222)
T cd03224 203 YVLERGRVVLEGTAA 217 (222)
T ss_pred EEeeCCeEEEeCCHH
Confidence 999999999887653
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.7e-26 Score=208.29 Aligned_cols=147 Identities=18% Similarity=0.299 Sum_probs=120.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+....... ....+. ..+++++++.+|+.+..++.+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 135 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD---------LSAEQR------------EDRANELMEEFHIEHLRDSMG 135 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccc---------cCHHHH------------HHHHHHHHHHcCCHHHhhcch
Confidence 45799999999999999999999875422110 000000 114778899999987766655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.++++++ .|.|+|+++|++ .++.++||+++
T Consensus 136 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~ 208 (241)
T PRK10895 136 -----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAY 208 (241)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEE
Confidence 46999999999999999999999999999999999999999999999875 488999998766 47889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 209 ~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 209 IVSQGHLIAHGTPTE 223 (241)
T ss_pred EEeCCeEEeeCCHHH
Confidence 999999999887653
No 108
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=6.4e-26 Score=222.70 Aligned_cols=161 Identities=24% Similarity=0.285 Sum_probs=130.2
Q ss_pred ceeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.+.|+|+||++. +-|.+||.+.+.=....+.... ..+ ...++.++|+.+||.+....
T Consensus 90 g~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~---------~~e------------a~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS---------RAE------------ARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred cccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------HHH------------HHHHHHHHHHHcCCCChhhh
Confidence 367999999953 5577999988876554442111 111 12358889999999887654
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+.+++.|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++.|+++|++||++ .-+.++|||
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCe
Confidence 4678999999999999999999999999999999999999999999999999988999999988755 588999999
Q ss_pred eeeecCCeEEEecCCCC---CCCCCChHHHH
Q 044411 179 IILMAEGKILYHGPRKV---CPDRKAVADFV 206 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~---~~~~~~~~~~~ 206 (363)
|+||.+|++++.|++++ .|.+......+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred EEEEECCEEEEecCHHHHHhccCCcccHHHH
Confidence 99999999999999873 34444444443
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-25 Score=207.46 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=118.7
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||.||+.+.....+.. ..+. ..++.++++.+||.+..++.++
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gl~~~~~~~~~ 127 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE----------KMQR------------LEIAHQMLKKVGLEGAEKRYIW 127 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhHhhCChh
Confidence 45899999999999999999998764322100 0000 1147788999999877776554
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++..+||++++
T Consensus 128 -----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~ 201 (255)
T PRK11248 128 -----QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVL 201 (255)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999998654588999988766 488899999999
Q ss_pred ec--CCeEEEecCCC
Q 044411 182 MA--EGKILYHGPRK 194 (363)
Q Consensus 182 L~--~G~iv~~G~~~ 194 (363)
|+ +|+++..++.+
T Consensus 202 l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 202 LSPGPGRVVERLPLN 216 (255)
T ss_pred EeCCCcEEEEEecCC
Confidence 98 59999887653
No 110
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.1e-26 Score=212.77 Aligned_cols=145 Identities=20% Similarity=0.277 Sum_probs=117.5
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.+|||+|++ .+++ .||.||+.|+....+.. ..+. ..++.++++.+||. +..+
T Consensus 83 ~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~L~~~~~~ 139 (288)
T PRK13643 83 RKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIP----------KEKA------------EKIAAEKLEMVGLADEFWE 139 (288)
T ss_pred HhhEEEEecCcchhccc-chHHHHHHhHHHHcCCC----------HHHH------------HHHHHHHHHHcCCChhhcc
Confidence 46799999986 4554 69999999875332110 0111 11477889999996 4556
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++..+||
T Consensus 140 ~~~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~d 212 (288)
T PRK13643 140 KSP-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYAD 212 (288)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCC
Confidence 554 56999999999999999999999999999999999999999999999976 488999998765 57888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
+|++|++|++++.|++++
T Consensus 213 ri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 213 YVYLLEKGHIISCGTPSD 230 (288)
T ss_pred EEEEEECCEEEEECCHHH
Confidence 999999999999998753
No 111
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=8.4e-26 Score=206.00 Aligned_cols=144 Identities=23% Similarity=0.292 Sum_probs=118.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+|+.||+.+....++.. .... ..++.++++.+||.+..++.++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gl~~~~~~~~~ 131 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----------RAEA------------RERIAALLARLGLAERADDKVR 131 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCChhhhcCChh
Confidence 46999999998889999999998754322100 0000 0136788999999887777665
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|+++|++. .+. .||++++
T Consensus 132 -----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~ 204 (236)
T TIGR03864 132 -----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVV 204 (236)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEE
Confidence 599999999999999999999999999999999999999999999997545889999988764 555 5999999
Q ss_pred ecCCeEEEecCCC
Q 044411 182 MAEGKILYHGPRK 194 (363)
Q Consensus 182 L~~G~iv~~G~~~ 194 (363)
|++|++++.|+++
T Consensus 205 l~~G~i~~~~~~~ 217 (236)
T TIGR03864 205 LHRGRVLADGAAA 217 (236)
T ss_pred EeCCeEEEeCCHH
Confidence 9999999887654
No 112
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=212.22 Aligned_cols=147 Identities=23% Similarity=0.257 Sum_probs=119.6
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .+...||+||+.+.....+. ...+. ..+++++++.+||.+..++.
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gL~~~~~~~ 138 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL----------PEDEV------------RKRVDNALKRTGIEHLKDKP 138 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCC----------CHHHH------------HHHHHHHHHHCCChhhhhCC
Confidence 467999999863 34568999999875432211 00110 11478889999998877766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+++|+. +++..+||++
T Consensus 139 ~~-----~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri 212 (283)
T PRK13636 139 TH-----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNV 212 (283)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEE
Confidence 54 59999999999999999999999999999999999999999999999875588999988765 4778899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 213 ~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 213 FVMKEGRVILQGNPKE 228 (283)
T ss_pred EEEECCEEEEeCCHHH
Confidence 9999999999988653
No 113
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=5.6e-26 Score=203.97 Aligned_cols=138 Identities=22% Similarity=0.320 Sum_probs=114.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+.....+.. ..+. ..++.++++.+|+++..++.+
T Consensus 77 ~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 134 (214)
T cd03292 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP----------PREI------------RKRVPAALELVGLSHKHRALP 134 (214)
T ss_pred HHheEEEecCchhccCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCHHHhhCCh
Confidence 457999999999999999999998864332110 0000 014778899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ ..+.++||+++
T Consensus 135 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~ 207 (214)
T cd03292 135 A-----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVI 207 (214)
T ss_pred h-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999875 488999988776 47888999999
Q ss_pred eecCCeE
Q 044411 181 LMAEGKI 187 (363)
Q Consensus 181 vL~~G~i 187 (363)
+|++|++
T Consensus 208 ~l~~G~~ 214 (214)
T cd03292 208 ALERGKL 214 (214)
T ss_pred EEeCCcC
Confidence 9999974
No 114
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=8.7e-26 Score=208.49 Aligned_cols=146 Identities=22% Similarity=0.224 Sum_probs=118.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhh-hccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccc-cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTY-CQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICA-DT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~ 98 (363)
++.++|++|++.+++.+||+||+.++.. .... ..... ..++.++++.+|+.+.. ++
T Consensus 91 ~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SKQEA------------RERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred hhceEEEecCcccCCCCcHHHHHHHHHHHhCCC----------CHHHH------------HHHHHHHHHHcCCChhhhhC
Confidence 4579999999999999999999987532 1110 00000 11477889999997653 54
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ +.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++..+||+
T Consensus 149 ~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~~~~~d~ 221 (257)
T PRK10619 149 YP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSH 221 (257)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCE
Confidence 43 56999999999999999999999999999999999999999999999976 488999988766 478889999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
+++|++|++++.|+++.
T Consensus 222 i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 222 VIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred EEEEECCEEEEeCCHHH
Confidence 99999999999887653
No 115
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.5e-26 Score=212.93 Aligned_cols=145 Identities=23% Similarity=0.227 Sum_probs=117.5
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.+|||+|++ .+++ .||.||+.|+....+. ...+. ..++.++++.+||. +..+
T Consensus 84 ~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gL~~~~~~ 140 (286)
T PRK13646 84 RKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKM----------NLDEV------------KNYAHRLLMDLGFSRDVMS 140 (286)
T ss_pred HhheEEEecChHhccch-hhHHHHHHhhHHHcCC----------CHHHH------------HHHHHHHHHHcCCChhhhh
Confidence 56799999985 3555 5999999886432111 00000 11477889999996 5666
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++.|.|||+++|+. +++.++||
T Consensus 141 ~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~d 214 (286)
T PRK13646 141 QSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYAD 214 (286)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCC
Confidence 554 469999999999999999999999999999999999999999999999765689999998765 47888999
Q ss_pred ceeeecCCeEEEecCCC
Q 044411 178 DIILMAEGKILYHGPRK 194 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~ 194 (363)
++++|++|++++.|+++
T Consensus 215 ri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 215 EVIVMKEGSIVSQTSPK 231 (286)
T ss_pred EEEEEECCEEEEECCHH
Confidence 99999999999998765
No 116
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.1e-26 Score=209.25 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=121.1
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
..++|++|++.+++.+||.||+.++....... .......... .... ...+...++.++++.+|+.+..++.++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~---~~~~~~~~~~---~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKT---GLFSGLLKTP---AFRR-AESEALDRAATWLERVGLLEHANRQAG 152 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccc---hhhhhhcccc---cccc-chhHHHHHHHHHHHhCChhhhhhCChh
Confidence 35899999999999999999999864311000 0000000000 0000 000011247778999999877776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+. +++.++||++++
T Consensus 153 -----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~ 226 (255)
T PRK11300 153 -----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYV 226 (255)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999765578999988765 488899999999
Q ss_pred ecCCeEEEecCCCC
Q 044411 182 MAEGKILYHGPRKV 195 (363)
Q Consensus 182 L~~G~iv~~G~~~~ 195 (363)
|++|++++.|+++.
T Consensus 227 l~~g~i~~~~~~~~ 240 (255)
T PRK11300 227 VNQGTPLANGTPEE 240 (255)
T ss_pred EECCeEEecCCHHH
Confidence 99999998887653
No 117
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=204.85 Aligned_cols=146 Identities=23% Similarity=0.278 Sum_probs=121.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+.....+.. .... ..+++++++.+|+.+..++.+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 128 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP----------KAEI------------KERVAEALDLVQLEGYANRKP 128 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCchhhcCCh
Confidence 467999999999999999999998764332110 0000 113678899999988777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||+++|++ .++.++||+++
T Consensus 129 ~-----~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~ 202 (232)
T cd03300 129 S-----QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIA 202 (232)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEE
Confidence 4 59999999999999999999999999999999999999999999999765588999998876 47889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+.+
T Consensus 203 ~l~~G~~~~~~~~~ 216 (232)
T cd03300 203 VMNKGKIQQIGTPE 216 (232)
T ss_pred EEECCEEEecCCHH
Confidence 99999999887643
No 118
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.93 E-value=6.2e-26 Score=203.74 Aligned_cols=137 Identities=22% Similarity=0.311 Sum_probs=113.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+.....+.. .... ..++.++++.+|+.+..++.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 135 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK----------EREI------------QRRVGAALRQVGLEHKADAFP 135 (214)
T ss_pred HhheEEEecChhhccCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCCh
Confidence 457999999999999999999998864322100 0000 114778899999987766665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++..+||+++
T Consensus 136 ~-----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~ 208 (214)
T TIGR02673 136 E-----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVI 208 (214)
T ss_pred h-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEE
Confidence 4 5999999999999999999999999999999999999999999999875 478999998776 58888999999
Q ss_pred eecCCe
Q 044411 181 LMAEGK 186 (363)
Q Consensus 181 vL~~G~ 186 (363)
+|++|+
T Consensus 209 ~l~~G~ 214 (214)
T TIGR02673 209 ILDDGR 214 (214)
T ss_pred EecCCC
Confidence 999985
No 119
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=7.7e-26 Score=205.47 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=116.8
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc---ccc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD---ICA 96 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~ 96 (363)
+.++|++|++. +.+.+|+.|++.+.....+.. .... ..++.++++.+|+. +..
T Consensus 62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 119 (230)
T TIGR02770 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL----------SKQA------------RALILEALEAVGLPDPEEVL 119 (230)
T ss_pred heeEEEecCchhhcCcccCHHHHHHHHHHHcCcc----------HHHH------------HHHHHHHHHHcCCCchHHHH
Confidence 57999999974 567799999997754321100 0000 11478889999997 344
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++..+|
T Consensus 120 ~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~ 193 (230)
T TIGR02770 120 KKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIA 193 (230)
T ss_pred hCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhC
Confidence 5544 469999999999999999999999999999999999999999999999765578999988765 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+++
T Consensus 194 d~i~~l~~G~i~~~~~~~ 211 (230)
T TIGR02770 194 DEVAVMDDGRIVERGTVK 211 (230)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999888764
No 120
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=9.7e-26 Score=206.98 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=117.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|+..+++ +|+.||+.+....++.. ...+. ..++..+++.+||. +..
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~---------~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 138 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIK---------DKKEL------------DEIVEESLKKAALWDEVKDRL 138 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCC---------CHHHH------------HHHHHHHHHHcCCCcchhhHh
Confidence 467999999998888 99999998864332100 00000 11377889999997 555
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.+ +.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++..+|
T Consensus 139 ~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~ 210 (247)
T TIGR00972 139 HDSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARIS 210 (247)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhC
Confidence 5544 46999999999999999999999999999999999999999999999875 37999988766 4788999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+++
T Consensus 211 d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 211 DRTAFFYDGELVEYGPTE 228 (247)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999888764
No 121
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1e-25 Score=206.16 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=119.7
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.++..... ... .......... ...+++++++.+|+.+..++.++
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-~~~-~~~~~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDK-SVF-ASLFFRLSAE------------EKDRIEEVLETIGLADEADRLAG 142 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhccc-ccc-cccccccHHH------------HHHHHHHHHHHcCCchhhcCChh
Confidence 469999999999999999999988643110 000 0000000000 01247888999999887776655
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++
T Consensus 143 -----~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~ 214 (242)
T TIGR03411 143 -----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTV 214 (242)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEE
Confidence 5999999999999999999999999999999999999999999999864 57999988766 478889999999
Q ss_pred ecCCeEEEecCCCC
Q 044411 182 MAEGKILYHGPRKV 195 (363)
Q Consensus 182 L~~G~iv~~G~~~~ 195 (363)
|++|++++.|+++.
T Consensus 215 l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 215 LHQGSVLAEGSLDQ 228 (242)
T ss_pred EECCeEEeeCCHHH
Confidence 99999998887553
No 122
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.1e-26 Score=208.16 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=116.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-CCccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-GLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ 99 (363)
++.++|++|+..+++.+||.||+.++..... . .... .+++++++.+ ++.+..++.
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~----------~~~~------------~~~~~~l~~~~~l~~~~~~~ 134 (237)
T PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAE--R----------DQFQ------------ERIKWVYELFPRLHERRIQR 134 (237)
T ss_pred HhCEEEeccCcccCCCCcHHHHHHHhhhccC--h----------hHHH------------HHHHHHHHHHHHHHHHHhCc
Confidence 4569999999999999999999987532110 0 0000 1245566666 466555554
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++.++||++
T Consensus 135 ~-----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i 207 (237)
T PRK11614 135 A-----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRG 207 (237)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEE
Confidence 4 46999999999999999999999999999999999999999999999876 488999988765 4788999999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|++++.|++++.
T Consensus 208 ~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 208 YVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEEeCCEEEeeCCHHHH
Confidence 99999999999886544
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=207.73 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=119.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+........ .... ..+++++++.+||.+..++.+
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 132 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLS----------RAED------------DALVAAALAQVDLAHLAGRDY 132 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCC----------cHHH------------HHHHHHHHHHcCCHhHhcCCc
Confidence 356999999988888999999998754221100 0000 013678899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHh------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLV------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
+ .|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|.|||+++|++ .++..
T Consensus 133 ~-----~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~ 206 (258)
T PRK13548 133 P-----QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAAR 206 (258)
T ss_pred c-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHH
Confidence 5 59999999999999999 599999999999999999999999999998744588999988765 47888
Q ss_pred hhcceeeecCCeEEEecCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~ 195 (363)
+||++++|++|+++..|++++
T Consensus 207 ~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 207 YADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred hcCEEEEEECCEEEeeCCHHH
Confidence 999999999999998887543
No 124
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=1.1e-25 Score=205.27 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=121.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+....++.. .... ...++++++.+++.+..++.+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 128 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP----------KAKI------------KARVEELLELVQLEGLGDRYP 128 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhcCCC----------HHHH------------HHHHHHHHHHcCCHhHhhCCh
Confidence 467999999999999999999998764322110 0000 113678899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||+||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||+++|++ .++.++||+++
T Consensus 129 ~-----~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~ 202 (237)
T TIGR00968 129 N-----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIV 202 (237)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEE
Confidence 4 59999999999999999999999999999999999999999999998764478999998876 47889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|+.+.
T Consensus 203 ~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 203 VMSNGKIEQIGSPDE 217 (237)
T ss_pred EEECCEEEEecCHHH
Confidence 999999999888653
No 125
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=1.6e-25 Score=204.15 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=117.2
Q ss_pred ceeEEEEc-cccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVS-QYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~-Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++ |.+.+++.+||+||+.+.....+.. ..+. ..+++++++.+|+.+..++.
T Consensus 93 ~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gl~~~~~~~ 150 (236)
T cd03267 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLP----------PARF------------KKRLDELSELLDLEELLDTP 150 (236)
T ss_pred cccEEEEcCCccccCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhHhcCC
Confidence 45799998 5567888999999998764332110 0000 11367789999999888877
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|||+++|++ +++..+||++
T Consensus 151 ~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i 224 (236)
T cd03267 151 VR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRV 224 (236)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999765578999988776 4788999999
Q ss_pred eeecCCeEEEec
Q 044411 180 ILMAEGKILYHG 191 (363)
Q Consensus 180 ~vL~~G~iv~~G 191 (363)
++|++|++++.|
T Consensus 225 ~~l~~G~i~~~g 236 (236)
T cd03267 225 LVIDKGRLLYDG 236 (236)
T ss_pred EEEeCCEEEecC
Confidence 999999998764
No 126
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=1.3e-25 Score=206.77 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=120.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++..... . ...... ..++.++++.+|+.+..++.+
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~-~--------~~~~~~------------~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL-G--------MARAEA------------EKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred hhCeEEEecCcccCCCCcHHHHHHHHHHHhc-C--------CCHHHH------------HHHHHHHHHHcCChhHhhcCh
Confidence 5679999999999999999999987532110 0 000000 013678899999987776654
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|+++|++ +++..+||+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~ 218 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVC 218 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEE
Confidence 469999999999999999999999999999999999999999999998765588999998776 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+.+
T Consensus 219 ~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 219 FFDKGRIVEQGKPD 232 (252)
T ss_pred EEECCEEEEeCCHH
Confidence 99999999888765
No 127
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=213.62 Aligned_cols=145 Identities=23% Similarity=0.360 Sum_probs=116.8
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++||+|++ .+++ .||+||+.|+....+. ...+. ..++.++++.+||. +..+
T Consensus 115 ~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 115 RRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGV----------KKSEA------------KKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred HhcEEEEEECchhcccc-chHHHHHHhhHHhcCC----------CHHHH------------HHHHHHHHHHcCCChhHhc
Confidence 56799999986 4555 5999999886432110 00000 11477889999996 4555
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. +++..+||
T Consensus 172 ~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~ad 244 (320)
T PRK13631 172 RSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEVAD 244 (320)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCC
Confidence 544 46999999999999999999999999999999999999999999999875 488999988765 47888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
++++|++|+++..|++++
T Consensus 245 ri~vl~~G~i~~~g~~~~ 262 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYE 262 (320)
T ss_pred EEEEEECCEEEEeCCHHH
Confidence 999999999999998763
No 128
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=1.4e-25 Score=208.06 Aligned_cols=149 Identities=22% Similarity=0.234 Sum_probs=119.5
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++|++|++ .+++.+||.||+.+...... ....... ..++.++++.+|+. +..+
T Consensus 87 ~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~---------~~~~~~~------------~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT---------SLDESEQ------------KARIAELLDMVGLRSEDAD 145 (265)
T ss_pred hhceEEEecChhhhcCCCCCHHHHHHHHHHHhc---------CCCHHHH------------HHHHHHHHHHcCCChhhhh
Confidence 45799999986 46788999999976532110 0000000 12477889999996 5666
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
..+ +.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +.+..+||
T Consensus 146 ~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d 219 (265)
T TIGR02769 146 KLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQ 219 (265)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhc
Confidence 655 469999999999999999999999999999999999999999999999865588999988765 47888999
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
++++|++|++++.|+++..
T Consensus 220 ~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred EEEEEeCCEEEEECCHHHH
Confidence 9999999999999987644
No 129
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1e-25 Score=204.66 Aligned_cols=145 Identities=22% Similarity=0.206 Sum_probs=117.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-Cccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-LDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ 99 (363)
++.++|++|++.+++.+|+.||+.++....+.. . . ...+++++.++ +.+..++.
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~--~-------------~~~~~~l~~~~~l~~~~~~~ 128 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRR----------S--R-------------KIPDEIYELFPVLKEMLGRR 128 (230)
T ss_pred HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc----------h--H-------------HHHHHHHHHHHhHHHHhhCC
Confidence 456999999999999999999998764322100 0 0 02455666665 45555555
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|+++|+. +++..+||++
T Consensus 129 ~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v 202 (230)
T TIGR03410 129 G-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRY 202 (230)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998764578999988776 4788899999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|+++..|+.+..
T Consensus 203 ~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 203 YVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEECCEEEEECCHHHc
Confidence 99999999998876543
No 130
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=210.67 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=117.3
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
++.++|++|++. .+..+||.||+.++....... ..+. ..+++++++.+||. +..++
T Consensus 84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~~ 141 (287)
T PRK13641 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFS----------EDEA------------KEKALKWLKKVGLSEDLISK 141 (287)
T ss_pred HhceEEEEeChhhhhccchHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCChhHhhC
Confidence 457999999862 333589999998764322110 0000 11477889999997 56666
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. +.+.++||+
T Consensus 142 ~~~-----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~ 214 (287)
T PRK13641 142 SPF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADD 214 (287)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCE
Confidence 654 5999999999999999999999999999999999999999999999975 488999988765 588899999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
+++|++|++++.|+++.
T Consensus 215 v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 215 VLVLEHGKLIKHASPKE 231 (287)
T ss_pred EEEEECCEEEEeCCHHH
Confidence 99999999999887653
No 131
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=1.6e-25 Score=202.26 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=114.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+.....+.. ..+. ..++.++++.+|+.+..++.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 135 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGAS----------GDDI------------RRRVSAALDKVGLLDKAKNFP 135 (222)
T ss_pred HhheEEEecCccccccccHHHHHHhHHHhcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCCc
Confidence 467999999998889999999998864322110 0000 013677899999987776655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ +++..+||+++
T Consensus 136 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~ 208 (222)
T PRK10908 136 I-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRML 208 (222)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999876 478999988765 47888999999
Q ss_pred eecCCeEE
Q 044411 181 LMAEGKIL 188 (363)
Q Consensus 181 vL~~G~iv 188 (363)
+|++|+++
T Consensus 209 ~l~~G~i~ 216 (222)
T PRK10908 209 TLSDGHLH 216 (222)
T ss_pred EEECCEEc
Confidence 99999975
No 132
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=9.6e-26 Score=188.28 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=120.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.+.+|+|||...++|+||..||+..++.+++-..+ +....+.++|+.+||.+..+..
T Consensus 87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~----------------------~~~~~A~~lL~~vGLg~Rl~Hy- 143 (228)
T COG4181 87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSA----------------------DSRAGAKALLEAVGLGKRLTHY- 143 (228)
T ss_pred ccceeEEEEeeeccccchhhhhccchhhhcCCccc----------------------cHHHHHHHHHHHhCcccccccC-
Confidence 46799999999999999999999998776642111 1112467789999998876644
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+++|||||||||+||||++..|+|||-||||-+||..+..+|.+++-.+.++.|.|.|++||+| .+...|+|.+
T Consensus 144 ----P~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~ 217 (228)
T COG4181 144 ----PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQL 217 (228)
T ss_pred ----ccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhhee
Confidence 5579999999999999999999999999999999999999999999999988999999999876 5778899999
Q ss_pred eecCCeEEE
Q 044411 181 LMAEGKILY 189 (363)
Q Consensus 181 vL~~G~iv~ 189 (363)
-|..|+++.
T Consensus 218 r~~~G~l~~ 226 (228)
T COG4181 218 RLRSGRLVE 226 (228)
T ss_pred eeecceecc
Confidence 999999874
No 133
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=205.73 Aligned_cols=146 Identities=22% Similarity=0.277 Sum_probs=117.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++.+||.||+.++........ ...+. ..++.++++.+||.+ ..
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~--------~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK--------SKKEL------------QERVRWALEKAQLWDEVKDRL 140 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccC--------CHHHH------------HHHHHHHHHHcCCCcchhhhh
Confidence 4679999999988999999999988643221000 00000 113678899999854 33
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++|
T Consensus 141 ~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~ 212 (250)
T PRK14247 141 DAP-----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARIS 212 (250)
T ss_pred cCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhc
Confidence 444 456999999999999999999999999999999999999999999999853 68999988776 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+++
T Consensus 213 d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 213 DYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred CEEEEEECCeEEEECCHH
Confidence 999999999999988765
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1e-25 Score=208.98 Aligned_cols=151 Identities=22% Similarity=0.334 Sum_probs=120.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+||.||+.+...... .. . ...... ...+++++++.+++.+..++.+
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~----~-~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 145 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWH-GA----L-GRFGAA------------DREKVEEAISLVGLKPLAHRLV 145 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCccccc-cc----c-cCCCHH------------HHHHHHHHHHHcCCHHHhcCCc
Confidence 4569999999888899999999987532110 00 0 000000 0114778899999987777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++.++||+++
T Consensus 146 ~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~ 219 (265)
T PRK10575 146 D-----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLV 219 (265)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999765578999998776 47889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|+++..|++++
T Consensus 220 ~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 220 ALRGGEMIAQGTPAE 234 (265)
T ss_pred EEECCeEEEecCHHH
Confidence 999999998887653
No 135
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=206.95 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=115.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++ +|++||+.+.....+.. .... ..++.++++.+|+. +..
T Consensus 92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK14268 92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN----------KKDL------------DGVVENALRSAALWDETSDRL 148 (258)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCCcchhhhh
Confidence 457999999988888 99999998864322110 0000 01367788888884 334
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 149 ~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~ 220 (258)
T PRK14268 149 KSPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARIS 220 (258)
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhC
Confidence 4444 56999999999999999999999999999999999999999999999863 68999988765 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|++++.|+++
T Consensus 221 d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 221 DYTGFFLMGELIEFGQTR 238 (258)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988765
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=208.83 Aligned_cols=147 Identities=23% Similarity=0.312 Sum_probs=119.2
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .+...||.||+.+.....+. ..... ..+++++++.+||.+..++.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~l~~~~~~~ 134 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGL----------DEETV------------AHRVSSALHMLGLEELRDRV 134 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCC----------CHHHH------------HHHHHHHHHHCCChhHhcCC
Confidence 356899999863 34468999999875432110 00000 11377889999998877776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++.++||++
T Consensus 135 ~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv 208 (277)
T PRK13652 135 PH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYI 208 (277)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEE
Confidence 64 59999999999999999999999999999999999999999999999875588999998776 4788899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|++++
T Consensus 209 ~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 209 YVMDKGRIVAYGTVEE 224 (277)
T ss_pred EEEECCeEEEECCHHH
Confidence 9999999999987653
No 137
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=209.75 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=119.1
Q ss_pred ceeEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++ ..++..||.||+.++....+. ...+. ..++.++++.+||.+..++.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gL~~~~~~~ 137 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV----------PREEM------------VERVDQALRQVGMEDFLNRE 137 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCC----------CHHHH------------HHHHHHHHHHcCChhhhhCC
Confidence 45799999997 367788999999886432210 00000 11478889999999887776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|++. ++. .||++
T Consensus 138 ~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i 210 (279)
T PRK13635 138 PH-----RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRV 210 (279)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEE
Confidence 65 599999999999999999999999999999999999999999999998755889999988764 555 59999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 211 ~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 211 IVMNKGEILEEGTPE 225 (279)
T ss_pred EEEECCEEEEECCHH
Confidence 999999999998765
No 138
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=204.46 Aligned_cols=146 Identities=24% Similarity=0.281 Sum_probs=119.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhh-hhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFST-YCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++.+++.+||.||+.+.. ...+. ...+. ..++.++++.+|+.+..++.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGL----------SKDQA------------LARAEKLLERLRLKPYADRF 138 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCC----------CHHHH------------HHHHHHHHHHcCChhhhhCC
Confidence 457999999999999999999997532 11110 00000 11377889999998777766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|++. ++.++||++
T Consensus 139 ~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i 211 (242)
T PRK11124 139 PL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRV 211 (242)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEE
Confidence 54 5999999999999999999999999999999999999999999999875 4889999887764 778899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|.+|++++.|+++.
T Consensus 212 ~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 212 VYMENGHIVEQGDASC 227 (242)
T ss_pred EEEECCEEEEeCCHHH
Confidence 9999999999887653
No 139
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=207.11 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=120.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+|+.||+.++...... .. ...... ...++.++++.+|+.+..++.+
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~-----~~-~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 136 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLS-----LW-GRLSAE------------DNARVNQAMEQTRINHLADRRL 136 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhh-----hc-cCCCHH------------HHHHHHHHHHHcCCHHHHcCCc
Confidence 35699999999888999999999875311000 00 000000 0114778899999988777765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++.++||+++
T Consensus 137 ~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~ 209 (255)
T PRK11231 137 T-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLV 209 (255)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEE
Confidence 4 5999999999999999999999999999999999999999999999876 478999988776 48889999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|+++..|+++..
T Consensus 210 ~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 210 VLANGHVMAQGTPEEV 225 (255)
T ss_pred EEECCeEEEEcCHHHh
Confidence 9999999988876543
No 140
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=208.41 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=120.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+....... ......... ..++.++++.+||.+..++.+
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~-----~~~~~~~~~-------------~~~~~~~l~~~~l~~~~~~~~ 141 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQP-----LFTRWRKED-------------EEAVTKAMQATGITHLADQSV 141 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccc-----cccCCCHHH-------------HHHHHHHHHHcCCHHHhcCCc
Confidence 34699999999999999999999875311100 000000000 114778899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .||||||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++.|.|||+++|++ .++.++||+++
T Consensus 142 ~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~ 215 (265)
T PRK10253 142 D-----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLI 215 (265)
T ss_pred c-----cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 69999999999999999999999999999999999999999999999765578999988766 47899999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 216 ~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 216 ALREGKIVAQGAPKE 230 (265)
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999887653
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=2.8e-25 Score=201.41 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=114.4
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||.||+.+....+... ..+. ..++.++++.+|+.+..++.++
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGES----------SRQS------------RNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCHhHhhCChh
Confidence 46999999999999999999998754322100 0000 1147788999999887776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++. .+ ..||++++
T Consensus 146 -----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~ 218 (228)
T PRK10584 146 -----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLR 218 (228)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEE
Confidence 599999999999999999999999999999999999999999999997655889999988764 55 56999999
Q ss_pred ecCCeEEE
Q 044411 182 MAEGKILY 189 (363)
Q Consensus 182 L~~G~iv~ 189 (363)
|++|+++.
T Consensus 219 l~~g~i~~ 226 (228)
T PRK10584 219 LVNGQLQE 226 (228)
T ss_pred EECCEEEe
Confidence 99999875
No 142
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=1.4e-25 Score=200.93 Aligned_cols=137 Identities=25% Similarity=0.299 Sum_probs=111.1
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .++.+||.||+.+.....+.. .... ..+++++++.+||.+..++.
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 131 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP----------EEEI------------EERVEEALELVGLEGLRDRS 131 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCcHhhhcCC
Confidence 467999999875 467899999998754321100 0000 01367789999998777766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++..+||++
T Consensus 132 ~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i 204 (211)
T cd03225 132 PF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRV 204 (211)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEE
Confidence 54 59999999999999999999999999999999999999999999999864 88999998765 4788899999
Q ss_pred eeecCCe
Q 044411 180 ILMAEGK 186 (363)
Q Consensus 180 ~vL~~G~ 186 (363)
++|++|+
T Consensus 205 ~~l~~G~ 211 (211)
T cd03225 205 IVLEDGK 211 (211)
T ss_pred EEEeCCC
Confidence 9999885
No 143
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.6e-25 Score=205.02 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=114.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++ +||+||+.++....+... .... ..++.+.++.+++. +..
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~l~~~~ 144 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKD---------KKKL------------DEIVEQSLKKSALWNEVKDKL 144 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCC---------HHHH------------HHHHHHHHHHhCCchhhHHHH
Confidence 567999999988885 999999988643221000 0000 01366778888873 334
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|+|+++|++ +++.++|
T Consensus 145 ~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~ 216 (254)
T PRK14273 145 NTN-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRIS 216 (254)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhC
Confidence 544 456999999999999999999999999999999999999999999999953 68999888766 4788899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|+++.
T Consensus 217 d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 217 DRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999887653
No 144
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=212.83 Aligned_cols=155 Identities=17% Similarity=0.091 Sum_probs=118.6
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+.++||+|++. +.|.+||.+++............ .... ..+ ...++.++++.+||.+..+.
T Consensus 89 ~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~--~~~~--~~~------------~~~~~~~~L~~~gL~~~~~~- 151 (330)
T PRK15093 89 HNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGR--WWQR--FGW------------RKRRAIELLHRVGIKDHKDA- 151 (330)
T ss_pred CCEEEEecCcchhcCccccHHHHHHHHHHhhhcccc--cccc--HHH------------HHHHHHHHHHHCCCCChHHH-
Confidence 46999999975 67889999999764221100000 0000 000 01247889999999753211
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.+.++..|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++.++.|.|+|+++|+. ..+.++||+|
T Consensus 152 -~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri 229 (330)
T PRK15093 152 -MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKI 229 (330)
T ss_pred -HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEE
Confidence 12345679999999999999999999999999999999999999999999999875689999988765 5888999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 230 ~vm~~G~ive~g~~~~ 245 (330)
T PRK15093 230 NVLYCGQTVETAPSKE 245 (330)
T ss_pred EEEECCEEEEECCHHH
Confidence 9999999999998754
No 145
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=2.7e-25 Score=199.53 Aligned_cols=145 Identities=25% Similarity=0.322 Sum_probs=112.6
Q ss_pred ceeEEEEccccccC--CCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQYDLHI--PEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~--~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
++.++|++|++.+. +.+||.||+.+......... ....... ..+++++++.+|+.+..++
T Consensus 67 ~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~------~~~~~~~------------~~~~~~~l~~~~l~~~~~~ 128 (213)
T cd03235 67 RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF------RRLSKAD------------KAKVDEALERVGLSELADR 128 (213)
T ss_pred HhheEEeccccccccCCCCcHHHHHHhccccccccc------cCCCHHH------------HHHHHHHHHHcCCHHHHhC
Confidence 56799999998763 34899999987543210000 0000000 1147788999999877776
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ .||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||+
T Consensus 129 ~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~ 201 (213)
T cd03235 129 QIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDR 201 (213)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCE
Confidence 654 5999999999999999999999999999999999999999999999976 588999988766 478889999
Q ss_pred eeeecCCeEEEec
Q 044411 179 IILMAEGKILYHG 191 (363)
Q Consensus 179 v~vL~~G~iv~~G 191 (363)
+++|++| +++.|
T Consensus 202 i~~l~~~-~~~~g 213 (213)
T cd03235 202 VLLLNRT-VVASG 213 (213)
T ss_pred EEEEcCc-EeecC
Confidence 9999886 55544
No 146
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=208.69 Aligned_cols=145 Identities=22% Similarity=0.264 Sum_probs=118.7
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.+||++|++. .++..||.||+.|.....+. ...+. .+++.++++.+||.+..++.
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~L~~~~~~~ 140 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAV----------PRPEM------------IKIVRDVLADVGMLDYIDSE 140 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCC----------CHHHH------------HHHHHHHHHHCCChhHhcCC
Confidence 457999999974 67789999999875432110 00010 11477889999998877766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+.. .+ ..||++
T Consensus 141 ~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i 213 (282)
T PRK13640 141 P-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQV 213 (282)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEE
Confidence 5 4699999999999999999999999999999999999999999999997655889999998765 55 579999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 214 ~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 214 LVLDDGKLLAQGSPV 228 (282)
T ss_pred EEEECCEEEEeCCHH
Confidence 999999999998765
No 147
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=206.86 Aligned_cols=145 Identities=23% Similarity=0.256 Sum_probs=118.1
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .++.+||+||+.+........ ..+. ..++.++++.+||.+..++.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 139 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP----------PKKM------------KDIIDDLAKKVGMEDYLDKE 139 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC----------HHHH------------HHHHHHHHHHcCCHHHhhCC
Confidence 567999999964 677899999998764321100 0000 01377889999998877776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++.+.|||+++|++. ++. .||++
T Consensus 140 ~~-----~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~v 212 (271)
T PRK13632 140 PQ-----NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EAI-LADKV 212 (271)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HHh-hCCEE
Confidence 64 599999999999999999999999999999999999999999999997654589999998775 554 79999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|+++..|+++
T Consensus 213 ~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 213 IVFSEGKLIAQGKPK 227 (271)
T ss_pred EEEECCEEEEecCHH
Confidence 999999999888765
No 148
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=2.6e-25 Score=199.51 Aligned_cols=138 Identities=25% Similarity=0.306 Sum_probs=113.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhh-ccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYC-QGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++.+++.+|+.||+.++... ++. ...+. ..++.++++.+|+.+..++.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~l~~~~~~~ 132 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGM----------SKAEA------------EERALELLEKVGLADKADAY 132 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCC----------CHHHH------------HHHHHHHHHHcCCHhHhhhC
Confidence 46799999999999999999999876421 110 00000 11367789999998777766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++.++||++
T Consensus 133 ~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i 205 (213)
T cd03262 133 PA-----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRV 205 (213)
T ss_pred cc-----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999986 478999988765 5788999999
Q ss_pred eeecCCeE
Q 044411 180 ILMAEGKI 187 (363)
Q Consensus 180 ~vL~~G~i 187 (363)
++|++|++
T Consensus 206 ~~l~~g~i 213 (213)
T cd03262 206 IFMDDGRI 213 (213)
T ss_pred EEEeCCcC
Confidence 99999974
No 149
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=204.40 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=116.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++.+||.||+.++...+..... .... ..++.++++.+|+.. ..
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~--------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 143 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKS--------KKEL------------DERVEWALKKAALWDEVKDRL 143 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCC--------HHHH------------HHHHHHHHHHcCCccchhhhh
Confidence 45799999999999999999999876432211000 0000 013677788888743 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++..+|
T Consensus 144 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~ 215 (253)
T PRK14267 144 NDY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVS 215 (253)
T ss_pred ccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhC
Confidence 333 456999999999999999999999999999999999999999999999864 58999988766 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|++++.|+++
T Consensus 216 d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 216 DYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988764
No 150
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.9e-25 Score=203.01 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=114.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||.||+.++....+... .... ..++.++++.+|+.+......
T Consensus 86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 143 (253)
T PRK14242 86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKD---------KAYL------------AERVERSLRHAALWDEVKDRL 143 (253)
T ss_pred hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCC---------HHHH------------HHHHHHHHHHcCCchhhhHHh
Confidence 467999999988888 599999988643221100 0000 013677788888854211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||+++
T Consensus 144 -~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~ 219 (253)
T PRK14242 144 -HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTA 219 (253)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEE
Confidence 123456999999999999999999999999999999999999999999999853 68999988766 47889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 220 ~l~~G~i~~~g~~~ 233 (253)
T PRK14242 220 FFYMGKLIEVGPTE 233 (253)
T ss_pred EEECCEEEEeCCHH
Confidence 99999999988765
No 151
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.6e-25 Score=202.82 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=115.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .|+.||+.+....++... .... ..+++++++.+|+.+......
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKD---------NAFI------------RQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCc---------HHHH------------HHHHHHHHHHcCCCcchhhhh
Confidence 457999999988887 699999987643221100 0000 013677889999864221111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++ + ++|||+++|++. ++.++||+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEE
Confidence 12345699999999999999999999999999999999999999999999985 3 689999887764 7889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 217 ~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 217 FFYMGEMVEYDDTKK 231 (250)
T ss_pred EEECCEEEEECCHHH
Confidence 999999999998764
No 152
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.4e-25 Score=203.62 Aligned_cols=141 Identities=18% Similarity=0.284 Sum_probs=116.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 99 (363)
++.++|++|++.+++ .||+||+.+...... .. ..++.++++.+||. +..++.
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-------------~~-------------~~~~~~~l~~~~l~~~~~~~~ 128 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG-------------EK-------------NVDVEYYLSIVGLNKEYATRD 128 (241)
T ss_pred hhcEEEEecCchhch-hhHHHHHhcchhhcC-------------cH-------------HHHHHHHHHHcCCCHHHhhCC
Confidence 467999999988887 699999976432110 00 01367788999996 455554
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+. +++.++||++
T Consensus 129 ~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i 202 (241)
T PRK14250 129 V-----KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYT 202 (241)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998764588999988766 4788899999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|+++..|+++
T Consensus 203 ~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 203 AFLNKGILVEYAKTY 217 (241)
T ss_pred EEEeCCEEEEeCCHH
Confidence 999999999888765
No 153
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=195.81 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=128.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
+.+|||+|.+-.++|.+||.|.|.|.+.+++.... +. ..+++.+|+++++......+|
T Consensus 71 ~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~----------e~------------~~~~~~wLer~~i~~~~~~kI 128 (300)
T COG4152 71 KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA----------EI------------QKKLQAWLERLEIVGKKTKKI 128 (300)
T ss_pred hhhcccChhhhccCccCcHHHHHHHHHHhcCCcHH----------HH------------HHHHHHHHHhccccccccchH
Confidence 45799999999999999999999999988764321 11 124788999999988877666
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.+||.|++|++.+-.+++++|++++||||+|||||.+...+-+.+.++++ .|.|||+|+| .++.+.++||+++
T Consensus 129 -----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH-~Me~vEeLCD~ll 201 (300)
T COG4152 129 -----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSH-RMEHVEELCDRLL 201 (300)
T ss_pred -----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecc-hHHHHHHHhhhhh
Confidence 46999999999999999999999999999999999999999999999986 5999999986 5679999999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+.|.+|+.+
T Consensus 202 mL~kG~~V~~G~v~ 215 (300)
T COG4152 202 MLKKGQTVLYGTVE 215 (300)
T ss_pred eecCCceEEeccHH
Confidence 99999999999976
No 154
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=3.5e-25 Score=203.37 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=118.2
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+|+.||+.+..... .. .... ..+++++++.+||.+..++.++
T Consensus 69 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 125 (248)
T PRK03695 69 RHRAYLSQQQTPPFAMPVFQYLTLHQPDK-TR----------TEAV------------ASALNEVAEALGLDDKLGRSVN 125 (248)
T ss_pred hheEEecccCccCCCccHHHHHHhcCccC-CC----------cHHH------------HHHHHHHHHHcCCHhHhcCCcc
Confidence 45899999988888999999998753211 00 0000 1147788999999877776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhC-------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVG-------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~-------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
.||||||||++||++|+. +|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. .++..
T Consensus 126 -----~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~ 198 (248)
T PRK03695 126 -----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLR 198 (248)
T ss_pred -----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHH
Confidence 599999999999999997 6799999999999999999999999999975 488999988765 47889
Q ss_pred hhcceeeecCCeEEEecCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~ 195 (363)
+||++++|++|+++..|+.+.
T Consensus 199 ~~d~i~~l~~G~i~~~g~~~~ 219 (248)
T PRK03695 199 HADRVWLLKQGKLLASGRRDE 219 (248)
T ss_pred hCCEEEEEECCEEEEECCHHH
Confidence 999999999999999887653
No 155
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=3.5e-25 Score=224.17 Aligned_cols=146 Identities=20% Similarity=0.190 Sum_probs=120.8
Q ss_pred ceeEEEEccc-cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQY-DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~-~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|+ +.+++.+||+||+.++....+.. ..+. ..++.++++.+||++..++.
T Consensus 108 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gl~~~~~~~ 165 (520)
T TIGR03269 108 RKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GKEA------------VGRAVDLIEMVQLSHRITHI 165 (520)
T ss_pred hhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhhhhcC
Confidence 4569999997 67889999999998864322110 0010 12478899999998877766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+. ..+.++||++
T Consensus 166 ~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~i 239 (520)
T TIGR03269 166 AR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EVIEDLSDKA 239 (520)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEE
Confidence 54 59999999999999999999999999999999999999999999999765688999988765 4788899999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 240 ~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 240 IWLENGEIKEEGTPD 254 (520)
T ss_pred EEEeCCEEeeecCHH
Confidence 999999999887654
No 156
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.2e-25 Score=206.48 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=117.9
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .++..||.||+.+.....+. ..... .+++.++++.+||.+..++.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~----------~~~~~------------~~~~~~~l~~~gl~~~~~~~ 133 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL----------PPIEI------------RKRVDRALAEIGLEKYRHRS 133 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCC----------CHHHH------------HHHHHHHHHHCCCHHHhcCC
Confidence 456999999875 46678999999876432210 00000 11477889999998887776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+.. ++ ..||++
T Consensus 134 ~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v 205 (274)
T PRK13644 134 PK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRI 205 (274)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEE
Confidence 54 5999999999999999999999999999999999999999999999875 4899999988764 55 579999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 206 ~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 206 IVMDRGKIVLEGEPEN 221 (274)
T ss_pred EEEECCEEEEECCHHH
Confidence 9999999999988653
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.7e-25 Score=223.22 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=122.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++||+|++.+++.+||+||+.++...+.... ....+. ..+++++++.+|+.+..++.+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 141 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGI-------MDYDAM------------YLRAQKLLAQLKLDINPATPV 141 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCC-------cCHHHH------------HHHHHHHHHHcCCCCCcccch
Confidence 3569999999999999999999988643211000 000000 114788899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. ..+..+||+++
T Consensus 142 ~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~ 214 (506)
T PRK13549 142 G-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTIC 214 (506)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEE
Confidence 5 5999999999999999999999999999999999999999999999975 488999988765 58888999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|++++.|++++.
T Consensus 215 ~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 215 VIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEECCEEeeecccccC
Confidence 9999999999987654
No 158
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=5.6e-25 Score=202.77 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=116.1
Q ss_pred ceeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc---c
Q 044411 21 QKLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI---C 95 (363)
Q Consensus 21 ~~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~ 95 (363)
++.++|++|++. +.+.+|+.+++.+.+...+.. . . ..++.++++.++|.+ .
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~-------------~~~~~~~l~~~~l~~~~~~ 133 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP----------A-D-------------DATLTAALEAVGLENAARV 133 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCC----------h-H-------------HHHHHHHHHHcCCCChhhh
Confidence 357999999974 456789999886643221100 0 0 014778899999976 3
Q ss_pred ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 96 ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 96 ~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++.++
T Consensus 134 ~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~ 207 (254)
T PRK10418 134 LKLYP-----FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARL 207 (254)
T ss_pred hhcCC-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHh
Confidence 45444 469999999999999999999999999999999999999999999999765588999998766 478889
Q ss_pred hcceeeecCCeEEEecCCCC
Q 044411 176 FDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 176 ~D~v~vL~~G~iv~~G~~~~ 195 (363)
||++++|++|+++..|+++.
T Consensus 208 ~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 208 ADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred CCEEEEEECCEEEEecCHHH
Confidence 99999999999999887653
No 159
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=5.8e-25 Score=201.23 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=117.2
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccccccc
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTLVG 101 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 101 (363)
.++|++|++.+++.+|+.|++.+............ .....+ ...++.++++.+||. +..++.++
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEE---PLDLLD------------FLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccc---cccHHH------------HHHHHHHHHHHcCCchhhcccccc
Confidence 48999999999999999999987643211000000 000000 012477889999997 45555443
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh-hccee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL-FDDII 180 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~-~D~v~ 180 (363)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +.+..+ ||+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEE
Confidence 24999999999999999999999999999999999999999999999975 578999998876 477777 89999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 217 ~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 217 VLLDGRIVKSGDVE 230 (243)
T ss_pred EEeCCEEEEecCHH
Confidence 99999999888764
No 160
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.9e-25 Score=205.39 Aligned_cols=146 Identities=27% Similarity=0.307 Sum_probs=118.1
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .+...||.||+.+.....+. ...+. ..++.++++.+||.+..++.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~L~~~~~~~ 134 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL----------SKEEV------------EKRVKEALKAVGMEGFENKP 134 (275)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCC----------CHHHH------------HHHHHHHHHHCCCchhhcCC
Confidence 457999999863 33457999999875321110 00000 11477889999998888776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++++ |.|||+++|+. +.+..+||++
T Consensus 135 ~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~-~~~~~~~d~i 207 (275)
T PRK13639 135 PH-----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDV-DLVPVYADKV 207 (275)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999764 88999988765 5788899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 208 ~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 208 YVMSDGKIIKEGTPKE 223 (275)
T ss_pred EEEECCEEEEeCCHHH
Confidence 9999999999887653
No 161
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=4.5e-25 Score=222.30 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=122.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.++........ .....+. ..++.++++.+||.+..++.+
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~------~~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 139 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFG------RIDWKKM------------YAEADKLLARLNLRFSSDKLV 139 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccC------ccCHHHH------------HHHHHHHHHHcCCCCCccCch
Confidence 3569999999999999999999988643211000 0000000 114778899999998877766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. +++..+||+++
T Consensus 140 ~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~ 212 (501)
T PRK10762 140 G-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVT 212 (501)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999976 488999988765 58889999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|+++..|+++..
T Consensus 213 ~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 213 VFRDGQFIAEREVADL 228 (501)
T ss_pred EEeCCEEEEecCcCcC
Confidence 9999999999887643
No 162
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4e-25 Score=227.67 Aligned_cols=149 Identities=21% Similarity=0.234 Sum_probs=122.1
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++||+|++ .+++.+||.||+.+.....+... ..+. ..++.++++.+||. +..+
T Consensus 400 ~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~---------~~~~------------~~~~~~~L~~~gL~~~~~~ 458 (623)
T PRK10261 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLP---------GKAA------------AARVAWLLERVGLLPEHAW 458 (623)
T ss_pred cCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCC---------HHHH------------HHHHHHHHHHcCCCHHHhh
Confidence 45799999986 58899999999987643221100 0000 12478899999996 5566
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ ++|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||+++|+. ..+..+||
T Consensus 459 ~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~d 532 (623)
T PRK10261 459 RYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISH 532 (623)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCC
Confidence 655 469999999999999999999999999999999999999999999999876688999988765 58889999
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
+|++|++|++++.|++++.
T Consensus 533 ri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 533 RVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred EEEEEECCEEEEecCHHHH
Confidence 9999999999999987643
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=205.57 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=116.8
Q ss_pred ceeEEEEcccccc-CCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDLH-IPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++.. +...|+.||+.+.....+.. ..+. ..+++++++.+|+.+..++.
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 133 (271)
T PRK13638 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVP----------EAEI------------TRRVDEALTLVDAQHFRHQP 133 (271)
T ss_pred HhheEEEeeChhhccccccHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCHhHhcCC
Confidence 4579999998753 45568999998754322100 0000 11367789999998877766
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +.+..+||++
T Consensus 134 ~~-----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i 206 (271)
T PRK13638 134 IQ-----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAV 206 (271)
T ss_pred ch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999975 478999988765 4788899999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 207 ~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 207 YVLRQGQILTHGAPG 221 (271)
T ss_pred EEEECCEEEEeCCHH
Confidence 999999999988765
No 164
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=6.5e-25 Score=198.43 Aligned_cols=150 Identities=22% Similarity=0.308 Sum_probs=117.7
Q ss_pred ceeEEEEccccccC--CCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQYDLHI--PEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~--~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
++.++|++|++.++ ..+|+.||+.++..... .. . ...... ...++.++++.+|+.+..++
T Consensus 48 ~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-~~----~-~~~~~~------------~~~~~~~~l~~~~l~~~~~~ 109 (223)
T TIGR03771 48 WRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI-GW----L-RRPCVA------------DFAAVRDALRRVGLTELADR 109 (223)
T ss_pred hCcEEEecccccccCCCCccHHHHHHhcccccc-cc----c-cCCcHH------------HHHHHHHHHHHhCCchhhcC
Confidence 45699999998764 34899999987532110 00 0 000000 01147788999999877776
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||+
T Consensus 110 ~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~ 182 (223)
T TIGR03771 110 PVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDL-AQAMATCDR 182 (223)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCE
Confidence 654 5999999999999999999999999999999999999999999999875 488999998776 478899999
Q ss_pred eeeecCCeEEEecCCCCC
Q 044411 179 IILMAEGKILYHGPRKVC 196 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~ 196 (363)
++++ +|++++.|+++..
T Consensus 183 i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 183 VVLL-NGRVIADGTPQQL 199 (223)
T ss_pred EEEE-CCEEEeecCHHHh
Confidence 9999 8999999887654
No 165
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.5e-25 Score=207.88 Aligned_cols=146 Identities=23% Similarity=0.307 Sum_probs=115.5
Q ss_pred ceeEEEEcccccc-CCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 21 QKLSAYVSQYDLH-IPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
++.++|++|++.. +...||+||+.+.....+.. ..+. ..++.++++.++|. +..++
T Consensus 89 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN----------KQEA------------YKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCChhHhcC
Confidence 4579999998632 23469999998764321100 0000 11367788999994 56665
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||+++|++ +++.++||+
T Consensus 147 ~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~ 220 (289)
T PRK13645 147 SP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADE 220 (289)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCE
Confidence 55 469999999999999999999999999999999999999999999998765588999988765 478899999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+++
T Consensus 221 i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 221 VIVMHEGKVISIGSPF 236 (289)
T ss_pred EEEEECCEEEEeCCHH
Confidence 9999999999888754
No 166
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.7e-25 Score=206.06 Aligned_cols=147 Identities=25% Similarity=0.285 Sum_probs=118.5
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.+||++|++. .+...||.||+.|.....+.. ..+. ..+++++++.+||.+..++.
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~~ 141 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP----------PEEI------------RERVDESLKKVGMYEYRRHA 141 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCC----------HHHH------------HHHHHHHHHHCCCHhHhhCC
Confidence 567999999864 233479999998864322110 0000 11477889999999888877
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|.|||+++|++. ++.. ||++
T Consensus 142 ~~-----~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v 214 (280)
T PRK13633 142 PH-----LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRI 214 (280)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEE
Confidence 65 599999999999999999999999999999999999999999999997655889999988775 5654 9999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|++++.|++++.
T Consensus 215 ~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 215 IVMDSGKVVMEGTPKEI 231 (280)
T ss_pred EEEECCEEEEecCHHHH
Confidence 99999999999886543
No 167
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.9e-25 Score=201.47 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=114.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++ +||+||+.+.....+... .... ..++.++++.+++.+ ..
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 142 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKD---------KQVL------------DEAVEKSLKGASIWDEVKDRL 142 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCc---------HHHH------------HHHHHHHHHHcCCchhHHHHH
Confidence 567999999988887 899999987643221100 0000 013667788888743 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++ .++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++..+|
T Consensus 143 ~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~ 214 (252)
T PRK14239 143 HD-----SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRIS 214 (252)
T ss_pred hc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhC
Confidence 33 3456999999999999999999999999999999999999999999999864 57999988766 4788999
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|++++.|+.++
T Consensus 215 d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 215 DRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999987653
No 168
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9e-25 Score=208.01 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=117.6
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||||++.+++ .|++||+.|+....+.. ..+.. ...+..+++.++|.+..++.
T Consensus 161 lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~----------~~~~~-----------~~~~~~~l~~~~L~~~l~~~ 218 (329)
T PRK14257 161 LRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIN----------DRKIL-----------EKIVEKSLKSAALWDEVKDD 218 (329)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHhHHHhcCCC----------hHHHH-----------HHHHHHHHHHcCCcchhhhh
Confidence 3567999999988875 89999998864321100 00000 01255667777775433333
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .....||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++|+|+++|+. ..+.++||+|
T Consensus 219 ~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Dri 294 (329)
T PRK14257 219 LD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDET 294 (329)
T ss_pred hh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEE
Confidence 33 34567999999999999999999999999999999999999999999999864 58999988776 4788889999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|+++..|+++++
T Consensus 295 ivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 295 VFFYQGWIEEAGETKTI 311 (329)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998754
No 169
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.6e-25 Score=205.14 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=115.5
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++|++|++ .+++ .||+||+.+.....+.. ..+. ..+++++++.+||. ...+
T Consensus 84 ~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~ 140 (280)
T PRK13649 84 RKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVS----------QEEA------------EALAREKLALVGISESLFE 140 (280)
T ss_pred HhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCChhhhh
Confidence 45699999986 3454 79999998764321100 0000 11367789999997 3556
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++..+||
T Consensus 141 ~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d 213 (280)
T PRK13649 141 KNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYAD 213 (280)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCC
Confidence 554 46999999999999999999999999999999999999999999999976 488999998776 47888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
++++|++|++++.|+++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 214 FVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred EEEEEECCEEEEeCCHHH
Confidence 999999999998887653
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=200.41 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=116.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|+..+++.+|+.||+.+.....+... ..+. ..++.++++.+++.. ..
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 142 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVN---------RSEA------------DEIVESSLKRVALWDEVKDRL 142 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCC---------HHHH------------HHHHHHHHHHcCCchhhhHHh
Confidence 5679999999999999999999987543211000 0000 013677888899854 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 143 ~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~ 214 (252)
T PRK14256 143 KS-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVS 214 (252)
T ss_pred hC-----CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhC
Confidence 33 3456999999999999999999999999999999999999999999999974 47889888766 4788999
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|++++
T Consensus 215 d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 215 DYTAFFYMGDLVECGETKK 233 (252)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999888653
No 171
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.6e-25 Score=203.96 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=118.4
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. +++..|+.+|+.+........ .... ..++.++++.+|+.+..++.
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 139 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP----------YDEM------------HRRVSEALKQVDMLERADYE 139 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCC----------HHHH------------HHHHHHHHHHcCCchhhhCC
Confidence 467999999974 688899999998764321100 0000 01367889999998877765
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.||||||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++.|.|||+++|++. ++.. ||++
T Consensus 140 ~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i 212 (269)
T PRK13648 140 P-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHV 212 (269)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEE
Confidence 5 4699999999999999999999999999999999999999999999987655889999998775 5654 9999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 213 ~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 213 IVMNKGTVYKEGTPTE 228 (269)
T ss_pred EEEECCEEEEecCHHH
Confidence 9999999999887653
No 172
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=6.6e-25 Score=203.73 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=117.4
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
+.++|++|++. +++.+||.+++.+....... ...... ..++.++++.+||. +..++
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~~l~~~~~~~ 145 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD---------LEPEQR------------EKQIIETLRQVGLLPDHASY 145 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhccC---------CCHHHH------------HHHHHHHHHHcCCChHHHhc
Confidence 46999999875 57889999999875432210 000000 11377889999994 55555
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++..+||+
T Consensus 146 ~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~ 219 (267)
T PRK15112 146 YP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQ 219 (267)
T ss_pred Cc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCE
Confidence 44 469999999999999999999999999999999999999999999999865588999988776 478889999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|+++..|+++
T Consensus 220 i~~l~~G~i~~~~~~~ 235 (267)
T PRK15112 220 VLVMHQGEVVERGSTA 235 (267)
T ss_pred EEEEECCEEEecCCHH
Confidence 9999999999887765
No 173
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=7.3e-25 Score=202.22 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=119.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++..... . .. .....+ ...++.++++.+|+.+..++.+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~----~~-~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 135 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHR-S----LW-AGDSPH------------DAAVVDRALARTELSHLADRDM 135 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhh-h----hc-cCCCHH------------HHHHHHHHHHHcCcHhhhcCCc
Confidence 3469999999888888999999987531100 0 00 000000 0114778899999987777765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+.++||+++
T Consensus 136 ~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 208 (256)
T TIGR03873 136 S-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVV 208 (256)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999975 4789999987764 8889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|+++..|+.++
T Consensus 209 ~l~~G~i~~~g~~~~ 223 (256)
T TIGR03873 209 VLDGGRVVAAGPPRE 223 (256)
T ss_pred EEeCCCEEEecCHHH
Confidence 999999999887653
No 174
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.7e-25 Score=194.62 Aligned_cols=122 Identities=40% Similarity=0.732 Sum_probs=103.6
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++|++|++.+++.+||+||+.++.... .+
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------------------------~~-- 113 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------------------------GN-- 113 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------------------------cc--
Confidence 3567999999999999999999997753210 11
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
..+..||||||||++||+||+.+|+++||||||+|||+.++..+++.|++++++.+.|+|+++||+.+++.++||++
T Consensus 114 ---~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i 190 (202)
T cd03233 114 ---EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKV 190 (202)
T ss_pred ---cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeE
Confidence 12245999999999999999999999999999999999999999999999976546787877888777889999999
Q ss_pred eeecCCeEEEec
Q 044411 180 ILMAEGKILYHG 191 (363)
Q Consensus 180 ~vL~~G~iv~~G 191 (363)
++|++|++++.|
T Consensus 191 ~~l~~G~i~~~g 202 (202)
T cd03233 191 LVLYEGRQIYYG 202 (202)
T ss_pred EEEECCEEEecC
Confidence 999999998754
No 175
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=5.7e-25 Score=221.92 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=120.6
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.+..... . .. .+++.++++.+||.+..++.++
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------------~-~~------------~~~~~~~l~~~~l~~~~~~~~~ 139 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPKR-------------Q-AS------------MQKMKQLLAALGCQLDLDSSAG 139 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccccc-------------h-HH------------HHHHHHHHHHcCCCccccCChh
Confidence 46999999999999999999998753110 0 00 0147788999999887777665
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++..+||++++
T Consensus 140 -----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~ 212 (510)
T PRK15439 140 -----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISV 212 (510)
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 5999999999999999999999999999999999999999999999976 488999988765 578899999999
Q ss_pred ecCCeEEEecCCCCC
Q 044411 182 MAEGKILYHGPRKVC 196 (363)
Q Consensus 182 L~~G~iv~~G~~~~~ 196 (363)
|++|++++.|+++..
T Consensus 213 l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 213 MRDGTIALSGKTADL 227 (510)
T ss_pred EECCEEEEecChHHc
Confidence 999999999887643
No 176
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=200.60 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=114.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++. ||.||+.+....+..... .... ...+.++++.+|+.+...+..
T Consensus 85 ~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~--------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 143 (251)
T PRK14244 85 RAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKN--------KKKL------------DEIVEKSLTSVGLWEELGDRL 143 (251)
T ss_pred hhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCC--------HHHH------------HHHHHHHHHHcCCCchhhhHh
Confidence 5679999999888886 999999876332211000 0000 013677889999865221111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++ + +.|||+++|+.. ++.++||+++
T Consensus 144 -~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~ 219 (251)
T PRK14244 144 -KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVA 219 (251)
T ss_pred -hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEE
Confidence 12345699999999999999999999999999999999999999999999985 3 789999988764 7888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 220 ~l~~G~i~~~~~~~ 233 (251)
T PRK14244 220 FFQSGRIVEYNTTQ 233 (251)
T ss_pred EEECCEEEEeCCHH
Confidence 99999999888754
No 177
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=200.21 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=115.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++ +|++||+.|.....+... ..+. ..++.++++.+|+. +..
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 141 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKD---------KKEL------------DKIVEWALKKAALWDEVKDDL 141 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCc---------HHHH------------HHHHHHHHHHcCCchhhhhHh
Confidence 466999999998887 899999987643221100 0000 01366778888874 233
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++|
T Consensus 142 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~ 213 (251)
T PRK14270 142 KKS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVS 213 (251)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhc
Confidence 433 456999999999999999999999999999999999999999999999865 47899888776 4788999
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|++++.|++++
T Consensus 214 d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 214 DYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred CEEEEEECCeEEEeCCHHH
Confidence 9999999999999988653
No 178
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.7e-25 Score=200.55 Aligned_cols=149 Identities=20% Similarity=0.198 Sum_probs=115.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||+||+.++...++.... ... ...++.++++.+++.+......
T Consensus 78 ~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~--------~~~------------~~~~~~~~l~~~~l~~~~~~~~ 136 (246)
T PRK14269 78 RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKN--------KDE------------EEALVVDCLQKVGLFEEVKDKL 136 (246)
T ss_pred hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccC--------hHH------------HHHHHHHHHHHcCCChhhhHHh
Confidence 467999999998887 6999999886432210000 000 0113677899999953211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+...+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|+++|+. +++.++||+++
T Consensus 137 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~ 212 (246)
T PRK14269 137 -KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTA 212 (246)
T ss_pred -cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEE
Confidence 123457999999999999999999999999999999999999999999999863 78999988766 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 213 ~l~~G~i~~~g~~~ 226 (246)
T PRK14269 213 FFHLGELIEFGESK 226 (246)
T ss_pred EEECCEEEEECCHH
Confidence 99999999988765
No 179
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=226.71 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=119.7
Q ss_pred eeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc---cc
Q 044411 22 KLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI---CA 96 (363)
Q Consensus 22 ~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~ 96 (363)
+.+|||+|++ .+++.+||.||+.++...... ....+. ..++.++++.+||.+ ..
T Consensus 104 ~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~gL~~~~~~~ 162 (623)
T PRK10261 104 ADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQG---------ASREEA------------MVEAKRMLDQVRIPEAQTIL 162 (623)
T ss_pred CCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcC---------CCHHHH------------HHHHHHHHHHCCCCChhhHH
Confidence 4699999987 678999999999987543210 000110 124788899999964 34
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+..+ ..|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|+|||+++|+. ..+.++|
T Consensus 163 ~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~a 236 (623)
T PRK10261 163 SRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIA 236 (623)
T ss_pred hCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhC
Confidence 5444 569999999999999999999999999999999999999999999999865688999988654 5888999
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|+|++|++|++++.|+++.
T Consensus 237 dri~vl~~G~i~~~g~~~~ 255 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQ 255 (623)
T ss_pred CEEEEeeCCeecccCCHHH
Confidence 9999999999999888753
No 180
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=202.04 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=115.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++. ||.||+.++...++... .... ...++.++++.+|+.+......
T Consensus 99 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~--------~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 157 (267)
T PRK14235 99 RARVGMVFQKPNPFPK-SIYENVAYGPRIHGLAR--------SKAE------------LDEIVETSLRKAGLWEEVKDRL 157 (267)
T ss_pred hhceEEEecCCCCCCC-cHHHHHHHHHHhccccc--------chHH------------HHHHHHHHHHHcCCchhhhHHh
Confidence 4679999999888875 99999988653221100 0000 0113677899999964211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +.+..+||+++
T Consensus 158 -~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~ 233 (267)
T PRK14235 158 -HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTA 233 (267)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEE
Confidence 123456999999999999999999999999999999999999999999999864 57999988765 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 234 ~l~~G~i~~~g~~~ 247 (267)
T PRK14235 234 FFHLGNLVEVGDTE 247 (267)
T ss_pred EEECCEEEEeCCHH
Confidence 99999999988764
No 181
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=1.3e-24 Score=200.76 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=116.9
Q ss_pred ceeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-ccc
Q 044411 21 QKLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 97 (363)
++.++|++|++. +++.+|+.||+.+......... ..+. ..++.++++.+++.+ ..+
T Consensus 88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~ 146 (258)
T PRK11701 88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARH---------YGDI------------RATAGDWLERVEIDAARID 146 (258)
T ss_pred hcceEEEeeCcccccCccccHHHHHHHHHHHhccCc---------HHHH------------HHHHHHHHHHcCCChhHHh
Confidence 346999999973 6788899999976432111000 0000 113678899999974 556
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+. ..+..+||
T Consensus 147 ~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d 220 (258)
T PRK11701 147 DLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAH 220 (258)
T ss_pred CCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcC
Confidence 554 469999999999999999999999999999999999999999999998765588999988766 47888999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
++++|++|++++.|+++.
T Consensus 221 ~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 221 RLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred EEEEEECCEEEEeCCHHH
Confidence 999999999999887653
No 182
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=200.87 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=115.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++. ||+||+.+.....+... ..+. ..+++++++.+++.+ ..
T Consensus 92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~l 149 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKN---------KKKL------------QEIVEKSLKDVALWDEVKDRL 149 (259)
T ss_pred hhceEEEecCCccccc-CHHHHHHhHHHhcCCCC---------HHHH------------HHHHHHHHHHcCCchhhhhhh
Confidence 4679999999888885 99999987643221000 0000 013667788888853 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +++||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|+++|+. +.+.++|
T Consensus 150 ~~~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~ 221 (259)
T PRK14274 150 HTQ-----ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVS 221 (259)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhC
Confidence 333 456999999999999999999999999999999999999999999999863 67999988776 4788899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|+++.
T Consensus 222 d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 222 DQTAFFYMGELVECNDTNK 240 (259)
T ss_pred CEEEEEECCEEEEECCHHH
Confidence 9999999999999988664
No 183
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=200.67 Aligned_cols=145 Identities=20% Similarity=0.247 Sum_probs=115.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|+..+++.+||+||+.++....+.. ..... .++++++++.+|+. +..
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~---------~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 142 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVR---------NKKDL------------DELVEKSLRGANLWNEVKDRL 142 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCC---------CHHHH------------HHHHHHHHHHcCCchhhhhHh
Confidence 467999999999999999999998764322100 00000 11367788888884 333
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+. .++.++|
T Consensus 143 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~ 214 (258)
T PRK14241 143 DKP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVS 214 (258)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhC
Confidence 443 456999999999999999999999999999999999999999999999863 57999988766 4788999
Q ss_pred cceeeec------CCeEEEecCCC
Q 044411 177 DDIILMA------EGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~------~G~iv~~G~~~ 194 (363)
|++++|+ +|++++.|+++
T Consensus 215 d~i~~l~~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 215 DQTAFFNLEATGKPGRLVEIDDTE 238 (258)
T ss_pred CEEEEEecccCCCCceEEecCCHH
Confidence 9999997 79999888754
No 184
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=203.10 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=117.8
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .++..||.||+.++....+.. ..+. ..+++++++.+||.+..++.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 137 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP----------REEM------------IKRVDEALLAVNMLDFKTRE 137 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC----------HHHH------------HHHHHHHHHHCCCHhHhhCC
Confidence 467999999974 677899999998754321110 0000 11367889999998877765
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|+.. ++. .||++
T Consensus 138 ~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i 210 (277)
T PRK13642 138 P-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRI 210 (277)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEE
Confidence 5 4699999999999999999999999999999999999999999999998655889999987765 554 69999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|+++..|+++
T Consensus 211 ~~l~~G~i~~~g~~~ 225 (277)
T PRK13642 211 LVMKAGEIIKEAAPS 225 (277)
T ss_pred EEEECCEEEEeCCHH
Confidence 999999999988765
No 185
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=8.7e-25 Score=221.65 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=120.0
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++|++|++ .+++.+||.||+.++...+... ....+. ..++.++++.+||. +..+
T Consensus 361 ~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~~~------------~~~~~~~l~~~~l~~~~~~ 420 (529)
T PRK15134 361 RHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT--------LSAAQR------------EQQVIAVMEEVGLDPETRH 420 (529)
T ss_pred hhceEEEEeCchhhcCCcccHHHHHHHHHHhcccc--------CChHHH------------HHHHHHHHHHcCCCHHHHh
Confidence 45699999986 4788999999998864322100 000000 11477889999997 4566
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+. ..+.++||
T Consensus 421 ~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d 494 (529)
T PRK15134 421 RYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCH 494 (529)
T ss_pred cCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcC
Confidence 6554 59999999999999999999999999999999999999999999999875588999988655 58889999
Q ss_pred ceeeecCCeEEEecCCCC
Q 044411 178 DIILMAEGKILYHGPRKV 195 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~ 195 (363)
++++|++|+++..|++++
T Consensus 495 ~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 495 QVIVLRQGEVVEQGDCER 512 (529)
T ss_pred eEEEEECCEEEEEcCHHH
Confidence 999999999999887653
No 186
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=201.29 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=114.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|+..+++ .||+||+.+....... . ...+. ..+++++++.+++. +..
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~-~--------~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 150 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEK-L--------SRAEM------------DERVEWALTKAALWNEVKDKL 150 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCC-C--------CHHHH------------HHHHHHHHHHcCCChhhHHHH
Confidence 467999999988887 8999999876432110 0 00000 01467788999874 233
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+..+|
T Consensus 151 ~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~ 222 (260)
T PRK10744 151 HQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCS 222 (260)
T ss_pred hcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhC
Confidence 433 456999999999999999999999999999999999999999999999853 67999988776 4788899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|++++
T Consensus 223 d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 223 DYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999887653
No 187
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=9.3e-25 Score=202.96 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=118.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++..++.+||.||+.+......... .. ... +. ..++.++++.+|+.+..++.+
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--~~---~~~-~~------------~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRA--GA---LTH-RD------------GEIAWQALALAGATALVGRDV 143 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhccccccccc--cc---CCH-HH------------HHHHHHHHHHcCcHhhhcCCc
Confidence 3458999999876677999999987532110000 00 000 00 113678899999987766655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHh---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLV---------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~---------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
+ .|||||||||+||++|+ .+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ ++
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~ 217 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NL 217 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HH
Confidence 4 59999999999999999 599999999999999999999999999998765578999988776 47
Q ss_pred HHhhhcceeeecCCeEEEecCCCC
Q 044411 172 TFDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
+.++||++++|++|++++.|+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~ 241 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPAD 241 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHH
Confidence 888999999999999999887653
No 188
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=200.50 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=117.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++ +|+.||+.+.....+.. ...+. ..++.++++.+++.+..+...
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~---------~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 144 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWR---------PKLEI------------DDIVESALKDADLWDEIKHKI 144 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCC---------cHHHH------------HHHHHHHHHHcCCcchhhhHh
Confidence 467999999988888 89999998764321100 00000 013677888888754211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+++|++ .++.++||+++
T Consensus 145 -~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~ 222 (261)
T PRK14258 145 -HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTA 222 (261)
T ss_pred -cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEE
Confidence 1234569999999999999999999999999999999999999999999998754578999988776 58899999999
Q ss_pred eecC-----CeEEEecCCCC
Q 044411 181 LMAE-----GKILYHGPRKV 195 (363)
Q Consensus 181 vL~~-----G~iv~~G~~~~ 195 (363)
+|++ |++++.|++++
T Consensus 223 ~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 223 FFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred EEccCCCcCceEEEeCCHHH
Confidence 9999 99999988764
No 189
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=219.84 Aligned_cols=153 Identities=20% Similarity=0.139 Sum_probs=121.8
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|++.+++.+||+||+.++......... . ......+ ...++.++++.+||.+..++.++
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~--~-~~~~~~~------------~~~~~~~~l~~~gl~~~~~~~~~ 144 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCG--V-NIIDWRE------------MRVRAAMMLLRVGLKVDLDEKVA 144 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhcccccccccc--c-cccCHHH------------HHHHHHHHHHHcCCCCCcccchh
Confidence 4699999999999999999999875321100000 0 0000000 01247888999999887777665
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. ..+..+||++++
T Consensus 145 -----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~-~~~~~~~d~v~~ 217 (510)
T PRK09700 145 -----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKL-AEIRRICDRYTV 217 (510)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999764 88999988765 588899999999
Q ss_pred ecCCeEEEecCCCCC
Q 044411 182 MAEGKILYHGPRKVC 196 (363)
Q Consensus 182 L~~G~iv~~G~~~~~ 196 (363)
|++|++++.|++++.
T Consensus 218 l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 218 MKDGSSVCSGMVSDV 232 (510)
T ss_pred EECCEEeeecchhhC
Confidence 999999999987643
No 190
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=6.5e-25 Score=244.17 Aligned_cols=146 Identities=24% Similarity=0.344 Sum_probs=125.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||+||++.+++.+||+|++.+.+..++... .+. .++++++++.+||.+.+|+.+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~----------~~~------------~~~v~~lLe~lgL~~~~dk~~ 2068 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPA----------EEI------------EKVANWSIQSLGLSLYADRLA 2068 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCH----------HHH------------HHHHHHHHHHcCCHHHhcCCh
Confidence 4679999999999999999999998765543210 000 114778899999999888877
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|+|+||||||+|||+.+++.+++.|++++++ |+|||+++|+ .+++..+|||++
T Consensus 2069 ~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~-mee~e~lcDrV~ 2141 (2272)
T TIGR01257 2069 G-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHS-MEECEALCTRLA 2141 (2272)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEE
Confidence 6 59999999999999999999999999999999999999999999999764 8899998865 469999999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 2142 IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2142 IMVKGAFQCLGTIQH 2156 (2272)
T ss_pred EEECCEEEEECCHHH
Confidence 999999999998763
No 191
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=185.50 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=122.4
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccC
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGD 102 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 102 (363)
.-|.|+|++.++|++||.||+.|+.++++..+. ++. +.+.+.+..+||.+..++.+
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~----------~R~------------~~a~q~l~~VgL~~~~~~~i-- 130 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA----------QRR------------EIAHQMLALVGLEGAEHKYI-- 130 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHH----------HHH------------HHHHHHHHHhCcccccccce--
Confidence 458999999999999999999999988765321 111 14778899999998876655
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 103 AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 103 ~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
-+|||||||||.|||||+.+|++||||||+++||.-+++++.++|-++.+..|+.++++||.. +|+.-+++++++|
T Consensus 131 ---~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvl 206 (259)
T COG4525 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVL 206 (259)
T ss_pred ---EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEe
Confidence 469999999999999999999999999999999999999999999999988899999988655 5788899999999
Q ss_pred cC--CeEEEecCCC
Q 044411 183 AE--GKILYHGPRK 194 (363)
Q Consensus 183 ~~--G~iv~~G~~~ 194 (363)
+. ||++..-+++
T Consensus 207 sp~pgRvv~~~~~d 220 (259)
T COG4525 207 SPGPGRVVERLPLD 220 (259)
T ss_pred cCCCceeeEecCCC
Confidence 84 7888755543
No 192
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=1.2e-24 Score=220.14 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=118.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-----c
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-----C 95 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~ 95 (363)
++.++|++|++.+++.+||.||+.+..... . ..... ..++.++++.+||.+ .
T Consensus 364 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~----------~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 420 (520)
T TIGR03269 364 KRYIGILHQEYDLYPHRTVLDNLTEAIGLE-L----------PDELA------------RMKAVITLKMVGFDEEKAEEI 420 (520)
T ss_pred hhhEEEEccCcccCCCCcHHHHHHHHHHcC-C----------CHHHH------------HHHHHHHHHhCCCCCccchhh
Confidence 356999999998999999999998753211 0 00000 014778899999975 3
Q ss_pred ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 96 ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 96 ~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+. ..+.++
T Consensus 421 ~~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~ 494 (520)
T TIGR03269 421 LDKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDV 494 (520)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHh
Confidence 45554 469999999999999999999999999999999999999999999999765688999988765 588899
Q ss_pred hcceeeecCCeEEEecCCC
Q 044411 176 FDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 176 ~D~v~vL~~G~iv~~G~~~ 194 (363)
||++++|++|++++.|+++
T Consensus 495 ~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 495 CDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred CCEEEEEECCEEEEECCHH
Confidence 9999999999999887653
No 193
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=213.43 Aligned_cols=150 Identities=25% Similarity=0.301 Sum_probs=123.1
Q ss_pred ceeEEEEccc--cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQY--DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~--~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
++.+-+|+|+ ..+.|.+||.+++.-....+.... ..+. .+++.++++.+||...
T Consensus 366 r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~---------~~~~------------~~rv~~ll~~VgL~~~--- 421 (539)
T COG1123 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS---------GAER------------RARVAELLELVGLPPE--- 421 (539)
T ss_pred hhheEEEEeCcccccCccccHHHHHHhHHhhhcccc---------hHHH------------HHHHHHHHHHcCCCHH---
Confidence 4556666766 468899999999987765442111 0111 1258999999999852
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
..++++++||||||||++|||||+.+|+++++|||||.||+..+..++++|+++.++.|.|.++++| +...+..+|||
T Consensus 422 -~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISH-Dl~vV~~i~dr 499 (539)
T COG1123 422 -FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH-DLAVVRYIADR 499 (539)
T ss_pred -HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeC-CHHHHHhhCce
Confidence 2335667899999999999999999999999999999999999999999999999988999999886 55699999999
Q ss_pred eeeecCCeEEEecCCCCC
Q 044411 179 IILMAEGKILYHGPRKVC 196 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~ 196 (363)
|++|.+|+++..|+.+.+
T Consensus 500 v~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 500 VAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred EEEEECCeEEEeCCHHHH
Confidence 999999999999987754
No 194
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=9.6e-25 Score=224.17 Aligned_cols=142 Identities=24% Similarity=0.297 Sum_probs=113.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.++||+|++.+|+ -|++|||.++..- ...+ ++.++++..+ +
T Consensus 421 lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~----~~~e------------------------ei~~al~~a~l~~~i~~l 471 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH-GTLRDNVLLGNPD----ASDE------------------------QLQQALENAWVSEFLPLL 471 (588)
T ss_pred HHhheEEecCCCcCCC-cCHHHHhhcCCCC----CCHH------------------------HHHHHHHHhCHHHHHHhc
Confidence 4678999999998887 4999999886210 0000 1222333322 4
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+. ...||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. .++|+|+++|++ ..
T Consensus 472 p~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~ 546 (588)
T PRK11174 472 PQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--ED 546 (588)
T ss_pred ccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HH
Confidence 45668888863 56799999999999999999999999999999999999999999999885 368999999887 45
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||+|++|++|+++..|+.++
T Consensus 547 i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 547 LAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHhCCEEEEEeCCeEeecCCHHH
Confidence 67899999999999999988653
No 195
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.3e-24 Score=198.35 Aligned_cols=146 Identities=22% Similarity=0.248 Sum_probs=113.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++.+|+.||+.++....+... ..+. .+.+.++++.+++. +..
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~l~~~~ 142 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRD---------RDHL------------MEVAERSLRGAALWDEVKDRL 142 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCC---------HHHH------------HHHHHHHHHHcCcchhhhhhh
Confidence 4579999999999999999999987543211000 0000 01244556666553 333
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ ..+.++|
T Consensus 143 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~ 214 (252)
T PRK14272 143 KTP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVS 214 (252)
T ss_pred cCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhC
Confidence 444 456999999999999999999999999999999999999999999999863 58999988776 4788899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|++++.|++++
T Consensus 215 d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 215 DTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999887653
No 196
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=197.54 Aligned_cols=144 Identities=23% Similarity=0.282 Sum_probs=113.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++ +|+.||+.+.....+... .... ..+++++++.+++.+ ..
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~l~~~~ 140 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKD---------KKKL------------DEIVEKSLKGAALWDEVKDRL 140 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCC---------HHHH------------HHHHHHHHHHcCCchhhHHHH
Confidence 557999999988888 899999988643221100 0000 013666788887642 33
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+. +.+..+|
T Consensus 141 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~ 212 (250)
T PRK14240 141 KKS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRIS 212 (250)
T ss_pred hcC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhC
Confidence 433 456999999999999999999999999999999999999999999999853 68999988765 4788999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+++
T Consensus 213 d~v~~l~~G~i~~~~~~~ 230 (250)
T PRK14240 213 DKTAFFLNGEIVEFGDTV 230 (250)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988755
No 197
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=197.88 Aligned_cols=145 Identities=23% Similarity=0.318 Sum_probs=117.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++.+||.||+.++....+... ..+. ..++.++++.+++.+ ..
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~---------~~~~------------~~~~~~~~~~~~l~~~~~~~~ 147 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE---------KREI------------KKIVEECLRKVGLWKEVYDRL 147 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCC---------HHHH------------HHHHHHHHHHcCCCccchhhh
Confidence 5679999999999999999999988643211000 0000 113677888999863 33
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+.. ++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|.++++ +.|||+++|+. ..+..+|
T Consensus 148 ~~~-----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~-~~~~~~~ 219 (257)
T PRK14246 148 NSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNP-QQVARVA 219 (257)
T ss_pred cCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCH-HHHHHhC
Confidence 433 456999999999999999999999999999999999999999999999863 58999998776 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+.+
T Consensus 220 d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 220 DYVAFLYNGELVEWGSSN 237 (257)
T ss_pred CEEEEEECCEEEEECCHH
Confidence 999999999999998765
No 198
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=2.2e-24 Score=194.59 Aligned_cols=139 Identities=28% Similarity=0.338 Sum_probs=114.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.++...... ....+. ..++.++++.+||.+..++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~---------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 139 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPN---------LSYQEA------------RERARAMLEAVGLGDHLDYYP 139 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccC---------CCHHHH------------HHHHHHHHHHcCChhhhhcCh
Confidence 46799999999999999999999886432210 000000 114788899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|++. +.++||+++
T Consensus 140 -----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~ 212 (220)
T TIGR02982 140 -----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIV 212 (220)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEE
Confidence 4699999999999999999999999999999999999999999999987655889999998763 568999999
Q ss_pred eecCCeE
Q 044411 181 LMAEGKI 187 (363)
Q Consensus 181 vL~~G~i 187 (363)
+|++|++
T Consensus 213 ~l~~g~~ 219 (220)
T TIGR02982 213 HMEDGKL 219 (220)
T ss_pred EEECCEE
Confidence 9999986
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-24 Score=201.15 Aligned_cols=144 Identities=22% Similarity=0.280 Sum_probs=113.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++. ||.||+.+.....+... ... ...++.++++.+|+. +..
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~---------~~~------------~~~~~~~~l~~~~l~~~l~~~~ 176 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGIND---------KKQ------------LEEIVEKSLRKAALWDEVSDRL 176 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCc---------HHH------------HHHHHHHHHHHhCCccchhhHh
Confidence 5679999999988875 99999988643221100 000 001356678888874 333
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 177 ~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~ 248 (286)
T PRK14275 177 DKN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVS 248 (286)
T ss_pred hCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhC
Confidence 443 456999999999999999999999999999999999999999999999864 57899988766 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+++
T Consensus 249 d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 249 DYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988765
No 200
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=198.14 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=113.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||.||+.+.....+... .... ..++.+.++.+++.+......
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~---------~~~~------------~~~~~~~~~~~~l~~~~~~~~ 139 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKD---------KKVL------------DEVVERSLRGAALWDEVKDRL 139 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCc---------hHHH------------HHHHHHHHHHcCCchhhhHHh
Confidence 467999999998887 899999987643211000 0000 013566777777753211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||+++
T Consensus 140 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~ 215 (249)
T PRK14253 140 -KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTA 215 (249)
T ss_pred -hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEE
Confidence 123456999999999999999999999999999999999999999999999864 47999988876 47889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 216 ~l~~G~i~~~g~~~ 229 (249)
T PRK14253 216 FFLMGELVEHDDTQ 229 (249)
T ss_pred EEECCEEEEeCCHH
Confidence 99999999988754
No 201
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=3.8e-24 Score=198.71 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=119.1
Q ss_pred ceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.++|++|+. .+++..|+.|++.+...... ....... ..+++++++.+|+. +..+
T Consensus 88 ~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~---------~~~~~~~------------~~~~~~~l~~~gl~~~~~~ 146 (268)
T PRK10419 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLL---------SLDKAER------------LARASEMLRAVDLDDSVLD 146 (268)
T ss_pred HhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc---------cCCHHHH------------HHHHHHHHHHcCCChhHhh
Confidence 46799999987 46678999999876432100 0000000 11477889999996 4566
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|+|+++|++ +.+.++||
T Consensus 147 ~~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d 220 (268)
T PRK10419 147 KRP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQ 220 (268)
T ss_pred CCC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCC
Confidence 554 469999999999999999999999999999999999999999999999765588999988776 47888999
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
++++|++|++++.|++++.
T Consensus 221 ~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 221 RVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred EEEEEECCEEeeeCChhhc
Confidence 9999999999999987654
No 202
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=217.02 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=121.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+||.||+.++..... .. . ....+ ...+++++++.+|+.+..++.+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~----~--~~~~~------------~~~~~~~~l~~~~l~~~~~~~~ 132 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTK-GM----F--VDQDK------------MYRDTKAIFDELDIDIDPRAKV 132 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhccccccc-cc----c--cCHHH------------HHHHHHHHHHHcCCCCCccCch
Confidence 4569999999989999999999987532110 00 0 00000 0124778899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++..+||+++
T Consensus 133 ~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~ 205 (491)
T PRK10982 133 A-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEIT 205 (491)
T ss_pred h-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999976 488999988765 58889999999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|+++..|+++..
T Consensus 206 ~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 206 ILRDGQWIATQPLAGL 221 (491)
T ss_pred EEECCEEEeecChhhC
Confidence 9999999999987643
No 203
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-24 Score=197.17 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=113.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++. |+.||+.+....++... .+.. ..+++++++.+++.+.....
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~----------~~~~-----------~~~~~~~l~~~~l~~~l~~~- 140 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTA----------QSRL-----------DEVVEKSLRQAALWDEVKDN- 140 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCCh----------hhHH-----------HHHHHHHHHHhCCchhhhhH-
Confidence 5679999999988875 99999988643221100 0000 01255667777764321111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.+..+..|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|++++ + +.|||+++|+. ..+.++||+++
T Consensus 141 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~-~~~~~~~d~i~ 217 (251)
T PRK14249 141 LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNM-QQAARASDWTG 217 (251)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHhhCCEEE
Confidence 122345699999999999999999999999999999999999999999999984 3 78999998766 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 218 ~l~~G~i~~~~~~~ 231 (251)
T PRK14249 218 FLLTGDLVEYGRTG 231 (251)
T ss_pred EEeCCeEEEeCCHH
Confidence 99999999998765
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=200.13 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=113.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++. |+.||+.+......... .... ..++.+.++.+++.+ ..
T Consensus 101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 158 (268)
T PRK14248 101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERR---------KSVL------------DEIVEESLTKAALWDEVKDRL 158 (268)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCc---------HHHH------------HHHHHHHHHHcCCCcchHHHH
Confidence 4579999999988885 99999987643211000 0000 013566778888742 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. ++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 159 ~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~ 230 (268)
T PRK14248 159 HSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVS 230 (268)
T ss_pred hcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhC
Confidence 443 456999999999999999999999999999999999999999999999864 57999988776 4788999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|++++.|+++
T Consensus 231 d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 231 DRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988765
No 205
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=2.7e-24 Score=216.69 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=119.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccc-ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICA-DTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ 99 (363)
++.++||+|++.+++.+||.||+.++......... ....+. ..+++++++.+||.+.. ++.
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 138 (500)
T TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGR------MAYNAM------------YLRAKNLLRELQLDADNVTRP 138 (500)
T ss_pred hCCEEEEeeccccCCCCcHHHHHHhhccccccccc------cCHHHH------------HHHHHHHHHHcCCCCCcccCc
Confidence 35699999999999999999999886432100000 000000 11477889999998654 444
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++..+||++
T Consensus 139 ~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~-~~~~~~~d~i 211 (500)
T TIGR02633 139 V-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKL-NEVKAVCDTI 211 (500)
T ss_pred h-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHHhCCEE
Confidence 4 45999999999999999999999999999999999999999999999975 588999988765 5888999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|+++.
T Consensus 212 ~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 212 CVIRDGQHVATKDMST 227 (500)
T ss_pred EEEeCCeEeeecCccc
Confidence 9999999999887653
No 206
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4e-24 Score=198.45 Aligned_cols=149 Identities=18% Similarity=0.157 Sum_probs=116.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||+||+.++....+... .... ..++.++++.++|.+..+...
T Consensus 100 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 100 RKHIGMVFQRPNPFA-KSIYENITFALERAGVKD---------KKVL------------DEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred hcceEEEecCCcccc-ccHHHHHHhHHHhcCCCC---------HHHH------------HHHHHHHHHHcCCCchhhhhh
Confidence 557999999988887 699999988643211000 0000 013677888888854221111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.++||+++
T Consensus 158 -~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~i~ 233 (267)
T PRK14237 158 -HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASDYTA 233 (267)
T ss_pred -cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcCEEE
Confidence 234567999999999999999999999999999999999999999999999853 689999888764 7889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|+++.
T Consensus 234 ~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 234 FFYLGDLIEYDKTRN 248 (267)
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999988753
No 207
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.8e-24 Score=196.70 Aligned_cols=149 Identities=23% Similarity=0.274 Sum_probs=115.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ +||+||+.+.....+... .... ..++++.++.+|+.+..+..
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~- 139 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKS---------KHKL------------DRIVEESLKKAALWDEVKSE- 139 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCc---------HHHH------------HHHHHHHHHHcCCCchhHHH-
Confidence 467999999998887 899999987643221100 0000 01366778888885421111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.+..+++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ +.+..+||+++
T Consensus 140 ~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~ 216 (250)
T PRK14262 140 LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIA 216 (250)
T ss_pred HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEE
Confidence 1233457999999999999999999999999999999999999999999999864 57999988765 47889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|+++..|++++
T Consensus 217 ~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 217 FMYRGELIEYGPTRE 231 (250)
T ss_pred EEECCEEEEecCHHH
Confidence 999999999887653
No 208
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=197.27 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=113.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++ .||+||+.+.....+... .... ..+++++++.+++.. ..
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 141 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKD---------KELI------------DQRVEESLKQAAIWKETKDNL 141 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCC---------HHHH------------HHHHHHHHHHcCCCcchHHHh
Confidence 567999999988886 799999987643221100 0000 013667788888842 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++|
T Consensus 142 ~~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~ 213 (251)
T PRK14251 142 DRN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRIS 213 (251)
T ss_pred ccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhc
Confidence 333 456999999999999999999999999999999999999999999999853 57999988776 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+.+
T Consensus 214 d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 214 DQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999888754
No 209
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=1.9e-24 Score=240.53 Aligned_cols=144 Identities=23% Similarity=0.292 Sum_probs=123.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+||++|++.+++.+||+||+.|.++.++... .+. .++++++++.+||.+..++.+
T Consensus 1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~----------~~~------------~~~v~~lL~~vgL~~~~~~~~ 1059 (2272)
T TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSW----------EEA------------QLEMEAMLEDTGLHHKRNEEA 1059 (2272)
T ss_pred hhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCH----------HHH------------HHHHHHHHHHcCCchhhcCCh
Confidence 5679999999999999999999999766543110 000 114788999999998888776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ +|||||||||+||+||+.+|+++||||||+|||+.++..++++|++++ .|+|||+++|+. +++..+||||+
T Consensus 1060 ~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdm-dea~~laDrI~ 1131 (2272)
T TIGR01257 1060 Q-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHM-DEADLLGDRIA 1131 (2272)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEE
Confidence 5 599999999999999999999999999999999999999999999984 388999988765 58889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 1132 iL~~GkL~~~Gs~~ 1145 (2272)
T TIGR01257 1132 IISQGRLYCSGTPL 1145 (2272)
T ss_pred EEECCEEEEecCHH
Confidence 99999999998865
No 210
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=6.9e-24 Score=222.59 Aligned_cols=152 Identities=26% Similarity=0.331 Sum_probs=114.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.+..+|.|.|+|.+| ..|++||+.|+..-- .+ + +.....+. +...--...|.+..+|.
T Consensus 425 lr~~iglV~QePvlF-~~tI~eNI~~G~~da---t~-~---~i~~a~k~--------------ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVLF-ATTIRENIRYGKPDA---TR-E---EIEEAAKA--------------ANAHDFILKLPDGYDTL 482 (1228)
T ss_pred HHhhcCeeeechhhh-cccHHHHHhcCCCcc---cH-H---HHHHHHHH--------------ccHHHHHHhhHHhhccc
Confidence 467899999999655 589999999863110 00 0 00000000 11111123467778999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+.-+. ||||||||++|||||+.+|+|||||||||+||+.+...+.+.|++.++ |+|.|+++|..+ .+.+ +|++
T Consensus 483 vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLS-tIrn-aD~I 557 (1228)
T KOG0055|consen 483 VGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLS-TIRN-ADKI 557 (1228)
T ss_pred ccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehh-hhhc-cCEE
Confidence 9974433 999999999999999999999999999999999999999999998764 678777788765 5555 9999
Q ss_pred eeecCCeEEEecCCCCCCC
Q 044411 180 ILMAEGKILYHGPRKVCPD 198 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~~~ 198 (363)
++|++|++++.|++++...
T Consensus 558 ~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEECCEEEEecCHHHHHh
Confidence 9999999999999886543
No 211
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4e-24 Score=199.00 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=114.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++. ||.||+.+.....+... .... ..+++++++.+++.+...+..
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 162 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINN---------RRVL------------DEAVERSLRGAALWDEVKDRL 162 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCc---------HHHH------------HHHHHHHHHHcCCChhHHHHh
Confidence 5679999999988886 99999987643221100 0000 013667788888853211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..+..|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||+++
T Consensus 163 -~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~ 238 (272)
T PRK14236 163 -HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTA 238 (272)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEE
Confidence 123456999999999999999999999999999999999999999999999964 57899888776 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 239 ~l~~G~i~~~g~~~ 252 (272)
T PRK14236 239 FMYMGKLVEYGDTD 252 (272)
T ss_pred EEECCEEEecCCHH
Confidence 99999999888765
No 212
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=199.53 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=111.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++ .||+||+.+.....+.. ... .+++.++++.+++. +..
T Consensus 93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~----------~~~-------------~~~~~~~l~~~~l~~~l~~~~ 148 (269)
T PRK14259 93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYT----------GDM-------------DELVERSLRKAAVWDECKDKL 148 (269)
T ss_pred hhceEEEccCCccch-hhHHHHHhhhhhhcCCc----------HHH-------------HHHHHHHHHHhCCcchhhhhh
Confidence 456999999998888 49999998865332100 000 01256667777764 233
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++..+|
T Consensus 149 ~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~ 220 (269)
T PRK14259 149 NES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVS 220 (269)
T ss_pred CCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhc
Confidence 433 456999999999999999999999999999999999999999999999853 57899988765 5889999
Q ss_pred cceeeecC-----------CeEEEecCCC
Q 044411 177 DDIILMAE-----------GKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~-----------G~iv~~G~~~ 194 (363)
|++++|++ |++++.|+++
T Consensus 221 d~i~~l~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 221 DMTAFFNAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred CEEEEEeccccccccccccceEEEeCCHH
Confidence 99999996 5678888765
No 213
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=3.5e-24 Score=217.22 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=117.9
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc---cc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI---CA 96 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~ 96 (363)
+.+||++|++. +++.+||.|++.+...... + ....+. ..+++++++.+||.+ ..
T Consensus 92 ~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~------------~~~~~~~l~~~gl~~~~~~~ 150 (529)
T PRK15134 92 NKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR-G--------MRREAA------------RGEILNCLDRVGIRQAAKRL 150 (529)
T ss_pred CceEEEecCchhhcCchhhHHHHHHHHHHHhc-C--------CCHHHH------------HHHHHHHHHHCCCCChHHHH
Confidence 46999999864 6778899999876432110 0 000010 124788999999975 24
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||+++|+. ..+..+|
T Consensus 151 ~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~ 224 (529)
T PRK15134 151 TDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLA 224 (529)
T ss_pred hhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhc
Confidence 5555 469999999999999999999999999999999999999999999999765588999988765 4788899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|+|++|++|++++.|++++
T Consensus 225 dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 225 DRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999988754
No 214
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.2e-24 Score=195.54 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=112.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++ .||+||+.+.....+... .... ..++.+.++.+++. +..
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~----------~~~~-----------~~~~~~~l~~~~l~~~i~~~~ 142 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKD----------KAVL-----------DEAVETSLKQAAIWDEVKDHL 142 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCC----------HHHH-----------HHHHHHHHHHcCCccchhhHH
Confidence 457999999988888 799999987643221100 0000 01245566777663 223
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++. +..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ ..+.++|
T Consensus 143 ~~~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~ 214 (252)
T PRK14255 143 HES-----ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRIS 214 (252)
T ss_pred hcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhC
Confidence 333 456999999999999999999999999999999999999999999999864 47888888766 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|++.
T Consensus 215 d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 215 DKTAFFLTGNLIEFADTK 232 (252)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988765
No 215
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=4.8e-24 Score=196.39 Aligned_cols=146 Identities=21% Similarity=0.261 Sum_probs=114.9
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
+.++|++|++. +.+.+|+.||+.+......... .. .. ..++.++++.+|+. ...++
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~-~~------------~~~~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH--------YG-NI------------RAAAHDWLEEVEIDPTRIDD 144 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHhcccc--------hH-HH------------HHHHHHHHHHcCCChhhhhc
Confidence 46899999864 4567899999865421110000 00 00 01477889999996 35665
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ +.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+..+||+
T Consensus 145 ~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~ 218 (253)
T TIGR02323 145 LP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQR 218 (253)
T ss_pred Cc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCE
Confidence 54 469999999999999999999999999999999999999999999998765588999988765 578889999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|+++..|+++
T Consensus 219 ~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 219 LLVMQQGRVVESGLTD 234 (253)
T ss_pred EEEEECCEEEEECCHH
Confidence 9999999999988765
No 216
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.9e-24 Score=215.98 Aligned_cols=153 Identities=19% Similarity=0.335 Sum_probs=119.0
Q ss_pred ceeEEEEccc---cccCCCCcHHHHHHhhhhhccCCCchhhhhhh-cHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cc
Q 044411 21 QKLSAYVSQY---DLHIPEMTVRETLDFSTYCQGVGSRADILLEL-SGREEEARIIPDPDIDTYMKTDYNLKILGLD-IC 95 (363)
Q Consensus 21 ~~~~~yv~Q~---~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~ 95 (363)
++.+||++|+ ..+++.+||.||+.++...+..... ..... ..... ..+++++++.+|+. +.
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~~------------~~~~~~~l~~~~l~~~~ 402 (510)
T PRK09700 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYK--GAMGLFHEVDE------------QRTAENQRELLALKCHS 402 (510)
T ss_pred HCCcEEccCccccCCCcCCCcHHHHhcccccccccccc--ccccccChHHH------------HHHHHHHHHhcCCCCCC
Confidence 3568999998 4688999999999875321100000 00000 00000 11367889999997 67
Q ss_pred ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 96 ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 96 ~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|++ .++..+
T Consensus 403 ~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~ 475 (510)
T PRK09700 403 VNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITV 475 (510)
T ss_pred ccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhh
Confidence 777765 5999999999999999999999999999999999999999999999986 488999988765 588899
Q ss_pred hcceeeecCCeEEEecCCC
Q 044411 176 FDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 176 ~D~v~vL~~G~iv~~G~~~ 194 (363)
||++++|++|+++..++..
T Consensus 476 ~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 476 CDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred CCEEEEEECCEEEEEecCc
Confidence 9999999999999887653
No 217
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.91 E-value=3e-24 Score=193.62 Aligned_cols=138 Identities=23% Similarity=0.350 Sum_probs=107.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||.||+.+..... . . .++.++++.+++.+..+..+
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----------~---------------~~~~~~l~~~~l~~~~~~~~ 127 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPLA---D----------D---------------ERILRAAELAGVTDFVNKHP 127 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCCC---C----------H---------------HHHHHHHHHcCcHHHHHhcc
Confidence 457999999988877 69999997642110 0 0 02445566667765554432
Q ss_pred c------CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 G------DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 g------~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
. ......||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||+++|++. .+ +
T Consensus 128 ~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~ 203 (220)
T cd03245 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-D 203 (220)
T ss_pred ccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-H
Confidence 1 113457999999999999999999999999999999999999999999999875 379999988764 44 7
Q ss_pred hhcceeeecCCeEEEec
Q 044411 175 LFDDIILMAEGKILYHG 191 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G 191 (363)
+||++++|++|++++.|
T Consensus 204 ~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 204 LVDRIIVMDSGRIVADG 220 (220)
T ss_pred hCCEEEEEeCCeEeecC
Confidence 99999999999998654
No 218
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.4e-24 Score=215.12 Aligned_cols=147 Identities=24% Similarity=0.244 Sum_probs=118.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.++........ ....+. ..++.++++.+||.+..++.+
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~-------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~ 138 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGI-------VNRRLL------------NYEAREQLEHLGVDIDPDTPL 138 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCC-------CCHHHH------------HHHHHHHHHHcCCCCCcCCch
Confidence 4579999999999999999999988532110000 000000 124778899999987666655
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++..+||+++
T Consensus 139 ~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~ 211 (501)
T PRK11288 139 K-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAIT 211 (501)
T ss_pred h-----hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999976 488999988765 48889999999
Q ss_pred eecCCeEEEecCC
Q 044411 181 LMAEGKILYHGPR 193 (363)
Q Consensus 181 vL~~G~iv~~G~~ 193 (363)
+|++|+++..++.
T Consensus 212 ~l~~G~i~~~~~~ 224 (501)
T PRK11288 212 VFKDGRYVATFDD 224 (501)
T ss_pred EEECCEEEeecCc
Confidence 9999999876653
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.2e-24 Score=196.84 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=114.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++ +||+||+.+........ ...+. ..++.++++.+|+. +..
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~---------~~~~~------------~~~~~~~l~~~~l~~~l~~~~ 144 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKL---------PQADL------------DEIVESALKGAALWQEVKDKL 144 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCC---------CHHHH------------HHHHHHHHHHcCCcchhhhHh
Confidence 457999999998888 89999998764322100 00000 01356778888874 233
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 145 ~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~i~~~~ 216 (259)
T PRK14260 145 NK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM-QQATRVS 216 (259)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhc
Confidence 43 3457999999999999999999999999999999999999999999999864 57999988766 5888999
Q ss_pred cceeeec-----CCeEEEecCCCC
Q 044411 177 DDIILMA-----EGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~-----~G~iv~~G~~~~ 195 (363)
|++++|+ +|++++.|++++
T Consensus 217 d~i~~l~~~~~~~G~i~~~~~~~~ 240 (259)
T PRK14260 217 DFTAFFSTDESRIGQMVEFGVTTQ 240 (259)
T ss_pred CeEEEEeccCCCCceEEEeCCHHH
Confidence 9999997 599999988763
No 220
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5e-24 Score=196.28 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=113.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++. ||+||+.+....++... .... ..++.++++.+++.+...+..
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~l~~~~ 143 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKN---------KKTL------------DTIVEKSLKGAALWDEVKDRL 143 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCC---------HHHH------------HHHHHHHHHHhcCchhhHHHh
Confidence 4579999999988885 99999988653321000 0000 013666778887743211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||+++
T Consensus 144 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~ 219 (253)
T PRK14261 144 -HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTG 219 (253)
T ss_pred -hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEE
Confidence 123456999999999999999999999999999999999999999999999864 47999988766 47888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|+++..|+++
T Consensus 220 ~l~~G~i~~~g~~~ 233 (253)
T PRK14261 220 FMYLGKLIEFDKTT 233 (253)
T ss_pred EEECCEEEEcCCHH
Confidence 99999999888765
No 221
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.3e-24 Score=194.83 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=114.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++. |+.||+.+.....+... .... ..++.++++.+|+.+......
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~l~~~~ 140 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDD---------EDFI------------EERVEESLKAAALWDEVKDKL 140 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCC---------HHHH------------HHHHHHHHHHcCCchhHHHHH
Confidence 4679999999988885 99999987543211000 0000 013667788888753211111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++...||+++
T Consensus 141 -~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~ 216 (250)
T PRK14266 141 -DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTS 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEE
Confidence 223457999999999999999999999999999999999999999999999853 67999988776 48899999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 217 ~l~~G~i~~~g~~~ 230 (250)
T PRK14266 217 FFLNGEIIESGLTD 230 (250)
T ss_pred EEECCeEEEeCCHH
Confidence 99999999998765
No 222
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.6e-24 Score=197.08 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=115.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||+||+.+........ ...+. ..++.++++.+++.+..++..
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~---------~~~~~------------~~~~~~~l~~~~l~~~~~~~l 157 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLV---------PRKEF------------RGVAQARLTEVGLWDAVKDRL 157 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHHHhccCC---------CHHHH------------HHHHHHHHHHcCCCchhhhHh
Confidence 567999999988888 89999998764321100 00000 013566788888864322111
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..++.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|+. +++.++||+++
T Consensus 158 -~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~ 233 (276)
T PRK14271 158 -SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAA 233 (276)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEE
Confidence 123456999999999999999999999999999999999999999999999874 47999988766 47889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|+++..|+++.
T Consensus 234 ~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 234 LFFDGRLVEEGPTEQ 248 (276)
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999988763
No 223
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.7e-24 Score=214.55 Aligned_cols=151 Identities=18% Similarity=0.281 Sum_probs=119.3
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 96 (363)
++.++|++|+. .+++.+||.||+.++......... . ....+ ...+++++++.+++. +..
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~--~---~~~~~------------~~~~~~~~l~~~~l~~~~~ 399 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGS--R---IDDAA------------ELKTILESIQRLKVKTASP 399 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCc--c---cChHH------------HHHHHHHHHHhcCccCCCc
Confidence 34699999985 478899999999875321000000 0 00000 012478889999996 567
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..++++|+++++ .|.|||+++|+. +++.++|
T Consensus 400 ~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~ 472 (506)
T PRK13549 400 ELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLS 472 (506)
T ss_pred ccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhC
Confidence 77665 5999999999999999999999999999999999999999999999986 488999988765 5889999
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|++++
T Consensus 473 d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 473 DRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred CEEEEEECCEEEEEecccc
Confidence 9999999999999887764
No 224
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=7e-24 Score=189.26 Aligned_cols=132 Identities=22% Similarity=0.288 Sum_probs=107.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|++||+.+.....+.. .... ..++.++++.+|+.+..++.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~ 132 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLS----------KKEK------------REKKKEALEKVGLNLKLKQKI 132 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCchhhhcCCh
Confidence 457999999999999999999998864322110 0000 114778899999988777765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++. ...+||+++
T Consensus 133 ~-----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~ 204 (206)
T TIGR03608 133 Y-----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVI 204 (206)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEE
Confidence 4 5999999999999999999999999999999999999999999999876 4889999988764 346899998
Q ss_pred ee
Q 044411 181 LM 182 (363)
Q Consensus 181 vL 182 (363)
+|
T Consensus 205 ~l 206 (206)
T TIGR03608 205 EL 206 (206)
T ss_pred eC
Confidence 75
No 225
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.3e-24 Score=209.17 Aligned_cols=145 Identities=28% Similarity=0.344 Sum_probs=118.3
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI---- 94 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---- 94 (363)
.+++.++||+|++.+++ -|++||+.++..-. .. +.+.++++..|+.+
T Consensus 392 ~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~------------s~----------------e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 392 AWRKQISWVSQNPYLFA-GTIRENILLARPDA------------SD----------------EEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHHhHeeeeCCCCcccc-ccHHHHhhccCCcC------------CH----------------HHHHHHHHHhcHHHhhcC
Confidence 36789999999988776 59999998863210 00 12455555555543
Q ss_pred --cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 95 --CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 95 --~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
..|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++...|.+.|.++++ ++|+++++|.+ ..
T Consensus 443 p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~ 517 (559)
T COG4988 443 PDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--ED 517 (559)
T ss_pred CCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HH
Confidence 45777774 5678999999999999999999999999999999999999999999999986 48999998876 45
Q ss_pred HhhhcceeeecCCeEEEecCCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~~ 197 (363)
..-+|+|++|++|++++.|..++..
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHh
Confidence 6689999999999999999887653
No 226
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=5.2e-24 Score=194.28 Aligned_cols=145 Identities=20% Similarity=0.346 Sum_probs=108.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|++.+++ .||.||+.+.... . ....... .... ....+.++.+ ++....+.
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~--~--~~~~~~~---~~~~------------~~~~~~l~~l~~~~~~~~~~ 134 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG--M--SMERVIE---AAKL------------AGAHDFISELPEGYDTIVGE 134 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC--C--CHHHHHH---HHHH------------cCcHHHHHhCcccccchhhc
Confidence 457999999987765 7999999874321 0 0000000 0000 0134445555 45544444
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
. ++.|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|++++ + |.|||+++|++. ++ ..||+
T Consensus 135 ~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~-~~~d~ 205 (237)
T cd03252 135 Q-----GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLS-TV-KNADR 205 (237)
T ss_pred C-----CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-HhCCE
Confidence 3 35699999999999999999999999999999999999999999999986 3 789999998774 55 46999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+++
T Consensus 206 v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 206 IIVMEKGRIVEQGSHD 221 (237)
T ss_pred EEEEECCEEEEEcCHH
Confidence 9999999999988754
No 227
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=1e-23 Score=186.56 Aligned_cols=115 Identities=42% Similarity=0.734 Sum_probs=100.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++|++|++.+++.+|++||+.+... .
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----------------------------------~---------------- 109 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----------------------------------L---------------- 109 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH----------------------------------h----------------
Confidence 35679999999999999999999975321 0
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
..||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|+|+|+++|++..++.++||++
T Consensus 110 ------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 110 ------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred ------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEE
Confidence 03999999999999999999999999999999999999999999999876 48899999988755788899999
Q ss_pred eeecCCeEEEec
Q 044411 180 ILMAEGKILYHG 191 (363)
Q Consensus 180 ~vL~~G~iv~~G 191 (363)
++|++|++++.|
T Consensus 183 ~~l~~G~i~~~~ 194 (194)
T cd03213 183 LLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCEEEecC
Confidence 999999998754
No 228
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=9.3e-24 Score=186.55 Aligned_cols=114 Identities=40% Similarity=0.700 Sum_probs=100.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+... . +
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~----------------------------------~----~------------ 107 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSAL----------------------------------L----R------------ 107 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHH----------------------------------H----h------------
Confidence 4679999999999999999999976321 0 0
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|+|+++|++..++.+.||+++
T Consensus 108 ------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~ 180 (192)
T cd03232 108 ------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLL 180 (192)
T ss_pred ------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEE
Confidence 3999999999999999999999999999999999999999999999876 488999999887545788999999
Q ss_pred eecC-CeEEEec
Q 044411 181 LMAE-GKILYHG 191 (363)
Q Consensus 181 vL~~-G~iv~~G 191 (363)
+|++ |++++.|
T Consensus 181 ~l~~~g~i~~~g 192 (192)
T cd03232 181 LLKRGGKTVYFG 192 (192)
T ss_pred EEcCCCeEEeCC
Confidence 9998 9998865
No 229
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.3e-24 Score=195.63 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=114.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.++ .+|+.||+.++....... . +. ..++.++++.+++.+......
T Consensus 88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~----------~-~~------------~~~~~~~l~~~~l~~~i~~~~ 143 (261)
T PRK14263 88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK----------G-DL------------GDRVKHALQGAALWDEVKDKL 143 (261)
T ss_pred hhceEEEecCCccc-cccHHHHHHHHHhhcCch----------H-HH------------HHHHHHHHHHcCCchhhhhhh
Confidence 46799999998877 599999998865332100 0 00 013677888888864322222
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ ...+.|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||+++
T Consensus 144 ~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~~tii~isH~~-~~i~~~~d~v~ 219 (261)
T PRK14263 144 K-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--DYTIALVTHNM-QQAIRVADTTA 219 (261)
T ss_pred h-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEE
Confidence 1 24567999999999999999999999999999999999999999999999853 67898888766 47889999999
Q ss_pred eec--------CCeEEEecCCC
Q 044411 181 LMA--------EGKILYHGPRK 194 (363)
Q Consensus 181 vL~--------~G~iv~~G~~~ 194 (363)
+|+ +|+++..|+.+
T Consensus 220 ~l~~~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 220 FFSVDISQGTRTGYLVEMGPTA 241 (261)
T ss_pred EEecccccccCCceEEEeCCHH
Confidence 995 89999988765
No 230
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=9.3e-24 Score=212.79 Aligned_cols=152 Identities=18% Similarity=0.297 Sum_probs=119.6
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 96 (363)
++.+||++|++ .+++.+||.||+.+......... ... ....+. ..+++++++.+||. +..
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~---~~~~~~------------~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA-GGS---LKHADE------------QQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc-ccc---cCHHHH------------HHHHHHHHHhcCCCCCCc
Confidence 35699999985 57899999999987532100000 000 000000 11477889999995 567
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+. +++.++|
T Consensus 390 ~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~-~~~~~~~ 462 (501)
T PRK10762 390 EQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEM-PEVLGMS 462 (501)
T ss_pred cCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHHHhhC
Confidence 77665 59999999999999999999999999999999999999999999999764 88999988765 5889999
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|+++.
T Consensus 463 d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 463 DRILVMHEGRISGEFTREQ 481 (501)
T ss_pred CEEEEEECCEEEEEecccc
Confidence 9999999999999888764
No 231
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.3e-24 Score=213.15 Aligned_cols=153 Identities=22% Similarity=0.341 Sum_probs=120.5
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 96 (363)
++.++|++|++ .+++.+||.||+.++........ ... ...... ..+++++++.+|+. +..
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~--~~~--~~~~~~------------~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRA--GCL--INNRWE------------AENADRFIRSLNIKTPSR 390 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccc--ccc--cChHHH------------HHHHHHHHHhcCcccCCc
Confidence 35689999985 48899999999987532110000 000 000000 11377889999994 677
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..++++|+++++ .|.|||+++|+. +++.++|
T Consensus 391 ~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~ 463 (501)
T PRK11288 391 EQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVA 463 (501)
T ss_pred cCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhC
Confidence 77766 4999999999999999999999999999999999999999999999986 488999988765 5899999
Q ss_pred cceeeecCCeEEEecCCCCC
Q 044411 177 DDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~~ 196 (363)
|++++|++|++++.|+++++
T Consensus 464 d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 464 DRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CEEEEEECCEEEEEEccccC
Confidence 99999999999999987644
No 232
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=7.6e-24 Score=197.99 Aligned_cols=152 Identities=24% Similarity=0.302 Sum_probs=126.9
Q ss_pred cceeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 20 PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 20 ~~~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
.|+.+-.||||+ .+-|.|||.+-+.-+...+... .+..+.. +++.+.|+.+||+...
T Consensus 361 lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~--------ls~~eR~------------~rv~~aL~EVGLDp~~- 419 (534)
T COG4172 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK--------LSAAERD------------QRVIEALEEVGLDPAT- 419 (534)
T ss_pred hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCC--------CCHHHHH------------HHHHHHHHHcCCChhH-
Confidence 467788999996 4789999999998776655321 1122221 2588899999998642
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.++++++.|||||||++||||++.+|++++||||||+||-..+.+|+++|+++.++.|.+-++++|+ ..-+-.+||
T Consensus 420 ---r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD-L~VvrAl~~ 495 (534)
T COG4172 420 ---RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD-LAVVRALCH 495 (534)
T ss_pred ---hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc-HHHHHHhhc
Confidence 2357788999999999999999999999999999999999999999999999999889999988765 458889999
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
+|+||.+|+|++.|+.+..
T Consensus 496 ~viVm~~GkiVE~G~~~~i 514 (534)
T COG4172 496 RVIVMRDGKIVEQGPTEAV 514 (534)
T ss_pred eEEEEeCCEEeeeCCHHHH
Confidence 9999999999999998754
No 233
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.3e-24 Score=197.67 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=112.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++. ||.||+.+.....+.. . .. ..+++++++.+|+.+ ..
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~----------~-~~------------~~~~~~~l~~~~l~~~i~~~~ 174 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD----------G-DI------------DERVEESLRRAALWDEVKDQL 174 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCc----------H-HH------------HHHHHHHHHHcCCCchhHHHH
Confidence 5679999999888885 9999998764322100 0 00 013677888888853 33
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+..+|
T Consensus 175 ~~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~-~~i~~~~ 246 (285)
T PRK14254 175 DSS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNM-QQAARIS 246 (285)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHhhc
Confidence 443 456999999999999999999999999999999999999999999999975 36899888765 4788899
Q ss_pred ccee-eecCCeEEEecCCC
Q 044411 177 DDII-LMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~-vL~~G~iv~~G~~~ 194 (363)
|+++ +|++|+++..|+++
T Consensus 247 dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 247 DKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred CEEEEEeeCCEEEEeCCHH
Confidence 9975 67999999888754
No 234
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.6e-24 Score=196.32 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=111.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC----cccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL----DICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~ 96 (363)
++.++|++|++.+++ .||.||+.++........ .... ...+.+.++.+++ .+..
T Consensus 104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~~~~~l~~~~ 161 (271)
T PRK14238 104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKD---------KKTL------------DEIVEKSLRGAAIWDELKDRL 161 (271)
T ss_pred hhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCc---------HHHH------------HHHHHHHHHHcCCcchHHHHH
Confidence 467999999988887 599999988643221100 0000 0124555666643 2233
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+. .+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 162 ~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~i~~~~ 233 (271)
T PRK14238 162 HD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNM-QQAARIS 233 (271)
T ss_pred hc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCH-HHHHHhC
Confidence 33 3456999999999999999999999999999999999999999999999864 58999988765 4788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..|+++
T Consensus 234 d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 234 DKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999988765
No 235
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=194.73 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=112.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc----cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 96 (363)
++.++|++|++.+++ .||.||+.+.....+.. . ... +++.++++.+++.+ ..
T Consensus 90 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~----------~-~~~------------~~~~~~l~~~~l~~~l~~~~ 145 (264)
T PRK14243 90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK----------G-DMD------------ELVERSLRQAALWDEVKDKL 145 (264)
T ss_pred hhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc----------h-HHH------------HHHHHHHHHhCchhhHHHHh
Confidence 457999999988887 59999998764322100 0 000 12455666667642 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+. .+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++|
T Consensus 146 ~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~ 217 (264)
T PRK14243 146 KQ-----SGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVS 217 (264)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhC
Confidence 33 3456999999999999999999999999999999999999999999999964 47999988765 5889999
Q ss_pred cceeeec---------CCeEEEecCCCCC
Q 044411 177 DDIILMA---------EGKILYHGPRKVC 196 (363)
Q Consensus 177 D~v~vL~---------~G~iv~~G~~~~~ 196 (363)
|++++|+ +|++++.|++++.
T Consensus 218 d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 218 DMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred CEEEEEecccccccccCceEEEeCCHHHH
Confidence 9999998 7999999886543
No 236
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=7.2e-24 Score=217.86 Aligned_cols=142 Identities=19% Similarity=0.213 Sum_probs=115.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.++.++||+|++.+|+. |++|||.++... . . +++.++++..|+
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~---~-d-------------------------~~i~~a~~~~gl~~~i~~l 462 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGRDI---S-E-------------------------EQVWQALETVQLAELARSL 462 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCCCC---C-H-------------------------HHHHHHHHHcCcHHHHHhc
Confidence 46789999999999886 999999885310 0 0 024444555553
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||||+.+|++|+||||||+||+.+...|.+.|+++++ ++|+|+++|++ ..
T Consensus 463 p~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~ 537 (592)
T PRK10790 463 PDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--ST 537 (592)
T ss_pred cccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HH
Confidence 3445777775 4567999999999999999999999999999999999999999999998863 58999999887 45
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
...||+|++|++|+++..|+.++.
T Consensus 538 l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 538 IVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HHhCCEEEEEECCEEEEEcCHHHH
Confidence 678999999999999999987643
No 237
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.91 E-value=8.6e-24 Score=194.33 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=112.1
Q ss_pred ceeEEEEccccccCCCC--cHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEM--TVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~l--TV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
+..++|++|++.+++.+ |+.+++.+.. + .. ..++.++++.+|+.+..++
T Consensus 66 ~~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~----------~~----------------~~~~~~~l~~~gl~~~~~~ 116 (251)
T PRK09544 66 KLRIGYVPQKLYLDTTLPLTVNRFLRLRP---G----------TK----------------KEDILPALKRVQAGHLIDA 116 (251)
T ss_pred ccCEEEeccccccccccChhHHHHHhccc---c----------cc----------------HHHHHHHHHHcCChHHHhC
Confidence 34699999998777764 7777764311 0 00 0136678899999887776
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+. .|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++++.|.|||+++|++ +++.++||+
T Consensus 117 ~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~ 190 (251)
T PRK09544 117 PMQ-----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDE 190 (251)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCE
Confidence 654 59999999999999999999999999999999999999999999998765578999988766 588899999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
+++|++ +++..|++++
T Consensus 191 i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 191 VLCLNH-HICCSGTPEV 206 (251)
T ss_pred EEEECC-ceEeeCCHHH
Confidence 999965 7888887653
No 238
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.91 E-value=5.8e-24 Score=218.65 Aligned_cols=150 Identities=25% Similarity=0.323 Sum_probs=115.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.+|||+|++.+|. -|++||+.++..... .+ +.......+ -+.+.+ ..+....+|.
T Consensus 545 lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~----~e---~i~~A~~~a------------g~~~fI--~~lP~gy~t~ 602 (709)
T COG2274 545 LRRQVGYVLQDPFLFS-GSIRENIALGNPEAT----DE---EIIEAAQLA------------GAHEFI--ENLPMGYDTP 602 (709)
T ss_pred HHhheeEEcccchhhc-CcHHHHHhcCCCCCC----HH---HHHHHHHHh------------CcHHHH--Hhcccccccc
Confidence 5789999999877665 699999988642110 00 000000000 011112 2466678888
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .|+|+|+++|.+ ...+.||+|
T Consensus 603 v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrI 677 (709)
T COG2274 603 VGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRI 677 (709)
T ss_pred ccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEE
Confidence 885 567899999999999999999999999999999999999999999999986 378999999887 477899999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
+||++|+++.+|+.++.
T Consensus 678 iVl~~Gkiv~~gs~~el 694 (709)
T COG2274 678 IVLDQGKIVEQGSHEEL 694 (709)
T ss_pred EEccCCceeccCCHHHH
Confidence 99999999999987643
No 239
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=195.99 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=112.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|+..+++. ||.||+.+........ .... ..+.+.++.+++. +..
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~----------~~~~-------------~~~~~~l~~~~l~~~l~~~~ 155 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK----------GNLD-------------ELVEDSLRRAAIWEEVKDKL 155 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCch----------HHHH-------------HHHHHHHHHcccchhhHHHh
Confidence 4679999999888874 9999998764322100 0000 0245566777763 233
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +.+..+|
T Consensus 156 ~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~ 227 (274)
T PRK14265 156 KE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVA 227 (274)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhC
Confidence 33 3456999999999999999999999999999999999999999999999864 57899988766 4888999
Q ss_pred cceeeec---------CCeEEEecCCCC
Q 044411 177 DDIILMA---------EGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~---------~G~iv~~G~~~~ 195 (363)
|++++|+ +|++++.|++++
T Consensus 228 d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 228 DWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred CEEEEEecccccccccCceEEEeCCHHH
Confidence 9999997 799999998764
No 240
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=191.64 Aligned_cols=145 Identities=20% Similarity=0.283 Sum_probs=109.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|++.+++ .||+||+.+..... ..... ...... ..+.+.++.+ ++.+..+.
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~----~~~~~---~~~~~~------------~~~~~~~~~l~~~l~~~~~~ 134 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPGA----TREEV---EEAARA------------ANAHEFIMELPEGYDTVIGE 134 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCCC----CHHHH---HHHHHH------------cCcHHHHHhcccCcceeecc
Confidence 457999999988886 69999998753211 00000 000000 0244556666 56655554
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.. ||+
T Consensus 135 ~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~ 205 (234)
T cd03251 135 R-----GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLS-TIEN-ADR 205 (234)
T ss_pred C-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHhh-CCE
Confidence 4 356999999999999999999999999999999999999999999999863 789999988774 5654 999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|+++..|+++
T Consensus 206 v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 206 IVVLEDGKIVERGTHE 221 (234)
T ss_pred EEEecCCeEeeeCCHH
Confidence 9999999999877653
No 241
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.90 E-value=1.9e-23 Score=188.93 Aligned_cols=132 Identities=22% Similarity=0.225 Sum_probs=107.3
Q ss_pred cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccCCcCCCCCh
Q 044411 31 DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGDAIRRGISG 110 (363)
Q Consensus 31 ~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 110 (363)
..+.+.+||.||+.+.....+.. .... ..++.++++.+|+.+..++.++ .|||
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~-----~LSg 145 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLS----------RKEI------------DEKIDEIIEFSELGDFIDLPVK-----TYSS 145 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 45668899999998764322110 0000 0136778899999888777665 5999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCeEEEe
Q 044411 111 GQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYH 190 (363)
Q Consensus 111 GqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~ 190 (363)
|||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++..+||++++|++|++++.
T Consensus 146 G~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 146 GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999998764 78999988765 478889999999999999876
Q ss_pred c
Q 044411 191 G 191 (363)
Q Consensus 191 G 191 (363)
|
T Consensus 224 g 224 (224)
T cd03220 224 G 224 (224)
T ss_pred C
Confidence 5
No 242
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.90 E-value=2.8e-23 Score=191.12 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=115.4
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccccccc
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTLVG 101 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 101 (363)
.++|++|++.+++.+|+.+++.+.......... ..+....+ ...++.++++.+|+. ...++.++
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQG---LPELDPLE------------FLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccc---cccccHHH------------HHHHHHHHHHHcCCchhhhccccc
Confidence 478999999999999999999875321100000 00000000 012467789999997 35555443
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh-hccee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL-FDDII 180 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~-~D~v~ 180 (363)
.+|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+..+ ||+++
T Consensus 150 ----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~-~~~~~~~d~i~ 223 (252)
T CHL00131 150 ----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQR-LLDYIKPDYVH 223 (252)
T ss_pred ----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhhCCEEE
Confidence 24999999999999999999999999999999999999999999999875 4889999988754 56665 89999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 224 ~l~~G~i~~~~~~~ 237 (252)
T CHL00131 224 VMQNGKIIKTGDAE 237 (252)
T ss_pred EEeCCEEEEecChh
Confidence 99999999998765
No 243
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.5e-23 Score=211.53 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=118.5
Q ss_pred eeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 22 KLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 22 ~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
+.++|++|+. .+++.+|+.||+........ .. ... .... ..+++++++.+||. +..+
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-~~----~~~-~~~~-------------~~~~~~~l~~~~l~~~~~~ 398 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR-GF----WIK-PARE-------------NAVLERYRRALNIKFNHAE 398 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhh-cc----ccC-hHHH-------------HHHHHHHHHHcCCCCCCcc
Confidence 4699999974 48889999999964211000 00 000 0000 11377889999997 6777
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++.++||
T Consensus 399 ~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d 471 (510)
T PRK15439 399 QAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMAD 471 (510)
T ss_pred Cccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCC
Confidence 7665 5999999999999999999999999999999999999999999999986 488999988765 58899999
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
++++|++|++++.|+++++
T Consensus 472 ~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 472 RVLVMHQGEISGALTGAAI 490 (510)
T ss_pred EEEEEECCEEEEEEccccC
Confidence 9999999999999887644
No 244
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=2e-23 Score=191.28 Aligned_cols=133 Identities=20% Similarity=0.132 Sum_probs=108.6
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccC
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGD 102 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 102 (363)
.++|++|+....+.+||.|++.+...... ... ..+.++++.+||.+..++.++
T Consensus 62 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~------------~~~--------------~~~~~~l~~l~l~~~~~~~~~- 114 (246)
T cd03237 62 TVSYKPQYIKADYEGTVRDLLSSITKDFY------------THP--------------YFKTEIAKPLQIEQILDREVP- 114 (246)
T ss_pred eEEEecccccCCCCCCHHHHHHHHhhhcc------------ccH--------------HHHHHHHHHcCCHHHhhCChh-
Confidence 79999999887888999999875422110 000 025667889999877776655
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 103 AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 103 ~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++++.++|||+++|+. ..+..+||++++|
T Consensus 115 ----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l 189 (246)
T cd03237 115 ----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVF 189 (246)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999865688999988765 4788899999999
Q ss_pred cCCeE
Q 044411 183 AEGKI 187 (363)
Q Consensus 183 ~~G~i 187 (363)
+++..
T Consensus 190 ~~~~~ 194 (246)
T cd03237 190 EGEPS 194 (246)
T ss_pred cCCCe
Confidence 66433
No 245
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.90 E-value=9.5e-24 Score=220.37 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=111.2
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.++.+|||+|++.+|+ -|++||+.++.. . .. +++.++++..|+
T Consensus 525 lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~-~---~~-------------------------e~i~~al~~a~l~~~i~~l 574 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMS-GSIFENIAGGAP-L---TL-------------------------DEAWEAARMAGLAEDIRAM 574 (686)
T ss_pred HHhccEEEccCCccCc-ccHHHHHhcCCC-C---CH-------------------------HHHHHHHHHcCcHHHHHhc
Confidence 4678999999998886 599999987532 0 00 013333444443
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++ ++|+|+++|++ +.
T Consensus 575 p~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~ 647 (686)
T TIGR03797 575 PMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--ST 647 (686)
T ss_pred cccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HH
Confidence 3456788875 35679999999999999999999999999999999999999999999875 46999989887 45
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
.+.||+|++|++|+++..|+.++
T Consensus 648 i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 648 IRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHcCCEEEEEECCEEEEECCHHH
Confidence 67799999999999999998653
No 246
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=1.3e-23 Score=195.17 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=112.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||+||+...... . . +++.+.++.+||.+..+..+
T Consensus 76 r~~i~~v~q~~~lf~-~tv~~nl~~~~~~-----~--------~----------------~~~~~~l~~~gL~~~~~~~p 125 (275)
T cd03289 76 RKAFGVIPQKVFIFS-GTFRKNLDPYGKW-----S--------D----------------EEIWKVAEEVGLKSVIEQFP 125 (275)
T ss_pred hhhEEEECCCcccch-hhHHHHhhhccCC-----C--------H----------------HHHHHHHHHcCCHHHHHhCc
Confidence 567999999999987 4999999532100 0 0 02455567777765544433
Q ss_pred cC------CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 GD------AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 g~------~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
+. .....||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. .++|||+++|++ +.+.
T Consensus 126 ~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~- 201 (275)
T cd03289 126 GQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML- 201 (275)
T ss_pred ccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-
Confidence 21 1345699999999999999999999999999999999999999999999874 378999988876 4555
Q ss_pred hhcceeeecCCeEEEecCCCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~~~ 197 (363)
.||+|++|++|++++.|+++...
T Consensus 202 ~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 202 ECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred hCCEEEEecCCeEeecCCHHHHh
Confidence 59999999999999999987543
No 247
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=1.6e-23 Score=189.56 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=110.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 99 (363)
++.++|++|++.+++ .||+||+.+........ .. ..+++++++.+|+. ...++.
T Consensus 80 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~-----------~~-------------~~~~~~~l~~~~l~~~~~~~~ 134 (225)
T PRK10247 80 RQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQ-----------PD-------------PAIFLDDLERFALPDTILTKN 134 (225)
T ss_pred HhccEEEeccccccc-ccHHHHHHhHHhhcCCC-----------hH-------------HHHHHHHHHHcCCChHHhcCC
Confidence 457999999988887 59999998754322100 00 01367789999995 455655
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||+++|++. ++ ..||++
T Consensus 135 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i 207 (225)
T PRK10247 135 I-----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKV 207 (225)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEE
Confidence 4 4699999999999999999999999999999999999999999999987655889999988764 55 479999
Q ss_pred eeec-CCeEEEecCC
Q 044411 180 ILMA-EGKILYHGPR 193 (363)
Q Consensus 180 ~vL~-~G~iv~~G~~ 193 (363)
++|+ ++..+.+|..
T Consensus 208 ~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 208 ITLQPHAGEMQEARY 222 (225)
T ss_pred EEEecccchHhhhhh
Confidence 9995 4555555543
No 248
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=1.8e-23 Score=210.75 Aligned_cols=150 Identities=17% Similarity=0.277 Sum_probs=118.0
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 96 (363)
++.++|++|+. .+++.+||+||+.++.... ... ........ ...+++++++.+++.+ ..
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~-~~~----~~~~~~~~------------~~~~~~~~l~~~~l~~~~~ 397 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS-FCF----KMRIDAAA------------ELQIIGSAIQRLKVKTASP 397 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh-hcc----CCcCCHHH------------HHHHHHHHHHhcCccCCCc
Confidence 45699999995 5889999999998753210 000 00000000 0124788899999964 56
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. +++.++|
T Consensus 398 ~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~-~~~~~~~ 470 (500)
T TIGR02633 398 FLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSEL-AEVLGLS 470 (500)
T ss_pred cCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhC
Confidence 76665 59999999999999999999999999999999999999999999999864 88999988765 5889999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..++.+
T Consensus 471 d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 471 DRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999877653
No 249
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=2e-23 Score=195.26 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=123.6
Q ss_pred eEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 23 LSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.|+++||++. +-|-.|+...+.-..+++.. +.+.. +..++.++|+.+|+.+....+
T Consensus 94 ~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~~------------Ar~r~lelL~~VgI~~p~~rl- 151 (534)
T COG4172 94 KIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG---------LSRAA------------ARARALELLELVGIPEPEKRL- 151 (534)
T ss_pred ceEEEecccccccCcHhHHHHHHHHHHHHHhc---------ccHHH------------HHHHHHHHHHHcCCCchhhhh-
Confidence 6999999974 66778888777655554321 11111 123588899999998765544
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.++++|||||||||.||+||+++|++|+.||||++||...+.+|+++|+++.++.|++++++||+. .-+-.++|||+
T Consensus 152 -~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~ 229 (534)
T COG4172 152 -DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVY 229 (534)
T ss_pred -hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEE
Confidence 3578999999999999999999999999999999999999999999999999999999999988765 58889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
||.+|++++.|+.+
T Consensus 230 VM~~G~ivE~~~t~ 243 (534)
T COG4172 230 VMQHGEIVETGTTE 243 (534)
T ss_pred EEeccEEeecCcHH
Confidence 99999999999877
No 250
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.7e-23 Score=192.70 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=113.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc----ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD----ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 96 (363)
++.++|++|++.+++. ||+||+.+.....+... .... .+++.++++.+++. +..
T Consensus 98 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~---------~~~~------------~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 98 RMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKR---------RSIL------------EERVENALRNAALWDEVKDRL 155 (265)
T ss_pred hccEEEEccCCcCCcc-hHHHHHHhHHHHcCCCh---------HHHH------------HHHHHHHHHHcCCchhhhHHH
Confidence 5679999999998886 99999987643221100 0000 01356667777764 223
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+.. ...||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||+++|+. +++.++|
T Consensus 156 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~-~~~~~~~ 227 (265)
T PRK14252 156 GDL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNM-QQAARVS 227 (265)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCH-HHHHHhC
Confidence 333 456999999999999999999999999999999999999999999999864 57898888765 5788899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|+++..|+.+.
T Consensus 228 d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 228 DYTAYMYMGELIEFGATDT 246 (265)
T ss_pred CEEEEEECCEEEEeCCHHH
Confidence 9999999999999887653
No 251
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.9e-24 Score=191.69 Aligned_cols=144 Identities=20% Similarity=0.273 Sum_probs=105.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|++.+++. ||.||+.++.... . ...... .... ..++..++.+ |+....+.
T Consensus 76 ~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~---~-~~~~~~---~~~~------------~~l~~~~~~~~~~~~~~~~~ 135 (229)
T cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRLGRPNA---T-DEEVIE---AAKE------------AGAHDFIMKLPNGYDTVLGE 135 (229)
T ss_pred hhhEEEecCCchhhhh-HHHHHHhccCCCC---C-HHHHHH---HHHH------------hChHHHHHhCcccccCHhhc
Confidence 4569999999888775 9999998753211 0 000000 0000 0123334433 44433333
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++.|||||||||+||++|+.+|+++||||||+|||+.++..+++.|++++ + +.|||+++|++. ++ ..||+
T Consensus 136 -----~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~ 206 (229)
T cd03254 136 -----NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADK 206 (229)
T ss_pred -----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCE
Confidence 345799999999999999999999999999999999999999999999985 3 789999998774 55 46999
Q ss_pred eeeecCCeEEEecCC
Q 044411 179 IILMAEGKILYHGPR 193 (363)
Q Consensus 179 v~vL~~G~iv~~G~~ 193 (363)
+++|++|++++.|+.
T Consensus 207 i~~l~~g~~~~~~~~ 221 (229)
T cd03254 207 ILVLDDGKIIEEGTH 221 (229)
T ss_pred EEEEeCCeEEEeCCH
Confidence 999999999987764
No 252
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=215.26 Aligned_cols=143 Identities=21% Similarity=0.293 Sum_probs=113.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.++||||++.+|+ -|++||+.++..- .... +++.++++..| +
T Consensus 415 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~---~~~~------------------------~~i~~al~~~~l~~~i~~l 466 (582)
T PRK11176 415 LRNQVALVSQNVHLFN-DTIANNIAYARTE---QYSR------------------------EQIEEAARMAYAMDFINKM 466 (582)
T ss_pred HHhhceEEccCceeec-chHHHHHhcCCCC---CCCH------------------------HHHHHHHHHhCcHHHHHhc
Confidence 4678999999988886 6999999875210 0000 01333344443 4
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+...+++.|+++.+ ++|+|+++|++ ..
T Consensus 467 p~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~ 541 (582)
T PRK11176 467 DNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--ST 541 (582)
T ss_pred ccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HH
Confidence 4556888886 3567999999999999999999999999999999999999999999998753 68999999877 46
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
.+.||+|++|++|+++..|+.++
T Consensus 542 ~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 542 IEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHhCCEEEEEECCEEEEeCCHHH
Confidence 77899999999999999998653
No 253
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=3.1e-23 Score=184.52 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=107.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.+..... . ..+++++++.+|+.+..++.+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---------------~-------------~~~~~~~l~~~~l~~~~~~~~ 123 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADH---------------S-------------DEQVEEALARVGLNGFEDRPV 123 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccc---------------c-------------HHHHHHHHHHcCChhhhcCch
Confidence 467999999999999999999998742100 0 013677899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|+|+++|++. +....|++++
T Consensus 124 ~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~ 196 (201)
T cd03231 124 A-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGAREL 196 (201)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeE
Confidence 4 5999999999999999999999999999999999999999999999875 4789999998775 6777999998
Q ss_pred ee
Q 044411 181 LM 182 (363)
Q Consensus 181 vL 182 (363)
++
T Consensus 197 ~~ 198 (201)
T cd03231 197 DL 198 (201)
T ss_pred ec
Confidence 87
No 254
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=8.8e-24 Score=224.60 Aligned_cols=148 Identities=24% Similarity=0.346 Sum_probs=130.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+||+||.|.+++.+|.+|++.+.+++++.... +- .+.++.+++.+||.+.+++.
T Consensus 638 ~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~----------di------------~~~v~~ll~~~~L~~~~~~~ 695 (885)
T KOG0059|consen 638 VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRS----------DI------------GSAIEKLLRLVGLGPYANKQ 695 (885)
T ss_pred hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChh----------HH------------HHHHHHHHHHcCChhhhccc
Confidence 567899999999999999999999999998864321 00 11378899999999999998
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++. +|||+|+|+++|.||+.+|++++|||||+|+||.+++.++++++++.+ +|+.+|+|+| .++|+..+|||+
T Consensus 696 ~~~-----ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSH-sMeE~EaLCtR~ 768 (885)
T KOG0059|consen 696 VRT-----YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSH-SMEEAEALCTRT 768 (885)
T ss_pred hhh-----CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcC-CHHHHHHHhhhh
Confidence 775 999999999999999999999999999999999999999999999987 4558888775 668999999999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
.+|.+|++...|++++.
T Consensus 769 aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 769 AIMVIGQLRCIGSPQEL 785 (885)
T ss_pred heeecCeeEEecChHHH
Confidence 99999999999998744
No 255
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=3.9e-23 Score=188.61 Aligned_cols=145 Identities=21% Similarity=0.272 Sum_probs=106.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|++.+++ .||+||+.+...... .. .. ..... ...+.+.++.+ ++....+.
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~---~~---~~~~~---------~~~~~~~~~~l~~~~~~~~~~ 135 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDAT----DE---EV---EEAAK---------KANIHDFIMSLPDGYDTLVGE 135 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCCC----HH---HH---HHHHH---------HcChHHHHHhhccccceeecc
Confidence 456999999988776 699999987532110 00 00 00000 00123333333 44443333
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ .|.|||+++|++. ++. .||+
T Consensus 136 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~ 206 (238)
T cd03249 136 R-----GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADL 206 (238)
T ss_pred C-----CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCE
Confidence 3 45699999999999999999999999999999999999999999999986 4789999988764 555 8999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+.+
T Consensus 207 v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 207 IAVLQNGQVVEQGTHD 222 (238)
T ss_pred EEEEECCEEEEeCCHH
Confidence 9999999999887654
No 256
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.5e-23 Score=191.94 Aligned_cols=149 Identities=21% Similarity=0.337 Sum_probs=114.1
Q ss_pred eeEEEEccccccC--CCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 22 KLSAYVSQYDLHI--PEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~~~~--~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+.++|++|++.+. ...++++++.++.... ... . ...... ...++.++++.+||.+..++.
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~~----~-~~~~~~------------~~~~~~~~l~~~gl~~~~~~~ 139 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH-MGW----L-RRAKKR------------DRQIVTAALARVDMVEFRHRQ 139 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccc-ccc----c-cCCCHH------------HHHHHHHHHHHcCChhHhcCC
Confidence 4699999987653 2357889886542110 000 0 000000 011367789999998887776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++ +++.++||++
T Consensus 140 ~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v 212 (272)
T PRK15056 140 IG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYT 212 (272)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEE
Confidence 65 5999999999999999999999999999999999999999999999976 488999988765 4788999999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
+++ +|++++.|+++..
T Consensus 213 ~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 213 VMV-KGTVLASGPTETT 228 (272)
T ss_pred EEE-CCEEEeecCHHhc
Confidence 877 8999999887654
No 257
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=2.1e-23 Score=218.59 Aligned_cols=140 Identities=24% Similarity=0.217 Sum_probs=110.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.+|||+|++.+|+ .|++||+.++..- ... +++.++++..| +
T Consensus 551 lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~~----~~~------------------------~~i~~al~~~~l~~~i~~l 601 (710)
T TIGR03796 551 LANSVAMVDQDIFLFE-GTVRDNLTLWDPT----IPD------------------------ADLVRACKDAAIHDVITSR 601 (710)
T ss_pred HHhheeEEecCChhhh-ccHHHHhhCCCCC----CCH------------------------HHHHHHHHHhCCHHHHHhC
Confidence 4788999999988885 6999999874210 000 01333344333 3
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
....||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+...+.+.|++ .++|+|+++|++. .
T Consensus 602 p~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~ 674 (710)
T TIGR03796 602 PGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--T 674 (710)
T ss_pred cCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--H
Confidence 3456777875 4567999999999999999999999999999999999999999999875 3689999998863 5
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||+|++|++|+++..|+.++
T Consensus 675 i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 675 IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHhCCEEEEEeCCEEEEecCHHH
Confidence 56799999999999999998653
No 258
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=6.5e-23 Score=188.24 Aligned_cols=152 Identities=19% Similarity=0.154 Sum_probs=112.5
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 100 (363)
+.++|++|++.+++.+|+.+++.+........... ...... +...++++.++.+++. +..++.+
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~ 142 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ----EPLDRF-----------DFQDLMEEKIALLKMPEDLLTRSV 142 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhccccc----ccchHH-----------HHHHHHHHHHHHcCCChhhcccCC
Confidence 46999999998898888877765432100000000 000000 0012467788999995 4445443
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh-hcce
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL-FDDI 179 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~-~D~v 179 (363)
. +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .++|||+++|++. .+... +|++
T Consensus 143 ~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~-~~~~~~~d~i 216 (248)
T PRK09580 143 N----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQR-ILDYIKPDYV 216 (248)
T ss_pred C----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHhhhCCEE
Confidence 2 25999999999999999999999999999999999999999999999875 4789999988764 66666 8999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 217 ~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 217 HVLYQGRIVKSGDFT 231 (248)
T ss_pred EEEECCeEEEeCCHH
Confidence 999999999888654
No 259
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=2.6e-23 Score=212.68 Aligned_cols=141 Identities=27% Similarity=0.364 Sum_probs=114.2
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-----
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----- 94 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----- 94 (363)
.++.++||+|++.+|+ -|++||+.++..-. .. +++.++++..++.+
T Consensus 412 ~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~------------~~----------------~~i~~al~~~~l~~~i~~p 462 (574)
T PRK11160 412 LRQAISVVSQRVHLFS-ATLRDNLLLAAPNA------------SD----------------EALIEVLQQVGLEKLLEDD 462 (574)
T ss_pred HHhheeEEcccchhhc-ccHHHHhhcCCCcc------------CH----------------HHHHHHHHHcCCHHHHcCc
Confidence 4678999999988886 59999998753100 00 12455566666643
Q ss_pred -cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 95 -CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 95 -~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
..||.+|+ ....||||||||++|||+|+.+|++|+|||||++||+.+...+.+.|+++. .++|+|+++|++. . .
T Consensus 463 ~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~-~-~ 537 (574)
T PRK11160 463 KGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT-G-L 537 (574)
T ss_pred cccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh-H-H
Confidence 45778875 356799999999999999999999999999999999999999999999885 3789999998874 3 4
Q ss_pred hhhcceeeecCCeEEEecCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~ 194 (363)
..||+|++|++|+++..|+.+
T Consensus 538 ~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 538 EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HhCCEEEEEeCCeEEEeCCHH
Confidence 579999999999999998865
No 260
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.2e-23 Score=178.98 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=122.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.+.-+.+||+..+-...||+|.+.++....+.+... ++ ..+.++.+|...++.+.+.+..
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~---------~e-----------~~~i~~~ala~~d~~~la~R~y 133 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREP---------EE-----------DERIAAQALAATDLSGLAGRDY 133 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCc---------hh-----------hHHHHHHHHHHcChhhhhccch
Confidence 356788999999888899999999986544322110 00 0112677888888888876544
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhC------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVG------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
..|||||||||.+||.|++ ++++||||||||.||...+..++++.++++++ |..|+++.|+.+ -+..
T Consensus 134 -----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLN-LAA~ 206 (259)
T COG4559 134 -----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLN-LAAQ 206 (259)
T ss_pred -----hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccch-HHHH
Confidence 4699999999999999975 44599999999999999999999999999985 678888877654 7888
Q ss_pred hhcceeeecCCeEEEecCCCCCCCCCChH
Q 044411 175 LFDDIILMAEGKILYHGPRKVCPDRKAVA 203 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~~~~~~~~~ 203 (363)
+||||++|++||++..|++++....+...
T Consensus 207 YaDrivll~~Grv~a~g~p~~vlt~Etl~ 235 (259)
T COG4559 207 YADRIVLLHQGRVIASGSPQDVLTDETLE 235 (259)
T ss_pred hhheeeeeeCCeEeecCCHHHhcCHHHHH
Confidence 99999999999999999987554433333
No 261
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=3.9e-22 Score=206.33 Aligned_cols=145 Identities=18% Similarity=0.318 Sum_probs=120.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+|+.||+.+.....+.. ..+. ..++.++++.+||.+..++.+
T Consensus 85 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~lgl~~~~~~~~ 142 (648)
T PRK10535 85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLE----------RKQR------------LLRAQELLQRLGLEDRVEYQP 142 (648)
T ss_pred hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHCCChhhhcCCc
Confidence 357999999999999999999998754322100 0011 124778899999998877766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||+||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+++++|++. . .+.||+++
T Consensus 143 ~-----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~-~-~~~~d~i~ 214 (648)
T PRK10535 143 S-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ-V-AAQAERVI 214 (648)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH-H-HHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999875 4889999988764 4 45799999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 215 ~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 215 EIRDGEIVRNPPAQE 229 (648)
T ss_pred EEECCEEEeecCccc
Confidence 999999999998763
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.89 E-value=2.8e-23 Score=217.13 Aligned_cols=141 Identities=21% Similarity=0.329 Sum_probs=112.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.++||+|++.+|+ .|++||+.++..-. . .+ ++.++++..+ +
T Consensus 537 lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~~---~-~~------------------------~i~~a~~~~~l~~~i~~l 587 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFY-GTLRDNIALGAPYA---D-DE------------------------EILRAAELAGVTEFVRRH 587 (694)
T ss_pred HHhccEEECCChhhhh-hhHHHHHhCCCCCC---C-HH------------------------HHHHHHHHcChHHHHHhC
Confidence 4678999999998887 59999998752100 0 00 1223333333 3
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..||.+|+ ....||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ .
T Consensus 588 p~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~--~ 662 (694)
T TIGR03375 588 PDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTS--L 662 (694)
T ss_pred cccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--H
Confidence 4556788875 4567999999999999999999999999999999999999999999998863 689999998874 5
Q ss_pred HhhhcceeeecCCeEEEecCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
.+.||+|++|++|++++.|+.+
T Consensus 663 ~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 663 LDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHhCCEEEEEeCCEEEeeCCHH
Confidence 6789999999999999998754
No 263
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=2.8e-23 Score=212.37 Aligned_cols=151 Identities=26% Similarity=0.279 Sum_probs=115.2
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
..++.++||+|++.+|. -||+||+.++..-. . .+... ..-+.. .+.+.++ .+++..||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~a---t-~eei~---~a~k~a------------~~~d~I~--~lp~g~dt 457 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGRPDA---T-DEEIE---EALKLA------------NAHEFIA--NLPDGYDT 457 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCCCCC---C-HHHHH---HHHHHh------------ChHHHHH--hCcccccc
Confidence 35788999999999888 89999999864210 0 00000 000000 1223333 33557899
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+|+ ....||||||||++||||++.+|++|+||||||+||+.+...|.+.++++.+ ++|+++++|.++ .+. .||+
T Consensus 458 ~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRls-ti~-~aD~ 532 (567)
T COG1132 458 IVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS-TIK-NADR 532 (567)
T ss_pred eecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHh-HHH-hCCE
Confidence 9983 5567999999999999999999999999999999999999999999998763 578888888874 444 4999
Q ss_pred eeeecCCeEEEecCCCCC
Q 044411 179 IILMAEGKILYHGPRKVC 196 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~ 196 (363)
|++|++|++++.|+.++.
T Consensus 533 IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 533 IIVLDNGRIVERGTHEEL 550 (567)
T ss_pred EEEEECCEEEEecCHHHH
Confidence 999999999999987643
No 264
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=6.8e-23 Score=184.08 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=109.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.+....++. .. ..++.++++.++|.+..++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~-----------~~--------------~~~~~~~l~~~~l~~~~~~~~ 135 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGR-----------RA--------------KQMPGSALAIVGLAGYEDTLV 135 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCC-----------cH--------------HHHHHHHHHHcCChhhccCCh
Confidence 34689999999999999999999875432110 00 013567789999987777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|.|+|+++|+. .++.++||+++
T Consensus 136 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~ 208 (214)
T PRK13543 136 R-----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRML 208 (214)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEE
Confidence 4 5999999999999999999999999999999999999999999999876 478999988766 48899999999
Q ss_pred eecC
Q 044411 181 LMAE 184 (363)
Q Consensus 181 vL~~ 184 (363)
+++.
T Consensus 209 ~l~~ 212 (214)
T PRK13543 209 TLEA 212 (214)
T ss_pred EEee
Confidence 9864
No 265
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=9.8e-23 Score=188.51 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=115.7
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccC
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGD 102 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 102 (363)
.++|++|...+.+.+|+.||+.+.....+.. ..+. ...++.+++.+++.+..++.++
T Consensus 86 ~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~- 142 (264)
T PRK13546 86 EVSVIAISAGLSGQLTGIENIEFKMLCMGFK----------RKEI------------KAMTPKIIEFSELGEFIYQPVK- 142 (264)
T ss_pred EEeEEecccCCCCCCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhcCCcc-
Confidence 3578888887888999999998754322110 0000 0125667888899887776554
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 103 AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 103 ~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
.|||||+|||+||++|+.+|++|||||||+|||+.++..+++.|.++++ .|.|||+++|+. .++.++||++++|
T Consensus 143 ----~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~-~~i~~~~d~i~~l 216 (264)
T PRK13546 143 ----KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNL-GQVRQFCTKIAWI 216 (264)
T ss_pred ----cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHHcCEEEEE
Confidence 5999999999999999999999999999999999999999999999865 588999988765 4788899999999
Q ss_pred cCCeEEEecCCCC
Q 044411 183 AEGKILYHGPRKV 195 (363)
Q Consensus 183 ~~G~iv~~G~~~~ 195 (363)
++|+++..|+.+.
T Consensus 217 ~~G~i~~~g~~~~ 229 (264)
T PRK13546 217 EGGKLKDYGELDD 229 (264)
T ss_pred ECCEEEEeCCHHH
Confidence 9999998887653
No 266
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=7.3e-23 Score=185.13 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=106.5
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 100 (363)
+.++|++|++.+++.+||.||+.+.....+.. .... ..++.++++.+|+.+ ..+..+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 147 (224)
T TIGR02324 90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVP----------REAA------------RARARELLARLNIPERLWHLPP 147 (224)
T ss_pred cceEEEecccccCCCccHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhhhCCc
Confidence 46999999999999999999998754321100 0000 113677899999975 345444
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++ ..+..+||+++
T Consensus 148 -----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~-~~~~~~~d~i~ 220 (224)
T TIGR02324 148 -----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDE-EVRELVADRVM 220 (224)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcceeE
Confidence 46999999999999999999999999999999999999999999999875 488999998774 46778999998
Q ss_pred eec
Q 044411 181 LMA 183 (363)
Q Consensus 181 vL~ 183 (363)
.+.
T Consensus 221 ~~~ 223 (224)
T TIGR02324 221 DVT 223 (224)
T ss_pred ecC
Confidence 763
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=2.2e-23 Score=209.62 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=96.3
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+++++++.+||.+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.||
T Consensus 115 ~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tv 188 (490)
T PRK10938 115 RCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITL 188 (490)
T ss_pred HHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeE
Confidence 47788999999887777665 5999999999999999999999999999999999999999999999976 48899
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEEEecCCCC
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
|+++|+. ..+.++||++++|++|+++..|+++.
T Consensus 189 ii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 189 VLVLNRF-DEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred EEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9988765 58889999999999999999887653
No 268
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.8e-23 Score=192.88 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=114.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++ .||+||+.+.......... ........... .+ ....++.++++.+++.+......
T Consensus 125 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~-~~~~~~~~~~~-------~~-~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 125 RKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINT-GLLARLLGRDD-------KD-AEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred hhceEEEccCCcccc-ccHHHHHHhHHhhcccccc-cccccccccCc-------hH-HHHHHHHHHHHHcCCchhhhHHh
Confidence 467999999988887 5999999986432210000 00000000000 00 00124777888888853222211
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce-
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI- 179 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v- 179 (363)
+..++.|||||||||+||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+.++||++
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~ 270 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTA 270 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEE
Confidence 233467999999999999999999999999999999999999999999999975 37899988776 4788899997
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 271 ~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 271 VFLTGGELVEYDDTD 285 (305)
T ss_pred EEecCCEEEEeCCHH
Confidence 578999999988765
No 269
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.8e-23 Score=199.40 Aligned_cols=150 Identities=19% Similarity=0.266 Sum_probs=114.3
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.||||||+..+|. -||.+|+.++..-. ..+...+.+ +..+ ..+.+ ..+++..+|.
T Consensus 423 lR~~Ig~VPQd~~LFn-dTIl~NI~YGn~sa----s~eeV~e~~---k~a~------------~hd~i--~~l~~GY~T~ 480 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFN-DTILYNIKYGNPSA----SDEEVVEAC---KRAG------------LHDVI--SRLPDGYQTL 480 (591)
T ss_pred hhhheeEeCCcccccc-hhHHHHhhcCCCCc----CHHHHHHHH---HHcC------------cHHHH--Hhccccchhh
Confidence 5788999999877765 59999999863211 011111111 1110 11222 2455667888
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
||+ ....|||||||||+||||++.+|+|++||||||.||..+..++++.+.+.. .++|+|++.|.. ....-||+|
T Consensus 481 VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI 555 (591)
T KOG0057|consen 481 VGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKI 555 (591)
T ss_pred Hhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEE
Confidence 886 445699999999999999999999999999999999999999999999843 589999998765 577889999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
++|++|++...|+.++.
T Consensus 556 ~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 556 IVLDNGTVKEYGTHSEL 572 (591)
T ss_pred EEEECCeeEEeccHHHH
Confidence 99999999999987643
No 270
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.89 E-value=2.8e-23 Score=217.59 Aligned_cols=142 Identities=25% Similarity=0.297 Sum_probs=111.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.+|||+|++.+|+. |++||+.++.... ... +++.++++..+ +
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~---~~~------------------------~~i~~a~~~a~l~~~i~~l 597 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGAKEN---VSQ------------------------DEIWAACEIAEIKDDIENM 597 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccCCCC---CCH------------------------HHHHHHHHHhCCHHHHHhc
Confidence 46789999999988865 9999998853110 000 01223333333 3
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
....||.+|+ ....||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++ .++|+|+++|+++ .
T Consensus 598 p~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~ 671 (708)
T TIGR01193 598 PLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--V 671 (708)
T ss_pred ccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--H
Confidence 4456788875 45679999999999999999999999999999999999999999999875 2689999888874 5
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||+|++|++|+++..|+.++
T Consensus 672 ~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 672 AKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHcCCEEEEEECCEEEEECCHHH
Confidence 67899999999999999998653
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.2e-23 Score=186.57 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=105.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|+..+++ .||.||+.+..... ..... ...... ..+.+.++.+ ++....+.
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~----~~~~~---~~~~~~------------~~l~~~~~~l~~~~~~~~~~ 133 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPDA----TDEEV---IEAAKA------------AQIHDKIMRFPDGYDTIVGE 133 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCCC----CHHHH---HHHHHH------------cCcHHHHHhccccccchhhc
Confidence 456999999988775 69999998753210 00000 000000 0123333433 34333333
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++.|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++++ |.|||+++|++. .+. .||+
T Consensus 134 -----~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~d~ 204 (236)
T cd03253 134 -----RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TIV-NADK 204 (236)
T ss_pred -----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHH-hCCE
Confidence 2457999999999999999999999999999999999999999999999864 789999988764 554 5999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+.+
T Consensus 205 ~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 205 IIVLKDGRIVERGTHE 220 (236)
T ss_pred EEEEECCEEEeeCCHH
Confidence 9999999999877643
No 272
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.9e-23 Score=208.60 Aligned_cols=151 Identities=19% Similarity=0.304 Sum_probs=118.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+++.||+|.|+|.+|. -||+|||.|+.. . .. .+... ...+.+ .+.+-+ .++++..||.
T Consensus 540 lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-~-~t--~e~i~---~AAk~A------------Nah~FI--~~~p~gY~T~ 597 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFS-GSIRENIAYGLD-N-AT--DEEIE---AAAKMA------------NAHEFI--TNFPDGYNTV 597 (716)
T ss_pred HHHHeeeeeccceeec-ccHHHHHhcCCC-C-CC--HHHHH---HHHHHh------------ChHHHH--HhCccccccc
Confidence 4789999999999887 599999999754 1 00 00000 000000 122222 3678889999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
||+ ....||||||||++|||||+.+|+||||||.||+||..+...+.+.|.++.+ ++|||++.|.. ...+.+|+|
T Consensus 598 VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~I 672 (716)
T KOG0058|consen 598 VGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQI 672 (716)
T ss_pred cCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEE
Confidence 996 4557999999999999999999999999999999999999999999999875 58999887765 466789999
Q ss_pred eeecCCeEEEecCCCCCC
Q 044411 180 ILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~~ 197 (363)
+++++|++++.|+.++..
T Consensus 673 vvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELL 690 (716)
T ss_pred EEEcCCeEEecccHHHHh
Confidence 999999999999776543
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=6e-23 Score=209.35 Aligned_cols=138 Identities=21% Similarity=0.204 Sum_probs=115.3
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
..++|++|+..+++.+||+|++.+...... .. ..++++++.+||.+..++.++
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~-------------~~--------------~~~~~~L~~l~l~~~~~~~~~ 452 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDLG-------------SS--------------YYKSEIIKPLQLERLLDKNVK 452 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhcC-------------hH--------------HHHHHHHHHCCCHHHHhCCcc
Confidence 358999999888899999999976421100 00 025678999999887777765
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|+++|+. ..+..+||++++
T Consensus 453 -----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrviv 526 (590)
T PRK13409 453 -----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMV 526 (590)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999876688999988765 588889999999
Q ss_pred ecCCeEEEecCC
Q 044411 182 MAEGKILYHGPR 193 (363)
Q Consensus 182 L~~G~iv~~G~~ 193 (363)
|+ |++...|..
T Consensus 527 l~-~~~~~~g~~ 537 (590)
T PRK13409 527 FE-GEPGKHGHA 537 (590)
T ss_pred Ec-Ccceeeeec
Confidence 95 588777774
No 274
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=8.7e-23 Score=182.05 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=106.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+.....+. .. ..+++++++.+||.+..++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------------~~-------------~~~~~~~l~~~gl~~~~~~~~ 127 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGP------------GD-------------DEALWEALAQVGLAGFEDVPV 127 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCc------------cH-------------HHHHHHHHHHcCCHHHhhCCh
Confidence 45699999999999999999999876432110 00 014778899999987777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|||+++|++. .+....+|++
T Consensus 128 ~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~i~~~~~~~~ 200 (204)
T PRK13538 128 R-----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDL-PVASDKVRKL 200 (204)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChh-hhccCCceEE
Confidence 4 5999999999999999999999999999999999999999999999875 4789999988764 6666666777
Q ss_pred ee
Q 044411 181 LM 182 (363)
Q Consensus 181 vL 182 (363)
++
T Consensus 201 ~~ 202 (204)
T PRK13538 201 RL 202 (204)
T ss_pred ec
Confidence 66
No 275
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=7.5e-23 Score=208.22 Aligned_cols=149 Identities=22% Similarity=0.293 Sum_probs=111.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|++.+++. |++||+.+.... ...+...+ ..+. ...++.++.+ ++..||.
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~----~~~~~~~~---~~~~------------~~~~~~i~~l--~~gl~t~ 447 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFGEN----ADPEKIIE---AAKL------------AGVHELILRL--PDGYDTV 447 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccCCC----CCHHHHHH---HHHH------------hChHHHHHhC--ccccccc
Confidence 45689999999988875 999999753210 00000000 0000 0133444443 3334566
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+ ....||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.. .++|+|+++|++. ..+.||+|
T Consensus 448 ~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i 523 (544)
T TIGR01842 448 IGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKI 523 (544)
T ss_pred cCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEE
Confidence 664 4567999999999999999999999999999999999999999999998864 4789999998874 45789999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+.+
T Consensus 524 ~~l~~G~i~~~g~~~ 538 (544)
T TIGR01842 524 LVLQDGRIARFGERD 538 (544)
T ss_pred EEEECCEEEeeCCHH
Confidence 999999999998754
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=8.6e-23 Score=209.69 Aligned_cols=142 Identities=20% Similarity=0.247 Sum_probs=111.8
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.++||+|++.+|+ -|++||+.++..- ...+ ++..+++..+ +
T Consensus 407 ~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~----~~d~------------------------~i~~al~~~~l~~~i~~l 457 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN-RSIEDNIRVGRPD----ATDE------------------------EMRAAAERAQAHDFIERK 457 (588)
T ss_pred HHhheEEEecCccccc-ccHHHHHhcCCCC----CCHH------------------------HHHHHHHHhCHHHHHHhC
Confidence 4578999999998886 5999999875210 0000 1233333333 3
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. .++|+|+++|++ ..
T Consensus 458 p~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~ 532 (588)
T PRK13657 458 PDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--ST 532 (588)
T ss_pred cccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HH
Confidence 3446777775 356799999999999999999999999999999999999999999999875 368999999887 45
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
.+.||+|++|++|+++..|+.++
T Consensus 533 ~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 533 VRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHhCCEEEEEECCEEEEeCCHHH
Confidence 67899999999999999888653
No 277
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.89 E-value=5e-23 Score=210.83 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=113.2
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.++.++|++|++.+|+ -|++|||.++..-. . .. +++.++++..|+
T Consensus 404 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~---~--------~~----------------~~i~~~l~~~~l~~~i~~l 455 (571)
T TIGR02203 404 LRRQVALVSQDVVLFN-DTIANNIAYGRTEQ---A--------DR----------------AEIERALAAAYAQDFVDKL 455 (571)
T ss_pred HHhhceEEccCccccc-ccHHHHHhcCCCCC---C--------CH----------------HHHHHHHHHcChHHHHHhC
Confidence 3567999999987775 59999998753100 0 00 024444555444
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+. .+.||||||||++|||+++.+|++++|||||++||+.+...+++.|+++++ ++|+|+++|++ ..
T Consensus 456 p~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~--~~ 530 (571)
T TIGR02203 456 PLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRL--ST 530 (571)
T ss_pred cCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhh--HH
Confidence 34467778753 567999999999999999999999999999999999999999999998753 68999999887 56
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||+|++|++|+++..|+.++
T Consensus 531 ~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 531 IEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHhCCEEEEEeCCEEEeeCCHHH
Confidence 78899999999999998888653
No 278
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-23 Score=201.39 Aligned_cols=143 Identities=25% Similarity=0.319 Sum_probs=114.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc----
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC---- 95 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---- 95 (363)
.++.+++++|...+|. -|+++||.++..- .+. +.+.++++.+||++.
T Consensus 410 ~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~------------AsD----------------Eel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 410 LRETISVLTQRVHLFS-GTLRDNLRLANPD------------ASD----------------EELWAALQQVGLEKLLESA 460 (573)
T ss_pred HHHHHhhhccchHHHH-HHHHHHHhhcCCC------------CCH----------------HHHHHHHHHcCHHHHHHhC
Confidence 4567899999766664 6999999875311 000 125556666666543
Q ss_pred ---ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 96 ---ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 96 ---~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+|.+|+ ..+.||||||||++|||+|+++.++++|||||.|||+.+..++++.|.+.++ |+|+|++||+.. -
T Consensus 461 p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~ 535 (573)
T COG4987 461 PDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--G 535 (573)
T ss_pred hhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--c
Confidence 4556664 5678999999999999999999999999999999999999999999998764 899999998875 3
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
.+.||+|++|++|+++.+|..++.
T Consensus 536 le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 536 LERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HhhcCEEEEEECCeeeecCCHHhh
Confidence 568999999999999999987654
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=8.4e-23 Score=184.29 Aligned_cols=137 Identities=20% Similarity=0.221 Sum_probs=103.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc---
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD--- 97 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 97 (363)
++.++|++|++.+++ .||+||+.+.... .. .++.+.++.+++.+..+
T Consensus 77 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~-----~~------------------------~~~~~~~~~~~l~~~~~~l~ 126 (221)
T cd03244 77 RSRISIIPQDPVLFS-GTIRSNLDPFGEY-----SD------------------------EELWQALERVGLKEFVESLP 126 (221)
T ss_pred hhhEEEECCCCcccc-chHHHHhCcCCCC-----CH------------------------HHHHHHHHHhCcHHHHHhcc
Confidence 567999999988776 6999999643110 00 01233344444433221
Q ss_pred ----ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 98 ----TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 98 ----~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
+.. +..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.
T Consensus 127 ~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~ 202 (221)
T cd03244 127 GGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII 202 (221)
T ss_pred ccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh
Confidence 111 124567999999999999999999999999999999999999999999999863 578999888764 555
Q ss_pred hhhcceeeecCCeEEEecC
Q 044411 174 DLFDDIILMAEGKILYHGP 192 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~ 192 (363)
.||++++|++|++++.|+
T Consensus 203 -~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 203 -DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred -hCCEEEEEECCeEEecCC
Confidence 599999999999998875
No 280
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=7.8e-23 Score=179.11 Aligned_cols=106 Identities=25% Similarity=0.418 Sum_probs=93.4
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 97 (363)
++.++|++|+. .+++.+|++||+.+..
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-------------------------------------------------- 103 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSS-------------------------------------------------- 103 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHh--------------------------------------------------
Confidence 45799999984 5788899999986521
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|+|+++|++ +++.++||
T Consensus 104 ---------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d 172 (182)
T cd03215 104 ---------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCD 172 (182)
T ss_pred ---------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCC
Confidence 0799999999999999999999999999999999999999999999875 478999988765 58889999
Q ss_pred ceeeecCCeE
Q 044411 178 DIILMAEGKI 187 (363)
Q Consensus 178 ~v~vL~~G~i 187 (363)
++++|++|++
T Consensus 173 ~v~~l~~G~i 182 (182)
T cd03215 173 RILVMYEGRI 182 (182)
T ss_pred EEEEecCCcC
Confidence 9999999974
No 281
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.6e-22 Score=180.75 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=99.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++ .||+||+.+... . . . + ++.+.++ + +
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~~~l~~~~~---~--~--------~-~---------------~~~~~l~---~----~--- 120 (207)
T cd03369 81 RSSLTIIPQDPTLFS-GTIRSNLDPFDE---Y--S--------D-E---------------EIYGALR---V----S--- 120 (207)
T ss_pred HhhEEEEecCCcccC-ccHHHHhcccCC---C--C--------H-H---------------HHHHHhh---c----c---
Confidence 467999999988776 599999964210 0 0 0 0 1222232 2 2
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
..+..|||||+||++|||+|+.+|+++||||||+|||+.++..+++.|+++. + |.|+|+++|++. .+.. ||+++
T Consensus 121 --~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~-~~~~-~d~v~ 194 (207)
T cd03369 121 --EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLR-TIID-YDKIL 194 (207)
T ss_pred --CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HHhh-CCEEE
Confidence 2345799999999999999999999999999999999999999999999984 3 789999888764 5554 99999
Q ss_pred eecCCeEEEecCC
Q 044411 181 LMAEGKILYHGPR 193 (363)
Q Consensus 181 vL~~G~iv~~G~~ 193 (363)
+|++|+++..|++
T Consensus 195 ~l~~g~i~~~g~~ 207 (207)
T cd03369 195 VMDAGEVKEYDHP 207 (207)
T ss_pred EEECCEEEecCCC
Confidence 9999999887763
No 282
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-23 Score=178.88 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=134.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.+.++.+-|+..+-..+||+|-+.|+...+..+.. .. ++...+++.++.++|++..|+..
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRl--------t~------------eD~~~I~~aieyl~L~~l~dryL 133 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRL--------TK------------EDRRIINEAIEYLHLEDLSDRYL 133 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCC--------ch------------HHHHHHHHHHHHhcccchHHHhH
Confidence 45677888988888999999999998654432210 01 11225899999999999888766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. +||||||||.-||+.++++.+.+|||||.++||......+|+.|++++++.|+||+++.|+.. .+..++|+|+
T Consensus 134 d-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IV 207 (252)
T COG4604 134 D-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIV 207 (252)
T ss_pred H-----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhhee
Confidence 4 699999999999999999999999999999999999999999999999999999999987664 8888999999
Q ss_pred eecCCeEEEecCCCCCCCCCChHHHH
Q 044411 181 LMAEGKILYHGPRKVCPDRKAVADFV 206 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~~~~~~~~~~~ 206 (363)
-|++|+++..|++++........+.+
T Consensus 208 AlK~G~vv~~G~~~eii~~~~L~eiy 233 (252)
T COG4604 208 ALKNGKVVKQGSPDEIIQPEILSEIY 233 (252)
T ss_pred eecCCEEEecCCHHHhcCHHHHHHHh
Confidence 99999999999998776655555444
No 283
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.2e-22 Score=176.57 Aligned_cols=102 Identities=28% Similarity=0.411 Sum_probs=91.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|+.||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------------------- 95 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK-------------------------------------------------------- 95 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh--------------------------------------------------------
Confidence 467999999988888889988761
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||+++
T Consensus 96 -------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~ 166 (173)
T cd03230 96 -------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVA 166 (173)
T ss_pred -------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEE
Confidence 6999999999999999999999999999999999999999999999865 78999988765 47888999999
Q ss_pred eecCCeE
Q 044411 181 LMAEGKI 187 (363)
Q Consensus 181 vL~~G~i 187 (363)
+|++|++
T Consensus 167 ~l~~g~i 173 (173)
T cd03230 167 ILNNGRI 173 (173)
T ss_pred EEeCCCC
Confidence 9999974
No 284
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.88 E-value=1e-22 Score=184.38 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=105.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|++.+++ .||+||+.++..... .. ........ ..+++.++.+ |+.+..+.
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~----~~---~~~~~~~~------------~~~~~~l~~l~~gl~~~~~~ 146 (226)
T cd03248 87 HSKVSLVGQEPVLFA-RSLQDNIAYGLQSCS----FE---CVKEAAQK------------AHAHSFISELASGYDTEVGE 146 (226)
T ss_pred HhhEEEEecccHHHh-hhHHHHhccccCCCC----HH---HHHHHHHH------------cCcHHHHHhccccccchhhc
Confidence 457999999988776 699999987532110 00 00000000 1256677888 77766555
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ +.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||+
T Consensus 147 ~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~ 217 (226)
T cd03248 147 KG-----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQ 217 (226)
T ss_pred CC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCE
Confidence 44 56999999999999999999999999999999999999999999999864 579999988764 564 5999
Q ss_pred eeeecCCeE
Q 044411 179 IILMAEGKI 187 (363)
Q Consensus 179 v~vL~~G~i 187 (363)
+++|++|++
T Consensus 218 i~~l~~g~i 226 (226)
T cd03248 218 ILVLDGGRI 226 (226)
T ss_pred EEEecCCcC
Confidence 999999974
No 285
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-22 Score=198.75 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=112.2
Q ss_pred EccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccCCcCC
Q 044411 27 VSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGDAIRR 106 (363)
Q Consensus 27 v~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 106 (363)
+.+...+.+.+||+||+.+.....+.. ..+. ..++.++++.+++.+..++.++
T Consensus 90 i~~~~~l~~~lTV~EnL~l~~~~~~~~----------~~e~------------~e~i~elLe~lgL~~~ld~~~~----- 142 (549)
T PRK13545 90 IAISSGLNGQLTGIENIELKGLMMGLT----------KEKI------------KEIIPEIIEFADIGKFIYQPVK----- 142 (549)
T ss_pred EEeccccCCCCcHHHHHHhhhhhcCCC----------HHHH------------HHHHHHHHHHcCChhHhhCCcc-----
Confidence 344455678899999998754322110 0000 0136678999999887777654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
.||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|++ .++.++||++++|++|+
T Consensus 143 ~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~Gk 220 (549)
T PRK13545 143 TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQ 220 (549)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999875 588999988765 58889999999999999
Q ss_pred EEEecCCCC
Q 044411 187 ILYHGPRKV 195 (363)
Q Consensus 187 iv~~G~~~~ 195 (363)
+++.|++++
T Consensus 221 Iv~~G~~~e 229 (549)
T PRK13545 221 VKEYGDIKE 229 (549)
T ss_pred EEEECCHHH
Confidence 999987653
No 286
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=1.9e-22 Score=179.02 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=102.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.+....... + ..++.++++.+|+.+..++.+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-------------~-------------~~~~~~~l~~~~l~~~~~~~~ 125 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGG-------------A-------------QRTIEDALAAVGLTGFEDLPA 125 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCC-------------c-------------HHHHHHHHHHcCCHHHhcCCh
Confidence 45789999998888999999999875322110 0 013677899999988777766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .|.|+|+++|++.+ -.|++++
T Consensus 126 ~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~ 196 (198)
T TIGR01189 126 A-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEAREL 196 (198)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEe
Confidence 5 5999999999999999999999999999999999999999999999875 47899999988742 2457665
Q ss_pred e
Q 044411 181 L 181 (363)
Q Consensus 181 v 181 (363)
.
T Consensus 197 ~ 197 (198)
T TIGR01189 197 R 197 (198)
T ss_pred e
Confidence 4
No 287
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=1e-22 Score=212.90 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=111.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.++.++||+|++.+++ .|++||+.++..- ...+ ++.++++..+ +
T Consensus 529 ~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~----~~~~------------------------~i~~a~~~~~l~~~i~~l 579 (694)
T TIGR01846 529 LRRQMGVVLQENVLFS-RSIRDNIALCNPG----APFE------------------------HVIHAAKLAGAHDFISEL 579 (694)
T ss_pred HHHhCeEEccCCeehh-hhHHHHHhcCCCC----CCHH------------------------HHHHHHHHcChHHHHHhC
Confidence 4678999999988776 6999999874210 0000 1222233332 3
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
+...||.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. .++|+|+++|++. .
T Consensus 580 p~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~ 654 (694)
T TIGR01846 580 PQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--T 654 (694)
T ss_pred cCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--H
Confidence 3446777775 356899999999999999999999999999999999999999999999885 3789999998874 4
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||+|++|++|++++.|+.++
T Consensus 655 ~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 655 VRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHhCCEEEEEeCCEEEEeCCHHH
Confidence 46799999999999999998653
No 288
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.88 E-value=1.6e-22 Score=206.82 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=111.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-------CC
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-------GL 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL 92 (363)
.++.++|++|++.+|+. |++||+.++..-. ..+ ++.+.++.. .+
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~----~~~------------------------~~~~~~~~~~l~~~i~~l 437 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGRPDA----TQQ------------------------EIEHVARLASVHDDILRL 437 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCCCCC----CHH------------------------HHHHHHHHcCCHHHHHhC
Confidence 35679999999988874 9999998752100 000 122223332 33
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..+|.+|+ ....||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+++|++. .
T Consensus 438 p~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~ 512 (569)
T PRK10789 438 PQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--A 512 (569)
T ss_pred cCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--H
Confidence 4556777775 356799999999999999999999999999999999999999999999875 3789999998874 4
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||++++|++|+++..|+.++
T Consensus 513 ~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 513 LTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHcCCEEEEEeCCEEEEecCHHH
Confidence 56799999999999999998653
No 289
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.88 E-value=1.3e-22 Score=212.20 Aligned_cols=140 Identities=23% Similarity=0.271 Sum_probs=108.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.++.++||+|++.+|+ .|++|||.++..-. .. +++.++++..++
T Consensus 553 lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~~----~~------------------------e~i~~al~~a~l~~~i~~l 603 (711)
T TIGR00958 553 LHRQVALVGQEPVLFS-GSVRENIAYGLTDT----PD------------------------EEIMAAAKAANAHDFIMEF 603 (711)
T ss_pred HHhhceEEecCccccc-cCHHHHHhcCCCCC----CH------------------------HHHHHHHHHcCCHHHHHhC
Confidence 3568999999988776 69999998753110 00 013333444443
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...+.+ .. . ..++|+|+++|++. .
T Consensus 604 p~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~--~ 676 (711)
T TIGR00958 604 PNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLS--T 676 (711)
T ss_pred CCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHH--H
Confidence 3446777875 356799999999999999999999999999999999999999988 22 2 24789999998873 5
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
.+.||+|++|++|+++..|+.++
T Consensus 677 i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 677 VERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHhCCEEEEEECCEEEEeeCHHH
Confidence 67899999999999999998653
No 290
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=1.5e-22 Score=224.08 Aligned_cols=145 Identities=23% Similarity=0.323 Sum_probs=114.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-------CC
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-------GL 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL 92 (363)
.|+.+|||+|++.+| ..|++|||.|+..- .. .. .++++++.. .|
T Consensus 1294 lR~~i~~V~Qep~LF-~gTIreNI~~g~~~----at--------~e----------------eI~~A~k~A~l~~fI~~L 1344 (1466)
T PTZ00265 1294 LRNLFSIVSQEPMLF-NMSIYENIKFGKED----AT--------RE----------------DVKRACKFAAIDEFIESL 1344 (1466)
T ss_pred HHhhccEeCCCCccc-cccHHHHHhcCCCC----CC--------HH----------------HHHHHHHHcCCHHHHHhC
Confidence 578899999999888 48999999986310 00 00 122223322 45
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||||+.+|+|||||||||+||+.+...|.+.|.++....++|+|+++|++ ..
T Consensus 1345 P~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--st 1421 (1466)
T PTZ00265 1345 PNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--AS 1421 (1466)
T ss_pred ccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HH
Confidence 6678999995 55679999999999999999999999999999999999999999999988532478999999887 45
Q ss_pred HhhhcceeeecC----CeEE-EecCCCCC
Q 044411 173 FDLFDDIILMAE----GKIL-YHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~----G~iv-~~G~~~~~ 196 (363)
.+.||+|++|++ |+++ +.|+.++.
T Consensus 1422 i~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1422 IKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 678999999999 8955 78886543
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.7e-22 Score=176.35 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=92.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+|++||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~------------------------------------------------------- 99 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIAL------------------------------------------------------- 99 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheee-------------------------------------------------------
Confidence 4679999999888888999888632
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|+++|++ .++..+||+++
T Consensus 100 ------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 172 (178)
T cd03229 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVV 172 (178)
T ss_pred ------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEE
Confidence 07999999999999999999999999999999999999999999999875478999988765 47778999999
Q ss_pred eecCCe
Q 044411 181 LMAEGK 186 (363)
Q Consensus 181 vL~~G~ 186 (363)
+|++|+
T Consensus 173 ~l~~g~ 178 (178)
T cd03229 173 VLRDGK 178 (178)
T ss_pred EEeCCC
Confidence 999885
No 292
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.3e-22 Score=213.20 Aligned_cols=150 Identities=24% Similarity=0.300 Sum_probs=117.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.+|.|.|+|.||. -|++||+.|+.. . .. .. +.....+.++ +.+. ..+|++..||.
T Consensus 1062 LR~~i~lVsQEP~LF~-~TIrENI~YG~~-~-vs--~~---eIi~Aak~AN------------aH~F--I~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGSE-E-VS--EE---EIIEAAKLAN------------AHNF--ISSLPQGYDTR 1119 (1228)
T ss_pred HHHhcceeccCchhhc-ccHHHHHhccCC-C-CC--HH---HHHHHHHHhh------------hHHH--HhcCcCcccCc
Confidence 4789999999999886 699999999721 1 00 00 0000001000 1111 24789999999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+ ...+||||||||++||||++.+|+||||||.||+||+++.+.+-+.|.+.. .|+|.|++.|..+ ..+-||.|
T Consensus 1120 vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I 1194 (1228)
T KOG0055|consen 1120 VGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVI 1194 (1228)
T ss_pred cCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEE
Confidence 996 556799999999999999999999999999999999999999999999975 3778777788764 56789999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
+|+++|++++.|+.++.
T Consensus 1195 ~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1195 AVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred EEEECCEEEecccHHHH
Confidence 99999999999987643
No 293
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=7.7e-23 Score=174.40 Aligned_cols=160 Identities=22% Similarity=0.250 Sum_probs=130.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
+..||.-+|.+..|+.+||+|||.++.+.... .+..+..+. ..++..+++++|...||.+.++...
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~-----v~a~L~~r~---------~~~e~~ride~La~igL~~~~~~~A 145 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKS-----VFASLFARL---------RAEERRRIDELLATIGLGDERDRLA 145 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcc-----hHHHhhhhc---------ChhHHHHHHHHHHHcccchhhhhhh
Confidence 56789999999999999999999998654321 111111110 1112236999999999999999888
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+. ||.||||++.|++.++++|++|+||||++|+--....+..++|+.++. +.+|+++ .|++..+.+++++|.
T Consensus 146 ~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVV-EHDM~Fvr~~A~~VT 217 (249)
T COG4674 146 AL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVV-EHDMGFVREIADKVT 217 (249)
T ss_pred hh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEE-eccHHHHHHhhheeE
Confidence 75 999999999999999999999999999999999999999999999974 4567665 578889999999999
Q ss_pred eecCCeEEEecCCCCCCCCCCh
Q 044411 181 LMAEGKILYHGPRKVCPDRKAV 202 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~~~~~~~ 202 (363)
+|++|.+.+.|+.++...+..+
T Consensus 218 Vlh~G~VL~EGsld~v~~dp~V 239 (249)
T COG4674 218 VLHEGSVLAEGSLDEVQNDPKV 239 (249)
T ss_pred EEeccceeecccHHHhhcCcce
Confidence 9999999999998866554443
No 294
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=3.3e-22 Score=178.74 Aligned_cols=130 Identities=21% Similarity=0.248 Sum_probs=105.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++|++|++.+++.+||.||+.+....... . ..++.++++.+||.+..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~-------------~-------------~~~~~~~l~~~~l~~~~~~~ 124 (207)
T PRK13539 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFLGG-------------E-------------ELDIAAALEAVGLAPLAHLP 124 (207)
T ss_pred hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC-------------c-------------HHHHHHHHHHcCCHHHHcCC
Confidence 355789999998888999999999775322110 0 01367789999998766666
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||+++|+.. ++.. |++
T Consensus 125 ~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~ 195 (207)
T PRK13539 125 FG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARE 195 (207)
T ss_pred hh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcE
Confidence 54 5999999999999999999999999999999999999999999999876 4889999988764 5554 888
Q ss_pred eeecC
Q 044411 180 ILMAE 184 (363)
Q Consensus 180 ~vL~~ 184 (363)
+.+..
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 77744
No 295
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.8e-22 Score=194.91 Aligned_cols=148 Identities=22% Similarity=0.288 Sum_probs=122.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
...|+.|+|+..+.|+|||.||+.++........ +.+ ... ...++.++|+.+|+....++++
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g----~id--~~~------------m~~~A~~~l~~lg~~~~~~~~v 143 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFG----LID--RKA------------MRRRARELLARLGLDIDPDTLV 143 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCC----ccC--HHH------------HHHHHHHHHHHcCCCCChhhhh
Confidence 3569999999999999999999988754332100 000 000 1124788899999965578888
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
++ ||+||||.|+|||||..+++|++||||||.|+......+.++++++++ .|.+||+++| ..++++++||||.
T Consensus 144 ~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISH-rl~Ei~~i~Drit 216 (500)
T COG1129 144 GD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISH-RLDEVFEIADRIT 216 (500)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcC-cHHHHHHhcCEEE
Confidence 75 999999999999999999999999999999999999999999999986 5999999886 5579999999999
Q ss_pred eecCCeEEEecCC
Q 044411 181 LMAEGKILYHGPR 193 (363)
Q Consensus 181 vL~~G~iv~~G~~ 193 (363)
||.+|+.+..++.
T Consensus 217 VlRDG~~v~~~~~ 229 (500)
T COG1129 217 VLRDGRVVGTRPT 229 (500)
T ss_pred EEeCCEEeeeccc
Confidence 9999999988873
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.88 E-value=3.7e-22 Score=204.57 Aligned_cols=149 Identities=20% Similarity=0.269 Sum_probs=108.8
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|++.+++ .|++||+.++.... . .+...+ ..+.. .+.+.+. .+.+..++.
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~---~-~~~~~~---a~~~~------------~~~~~i~--~l~~g~~t~ 464 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGREGA---T-DEEVYE---AAKAA------------AAHDFIL--KRSNGYDTL 464 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCCCCC---C-HHHHHH---HHHHh------------CcHHHHH--hccccccch
Confidence 4568999999988776 69999998753110 0 000000 00000 0111121 223334566
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+|+ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. .++|+|+++|++. . ...||+|
T Consensus 465 ~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~-~-~~~~d~i 539 (585)
T TIGR01192 465 VGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLS-T-VRNADLV 539 (585)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH-H-HHcCCEE
Confidence 654 356799999999999999999999999999999999999999999999874 3789999998874 4 4679999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+++..|+.++
T Consensus 540 ~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 540 LFLDQGRLIEKGSFQE 555 (585)
T ss_pred EEEECCEEEEECCHHH
Confidence 9999999999888653
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.5e-22 Score=200.14 Aligned_cols=151 Identities=20% Similarity=0.281 Sum_probs=113.3
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 96 (363)
++.++|++|+. .+++.+|+.+|..+......... .... .... ...++.++++.+++. +..
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~------------~~~~~~~~l~~~~l~~~~~ 385 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNK-VGLL---DNSR------------MKSDTQWVIDSMRVKTPGH 385 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccc-cccc---CcHH------------HHHHHHHHHHhcCccCCCc
Confidence 34589999984 47888998887433210000000 0000 0000 011367789999995 455
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||++++.+|+||||||||+|||+.++..+++.|+++++ .|.|||+++|+. +++..+|
T Consensus 386 ~~~~~-----~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~ 458 (491)
T PRK10982 386 RTQIG-----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGIT 458 (491)
T ss_pred ccccc-----cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhC
Confidence 66655 5999999999999999999999999999999999999999999999976 488999988765 5888999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|+++..++++
T Consensus 459 d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 459 DRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999877653
No 298
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=2.7e-22 Score=185.21 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=105.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++|++|++.+++ .|++||+...... .. ... ..... ...+.+.++.+ |++...+.
T Consensus 94 ~~~i~~v~q~~~l~~-~tv~~nl~~~~~~----~~-~~~------~~~l~---------~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 94 RSRLSIILQDPILFS-GSIRFNLDPECKC----TD-DRL------WEALE---------IAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred hhhEEEECCCCcccc-cHHHHhcCcCCCC----CH-HHH------HHHHH---------HhCcHHHHhhcccccCcEecc
Confidence 567999999988776 5999998542110 00 000 00000 00133444444 45443332
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
..+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++. .+.|||+++|++. .+. .||+
T Consensus 153 -----~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~-~~~-~~dr 223 (257)
T cd03288 153 -----GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVS-TIL-DADL 223 (257)
T ss_pred -----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChH-HHH-hCCE
Confidence 345799999999999999999999999999999999999999999999874 3789999988775 555 4999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|+++..|+++
T Consensus 224 i~~l~~G~i~~~g~~~ 239 (257)
T cd03288 224 VLVLSRGILVECDTPE 239 (257)
T ss_pred EEEEECCEEEEeCCHH
Confidence 9999999999888754
No 299
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=5.3e-22 Score=174.98 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=95.9
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.++|++|++. .+...||+||+.+.....+.. ..+. .++++++++.+||.+..++.
T Consensus 67 ~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~ 124 (190)
T TIGR01166 67 RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLS----------EAEV------------ERRVREALTAVGASGLRERP 124 (190)
T ss_pred HhhEEEEecChhhccccccHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCchhhhhCC
Confidence 457999999873 333579999998864321100 0000 11377889999998877776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
++ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++.
T Consensus 125 ~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 125 TH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 54 5999999999999999999999999999999999999999999999976 4889999988763
No 300
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.87 E-value=5e-22 Score=176.59 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh-hhcceeeecCC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD-LFDDIILMAEG 185 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~-~~D~v~vL~~G 185 (363)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|+++|++. .+.. +||++++|++|
T Consensus 104 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G 181 (200)
T cd03217 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDG 181 (200)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECC
Confidence 4999999999999999999999999999999999999999999999875 4789999988764 6666 79999999999
Q ss_pred eEEEecCCC
Q 044411 186 KILYHGPRK 194 (363)
Q Consensus 186 ~iv~~G~~~ 194 (363)
++++.|+.+
T Consensus 182 ~i~~~~~~~ 190 (200)
T cd03217 182 RIVKSGDKE 190 (200)
T ss_pred EEEEEccHH
Confidence 999887543
No 301
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.87 E-value=3.1e-22 Score=205.18 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=110.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.++.++|+||++.+|+ .|++||+.++..-. .. +++.++++..|+
T Consensus 412 ~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~----~~------------------------~~~~~~l~~~~l~~~i~~l 462 (576)
T TIGR02204 412 LRARMALVPQDPVLFA-ASVMENIRYGRPDA----TD------------------------EEVEAAARAAHAHEFISAL 462 (576)
T ss_pred HHHhceEEccCCcccc-ccHHHHHhcCCCCC----CH------------------------HHHHHHHHHcCcHHHHHhC
Confidence 3567999999888765 69999998742100 00 013333444433
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..++.+|+ ....||||||||++||||++.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|++ +.
T Consensus 463 ~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~--~~ 537 (576)
T TIGR02204 463 PEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRL--AT 537 (576)
T ss_pred CCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecch--HH
Confidence 2335666665 3567999999999999999999999999999999999999999999998853 68999999887 45
Q ss_pred HhhhcceeeecCCeEEEecCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
...||+|++|++|+++..|+.+
T Consensus 538 ~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 538 VLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHhCCEEEEEECCEEEeeecHH
Confidence 6789999999999999988854
No 302
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.87 E-value=3.3e-22 Score=173.66 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCeE
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKI 187 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~i 187 (363)
||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|.|+|+++|+.. .+ ..||++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 699999999999999999999999999999999999999999999975 4889999988764 55 68999999999974
No 303
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=8.5e-22 Score=180.91 Aligned_cols=134 Identities=21% Similarity=0.253 Sum_probs=109.1
Q ss_pred EEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cccccccC
Q 044411 24 SAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADTLVGD 102 (363)
Q Consensus 24 ~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~ 102 (363)
+.|..++...+..+||.|++.|...... . .++.++++.+||.. ..+..+
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~~-------------~---------------~~~~~~L~~vgL~~l~l~~~~-- 167 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIPK-------------I---------------ARKLQTLCDVGLGYIKLGQPA-- 167 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhhh-------------H---------------HHHHHHHHHcCCchhhhcCcc--
Confidence 5566676677788999999988643210 0 13566799999976 355544
Q ss_pred CcCCCCChHHHHHHHHHHHHhCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 103 AIRRGISGGQKRRLTTGEMLVGP---IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 103 ~~~~~LSGGqrqRv~ia~aL~~~---P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
..|||||+||+.||++|+.+ |++++|||||+|||+.....+.+.|+++++ .|.|+|+++|++. .+ ..||++
T Consensus 168 ---~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~-~i-~~aD~i 241 (261)
T cd03271 168 ---TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLD-VI-KCADWI 241 (261)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEE
Confidence 46999999999999999996 799999999999999999999999999976 4889999988763 44 579999
Q ss_pred eee------cCCeEEEecCC
Q 044411 180 ILM------AEGKILYHGPR 193 (363)
Q Consensus 180 ~vL------~~G~iv~~G~~ 193 (363)
+.| ++|++++.|++
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEecCCcCCCCCEEEEeCCC
Confidence 999 89999999874
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.87 E-value=8.2e-22 Score=198.22 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=109.7
Q ss_pred ceeEEEEccccccCC--CCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-ccc
Q 044411 21 QKLSAYVSQYDLHIP--EMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~--~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 97 (363)
++.++|++|++.+++ ..|+.+++.++.... ... ........ ..+++++++.+||.+ ..+
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~-------------~~~~~~~l~~~~l~~~~~~ 396 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS-IGI----YQAVSDRQ-------------QKLAQQWLDILGIDKRTAD 396 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccc-ccc----ccCCCHHH-------------HHHHHHHHHHcCCchhhcc
Confidence 457999999876544 357777665432100 000 00000000 114788899999987 777
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh-hh
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD-LF 176 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~-~~ 176 (363)
+.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++++.|||+++|+. +++.+ +|
T Consensus 397 ~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~ 470 (490)
T PRK10938 397 APFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACIT 470 (490)
T ss_pred Cchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhh
Confidence 7665 59999999999999999999999999999999999999999999999875445688888765 46766 59
Q ss_pred cceeeecCCeEEEec
Q 044411 177 DDIILMAEGKILYHG 191 (363)
Q Consensus 177 D~v~vL~~G~iv~~G 191 (363)
|++++|++|++++.-
T Consensus 471 d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 471 HRLEFVPDGDIYRYV 485 (490)
T ss_pred eeEEEecCCceEEee
Confidence 999999999987653
No 305
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.1e-22 Score=167.85 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=114.8
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc-cc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC-AD 97 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 97 (363)
..|..++||.|.+.+|+. ||++|+.|....+.... + ......+|+++++.+. .+
T Consensus 74 a~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~-------------------d-----r~aa~~llar~~l~~~~L~ 128 (223)
T COG4619 74 AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP-------------------D-----RAAALDLLARFALPDSILT 128 (223)
T ss_pred HHHHHHHHHHcCcccccc-chhhccccchHHhccCC-------------------C-----hHHHHHHHHHcCCchhhhc
Confidence 357789999999999984 99999999876653110 0 0135677889998764 34
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.+ ..||||||||++|+|.|..-|+|||||||||+||+.+++.|-++|.++.++...+++.+||++ ++..+.+|
T Consensus 129 k~i-----t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~ 202 (223)
T COG4619 129 KNI-----TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHAD 202 (223)
T ss_pred chh-----hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhh
Confidence 433 469999999999999999999999999999999999999999999998877788999988776 48889999
Q ss_pred ceeeecCCeE
Q 044411 178 DIILMAEGKI 187 (363)
Q Consensus 178 ~v~vL~~G~i 187 (363)
+++-+..|++
T Consensus 203 k~itl~~G~~ 212 (223)
T COG4619 203 KVITLQPGHA 212 (223)
T ss_pred eEEEeccCcc
Confidence 9999999875
No 306
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.87 E-value=1.1e-21 Score=171.28 Aligned_cols=81 Identities=26% Similarity=0.455 Sum_probs=73.2
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
.||||||||++|||+++.+|++|+|||||+|||+.++..+++.|++++ + +.|||+++|++. ++ ..||++++|++|+
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~~~~l~~g~ 173 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLT-GI-EHMDKILFLENGK 173 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHH-HH-HhCCEEEEEECCE
Confidence 399999999999999999999999999999999999999999999985 3 789999888764 55 4799999999999
Q ss_pred EEEec
Q 044411 187 ILYHG 191 (363)
Q Consensus 187 iv~~G 191 (363)
+++.|
T Consensus 174 i~~~~ 178 (178)
T cd03247 174 IIMQG 178 (178)
T ss_pred EEecC
Confidence 98754
No 307
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=1e-21 Score=175.15 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=94.9
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccccc
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v 100 (363)
.++|++|++.++ ..|++||+.+..... .+... ...+.. .+.+.++.+ |++...+.
T Consensus 67 ~i~~~~q~~~l~-~~t~~enl~~~~~~~-----~~~~~---~~~~~~------------~l~~~~~~~~~~~~~~~~~-- 123 (204)
T cd03250 67 SIAYVSQEPWIQ-NGTIRENILFGKPFD-----EERYE---KVIKAC------------ALEPDLEILPDGDLTEIGE-- 123 (204)
T ss_pred EEEEEecCchhc-cCcHHHHhccCCCcC-----HHHHH---HHHHHc------------CcHHHHHhccCcccceecC--
Confidence 589999998887 569999998753211 00000 000000 011112222 22222222
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
....||||||||++|||+|+.+|++++|||||+|||+.++..+.+ +++++++ .|.|||+++|++. .+.. ||++
T Consensus 124 ---~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i 197 (204)
T cd03250 124 ---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQI 197 (204)
T ss_pred ---CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEE
Confidence 346799999999999999999999999999999999999999998 5666655 3789999998864 5555 9999
Q ss_pred eeecCCe
Q 044411 180 ILMAEGK 186 (363)
Q Consensus 180 ~vL~~G~ 186 (363)
++|++|+
T Consensus 198 ~~l~~G~ 204 (204)
T cd03250 198 VVLDNGR 204 (204)
T ss_pred EEEeCCC
Confidence 9999985
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=1.2e-21 Score=199.76 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=114.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhh-ccC-----------CCchhhhh----hhcHHHHhhhcCCCCCcchhhhHH
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYC-QGV-----------GSRADILL----ELSGREEEARIIPDPDIDTYMKTD 84 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~ 84 (363)
...+|||+|++.+++.+||.||+.++... ... ........ ............ ...+...+++
T Consensus 69 ~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (556)
T PRK11819 69 GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAA--DAWDLDSQLE 146 (556)
T ss_pred CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhc--CccchHHHHH
Confidence 35699999999999999999999875321 000 00000000 000000000000 0001123578
Q ss_pred HHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEE
Q 044411 85 YNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 164 (363)
Q Consensus 85 ~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~ 164 (363)
++++.+|+.. .++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++
T Consensus 147 ~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tviii 216 (556)
T PRK11819 147 IAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVVAV 216 (556)
T ss_pred HHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEEEE
Confidence 8899999964 565554 599999999999999999999999999999999999999999998762 488888
Q ss_pred ecCCChHHHhhhcceeeecCCeEE-EecCCC
Q 044411 165 LLQPSPETFDLFDDIILMAEGKIL-YHGPRK 194 (363)
Q Consensus 165 ~h~~~~~~~~~~D~v~vL~~G~iv-~~G~~~ 194 (363)
+|+. +.+..+||+|++|++|+++ +.|+.+
T Consensus 217 sHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 246 (556)
T PRK11819 217 THDR-YFLDNVAGWILELDRGRGIPWEGNYS 246 (556)
T ss_pred eCCH-HHHHhhcCeEEEEeCCEEEEecCCHH
Confidence 8765 5888999999999999986 677654
No 309
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.3e-21 Score=174.03 Aligned_cols=125 Identities=20% Similarity=0.194 Sum_probs=101.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+||.||+.+...... .+ .++.++++.+++.+..++.+
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~-------------~~--------------~~~~~~l~~~~l~~~~~~~~ 125 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSP-------------GA--------------VGITELCRLFSLEHLIDYPC 125 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCc-------------ch--------------HHHHHHHHHcCCchhhhCCh
Confidence 4679999999888899999999987532100 00 13677889999987666665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++. ..+.+|...
T Consensus 126 ~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 126 G-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCch--hccccchhh
Confidence 4 5999999999999999999999999999999999999999999999865 4889999988753 445577544
No 310
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=1.8e-21 Score=175.38 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=96.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccc----
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICA---- 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---- 96 (363)
++.++|++|++.++ ..|++||+.+..... . . +..++++.+++.+..
T Consensus 78 ~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~----~----------~---------------~~~~~~~~~~l~~~~~~~~ 127 (218)
T cd03290 78 RYSVAYAAQKPWLL-NATVEENITFGSPFN----K----------Q---------------RYKAVTDACSLQPDIDLLP 127 (218)
T ss_pred cceEEEEcCCCccc-cccHHHHHhhcCcCC----H----------H---------------HHHHHHHHhCcHHHHHhCc
Confidence 35799999998877 579999997743110 0 0 012223333433221
Q ss_pred ---cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH--HHHHHhhcCCCEEEEEecCCChH
Q 044411 97 ---DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT--CLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 97 ---~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~--~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
++..+ ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+++ +++.+.+ .|.|+|+++|++. .
T Consensus 128 ~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~-~ 204 (218)
T cd03290 128 FGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQ-Y 204 (218)
T ss_pred CccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChH-H
Confidence 11111 2346799999999999999999999999999999999999999998 6666654 5789999988774 5
Q ss_pred HHhhhcceeeecCCe
Q 044411 172 TFDLFDDIILMAEGK 186 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~ 186 (363)
+ ..||++++|++|.
T Consensus 205 ~-~~~d~i~~l~~G~ 218 (218)
T cd03290 205 L-PHADWIIAMKDGS 218 (218)
T ss_pred H-hhCCEEEEecCCC
Confidence 5 5799999999884
No 311
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.86 E-value=1e-21 Score=171.69 Aligned_cols=101 Identities=27% Similarity=0.439 Sum_probs=88.5
Q ss_pred HHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEE
Q 044411 85 YNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 164 (363)
Q Consensus 85 ~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~ 164 (363)
.+++.+|+.+..++.+ +.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.+.|+|++
T Consensus 80 q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 80 QALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154 (180)
T ss_pred HHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3688899987766554 46999999999999999999999999999999999999999999999876447899998
Q ss_pred ecCCChHHHhhhcceeeecCCeEEEec
Q 044411 165 LLQPSPETFDLFDDIILMAEGKILYHG 191 (363)
Q Consensus 165 ~h~~~~~~~~~~D~v~vL~~G~iv~~G 191 (363)
+|++ +++.++||++++|++|++++.|
T Consensus 155 sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 155 LHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 8766 4778899999999999988653
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=1.9e-21 Score=174.51 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=104.6
Q ss_pred EccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccCCcCC
Q 044411 27 VSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGDAIRR 106 (363)
Q Consensus 27 v~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 106 (363)
+.+...+++.+|+.||+.+....++.. ..+ ..+.+.+.++|+...++.++
T Consensus 54 ~~~~~~l~~~ltv~enl~~~~~~~~~~----------~~~---------------~~~~~~~~~~l~~~~~~~~~----- 103 (213)
T PRK15177 54 LGANSFILPGLTGEENARMMASLYGLD----------GDE---------------FSHFCYQLTQLEQCYTDRVS----- 103 (213)
T ss_pred cccccccCCcCcHHHHHHHHHHHcCCC----------HHH---------------HHHHHHHHhChhHHhhchHh-----
Confidence 445567889999999998865433210 000 01223455677777776665
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
.||||||||++||++|+.+|+++||||||+++|+.++..+.+.+.+..+ +.++|+++|++ ..+..+||++++|++|+
T Consensus 104 ~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~ 180 (213)
T PRK15177 104 EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGK 180 (213)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCe
Confidence 5999999999999999999999999999999999999999998865443 35678777665 57888999999999999
Q ss_pred EEEecCCCC
Q 044411 187 ILYHGPRKV 195 (363)
Q Consensus 187 iv~~G~~~~ 195 (363)
+++.|+.+.
T Consensus 181 i~~~~~~~~ 189 (213)
T PRK15177 181 ITMCEDLAQ 189 (213)
T ss_pred EEEeCCHHH
Confidence 999877653
No 313
>PLN03232 ABC transporter C family member; Provisional
Probab=99.86 E-value=1e-21 Score=218.95 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=112.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.|+.++||||++.+|+. |++|||.+.... . . +++.++++..++
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~----s---------d----------------eei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFSEH----N---------D----------------ADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCCCC----C---------H----------------HHHHHHHHHcCCHHHHHhC
Confidence 57889999999999875 999999753210 0 0 013333333333
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|... .
T Consensus 1358 p~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~--t 1432 (1495)
T PLN03232 1358 PFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLN--T 1432 (1495)
T ss_pred cCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH--H
Confidence 3456777775 445799999999999999999999999999999999999999999999874 3789999988774 4
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
...||+|++|++|++++.|++++.
T Consensus 1433 i~~~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1433 IIDCDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred HHhCCEEEEEECCEEEEECCHHHH
Confidence 456999999999999999987754
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=198.15 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=109.0
Q ss_pred ceeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-cccc
Q 044411 21 QKLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICAD 97 (363)
Q Consensus 21 ~~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 97 (363)
++.+||++|+.. +++.+||.|++.+... .. . ...+++++++.+|+. +..+
T Consensus 381 ~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~~-----------~-------------~~~~~~~~l~~~~l~~~~~~ 433 (530)
T PRK15064 381 NANIGYYAQDHAYDFENDLTLFDWMSQWRQ---EG-----------D-------------DEQAVRGTLGRLLFSQDDIK 433 (530)
T ss_pred ceEEEEEcccccccCCCCCcHHHHHHHhcc---CC-----------c-------------cHHHHHHHHHHcCCChhHhc
Confidence 457999999864 5567999999864210 00 0 001367789999994 5667
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 98 TLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 98 ~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
+.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|+. +.+..+||
T Consensus 434 ~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d 503 (530)
T PRK15064 434 KSVK-----VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLAT 503 (530)
T ss_pred Cccc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCC
Confidence 6665 59999999999999999999999999999999999999999999876 24888888765 58889999
Q ss_pred ceeeecCCeEE-EecCC
Q 044411 178 DIILMAEGKIL-YHGPR 193 (363)
Q Consensus 178 ~v~vL~~G~iv-~~G~~ 193 (363)
++++|++|+++ +.|++
T Consensus 504 ~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 504 RIIEITPDGVVDFSGTY 520 (530)
T ss_pred EEEEEECCeEEEcCCCH
Confidence 99999999987 66654
No 315
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=1.6e-21 Score=217.88 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=113.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.|+.++||||++.+|+. |++|||.++... .. + .+.++++..+ +
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~~~----td-e------------------------ei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFNEH----ND-A------------------------DLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCCCC----CH-H------------------------HHHHHHHHcCcHHHHHhC
Confidence 57889999999999875 999999764210 00 0 1223333332 3
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
....||.+|+ ....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++.. .++|+|+++|... .
T Consensus 1361 p~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~--t 1435 (1622)
T PLN03130 1361 SLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLN--T 1435 (1622)
T ss_pred ccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChH--H
Confidence 4456788875 445799999999999999999999999999999999999999999999875 3789999988764 3
Q ss_pred HhhhcceeeecCCeEEEecCCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~~ 197 (363)
...||+|++|++|++++.|++++..
T Consensus 1436 I~~~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1436 IIDCDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4569999999999999999987553
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=3.4e-21 Score=179.71 Aligned_cols=147 Identities=17% Similarity=0.239 Sum_probs=102.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
..++|++|++.+++. ||+||+.+..... . . ......... .+...++.+.. ..++.++
T Consensus 98 g~i~yv~q~~~l~~~-tv~enl~~~~~~~---~-~----~~~~~l~~~------------~l~~~l~~~~~--~~~~~~~ 154 (282)
T cd03291 98 GRISFSSQFSWIMPG-TIKENIIFGVSYD---E-Y----RYKSVVKAC------------QLEEDITKFPE--KDNTVLG 154 (282)
T ss_pred CEEEEEeCccccccc-CHHHHhhcccccC---H-H----HHHHHHHHh------------CCHHHHHhccc--cccceec
Confidence 359999999887774 9999998743210 0 0 000000000 01222222211 1122222
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHH-HHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCL-QHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l-~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.....||||||||++||++|+.+|++|||||||+|||+.++..+.+.+ +.++ .+.|||+++|++. .+ ..||+++
T Consensus 155 -~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~ 229 (282)
T cd03291 155 -EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKIL 229 (282)
T ss_pred -CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEE
Confidence 134579999999999999999999999999999999999999999854 5554 3689999888764 44 5899999
Q ss_pred eecCCeEEEecCCCCC
Q 044411 181 LMAEGKILYHGPRKVC 196 (363)
Q Consensus 181 vL~~G~iv~~G~~~~~ 196 (363)
+|++|++++.|+++..
T Consensus 230 ~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 230 ILHEGSSYFYGTFSEL 245 (282)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999886543
No 317
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=168.88 Aligned_cols=160 Identities=26% Similarity=0.321 Sum_probs=121.0
Q ss_pred CccccCccccce--eEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHH
Q 044411 11 GLSVTGEFVPQK--LSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYN 86 (363)
Q Consensus 11 ~~~~~~~~~~~~--~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 86 (363)
|.+++..+.++| .++-|+|++. ..|.||+.||+.++.. ++.............++ -..+.
T Consensus 67 g~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~---------------~f~~~ 130 (263)
T COG1101 67 GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAES-RGKKRGLSSALNERRRS---------------SFRER 130 (263)
T ss_pred ceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh-cCcccccchhhhHHHHH---------------HHHHH
Confidence 456666555544 4788999964 6899999999998753 22111000000000000 02223
Q ss_pred HHH--cCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEE
Q 044411 87 LKI--LGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 164 (363)
Q Consensus 87 l~~--lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~ 164 (363)
++. +||++..++.+|- |||||||-+++++|-+++|+||||||-|++|||.++..+++.-.++.++.+.|.+++
T Consensus 131 l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMV 205 (263)
T COG1101 131 LARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205 (263)
T ss_pred HhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEE
Confidence 444 4678888888875 999999999999999999999999999999999999999999999888888999998
Q ss_pred ecCCChHHHhhhcceeeecCCeEEEecC
Q 044411 165 LLQPSPETFDLFDDIILMAEGKILYHGP 192 (363)
Q Consensus 165 ~h~~~~~~~~~~D~v~vL~~G~iv~~G~ 192 (363)
||+ +.++..+.+|+++|++|+|+.+-.
T Consensus 206 THn-m~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 206 THN-MEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred ecc-HHHHHhhCCeEEEEeCCeEEEEcc
Confidence 865 568999999999999999998643
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.6e-21 Score=196.29 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=113.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhh-hcc----------CCC-chhhhhhhcHHH-HhhhcCCCCCcchhhhHHHHHH
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTY-CQG----------VGS-RADILLELSGRE-EEARIIPDPDIDTYMKTDYNLK 88 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~-~~~----------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~ 88 (363)
+.++|++|++.+++.+||.|++.++.. ... ... ............ ....... .+...++.++++
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ 140 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDG---YTAEARAGELLL 140 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCc---hhHHHHHHHHHH
Confidence 468999999989999999999987531 000 000 000000000000 0000000 011125788999
Q ss_pred HcCCcccc-cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 89 ILGLDICA-DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 89 ~lgL~~~~-~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
.+||.+.. +..+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|+
T Consensus 141 ~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd 211 (530)
T PRK15064 141 GVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHD 211 (530)
T ss_pred hCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCC
Confidence 99997643 3344 46999999999999999999999999999999999999999999863 37899998876
Q ss_pred CChHHHhhhcceeeecCCeE-EEecCCC
Q 044411 168 PSPETFDLFDDIILMAEGKI-LYHGPRK 194 (363)
Q Consensus 168 ~~~~~~~~~D~v~vL~~G~i-v~~G~~~ 194 (363)
. ..+.++||++++|++|++ ++.|+++
T Consensus 212 ~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 212 R-HFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred H-HHHHhhcceEEEEeCCEEEEecCCHH
Confidence 5 578899999999999998 4777654
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=2.4e-21 Score=216.36 Aligned_cols=146 Identities=23% Similarity=0.278 Sum_probs=113.9
Q ss_pred CccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-----
Q 044411 16 GEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL----- 90 (363)
Q Consensus 16 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l----- 90 (363)
|....+..++||+|++.+++ .|++|||.|+.... .. +.+++++..
T Consensus 673 G~I~l~~~Iayv~Q~p~Lfn-gTIreNI~fg~~~d--~e---------------------------~y~~vl~a~~L~~d 722 (1622)
T PLN03130 673 ASVVIRGTVAYVPQVSWIFN-ATVRDNILFGSPFD--PE---------------------------RYERAIDVTALQHD 722 (1622)
T ss_pred ceEEEcCeEEEEcCccccCC-CCHHHHHhCCCccc--HH---------------------------HHHHHHHHhCcHHH
Confidence 34445678999999988876 69999999864211 00 122223332
Q ss_pred --CCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecC
Q 044411 91 --GLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQ 167 (363)
Q Consensus 91 --gL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~ 167 (363)
.|++..+|.+|+. ...||||||||++||||+..+|+|+|||||||+||+.+..++.+ .++... .++|+|+++|+
T Consensus 723 i~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~ 799 (1622)
T PLN03130 723 LDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQ 799 (1622)
T ss_pred HHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECC
Confidence 2445568888863 56799999999999999999999999999999999999998875 566553 37899999988
Q ss_pred CChHHHhhhcceeeecCCeEEEecCCCCC
Q 044411 168 PSPETFDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 168 ~~~~~~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
. .....||+|++|++|+++..|+.++.
T Consensus 800 l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL 826 (1622)
T PLN03130 800 L--HFLSQVDRIILVHEGMIKEEGTYEEL 826 (1622)
T ss_pred H--hHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 7 46778999999999999999987644
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=3.3e-21 Score=196.36 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=111.8
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhh-ccC-----------CCchhhhh----hhcHHHHhhhcCCCCCcchhhhHHH
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYC-QGV-----------GSRADILL----ELSGREEEARIIPDPDIDTYMKTDY 85 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (363)
..+|||+|++.+++.+||.||+.++... ++. ........ ............ ...+...++.+
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 145 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAA--DAWDLDRKLEI 145 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhc--CcchhHHHHHH
Confidence 5699999999999999999999875321 000 00000000 000000000000 00001124677
Q ss_pred HHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEe
Q 044411 86 NLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165 (363)
Q Consensus 86 ~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~ 165 (363)
+++.+|+.. .++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++
T Consensus 146 ~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiis 215 (552)
T TIGR03719 146 AMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVT 215 (552)
T ss_pred HHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEe
Confidence 888888854 45554 469999999999999999999999999999999999999999999875 24888887
Q ss_pred cCCChHHHhhhcceeeecCCeEE-EecCCC
Q 044411 166 LQPSPETFDLFDDIILMAEGKIL-YHGPRK 194 (363)
Q Consensus 166 h~~~~~~~~~~D~v~vL~~G~iv-~~G~~~ 194 (363)
|+. ..+..+||++++|++|+++ +.|+.+
T Consensus 216 Hd~-~~~~~~~d~v~~l~~g~i~~~~g~~~ 244 (552)
T TIGR03719 216 HDR-YFLDNVAGWILELDRGRGIPWEGNYS 244 (552)
T ss_pred CCH-HHHHhhcCeEEEEECCEEEEecCCHH
Confidence 655 5888899999999999976 667654
No 321
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.5e-21 Score=187.44 Aligned_cols=150 Identities=23% Similarity=0.380 Sum_probs=116.7
Q ss_pred ceeEEEEccc---cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccc
Q 044411 21 QKLSAYVSQY---DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~---~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 96 (363)
+..++|||.| +.++..++|.+|+.++ .+....... +... ..+ ...++...+.+++. ...
T Consensus 333 ~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~-~l~~~~~~~--~i~~-~~e-------------~~~~~~~~~~l~Ik~~s~ 395 (500)
T COG1129 333 KAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRRG--LIDR-RKE-------------RALAERYIRRLRIKTPSP 395 (500)
T ss_pred HcCCEeCCcccccCcCcCCCcHHHheehH-hhhhhcccc--ccCh-HHH-------------HHHHHHHHHhcCcccCCc
Confidence 4579999976 6789999999999887 222111000 0000 011 11377788888885 334
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+..++ .||||.||||.||++|..+|++|||||||.|+|..++.+|+++|++++++ |++||+++ ...+|+..+|
T Consensus 396 ~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iS-SElpEll~~~ 468 (500)
T COG1129 396 EQPIG-----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMIS-SELPELLGLS 468 (500)
T ss_pred cchhh-----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEe-CChHHHHhhC
Confidence 55554 59999999999999999999999999999999999999999999999985 88988876 4567999999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|||+||++|+++..-+.+
T Consensus 469 DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 469 DRILVMREGRIVGELDRE 486 (500)
T ss_pred CEEEEEECCEEEEEeccc
Confidence 999999999998765443
No 322
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=4.5e-21 Score=184.14 Aligned_cols=146 Identities=20% Similarity=0.225 Sum_probs=122.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
+..||+|.|+..++|++||.||+.++....... . ..... ...+++++.+..||+-..|..|
T Consensus 78 ~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~-~------~~~~~------------~~~~i~~l~~~yGl~vdp~~~V 138 (501)
T COG3845 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG-L------IDRRQ------------ARARIKELSERYGLPVDPDAKV 138 (501)
T ss_pred HcCCcEEeeccccccccchhhhhhhcCcccccc-c------cCHHH------------HHHHHHHHHHHhCCCCCcccee
Confidence 457999999999999999999999875421100 0 00011 1125889999999998888877
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
++ ||-||||||.|-++|..+|++|+|||||+-|-|....++++.++++++ .|+|||++||-. .|+.++|||+.
T Consensus 139 ~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL-~Ev~~iaDrvT 211 (501)
T COG3845 139 AD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKL-KEVMAIADRVT 211 (501)
T ss_pred ec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhhCeeE
Confidence 75 999999999999999999999999999999999999999999999987 599999998765 59999999999
Q ss_pred eecCCeEEEecC
Q 044411 181 LMAEGKILYHGP 192 (363)
Q Consensus 181 vL~~G~iv~~G~ 192 (363)
||.+|+++...+
T Consensus 212 VLR~Gkvvgt~~ 223 (501)
T COG3845 212 VLRRGKVVGTVD 223 (501)
T ss_pred EEeCCeEEeeec
Confidence 999999876554
No 323
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.3e-21 Score=173.23 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=118.3
Q ss_pred cccceeEEEEccc--cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc
Q 044411 18 FVPQKLSAYVSQY--DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC 95 (363)
Q Consensus 18 ~~~~~~~~yv~Q~--~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 95 (363)
+..|+.||||.-. ..+.+..+|+|-+.-+... ..+. +.. .. +.....++..+++.+|+.+.
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~-siG~-y~~--~~-------------~~~~~~~a~~lle~~g~~~l 164 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFA-SIGI-YQE--DL-------------TAEDLAAAQWLLELLGAKHL 164 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccc-cccc-ccc--CC-------------CHHHHHHHHHHHHHcchhhh
Confidence 5568899999743 3455677888876533221 1110 000 00 11122358889999999999
Q ss_pred ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcC-CCEEEEEecCCChHHHh
Q 044411 96 ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHIT-DATILISLLQPSPETFD 174 (363)
Q Consensus 96 ~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~-g~tii~~~h~~~~~~~~ 174 (363)
+|+..+. ||-||||||.|||||+.+|++||||||++|||...+..+.+.|.+++... +.++|+++||. +++..
T Consensus 165 a~r~~~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~ 238 (257)
T COG1119 165 ADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPP 238 (257)
T ss_pred ccCchhh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhccc
Confidence 9988774 99999999999999999999999999999999999999999999988643 56788888877 58999
Q ss_pred hhcceeeecCCeEEEecC
Q 044411 175 LFDDIILMAEGKILYHGP 192 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~ 192 (363)
.+++++++++|++++.|.
T Consensus 239 ~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 239 CFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred ccceEEEeeCCceeeccc
Confidence 999999999999999874
No 324
>PLN03232 ABC transporter C family member; Provisional
Probab=99.85 E-value=4.5e-21 Score=213.81 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=111.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-------CC
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-------GL 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL 92 (363)
.++.++||+|++.+++ -|++|||.|+.... .. +.+++++.. .|
T Consensus 677 ~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~~~--~e---------------------------~~~~vl~~~~L~~di~~L 726 (1495)
T PLN03232 677 IRGSVAYVPQVSWIFN-ATVRENILFGSDFE--SE---------------------------RYWRAIDVTALQHDLDLL 726 (1495)
T ss_pred ecCcEEEEcCcccccc-ccHHHHhhcCCccC--HH---------------------------HHHHHHHHhCCHHHHHhC
Confidence 4668999999988886 59999999874210 00 122222222 34
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
++..+|.+|+. ...||||||||++||||+..+|+|+|||||||+||+.+..++++ +++... .++|+|+++|++.
T Consensus 727 p~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~-- 801 (1495)
T PLN03232 727 PGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH-- 801 (1495)
T ss_pred CCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--
Confidence 55667889864 56799999999999999999999999999999999999999876 455543 4789999998874
Q ss_pred HHhhhcceeeecCCeEEEecCCCCC
Q 044411 172 TFDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
....||+|++|++|+++..|+.++.
T Consensus 802 ~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 802 FLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred hHHhCCEEEEEeCCEEEEecCHHHH
Confidence 5778999999999999999987643
No 325
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.85 E-value=3.6e-21 Score=184.86 Aligned_cols=149 Identities=20% Similarity=0.285 Sum_probs=116.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
-+.|||.||+-.+|+ -||.|||.=. .... ..+...+ ..+.+ .+.+++ +.+.+..||.+
T Consensus 409 G~hiGYLPQdVeLF~-GTIaeNIaRf---~~~~-d~~kIie---AA~lA------------gvHelI--l~lP~GYdT~i 466 (580)
T COG4618 409 GRHIGYLPQDVELFD-GTIAENIARF---GEEA-DPEKVIE---AARLA------------GVHELI--LRLPQGYDTRI 466 (580)
T ss_pred ccccCcCcccceecC-CcHHHHHHhc---cccC-CHHHHHH---HHHHc------------ChHHHH--HhCcCCccCcc
Confidence 478999999888877 5999999421 1000 0001101 00100 144443 56888999999
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
|+ -..+||||||||+++||||..+|.+++||||-|+||..-...+.+.|.++++ .|.|+|+++|.| .+...+|+|+
T Consensus 467 G~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkil 542 (580)
T COG4618 467 GE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKIL 542 (580)
T ss_pred CC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceee
Confidence 96 4567999999999999999999999999999999999999999999999876 578888888877 5888999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++..+|+.++
T Consensus 543 vl~~G~~~~FG~r~e 557 (580)
T COG4618 543 VLQDGRIAAFGPREE 557 (580)
T ss_pred eecCChHHhcCCHHH
Confidence 999999999999763
No 326
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.85 E-value=3.2e-21 Score=215.25 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=112.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.|+.++||||++.+|+. |++|||...... .. +.+.++++..++
T Consensus 1358 LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~----sd-------------------------eei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957 1358 LRFKITIIPQDPVLFSG-SLRMNLDPFSQY----SD-------------------------EEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred HHhcCeEECCCCcccCc-cHHHHcCcccCC----CH-------------------------HHHHHHHHHcCcHHHHhhC
Confidence 57889999999999985 999999632110 00 013333444333
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..||.+|+ ....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++.. .++|+|+++|... .
T Consensus 1408 p~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~--t 1482 (1522)
T TIGR00957 1408 PDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLN--T 1482 (1522)
T ss_pred ccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--H
Confidence 3456777875 445799999999999999999999999999999999999999999999874 3789999988764 4
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
...||+|++|++|++++.|++++.
T Consensus 1483 i~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1483 IMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHhCCEEEEEECCEEEEECCHHHH
Confidence 557999999999999999987644
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.85 E-value=3.1e-21 Score=213.63 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=85.8
Q ss_pred hHHHHHHHcCCc-------ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 044411 82 KTDYNLKILGLD-------ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154 (363)
Q Consensus 82 ~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~ 154 (363)
++.++++.+++. +..||.+|. ....||||||||++|||||+.+|+||||||||++||+.+...|.+.|++++
T Consensus 548 ~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 548 EVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 366677777654 445777775 467799999999999999999999999999999999999999999999987
Q ss_pred hcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 155 HITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 155 ~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
++.|+|+|+++|+.. .+ ..||+|++|++|
T Consensus 627 ~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 627 GNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred hcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 545789999988774 44 789999999987
No 328
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=3.7e-21 Score=214.51 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=113.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.|+.++||||++.+|+. |++|||...... .. +.+.++++..|+
T Consensus 1382 LR~~I~iVpQdp~LF~g-TIreNIdp~~~~-------------sd----------------eeI~~Al~~a~l~~~I~~l 1431 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPFLEA-------------SS----------------AEVWAALELVGLRERVASE 1431 (1560)
T ss_pred HHhcceEECCCCccccc-cHHHHhCcccCC-------------CH----------------HHHHHHHHHCCChHHHhhC
Confidence 57889999999998875 999999542100 00 014444555444
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCC-CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGP-IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~-P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
.+..||.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. .++|+|+++|.. +
T Consensus 1432 p~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl--~ 1506 (1560)
T PTZ00243 1432 SEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRL--H 1506 (1560)
T ss_pred cccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccH--H
Confidence 3446788875 4567999999999999999995 89999999999999999999999999864 368999988876 4
Q ss_pred HHhhhcceeeecCCeEEEecCCCCC
Q 044411 172 TFDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
....||+|++|++|++++.|++++.
T Consensus 1507 ti~~~DrIlVLd~G~VvE~Gt~~eL 1531 (1560)
T PTZ00243 1507 TVAQYDKIIVMDHGAVAEMGSPREL 1531 (1560)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHH
Confidence 5678999999999999999997754
No 329
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=4.3e-21 Score=194.78 Aligned_cols=129 Identities=24% Similarity=0.308 Sum_probs=100.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL------- 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------- 92 (363)
.++.++||+|++.+|+ .|++||+.++.... . . +++.+.++..++
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~--~----------~----------------~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLARPDA--S----------D----------------AEIRRALERAGLDEFVAAL 444 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccCCCC--C----------H----------------HHHHHHHHHcCcHHHHHhC
Confidence 4568999999998886 69999998753110 0 0 013334444443
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||||+.+|++++|||||++||+.+...+.+.++++. .++|+|+++|++ ..
T Consensus 445 p~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~ 519 (529)
T TIGR02857 445 PQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--AL 519 (529)
T ss_pred cccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HH
Confidence 3345777775 456799999999999999999999999999999999999999999999875 378999999886 34
Q ss_pred Hhhhcceeee
Q 044411 173 FDLFDDIILM 182 (363)
Q Consensus 173 ~~~~D~v~vL 182 (363)
.+.||+|++|
T Consensus 520 ~~~~d~i~~l 529 (529)
T TIGR02857 520 AERADRIVVL 529 (529)
T ss_pred HHhCCEEEeC
Confidence 5789999875
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=9e-21 Score=193.28 Aligned_cols=132 Identities=21% Similarity=0.204 Sum_probs=105.2
Q ss_pred eEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cccccc
Q 044411 23 LSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 100 (363)
.+||++|+. .+++.+||.||+.+........ ... ..+..+++.+|+.+ ..++.+
T Consensus 388 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~~ 443 (556)
T PRK11819 388 KLAYVDQSRDALDPNKTVWEEISGGLDIIKVG----------NRE--------------IPSRAYVGRFNFKGGDQQKKV 443 (556)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHhhccccccc----------ccH--------------HHHHHHHHhCCCChhHhcCch
Confidence 589999986 6889999999998764221100 000 02446789999964 456665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. + |||+++|+. ..+..+||+++
T Consensus 444 ~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~ 513 (556)
T PRK11819 444 G-----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHIL 513 (556)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999862 4 788877655 58889999999
Q ss_pred eecC-CeEE
Q 044411 181 LMAE-GKIL 188 (363)
Q Consensus 181 vL~~-G~iv 188 (363)
+|++ |++.
T Consensus 514 ~l~~~g~~~ 522 (556)
T PRK11819 514 AFEGDSQVE 522 (556)
T ss_pred EEECCCeEE
Confidence 9986 7775
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=7.9e-21 Score=174.85 Aligned_cols=134 Identities=22% Similarity=0.185 Sum_probs=107.0
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccC
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGD 102 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 102 (363)
.++|++|...+++ .++.+++.+.... ... ..++.++++.+|+.+..++.++
T Consensus 88 ~i~~~~~~~~~~~-~~~~~~i~~~l~~---------------~~~------------~~~~~~~l~~~gl~~~~~~~~~- 138 (255)
T cd03236 88 KVIVKPQYVDLIP-KAVKGKVGELLKK---------------KDE------------RGKLDELVDQLELRHVLDRNID- 138 (255)
T ss_pred ceeeecchhccCc-hHHHHHHHHHhch---------------hHH------------HHHHHHHHHHcCCchhhcCChh-
Confidence 3789999888777 4888888653210 000 0136788999999877766554
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 103 AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 103 ~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|||+++|+. ..+..+||++++|
T Consensus 139 ----~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l 212 (255)
T cd03236 139 ----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCL 212 (255)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999976 478999988765 5778899999999
Q ss_pred cCCeEEEecC
Q 044411 183 AEGKILYHGP 192 (363)
Q Consensus 183 ~~G~iv~~G~ 192 (363)
+|++.+.|-
T Consensus 213 -~~~~~~~~~ 221 (255)
T cd03236 213 -YGEPGAYGV 221 (255)
T ss_pred -CCCCCccee
Confidence 456665553
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=1e-20 Score=192.83 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=105.4
Q ss_pred eEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cccccc
Q 044411 23 LSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 100 (363)
.+||++|+. .+++.+||.||+.++....+.. ..+ .++.++++.+|+.+ ..++.+
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~~ 441 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDIIQLG----------KRE--------------VPSRAYVGRFNFKGSDQQKKV 441 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhccccccC----------cch--------------HHHHHHHHhCCCChhHhcCch
Confidence 589999986 4788999999998764221100 000 02456789999964 456665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. + |||+++|+. ..+..+||+++
T Consensus 442 ~-----~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~ 511 (552)
T TIGR03719 442 G-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDR-WFLDRIATHIL 511 (552)
T ss_pred h-----hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999872 3 788887665 58888999999
Q ss_pred eecC-CeEEE
Q 044411 181 LMAE-GKILY 189 (363)
Q Consensus 181 vL~~-G~iv~ 189 (363)
+|++ |++..
T Consensus 512 ~l~~~~~~~~ 521 (552)
T TIGR03719 512 AFEGDSHVEW 521 (552)
T ss_pred EEECCCeEEE
Confidence 9986 57663
No 333
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=6.4e-21 Score=212.34 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=114.3
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc------
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD------ 93 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~------ 93 (363)
.|+.++||||++.+|+. |++|||...... . . +++.++++..+|.
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~~~----t---------d----------------eei~~aL~~~~L~~~i~~l 1339 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYEQW----S---------D----------------EEIWKVAEEVGLKSVIEQF 1339 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCcccCC----C---------H----------------HHHHHHHHHCCCHHHHHhC
Confidence 57889999999999985 999999542100 0 0 0244555555543
Q ss_pred -ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 94 -ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 94 -~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
+..|+.+|+ ....||||||||++|||||+.+|+||+|||||++||+.+...|.+.|++.. .++|||+++|.+ ..
T Consensus 1340 p~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl--~t 1414 (1490)
T TIGR01271 1340 PDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRV--EA 1414 (1490)
T ss_pred cccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HH
Confidence 346777775 445799999999999999999999999999999999999999999999874 368999998876 34
Q ss_pred HhhhcceeeecCCeEEEecCCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~~ 197 (363)
...||+|++|++|+++..|++++..
T Consensus 1415 i~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1415 LLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5569999999999999999887543
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=7.7e-21 Score=164.78 Aligned_cols=75 Identities=29% Similarity=0.474 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|+++|++. .+.. ||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 699999999999999999999999999999999999999999999853 689999887764 6665 99999999885
No 335
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4.9e-21 Score=171.25 Aligned_cols=108 Identities=27% Similarity=0.408 Sum_probs=99.0
Q ss_pred hhHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 81 MKTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 81 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
++.+.+.+.++|+...+.++ |.||-|||.|+.||.+|+++|+||||||||-|||..++..|.+.+++...+.+.|
T Consensus 135 ~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aT 209 (325)
T COG4586 135 ERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209 (325)
T ss_pred HHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCce
Confidence 35788899999998777665 5699999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecCCChHHHhhhcceeeecCCeEEEecCCC
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
|+.+|| ....+..+||||++++.|+++|+|+.+
T Consensus 210 VllTTH-~~~di~~lc~rv~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 210 VLLTTH-IFDDIATLCDRVLLIDQGQLVFDGTLA 242 (325)
T ss_pred EEEEec-chhhHHHhhhheEEeeCCcEeecccHH
Confidence 999886 456899999999999999999999865
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=7.2e-21 Score=171.65 Aligned_cols=109 Identities=26% Similarity=0.255 Sum_probs=98.8
Q ss_pred hHHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 82 KTDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 82 ~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
++.++|+.+|+.. ..+ +++++|||||+||+.|||||+.+|+++++|||+|.||...+.+|+++|+++.++.|.|
T Consensus 88 ~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt 162 (268)
T COG4608 88 RVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLT 162 (268)
T ss_pred HHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCe
Confidence 5889999999864 344 4567899999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecCCChHHHhhhcceeeecCCeEEEecCCCCC
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
.++++|+. ..+..+|||+.+|..|+++..|+.++.
T Consensus 163 ~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 163 YLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred EEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHH
Confidence 99988765 588999999999999999999998743
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=1.2e-20 Score=167.01 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=98.4
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|+..+++.+||.||+.+...... . ..++.++++.+++.+..++.++
T Consensus 70 ~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-------------~--------------~~~~~~~l~~~~l~~~~~~~~~ 122 (195)
T PRK13541 70 PYCTYIGHNLGLKLEMTVFENLKFWSEIYN-------------S--------------AETLYAAIHYFKLHDLLDEKCY 122 (195)
T ss_pred hhEEeccCCcCCCccCCHHHHHHHHHHhcc-------------c--------------HHHHHHHHHHcCCHhhhccChh
Confidence 458999999888899999999987532210 0 0136677889999877776554
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++..+ .|.|+|+++|++. .+ ..+|-+
T Consensus 123 -----~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 123 -----SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCcc-cc-chhhee
Confidence 5999999999999999999999999999999999999999999987654 5889999988764 33 335544
No 338
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=8e-21 Score=192.83 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=91.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------Cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------LD 93 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 93 (363)
++.++||+|++.+|+. |++|||.++..-. . . +++.++++..+ |+
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~---~---------~----------------e~i~~al~~a~l~~~i~~lp 457 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGRPDA---T---------D----------------EELWAALERVGLADWLRSLP 457 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccCCCC---C---------H----------------HHHHHHHHHcCCHHHHHhCc
Confidence 5689999999988864 9999998852100 0 0 01334444444 34
Q ss_pred ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 94 ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 94 ~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
+..||.+|+ ....||||||||++|||||+.+|++|+||||||+||+.+...|.+.++++. .++|+|+++|++
T Consensus 458 ~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 458 DGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred ccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 556888886 445699999999999999999999999999999999999999999999874 478999999863
No 339
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.84 E-value=2.3e-20 Score=161.03 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.++++ +.|+|+++|++. ....||++++|++|
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 49999999999999999999999999999999999999999999875 478999998864 45799999999875
No 340
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.1e-20 Score=168.17 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=87.0
Q ss_pred HHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 84 DYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 84 ~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
.+.++.++|.+ ..+..+ ..|||||||||+||++|+.+| +++||||||+|||+.++..+.+.|+++++ .|.|
T Consensus 118 ~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~t 191 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNT 191 (226)
T ss_pred HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 45788999975 355554 469999999999999999998 59999999999999999999999999876 4889
Q ss_pred EEEEecCCChHHHhhhcceeee------cCCeEEEec
Q 044411 161 ILISLLQPSPETFDLFDDIILM------AEGKILYHG 191 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G 191 (363)
+|+++|++. .+ .+||++++| ++|+++++|
T Consensus 192 ii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 192 VLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999998764 44 699999999 999999876
No 341
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=2.1e-20 Score=190.34 Aligned_cols=136 Identities=17% Similarity=0.069 Sum_probs=102.6
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|++.+|+ .|++|| . . . ... +.+++.++.+++....+..
T Consensus 395 ~~~~i~~v~q~~~lf~-~ti~~n---~---~--~-----------~~~-------------~~~~~~~~~~~l~~~~~~~ 441 (547)
T PRK10522 395 YRKLFSAVFTDFHLFD-QLLGPE---G---K--P-----------ANP-------------ALVEKWLERLKMAHKLELE 441 (547)
T ss_pred HhhheEEEecChhHHH-Hhhccc---c---C--c-----------hHH-------------HHHHHHHHHcCCchhhhcc
Confidence 4678999999887765 466665 1 0 0 000 1256667777776543321
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
-|......||||||||++||||++.+|++|+|||||+|||+.+...+.+.+.+..+..++|+|+++|++ +....||++
T Consensus 442 ~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i 519 (547)
T PRK10522 442 DGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRL 519 (547)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEE
Confidence 110013579999999999999999999999999999999999999999988766543478999999886 457789999
Q ss_pred eeecCCeEEEe
Q 044411 180 ILMAEGKILYH 190 (363)
Q Consensus 180 ~vL~~G~iv~~ 190 (363)
++|++|+++..
T Consensus 520 ~~l~~G~i~e~ 530 (547)
T PRK10522 520 LEMRNGQLSEL 530 (547)
T ss_pred EEEECCEEEEe
Confidence 99999999865
No 342
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=1.8e-20 Score=191.03 Aligned_cols=136 Identities=18% Similarity=0.106 Sum_probs=101.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|++.+|+ -|+++|+. . . . . .+++.++++.+++.+..+..
T Consensus 414 ~~~~i~~v~q~~~lf~-~ti~~n~~-----~--~--------~---~-------------~~~~~~~~~~~~l~~~~~~l 461 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD-DLIGPDEG-----E--H--------A---S-------------LDNAQQYLQRLEIADKVKIE 461 (555)
T ss_pred HHhhCcEEccChhhhh-hhhhcccc-----c--c--------h---h-------------HHHHHHHHHHcCCchhhccc
Confidence 3567999999887775 46777731 0 0 0 0 01256677888876654332
Q ss_pred c-cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHH-HHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 100 V-GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQ-HLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 100 v-g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~-~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
. |.+....||||||||++||||++.+|++|+|||||++||+.+...+.+.+. .+.. .++|+|+++|++ +..+.||
T Consensus 462 p~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~--~~~~~~d 538 (555)
T TIGR01194 462 DGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDD--QYFELAD 538 (555)
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccH--HHHHhCC
Confidence 2 212235699999999999999999999999999999999999999988654 4433 478999999876 3567899
Q ss_pred ceeeecCCeEEEe
Q 044411 178 DIILMAEGKILYH 190 (363)
Q Consensus 178 ~v~vL~~G~iv~~ 190 (363)
+|++|++|+++..
T Consensus 539 ~i~~l~~G~i~~~ 551 (555)
T TIGR01194 539 QIIKLAAGCIVKD 551 (555)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999754
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.83 E-value=2.9e-20 Score=207.15 Aligned_cols=148 Identities=18% Similarity=0.300 Sum_probs=108.4
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
....++||+|++.+++. ||+||+.|+.... ..++....+.+ ..++.++.+ .+..+|.
T Consensus 485 ~~g~iayv~Q~~~l~~~-Ti~eNI~~g~~~~--~~~~~~~~~~~------------------~L~~~l~~l--~~g~~t~ 541 (1490)
T TIGR01271 485 HSGRISFSPQTSWIMPG-TIKDNIIFGLSYD--EYRYTSVIKAC------------------QLEEDIALF--PEKDKTV 541 (1490)
T ss_pred ECCEEEEEeCCCccCCc-cHHHHHHhccccc--hHHHHHHHHHH------------------hHHHHHHhc--ccccccc
Confidence 33469999999988874 9999999864211 00000000000 012223322 2233566
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+|+ ....|||||||||+||||++.+|+++||||||+|||+.++..+++ +++++. .++|+|+++|++. . ...||+
T Consensus 542 vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~-~-~~~ad~ 616 (1490)
T TIGR01271 542 LGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE-H-LKKADK 616 (1490)
T ss_pred ccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH-H-HHhCCE
Confidence 665 356799999999999999999999999999999999999999997 466664 3789999998874 4 456999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
|++|++|+++..|+.++
T Consensus 617 ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 617 ILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred EEEEECCEEEEEcCHHH
Confidence 99999999999998664
No 344
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=5.5e-20 Score=190.56 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=102.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++||+|++.+++. |++||+.++....... . + +. ..+++.++++.+++.+..++..
T Consensus 514 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~-------~-----------~--~~-~~~~i~~~l~~~~l~~~~~~~~ 571 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK-------R-----------R--GL-SDKDLEQILDNVQLTHILEREG 571 (659)
T ss_pred CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh-------c-----------c--CC-CHHHHHHHHHHcCCHHHHhhcC
Confidence 5679999999988876 9999998754221000 0 0 00 0013667788888876554432
Q ss_pred c----CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 101 G----DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 101 g----~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
| ......||||||||++|||+|+++|++++|||||+|||+.+...+.+.+++ .|.|+|+++|++. ..+.|
T Consensus 572 g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~ 645 (659)
T TIGR00954 572 GWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYH 645 (659)
T ss_pred CcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhC
Confidence 2 113467999999999999999999999999999999999999999998865 2789999988764 45789
Q ss_pred cceeeecC
Q 044411 177 DDIILMAE 184 (363)
Q Consensus 177 D~v~vL~~ 184 (363)
|++++|+.
T Consensus 646 d~il~l~~ 653 (659)
T TIGR00954 646 EYLLYMDG 653 (659)
T ss_pred CEEEEEeC
Confidence 99999963
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=7.8e-20 Score=189.03 Aligned_cols=134 Identities=24% Similarity=0.217 Sum_probs=106.4
Q ss_pred eEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccccc
Q 044411 23 LSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 100 (363)
.+||++|+. .+++.+||.||+.++..... .... ..++..+++.+++. +..++.+
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~----------~~~~--------------~~~~~~~l~~~~l~~~~~~~~~ 438 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEVM----------VNGR--------------PRHVLGYLQDFLFHPKRAMTPV 438 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhccccc----------ccch--------------HHHHHHHHHhcCCCHHHHhChh
Confidence 589999975 58899999999987532100 0000 01366788899985 4567666
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|+. ..+..+||+++
T Consensus 439 ~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~ 508 (635)
T PRK11147 439 K-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECW 508 (635)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEE
Confidence 5 59999999999999999999999999999999999999999999875 34888888764 58889999999
Q ss_pred eec-CCeEEEe
Q 044411 181 LMA-EGKILYH 190 (363)
Q Consensus 181 vL~-~G~iv~~ 190 (363)
+|+ +|++..+
T Consensus 509 ~l~~~g~i~~~ 519 (635)
T PRK11147 509 IFEGNGKIGRY 519 (635)
T ss_pred EEeCCCeEEEc
Confidence 997 7998643
No 346
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=4.5e-20 Score=158.71 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ +++.++||++++|++|+
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGR 159 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 3999999999999999999999999999999999999999999999975 488999988765 47888999999999999
Q ss_pred EEE
Q 044411 187 ILY 189 (363)
Q Consensus 187 iv~ 189 (363)
+++
T Consensus 160 i~~ 162 (163)
T cd03216 160 VVG 162 (163)
T ss_pred EEe
Confidence 875
No 347
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=2.7e-20 Score=199.72 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=117.0
Q ss_pred CccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc
Q 044411 16 GEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC 95 (363)
Q Consensus 16 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 95 (363)
|.......++||+|.+.+++ -||+|||.|+..+. ..+++...+.+..+++... |...
T Consensus 576 G~v~v~gsiaYv~Q~pWI~n-gTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~--------------------Lp~G 632 (1381)
T KOG0054|consen 576 GSVAVNGSVAYVPQQPWIQN-GTVRENILFGSPYD--EERYDKVIKACALKKDLEI--------------------LPFG 632 (1381)
T ss_pred ceEEEcCeEEEeccccHhhC-CcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhh--------------------cCCC
Confidence 44445567999999887664 79999999986542 1233333333333332222 2334
Q ss_pred ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 96 ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 96 ~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
-.|.+|+ ..-+||||||||+++|||+.++++|+|||.|.|++|++...+|.+ +|+.+- .++|+|++||+. +.+.
T Consensus 633 D~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql--~~L~ 707 (1381)
T KOG0054|consen 633 DLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQL--QFLP 707 (1381)
T ss_pred CcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCch--hhhh
Confidence 4566775 455699999999999999999999999999999999999999986 665543 478999999864 7888
Q ss_pred hhcceeeecCCeEEEecCCCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~~~ 197 (363)
.||.|++|++|+|...|+.++..
T Consensus 708 ~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 708 HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hCCEEEEecCCeEecccCHHHHH
Confidence 99999999999999999987543
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.1e-20 Score=189.10 Aligned_cols=135 Identities=18% Similarity=0.183 Sum_probs=105.7
Q ss_pred eeEEEEcccc--ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 22 KLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 22 ~~~~yv~Q~~--~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
..+||++|+. .+.+..|+.+++... .. ... ..++..+|+.+++. +..++
T Consensus 375 ~~igy~~Q~~~~~l~~~~~~~~~~~~~---~~------------~~~-------------~~~~~~~L~~~~l~~~~~~~ 426 (638)
T PRK10636 375 IKLGYFAQHQLEFLRADESPLQHLARL---AP------------QEL-------------EQKLRDYLGGFGFQGDKVTE 426 (638)
T ss_pred EEEEEecCcchhhCCccchHHHHHHHh---Cc------------hhh-------------HHHHHHHHHHcCCChhHhcC
Confidence 4689999974 345666777765310 00 000 01367889999996 35676
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+++|+. ..+..+||+
T Consensus 427 ~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~ 496 (638)
T PRK10636 427 ETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDD 496 (638)
T ss_pred chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCE
Confidence 665 59999999999999999999999999999999999999999999886 24 888888654 588899999
Q ss_pred eeeecCCeEE-EecCCC
Q 044411 179 IILMAEGKIL-YHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv-~~G~~~ 194 (363)
+++|++|+++ +.|+.+
T Consensus 497 i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 497 LYLVHDGKVEPFDGDLE 513 (638)
T ss_pred EEEEECCEEEEcCCCHH
Confidence 9999999987 666654
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.81 E-value=9.3e-20 Score=203.61 Aligned_cols=150 Identities=20% Similarity=0.195 Sum_probs=108.8
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-cccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL-DICADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~ 98 (363)
....++||+|++.++ +.||+||+.|+.... . +.. +... ++-.+.+.++. .+..+|
T Consensus 697 ~~g~i~yv~Q~~~l~-~~Ti~eNI~~g~~~~--~---~~~------~~~~------------~~~~l~~~l~~~~~g~~t 752 (1522)
T TIGR00957 697 MKGSVAYVPQQAWIQ-NDSLRENILFGKALN--E---KYY------QQVL------------EACALLPDLEILPSGDRT 752 (1522)
T ss_pred ECCEEEEEcCCcccc-CCcHHHHhhcCCccC--H---HHH------HHHH------------HHhCCHHHHHhcCCCCCc
Confidence 334699999998765 579999999863211 0 000 0000 01111223332 334466
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHh-hcCCCEEEEEecCCChHHHhhhc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA-HITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~-~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.+|+ ....||||||||++||||++.+|++++|||||++||+.+...+.+.+.+.. ...++|+|+++|++. ....||
T Consensus 753 ~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D 829 (1522)
T TIGR00957 753 EIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVD 829 (1522)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCC
Confidence 7775 456799999999999999999999999999999999999999999886431 123689999998874 345699
Q ss_pred ceeeecCCeEEEecCCCCC
Q 044411 178 DIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~~~ 196 (363)
+|++|++|+++..|+.++.
T Consensus 830 ~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 830 VIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred EEEEecCCeEEeeCCHHHH
Confidence 9999999999999987643
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=1.9e-19 Score=156.24 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=82.2
Q ss_pred HHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 84 DYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGP--IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 84 ~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~--P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
.+.++.++|.. ..+..+ +.||||||||++||++|+.+ |+++||||||+|||+.++..+.+.|+++++ .|.|
T Consensus 68 ~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~t 141 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNT 141 (176)
T ss_pred HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCE
Confidence 34688889875 355544 46999999999999999999 999999999999999999999999999875 5899
Q ss_pred EEEEecCCChHHHhhhcceeeecCCeEE
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGKIL 188 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~iv 188 (363)
||+++|++. .+ ..||++++|.+|...
T Consensus 142 vIivSH~~~-~~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 142 VILIEHNLD-VL-SSADWIIDFGPGSGK 167 (176)
T ss_pred EEEEeCCHH-HH-HhCCEEEEECCCCCC
Confidence 999988764 44 689999999776543
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=1e-19 Score=185.68 Aligned_cols=96 Identities=23% Similarity=0.288 Sum_probs=86.5
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+++++++.+||.+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |.||
T Consensus 192 ~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tv 264 (590)
T PRK13409 192 KLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYV 264 (590)
T ss_pred HHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEE
Confidence 37788999999988887776 5999999999999999999999999999999999999999999999975 7899
Q ss_pred EEEecCCChHHHhhhcceeeecCC
Q 044411 162 LISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
|+++|+. +.+..+||++++|.+|
T Consensus 265 IivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 265 LVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9988765 5888999999999764
No 352
>PTZ00243 ABC transporter; Provisional
Probab=99.80 E-value=3.6e-19 Score=198.73 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=107.4
Q ss_pred CccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCc
Q 044411 16 GEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLD 93 (363)
Q Consensus 16 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~ 93 (363)
|....++.+||++|++.++ ..||+||+.|+.... .....+ ..+. ..+++.++.+ |+.
T Consensus 715 G~i~~~~~i~yv~Q~~~l~-~~Tv~enI~~~~~~~-----~~~~~~---~~~~------------~~l~~~l~~l~~g~~ 773 (1560)
T PTZ00243 715 GRVWAERSIAYVPQQAWIM-NATVRGNILFFDEED-----AARLAD---AVRV------------SQLEADLAQLGGGLE 773 (1560)
T ss_pred cEEEECCeEEEEeCCCccC-CCcHHHHHHcCChhh-----HHHHHH---HHHH------------hhhHHHHHHhhccch
Confidence 4333456799999998876 579999999853110 000000 0000 0133445554 443
Q ss_pred ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHH-HHHhhcCCCEEEEEecCCChHH
Q 044411 94 ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCL-QHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 94 ~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l-~~l~~~~g~tii~~~h~~~~~~ 172 (363)
+.+|. ....|||||||||+|||||+.+|+++||||||++||+.++..+++.+ ... . .|+|+|+++|++. .
T Consensus 774 ----t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~-~~~TvIlvTH~~~--~ 844 (1560)
T PTZ00243 774 ----TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA-L-AGKTRVLATHQVH--V 844 (1560)
T ss_pred ----HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-h-CCCEEEEEeCCHH--H
Confidence 33332 35679999999999999999999999999999999999999988743 333 2 3789999998763 4
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
...||+|++|++|++++.|+.++.
T Consensus 845 ~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 845 VPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHhCCEEEEEECCEEEEecCHHHH
Confidence 468999999999999999987643
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.80 E-value=4.7e-19 Score=184.12 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=85.9
Q ss_pred hHHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 82 KTDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 82 ~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
++..+++.+|+.+ ..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|.+. .+ |
T Consensus 606 ~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-t 676 (718)
T PLN03073 606 KLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-G 676 (718)
T ss_pred HHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-E
Confidence 3677899999974 556555 469999999999999999999999999999999999999998888764 24 8
Q ss_pred EEEEecCCChHHHhhhcceeeecCCeEE-EecC
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGKIL-YHGP 192 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~iv-~~G~ 192 (363)
||+++|+. ..+..+||++++|.+|+++ +.|+
T Consensus 677 vIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~ 708 (718)
T PLN03073 677 VLMVSHDE-HLISGSVDELWVVSEGKVTPFHGT 708 (718)
T ss_pred EEEEECCH-HHHHHhCCEEEEEECCEEEEeCCC
Confidence 88888765 5888899999999999987 5554
No 354
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=152.15 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=122.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 98 (363)
.++.+...+|.|.-+|..|+.+.|..+......... . ..+...++++.++.+++++ .+++
T Consensus 79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~------~-------------~~~~~~~~~e~~~~l~~~~~~l~R 139 (251)
T COG0396 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARG------I-------------LPEFIKELKEKAELLGLDEEFLER 139 (251)
T ss_pred HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhcccc------c-------------cHHHHHHHHHHHHHcCCCHHHhhc
Confidence 456788999999999999999999887654321110 0 0011224788899999986 6777
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh--
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF-- 176 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~-- 176 (363)
.+. .|+|||||||..|+.+++.+|++.+||||-||||..+-..|.+.+.+++. .|.+++++||. ..++++.
T Consensus 140 ~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy--~rll~~i~p 212 (251)
T COG0396 140 YVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHY--QRLLDYIKP 212 (251)
T ss_pred ccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecH--HHHHhhcCC
Confidence 665 48999999999999999999999999999999999999999999999986 48888888875 4788877
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|+|.+|.+|+|+..|.++
T Consensus 213 D~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 213 DKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred CEEEEEECCEEEecCCHH
Confidence 999999999999999864
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2e-19 Score=169.45 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=109.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.||.|||+..+|. -|...|+.++..-. ...+..+.. +...+...++ .+.+..++.
T Consensus 335 lR~aIg~VPQDtvLFN-Dti~yni~ygr~~a------------t~eev~aaa-------~~aqi~~fi~--~lP~gy~t~ 392 (497)
T COG5265 335 LRRAIGIVPQDTVLFN-DTIAYNIKYGRPDA------------TAEEVGAAA-------EAAQIHDFIQ--SLPEGYDTG 392 (497)
T ss_pred HHHHhCcCcccceehh-hhHHHHHhccCccc------------cHHHHHHHH-------HHhhhhHHHH--hCchhhhcc
Confidence 5788999999877765 58888888753211 001110000 0001122222 367778999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
||....+ |||||||||+|||+++.+|+||+|||.||+||..+.+.|...|+++++ |.|.+++.|..+ .+ --+|.|
T Consensus 393 Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrls-ti-~~adei 467 (497)
T COG5265 393 VGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLS-TI-IDADEI 467 (497)
T ss_pred cchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhh-hc-cCCceE
Confidence 9974333 899999999999999999999999999999999999999999999874 667666677665 33 358999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+|++.|+.++
T Consensus 468 ivl~~g~i~erg~h~~ 483 (497)
T COG5265 468 IVLDNGRIVERGTHEE 483 (497)
T ss_pred EEeeCCEEEecCcHHH
Confidence 9999999999988653
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=5.5e-19 Score=153.46 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCeE
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKI 187 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~i 187 (363)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.+.|+|+++|+. ..+..+||++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999999998765448999988765 577889999999988765
Q ss_pred EEe--cCCC
Q 044411 188 LYH--GPRK 194 (363)
Q Consensus 188 v~~--G~~~ 194 (363)
++. |.+.
T Consensus 151 ~~~~~~~~~ 159 (177)
T cd03222 151 VYGIASQPK 159 (177)
T ss_pred cceeccCCc
Confidence 543 4443
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=2.4e-19 Score=146.99 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=103.0
Q ss_pred ccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC
Q 044411 12 LSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG 91 (363)
Q Consensus 12 ~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 91 (363)
++++-.+..+|.+|..+|++.+||.++|.+|+.|+.... +.+..++ ..++..|+..|
T Consensus 67 ~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~-----------~KG~aRr------------~~a~aAL~~~g 123 (213)
T COG4136 67 QRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT-----------LKGNARR------------NAANAALERSG 123 (213)
T ss_pred eeccccchhhhheeeeecccccccccccccceEEecCcc-----------cccHHHH------------hhHHHHHHHhc
Confidence 344445667899999999999999999999999874321 1111111 12677899999
Q ss_pred CcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 92 LDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 92 L~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
|....++-. .+||||||-||++-|+|+..|+.++||||+|.||..-+.++.+.+-.-.+..|..++.++|+..
T Consensus 124 L~g~f~~dP-----~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 124 LDGAFHQDP-----ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred cchhhhcCh-----hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 998877654 4699999999999999999999999999999999999999998766555556888888887653
No 358
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3e-19 Score=170.52 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=112.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.|+.||.||||..+|+ -|+..|+.|+.. ....+...+ ..+. ++-.-+.+++.+..+|.
T Consensus 610 LRs~IGVVPQDtvLFN-dTI~yNIryak~----~Asneevya---AAkA--------------A~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 610 LRSSIGVVPQDTVLFN-DTILYNIRYAKP----SASNEEVYA---AAKA--------------AQIHDRILQFPEGYNTR 667 (790)
T ss_pred HHHhcCcccCcceeec-ceeeeheeecCC----CCChHHHHH---HHHH--------------hhHHHHHhcCchhhhhh
Confidence 5678999999888776 488888887531 110010000 0000 11112347889999999
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
||++-. .|||||||||+|||+++..|.+++|||.||+||..+.+.|...|.++++ ++|.|++.|..+ .+ --+|.|
T Consensus 668 VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS-Ti-vnAD~I 742 (790)
T KOG0056|consen 668 VGERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS-TI-VNADLI 742 (790)
T ss_pred hhhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh-he-ecccEE
Confidence 997433 3899999999999999999999999999999999999999999999996 456556667665 33 369999
Q ss_pred eeecCCeEEEecCCCCC
Q 044411 180 ILMAEGKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~~ 196 (363)
+++++|+|++-|..++.
T Consensus 743 Lvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEEL 759 (790)
T ss_pred EEEeCCeEeecCcHHHH
Confidence 99999999999987644
No 359
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2e-18 Score=178.42 Aligned_cols=102 Identities=22% Similarity=0.312 Sum_probs=88.4
Q ss_pred hHHHHHHHcCCc-ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 82 KTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 82 ~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
++..+++.+|+. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|
T Consensus 128 ~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~t 198 (638)
T PRK10636 128 RAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGT 198 (638)
T ss_pred HHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCe
Confidence 588899999997 46677665 59999999999999999999999999999999999999999998875 358
Q ss_pred EEEEecCCChHHHhhhcceeeecCCeEE-EecCC
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGKIL-YHGPR 193 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~iv-~~G~~ 193 (363)
||+++|+. ..+..+||++++|++|++. |.|+.
T Consensus 199 viivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 199 LILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred EEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCH
Confidence 88887654 5888999999999999986 45544
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=9.2e-18 Score=140.98 Aligned_cols=109 Identities=25% Similarity=0.370 Sum_probs=93.1
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEE
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 162 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii 162 (363)
+.+.|+.+.++... + ++.++..|||+|||+.|||-|++.|++.|+||||.|||...+..++++++.+..+.+.+++
T Consensus 131 a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 131 AQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHhcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 45667777775322 1 2456889999999999999999999999999999999999999999999999988899999
Q ss_pred EEecCCChHHHhhhcceeeecCCeEEEecCCCCC
Q 044411 163 ISLLQPSPETFDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 163 ~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
+++|+. ..+.-++||.++|++|+++..|-++..
T Consensus 207 iVTHDl-~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 207 IVTHDL-AVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred EEechh-HHHHHhhhcceeecCCCEecccccccc
Confidence 988765 356668999999999999999987743
No 361
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.75 E-value=2.8e-18 Score=144.51 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
..||+||+||++|||+|+.+|++++|||||+|||+.++..+.+.++++ +.|+++++|++ +++..+||++++|++|
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g 143 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDG 143 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCC
Confidence 349999999999999999999999999999999999999999999876 35888888765 5788899999999998
Q ss_pred e
Q 044411 186 K 186 (363)
Q Consensus 186 ~ 186 (363)
+
T Consensus 144 ~ 144 (144)
T cd03221 144 K 144 (144)
T ss_pred C
Confidence 5
No 362
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=4.4e-18 Score=175.99 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=86.2
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
++.++++.+|+.. ++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .||
T Consensus 138 ~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~tv 206 (635)
T PRK11147 138 RINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----GSI 206 (635)
T ss_pred HHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC----CEE
Confidence 5888999999963 4444 4699999999999999999999999999999999999999999998862 488
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEE-EecCC
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKIL-YHGPR 193 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv-~~G~~ 193 (363)
|+++|+. ..+.++||+|++|++|+++ +.|+.
T Consensus 207 livsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 207 IFISHDR-SFIRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred EEEeCCH-HHHHHhcCeEEEEECCEEEEecCCH
Confidence 8887655 5888999999999999987 44554
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=165.77 Aligned_cols=154 Identities=23% Similarity=0.209 Sum_probs=111.8
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhcc-CCCchhh------------hhhhcHHHHhhhcCCCCCcchhhhHHHHHHH
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQG-VGSRADI------------LLELSGREEEARIIPDPDIDTYMKTDYNLKI 89 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 89 (363)
.++|++|+....+..||.+.+.-+..... .....+. ..++........- .+...++..++..
T Consensus 67 ~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~e~~~~~~L~g 141 (530)
T COG0488 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDG-----WTLEARAEEALLG 141 (530)
T ss_pred eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcc-----cchHHHHHHHHhc
Confidence 69999999999999999999876532110 0000000 0000000000000 1112358888999
Q ss_pred cCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 90 LGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 90 lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
+|+.+. +++++ +||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|+++ |+.
T Consensus 142 Lg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVS-HDR 210 (530)
T COG0488 142 LGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVS-HDR 210 (530)
T ss_pred CCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEe-CCH
Confidence 999877 77766 59999999999999999999999999999999999999999999864 35 777776 466
Q ss_pred hHHHhhhcceeeecCCeEE-EecC
Q 044411 170 PETFDLFDDIILMAEGKIL-YHGP 192 (363)
Q Consensus 170 ~~~~~~~D~v~vL~~G~iv-~~G~ 192 (363)
..+-+.|++|+-++.|++. |.|.
T Consensus 211 ~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 211 YFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHhhheEEecCCceeEecCC
Confidence 7899999999999999874 4444
No 364
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=1.1e-17 Score=177.03 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=89.5
Q ss_pred HHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEE
Q 044411 86 NLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 162 (363)
Q Consensus 86 ~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii 162 (363)
.|+.+||.+. .|+.++ .|||||+|||.||++|+.+| ++++|||||+|||+..+..+++.|+++++ .|.|||
T Consensus 472 ~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLI 545 (943)
T ss_pred HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 6888999865 676665 59999999999999999997 99999999999999999999999999975 589999
Q ss_pred EEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 163 ISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 163 ~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
+++|++. ++ ..||+|++| ++|++++.|++++
T Consensus 546 vVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 546 VVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred EEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHH
Confidence 9987754 55 469999999 8999999998764
No 365
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.6e-17 Score=175.30 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=87.5
Q ss_pred HHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 85 YNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 85 ~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+.+..+||... .++.+ .+|||||+|||.||++|+.+| .+++|||||+|||+.....+++.|+++++ .|.||
T Consensus 469 ~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TV 542 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTV 542 (924)
T ss_pred HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 34677888754 45544 469999999999999999986 89999999999999999999999999976 48899
Q ss_pred EEEecCCChHHHhhhcceeee------cCCeEEEecCCC
Q 044411 162 LISLLQPSPETFDLFDDIILM------AEGKILYHGPRK 194 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~ 194 (363)
|+++|++. .+ ..||+|++| ++|++++.|+++
T Consensus 543 IvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~ 579 (924)
T TIGR00630 543 IVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPE 579 (924)
T ss_pred EEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHH
Confidence 99987753 44 589999999 899999998765
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=141.89 Aligned_cols=118 Identities=24% Similarity=0.302 Sum_probs=99.9
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+..-|+...+.+=+.+||.|||.|.....+... ...+.+.++.+||....|.+++
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~-------------------------~~~i~~Al~~vgL~g~~dlp~~ 129 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGN-------------------------AATIWEALAQVGLAGLEDLPVG 129 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCc-------------------------hhhHHHHHHHcCcccccccchh
Confidence 445677778888999999999999765543210 0137778999999999999887
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
. ||-||||||+|||-++..+++.|||||+++||......+-.++..-+. .|..||.+||||..
T Consensus 130 ~-----LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~ 192 (209)
T COG4133 130 Q-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLP 192 (209)
T ss_pred h-----cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccC
Confidence 5 999999999999999999999999999999999999999999998876 47788899999874
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=1.1e-17 Score=174.01 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=88.2
Q ss_pred hhHHHHHHHcCCc-ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCC
Q 044411 81 MKTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDA 159 (363)
Q Consensus 81 ~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ 159 (363)
.++..+++.+|+. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~ 392 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PK 392 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CC
Confidence 3577788888986 44555554 59999999999999999999999999999999999999999999875 56
Q ss_pred EEEEEecCCChHHHhhhcceeeecCCeEE-EecCCC
Q 044411 160 TILISLLQPSPETFDLFDDIILMAEGKIL-YHGPRK 194 (363)
Q Consensus 160 tii~~~h~~~~~~~~~~D~v~vL~~G~iv-~~G~~~ 194 (363)
|+|+++|+ ...+..+||++++|++|++. |.|+.+
T Consensus 393 tviivsHd-~~~l~~~~d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 393 TFIVVSHA-REFLNTVVTDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred EEEEEECC-HHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 88888875 45788899999999999986 566543
No 368
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=2.6e-17 Score=174.13 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=90.6
Q ss_pred HHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 83 TDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 83 v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
..+.++.+||.. ..+..+ ..|||||+||+.||++|+.+| ++++|||||+|||+.....+++.|+++.+ .|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G 883 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KG 883 (943)
T ss_pred HHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456788999975 355544 469999999999999999999 99999999999999999999999999975 48
Q ss_pred CEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 159 ATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 159 ~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
.|||+++|++. .+ ..||+|+.| ++|++++.|++++
T Consensus 884 ~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 884 NTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 89999988763 44 689999999 7899999998764
No 369
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=7.9e-17 Score=136.42 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=117.7
Q ss_pred eeEEEEccccc--cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 22 KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 22 ~~~~yv~Q~~~--~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
+.|-+++|++. +-|.+.+..-|..+.++... +.... ..+++-+.|+.+||- +.++-
T Consensus 87 k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~---------~~~~~------------R~~~i~~TL~~VGL~Pdhan~ 145 (267)
T COG4167 87 KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD---------LEPEQ------------RRKQIFETLRMVGLLPDHANY 145 (267)
T ss_pred hheeeeecCCccccChhhhhhhHhcchhhhccc---------CChHH------------HHHHHHHHHHHhccCcccccc
Confidence 56889999875 55777777776665543321 11111 112578889999984 45554
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+++.||-||||||++||||+.+|+|++.||..++||...+.++.+++-++.++.|.+-|.++ |+.--+..++|.
T Consensus 146 -----~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~-QhlG~iKHi~D~ 219 (267)
T COG4167 146 -----YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVT-QHIGMIKHISDQ 219 (267)
T ss_pred -----chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEe-chhhHhhhhccc
Confidence 44679999999999999999999999999999999999999999999999988899988877 455588899999
Q ss_pred eeeecCCeEEEecCCCCC
Q 044411 179 IILMAEGKILYHGPRKVC 196 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~ 196 (363)
|+||++|++++.|++.+.
T Consensus 220 viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 220 VLVMHEGEVVERGSTADV 237 (267)
T ss_pred EEEEecCceeecCChhhh
Confidence 999999999999988743
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.3e-17 Score=140.88 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
|||||+||++||++++.+|++++|||||+|||+.++..+.+.++++++. +.|+++++|+. ..+..+||+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999999999998764 78999988765 47778899999999875
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.71 E-value=4e-17 Score=144.61 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=72.5
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||||+|||+.....+.+.|+++++ +
T Consensus 97 ~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~ 166 (197)
T cd03278 97 VSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--E 166 (197)
T ss_pred HHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--C
Confidence 4555555 33344443 469999999999999987 56799999999999999999999999999864 5
Q ss_pred CEEEEEecCCChHHHhhhcceeeecC
Q 044411 159 ATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 159 ~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
.|||+++|++. . ...||+++.+..
T Consensus 167 ~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 167 TQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CEEEEEECCHH-H-HhhcceEEEEEe
Confidence 78998888763 4 578999999864
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=4.1e-17 Score=149.31 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=90.4
Q ss_pred cceeEEEEccccccCC-CCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 20 PQKLSAYVSQYDLHIP-EMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~-~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.++.++|++|+..+++ ..|..|...+.... +..... . .... ....+.+.+++.+..+.
T Consensus 96 i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~--~---------~~~~---------~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 96 LRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSN--P---------YYIV---------PQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCC--C---------cEEE---------EcCchHHhhhccccccc
Confidence 4566888888877776 46776655543322 111000 0 0000 01122333444443343
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
. ++.||||||||++||++|+ .+|++++|||||+|||+.++..+++.|+++++ +.++|+++ |. .++.+
T Consensus 155 ~-----~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~-h~-~~~~~ 225 (243)
T cd03272 155 E-----MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTT-FR-PELLE 225 (243)
T ss_pred c-----ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEe-cC-HHHHh
Confidence 3 3569999999999999997 36899999999999999999999999999864 56666654 44 47889
Q ss_pred hhcceeeec
Q 044411 175 LFDDIILMA 183 (363)
Q Consensus 175 ~~D~v~vL~ 183 (363)
+||++++|.
T Consensus 226 ~~d~i~~l~ 234 (243)
T cd03272 226 VADKFYGVK 234 (243)
T ss_pred hCCEEEEEE
Confidence 999999985
No 373
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7.3e-17 Score=170.40 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=88.8
Q ss_pred HHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhC---CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 83 TDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVG---PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 83 v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~---~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
..++++.+||.. ..+..+ +.|||||+||+.||++|+. +|++++|||||+|||+..+..+++.|+++.+ .|
T Consensus 808 ~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G 881 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QG 881 (924)
T ss_pred HHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456788899975 345444 4699999999999999997 5999999999999999999999999999975 48
Q ss_pred CEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCC
Q 044411 159 ATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRK 194 (363)
Q Consensus 159 ~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~ 194 (363)
.|||+++|++. .+ ..||++++| ++|++++.|+++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 89999887764 44 679999999 799999999865
No 374
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.71 E-value=6.4e-17 Score=155.72 Aligned_cols=152 Identities=21% Similarity=0.242 Sum_probs=116.7
Q ss_pred ceeEEEEcccc---ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-cc
Q 044411 21 QKLSAYVSQYD---LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~---~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 96 (363)
+..++|||.+- .+.+.+|+.||+.+.......-.+.. +.. .... .....++++.+++.. ..
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g-~l~---~~~i-----------~~~a~~li~~fdVr~~~~ 397 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGG-FLD---RRAI-----------RKFARELIEEFDVRAPSP 397 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhcccccccccc-ccC---HHHH-----------HHHHHHHHHHcCccCCCC
Confidence 35699999874 57899999999988654321101100 001 0000 113677889998863 23
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+.+ .+.||||++||+-+||.|..+|++|+..+||.|||..+...|.+.|.+.++ .|+.|++++ .+.+|++++|
T Consensus 398 ~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS-~dLDEil~ls 470 (501)
T COG3845 398 DAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLIS-EDLDEILELS 470 (501)
T ss_pred Ccc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEe-hhHHHHHHhh
Confidence 333 456999999999999999999999999999999999999999999999986 588888876 5667999999
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|||.+|++|+++...+++
T Consensus 471 DrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 471 DRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred heeeeeeCCceecccccc
Confidence 999999999999777665
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.70 E-value=3.4e-17 Score=150.67 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=98.2
Q ss_pred ceeEEEEcccc---------ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC
Q 044411 21 QKLSAYVSQYD---------LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG 91 (363)
Q Consensus 21 ~~~~~yv~Q~~---------~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 91 (363)
...+++++|++ .+.|.+||.+++.+....... .... . ....++.++++.+|
T Consensus 76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~------in~~-~-------------~~~~~v~~~L~~vg 135 (251)
T cd03273 76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYL------INGH-R-------------AQQQRVQDLFQSVQ 135 (251)
T ss_pred EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEE------ECCE-E-------------eeHHHHHHHHHHcC
Confidence 34788999984 345788999888654311100 0000 0 00124777788888
Q ss_pred Cc--------------------ccccccccCCcCCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHH
Q 044411 92 LD--------------------ICADTLVGDAIRRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIV 147 (363)
Q Consensus 92 L~--------------------~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~ 147 (363)
+. +..+. .+..||||||||++||++|+ .+|+++++||||+|||+..+..+.
T Consensus 136 L~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~ 210 (251)
T cd03273 136 LNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIG 210 (251)
T ss_pred CCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHH
Confidence 75 22233 34579999999999999997 588999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeec
Q 044411 148 TCLQHLAHITDATILISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 148 ~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~ 183 (363)
+.|+++++ |.++|+++|. .++.+.||+++-+.
T Consensus 211 ~~l~~~~~--g~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 211 RMIKTHFK--GSQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHcC--CCEEEEEECC--HHHHHhCCEEEEEE
Confidence 99999853 7789998887 47888999998774
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2e-17 Score=138.45 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=103.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||.|.-..+|..+..|.+.-.+..++... + .+..++..++.++++.+..-.+.
T Consensus 92 r~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~-----------~-----------~a~~~a~~Ll~rLnlperLW~La 149 (235)
T COG4778 92 RTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-----------E-----------VARAKAADLLTRLNLPERLWSLA 149 (235)
T ss_pred HhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCH-----------H-----------HHHHHHHHHHHHcCCCHHHhcCC
Confidence 4679999998888888887777665443333210 0 11235788899999976544332
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+.+.||||||||.|||.++.+-+||+|||||+.||..++..++++|++-+ ..|.+++=+- |+.+.-...|||++
T Consensus 150 ----PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIF-HDeevre~vadR~~ 223 (235)
T COG4778 150 ----PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIF-HDEEVREAVADRLL 223 (235)
T ss_pred ----CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEEee-ccHHHHHHHhhhee
Confidence 35799999999999999999999999999999999999999999999865 4587777655 45445566899998
Q ss_pred eecC
Q 044411 181 LMAE 184 (363)
Q Consensus 181 vL~~ 184 (363)
-+..
T Consensus 224 ~~~~ 227 (235)
T COG4778 224 DVSA 227 (235)
T ss_pred eccc
Confidence 8754
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=5.8e-18 Score=151.67 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=101.1
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|....+|.+|++|++.+.....+.. .++ ..++.... ........++++.++|.+..++.++
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~------~~g~~~~~-~~~~v~~~~~~~~~~L~~~~~~~~~ 126 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKP-----LLK------SKGIDLDH-NRFLILQGEVEQIAQMPKKSWKNIS 126 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHH-----HHH------HCCcCCCC-CceEEcCCcEEEeeccccccccchh
Confidence 56899999999999999999877654332100 000 00000000 0000002345567778777776654
Q ss_pred CCcCCCCChHHHHHHHHHHHHhC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVG----PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~----~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.||+|||||++||++++. +|++++|||||+|||+.++..+.+.++++++ +.++|+++|+ .++.++||
T Consensus 127 -----~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~--~~~~~~~d 197 (212)
T cd03274 127 -----NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLR--NNMFELAD 197 (212)
T ss_pred -----hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECc--HHHHHhCC
Confidence 599999999999999963 5899999999999999999999999999863 4567777776 37889999
Q ss_pred ceeeecC
Q 044411 178 DIILMAE 184 (363)
Q Consensus 178 ~v~vL~~ 184 (363)
++++|..
T Consensus 198 ~v~~~~~ 204 (212)
T cd03274 198 RLVGIYK 204 (212)
T ss_pred EEEEEEe
Confidence 9999964
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.69 E-value=1.5e-16 Score=175.46 Aligned_cols=103 Identities=23% Similarity=0.275 Sum_probs=89.8
Q ss_pred HHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHh---CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 85 YNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLV---GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 85 ~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~---~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
++++.+||.+. .+..+. .||||||||+.||++|+ .+|+++||||||+|||+.+...+++.|+++++ .|.|
T Consensus 791 ~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~T 864 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHT 864 (1809)
T ss_pred HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Confidence 47888999875 566554 59999999999999997 69999999999999999999999999999976 4889
Q ss_pred EEEEecCCChHHHhhhcceeeec------CCeEEEecCCCC
Q 044411 161 ILISLLQPSPETFDLFDDIILMA------EGKILYHGPRKV 195 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~------~G~iv~~G~~~~ 195 (363)
||+++|++. .+ ..||++++|. +|++++.|++++
T Consensus 865 VIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 865 VVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 999887764 55 8999999996 789999998864
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.68 E-value=9.2e-17 Score=143.11 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCCCChHHHHH------HHHHHHHhCCCcEEEEeCCCCCCCHHhHH-HHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 105 RRGISGGQKRR------LTTGEMLVGPIKAMFMDKITNGLDISTSF-QIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 105 ~~~LSGGqrqR------v~ia~aL~~~P~lLlLDEPtsGLD~~~~~-~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
++.||+||+|| ++||++++.+|+++++||||+|||+..+. .+.+.|++++++.+.++|+++|++ +....||
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCC
Confidence 35699999996 78899999999999999999999999999 999999998764478999998875 3456899
Q ss_pred ceeeecC
Q 044411 178 DIILMAE 184 (363)
Q Consensus 178 ~v~vL~~ 184 (363)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999954
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.66 E-value=2.5e-16 Score=141.40 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHHHHHHHhC----------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 105 RRGISGGQKRRLTTGEMLVG----------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~----------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ .+.|+|+++|++ +.+..
T Consensus 121 ~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~ 198 (213)
T cd03279 121 VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKER 198 (213)
T ss_pred ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHh
Confidence 35699999999999999985 5789999999999999999999999999875 478999988866 57888
Q ss_pred hhcceeeecCCe
Q 044411 175 LFDDIILMAEGK 186 (363)
Q Consensus 175 ~~D~v~vL~~G~ 186 (363)
.+|+++++++|.
T Consensus 199 ~~~~i~~~~~~~ 210 (213)
T cd03279 199 IPQRLEVIKTPG 210 (213)
T ss_pred hCcEEEEEecCC
Confidence 999999999875
No 381
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.1e-15 Score=135.77 Aligned_cols=147 Identities=19% Similarity=0.149 Sum_probs=120.6
Q ss_pred cceeEEEEccc-cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 20 PQKLSAYVSQY-DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~-~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.+..++++..- -.+-|++|.+||+.+...+.+.. ..+-. .+++++++.-+|.+..|.
T Consensus 86 v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~----------~~ei~------------~~~~eIieFaELG~fi~~ 143 (249)
T COG1134 86 VTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT----------RKEID------------EKVDEIIEFAELGDFIDQ 143 (249)
T ss_pred EcceEehhhhcccCCCcccchHHHHHHHHHHhCcc----------HHHHH------------HHHHHHHHHHHHHHHhhC
Confidence 33445544333 45679999999999977655432 12211 258889999999999998
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
++. ..|-||+-|++.|.+...+|++||+||-.+--|+.-+.+-.+.+.++.++ +.|||+++|++ ..+.++||+
T Consensus 144 Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~-~~I~~~Cd~ 216 (249)
T COG1134 144 PVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDL-GAIKQYCDR 216 (249)
T ss_pred chh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCH-HHHHHhcCe
Confidence 875 59999999999999999999999999999999999999999999999764 68888888765 589999999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
+++|++|++.+.|++++
T Consensus 217 ~i~l~~G~i~~~G~~~~ 233 (249)
T COG1134 217 AIWLEHGQIRMEGSPEE 233 (249)
T ss_pred eEEEeCCEEEEcCCHHH
Confidence 99999999999998764
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.65 E-value=4.3e-16 Score=171.77 Aligned_cols=101 Identities=22% Similarity=0.398 Sum_probs=87.5
Q ss_pred HHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEE
Q 044411 87 LKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILI 163 (363)
Q Consensus 87 l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~ 163 (363)
|..+||.+. .++.++ +|||||+|||.||++|..+| ++|+|||||+|||+..+..+.+.|+++++ .|.|||+
T Consensus 460 L~~vGL~~L~ldR~~~-----tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIv 533 (1809)
T PRK00635 460 LIDLGLPYLTPERALA-----TLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLL 533 (1809)
T ss_pred HHhccccCCCCCCchh-----hCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 556788765 466554 59999999999999999999 89999999999999999999999999986 4889999
Q ss_pred EecCCChHHHhhhcceeeec------CCeEEEecCCCC
Q 044411 164 SLLQPSPETFDLFDDIILMA------EGKILYHGPRKV 195 (363)
Q Consensus 164 ~~h~~~~~~~~~~D~v~vL~------~G~iv~~G~~~~ 195 (363)
++|+.. +.+.||+|++|. +|++++.|++++
T Consensus 534 VeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~e 569 (1809)
T PRK00635 534 VEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPRE 569 (1809)
T ss_pred EeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHH
Confidence 887753 678999999996 789999987653
No 383
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=3.7e-16 Score=168.22 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=110.1
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
..|++++.+||++.+|. -|||.||.-..... ..+.+..+ +.. ..++.++ .++...|+
T Consensus 1211 dLRsrlsIIPQdPvLFs-GTvR~NLDPf~e~s----D~~IW~AL----e~~------------~Lk~~v~--~~p~~Ld~ 1267 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFS-GTVRFNLDPFDEYS----DDEIWEAL----ERC------------QLKDVVS--SLPGGLDS 1267 (1381)
T ss_pred HHHhcCeeeCCCCceec-CccccccCcccccC----HHHHHHHH----HHh------------ChHHHHh--hCCcCCCc
Confidence 46889999999999886 59999995322110 00111000 000 1233333 22333455
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+.+ ...++|-||||.+++||||+++++||+|||.|+++|+.+-..|.+.|++-- .++||+.+.|... .+. -+||
T Consensus 1268 ~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~-TVm-d~Dr 1342 (1381)
T KOG0054|consen 1268 EVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLN-TVM-DSDR 1342 (1381)
T ss_pred eecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccc-hhh-hcCe
Confidence 5543 456799999999999999999999999999999999999999999999854 4789998877664 444 4899
Q ss_pred eeeecCCeEEEecCCCCCC
Q 044411 179 IILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~~~ 197 (363)
|+||++|+++++|+|....
T Consensus 1343 VlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred EEEeeCCeEeecCChHHHH
Confidence 9999999999999987543
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.64 E-value=5.7e-16 Score=137.33 Aligned_cols=95 Identities=18% Similarity=0.080 Sum_probs=75.2
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHH----hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhc-
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEML----VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI- 156 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL----~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~- 156 (363)
+++++++. .+..++.+ +.||||||||++||+++ +.+|++++|||||+|||+..+..+.+.|++++++
T Consensus 92 ~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~ 163 (198)
T cd03276 92 MARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ 163 (198)
T ss_pred HHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 35555655 44455544 46999999999999999 5999999999999999999999999999998654
Q ss_pred -CCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 157 -TDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 157 -~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
.+.+|++++|+. +++..+ |+|.+|..|.
T Consensus 164 ~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 164 PGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred CCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 235788877655 466665 9999997654
No 385
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.60 E-value=5.1e-15 Score=148.17 Aligned_cols=128 Identities=24% Similarity=0.230 Sum_probs=100.9
Q ss_pred eeEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-ccccc
Q 044411 22 KLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 99 (363)
-.+||.+|+. .+.+..|+.|++.-...- .. ...+...|..|++.. ...++
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~~------------~~----------------e~~~r~~L~~f~F~~~~~~~~ 436 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFPD------------GD----------------EQEVRAYLGRFGFTGEDQEKP 436 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCcc------------cc----------------HHHHHHHHHHcCCChHHHhCc
Confidence 4599999986 445888999988542200 00 013677899999863 44555
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
|+ .||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. ..|||+++|+ ...+..+|+++
T Consensus 437 v~-----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i 506 (530)
T COG0488 437 VG-----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHD-RYFLDRVATRI 506 (530)
T ss_pred hh-----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceE
Confidence 54 59999999999999999999999999999999999999999999875 3478877765 56899999999
Q ss_pred eeecCCeEE
Q 044411 180 ILMAEGKIL 188 (363)
Q Consensus 180 ~vL~~G~iv 188 (363)
+.+.+ ++.
T Consensus 507 ~~~~~-~~~ 514 (530)
T COG0488 507 WLVED-KVE 514 (530)
T ss_pred EEEcC-cee
Confidence 99987 443
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=3.8e-15 Score=136.71 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=68.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC----CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGEMLVGP----IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~----P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..||||||||++||++++.+ |+++||||||+|||+..+..+.+.|++++++ |.++|+++|+ .++...||+++
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~--~~~~~~~d~i~ 229 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLK--EEFFSKADALV 229 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECC--HHHHhhCCeEE
Confidence 367999999999999999864 8999999999999999999999999999754 8899998886 36778999999
Q ss_pred eecC
Q 044411 181 LMAE 184 (363)
Q Consensus 181 vL~~ 184 (363)
+|..
T Consensus 230 ~~~~ 233 (247)
T cd03275 230 GVYR 233 (247)
T ss_pred EEEe
Confidence 9864
No 387
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.57 E-value=4.8e-16 Score=130.77 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=111.1
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
|.-+|..|+..-...|.|..++.+.... .+. ...++++...++|++...+.+
T Consensus 72 rhRAYLsQqq~p~f~mpV~~YL~L~qP~---------------~~~------------a~~i~~i~~~L~l~DKL~Rs~- 123 (248)
T COG4138 72 RHRAYLSQQQTPPFAMPVWHYLTLHQPD---------------KTR------------TELLNDVAGALALDDKLGRST- 123 (248)
T ss_pred HHHHHHhhccCCcchhhhhhhhhhcCch---------------HHH------------HHHHHHHHhhhcccchhhhhh-
Confidence 4457888877766777887777653210 000 013677888899987766554
Q ss_pred CCcCCCCChHHHHHHHHHHHHhC-----CC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVG-----PI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~-----~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
..|||||.|||-+|-..++ || ++|+||||.++||......+..+|.+++. .|.+||++.|+.. ..++
T Consensus 124 ----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLN-hTLr 197 (248)
T COG4138 124 ----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLN-HTLR 197 (248)
T ss_pred ----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchh-hHHH
Confidence 4699999999999965432 33 79999999999999999999999999997 5999999987665 8899
Q ss_pred hhcceeeecCCeEEEecCCCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKVCP 197 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~~~ 197 (363)
.+|++.+|+.|++...|..++..
T Consensus 198 hA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 198 HAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999987653
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=7.1e-15 Score=127.20 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=104.1
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
++-++|..+|+.+..|-.- .++.+|--||-|+|.||.|++.+|++|+.||||+.+||.++.+|..+|.++.+..|.||
T Consensus 135 rAIeLLHrVGIKdHkDIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtI 212 (330)
T COG4170 135 RAIELLHRVGIKDHKDIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTI 212 (330)
T ss_pred HHHHHHHHhccccHHHHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceE
Confidence 4678899999998777543 46778999999999999999999999999999999999999999999999988778888
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEEEecCCCC---CCCCCChHHHHHH
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKILYHGPRKV---CPDRKAVADFVLE 208 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~~---~~~~~~~~~~~~~ 208 (363)
++++| +...+.+.||++-||.-|.-++.++.+. .|.+......+..
T Consensus 213 LL~s~-Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 213 LLISH-DLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred EEEcc-cHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHHHHHHh
Confidence 88775 4568899999999999999998888773 3444444444433
No 389
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=1.5e-14 Score=129.62 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=67.1
Q ss_pred cCCCCChHHHHHHHHHHHH----hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC-CEEEEEecCCChHHHhhhc-
Q 044411 104 IRRGISGGQKRRLTTGEML----VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD-ATILISLLQPSPETFDLFD- 177 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL----~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g-~tii~~~h~~~~~~~~~~D- 177 (363)
.+..|||||||++.++.++ +.+|+++++||||+|||+.++..+++.+++++++.| .++|+++|+.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 3457999999998877544 589999999999999999999999999999876424 57888887764 5566666
Q ss_pred -ceeeecCCe
Q 044411 178 -DIILMAEGK 186 (363)
Q Consensus 178 -~v~vL~~G~ 186 (363)
+|++|.+|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.51 E-value=2.8e-14 Score=118.73 Aligned_cols=81 Identities=32% Similarity=0.418 Sum_probs=68.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++|++|++.+++.+||.||..- .+++++++.+++.+..++.
T Consensus 57 ~~~~i~~~~~~~~~~~~~tv~~~~~~-----------------------------------~~~~~~l~~l~~~~~~~~~ 101 (137)
T PF00005_consen 57 LRRRIGYVPQDPQLFPGLTVRENESD-----------------------------------ERIEEVLKKLGLEDLLDRK 101 (137)
T ss_dssp HHHTEEEEESSHCHHTTSBHHHHHHH-----------------------------------HHHHHHHHHTTHGGGTGSB
T ss_pred cccccccccccccccccccccccccc-----------------------------------ccccccccccccccccccc
Confidence 46789999999999999999999100 1367778889988877777
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITN 136 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPts 136 (363)
++. ....|||||||||+||++|+.+|++++|||||+
T Consensus 102 ~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 102 IGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 754 336799999999999999999999999999996
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.51 E-value=7.9e-14 Score=132.99 Aligned_cols=130 Identities=18% Similarity=0.136 Sum_probs=100.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.-.++|=||.-.--...||.+.+.-......... . -..++++-|+|+...++.+
T Consensus 400 ~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s------------~--------------~~~ei~~pl~l~~i~e~~v 453 (591)
T COG1245 400 DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS------------Y--------------FKTEIVKPLNLEDLLERPV 453 (591)
T ss_pred cceEeecceeecCCCCCcHHHHHHHhhhhhcccc------------h--------------hHHhhcCccchHHHHhccc
Confidence 4568999997665677899998865432110000 0 1345567778887777776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
. +|||||.|||+||.+|..++++++||||++.||+..+..+.+.|++.....++|.+++-|+.. -+--++||++
T Consensus 454 ~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~i 527 (591)
T COG1245 454 D-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLI 527 (591)
T ss_pred c-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEE
Confidence 5 599999999999999999999999999999999999999999999999888888888766543 5555678877
Q ss_pred ee
Q 044411 181 LM 182 (363)
Q Consensus 181 vL 182 (363)
+.
T Consensus 528 vF 529 (591)
T COG1245 528 VF 529 (591)
T ss_pred EE
Confidence 66
No 392
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.49 E-value=9.5e-14 Score=121.00 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 107 GISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
-||||||||++||++++ .+|+++++|||++|||+..+..+.+.|+++++. |.++|+++|.+ +....+|+++.+
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~--~~~~~adrvi~i 170 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKK--EMFENADKLIGV 170 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCH--HHHhhCCeEEEE
Confidence 39999999999999986 699999999999999999999999999998754 78999988875 456789999998
Q ss_pred cC
Q 044411 183 AE 184 (363)
Q Consensus 183 ~~ 184 (363)
.+
T Consensus 171 ~~ 172 (178)
T cd03239 171 LF 172 (178)
T ss_pred EE
Confidence 65
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=134.06 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=83.3
Q ss_pred hHHHHHHHcCC-cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 82 KTDYNLKILGL-DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 82 ~v~~~l~~lgL-~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
++-.+|..+|. ++..++.+ .++|||+|.|+++||+|..+|++|||||||+|||+.+..-+-+.|.+... + +
T Consensus 200 k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~-~ 271 (614)
T KOG0927|consen 200 KAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--I-I 271 (614)
T ss_pred HHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--c-e
Confidence 35556666664 45566555 46999999999999999999999999999999999999999998877531 2 5
Q ss_pred EEEEecCCChHHHhhhcceeeecCCe-EEEecCCC
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGK-ILYHGPRK 194 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~-iv~~G~~~ 194 (363)
+++++ |+.+.+-.+|.+|+-|.+++ +.|.|+.+
T Consensus 272 lVi~s-h~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 272 LVIVS-HSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred EEEEe-cchhhhhhHhhhhheecccceeeecCCHH
Confidence 66655 56678889999999999999 55667755
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.2e-13 Score=131.63 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=80.9
Q ss_pred HHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 83 TDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 83 v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
++..+..+||+. .+... +.+||||||-||++|.....+|.+|+|||||+.||..+...+.+.|+.. .|. |
T Consensus 462 ~r~hl~~~Gl~g~la~~s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GG-V 532 (582)
T KOG0062|consen 462 IRRHLGSFGLSGELALQS-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGG-V 532 (582)
T ss_pred HHHHHHhcCCCchhhhcc-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCc-E
Confidence 667799999974 33332 4579999999999999999999999999999999999999999999875 243 5
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEEE
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKILY 189 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv~ 189 (363)
|+++| +.+.+..+|+.+.+..+|++.-
T Consensus 533 v~VSH-d~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 533 VLVSH-DEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEEC-cHHHHhhcCceeEEEcCCcEEe
Confidence 55554 5678999999999999999864
No 395
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.44 E-value=4.3e-13 Score=134.19 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=99.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
...+-|+||.+.+... |.+|-+.++..... .. + +.+.++|..+||.+..++.=
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~----------~~---------------d-~~l~~vL~~vgL~~L~~rl~ 507 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPD----------FS---------------D-AELVAVLHKVGLGDLAERLD 507 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCC----------CC---------------h-HHHHHHHHHcCcHHHHHHHh
Confidence 3447899998875554 99999987532110 00 0 12667788888877666543
Q ss_pred cC-CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 101 GD-AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 101 g~-~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+. +.-+.||+||||||++||.|+++|++++|||.|++||+.+...+++.+++-. .+.|||-+.|.+ .+..+.++.
T Consensus 508 ~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~ 583 (604)
T COG4178 508 EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQ 583 (604)
T ss_pred ccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhh
Confidence 32 2456799999999999999999999999999999999999999999998743 478888887765 566777776
Q ss_pred eeec
Q 044411 180 ILMA 183 (363)
Q Consensus 180 ~vL~ 183 (363)
+-+.
T Consensus 584 l~l~ 587 (604)
T COG4178 584 LELL 587 (604)
T ss_pred eeec
Confidence 6554
No 396
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=3.6e-13 Score=125.63 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=66.9
Q ss_pred CCChHHHHHHHHHHHHhC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 107 GISGGQKRRLTTGEMLVG----PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~----~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
.|||||+||+++|++++. +|+++++||||+|||+.....+.+.++++++ +.++|+++|++. +...||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 499999999999986553 9999999999999999999999999999864 679999988763 56899999999
Q ss_pred cCCe
Q 044411 183 AEGK 186 (363)
Q Consensus 183 ~~G~ 186 (363)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8764
No 397
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.41 E-value=7.5e-13 Score=113.67 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHHHHHhC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 107 GISGGQKRRLTTGEMLVG----PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~----~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
+||+||+||+++|++|.. +|+++|+|||++|+|+.....+.+.+.++.++ +.++|+++|++ +....+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEE
Confidence 599999999999999986 78999999999999999999999999988765 78899888765 456789999998
Q ss_pred cC
Q 044411 183 AE 184 (363)
Q Consensus 183 ~~ 184 (363)
..
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 54
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.40 E-value=8.6e-13 Score=126.00 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=82.9
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+.+++++.++|.+..|+-+. .|||||-||++||.+++.+++++++|||||-||...+....+.++++++. +++|
T Consensus 193 ~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~V 266 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266 (591)
T ss_pred cHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeE
Confidence 47889999999999888775 59999999999999999999999999999999999999999999999974 7899
Q ss_pred EEEecCCChHHHhhhcceeeec
Q 044411 162 LISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~ 183 (363)
|++-|+ ..-+--++|.|.++.
T Consensus 267 iVVEHD-LavLD~lsD~vhI~Y 287 (591)
T COG1245 267 IVVEHD-LAVLDYLSDFVHILY 287 (591)
T ss_pred EEEech-HHHHHHhhheeEEEe
Confidence 987654 434445678887774
No 399
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.39 E-value=7.9e-13 Score=135.01 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHhCC----CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 106 RGISGGQKRRLTTGEMLVGP----IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~----P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
+.+||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++++ +.+||++||++ .+...||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChH--HHHHhcCeEEE
Confidence 57899999999999999875 699999999999999999999999999973 68999999886 34568999999
Q ss_pred ecCCe
Q 044411 182 MAEGK 186 (363)
Q Consensus 182 L~~G~ 186 (363)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98874
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.38 E-value=1.2e-12 Score=116.27 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=71.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHH-HHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIV-TCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~-~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
..+|+|+||++.+++++ .+|+++++|||++|||+.....+. ..++.+.+ .+.++|+++|+ .++..+||++++|.+
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~ 165 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVEN 165 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEE
Confidence 45999999999999874 899999999999999999999996 46777765 47899998875 478899999999999
Q ss_pred CeEEEec
Q 044411 185 GKILYHG 191 (363)
Q Consensus 185 G~iv~~G 191 (363)
|++.+++
T Consensus 166 g~l~~~~ 172 (200)
T cd03280 166 ASMEFDP 172 (200)
T ss_pred EEEEEec
Confidence 9998763
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.37 E-value=5e-12 Score=128.18 Aligned_cols=106 Identities=21% Similarity=0.287 Sum_probs=86.2
Q ss_pred HHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 84 DYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 84 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
-+.|..+||.=.. .|. ...+|||||-|||-||..|.... .+++|||||+||-.....++++.|.++.+ .|.|
T Consensus 803 LqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnT 877 (935)
T COG0178 803 LQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNT 877 (935)
T ss_pred HHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 3446667775321 221 34569999999999999998776 89999999999999999999999999987 5889
Q ss_pred EEEEecCCChHHHhhhcceeee------cCCeEEEecCCCCC
Q 044411 161 ILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKVC 196 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~~ 196 (363)
||++-| .. ++...||.|+=| ..|+|++.|+|++.
T Consensus 878 ViVIEH-NL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 878 VIVIEH-NL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred EEEEec-cc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence 998755 44 688899999988 45799999999843
No 402
>PRK10869 recombination and repair protein; Provisional
Probab=99.35 E-value=2.3e-12 Score=130.71 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=68.3
Q ss_pred CCCChHHHHHHHHHHHHhC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 106 RGISGGQKRRLTTGEMLVG----PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~----~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+| .+..+||+.++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~--~~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLP--QVAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4589999999999999996 5899999999999999999999999999964 58899999876 45689999999
Q ss_pred ecCCe
Q 044411 182 MAEGK 186 (363)
Q Consensus 182 L~~G~ 186 (363)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
No 403
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=3.3e-12 Score=139.25 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=71.1
Q ss_pred cCCCCChHHHHHHHHHHHHhC----------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 104 IRRGISGGQKRRLTTGEMLVG----------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~~----------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.++. .|.+|+|++|.+ ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHH
Confidence 456799999999999999985 7999999999999999999999999999976 688888888765 5788
Q ss_pred hhhcceeeecCC
Q 044411 174 DLFDDIILMAEG 185 (363)
Q Consensus 174 ~~~D~v~vL~~G 185 (363)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999754
No 404
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.31 E-value=3.3e-12 Score=130.81 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHh----------CCCcEEEEeCCC-CCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 105 RRGISGGQKRRLTTGEMLV----------GPIKAMFMDKIT-NGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~----------~~P~lLlLDEPt-sGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
+..||||||||++||++|+ .+|+++|||||| ++||+.....+.+.|+++ + |.+||+++|++ ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~--~~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKD--HDP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECch--hch
Confidence 3569999999999999887 599999999998 789999999999999987 2 67899988885 456
Q ss_pred hhhcceeeecC-CeE
Q 044411 174 DLFDDIILMAE-GKI 187 (363)
Q Consensus 174 ~~~D~v~vL~~-G~i 187 (363)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 654
No 405
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.31 E-value=4e-12 Score=123.70 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=82.7
Q ss_pred hHHHHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 82 KTDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 82 ~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
.+..+|.++||... .+.+ .+.||+|||+||..|+.++.+|.+|+|||||+|||..+...+.+.|.+. .| +
T Consensus 488 ~~r~ilgrfgLtgd~q~~p-----~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~G-g 558 (614)
T KOG0927|consen 488 EMRSILGRFGLTGDAQVVP-----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PG-G 558 (614)
T ss_pred HHHHHHHHhCCCccccccc-----hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CC-c
Confidence 47788999999844 4444 4569999999999999999999999999999999999999999999875 23 5
Q ss_pred EEEEecCCChHHHhhhcceeeecCCeEE-EecC
Q 044411 161 ILISLLQPSPETFDLFDDIILMAEGKIL-YHGP 192 (363)
Q Consensus 161 ii~~~h~~~~~~~~~~D~v~vL~~G~iv-~~G~ 192 (363)
+|+++| +...+-++++++.+..+|.+. +.|+
T Consensus 559 vv~vSH-DfrlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 559 VVLVSH-DFRLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred eeeeec-hhhHHHHHHHHhHhhccCceeecCcc
Confidence 666665 455888999999999888764 3443
No 406
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.1e-12 Score=121.84 Aligned_cols=97 Identities=26% Similarity=0.268 Sum_probs=79.7
Q ss_pred HHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEE
Q 044411 86 NLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 164 (363)
Q Consensus 86 ~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~ 164 (363)
+|..+|.++- ...+ ++.||||-|-|+++||||..+|+||||||||+.||..+..-+.+.|..+ +.|+|++
T Consensus 181 ~L~glGFt~emq~~p-----t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liV 251 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQP-----TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIV 251 (582)
T ss_pred HHHhCCCCHHHHhcc-----ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEE
Confidence 7778888654 3333 4569999999999999999999999999999999999999999998865 3577777
Q ss_pred ecCCChHHHhhhcceeeecCCeE-EEecC
Q 044411 165 LLQPSPETFDLFDDIILMAEGKI-LYHGP 192 (363)
Q Consensus 165 ~h~~~~~~~~~~D~v~vL~~G~i-v~~G~ 192 (363)
+| ++..+-..|..|+-+++-++ .|.|.
T Consensus 252 SH-Dr~FLn~V~tdIIH~~~~kL~~YkGN 279 (582)
T KOG0062|consen 252 SH-DRNFLNTVCTDIIHLENLKLDYYKGN 279 (582)
T ss_pred ec-cHHHHHHHHHHHHHHhhhhhhhhcCc
Confidence 65 66688889999999987666 34454
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=9.3e-12 Score=112.29 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=77.7
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHH--hCCCcEEEEeCC---CCCCCHHhHHHHHHHHHHHhhcC
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEML--VGPIKAMFMDKI---TNGLDISTSFQIVTCLQHLAHIT 157 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL--~~~P~lLlLDEP---tsGLD~~~~~~i~~~l~~l~~~~ 157 (363)
++++++.+|+.+.. .+++|.|+++++.+++++ +.+|+++||||| |++||+.+.... .++.+.++.
T Consensus 73 ~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~ 142 (222)
T cd03285 73 VDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQI 142 (222)
T ss_pred cceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcC
Confidence 45566777776433 246999999999999999 899999999999 999999888543 334444334
Q ss_pred CCEEEEEecCCChHHHhhhcceeeecCCeEEEecC
Q 044411 158 DATILISLLQPSPETFDLFDDIILMAEGKILYHGP 192 (363)
Q Consensus 158 g~tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~ 192 (363)
|.++|++||. .++.++||++..+++|++...+.
T Consensus 143 ~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 143 KCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 7889998874 58899999999999999987664
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.3e-11 Score=113.25 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=66.2
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEE
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 162 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii 162 (363)
+...|-.+||...++|. .+..|||||+-||++|..-+..|+||||||||++||..+...+.+.|.++. | .||
T Consensus 684 ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---G-gVi 755 (807)
T KOG0066|consen 684 ARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---G-GVI 755 (807)
T ss_pred HHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---C-cEE
Confidence 55668889999888876 356799999999999999999999999999999999999999999998762 3 455
Q ss_pred EEecCC
Q 044411 163 ISLLQP 168 (363)
Q Consensus 163 ~~~h~~ 168 (363)
+++|+.
T Consensus 756 ~VsHDe 761 (807)
T KOG0066|consen 756 MVSHDE 761 (807)
T ss_pred EEeccc
Confidence 666654
No 409
>PRK03918 chromosome segregation protein; Provisional
Probab=99.19 E-value=4.4e-11 Score=128.78 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=66.4
Q ss_pred cCCCCChHHHHH------HHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 104 IRRGISGGQKRR------LTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 104 ~~~~LSGGqrqR------v~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.+..|||||+++ +++|++++.+|++++|||||+|||+..+..+.+.|..++. .+.+||++||++ ++...||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCC
Confidence 456799999995 5555678899999999999999999999999999998865 367888888875 4678999
Q ss_pred ceeeecC
Q 044411 178 DIILMAE 184 (363)
Q Consensus 178 ~v~vL~~ 184 (363)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=5.1e-11 Score=110.81 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHHHHHHh---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 106 RGISGGQKRRLTTGEMLV---------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~---------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+++++|+. +.+..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-----CEEEEeCCc-hhccchh
Confidence 448999999999999985 7999999999999999999999999987642 344555554 3566677
Q ss_pred ---cceeeecCCeE
Q 044411 177 ---DDIILMAEGKI 187 (363)
Q Consensus 177 ---D~v~vL~~G~i 187 (363)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999985
No 411
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.15 E-value=8.7e-11 Score=101.74 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=88.8
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
|-+.+++.+.++-.+. .+.+|-|||+||.|++.|+.+-++|||||.|--||..++..+++.+++-+++.|.||
T Consensus 129 Rre~LI~iLDIdl~WR-------mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatI 201 (291)
T KOG2355|consen 129 RREKLIDILDIDLRWR-------MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATI 201 (291)
T ss_pred HhhhhhhheeccceEE-------EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEE
Confidence 4566677777653322 245899999999999999999999999999999999999999999999999899999
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEEEecCCC
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
+..||- -+-+.....+++.++.|+++..-+.+
T Consensus 202 VYATHI-FDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 202 VYATHI-FDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred EEEeee-ccchhhcchhEEEecCCeeeeccccc
Confidence 999864 45788899999999999998754433
No 412
>PRK01156 chromosome segregation protein; Provisional
Probab=99.14 E-value=1.2e-10 Score=125.42 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=65.2
Q ss_pred cCCCCChHHHHHHHH------HHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcC-C-CEEEEEecCCChHHHhh
Q 044411 104 IRRGISGGQKRRLTT------GEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHIT-D-ATILISLLQPSPETFDL 175 (363)
Q Consensus 104 ~~~~LSGGqrqRv~i------a~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~-g-~tii~~~h~~~~~~~~~ 175 (363)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.++++...+.. + .++|++||++ +....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 456799999999976 489999999999999999999999999999988644332 3 4788888776 35579
Q ss_pred hcceeeec
Q 044411 176 FDDIILMA 183 (363)
Q Consensus 176 ~D~v~vL~ 183 (363)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 413
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.2e-10 Score=109.83 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=90.8
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
.++..++++.|.+...-.-|+--.-.||.|||||+++-.||+-+-+|+++||=.+.-||.-++.+.+.+-.+-++.|+||
T Consensus 423 ~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 423 LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 57888888888765333223223346999999999999999999999999999999999999999987766666789999
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEEEecCC
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKILYHGPR 193 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~ 193 (363)
+.++|++ ..+..+||++.+.+|++++.-+.
T Consensus 503 ~aIsHDd--~YF~~ADrll~~~~G~~~e~tge 532 (546)
T COG4615 503 FAISHDD--HYFIHADRLLEMRNGQLSELTGE 532 (546)
T ss_pred EEEecCc--hhhhhHHHHHHHhcCceeecccc
Confidence 9998765 57889999999999999876443
No 414
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.13 E-value=1.2e-10 Score=126.62 Aligned_cols=78 Identities=21% Similarity=0.138 Sum_probs=64.3
Q ss_pred cCCCCChHHHHHHHHHHHHhC--------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 104 IRRGISGGQKRRLTTGEMLVG--------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~~--------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.+++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++ .|++|++++|.. .....+
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHHHhc
Confidence 456799999999999999995 8999999999999999999999999999976 589999988743 233344
Q ss_pred hcceeeec
Q 044411 176 FDDIILMA 183 (363)
Q Consensus 176 ~D~v~vL~ 183 (363)
-.+|.|-.
T Consensus 1024 ~~qi~V~k 1031 (1047)
T PRK10246 1024 PVQIKVKK 1031 (1047)
T ss_pred cceEEEEE
Confidence 44555554
No 415
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=4.1e-10 Score=125.43 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCChHHHH------HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh----cCCCEEEEEecCCChHHHhh
Q 044411 106 RGISGGQKR------RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH----ITDATILISLLQPSPETFDL 175 (363)
Q Consensus 106 ~~LSGGqrq------Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~----~~g~tii~~~h~~~~~~~~~ 175 (363)
+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. ..|.+||+++|++ ..+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHH
Confidence 469999999 99999999999999999999999999999999998887632 2367888888655 477766
Q ss_pred h
Q 044411 176 F 176 (363)
Q Consensus 176 ~ 176 (363)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 5
No 416
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.03 E-value=4.1e-10 Score=124.54 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=65.2
Q ss_pred cCCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 104 IRRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.+..||||||+|++||++++ .+|+++||||||+|||+.....+.++|+.+++ +.++|+++|++. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 45679999999999999984 67899999999999999999999999999864 467888888764 45789999
Q ss_pred eeec
Q 044411 180 ILMA 183 (363)
Q Consensus 180 ~vL~ 183 (363)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7653
No 417
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.8e-09 Score=109.90 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=76.1
Q ss_pred CCCCChHHHHHHHHHHHHhCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 105 RRGISGGQKRRLTTGEMLVGP--IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~--P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
..+|||||.||+-||..+=+. -=+++||||+.||-+..-..+++.|+++.+ .|.|+|++-|+ +++...+|+|+=+
T Consensus 479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHD--edti~~AD~iIDi 555 (935)
T COG0178 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHD--EDTIRAADHIIDI 555 (935)
T ss_pred CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecC--HHHHhhcCEEEee
Confidence 346999999999999887553 248999999999999999999999999986 58899998654 4788899999987
Q ss_pred ------cCCeEEEecCCCCC
Q 044411 183 ------AEGKILYHGPRKVC 196 (363)
Q Consensus 183 ------~~G~iv~~G~~~~~ 196 (363)
+.|+|++.|++++.
T Consensus 556 GPgAG~~GGeIv~~Gtp~~i 575 (935)
T COG0178 556 GPGAGEHGGEIVAEGTPEEL 575 (935)
T ss_pred CCCCCcCCCEEEEccCHHHH
Confidence 56899999998743
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.7e-10 Score=109.89 Aligned_cols=100 Identities=23% Similarity=0.240 Sum_probs=82.9
Q ss_pred hhHHHHHHHcCCcccc-cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCC
Q 044411 81 MKTDYNLKILGLDICA-DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDA 159 (363)
Q Consensus 81 ~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ 159 (363)
.++..+|.-+|.+.-. +++ ...+|||-|-||++||||...|.+|.|||||+.||..+..-+-+.|..+. +
T Consensus 390 arARRILAGLGFskEMQ~rP-----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----K 460 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQERP-----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----K 460 (807)
T ss_pred hHHHHHHhhcCCChhHhcCC-----ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----h
Confidence 3577888888887543 333 34599999999999999999999999999999999999988889998874 4
Q ss_pred EEEEEecCCChHHHhhhcceeeecCCeEEEe
Q 044411 160 TILISLLQPSPETFDLFDDIILMAEGKILYH 190 (363)
Q Consensus 160 tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~ 190 (363)
|.++++|+. ..+-+.|..|+-|++-++-|.
T Consensus 461 TLLIVSHDQ-gFLD~VCtdIIHLD~qkLhyY 490 (807)
T KOG0066|consen 461 TLLIVSHDQ-GFLDSVCTDIIHLDNQKLHYY 490 (807)
T ss_pred eeEEEeccc-chHHHHHHHHhhhhhhhhhhh
Confidence 777777655 488899999999998887553
No 419
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=105.11 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=91.8
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc---
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT--- 98 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--- 98 (363)
+.+-|+||.|... .-|.||.+.|+........ +... -+++...|+.++|.|....
T Consensus 501 ~~lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~------~~~~---------------d~~i~r~Le~v~L~hl~~r~gg 558 (659)
T KOG0060|consen 501 KDLFFLPQRPYMT-LGTLRDQVIYPLKAEDMDS------KSAS---------------DEDILRILENVQLGHLLEREGG 558 (659)
T ss_pred CceEEecCCCCcc-ccchhheeeccCccccccc------cCCC---------------HHHHHHHHHHhhhhhHHHHhCC
Confidence 4488999987644 3499999988632211000 0000 0124444555554443222
Q ss_pred ---cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 99 ---LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 99 ---~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.+--+....||+|||||++.||.+.++|++-+|||.||++|......+.+.+++ .|.|.|-+.|.. .+...
T Consensus 559 ld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kf 632 (659)
T KOG0060|consen 559 LDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKF 632 (659)
T ss_pred CCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhh
Confidence 222234567999999999999999999999999999999999999999887765 478887666654 56667
Q ss_pred hcceeeecC
Q 044411 176 FDDIILMAE 184 (363)
Q Consensus 176 ~D~v~vL~~ 184 (363)
-|.++-|+.
T Consensus 633 Hd~~L~~~g 641 (659)
T KOG0060|consen 633 HDYVLRMDG 641 (659)
T ss_pred hhEEEEecC
Confidence 777777764
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=98.98 E-value=1.2e-09 Score=105.65 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=64.1
Q ss_pred cCCCCChHHHHHHHHHHHHh---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 104 IRRGISGGQKRRLTTGEMLV---------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~---------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
....+|+||+|++.+|+.|+ .+|+|+|||||+++||+..+..+++.+.++ +..+++|+|++. .+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~ 344 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLAD 344 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhh
Confidence 34569999999999999885 799999999999999999999999988753 346777777653 4444
Q ss_pred hh--cceeeecCCeE
Q 044411 175 LF--DDIILMAEGKI 187 (363)
Q Consensus 175 ~~--D~v~vL~~G~i 187 (363)
.+ ++++.+.+|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 54 47888999986
No 421
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=1.1e-09 Score=121.18 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=66.3
Q ss_pred cCCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 104 IRRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.+..||||||++++||.+++ .+|++++||||++|||+.....+.++|++++. +..+|++||++ .+..+||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhccee
Confidence 35679999999999999997 47899999999999999999999999999864 45678888886 466899999
Q ss_pred eeecC
Q 044411 180 ILMAE 184 (363)
Q Consensus 180 ~vL~~ 184 (363)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 87753
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.91 E-value=4.4e-09 Score=93.55 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
+.+|++++| +..+.+++.+|+++++||||+|+|+.....+.. +++.+.+ .+.++|+++|++ ++...++++..+..
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~ 165 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFH--ELADLPEQVPGVKN 165 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChH--HHHHHhhcCCCeEE
Confidence 346666665 666678889999999999999999998888765 5666654 478899888753 67778999999999
Q ss_pred CeEEEecCC
Q 044411 185 GKILYHGPR 193 (363)
Q Consensus 185 G~iv~~G~~ 193 (363)
|++...++.
T Consensus 166 ~~~~~~~~~ 174 (202)
T cd03243 166 LHMEELITT 174 (202)
T ss_pred EEEEEEecC
Confidence 998887754
No 423
>PRK02224 chromosome segregation protein; Provisional
Probab=98.91 E-value=3e-09 Score=114.61 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCCCChHHHH------HHHHHHHHhCC-----C-cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 105 RRGISGGQKR------RLTTGEMLVGP-----I-KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 105 ~~~LSGGqrq------Rv~ia~aL~~~-----P-~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
+..||||||+ |++++++++.+ | ++++|||||+|||+.....+.++|+.++..+..+||+++|++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 4679999999 88888888853 3 679999999999999999999999998753224788888776 34
Q ss_pred HhhhcceeeecC
Q 044411 173 FDLFDDIILMAE 184 (363)
Q Consensus 173 ~~~~D~v~vL~~ 184 (363)
...||+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 468999999964
No 424
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.88 E-value=1.9e-09 Score=94.59 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=62.7
Q ss_pred HHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHH-HHHHHHhhcCCCEEEEE
Q 044411 86 NLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIV-TCLQHLAHITDATILIS 164 (363)
Q Consensus 86 ~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~-~~l~~l~~~~g~tii~~ 164 (363)
++..++..+..+... +.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+.++|++
T Consensus 45 il~~~~~~d~~~~~~-----s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 45 IFTRIGASDSLAQGL-----STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred EEEEeCCCCchhccc-----cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 344556555544333 347887776433333 24599999999999999999888765 56676765337788998
Q ss_pred ecCCChHHHhhhcceeeecCCeE
Q 044411 165 LLQPSPETFDLFDDIILMAEGKI 187 (363)
Q Consensus 165 ~h~~~~~~~~~~D~v~vL~~G~i 187 (363)
||++ ++.+++|+---+.++++
T Consensus 119 TH~~--~l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 119 THYH--ELTKLADEHPGVRNLHM 139 (185)
T ss_pred ecHH--HHHHHhhcCccceEEEE
Confidence 8875 57778875433444443
No 425
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.76 E-value=5.9e-09 Score=101.59 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=88.0
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
..+-|+||.|..- .-|.+|.+.|+-... ++ ++.+ .+ +. ....+|+.+.|++.+..-.|
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e----------~~----~~kg-~~--d~----dL~~iL~~v~L~~i~qr~~g 602 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSE----------QM----KRKG-YT--DQ----DLEAILDIVHLEHILQREGG 602 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHH----------HH----HhcC-CC--HH----HHHHHHHHhhHHHHHHhccC
Confidence 4589999987654 567788776642110 00 0000 00 00 14445555555544433322
Q ss_pred C----CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 102 D----AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 102 ~----~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
= ++..-||||||||+++||.+.++|+.-+|||.||++.+.....+.+..+. .|.+.+-++|.|+ +..+-.
T Consensus 603 ~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps--lwk~h~ 676 (728)
T KOG0064|consen 603 WDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS--LWKYHT 676 (728)
T ss_pred hhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc--HHHHHH
Confidence 1 12345999999999999999999999999999999999988888876653 5888888888885 555555
Q ss_pred ceeee
Q 044411 178 DIILM 182 (363)
Q Consensus 178 ~v~vL 182 (363)
+++-.
T Consensus 677 ~ll~~ 681 (728)
T KOG0064|consen 677 HLLEF 681 (728)
T ss_pred HHHhc
Confidence 55444
No 426
>PRK14079 recF recombination protein F; Provisional
Probab=98.76 E-value=1.8e-08 Score=97.06 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHh---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 107 GISGGQKRRLTTGEMLV---------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~---------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
-+|+||||++.+|..|+ .+|++++||||+++||+..+..+.+.|.... . +++|+.+ ....+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q-~~it~t~----~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----Q-AIVAGTE----APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----c-EEEEcCC----CCCCCc
Confidence 47999999999999998 8999999999999999999999998886431 2 3444322 345899
Q ss_pred ceeeecCCeEEE
Q 044411 178 DIILMAEGKILY 189 (363)
Q Consensus 178 ~v~vL~~G~iv~ 189 (363)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988653
No 427
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.75 E-value=2.1e-08 Score=95.39 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=84.5
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEE
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 162 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii 162 (363)
..++|.+.|+.+..-.. ...+.||-|||.|+.||.++...|.+++.||=.+.||+.++..+..-|.+++++.|.|++
T Consensus 486 AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 486 AVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 56778888887532211 234679999999999999999999999999999999999999999999999988899999
Q ss_pred EEecCCChHHHhh-hcceeeecCCeEE
Q 044411 163 ISLLQPSPETFDL-FDDIILMAEGKIL 188 (363)
Q Consensus 163 ~~~h~~~~~~~~~-~D~v~vL~~G~iv 188 (363)
+++|+|. ..-.+ -|+++++.-|.+.
T Consensus 563 vvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 563 VVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EEecCHH-HHhccCCceeEEeeccccc
Confidence 9998873 44455 5888888777653
No 428
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.72 E-value=3.7e-08 Score=87.41 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHH-HHHHHHhhcCCCEEEEEecCCC
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIV-TCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~-~~l~~l~~~~g~tii~~~h~~~ 169 (363)
.+|+++++|||++|+|+.....+. .+++.+.+ .+.++|+++|++.
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~ 149 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLE 149 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHH
Confidence 589999999999999999998775 47888765 4889999888753
No 429
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=2.4e-08 Score=96.65 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHHHhC---------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 106 RGISGGQKRRLTTGEMLVG---------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~---------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
..+|.||||++.||..|+. +|+|||||||+++||+..+..+++.|.+. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 3589999999999999999 99999999999999999999999998753 568888887653
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.66 E-value=4.2e-08 Score=93.63 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=90.1
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
+.-.++|=||.-.--..-||++.+.--.+ .+...| .-+.++++-|.+++..|.-
T Consensus 400 p~lnVSykpqkispK~~~tvR~ll~~kIr-------------------~ay~~p-------qF~~dvmkpL~ie~i~dqe 453 (592)
T KOG0063|consen 400 PVLNVSYKPQKISPKREGTVRQLLHTKIR-------------------DAYMHP-------QFVNDVMKPLQIENIIDQE 453 (592)
T ss_pred cccceeccccccCccccchHHHHHHHHhH-------------------hhhcCH-------HHHHhhhhhhhHHHHHhHH
Confidence 44468888886555556678776632100 000000 1256667777777776655
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ .+|||||+|||++|.+|=..+++++.|||.+-||+..+...-..+++.--..++|-.++-|+.. -..-++|||
T Consensus 454 v-----q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrv 527 (592)
T KOG0063|consen 454 V-----QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRV 527 (592)
T ss_pred h-----hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhccee
Confidence 5 4699999999999999999999999999999999999888877777754334567776665433 233367877
Q ss_pred eee
Q 044411 180 ILM 182 (363)
Q Consensus 180 ~vL 182 (363)
++.
T Consensus 528 ivf 530 (592)
T KOG0063|consen 528 IVF 530 (592)
T ss_pred EEE
Confidence 665
No 431
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.64 E-value=1.1e-07 Score=85.53 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHH----hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 107 GISGGQKRRLTTGEML----VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL----~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
.+|||||.+++||.-| ..+.++++||||.++||...+..+.++|+++.+ +.=+|++||+ ...+..+|+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~--~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHN--PEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S---HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--ccccccccccccc
Confidence 4999999999999544 357789999999999999999999999999864 3556677765 4788899987765
No 432
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.52 E-value=2.7e-07 Score=99.67 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=66.7
Q ss_pred cCCCCChHHHHHHHHHHHH------hCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 104 IRRGISGGQKRRLTTGEML------VGP--IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL------~~~--P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.+..|||||+=.++||.+| ..+ =++|||||||..||+.....++++|..+... +..|+|+||++ ++.+.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHHh
Confidence 5678999999998887654 345 5899999999999999999999999999864 78888888764 67889
Q ss_pred hcceeeecC
Q 044411 176 FDDIILMAE 184 (363)
Q Consensus 176 ~D~v~vL~~ 184 (363)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
No 433
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.49 E-value=2e-07 Score=103.89 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCCCChHHHHHHH----HHHH--------HhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 105 RRGISGGQKRRLT----TGEM--------LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 105 ~~~LSGGqrqRv~----ia~a--------L~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
..+|||||||++. +|.+ +..+|++++|||||+|||+.....+++++.++ +.++|++++.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccc
Confidence 4689999999996 4644 55899999999999999999999999999876 5678887643
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=2.4e-07 Score=82.50 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHH-HHHHHHhhcCCCEE
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIV-TCLQHLAHITDATI 161 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~-~~l~~l~~~~g~ti 161 (363)
.+.++..++..+..+... +.+|+|++|. ..+.+++.+|++++||||++|+|+.....+. ..++.+.+ .+.++
T Consensus 72 ~d~I~~~~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~ 144 (204)
T cd03282 72 FNRLLSRLSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTV 144 (204)
T ss_pred hhheeEecCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEE
Confidence 344555556554333332 4589999865 5666688999999999999999998766654 46777765 48899
Q ss_pred EEEecCC
Q 044411 162 LISLLQP 168 (363)
Q Consensus 162 i~~~h~~ 168 (363)
|++||..
T Consensus 145 i~~TH~~ 151 (204)
T cd03282 145 FFATHFR 151 (204)
T ss_pred EEECChH
Confidence 9988754
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.46 E-value=3.4e-07 Score=87.50 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=78.1
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
..+++++.+.|++..++-+. .|||||-||.+||++.++..++.++|||.+-||...+..-...|+.+..- ..-|
T Consensus 193 ~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p-~~Yi 266 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP-DRYI 266 (592)
T ss_pred cHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCC-CCeE
Confidence 36677888888877776654 59999999999999999999999999999999999999999999999863 5667
Q ss_pred EEEecCCChHHHhhhcceeeec
Q 044411 162 LISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~ 183 (363)
|++.|+.+ -+--+.|-+.+|.
T Consensus 267 IVVEHDLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 267 IVVEHDLS-VLDYLSDFICCLY 287 (592)
T ss_pred EEEEeech-HHHhhhcceeEEe
Confidence 77766554 4444677777774
No 436
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.45 E-value=3.8e-07 Score=82.00 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred CCChHHHHHH----HHHHHH--hCCCcEEEEeCC---CCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 107 GISGGQKRRL----TTGEML--VGPIKAMFMDKI---TNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 107 ~LSGGqrqRv----~ia~aL--~~~P~lLlLDEP---tsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.+|+|+.+.. .++.++ +.+|++++|||| |+++|.... ...+++.+.+..+.++|++||.. ++.+++|
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~ 160 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEG 160 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhh
Confidence 4677766543 455554 579999999999 888887653 22344444443377888888764 7788999
Q ss_pred ceeeecCCeEEEecCCC
Q 044411 178 DIILMAEGKILYHGPRK 194 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~ 194 (363)
++..+.+|++...+..+
T Consensus 161 ~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 161 KLPRVKNFHVAVKEKGG 177 (216)
T ss_pred cCCCeEEEEEEEEeeCC
Confidence 98888888887765543
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.38 E-value=1.1e-06 Score=79.42 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 105 RRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
...+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|+..++ .+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 3457999999999988877666 89999999999999999999999998876 4678999998763
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.38 E-value=5.9e-07 Score=94.88 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHhhhcceeeec
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~ 183 (363)
.+.+|+|+++++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+ .|.++|++||++. .....+++..++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~e-l~~~~~~~~~v~- 463 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKE-LKALMYNREGVE- 463 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHH-HHHHHhcCCCeE-
Confidence 356899999999999988 8999999999999999999988865 6677765 5788999888742 333345555444
Q ss_pred CCeEEEe
Q 044411 184 EGKILYH 190 (363)
Q Consensus 184 ~G~iv~~ 190 (363)
++.+.++
T Consensus 464 ~~~~~~d 470 (782)
T PRK00409 464 NASVEFD 470 (782)
T ss_pred EEEEEEe
Confidence 5565553
No 439
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.34 E-value=1.2e-06 Score=67.41 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCCChHHH-HHHHHHHHH------hC------CCcEEEEeCCCCCCCHHhHHHHHHHHHH
Q 044411 106 RGISGGQK-RRLTTGEML------VG------PIKAMFMDKITNGLDISTSFQIVTCLQH 152 (363)
Q Consensus 106 ~~LSGGqr-qRv~ia~aL------~~------~P~lLlLDEPtsGLD~~~~~~i~~~l~~ 152 (363)
.++||||| ..+.++.++ .. .|++++||||+++||+.....+++++++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46999999 445554332 22 3799999999999999999999998874
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.34 E-value=1.2e-06 Score=76.48 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=61.5
Q ss_pred CCCChHHHH------HHHHHHHHhCCCcEEEEeCCCCCCC---HHhHHHHHHHHHHHhhcCCCEEEEEecCCCh------
Q 044411 106 RGISGGQKR------RLTTGEMLVGPIKAMFMDKITNGLD---ISTSFQIVTCLQHLAHITDATILISLLQPSP------ 170 (363)
Q Consensus 106 ~~LSGGqrq------Rv~ia~aL~~~P~lLlLDEPtsGLD---~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~------ 170 (363)
..+|+|++| ..........+|+++++|||++.+| ......+.+.++.+++ .|.|+|+++|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccC
Confidence 458999998 4444555678999999999999999 8888888888988876 48898888876542
Q ss_pred --HHHhhhcceeeec
Q 044411 171 --ETFDLFDDIILMA 183 (363)
Q Consensus 171 --~~~~~~D~v~vL~ 183 (363)
.+..+||.++.|.
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2677899998886
No 441
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.22 E-value=1.4e-06 Score=77.97 Aligned_cols=45 Identities=20% Similarity=0.037 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCC-----CCCCHHhHHHHHHHHHHHhh
Q 044411 111 GQKRRLTTGEMLVGPIKAMFMDKIT-----NGLDISTSFQIVTCLQHLAH 155 (363)
Q Consensus 111 GqrqRv~ia~aL~~~P~lLlLDEPt-----sGLD~~~~~~i~~~l~~l~~ 155 (363)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999864
No 442
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=3.1e-06 Score=75.92 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCC--hHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHH-HHHHHHHhhcC--CCEEEEEecCC
Q 044411 107 GIS--GGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI-VTCLQHLAHIT--DATILISLLQP 168 (363)
Q Consensus 107 ~LS--GGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i-~~~l~~l~~~~--g~tii~~~h~~ 168 (363)
++| .-+-||++++++++.+|+++|+|||++|+|+.....+ ...++.+.+.+ +.++|+++|.+
T Consensus 88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 456 4688999999999999999999999999999865555 56888876531 34788888765
No 443
>PRK13695 putative NTPase; Provisional
Probab=98.09 E-value=1.3e-05 Score=69.38 Aligned_cols=77 Identities=9% Similarity=0.182 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCC--CCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKI--TNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEP--tsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
.+||+++-+..+.+..+.+|+++++||| +.++|.. +.+.+.++.+ .+.++|+++|.. .+...+|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccCC
Confidence 4899999999999988999999999995 4455544 4555555553 578999988753 56678999999999
Q ss_pred CeEEEe
Q 044411 185 GKILYH 190 (363)
Q Consensus 185 G~iv~~ 190 (363)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
No 444
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.09 E-value=5.6e-06 Score=87.37 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHH-HHHHHHHhhcCCCEEEEEecCCC
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI-VTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i-~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
.+.+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+ ..+++.+.+ .|.++|++||++.
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 456999999999998876 78999999999999999999998 467777765 5888898887753
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.75 E-value=3.6e-05 Score=82.18 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=58.2
Q ss_pred HhCCCcEEEEeCCCCCC-CHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH---------hhhcceeeecCCeEEEec
Q 044411 122 LVGPIKAMFMDKITNGL-DISTSFQIVTCLQHLAHITDATILISLLQPSPETF---------DLFDDIILMAEGKILYHG 191 (363)
Q Consensus 122 L~~~P~lLlLDEPtsGL-D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~---------~~~D~v~vL~~G~iv~~G 191 (363)
+..+|+++++|||+.+| |+..+..+.+.++.+++ .|.++++++|++. ++. +.|+.+++|.+|++...|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 36899999999999999 79999999999999876 4778888888765 443 689999999999876655
Q ss_pred CC
Q 044411 192 PR 193 (363)
Q Consensus 192 ~~ 193 (363)
..
T Consensus 727 ~~ 728 (818)
T PRK13830 727 TR 728 (818)
T ss_pred hH
Confidence 43
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.70 E-value=0.0001 Score=68.34 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH-H-----------HhhhcceeeecCC
Q 044411 118 TGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE-T-----------FDLFDDIILMAEG 185 (363)
Q Consensus 118 ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~-~-----------~~~~D~v~vL~~G 185 (363)
.+.....+|+++++|||++ ...+..+++.+. .|.++|+++|.+..+ + ..+|||+++|++|
T Consensus 187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 3444457999999999974 233445555543 488999999865421 2 2668999999987
Q ss_pred eEEEecCCC
Q 044411 186 KILYHGPRK 194 (363)
Q Consensus 186 ~iv~~G~~~ 194 (363)
+ ..|+++
T Consensus 259 ~--~~g~~~ 265 (270)
T TIGR02858 259 K--GPGTVE 265 (270)
T ss_pred C--CCCcee
Confidence 6 445443
No 447
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=97.58 E-value=9.7e-05 Score=65.00 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHhhhhhh-HHHHH
Q 044411 276 EVFKACMSRELLLAKRNYFLY-LFKTIQIIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYALVILIVDGISEI-PMTLE 353 (363)
Q Consensus 276 ~q~~~l~~R~~~~~~R~~~~~-~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~-~~~~~ 353 (363)
+|++.+++|+++..+|||... ...++..++.++++|.+|.+++ +.... .++.|++++.+.+.++...... .....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG--NSQDG-FNRPGLIFGSIIFSFFSSISGSSISFER 77 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc--ccccc-cccceeeehhhHHhhhhhcccchhhhhh
Confidence 589999999999999999877 8999999999999999999655 22222 2567888888887775554444 66778
Q ss_pred hHHhHhhcc
Q 044411 354 RLAVFYKQK 362 (363)
Q Consensus 354 ~r~vf~~er 362 (363)
++..+.|++
T Consensus 78 ~~~~~~~~~ 86 (210)
T PF01061_consen 78 ERGTLERER 86 (210)
T ss_pred hcccccccc
Confidence 888888776
No 448
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.57 E-value=4.5e-05 Score=69.92 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=59.2
Q ss_pred CCCCChHH--------HHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHH-HHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 105 RRGISGGQ--------KRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQ-IVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 105 ~~~LSGGq--------rqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~-i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +..+.. .+.|.|+.+|.. .....
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~l--a~~~~ 199 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRL--AERRI 199 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHH--hhCCC
Confidence 34589999 9999999999899999999 999999655543 44 444443 355677767654 45678
Q ss_pred hcceeeecCCeE
Q 044411 176 FDDIILMAEGKI 187 (363)
Q Consensus 176 ~D~v~vL~~G~i 187 (363)
+|.|.+|+.|.+
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999986
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.52 E-value=0.00024 Score=63.83 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCh--HHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHH-HHHHhhcCCCEEEEEecCC
Q 044411 107 GISG--GQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTC-LQHLAHITDATILISLLQP 168 (363)
Q Consensus 107 ~LSG--GqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~-l~~l~~~~g~tii~~~h~~ 168 (363)
++|- .|-++++-....+.+|+++|+|||.+|+|+.....+... ++.+.+..+.++|+++|.+
T Consensus 89 ~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 89 GESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 4554 566777666667789999999999999999999988876 7777653378888888765
No 450
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.45 E-value=0.00026 Score=64.25 Aligned_cols=75 Identities=8% Similarity=0.160 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHh----CCCcEEEEeCCCCCC----CHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh------HHH
Q 044411 108 ISGGQKRRLTTGEMLV----GPIKAMFMDKITNGL----DISTSFQIVTCLQHLAHITDATILISLLQPSP------ETF 173 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGL----D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~------~~~ 173 (363)
+|+++.++-.+.+.+- .+|+++++||||+++ |+.....+.+.++.+++. |.|++++++.... .+.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEEEecccccccccceeEE
Confidence 6777665555444332 369999999999999 888888899999998764 7777776443210 023
Q ss_pred hhhcceeeec
Q 044411 174 DLFDDIILMA 183 (363)
Q Consensus 174 ~~~D~v~vL~ 183 (363)
.++|-|+.|.
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 3456666664
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.42 E-value=0.00019 Score=65.48 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHhCCCcEEEEeCCCC------CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 121 MLVGPIKAMFMDKITN------GLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 121 aL~~~P~lLlLDEPts------GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
....+|+++++| |++ .+|+.....+++.|++++++.|.+|++++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 765 47999999999999999887788998876543
No 452
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.41 E-value=0.00061 Score=61.43 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCh--HHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHH-HHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 107 GISG--GQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI-VTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 107 ~LSG--GqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i-~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++|- .|-++++-...-+.+|+++|+|||.+|.|+.....+ ..+++.+.+..+.++|++||.+ ++.++.
T Consensus 90 ~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 90 GMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 4554 577777777677889999999999999997777765 4577777654477899988765 344444
No 453
>PF13175 AAA_15: AAA ATPase domain
Probab=97.38 E-value=0.00043 Score=67.86 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=54.4
Q ss_pred cCCCCChHHHHHHHHHHHHh------CC-Cc---EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 104 IRRGISGGQKRRLTTGEMLV------GP-IK---AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~------~~-P~---lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
....+|.|.|+.+.++..+. .. +. ++++|||-+.|.|..+..+++.|.+++...+.-||+|||.|.
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 44568999999988875542 12 22 999999999999999999999999998756788999999773
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.37 E-value=0.00061 Score=58.91 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
....|-||-=---+.+.+..+ -+++||||-++|.|.-+..++..|+++++. |.-+||.||.|.
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh
Confidence 455799997766666666555 799999999999999999999999999974 777888888874
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.20 E-value=0.0014 Score=59.38 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHHhC--CCcEEEEeCCCCC---CCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh------HHHhhh
Q 044411 108 ISGGQKRRLTTGEMLVG--PIKAMFMDKITNG---LDISTSFQIVTCLQHLAHITDATILISLLQPSP------ETFDLF 176 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~--~P~lLlLDEPtsG---LD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~------~~~~~~ 176 (363)
.|.++++.+.....++. +|+++++||||+. .|......+++.++.+++ .|.|+++++|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 46788999999988886 9999999999964 445555566566766665 47888888776542 134455
Q ss_pred cceeeec
Q 044411 177 DDIILMA 183 (363)
Q Consensus 177 D~v~vL~ 183 (363)
|-++.|.
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 6665554
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.18 E-value=0.0012 Score=55.32 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCC----------CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITN----------GLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPts----------GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
.+.++.++...+.+...+|+++++|||++ +.|......+.+++... ++.+.++|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 35566677888899999999999999994 45555556666665554 44689999998876533
No 457
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.00034 Score=72.84 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=60.5
Q ss_pred CCCChHHHHHHHHHHHH----hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 106 RGISGGQKRRLTTGEML----VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL----~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
..||||||--|+||.-+ +-+++.+|+||.-++||+..+..|..+|++++.. .-.|+|| ..++++..+|+.+=
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~--aQFI~TT--FRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS--AQFITTT--FRPELLSVADKFYG 1171 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc--cceEeec--ccHHHHHHHHhhhc
Confidence 36999999999999665 3466999999999999999999999999999864 3455554 45689999998764
Q ss_pred e
Q 044411 182 M 182 (363)
Q Consensus 182 L 182 (363)
.
T Consensus 1172 V 1172 (1200)
T KOG0964|consen 1172 V 1172 (1200)
T ss_pred e
Confidence 3
No 458
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.04 E-value=0.00099 Score=71.66 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=52.9
Q ss_pred HHHHHhCCCcEEEEeCCCCCC-CHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh--hhcceeeecCCeEE
Q 044411 118 TGEMLVGPIKAMFMDKITNGL-DISTSFQIVTCLQHLAHITDATILISLLQPSPETFD--LFDDIILMAEGKIL 188 (363)
Q Consensus 118 ia~aL~~~P~lLlLDEPtsGL-D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~--~~D~v~vL~~G~iv 188 (363)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|.++++++|++. ++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788999999999999999 79999999999999876 4778888887664 5544 34444444455544
No 459
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.99 E-value=0.0023 Score=59.65 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=54.2
Q ss_pred CCCCChHHHHHHHHHHHHhC--CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 105 RRGISGGQKRRLTTGEMLVG--PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~--~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
.+.||-|+-+-+++|-+|.+ .|.+++||||-++|-|..-..+...+++.++. + -|+++||.+
T Consensus 268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~-s-Qv~VsTHS~ 331 (373)
T COG4637 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR-S-QVIVSTHSP 331 (373)
T ss_pred hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc-c-eEEEEeCCH
Confidence 35899999999999999985 68999999999999999999999999998763 3 577777754
No 460
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0028 Score=63.70 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=61.9
Q ss_pred CCCCChHHHHHHHHHH--HHhCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGE--MLVGP--IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~--aL~~~--P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.+-.||||--|+.+|. ++... .+.|++||.-+|+--.++..|-+.|+++++ +.=|+|+||.| .+..++|.=+
T Consensus 429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~--~~QVl~VTHlP--QVAa~ad~H~ 504 (557)
T COG0497 429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE--HHQVLCVTHLP--QVAAMADTHF 504 (557)
T ss_pred HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc--CceEEEEecHH--HHHhhhcceE
Confidence 4557999999999994 33333 559999999999999999999999999985 45688888876 6888888666
Q ss_pred eecC
Q 044411 181 LMAE 184 (363)
Q Consensus 181 vL~~ 184 (363)
.+.+
T Consensus 505 ~V~K 508 (557)
T COG0497 505 LVEK 508 (557)
T ss_pred EEEE
Confidence 6654
No 461
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.87 E-value=0.002 Score=67.33 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCCCChHHHHHHHHHH--HHh----CCCcEEEEeCCCCCCCHHhHHHHHH-HHHHH
Q 044411 105 RRGISGGQKRRLTTGE--MLV----GPIKAMFMDKITNGLDISTSFQIVT-CLQHL 153 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~--aL~----~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l 153 (363)
+..|||||||-++||- ||+ .+.++ ++|||++.||+..+..+++ .+..+
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~ 603 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA 603 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc
Confidence 4579999999988773 443 23456 5699999999999999885 66654
No 462
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.84 E-value=0.0021 Score=71.62 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHH----hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGEML----VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL----~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..||||||--++||.-+ +.+.++++|||--++||..+...+.++|++.++ +.=.|++||.+ ..+..+|+++
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~--~sQFIvIThr~--~~m~~ad~l~ 1139 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSK--ETQFIVITHRK--GTMEAADRLV 1139 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCc--CCeEEEEEcCh--HHHHHHHHHe
Confidence 456999999999998654 457799999999999999999999999999873 33355556765 5677788765
Q ss_pred e
Q 044411 181 L 181 (363)
Q Consensus 181 v 181 (363)
-
T Consensus 1140 G 1140 (1163)
T COG1196 1140 G 1140 (1163)
T ss_pred e
Confidence 3
No 463
>PF13166 AAA_13: AAA domain
Probab=96.13 E-value=0.021 Score=60.46 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=50.5
Q ss_pred cCCCCChHHHHHHHHH--HHHhC-------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHh--hcCCCEEEEEecC
Q 044411 104 IRRGISGGQKRRLTTG--EMLVG-------PIKAMFMDKITNGLDISTSFQIVTCLQHLA--HITDATILISLLQ 167 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia--~aL~~-------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~--~~~g~tii~~~h~ 167 (363)
....||-|||.=+++| .+.+. ...++++|.|-|.||...+..+...|+++. .. ..=|||.||.
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~-~~QviIlTHn 570 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSK-FRQVIILTHN 570 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCC-cceEEEEeCc
Confidence 4577999999999998 44455 578999999999999999999999999984 22 2345555664
No 464
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.05 E-value=0.013 Score=63.02 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=39.8
Q ss_pred HhCCCcEEEEeCCCCCCC-HHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 122 LVGPIKAMFMDKITNGLD-ISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 122 L~~~P~lLlLDEPtsGLD-~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
+-.+|+++++|||+.+|| +..+..+.+.++.+++ .|.++++++|++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHH
Confidence 456899999999999999 7889999999999876 4778888887664
No 465
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.04 E-value=0.019 Score=56.88 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=63.4
Q ss_pred CCChHHHHHHH-----HHHHHh--CCCcEEEEe-----------------CC--CCCCCHHhHHHHHHHHHHHhh-cCCC
Q 044411 107 GISGGQKRRLT-----TGEMLV--GPIKAMFMD-----------------KI--TNGLDISTSFQIVTCLQHLAH-ITDA 159 (363)
Q Consensus 107 ~LSGGqrqRv~-----ia~aL~--~~P~lLlLD-----------------EP--tsGLD~~~~~~i~~~l~~l~~-~~g~ 159 (363)
.=|-++|-+.. +|+-+. ..-=++++| || |+|+|+.....+.++++++.. ..|.
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 34678888765 333332 233467788 75 689999999999999999874 2464
Q ss_pred -----EEEEEecCCChHHHhhhcceeeecCCeEEEecCCC
Q 044411 160 -----TILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 160 -----tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
||++.+|+.. + .+||++..+.+|+++.+++..
T Consensus 303 IT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 303 ITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred eeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHH
Confidence 7888776554 3 789999999999999998765
No 466
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.88 E-value=0.015 Score=55.07 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCeEEEecCCC
Q 044411 115 RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 115 Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
.-.+..+|-.+|+++++|||.+ .++++.++.+. .++.+++.|+|..+ +....||+..|..|++...|.+.
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~ 277 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDF 277 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCH
Confidence 3356678899999999999996 34566677665 33445677777664 56679999999998887666543
No 467
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=0.0066 Score=63.84 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHHHH----hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGEML----VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL----~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
...||||||-.|+|..-| ..+++++||||.-++||......|-.+|+.-- .+.-.|+++. -+-.|.-+|++.
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--~~sQFIVVSL--KeGMF~NANvLF 1155 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--THSQFIVVSL--KEGMFNNANVLF 1155 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC--CCCeEEEEEc--hhhccccchhhh
Confidence 356999999999987433 35779999999999999999999999998743 2333444432 234555566443
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.72 E-value=0.0012 Score=66.62 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=56.4
Q ss_pred HHcCCcccccccccCCcCCCCChHHHHHHHHH--HHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEe
Q 044411 88 KILGLDICADTLVGDAIRRGISGGQKRRLTTG--EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165 (363)
Q Consensus 88 ~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia--~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~ 165 (363)
+.+++++..+... +.+|+|++|||.|+ .++...|+.. ...+..+.++++.+++ .|.|+++++
T Consensus 101 ~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLts 164 (484)
T TIGR02655 101 GGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTT 164 (484)
T ss_pred ccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 3445544444433 35899999999999 6666655433 4677888889988875 589999998
Q ss_pred cCCChH-------H-Hhhhcceeeec
Q 044411 166 LQPSPE-------T-FDLFDDIILMA 183 (363)
Q Consensus 166 h~~~~~-------~-~~~~D~v~vL~ 183 (363)
|+.... + ..+||.|+.|+
T Consensus 165 h~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 165 ERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cCcccccccccCCceeEeeeeEEEEE
Confidence 865321 2 55899999886
No 469
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.57 E-value=0.046 Score=58.98 Aligned_cols=71 Identities=18% Similarity=0.099 Sum_probs=50.8
Q ss_pred cCCCCChHHHHHHHHHHHHh--CCCcEEEEeCC---CCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 104 IRRGISGGQKRRLTTGEMLV--GPIKAMFMDKI---TNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~--~~P~lLlLDEP---tsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
...|+|-=+--...++..|- ++++++|+||| |+.+|..+ ..+.+++.+.+..+.+++++||. .++..++++
T Consensus 663 i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 663 LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 44678887777777777665 49999999999 88888544 34445666665445788888876 367777775
No 470
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=95.44 E-value=0.054 Score=53.05 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=63.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHH-----hHHHH----------HHHHHHHhhcCCCEEEEEecCCCh
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDIS-----TSFQI----------VTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~-----~~~~i----------~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
..=||-.-|=.+|.+||=...++||+||=||+-.-- .+..+ .+.++++.++.|.+.|+++ --+.
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~-Ggsg 399 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVV-GGSG 399 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEe-ccch
Confidence 346999999999999999999999999999975433 33333 5566777667788777766 5566
Q ss_pred HHHhhhcceeeecCCe
Q 044411 171 ETFDLFDDIILMAEGK 186 (363)
Q Consensus 171 ~~~~~~D~v~vL~~G~ 186 (363)
..+..+|+|++|++=+
T Consensus 400 dy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYR 415 (448)
T ss_pred hhHhhCCEEEEecCcc
Confidence 8899999999998754
No 471
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.97 E-value=0.013 Score=51.20 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh-HHHhhhcceeeecCC
Q 044411 110 GGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP-ETFDLFDDIILMAEG 185 (363)
Q Consensus 110 GGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~-~~~~~~D~v~vL~~G 185 (363)
.|+-.|..||..+..+|+.+..+| +.+||.....+.+.+.+... .|.+|++.+|...+ .....||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 488999999999999999888777 89999999999999988754 35688877765431 356789998887554
No 472
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.90 E-value=0.065 Score=57.55 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=40.7
Q ss_pred HHhCCCcEEEEeCCCCCCC-HHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 121 MLVGPIKAMFMDKITNGLD-ISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 121 aL~~~P~lLlLDEPtsGLD-~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
.+..+|.++++|||..+|| +..+..+.+.++.+++ .|.++++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 4567999999999999999 8889999999999876 4778888887664
No 473
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.88 E-value=0.022 Score=61.02 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=58.8
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..||||||-.-+||..++ .+.+++++||.-++||-.+.--|.+.|++-.+. -.=|||+. ....|++++|++
T Consensus 1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkN-AQFIIISL---RnnMFELa~rLv 1268 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKN-AQFIIISL---RNNMFELANRLV 1268 (1293)
T ss_pred cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccC-CeEEEEEe---hhhHHHHHhhhe
Confidence 5569999999999997665 356999999999999999999999999986542 22344443 346789999987
Q ss_pred eec
Q 044411 181 LMA 183 (363)
Q Consensus 181 vL~ 183 (363)
=+.
T Consensus 1269 GIY 1271 (1293)
T KOG0996|consen 1269 GIY 1271 (1293)
T ss_pred eeE
Confidence 654
No 474
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.056 Score=51.95 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHHHH---------hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 107 GISGGQKRRLTTGEML---------VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL---------~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
-.|-||+|-+.+|.-| ...++||||||-+|-||..-+..+++. .+ .+.=++||+.+. +.+....+
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~----~~~Q~fvT~t~~-~~~~~~~~ 348 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE----LGVQVFVTTTDL-EDIDDNLD 348 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc----cCCeEEEEccCH-HHhhhhhh
Confidence 3799999999988544 457899999999999999999999887 32 233455554332 34443333
Q ss_pred ---ceeeecCCeE
Q 044411 178 ---DIILMAEGKI 187 (363)
Q Consensus 178 ---~v~vL~~G~i 187 (363)
++....+|++
T Consensus 349 ~~~~~f~V~~g~i 361 (363)
T COG1195 349 ENAQMFHVEDGKI 361 (363)
T ss_pred ccceEEEEeccee
Confidence 6666777765
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.70 E-value=0.043 Score=54.23 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=60.3
Q ss_pred CCCCChHHHHHHHHHHHHh-------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 105 RRGISGGQKRRLTTGEMLV-------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~-------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
..+-|.|+|+|+..+.+.+ .++-++++|+||++.|+. .+|...+.+.-. .|.+..+.+|+ .++++
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l-----~~L~E 290 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYM-----KKLLE 290 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccc-----hhHHH
Confidence 3567999999999987766 889999999999999996 666666666654 37777776653 23455
Q ss_pred ceeeecCCeEEEecCC
Q 044411 178 DIILMAEGKILYHGPR 193 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~ 193 (363)
|.-...+|.+...+..
T Consensus 291 Rag~~~~GSiT~~~tv 306 (432)
T PRK06793 291 RSGKTQKGSITGIYTV 306 (432)
T ss_pred HhccCCCcceEEEEEE
Confidence 5555678988776654
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.68 E-value=0.082 Score=46.69 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=41.5
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeec
Q 044411 117 TTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~ 183 (363)
+++++|..+|+++++|||. |..+...+.+ .+. .|..++.|+|.++ +....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5778999999999999996 5554433332 343 4788888888765 446789987774
No 477
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.67 E-value=0.1 Score=57.17 Aligned_cols=45 Identities=27% Similarity=0.294 Sum_probs=38.1
Q ss_pred CChHHHH------HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHH
Q 044411 108 ISGGQKR------RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 152 (363)
Q Consensus 108 LSGGqrq------Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~ 152 (363)
-|-|||= |+++|..+..+-.+|=|||||+.||-.....+...+.+
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~ 1234 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSR 1234 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHH
Confidence 5889986 77788999999999999999999999988777665544
No 478
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.46 E-value=0.16 Score=50.68 Aligned_cols=70 Identities=10% Similarity=0.205 Sum_probs=51.9
Q ss_pred CCCcEEEEeCCCCCCCHH-hHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee-eecCCeEEEecCCC
Q 044411 124 GPIKAMFMDKITNGLDIS-TSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII-LMAEGKILYHGPRK 194 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~-~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~-vL~~G~iv~~G~~~ 194 (363)
.+|++|++|||...+|.. +...+.+++..+.. .|+.+|++++++..++..+.+++. -+..|-++...+|+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence 479999999999988765 45678888888765 466777777666566666767765 46778777777766
No 479
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.93 E-value=0.27 Score=41.86 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=53.0
Q ss_pred HHHHHHHHh--CCCcEEEEeCCCCC--CCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 115 RLTTGEMLV--GPIKAMFMDKITNG--LDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 115 Rv~ia~aL~--~~P~lLlLDEPtsG--LD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
-...|+..+ .+.++++|||-... ++......+.++|++-. .+..+|+|-+.+.+++.+++|-|--|..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp--~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP--EDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC--CCCEEEEECCCCCHHHHHhCceeeecce
Confidence 344454444 46799999999865 56667888999888643 4679999999999999999999988764
No 480
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.84 E-value=0.13 Score=49.11 Aligned_cols=42 Identities=5% Similarity=0.199 Sum_probs=34.5
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 129 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 129 LlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
+++|||+.+||+.++..+++.|++.. .+.++|+++|++. .+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~-~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAAD-KVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChH-hCh
Confidence 45789999999999999999999875 3678888888765 444
No 481
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.60 E-value=0.16 Score=54.27 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
...||||||--.+||..++ ++++..+|||.-++||-.+...|...|+ ..+-.+||+|. -++.+..+|-++
T Consensus 1049 m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvISL---K~~~y~kadaLV 1122 (1141)
T KOG0018|consen 1049 MDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVISL---KEEFYQKADALV 1122 (1141)
T ss_pred hhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEec---cHHHhhhhhcee
Confidence 4679999999999997765 3568999999999999999999999998 22223555542 347788887666
Q ss_pred eec
Q 044411 181 LMA 183 (363)
Q Consensus 181 vL~ 183 (363)
=+.
T Consensus 1123 Gvy 1125 (1141)
T KOG0018|consen 1123 GVY 1125 (1141)
T ss_pred eec
Confidence 443
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.26 E-value=0.26 Score=47.46 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeec
Q 044411 117 TTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~ 183 (363)
+++.+|..+|+++++||+. |+.+....++ .+. .|..++.|+|..+ +....+|++-|-
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~-tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAE-TGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHH-cCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 4677899999999999997 8887765544 233 5788888887654 446778887663
No 483
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=91.41 E-value=0.99 Score=41.01 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=46.5
Q ss_pred CCCCCh--HHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 105 RRGISG--GQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 105 ~~~LSG--GqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
..++|. .|-++++-...-+.+..++|+||+..|=++.....+.. .++.+.+..+..++++||.+ ++.++.+
T Consensus 100 ~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~~ 173 (235)
T PF00488_consen 100 ESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELLE 173 (235)
T ss_dssp TTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHHH
T ss_pred ccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHhh
Confidence 345676 55566555544467889999999999999999888765 56666653467788888765 3444443
No 484
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.23 E-value=2.8 Score=33.08 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHH-----HHHHHhhcCCCEEEEEec
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVT-----CLQHLAHITDATILISLL 166 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-----~l~~l~~~~g~tii~~~h 166 (363)
...+++..+..+.++-..+|.++++||+..-.+......... .........+..+|++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 468888888888888888899999999999999988877654 122222334667777776
No 485
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=0.91 Score=45.59 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=52.8
Q ss_pred CCChHHHHHHHHHHHH---hCCC-----cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 107 GISGGQKRRLTTGEML---VGPI-----KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL---~~~P-----~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.||-|++.=++++--| --+| +++++|.|.+.+|+......+..++..+. .++-+++-+|. ...+.++++
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t-~~kQviVLtHn-tYF~rd~~~ 605 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT-NIKQVIVLTHN-TYFYRDITL 605 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh-CceEEEEEecc-ceehHHHHh
Confidence 5999999999886433 3344 58999999999999999999999999886 46667766665 334444444
No 486
>PF13514 AAA_27: AAA domain
Probab=90.18 E-value=0.8 Score=51.15 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCCCChHHHHHHHH------HHHH-hCCCcE-EEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 105 RRGISGGQKRRLTT------GEML-VGPIKA-MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 105 ~~~LSGGqrqRv~i------a~aL-~~~P~l-LlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
+.+||+|-+=-+.| +..+ -..+++ +|+|+++...|..-...++++|.++++. +-.|++ |||+ .+.+++
T Consensus 1023 ~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~-~QVI~F-Tch~--~l~~~a 1098 (1111)
T PF13514_consen 1023 VEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR-RQVIYF-TCHE--HLVELA 1098 (1111)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC-CeEEEE-eccH--HHHHHH
Confidence 45699999965544 4455 344555 8999999999999999999999999864 445555 5554 455555
Q ss_pred cce
Q 044411 177 DDI 179 (363)
Q Consensus 177 D~v 179 (363)
..+
T Consensus 1099 ~~~ 1101 (1111)
T PF13514_consen 1099 REV 1101 (1111)
T ss_pred HHh
Confidence 544
No 487
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.06 E-value=0.73 Score=39.90 Aligned_cols=69 Identities=9% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHh--CCCcEEEEeCCCCCCC--HHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 116 LTTGEMLV--GPIKAMFMDKITNGLD--ISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 116 v~ia~aL~--~~P~lLlLDEPtsGLD--~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
+..|+..+ .+.++++|||-...++ .....+++++|+.- -.+..+|+|=+.+.+++.+++|.|--|..++
T Consensus 104 ~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~r--p~~~evILTGR~~p~~Lie~AD~VTEm~~~~ 176 (178)
T PRK07414 104 WQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKR--PSHVDVILTGPEMPESLLAIADQITELRRSH 176 (178)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhCCeeeeeeccc
Confidence 45555555 4579999999987554 45677888888863 3477899999999999999999999887653
No 488
>PRK04296 thymidine kinase; Provisional
Probab=88.90 E-value=1 Score=39.46 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC---------CChHHHhhhcceeeecCCeEEEecC
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ---------PSPETFDLFDDIILMAEGKILYHGP 192 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~---------~~~~~~~~~D~v~vL~~G~iv~~G~ 192 (363)
.+++++++||- --||. .++.++++.++. .|.+|+++-+. ....+..++|.|..|.. .+...|.
T Consensus 77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~-vC~~Cg~ 148 (190)
T PRK04296 77 EKIDCVLIDEA-QFLDK---EQVVQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA-ICVHCGR 148 (190)
T ss_pred CCCCEEEEEcc-ccCCH---HHHHHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE-EccccCC
Confidence 47899999999 22443 336666666554 58999998877 66788999999998854 3333443
No 489
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=88.50 E-value=1.8 Score=42.31 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhH-------------HHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTS-------------FQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~-------------~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
-||-+.+-..|=+++=...++||.||-+|+...-.. ..+.+.+.++.. .+.++|+++.- .+....
T Consensus 321 ASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~g-d~iS~iaVtgg-lddlla 398 (554)
T COG3044 321 ASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRG-DLISTIAVTGG-LDDLLA 398 (554)
T ss_pred CCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhcc-CceEEEEEecc-chhhhh
Confidence 699999999999999999999999999987654322 233444444432 23677666544 457888
Q ss_pred hhcceeeecCCeEE
Q 044411 175 LFDDIILMAEGKIL 188 (363)
Q Consensus 175 ~~D~v~vL~~G~iv 188 (363)
.+||+++|++-+-.
T Consensus 399 ~aDRaIvMeDhrpk 412 (554)
T COG3044 399 VADRAIVMEDHRPK 412 (554)
T ss_pred hcceEEEecccCcc
Confidence 99999999986643
No 490
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.46 E-value=1 Score=41.49 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHHHHHHh--CCCcEEEEeCCCCCCCH-------H-hHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 114 RRLTTGEMLV--GPIKAMFMDKITNGLDI-------S-TSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 114 qRv~ia~aL~--~~P~lLlLDEPtsGLD~-------~-~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
.-+..++.++ .+|+++++|..+.-.+. . ....++..|+.++++.+.||++++|-
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 3445555444 47999999998764332 1 24567778888988889999988753
No 491
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.18 E-value=1 Score=40.37 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCcEEEEeCCC-----CCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC--------hHHHhhhcceeeec
Q 044411 124 GPIKAMFMDKIT-----NGLDISTSFQIVTCLQHLAHITDATILISLLQPS--------PETFDLFDDIILMA 183 (363)
Q Consensus 124 ~~P~lLlLDEPt-----sGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~--------~~~~~~~D~v~vL~ 183 (363)
.+++++++|-.+ .+.|...+..+.++++.+++ .|.|+++++|... ..+..+||.|++|.
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999432 34455567778888888865 5889999887531 22567899999984
No 492
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.96 E-value=0.5 Score=53.79 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=42.7
Q ss_pred CCCCChHHHHHHHHHHHHh--------C--------CC-cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEe
Q 044411 105 RRGISGGQKRRLTTGEMLV--------G--------PI-KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~--------~--------~P-~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~ 165 (363)
.++||||||..+.+...++ . -| ++|+|||. +++|..+...++++++.+ |.=.|+++
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~----~~q~i~~t 1435 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL----DMQLLIAA 1435 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc----CCcEEEec
Confidence 4679999998888775554 2 23 55799999 999999999999988743 45566654
No 493
>PRK13764 ATPase; Provisional
Probab=86.73 E-value=2.1 Score=44.23 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=46.7
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC--------------CChHHHhhhcceeeecCC
Q 044411 120 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ--------------PSPETFDLFDDIILMAEG 185 (363)
Q Consensus 120 ~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~--------------~~~~~~~~~D~v~vL~~G 185 (363)
.+|..+|+++++||.-..-| ++.+..++. .|..++.|+|- ....+...+|+++.+++|
T Consensus 319 ~lLR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G 390 (602)
T PRK13764 319 ILLLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDG 390 (602)
T ss_pred HHHhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCC
Confidence 34788999999999974332 333333433 35567777772 334666789999999999
Q ss_pred eE--EEecCCC
Q 044411 186 KI--LYHGPRK 194 (363)
Q Consensus 186 ~i--v~~G~~~ 194 (363)
++ ++++...
T Consensus 391 ~I~~v~~~~~~ 401 (602)
T PRK13764 391 EVSKVYDLEFT 401 (602)
T ss_pred EEEEEEeeeeE
Confidence 99 7777644
No 494
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.65 E-value=1.3 Score=38.86 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=53.3
Q ss_pred HHHHHHHHh--CCCcEEEEeCCCCCCC--HHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 115 RLTTGEMLV--GPIKAMFMDKITNGLD--ISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 115 Rv~ia~aL~--~~P~lLlLDEPtsGLD--~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
-+..|+..+ .+.++++|||-...++ .....+|+++|+.- -.+..+|+|=+.+.+++.+++|.|.-|..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r--p~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR--PGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC--CCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 355566655 4569999999987655 45678899988753 34678999999999999999999998865
No 495
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=86.56 E-value=2.2 Score=46.18 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=44.0
Q ss_pred cCCCCChHHHHHHHHH--HHHhCCCcEEEEeCCCCCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 104 IRRGISGGQKRRLTTG--EMLVGPIKAMFMDKITNGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia--~aL~~~P~lLlLDEPtsGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
...++|-=+--...++ ..-+++++++++||+-.|-|+.....|.. ++..+.+..+..++++||.+ ++..+++
T Consensus 648 i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~--eL~~l~~ 722 (840)
T TIGR01070 648 LASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF--ELTALEE 722 (840)
T ss_pred hhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch--HHHHHhh
Confidence 3455666444444444 44467899999999977666666555443 33444442467788888765 4555554
No 496
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.79 E-value=1.2 Score=40.04 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCC--CHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh-------HHHhhhcceeeec
Q 044411 125 PIKAMFMDKITNGL--DISTSFQIVTCLQHLAHITDATILISLLQPSP-------ETFDLFDDIILMA 183 (363)
Q Consensus 125 ~P~lLlLDEPtsGL--D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~-------~~~~~~D~v~vL~ 183 (363)
+|+++++|.|+.-+ ++.....+...+...+++.|.|+++++|.... .+..+||-|+.|.
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 56778888876532 44444455555555555679999999874321 2445788888876
No 497
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.54 E-value=2.6 Score=43.77 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHH---HHHH----h----CCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 106 RGISGGQKRRLTT---GEML----V----GPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 106 ~~LSGGqrqRv~i---a~aL----~----~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.|+|||||++++- |-+| + +.| .-+||||.++-=|+..+..++..++++ |.-.+++ .|..++
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f----glh~v~i--TPlk~I 1062 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF----GLHAVFI--TPLKEI 1062 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc----CceEEEe--chHHHH
Confidence 6799999999864 3333 2 123 368999999999999999999999875 4444444 355444
Q ss_pred Hhh
Q 044411 173 FDL 175 (363)
Q Consensus 173 ~~~ 175 (363)
--+
T Consensus 1063 ~~l 1065 (1104)
T COG4913 1063 RLL 1065 (1104)
T ss_pred HHH
Confidence 433
No 498
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.98 E-value=3.8 Score=32.67 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh----cCCCEEEEEecCC
Q 044411 114 RRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH----ITDATILISLLQP 168 (363)
Q Consensus 114 qRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~----~~g~tii~~~h~~ 168 (363)
+..........++.++++||.-.. ++.....+.+.+..... ..+..+|++++.+
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 344555667788999999998765 56667778888877643 2466777776543
No 499
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.93 E-value=1.5 Score=43.90 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCCcEEEEeCCCCCC----C-----HHhHHHHHHHHHHHhhcCCCEEEEEecCCCh-------HHHhhhcceeeecCCe
Q 044411 124 GPIKAMFMDKITNGL----D-----ISTSFQIVTCLQHLAHITDATILISLLQPSP-------ETFDLFDDIILMAEGK 186 (363)
Q Consensus 124 ~~P~lLlLDEPtsGL----D-----~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~-------~~~~~~D~v~vL~~G~ 186 (363)
.+|+++++|.-++=. + ....++++..|.+++++.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 489999999876521 1 2335566677888888889999998775432 2567899999997654
No 500
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.53 E-value=2.5 Score=36.52 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=52.6
Q ss_pred HHHHHHHHHh--CCCcEEEEeCCCCCCC--HHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 114 RRLTTGEMLV--GPIKAMFMDKITNGLD--ISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 114 qRv~ia~aL~--~~P~lLlLDEPtsGLD--~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
+-+..|+..+ .+.++++|||-+..++ ..+..+++++|+.- -.+.-+|+|=+.+.+++.+++|.|--|..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r--p~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER--PGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 3445555555 4679999999986443 44667888888753 34678999999999999999999998865
Done!