Query 044411
Match_columns 363
No_of_seqs 415 out of 3153
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 6.7E-32 2.3E-36 257.3 16.1 149 19-195 77-225 (359)
2 3tui_C Methionine import ATP-b 100.0 8.7E-32 3E-36 256.7 15.7 147 21-195 104-250 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 9.5E-32 3.3E-36 258.0 15.4 156 12-195 65-220 (381)
4 3d31_A Sulfate/molybdate ABC t 100.0 2.8E-31 9.7E-36 252.8 15.1 146 19-195 69-214 (348)
5 1z47_A CYSA, putative ABC-tran 100.0 4.2E-31 1.4E-35 251.9 16.3 155 13-195 78-232 (355)
6 2yyz_A Sugar ABC transporter, 100.0 4.9E-31 1.7E-35 252.0 15.7 156 12-195 65-220 (359)
7 2it1_A 362AA long hypothetical 100.0 5.6E-31 1.9E-35 251.8 15.3 155 13-195 66-220 (362)
8 1oxx_K GLCV, glucose, ABC tran 100.0 6E-31 2E-35 251.3 15.1 148 20-195 80-227 (353)
9 1g29_1 MALK, maltose transport 100.0 9.2E-31 3.1E-35 251.5 15.9 148 20-195 79-226 (372)
10 2onk_A Molybdate/tungstate ABC 100.0 3.6E-31 1.2E-35 240.3 11.4 145 20-194 68-212 (240)
11 3tif_A Uncharacterized ABC tra 100.0 1.8E-30 6E-35 235.3 15.8 148 22-195 83-231 (235)
12 1v43_A Sugar-binding transport 100.0 8.2E-31 2.8E-35 251.6 13.9 155 13-195 74-228 (372)
13 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-30 8.2E-35 239.3 15.6 147 21-195 83-230 (275)
14 2pcj_A ABC transporter, lipopr 100.0 3.7E-30 1.2E-34 231.6 15.8 142 22-193 82-223 (224)
15 2olj_A Amino acid ABC transpor 100.0 4.1E-30 1.4E-34 236.3 15.4 145 21-194 99-244 (263)
16 1b0u_A Histidine permease; ABC 100.0 5E-30 1.7E-34 235.9 14.9 145 21-194 92-238 (262)
17 4g1u_C Hemin import ATP-bindin 100.0 4.4E-30 1.5E-34 236.7 13.9 146 21-196 84-235 (266)
18 1g6h_A High-affinity branched- 100.0 6.7E-30 2.3E-34 234.5 14.9 154 21-194 81-238 (257)
19 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-29 3.9E-34 232.6 14.6 145 21-194 87-231 (256)
20 1ji0_A ABC transporter; ATP bi 100.0 2.9E-29 9.8E-34 228.0 14.3 143 22-194 81-224 (240)
21 2nq2_C Hypothetical ABC transp 100.0 7.5E-29 2.6E-33 226.9 15.7 151 20-195 64-214 (253)
22 2yz2_A Putative ABC transporte 100.0 1.4E-28 4.7E-33 226.8 15.1 145 20-194 76-223 (266)
23 2qi9_C Vitamin B12 import ATP- 100.0 1E-28 3.5E-33 225.3 11.5 141 21-195 72-219 (249)
24 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-28 7.7E-33 226.7 10.6 150 21-195 96-249 (279)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 4.6E-28 1.6E-32 221.4 11.9 146 22-194 80-229 (250)
26 2ixe_A Antigen peptide transpo 99.9 1.5E-27 5.3E-32 220.3 12.6 148 21-194 92-241 (271)
27 2zu0_C Probable ATP-dependent 99.9 4.2E-27 1.4E-31 217.0 15.2 148 22-194 97-250 (267)
28 3nh6_A ATP-binding cassette SU 99.9 2.3E-27 8E-32 222.1 13.0 141 20-194 126-273 (306)
29 2pjz_A Hypothetical protein ST 99.9 3.1E-27 1E-31 217.1 12.8 136 21-194 73-211 (263)
30 2ff7_A Alpha-hemolysin translo 99.9 5.8E-27 2E-31 213.7 13.6 141 21-194 82-228 (247)
31 1sgw_A Putative ABC transporte 99.9 1.3E-26 4.3E-31 206.7 11.9 135 20-187 76-210 (214)
32 1mv5_A LMRA, multidrug resista 99.9 2.9E-27 9.8E-32 215.3 7.5 142 20-193 74-221 (243)
33 2ghi_A Transport protein; mult 99.9 2.5E-26 8.5E-31 211.0 13.0 140 21-194 92-238 (260)
34 3gd7_A Fusion complex of cysti 99.9 7.5E-27 2.6E-31 225.4 9.3 141 21-195 93-239 (390)
35 2pze_A Cystic fibrosis transme 99.9 8.9E-26 3E-30 203.6 10.9 138 22-194 69-214 (229)
36 2yl4_A ATP-binding cassette SU 99.9 3.8E-25 1.3E-29 225.9 15.9 145 21-196 417-568 (595)
37 2cbz_A Multidrug resistance-as 99.9 2.8E-25 9.7E-30 201.3 10.9 143 23-194 67-213 (237)
38 3b5x_A Lipid A export ATP-bind 99.9 4.1E-25 1.4E-29 225.1 13.1 143 20-195 415-564 (582)
39 3b60_A Lipid A export ATP-bind 99.9 3.4E-25 1.2E-29 225.6 12.3 141 21-194 416-563 (582)
40 3qf4_A ABC transporter, ATP-bi 99.9 4.3E-25 1.5E-29 224.9 13.0 148 21-195 416-563 (587)
41 4a82_A Cystic fibrosis transme 99.9 4.4E-25 1.5E-29 224.6 12.5 141 21-195 414-561 (578)
42 3qf4_B Uncharacterized ABC tra 99.9 1.5E-24 5.1E-29 221.4 12.2 141 21-195 428-575 (598)
43 3bk7_A ABC transporter ATP-bin 99.9 3.3E-24 1.1E-28 218.3 14.1 148 16-195 411-560 (607)
44 3j16_B RLI1P; ribosome recycli 99.9 3.3E-24 1.1E-28 218.0 13.4 145 20-196 411-557 (608)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 3.1E-24 1.1E-28 216.1 12.7 144 20-195 345-490 (538)
46 2bbs_A Cystic fibrosis transme 99.9 3.5E-24 1.2E-28 199.4 11.3 137 22-194 99-243 (290)
47 3ozx_A RNAse L inhibitor; ATP 99.9 2.3E-23 7.8E-28 209.4 14.0 142 21-193 329-472 (538)
48 4f4c_A Multidrug resistance pr 99.9 6.6E-24 2.3E-28 233.4 10.1 144 20-195 1151-1301(1321)
49 4f4c_A Multidrug resistance pr 99.9 4.6E-23 1.6E-27 226.7 13.5 143 20-196 490-639 (1321)
50 3g5u_A MCG1178, multidrug resi 99.9 1E-22 3.5E-27 223.5 11.4 144 20-195 1105-1255(1284)
51 3g5u_A MCG1178, multidrug resi 99.9 2.3E-22 8E-27 220.6 12.4 148 21-195 463-610 (1284)
52 3ux8_A Excinuclease ABC, A sub 99.9 2.6E-22 8.8E-27 207.7 9.5 103 85-195 184-295 (670)
53 3bk7_A ABC transporter ATP-bin 99.9 2.4E-21 8.3E-26 197.2 13.8 98 82-186 208-305 (607)
54 3ux8_A Excinuclease ABC, A sub 99.9 1.4E-21 4.9E-26 202.1 11.5 105 83-195 523-637 (670)
55 1yqt_A RNAse L inhibitor; ATP- 99.8 3.7E-21 1.3E-25 193.7 13.2 98 82-186 138-235 (538)
56 2iw3_A Elongation factor 3A; a 99.8 5.9E-21 2E-25 201.4 13.7 132 23-193 496-630 (986)
57 3pih_A Uvrabc system protein A 99.8 2.4E-20 8.3E-25 196.4 14.0 107 82-196 784-900 (916)
58 3ozx_A RNAse L inhibitor; ATP 99.8 2.2E-20 7.4E-25 187.8 10.9 98 82-187 118-215 (538)
59 3j16_B RLI1P; ribosome recycli 99.8 5.7E-20 2E-24 186.8 10.2 101 82-189 201-301 (608)
60 2r6f_A Excinuclease ABC subuni 99.8 2.2E-19 7.5E-24 188.2 13.1 105 83-195 825-939 (972)
61 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.3E-19 7.8E-24 150.4 9.8 80 104-186 54-141 (148)
62 2r6f_A Excinuclease ABC subuni 99.8 6.7E-19 2.3E-23 184.6 15.0 105 85-197 486-599 (972)
63 3pih_A Uvrabc system protein A 99.8 3.2E-19 1.1E-23 187.8 12.2 105 83-195 444-557 (916)
64 2vf7_A UVRA2, excinuclease ABC 99.8 3.3E-19 1.1E-23 186.3 11.9 106 82-195 709-824 (842)
65 2ygr_A Uvrabc system protein A 99.8 5E-19 1.7E-23 186.1 13.0 105 83-195 843-957 (993)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 7E-19 2.4E-23 169.1 9.5 83 104-189 276-364 (365)
67 2ygr_A Uvrabc system protein A 99.8 1.3E-18 4.6E-23 182.9 11.0 102 85-194 503-613 (993)
68 2iw3_A Elongation factor 3A; a 99.8 5.4E-19 1.8E-23 186.5 7.0 101 82-192 879-981 (986)
69 2vf7_A UVRA2, excinuclease ABC 99.7 1.6E-17 5.4E-22 173.6 11.5 105 83-196 360-473 (842)
70 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.4E-18 4.9E-23 171.3 -3.0 137 20-194 177-334 (460)
71 4aby_A DNA repair protein RECN 99.7 1.3E-16 4.3E-21 155.7 10.1 80 108-191 296-381 (415)
72 3kta_B Chromosome segregation 99.6 3.4E-16 1.2E-20 134.4 9.6 78 105-186 62-145 (173)
73 2o5v_A DNA replication and rep 99.6 8.7E-16 3E-20 146.7 8.1 86 102-196 259-354 (359)
74 1e69_A Chromosome segregation 99.6 2.3E-15 8E-20 142.1 11.0 79 105-187 217-301 (322)
75 4ad8_A DNA repair protein RECN 99.6 8E-16 2.7E-20 154.4 8.1 79 104-186 393-474 (517)
76 3qkt_A DNA double-strand break 99.6 1.4E-15 4.9E-20 144.6 9.4 80 104-186 245-332 (339)
77 1ye8_A Protein THEP1, hypothet 99.5 1.2E-14 4.3E-19 125.4 7.4 77 105-189 74-159 (178)
78 3auy_A DNA double-strand break 99.5 7.4E-14 2.5E-18 134.4 9.8 76 104-183 277-359 (371)
79 1w1w_A Structural maintenance 99.4 2.8E-13 9.7E-18 132.8 9.7 75 106-183 332-410 (430)
80 4gp7_A Metallophosphoesterase; 99.4 4.8E-14 1.7E-18 120.8 1.1 60 108-168 84-159 (171)
81 3b85_A Phosphate starvation-in 99.3 6.3E-14 2.1E-18 124.0 -0.4 52 111-169 108-159 (208)
82 1tq4_A IIGP1, interferon-induc 99.3 7.8E-14 2.7E-18 135.3 -3.7 123 25-186 111-255 (413)
83 1tf7_A KAIC; homohexamer, hexa 99.2 8.2E-12 2.8E-16 125.4 5.2 80 105-186 351-444 (525)
84 3thx_A DNA mismatch repair pro 99.1 9.2E-11 3.1E-15 124.2 9.0 88 105-194 719-809 (934)
85 3b9q_A Chloroplast SRP recepto 99.1 5.1E-12 1.8E-16 118.0 -0.8 120 22-187 154-284 (302)
86 3sop_A Neuronal-specific septi 99.1 2E-12 7E-17 118.8 -6.0 104 21-167 46-149 (270)
87 1znw_A Guanylate kinase, GMP k 99.0 1.4E-13 4.8E-18 121.4 -14.0 130 21-183 63-202 (207)
88 2og2_A Putative signal recogni 99.0 4.4E-11 1.5E-15 114.0 0.4 101 22-168 211-314 (359)
89 1cr0_A DNA primase/helicase; R 99.0 8.3E-10 2.9E-14 102.4 7.9 80 107-187 129-237 (296)
90 3aez_A Pantothenate kinase; tr 98.9 2.4E-11 8E-16 114.0 -5.3 126 22-186 121-246 (312)
91 2v9p_A Replication protein E1; 98.9 4.6E-12 1.6E-16 118.1 -11.3 109 22-194 153-262 (305)
92 3thx_B DNA mismatch repair pro 98.8 2.4E-09 8.1E-14 113.2 6.9 81 106-189 734-816 (918)
93 2pt7_A CAG-ALFA; ATPase, prote 98.8 1.4E-09 4.8E-14 102.7 4.2 67 110-186 225-291 (330)
94 2o8b_B DNA mismatch repair pro 98.8 7.4E-09 2.5E-13 110.9 7.5 79 107-188 851-930 (1022)
95 2dpy_A FLII, flagellum-specifi 98.8 5E-10 1.7E-14 109.7 -1.4 121 20-194 211-340 (438)
96 2w0m_A SSO2452; RECA, SSPF, un 98.8 1E-08 3.5E-13 90.8 6.8 79 107-185 103-192 (235)
97 1nlf_A Regulatory protein REPA 98.7 3E-08 1E-12 91.1 6.9 78 83-168 99-181 (279)
98 1ewq_A DNA mismatch repair pro 98.6 1.4E-08 4.9E-13 105.6 5.0 77 106-190 634-716 (765)
99 3asz_A Uridine kinase; cytidin 98.5 2.7E-10 9.2E-15 100.2 -9.7 117 23-169 33-162 (211)
100 2cvh_A DNA repair and recombin 98.5 2.2E-07 7.5E-12 81.6 7.5 78 108-185 85-185 (220)
101 2ehv_A Hypothetical protein PH 98.5 1.6E-07 5.3E-12 84.2 6.1 73 109-183 119-206 (251)
102 2jeo_A Uridine-cytidine kinase 98.4 5.2E-08 1.8E-12 87.8 1.5 122 21-186 58-180 (245)
103 1wb9_A DNA mismatch repair pro 98.4 3.3E-07 1.1E-11 95.9 6.5 83 107-192 669-752 (800)
104 1pzn_A RAD51, DNA repair and r 98.3 3.2E-07 1.1E-11 87.2 5.1 82 109-191 208-308 (349)
105 4a74_A DNA repair and recombin 98.3 2.3E-07 7.9E-12 81.9 3.8 78 108-185 100-200 (231)
106 1tf7_A KAIC; homohexamer, hexa 98.3 1E-07 3.5E-12 95.5 1.4 60 124-184 137-209 (525)
107 3szr_A Interferon-induced GTP- 98.3 3.1E-08 1.1E-12 101.0 -3.0 121 19-193 94-232 (608)
108 2obl_A ESCN; ATPase, hydrolase 98.3 9.1E-08 3.1E-12 90.8 0.0 78 105-195 169-252 (347)
109 1z6g_A Guanylate kinase; struc 98.3 6.1E-09 2.1E-13 92.4 -8.2 75 107-182 122-207 (218)
110 1rj9_A FTSY, signal recognitio 98.2 9.3E-08 3.2E-12 89.1 -2.9 104 22-169 156-259 (304)
111 2qnr_A Septin-2, protein NEDD5 98.2 5.4E-08 1.8E-12 90.6 -4.7 105 22-169 63-168 (301)
112 2i3b_A HCR-ntpase, human cance 98.1 1.6E-07 5.5E-12 81.4 -1.4 78 106-190 82-168 (189)
113 2eyu_A Twitching motility prot 98.1 2.1E-06 7.1E-11 78.2 5.7 60 115-184 88-147 (261)
114 3jvv_A Twitching mobility prot 97.9 7.9E-06 2.7E-10 77.6 5.3 59 117-185 188-246 (356)
115 1pui_A ENGB, probable GTP-bind 97.8 1.2E-05 4E-10 69.8 4.4 72 83-160 129-202 (210)
116 3ec2_A DNA replication protein 97.8 2.4E-05 8E-10 66.5 5.7 49 122-171 97-146 (180)
117 2qag_C Septin-7; cell cycle, c 97.7 2.5E-06 8.5E-11 82.8 -1.9 98 22-167 75-176 (418)
118 1n0w_A DNA repair protein RAD5 97.7 6.3E-05 2.2E-09 66.6 6.7 77 108-185 99-209 (243)
119 1odf_A YGR205W, hypothetical 3 97.6 5.3E-06 1.8E-10 76.6 -1.2 38 105-142 132-169 (290)
120 2bdt_A BH3686; alpha-beta prot 97.5 8.5E-07 2.9E-11 76.2 -8.0 81 109-196 96-182 (189)
121 1lw7_A Transcriptional regulat 97.3 3E-05 1E-09 73.9 -0.7 76 107-184 258-343 (365)
122 2kjq_A DNAA-related protein; s 97.2 0.00031 1E-08 58.0 4.7 50 121-172 79-129 (149)
123 3lda_A DNA repair protein RAD5 97.1 0.00064 2.2E-08 65.4 6.4 62 124-185 272-363 (400)
124 2f1r_A Molybdopterin-guanine d 97.0 2.9E-05 1E-09 65.9 -3.4 69 83-158 85-164 (171)
125 2r6a_A DNAB helicase, replicat 97.0 0.0018 6E-08 63.4 8.7 79 107-187 295-401 (454)
126 1sxj_E Activator 1 40 kDa subu 97.0 0.00072 2.5E-08 63.4 5.6 46 122-170 131-176 (354)
127 2ewv_A Twitching motility prot 96.9 0.00097 3.3E-08 63.6 5.5 59 115-183 199-257 (372)
128 1udx_A The GTP-binding protein 96.8 0.00032 1.1E-08 67.9 1.7 71 106-181 251-321 (416)
129 2dr3_A UPF0273 protein PH0284; 96.6 0.0039 1.4E-07 54.9 7.3 61 124-184 127-196 (247)
130 2bbw_A Adenylate kinase 4, AK4 96.2 0.0003 1E-08 62.8 -2.7 44 106-156 151-199 (246)
131 1nij_A Hypothetical protein YJ 96.1 0.00062 2.1E-08 63.5 -1.3 50 107-169 141-190 (318)
132 2zr9_A Protein RECA, recombina 96.1 0.013 4.4E-07 55.3 7.6 79 114-192 126-237 (349)
133 2qag_B Septin-6, protein NEDD5 95.6 0.0022 7.5E-08 62.0 0.4 125 21-166 81-217 (427)
134 2xau_A PRE-mRNA-splicing facto 95.6 0.008 2.7E-07 62.7 4.3 76 105-181 188-264 (773)
135 3euj_A Chromosome partition pr 94.9 0.039 1.3E-06 54.1 6.6 71 105-183 377-464 (483)
136 3e70_C DPA, signal recognition 94.9 0.014 4.7E-07 54.5 3.2 95 24-168 185-279 (328)
137 2ce7_A Cell division protein F 93.8 0.084 2.9E-06 51.8 6.4 60 109-168 92-164 (476)
138 2ius_A DNA translocase FTSK; n 93.8 0.0049 1.7E-07 61.0 -2.5 80 85-169 248-343 (512)
139 1vma_A Cell division protein F 93.5 0.078 2.7E-06 48.9 5.3 59 83-154 151-212 (306)
140 1zp6_A Hypothetical protein AT 93.4 0.013 4.6E-07 49.4 -0.1 40 107-154 109-148 (191)
141 2rcn_A Probable GTPase ENGC; Y 93.3 0.0095 3.2E-07 56.3 -1.5 69 21-122 260-328 (358)
142 2yv5_A YJEQ protein; hydrolase 93.1 0.014 4.8E-07 53.7 -0.5 90 10-120 201-300 (302)
143 1ni3_A YCHF GTPase, YCHF GTP-b 92.9 0.00088 3E-08 64.2 -9.3 65 125-193 139-208 (392)
144 2gza_A Type IV secretion syste 92.5 0.092 3.1E-06 49.5 4.3 69 108-186 235-303 (361)
145 2px0_A Flagellar biosynthesis 92.5 0.17 5.7E-06 46.4 5.8 73 114-190 173-247 (296)
146 2z4s_A Chromosomal replication 92.4 0.066 2.3E-06 51.9 3.2 70 124-194 193-264 (440)
147 2yhs_A FTSY, cell division pro 92.4 0.014 4.6E-07 57.5 -1.8 127 21-195 346-476 (503)
148 1lw7_A Transcriptional regulat 92.1 0.079 2.7E-06 49.9 3.2 29 107-135 296-329 (365)
149 1g5t_A COB(I)alamin adenosyltr 91.6 0.16 5.6E-06 43.5 4.3 71 113-185 106-180 (196)
150 1ls1_A Signal recognition part 91.6 0.44 1.5E-05 43.4 7.6 46 109-154 164-210 (295)
151 4a1f_A DNAB helicase, replicat 91.3 0.2 6.9E-06 46.8 5.0 53 107-164 109-162 (338)
152 1in4_A RUVB, holliday junction 90.2 0.029 9.8E-07 52.3 -1.9 96 21-158 102-197 (334)
153 2e87_A Hypothetical protein PH 88.6 0.72 2.5E-05 43.1 6.5 57 106-165 230-287 (357)
154 1s96_A Guanylate kinase, GMP k 88.6 0.44 1.5E-05 41.4 4.7 50 120-185 102-151 (219)
155 1oix_A RAS-related protein RAB 87.5 0.15 5.3E-06 42.8 1.0 38 113-152 151-188 (191)
156 3b9p_A CG5977-PA, isoform A; A 86.8 1.8 6.1E-05 38.8 7.9 31 109-139 97-127 (297)
157 1lvg_A Guanylate kinase, GMP k 85.4 0.014 4.9E-07 50.0 -6.7 57 118-184 116-173 (198)
158 2z43_A DNA repair and recombin 79.3 1.7 5.8E-05 39.9 4.5 53 114-166 189-256 (324)
159 2qm8_A GTPase/ATPase; G protei 78.3 1.1 3.8E-05 41.5 2.9 46 106-155 209-260 (337)
160 2eyu_A Twitching motility prot 77.6 0.0037 1.3E-07 56.5 -14.0 64 95-163 161-235 (261)
161 3bh0_A DNAB-like replicative h 77.4 2.5 8.4E-05 38.7 4.9 52 108-164 134-187 (315)
162 1u94_A RECA protein, recombina 76.2 7.9 0.00027 36.1 8.1 74 115-188 129-235 (356)
163 2b8t_A Thymidine kinase; deoxy 75.8 3.7 0.00013 35.6 5.4 53 125-183 89-150 (223)
164 3k1j_A LON protease, ATP-depen 75.5 0.73 2.5E-05 46.4 0.8 46 106-152 182-227 (604)
165 2f9l_A RAB11B, member RAS onco 74.8 1.5 5.3E-05 36.6 2.6 37 115-153 129-165 (199)
166 3c8u_A Fructokinase; YP_612366 71.8 0.038 1.3E-06 47.5 -8.5 29 107-135 111-140 (208)
167 3hr8_A Protein RECA; alpha and 70.7 24 0.00082 32.8 10.0 71 114-184 126-229 (356)
168 2x8a_A Nuclear valosin-contain 70.0 0.1 3.5E-06 47.2 -6.4 28 106-135 136-163 (274)
169 2ewv_A Twitching motility prot 69.4 0.0094 3.2E-07 56.7 -14.1 44 95-141 272-317 (372)
170 1v5w_A DMC1, meiotic recombina 68.0 5.2 0.00018 36.9 4.8 53 114-166 204-272 (343)
171 2q6t_A DNAB replication FORK h 67.7 9.7 0.00033 36.4 6.8 57 108-166 293-361 (444)
172 2qtf_A Protein HFLX, GTP-bindi 66.0 3.6 0.00012 38.6 3.2 69 83-156 281-354 (364)
173 1fnn_A CDC6P, cell division co 65.2 10 0.00035 34.8 6.3 44 124-168 124-169 (389)
174 1p9r_A General secretion pathw 64.1 0.23 8E-06 47.7 -5.5 36 86-130 279-314 (418)
175 2oap_1 GSPE-2, type II secreti 62.5 0.011 3.7E-07 58.7 -15.6 57 106-176 399-457 (511)
176 1l8q_A Chromosomal replication 62.4 5.6 0.00019 36.1 3.8 46 124-170 97-143 (324)
177 2w58_A DNAI, primosome compone 61.7 3 0.0001 34.9 1.6 50 124-174 114-165 (202)
178 3bgw_A DNAB-like replicative h 60.7 20 0.00069 34.3 7.5 43 124-166 307-358 (444)
179 2orv_A Thymidine kinase; TP4A 60.5 13 0.00044 32.5 5.5 54 123-183 88-150 (234)
180 1ega_A Protein (GTP-binding pr 59.9 11 0.00038 33.9 5.3 67 108-181 101-171 (301)
181 1jjv_A Dephospho-COA kinase; P 59.2 1.7 6E-05 36.6 -0.3 68 109-182 61-130 (206)
182 1u0l_A Probable GTPase ENGC; p 58.0 1.2 3.9E-05 40.7 -1.8 52 23-100 221-289 (301)
183 3szr_A Interferon-induced GTP- 56.9 6.9 0.00024 39.3 3.6 59 107-166 164-223 (608)
184 1xx6_A Thymidine kinase; NESG, 55.2 22 0.00075 29.8 6.0 54 124-183 80-142 (191)
185 3cf0_A Transitional endoplasmi 55.0 16 0.00054 32.8 5.4 53 116-168 99-164 (301)
186 3llm_A ATP-dependent RNA helic 52.5 30 0.001 29.5 6.6 67 109-178 162-229 (235)
187 1njg_A DNA polymerase III subu 52.2 11 0.00038 31.5 3.7 41 125-168 126-166 (250)
188 3h4m_A Proteasome-activating n 52.2 17 0.00059 31.8 5.1 50 117-166 102-164 (285)
189 4ag6_A VIRB4 ATPase, type IV s 50.9 22 0.00074 33.1 5.8 45 124-169 261-308 (392)
190 2j9r_A Thymidine kinase; TK1, 50.5 13 0.00046 31.9 3.9 53 125-183 101-162 (214)
191 1t9h_A YLOQ, probable GTPase E 50.5 7.9 0.00027 35.3 2.6 20 24-44 225-248 (307)
192 1xp8_A RECA protein, recombina 49.4 67 0.0023 29.8 8.9 72 114-186 139-244 (366)
193 1sxj_D Activator 1 41 kDa subu 48.6 14 0.00049 33.4 4.1 42 125-169 133-174 (353)
194 1jcn_A Inosine monophosphate d 48.5 0.51 1.7E-05 46.6 -6.3 63 120-189 28-92 (514)
195 2i1q_A DNA repair and recombin 47.8 17 0.00058 32.9 4.4 51 116-166 192-257 (322)
196 4dgh_A Sulfate permease family 46.4 75 0.0026 24.1 7.5 53 124-179 47-100 (130)
197 3bh0_A DNAB-like replicative h 44.2 32 0.0011 31.1 5.7 60 124-183 178-264 (315)
198 1q57_A DNA primase/helicase; d 42.7 60 0.0021 31.3 7.8 67 116-183 343-440 (503)
199 3d8b_A Fidgetin-like protein 1 42.6 60 0.0021 29.7 7.4 20 115-134 166-185 (357)
200 2qgz_A Helicase loader, putati 41.8 11 0.00039 34.0 2.2 49 124-173 213-263 (308)
201 2qby_A CDC6 homolog 1, cell di 41.7 7.2 0.00025 35.7 0.8 44 124-168 127-173 (386)
202 4dgf_A Sulfate transporter sul 40.8 91 0.0031 23.9 7.2 52 124-178 50-102 (135)
203 3bos_A Putative DNA replicatio 38.1 27 0.00094 29.2 4.0 45 124-169 103-149 (242)
204 2orw_A Thymidine kinase; TMTK, 36.6 22 0.00075 29.4 3.0 54 124-183 75-137 (184)
205 3t34_A Dynamin-related protein 36.2 23 0.0008 32.5 3.4 57 108-165 155-211 (360)
206 3llo_A Prestin; STAS domain, c 36.0 1.3E+02 0.0045 23.0 7.5 53 125-180 63-116 (143)
207 2qz4_A Paraplegin; AAA+, SPG7, 35.9 51 0.0018 28.1 5.5 20 117-136 90-109 (262)
208 2qp9_X Vacuolar protein sortin 35.9 98 0.0033 28.2 7.7 20 117-136 135-154 (355)
209 3hu3_A Transitional endoplasmi 34.7 36 0.0012 33.1 4.6 51 118-168 290-350 (489)
210 4fcw_A Chaperone protein CLPB; 32.9 47 0.0016 29.2 4.9 35 118-153 111-146 (311)
211 2kln_A Probable sulphate-trans 32.3 59 0.002 24.7 4.8 52 125-179 47-99 (130)
212 2chg_A Replication factor C sm 32.0 54 0.0018 26.7 4.8 41 124-167 101-141 (226)
213 3ny7_A YCHM protein, sulfate t 32.0 85 0.0029 23.5 5.6 54 124-181 44-98 (118)
214 3cmw_A Protein RECA, recombina 30.5 1.1E+02 0.0038 34.5 8.1 72 115-186 798-902 (1706)
215 1sbo_A Putative anti-sigma fac 29.6 1.5E+02 0.0052 21.1 7.1 49 127-178 45-94 (110)
216 2q6t_A DNAB replication FORK h 27.9 1E+02 0.0035 29.1 6.5 53 107-164 264-316 (444)
217 1iy2_A ATP-dependent metallopr 27.0 0.89 3.1E-05 40.6 -7.9 22 107-128 169-190 (278)
218 3oiz_A Antisigma-factor antago 27.0 48 0.0016 24.1 3.2 52 124-178 42-94 (99)
219 2r8r_A Sensor protein; KDPD, P 27.0 34 0.0012 29.6 2.6 48 118-166 77-125 (228)
220 1m3s_A Hypothetical protein YC 26.9 91 0.0031 25.1 5.3 42 144-186 93-134 (186)
221 1xwi_A SKD1 protein; VPS4B, AA 25.4 3.1E+02 0.011 24.4 9.1 19 118-136 98-116 (322)
222 3cmu_A Protein RECA, recombina 25.3 1.4E+02 0.0047 34.5 7.7 73 115-187 449-554 (2050)
223 3co5_A Putative two-component 25.0 1.4E+02 0.0049 22.8 6.0 43 125-169 75-117 (143)
224 2zts_A Putative uncharacterize 25.0 33 0.0011 29.0 2.3 61 123-183 133-206 (251)
225 2xhz_A KDSD, YRBH, arabinose 5 24.9 91 0.0031 25.0 4.9 41 144-185 110-150 (183)
226 1tk9_A Phosphoheptose isomeras 24.5 90 0.0031 25.1 4.8 40 144-184 124-163 (188)
227 3sho_A Transcriptional regulat 24.3 97 0.0033 24.9 5.0 41 144-185 101-141 (187)
228 1b9m_A Protein (mode); DNA-bin 24.1 11 0.00037 33.1 -1.2 40 82-127 54-93 (265)
229 3cmw_A Protein RECA, recombina 23.9 2.1E+02 0.0073 32.3 8.8 71 117-187 451-554 (1706)
230 3k7i_B IHH, HHG-2, indian hedg 23.7 26 0.00088 29.1 1.1 32 124-155 70-101 (187)
231 2ka5_A Putative anti-sigma fac 23.2 2.3E+02 0.008 21.1 7.6 52 124-178 50-102 (125)
232 3kl4_A SRP54, signal recogniti 23.1 1.1E+02 0.0037 29.1 5.6 37 117-153 171-210 (433)
233 2xbl_A Phosphoheptose isomeras 23.1 1.1E+02 0.0036 24.9 5.0 39 145-184 131-169 (198)
234 1ixz_A ATP-dependent metallopr 23.0 1.1 3.6E-05 39.4 -8.1 26 107-134 145-170 (254)
235 3n70_A Transport activator; si 22.9 1.1E+02 0.0037 23.6 4.8 43 125-170 76-118 (145)
236 1vim_A Hypothetical protein AF 22.3 1.1E+02 0.0038 25.2 5.0 41 144-185 103-143 (200)
237 2p65_A Hypothetical protein PF 22.2 19 0.00064 28.8 0.0 43 124-166 114-160 (187)
238 3f6p_A Transcriptional regulat 22.2 2.2E+02 0.0075 20.3 6.9 41 123-169 44-84 (120)
239 3lte_A Response regulator; str 21.6 2.3E+02 0.0079 20.4 6.9 44 123-169 48-91 (132)
240 3fxa_A SIS domain protein; str 21.6 81 0.0028 25.9 4.0 41 144-185 106-146 (201)
241 1ypw_A Transitional endoplasmi 21.6 73 0.0025 33.0 4.4 53 116-168 288-350 (806)
242 1th8_B Anti-sigma F factor ant 21.5 1.8E+02 0.006 21.0 5.6 50 126-178 43-93 (116)
243 3eie_A Vacuolar protein sortin 21.3 3.4E+02 0.012 23.9 8.5 18 118-135 103-120 (322)
244 3gt7_A Sensor protein; structu 21.1 2.7E+02 0.0092 21.0 7.5 43 124-169 50-92 (154)
245 3lua_A Response regulator rece 21.0 2.5E+02 0.0086 20.6 6.8 44 124-169 49-92 (140)
246 1x92_A APC5045, phosphoheptose 20.9 1.5E+02 0.0053 24.0 5.6 41 144-185 127-170 (199)
247 3i42_A Response regulator rece 20.6 2.4E+02 0.0081 20.2 6.2 40 124-166 46-85 (127)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=6.7e-32 Score=257.30 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=127.1
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
..++.+|||+|+..++|.+||+||+.|+...++... .+. .++++++++.+||.+..++
T Consensus 77 ~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~----------~~~------------~~~v~~~l~~~gL~~~~~r 134 (359)
T 3fvq_A 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT----------AQE------------RQRIEAMLELTGISELAGR 134 (359)
T ss_dssp GGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCS----------HHH------------HHHHHHHHHHHTCGGGTTS
T ss_pred hhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCh----------HHH------------HHHHHHHHHHcCCchHhcC
Confidence 346789999999999999999999999765432111 111 1258889999999998887
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. +++..+|||
T Consensus 135 ~~~-----~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDr 208 (359)
T 3fvq_A 135 YPH-----ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADR 208 (359)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSE
T ss_pred Chh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCE
Confidence 765 59999999999999999999999999999999999999999988887766799999988654 689999999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
|++|++|+++..|++++
T Consensus 209 i~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 209 IAVMKQGRILQTASPHE 225 (359)
T ss_dssp EEEEETTEEEEEECHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999998864
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=8.7e-32 Score=256.70 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=126.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||||++.+++.+||+||+.|+....+.. ..+. .++++++|+.+||.+..++.+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~----------~~~~------------~~~v~~lL~~vgL~~~~~~~~ 161 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----------KDEV------------KRRVTELLSLVGLGDKHDSYP 161 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCC----------HHHH------------HHHHHHHHHHHTCGGGTTCCT
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCCchHhcCCh
Confidence 567999999999999999999999986543211 1111 125889999999998887766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+++|+ ...+..+||+|+
T Consensus 162 ~-----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~ 235 (366)
T 3tui_C 162 S-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVA 235 (366)
T ss_dssp T-----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999987679999998865 468889999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 236 vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 236 VISNGELIEQDTVSE 250 (366)
T ss_dssp EEETTEEEECCBHHH
T ss_pred EEECCEEEEEcCHHH
Confidence 999999999998764
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=9.5e-32 Score=257.96 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=131.4
Q ss_pred ccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC
Q 044411 12 LSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG 91 (363)
Q Consensus 12 ~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 91 (363)
.++......++.+|||+|+..++|.+||+||+.|+...++.. ..+. .++++++++.+|
T Consensus 65 ~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~----------~~~~------------~~~v~~~l~~~~ 122 (381)
T 3rlf_A 65 KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK----------KEVI------------NQRVNQVAEVLQ 122 (381)
T ss_dssp EECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCC----------HHHH------------HHHHHHHHHHTT
T ss_pred EECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcC
Confidence 444444445678999999999999999999999987544211 1111 125889999999
Q ss_pred CcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 92 LDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 92 L~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
|.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+ .++
T Consensus 123 L~~~~~r~p~-----~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~e 196 (381)
T 3rlf_A 123 LAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196 (381)
T ss_dssp CGGGTTCCGG-----GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC-HHH
T ss_pred CchhhcCChh-----HCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC-HHH
Confidence 9998887665 5999999999999999999999999999999999999999999999987668999998865 468
Q ss_pred HHhhhcceeeecCCeEEEecCCCC
Q 044411 172 TFDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
+..+||+|++|++|+++..|++++
T Consensus 197 a~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 197 AMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999998864
No 4
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=2.8e-31 Score=252.77 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=126.3
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
..++.+|||+|+..++|.+||+||+.|+...++... . .+++++++.+||++..++
T Consensus 69 ~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~----------~---------------~~v~~~l~~~~L~~~~~~ 123 (348)
T 3d31_A 69 PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD----------P---------------KRVLDTARDLKIEHLLDR 123 (348)
T ss_dssp HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC----------H---------------HHHHHHHHHTTCTTTTTS
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH----------H---------------HHHHHHHHHcCCchHhcC
Confidence 346789999999999999999999999764321100 0 147889999999998887
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. .++..+||+
T Consensus 124 ~~~-----~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adr 197 (348)
T 3d31_A 124 NPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADR 197 (348)
T ss_dssp CGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSE
T ss_pred Chh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCE
Confidence 765 59999999999999999999999999999999999999999999999876689999988754 588999999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
+++|++|+++..|++++
T Consensus 198 i~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 198 IAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp EEEESSSCEEEEECHHH
T ss_pred EEEEECCEEEEECCHHH
Confidence 99999999999998764
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=4.2e-31 Score=251.89 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=129.2
Q ss_pred cccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC
Q 044411 13 SVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL 92 (363)
Q Consensus 13 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 92 (363)
++......++.+|||+|+..++|.+||+||+.|+...++.. ..+. .++++++++.+||
T Consensus 78 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~----------~~~~------------~~~v~~~l~~~gL 135 (355)
T 1z47_A 78 RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP----------KDEM------------DARVRELLRFMRL 135 (355)
T ss_dssp ECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC----------HHHH------------HHHHHHHHHHTTC
T ss_pred ECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCC
Confidence 33333334678999999999999999999999976543211 1111 1258889999999
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. +++
T Consensus 136 ~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a 209 (355)
T 1z47_A 136 ESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEA 209 (355)
T ss_dssp GGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHH
T ss_pred hhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHH
Confidence 998887665 59999999999999999999999999999999999999999999999765688999988654 588
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..+||++++|++|+++..|++++
T Consensus 210 ~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 210 LEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHHCSEEEEEETTEEEEEECHHH
T ss_pred HHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999998764
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=4.9e-31 Score=251.96 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=129.1
Q ss_pred ccccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC
Q 044411 12 LSVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG 91 (363)
Q Consensus 12 ~~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 91 (363)
.++......++.+|||+|+..++|.+||+||+.|+...++. ...+. ..+++++++.+|
T Consensus 65 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~----------~~~~~------------~~~v~~~l~~~~ 122 (359)
T 2yyz_A 65 VLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI----------SKDEV------------EKRVVEIARKLL 122 (359)
T ss_dssp EECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS----------HHHHT------------THHHHHHHHHTT
T ss_pred EECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC----------CHHHH------------HHHHHHHHHHcC
Confidence 33333333467899999999999999999999997643211 00000 125888999999
Q ss_pred CcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 92 LDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 92 L~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
|.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. ++
T Consensus 123 L~~~~~r~~~-----~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~ 196 (359)
T 2yyz_A 123 IDNLLDRKPT-----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AE 196 (359)
T ss_dssp CGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HH
T ss_pred CchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HH
Confidence 9998887665 59999999999999999999999999999999999999999999999765688999988754 58
Q ss_pred HHhhhcceeeecCCeEEEecCCCC
Q 044411 172 TFDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
+..+||++++|++|+++..|++++
T Consensus 197 ~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 197 AMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHhCCEEEEEECCEEEEeCCHHH
Confidence 889999999999999999998764
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.6e-31 Score=251.84 Aligned_cols=155 Identities=23% Similarity=0.230 Sum_probs=128.9
Q ss_pred cccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC
Q 044411 13 SVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL 92 (363)
Q Consensus 13 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 92 (363)
++......++.+|||+|+..++|.+||+||+.|+...++.. ..+. ..+++++++.+||
T Consensus 66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~~------------~~~v~~~l~~~~L 123 (362)
T 2it1_A 66 DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP----------REEI------------DKKVREVAKMLHI 123 (362)
T ss_dssp ECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC----------HHHH------------HHHHHHHHHHTTC
T ss_pred ECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCC
Confidence 33333334578999999999999999999999976543210 1111 1258889999999
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. +++
T Consensus 124 ~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a 197 (362)
T 2it1_A 124 DKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEA 197 (362)
T ss_dssp TTCTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHH
T ss_pred chHhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHH
Confidence 988887665 59999999999999999999999999999999999999999999999765588999988754 588
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..+||+|++|++|+++..|++++
T Consensus 198 ~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 198 LAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHCSEEEEEETTEEEEEECHHH
T ss_pred HHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999998764
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=6e-31 Score=251.32 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=126.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|+..++|.+||+||+.|+...++.. ..+. .++++++++.+||.+..++.
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~~------------~~~v~~~l~~~~L~~~~~~~ 137 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS----------KEEI------------RKRVEEVAKILDIHHVLNHF 137 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC----------HHHH------------HHHHHHHHHHTTCGGGTTSC
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchHhcCC
Confidence 4678999999999999999999999976433210 1111 12488899999999988876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ +|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. +++..+||++
T Consensus 138 ~~-----~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri 211 (353)
T 1oxx_K 138 PR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRV 211 (353)
T ss_dssp GG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEE
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999765688999988755 5889999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+++..|++++
T Consensus 212 ~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 212 GVLVKGKLVQVGKPED 227 (353)
T ss_dssp EEEETTEEEEEECHHH
T ss_pred EEEECCEEEEEcCHHH
Confidence 9999999999998764
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=9.2e-31 Score=251.55 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=126.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|+..++|.+||+||+.|+...++.. ..+. ..+++++++.+||.+..++.
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~~------------~~~v~~~l~~~~L~~~~~r~ 136 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVP----------RQEI------------DQRVREVAELLGLTELLNRK 136 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCC----------HHHH------------HHHHHHHHHHHTCGGGTTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHCCCchHhcCC
Confidence 3577999999999999999999999986543211 1111 12488899999999988876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|++||+. .++..+||++
T Consensus 137 ~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri 210 (372)
T 1g29_1 137 PR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRI 210 (372)
T ss_dssp GG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEE
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999765688999988754 5889999999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+++..|++++
T Consensus 211 ~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 211 AVMNRGVLQQVGSPDE 226 (372)
T ss_dssp EEEETTEEEEEECHHH
T ss_pred EEEeCCEEEEeCCHHH
Confidence 9999999999998764
No 10
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=3.6e-31 Score=240.34 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=122.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|++.+++.+||+||+.++....+ . .... ++++++++.+||.+..++.
T Consensus 68 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----------~-~~~~-------------~~~~~~l~~~~l~~~~~~~ 123 (240)
T 2onk_A 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE----------R-VERD-------------RRVREMAEKLGIAHLLDRK 123 (240)
T ss_dssp TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC----------H-HHHH-------------HHHHHHHHTTTCTTTTTCC
T ss_pred hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC----------C-chHH-------------HHHHHHHHHcCCHHHhcCC
Confidence 35679999999999999999999998643211 0 0000 1478899999999888776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+. .++..+||++
T Consensus 124 ~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i 197 (240)
T 2onk_A 124 PA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEV 197 (240)
T ss_dssp GG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEE
T ss_pred hh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999765588999988764 5788999999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 198 ~~l~~G~i~~~g~~~ 212 (240)
T 2onk_A 198 AVMLNGRIVEKGKLK 212 (240)
T ss_dssp EEEETTEEEEEECHH
T ss_pred EEEECCEEEEECCHH
Confidence 999999999988754
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.8e-30 Score=235.27 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=120.6
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc-ccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC-ADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v 100 (363)
+.+|||+|++.+++.+||+||+.++........ ....+. .+++.++++.+||.+. .+..+
T Consensus 83 ~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~-------~~~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGA-------MSGEER------------RKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSC-------CCHHHH------------HHHHHHHHHHTTCCGGGTTCCG
T ss_pred ccEEEEecCCccCCCCcHHHHHHHHHHhhhccC-------CCHHHH------------HHHHHHHHHHCCCChhhhhCCh
Confidence 469999999999999999999998754321100 001111 1247888999999875 36555
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+.. +..+||+|+
T Consensus 144 -----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 -----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999997655899999988753 568999999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|+++..+++++
T Consensus 217 ~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 217 YLKDGEVEREEKLRG 231 (235)
T ss_dssp EEETTEEEEEEECC-
T ss_pred EEECCEEEEEcChhh
Confidence 999999999988764
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=8.2e-31 Score=251.56 Aligned_cols=155 Identities=20% Similarity=0.231 Sum_probs=122.2
Q ss_pred cccCccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC
Q 044411 13 SVTGEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL 92 (363)
Q Consensus 13 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 92 (363)
++......++.+|||+|+..++|.+||+||+.|+...++.. ..+. ..+++++++.+||
T Consensus 74 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~~~~------------~~~v~~~l~~~~L 131 (372)
T 1v43_A 74 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP----------KDEI------------DKRVRWAAELLQI 131 (372)
T ss_dssp ECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC----------HHHH------------HHHHHHHHHHTTC
T ss_pred ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------HHHH------------HHHHHHHHHHcCC
Confidence 33333334678999999999999999999999975432210 1111 1248889999999
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..++.++ .|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|.|+|+++|+. .++
T Consensus 132 ~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a 205 (372)
T 1v43_A 132 EELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEA 205 (372)
T ss_dssp GGGTTSCTT-----TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHH
T ss_pred hhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH
Confidence 998887665 59999999999999999999999999999999999999999999999765688999988754 588
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..+||++++|++|+++..|++++
T Consensus 206 ~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 206 MTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHCSEEEEEETTEEEEEECHHH
T ss_pred HHhCCEEEEEECCEEEEeCCHHH
Confidence 89999999999999999998764
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=2.4e-30 Score=239.26 Aligned_cols=147 Identities=23% Similarity=0.255 Sum_probs=122.4
Q ss_pred ceeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.+|||+|++. .++.+||+||+.|+....+.. ..+. .++++++++.+||.+..++.
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~L~~~~~~~ 140 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP----------EDEI------------RKRVDNALKRTGIEHLKDKP 140 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCC----------HHHH------------HHHHHHHHHHTTCGGGTTSB
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhcCC
Confidence 567999999863 445799999999976543211 1111 12488899999999888877
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+.. .+..+||+|
T Consensus 141 ~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv 214 (275)
T 3gfo_A 141 TH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNV 214 (275)
T ss_dssp GG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEE
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEE
Confidence 65 599999999999999999999999999999999999999999999997334899999987664 788899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|++++.|++++
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 215 FVMKEGRVILQGNPKE 230 (275)
T ss_dssp EEEETTEEEEEECHHH
T ss_pred EEEECCEEEEECCHHH
Confidence 9999999999998764
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=3.7e-30 Score=231.55 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=120.2
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++||+|++.+++.+||+||+.++....+.. ..+. ..+++++++.+||.+..++.++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----------~~~~------------~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKP----------KKEA------------KERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------HHHH------------HHHHHHHHHHTTCTTCTTCCGG
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCC----------HHHH------------HHHHHHHHHHcCCchhhhCChh
Confidence 56999999999999999999999875432110 0010 1247889999999988877665
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. ..+ .+||++++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEE
Confidence 59999999999999999999999999999999999999999999999875 89999998774 355 89999999
Q ss_pred ecCCeEEEecCC
Q 044411 182 MAEGKILYHGPR 193 (363)
Q Consensus 182 L~~G~iv~~G~~ 193 (363)
|++|++++.|+.
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999874
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=4.1e-30 Score=236.30 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=121.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhh-hhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFST-YCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
++.+|||+|++.+++.+||+||+.++. ...+. ...+. .++++++++.+||.+..++.
T Consensus 99 ~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~L~~~~~~~ 156 (263)
T 2olj_A 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKW----------PREKA------------EAKAMELLDKVGLKDKAHAY 156 (263)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCC----------CHHHH------------HHHHHHHHHHTTCGGGTTSC
T ss_pred hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCC----------CHHHH------------HHHHHHHHHHCCCchHhcCC
Confidence 456999999999999999999999864 22211 00010 12478899999999888776
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. +++..+||++
T Consensus 157 ~~-----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v 229 (263)
T 2olj_A 157 PD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRV 229 (263)
T ss_dssp GG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEE
T ss_pred hh-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999765 89999988754 5788899999
Q ss_pred eeecCCeEEEecCCC
Q 044411 180 ILMAEGKILYHGPRK 194 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~ 194 (363)
++|++|++++.|+++
T Consensus 230 ~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 230 LFMDGGYIIEEGKPE 244 (263)
T ss_dssp EEEETTEEEEEECHH
T ss_pred EEEECCEEEEECCHH
Confidence 999999999988764
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=5e-30 Score=235.90 Aligned_cols=145 Identities=21% Similarity=0.201 Sum_probs=121.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhh-hhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc-ccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFST-YCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC-ADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 98 (363)
++.+|||+|++.+++.+||+||+.++. ...+. ...+. ..+++++++.+||.+. .++
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~------------~~~~~~~l~~~~L~~~~~~~ 149 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SKHDA------------RERALKYLAKVGIDERAQGK 149 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CHHHH------------HHHHHHHHHHTTCCHHHHTS
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCC----------CHHHH------------HHHHHHHHHHcCCCchhhcC
Confidence 457999999999999999999999853 22211 00010 1247889999999988 777
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. .++..+||+
T Consensus 150 ~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~ 222 (262)
T 1b0u_A 150 YPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSH 222 (262)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSE
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCE
Confidence 665 59999999999999999999999999999999999999999999999765 88999988764 578889999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+++
T Consensus 223 v~~l~~G~i~~~g~~~ 238 (262)
T 1b0u_A 223 VIFLHQGKIEEEGDPE 238 (262)
T ss_dssp EEEEETTEEEEEECHH
T ss_pred EEEEECCEEEEeCCHH
Confidence 9999999999988754
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=4.4e-30 Score=236.65 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=123.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.++....... +...+++++++.+||.+..++.+
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~ 139 (266)
T 4g1u_C 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS------------------------QDRQALQQVMAQTDCLALAQRDY 139 (266)
T ss_dssp HHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST------------------------THHHHHHHHHHHTTCSTTTTSBG
T ss_pred hheEEEEecCCccCCCCCHHHHHHhhhhhcCcH------------------------HHHHHHHHHHHHcCChhHhcCCc
Confidence 456999999999989999999999875432100 00124788999999998888766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhC------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVG------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
+ .|||||||||+|||||++ +|++|||||||+|||+.++..+++.|++++++.+.|||+++|+. +++..
T Consensus 140 ~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~ 213 (266)
T 4g1u_C 140 R-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAAL 213 (266)
T ss_dssp G-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHH
T ss_pred c-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHH
Confidence 5 599999999999999999 99999999999999999999999999999876667999988654 58888
Q ss_pred hhcceeeecCCeEEEecCCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
+||++++|++|++++.|++++.
T Consensus 214 ~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 214 YADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HCSEEEEEETTEEEEEECHHHH
T ss_pred hCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999987643
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=6.7e-30 Score=234.53 Aligned_cols=154 Identities=24% Similarity=0.259 Sum_probs=122.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhh----hcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE----LSGREEEARIIPDPDIDTYMKTDYNLKILGLDICA 96 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 96 (363)
++.+|||+|++.+++.+||+||+.++......+ ....... ....+ ...+++++++.+||++..
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~l~~~~ 147 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGES-PLNSLFYKKWIPKEEE------------MVEKAFKILEFLKLSHLY 147 (257)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC-HHHHHHHCSSCCCCHH------------HHHHHHHHHHHTTCGGGT
T ss_pred hCCEEEEccCCccCCCCcHHHHHHHHHhhhccC-cccccccccccCCHHH------------HHHHHHHHHHHcCCchhh
Confidence 456999999999999999999999864320000 0000000 00000 112478899999999888
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+.. ++..+|
T Consensus 148 ~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~ 220 (257)
T 1g6h_A 148 DRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD-IVLNYI 220 (257)
T ss_dssp TSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS-TTGGGC
T ss_pred CCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhC
Confidence 87765 59999999999999999999999999999999999999999999999764 899999987764 788899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|++++.|+++
T Consensus 221 d~v~~l~~G~i~~~g~~~ 238 (257)
T 1g6h_A 221 DHLYVMFNGQIIAEGRGE 238 (257)
T ss_dssp SEEEEEETTEEEEEEESH
T ss_pred CEEEEEECCEEEEEeCHH
Confidence 999999999999988764
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.1e-29 Score=232.56 Aligned_cols=145 Identities=24% Similarity=0.235 Sum_probs=121.9
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|++.+++.+||+||+.+.....+.. ..+. ..+++++++.+||.+..++.+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~----------~~~~------------~~~~~~~l~~~gL~~~~~~~~ 144 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS----------SSEI------------EEMVERATEIAGLGEKIKDRV 144 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC----------HHHH------------HHHHHHHHHHHCCGGGGGSBG
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC----------hHHH------------HHHHHHHHHHCCCchHhcCCh
Confidence 457999999999999999999999865332110 0000 114788899999998888776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. +++..+||+++
T Consensus 145 ~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~ 217 (256)
T 1vpl_A 145 S-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIA 217 (256)
T ss_dssp G-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEE
Confidence 5 5999999999999999999999999999999999999999999999976 488999988765 57888999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 218 ~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 218 LIHNGTIVETGTVE 231 (256)
T ss_dssp EEETTEEEEEEEHH
T ss_pred EEECCEEEEecCHH
Confidence 99999999988754
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.9e-29 Score=228.02 Aligned_cols=143 Identities=21% Similarity=0.283 Sum_probs=118.4
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-Ccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-LDICADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v 100 (363)
+.+|||+|++.+++.+||+||+.++.... ... .+ ...+++++++.++ |.+..++.+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~----------~~------------~~~~~~~~l~~~~~l~~~~~~~~ 137 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNR-KDK----------EG------------IKRDLEWIFSLFPRLKERLKQLG 137 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCS----------SH------------HHHHHHHHHHHCHHHHTTTTSBS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcC-CCH----------HH------------HHHHHHHHHHHcccHhhHhcCCh
Confidence 45999999999999999999998864211 000 00 0113677889994 887777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|+. .++..+||+++
T Consensus 138 ~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~ 210 (240)
T 1ji0_A 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGY 210 (240)
T ss_dssp S-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999976 588999988765 57889999999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 211 ~l~~G~i~~~g~~~ 224 (240)
T 1ji0_A 211 VLETGQIVLEGKAS 224 (240)
T ss_dssp EEETTEEEEEEEHH
T ss_pred EEECCEEEEEcCHH
Confidence 99999999888754
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=7.5e-29 Score=226.87 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=122.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.+|||+|++.+++.+||+||+.++........ ...... ...+++++++.+||.+..++.
T Consensus 64 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~------~~~~~~------------~~~~~~~~l~~~~l~~~~~~~ 125 (253)
T 2nq2_C 64 VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF------AKPKSH------------DYQVAMQALDYLNLTHLAKRE 125 (253)
T ss_dssp ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT------CCCCHH------------HHHHHHHHHHHTTCGGGTTSB
T ss_pred EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccc------cCCCHH------------HHHHHHHHHHHcCChHHhcCC
Confidence 45679999999999999999999998643210000 000000 012478899999999888876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+. +.+..+||++
T Consensus 126 ~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v 199 (253)
T 2nq2_C 126 FT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKT 199 (253)
T ss_dssp GG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEE
T ss_pred hh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999999765588999988765 5788899999
Q ss_pred eeecCCeEEEecCCCC
Q 044411 180 ILMAEGKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~G~iv~~G~~~~ 195 (363)
++|++|+ ++.|++++
T Consensus 200 ~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 200 LLLNKQN-FKFGETRN 214 (253)
T ss_dssp EEEETTE-EEEEEHHH
T ss_pred EEEeCCe-EecCCHHH
Confidence 9999999 88887653
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=1.4e-28 Score=226.85 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=119.9
Q ss_pred cceeEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc--ccc
Q 044411 20 PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD--ICA 96 (363)
Q Consensus 20 ~~~~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~ 96 (363)
.++.+|||+|++ ..++.+||+||+.++.... .... +...+++++++.+||. +..
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~----------------------~~~~~~~~~l~~~gl~~~~~~ 132 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDR----------------------DPVPLVKKAMEFVGLDFDSFK 132 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTS----------------------CSHHHHHHHHHHTTCCHHHHT
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHH----------------------HHHHHHHHHHHHcCcCCcccc
Confidence 356799999985 5677899999998864221 0000 0012478889999998 887
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+.. .+..+|
T Consensus 133 ~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~ 205 (266)
T 2yz2_A 133 DRVPF-----FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHV 205 (266)
T ss_dssp TCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGC
T ss_pred cCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhC
Confidence 77665 59999999999999999999999999999999999999999999999765 889999987764 777899
Q ss_pred cceeeecCCeEEEecCCC
Q 044411 177 DDIILMAEGKILYHGPRK 194 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~ 194 (363)
|++++|++|++++.|+++
T Consensus 206 d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 206 DRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp SEEEEEETTEEEEEEEHH
T ss_pred CEEEEEECCEEEEeCCHH
Confidence 999999999999888754
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=1e-28 Score=225.29 Aligned_cols=141 Identities=20% Similarity=0.184 Sum_probs=120.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||+||+.++.... .. ..+++++++.+||.+..++.+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----------~~----------------~~~~~~~l~~~~l~~~~~~~~ 124 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDK-----------TR----------------TELLNDVAGALALDDKLGRST 124 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTCSST-----------TC----------------HHHHHHHHHHTTCGGGTTSBG
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhhccC-----------Cc----------------HHHHHHHHHHcCChhHhcCCh
Confidence 456999999999999999999998752110 00 014778899999998887765
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCc-------EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIK-------AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~-------lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
+ .|||||||||+||+||+.+|+ +|||||||+|||+.++..+++.|++++++ |.|||+++|+. ..+.
T Consensus 125 ~-----~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~ 197 (249)
T 2qi9_C 125 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTL 197 (249)
T ss_dssp G-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHH
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHH
Confidence 4 599999999999999999999 99999999999999999999999999765 88999988765 5778
Q ss_pred hhhcceeeecCCeEEEecCCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
.+||++++|++|++++.|++++
T Consensus 198 ~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 198 RHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp HHCSEEEEEETTEEEEEEEHHH
T ss_pred HhCCEEEEEECCEEEEeCCHHH
Confidence 8999999999999999887653
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=2.3e-28 Score=226.67 Aligned_cols=150 Identities=20% Similarity=0.286 Sum_probs=118.2
Q ss_pred ceeEEEEccccccC--CCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 21 QKLSAYVSQYDLHI--PEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~--~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
++.+|||+|++.++ +.+||+||+.++..... . .. .....+ ...+++++++.+||.+..++
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~-~----~~-~~~~~~------------~~~~~~~~l~~~gl~~~~~~ 157 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-G----VY-QDIDDE------------IRNEAHQLLKLVGMSAKAQQ 157 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------------CCHH------------HHHHHHHHHHHTTCGGGTTS
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc-c----cc-cCCcHH------------HHHHHHHHHHHcCChhHhcC
Confidence 46799999987643 45799999988632110 0 00 000000 01247889999999988887
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE--EEEecCCChHHHhhh
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI--LISLLQPSPETFDLF 176 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti--i~~~h~~~~~~~~~~ 176 (363)
.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|| |+++|+. .++..+|
T Consensus 158 ~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~ 230 (279)
T 2ihy_A 158 YIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANF 230 (279)
T ss_dssp BGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTC
T ss_pred Chh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhC
Confidence 765 59999999999999999999999999999999999999999999999875 8888 8888765 4778899
Q ss_pred cceeeecCCeEEEecCCCC
Q 044411 177 DDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 177 D~v~vL~~G~iv~~G~~~~ 195 (363)
|++++|++|++++.|++++
T Consensus 231 d~v~~l~~G~i~~~g~~~~ 249 (279)
T 2ihy_A 231 SKILLLKDGQSIQQGAVED 249 (279)
T ss_dssp CEEEEEETTEEEEEEEHHH
T ss_pred CEEEEEECCEEEEECCHHH
Confidence 9999999999999887653
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=4.6e-28 Score=221.40 Aligned_cols=146 Identities=19% Similarity=0.238 Sum_probs=112.9
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhh-ccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCC-ccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYC-QGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGL-DICADTL 99 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ 99 (363)
+.++|++|++.+++.+||+||+.++... .+... ...+. ..+++++++.+|| .+..++.
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~--------~~~~~------------~~~~~~~l~~~gl~~~~~~~~ 139 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV--------GVAEF------------WTKVKKALELLDWDESYLSRY 139 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCC--------CHHHH------------HHHHHHHHHHHTCCGGGGGSB
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccC--------CHHHH------------HHHHHHHHHHcCCChhHhcCC
Confidence 3589999999999999999999886421 11000 00000 1247888999999 4777766
Q ss_pred ccCCcCCC-CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh-hc
Q 044411 100 VGDAIRRG-ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL-FD 177 (363)
Q Consensus 100 vg~~~~~~-LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~-~D 177 (363)
++ . |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|+. ..+..+ ||
T Consensus 140 ~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d 212 (250)
T 2d2e_A 140 LN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPD 212 (250)
T ss_dssp TT-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCS
T ss_pred cc-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCC
Confidence 54 5 999999999999999999999999999999999999999999999965 588999998876 466677 59
Q ss_pred ceeeecCCeEEEecCCC
Q 044411 178 DIILMAEGKILYHGPRK 194 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~ 194 (363)
++++|++|++++.|+++
T Consensus 213 ~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 213 KVHVMMDGRVVATGGPE 229 (250)
T ss_dssp EEEEEETTEEEEEESHH
T ss_pred EEEEEECCEEEEEeCHH
Confidence 99999999999888753
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=1.5e-27 Score=220.29 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=114.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc--CCcccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL--GLDICADT 98 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~ 98 (363)
++.++||+|++.+++ .||+||+.++.... .. .. ........ ..+.++++.+ |+....+.
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~-~~---~~~~~~~~------------~~~~~~l~~l~~gl~~~~~~ 152 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PT-ME---EITAVAME------------SGAHDFISGFPQGYDTEVGE 152 (271)
T ss_dssp HHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CC-HH---HHHHHHHH------------HTCHHHHHHSTTGGGSBCCG
T ss_pred hccEEEEecCCcccc-ccHHHHHhhhcccC--Ch-HH---HHHHHHHH------------HhHHHHHHhhhcchhhhhcC
Confidence 457999999998887 59999999864211 00 00 00000000 1256677877 67766665
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|+|||+++|+. ..+ ..||+
T Consensus 153 ~~-----~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~ 225 (271)
T 2ixe_A 153 TG-----NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHH 225 (271)
T ss_dssp GG-----TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSE
T ss_pred Cc-----CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCE
Confidence 54 469999999999999999999999999999999999999999999998754588999998765 344 46999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|+++..|+++
T Consensus 226 v~~l~~G~i~~~g~~~ 241 (271)
T 2ixe_A 226 ILFLKEGSVCEQGTHL 241 (271)
T ss_dssp EEEEETTEEEEEECHH
T ss_pred EEEEECCEEEEECCHH
Confidence 9999999999988754
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=4.2e-27 Score=216.97 Aligned_cols=148 Identities=19% Similarity=0.185 Sum_probs=117.1
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhh-hc---cCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTY-CQ---GVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICA 96 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 96 (363)
+.++|++|++.+++.+||.||+.+... .. +.. .....+ ...+++++++.+||. +..
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~-------~~~~~~------------~~~~~~~~l~~~gl~~~~~ 157 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE-------TLDRFD------------FQDLMEEKIALLKMPEDLL 157 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCC-------CCCHHH------------HHHHHHHHHHHTTCCTTTT
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccc-------cCCHHH------------HHHHHHHHHHHcCCChhHh
Confidence 348999999999999999999987531 10 000 000000 012478899999996 466
Q ss_pred cccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh-
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL- 175 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~- 175 (363)
++.++ ..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|+. ..+..+
T Consensus 158 ~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~ 231 (267)
T 2zu0_C 158 TRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIK 231 (267)
T ss_dssp TSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSC
T ss_pred cCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhc
Confidence 65543 14999999999999999999999999999999999999999999999865 488999998765 466665
Q ss_pred hcceeeecCCeEEEecCCC
Q 044411 176 FDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 176 ~D~v~vL~~G~iv~~G~~~ 194 (363)
||++++|++|++++.|+++
T Consensus 232 ~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 232 PDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp CSEEEEEETTEEEEEECTT
T ss_pred CCEEEEEECCEEEEEcCHH
Confidence 8999999999999998864
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=2.3e-27 Score=222.10 Aligned_cols=141 Identities=20% Similarity=0.304 Sum_probs=109.6
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-----
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI----- 94 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----- 94 (363)
.++.+|||+|++.+|+ .||+||+.|+..... .. ++.++++..++.+
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~----~~------------------------~~~~~~~~~~l~~~i~~l 176 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRVTAG----ND------------------------EVEAAAQAAGIHDAIMAF 176 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTSTTCC----HH------------------------HHHHHHHHHTCHHHHHHS
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhcccCC----HH------------------------HHHHHHHHhCcHHHHHhc
Confidence 3567999999998885 699999998642110 00 1223333333322
Q ss_pred --cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 95 --CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 95 --~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
..++.+|. ....|||||||||+|||||+.+|+||||||||+|||+.+...|++.|+++.+ ++|+|+++|+.. .+
T Consensus 177 p~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~-~~ 252 (306)
T 3nh6_A 177 PEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLS-TV 252 (306)
T ss_dssp TTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHH-HH
T ss_pred cchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChH-HH
Confidence 33455553 4567999999999999999999999999999999999999999999999864 689999887653 55
Q ss_pred HhhhcceeeecCCeEEEecCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
. .||+|++|++|++++.|+++
T Consensus 253 ~-~aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 253 V-NADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp H-TCSEEEEEETTEEEEEECHH
T ss_pred H-cCCEEEEEECCEEEEECCHH
Confidence 5 49999999999999999865
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=3.1e-27 Score=217.14 Aligned_cols=136 Identities=11% Similarity=-0.024 Sum_probs=114.5
Q ss_pred ceeEE-EEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccc
Q 044411 21 QKLSA-YVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADT 98 (363)
Q Consensus 21 ~~~~~-yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 98 (363)
++.++ |++|++.+ .+||+||+.++..... . ...+++++++.+||. +..++
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~--~------------------------~~~~~~~~l~~~gl~~~~~~~ 124 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELKG--L------------------------DRDLFLEMLKALKLGEEILRR 124 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHTC--C------------------------CHHHHHHHHHHTTCCGGGGGS
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhcc--h------------------------HHHHHHHHHHHcCCChhHhcC
Confidence 45799 99999877 8999999988643210 0 011477889999998 87777
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc-
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD- 177 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D- 177 (363)
.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ |||+++|+. +.+..+||
T Consensus 125 ~~~-----~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~ 194 (263)
T 2pjz_A 125 KLY-----KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEY 194 (263)
T ss_dssp BGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTS
T ss_pred Chh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCc
Confidence 665 5999999999999999999999999999999999999999999998742 888888765 47788999
Q ss_pred ceeeecCCeEEEecCCC
Q 044411 178 DIILMAEGKILYHGPRK 194 (363)
Q Consensus 178 ~v~vL~~G~iv~~G~~~ 194 (363)
++++|++|++++.|+++
T Consensus 195 ~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 195 KAYFLVGNRLQGPISVS 211 (263)
T ss_dssp EEEEEETTEEEEEEEHH
T ss_pred eEEEEECCEEEEecCHH
Confidence 99999999999988764
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=5.8e-27 Score=213.65 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=110.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|++.+++ .||+||+.++... .. . .++.++++.+++.+..++..
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~--------~----------------~~~~~~l~~~~l~~~~~~~~ 132 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANPG----MS--------V----------------EKVIYAAKLAGAHDFISELR 132 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCTT----CC--------H----------------HHHHHHHHHHTCHHHHHTST
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCCC----CC--------H----------------HHHHHHHHHhChHHHHHhCc
Confidence 457999999998886 6999999875210 00 0 02445566666655443321
Q ss_pred ------cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 ------GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 ------g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
-+..+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ .|+|||+++|+.. .+ .
T Consensus 133 ~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~ 208 (247)
T 2ff7_A 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-K 208 (247)
T ss_dssp TGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-T
T ss_pred chhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-H
Confidence 012356799999999999999999999999999999999999999999999984 3889999998764 44 4
Q ss_pred hhcceeeecCCeEEEecCCC
Q 044411 175 LFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~ 194 (363)
.||++++|++|++++.|+++
T Consensus 209 ~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 209 NADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp TSSEEEEEETTEEEEEECHH
T ss_pred hCCEEEEEECCEEEEECCHH
Confidence 69999999999999988764
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=1.3e-26 Score=206.69 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|++.+++.+||+||+.++....+. . . + ..+++++++.+||++. +..
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~----------~------------~-~~~~~~~l~~~gl~~~-~~~ 130 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K----------V------------N-KNEIMDALESVEVLDL-KKK 130 (214)
T ss_dssp GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C----------C------------C-HHHHHHHHHHTTCCCT-TSB
T ss_pred hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c----------h------------H-HHHHHHHHHHcCCCcC-CCC
Confidence 356799999999999999999999886432210 0 0 0 1147788999999877 665
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|++. ++..+||++
T Consensus 131 ~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v 203 (214)
T 1sgw_A 131 L-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENL 203 (214)
T ss_dssp G-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEG
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEE
Confidence 5 469999999999999999999999999999999999999999999999764 789999998765 778889998
Q ss_pred eeecCCeE
Q 044411 180 ILMAEGKI 187 (363)
Q Consensus 180 ~vL~~G~i 187 (363)
+++ .|+|
T Consensus 204 ~~~-~~~~ 210 (214)
T 1sgw_A 204 HKY-STKI 210 (214)
T ss_dssp GGG-BC--
T ss_pred EEe-CCcc
Confidence 866 4444
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=2.9e-27 Score=215.26 Aligned_cols=142 Identities=21% Similarity=0.205 Sum_probs=112.6
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.++.++||+|++.+++ .||+||+.++.... . . ..++.++++.+++.+..++.
T Consensus 74 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~--------~----------------~~~~~~~l~~~~l~~~~~~~ 125 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMA-GTIRENLTYGLEGD---Y--------T----------------DEDLWQVLDLAFARSFVENM 125 (243)
T ss_dssp CTTTCCEECCSSCCCC-EEHHHHTTSCTTSC---S--------C----------------HHHHHHHHHHHTCTTTTTSS
T ss_pred HHhhEEEEcCCCcccc-ccHHHHHhhhccCC---C--------C----------------HHHHHHHHHHhChHHHHHhC
Confidence 3567999999998887 59999998752100 0 0 01356678888887765543
Q ss_pred cc------CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 100 VG------DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 100 vg------~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
.. +..+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |+|||+++|+.. .+
T Consensus 126 ~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~-~~- 201 (243)
T 1mv5_A 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS-TI- 201 (243)
T ss_dssp TTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH-HH-
T ss_pred ccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH-HH-
Confidence 21 13456899999999999999999999999999999999999999999999986 3 889999988753 44
Q ss_pred hhhcceeeecCCeEEEecCC
Q 044411 174 DLFDDIILMAEGKILYHGPR 193 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~ 193 (363)
..||++++|++|++++.|++
T Consensus 202 ~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 202 VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHCSEEEEEETTEECCCSCH
T ss_pred HhCCEEEEEECCEEEEeCCH
Confidence 56999999999999876654
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=2.5e-26 Score=211.00 Aligned_cols=140 Identities=23% Similarity=0.314 Sum_probs=109.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc------
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI------ 94 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------ 94 (363)
++.++||+|++.+++ .||+||+.++.. . .. . .++.++++.+++.+
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~-~---~~--------~----------------~~~~~~l~~~~l~~~~~~l~ 142 (260)
T 2ghi_A 92 RSIIGIVPQDTILFN-ETIKYNILYGKL-D---AT--------D----------------EEVIKATKSAQLYDFIEALP 142 (260)
T ss_dssp HTTEEEECSSCCCCS-EEHHHHHHTTCT-T---CC--------H----------------HHHHHHHHHTTCHHHHHTST
T ss_pred hccEEEEcCCCcccc-cCHHHHHhccCC-C---CC--------H----------------HHHHHHHHHhCCHHHHHhcc
Confidence 467999999998886 699999987521 0 00 0 01334455555433
Q ss_pred -cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 95 -CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 95 -~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
..++.++ ..+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++. .+
T Consensus 143 ~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~- 217 (260)
T 2ghi_A 143 KKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI- 217 (260)
T ss_dssp TGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-
T ss_pred cccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-
Confidence 3444443 34568999999999999999999999999999999999999999999999853 789999998764 44
Q ss_pred hhhcceeeecCCeEEEecCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~ 194 (363)
..||++++|++|+++..|+++
T Consensus 218 ~~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 218 SSAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp TTCSEEEEEETTEEEEEECHH
T ss_pred HhCCEEEEEECCEEEEECCHH
Confidence 469999999999999888753
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.5e-27 Score=225.35 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=114.5
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|++.+|+ +||+||+.+.... . ..++.++++.++|.+..++..
T Consensus 93 rr~ig~v~Q~~~lf~-~tv~enl~~~~~~-------------~----------------~~~v~~~l~~~~L~~~~~~~p 142 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS-GTFRKNLDPNAAH-------------S----------------DQEIWKVADEVGLRSVIEQFP 142 (390)
T ss_dssp HHTEEEESCCCCCCS-EEHHHHHCTTCCS-------------C----------------HHHHHHHHHHTTCHHHHTTST
T ss_pred hCCEEEEcCCcccCc-cCHHHHhhhcccc-------------C----------------HHHHHHHHHHhCCHHHHhhcc
Confidence 578999999999987 6999999642110 0 013677889999988776654
Q ss_pred cC------CcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 101 GD------AIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 101 g~------~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
.. .....|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++. .+.|+|+++|+. ++..
T Consensus 143 ~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~ 218 (390)
T 3gd7_A 143 GKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAML 218 (390)
T ss_dssp TGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGT
T ss_pred cccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHH
Confidence 32 1223499999999999999999999999999999999999999999999864 378899888764 4556
Q ss_pred hhcceeeecCCeEEEecCCCC
Q 044411 175 LFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 175 ~~D~v~vL~~G~iv~~G~~~~ 195 (363)
.||+|++|++|+++..|++++
T Consensus 219 ~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 219 ECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp TCSEEEEEETTEEEEESSHHH
T ss_pred hCCEEEEEECCEEEEECCHHH
Confidence 799999999999999998864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.93 E-value=8.9e-26 Score=203.57 Aligned_cols=138 Identities=19% Similarity=0.273 Sum_probs=102.3
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-------
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI------- 94 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 94 (363)
..++|++|++.+++. ||+||+.++.... . . +..+.++.+++.+
T Consensus 69 g~i~~v~q~~~~~~~-tv~enl~~~~~~~----~-~------------------------~~~~~~~~~~l~~~~~~~~~ 118 (229)
T 2pze_A 69 GRISFCSQFSWIMPG-TIKENIIFGVSYD----E-Y------------------------RYRSVIKACQLEEDISKFAE 118 (229)
T ss_dssp SCEEEECSSCCCCSB-CHHHHHHTTSCCC----H-H------------------------HHHHHHHHTTCHHHHTTSTT
T ss_pred CEEEEEecCCcccCC-CHHHHhhccCCcC----h-H------------------------HHHHHHHHhCcHHHHHhCcc
Confidence 358999999988885 9999998853210 0 0 0111122222221
Q ss_pred cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHH-HHHHhhcCCCEEEEEecCCChHHH
Q 044411 95 CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTC-LQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 95 ~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~-l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
..++.++ ..+..|||||||||+|||||+.+|++|||||||+|||+.++..+++. ++++. .|+|||+++|+. ..+
T Consensus 119 ~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~- 193 (229)
T 2pze_A 119 KDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL- 193 (229)
T ss_dssp GGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-
T ss_pred ccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-
Confidence 1233333 23567999999999999999999999999999999999999999996 45554 378999998775 354
Q ss_pred hhhcceeeecCCeEEEecCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~ 194 (363)
..||++++|++|++++.|+++
T Consensus 194 ~~~d~v~~l~~G~i~~~g~~~ 214 (229)
T 2pze_A 194 KKADKILILHEGSSYFYGTFS 214 (229)
T ss_dssp HHCSEEEEEETTEEEEEECHH
T ss_pred HhCCEEEEEECCEEEEECCHH
Confidence 469999999999999988754
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.92 E-value=3.8e-25 Score=225.87 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=115.7
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc------
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI------ 94 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------ 94 (363)
++.++||+|++.+++ .||+||+.++..... ... .++++++++.+++.+
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~---------~~~----------------~~~~~~~~~~~~l~~~~~~l~ 470 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGADDPS---------SVT----------------AEEIQRVAEVANAVAFIRNFP 470 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSSSTT---------TSC----------------HHHHHHHHHHTTCHHHHHTSS
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCCCcc---------ccC----------------HHHHHHHHHHcCCHHHHHhCc
Confidence 567999999999887 599999988632100 000 013566677776543
Q ss_pred -cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 95 -CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 95 -~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
..|+.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. .+
T Consensus 471 ~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~~- 545 (595)
T 2yl4_A 471 QGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS-TI- 545 (595)
T ss_dssp SGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH-HH-
T ss_pred ccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HH-
Confidence 45677764 4577999999999999999999999999999999999999999999999864 689999988753 44
Q ss_pred hhhcceeeecCCeEEEecCCCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
..||+|++|++|++++.|++++.
T Consensus 546 ~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 546 KNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHSSEEEEEETTEEEEEECSCC-
T ss_pred HcCCEEEEEECCEEEEECCHHHH
Confidence 56999999999999999998765
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=201.26 Aligned_cols=143 Identities=22% Similarity=0.212 Sum_probs=102.0
Q ss_pred eEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-ccccccc
Q 044411 23 LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI-CADTLVG 101 (363)
Q Consensus 23 ~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 101 (363)
.++||+|++. ++.+||+||+.++.... .. . ..... +...+++.+++.+ ..++.++
T Consensus 67 ~i~~v~Q~~~-~~~~tv~enl~~~~~~~--~~---~------~~~~~------------~~~~l~~~~~~~~~~~~~~~~ 122 (237)
T 2cbz_A 67 SVAYVPQQAW-IQNDSLRENILFGCQLE--EP---Y------YRSVI------------QACALLPDLEILPSGDRTEIG 122 (237)
T ss_dssp CEEEECSSCC-CCSEEHHHHHHTTSCCC--TT---H------HHHHH------------HHTTCHHHHTTSTTGGGSEES
T ss_pred EEEEEcCCCc-CCCcCHHHHhhCccccC--HH---H------HHHHH------------HHHhhHHHHHhcccccccccc
Confidence 5899999976 56899999998853211 00 0 00000 0001122333321 1122222
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHH---HHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQ---HLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~---~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
..+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|. +++ .|+|||+++|+.. .+ ..||+
T Consensus 123 -~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~ 197 (237)
T 2cbz_A 123 -EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDV 197 (237)
T ss_dssp -TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSE
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCE
Confidence 3456799999999999999999999999999999999999999999985 343 3789999998765 44 57999
Q ss_pred eeeecCCeEEEecCCC
Q 044411 179 IILMAEGKILYHGPRK 194 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~ 194 (363)
+++|++|++++.|+++
T Consensus 198 v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 198 IIVMSGGKISEMGSYQ 213 (237)
T ss_dssp EEEEETTEEEEEECHH
T ss_pred EEEEeCCEEEEeCCHH
Confidence 9999999999888754
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.92 E-value=4.1e-25 Score=225.10 Aligned_cols=143 Identities=21% Similarity=0.306 Sum_probs=113.2
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc----
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC---- 95 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---- 95 (363)
.++.+|||+|++.+++. ||+||+.++... ... . ++++++++.+++.+.
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~--------~----------------~~~~~~~~~~~l~~~~~~~ 466 (582)
T 3b5x_A 415 LRRHFALVSQNVHLFND-TIANNIAYAAEG---EYT--------R----------------EQIEQAARQAHAMEFIENM 466 (582)
T ss_pred HhcCeEEEcCCCccccc-cHHHHHhccCCC---CCC--------H----------------HHHHHHHHHCCCHHHHHhC
Confidence 35679999999998874 999999885310 000 0 124555666665443
Q ss_pred ---ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 96 ---ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 96 ---~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.||.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+
T Consensus 467 p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~~ 542 (582)
T 3b5x_A 467 PQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS-TI 542 (582)
T ss_pred cccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-HH
Confidence 4555554 4567999999999999999999999999999999999999999999999853 789999988764 44
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..||+|++|++|++++.|++++
T Consensus 543 -~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 543 -EQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred -HhCCEEEEEECCEEEEECCHHH
Confidence 5799999999999999988654
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=3.4e-25 Score=225.65 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=112.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc------
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI------ 94 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------ 94 (363)
++.++||+|++.+++. ||+||+.++.... .. . ++++++++.+++.+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~--------~----------------~~~~~~l~~~~l~~~~~~~p 467 (582)
T 3b60_A 416 RNQVALVSQNVHLFND-TVANNIAYARTEE---YS--------R----------------EQIEEAARMAYAMDFINKMD 467 (582)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHHTTTTSC---CC--------H----------------HHHHHHHHTTTCHHHHHHST
T ss_pred HhhCeEEccCCcCCCC-CHHHHHhccCCCC---CC--------H----------------HHHHHHHHHcCCHHHHHhcc
Confidence 5679999999998874 9999998853100 00 0 12445555555543
Q ss_pred -cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 95 -CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 95 -~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
..++.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+
T Consensus 468 ~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~~- 542 (582)
T 3b60_A 468 NGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS-TI- 542 (582)
T ss_dssp TGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG-GT-
T ss_pred ccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH-HH-
Confidence 34556654 4578999999999999999999999999999999999999999999999863 789999998764 44
Q ss_pred hhhcceeeecCCeEEEecCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~ 194 (363)
..||+|++|++|++++.|+++
T Consensus 543 ~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 543 EQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp TTCSEEEEEETTEEEEEECHH
T ss_pred HhCCEEEEEECCEEEEecCHH
Confidence 579999999999999998754
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=4.3e-25 Score=224.92 Aligned_cols=148 Identities=25% Similarity=0.272 Sum_probs=110.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++||+|++.+++. ||+||+.++.... . .+.. ....+.. .+.+.++ .+.+..++.+
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~---~-~~~~---~~~~~~~------------~~~~~i~--~l~~g~~~~~ 473 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGREDA---T-DDEI---VEAAKIA------------QIHDFII--SLPEGYDSRV 473 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCSSC---C-HHHH---HHHHHHT------------TCHHHHH--TSSSGGGCEE
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCCCC---C-HHHH---HHHHHHh------------CcHHHHH--hcccchhhHh
Confidence 5679999999998865 9999998753210 0 0000 0000000 0122222 2333456666
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
|+ ....||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++. .|+|+|+++|+.. . ...||+|+
T Consensus 474 ~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~-~-~~~~d~i~ 548 (587)
T 3qf4_A 474 ER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIP-T-ALLADKIL 548 (587)
T ss_dssp CS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH-H-HTTSSEEE
T ss_pred cC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH-H-HHhCCEEE
Confidence 64 456799999999999999999999999999999999999999999999985 3789999988764 3 46899999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 549 vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 549 VLHEGKVAGFGTHKE 563 (587)
T ss_dssp EEETTEEEEEECHHH
T ss_pred EEECCEEEEECCHHH
Confidence 999999999998653
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=4.4e-25 Score=224.61 Aligned_cols=141 Identities=25% Similarity=0.343 Sum_probs=110.6
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------Cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------LD 93 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 93 (363)
++.+|||+|++.+++. ||+||+.++.... ..+ ++.+.++..+ +.
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~----~~~------------------------~~~~~~~~~~~~~~~~~lp 464 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRPTA----TDE------------------------EVVEAAKMANAHDFIMNLP 464 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCSSC----CHH------------------------HHHHHHHHTTCHHHHHTST
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCCCC----CHH------------------------HHHHHHHHhCcHHHHHhCc
Confidence 5679999999998876 9999998853110 000 1222333333 33
Q ss_pred ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 94 ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 94 ~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
+..+|.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.++++.+ ++|+|+++|+.. .+
T Consensus 465 ~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~~- 539 (578)
T 4a82_A 465 QGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-TI- 539 (578)
T ss_dssp TGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GT-
T ss_pred chhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-HH-
Confidence 445666664 4567999999999999999999999999999999999999999999998853 689999888765 44
Q ss_pred hhhcceeeecCCeEEEecCCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..||+|++|++|++++.|++++
T Consensus 540 ~~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 540 THADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp TTCSEEEEEETTEEEEEECHHH
T ss_pred HcCCEEEEEECCEEEEECCHHH
Confidence 5699999999999999998653
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=1.5e-24 Score=221.45 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=109.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------Cc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------LD 93 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 93 (363)
++.+|||+|++.+++ .||+||+.++.... .. + ++.+.++..+ +.
T Consensus 428 r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~---~~-~------------------------~~~~~~~~~~~~~~~~~~~ 478 (598)
T 3qf4_B 428 RSSIGIVLQDTILFS-TTVKENLKYGNPGA---TD-E------------------------EIKEAAKLTHSDHFIKHLP 478 (598)
T ss_dssp HHHEEEECTTCCCCS-SBHHHHHHSSSTTC---CT-T------------------------HHHHHTTTTTCHHHHHTST
T ss_pred HhceEEEeCCCcccc-ccHHHHHhcCCCCC---CH-H------------------------HHHHHHHHhCCHHHHHhcc
Confidence 567999999998886 59999998853110 00 0 1222222222 23
Q ss_pred ccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH
Q 044411 94 ICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 94 ~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
+..++.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. .|+|+|+++|+.. .+
T Consensus 479 ~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~- 553 (598)
T 3qf4_B 479 EGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-TI- 553 (598)
T ss_dssp TGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-HH-
T ss_pred ccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-
Confidence 344555553 345799999999999999999999999999999999999999999999985 3789999998875 44
Q ss_pred hhhcceeeecCCeEEEecCCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..||+|++|++|++++.|++++
T Consensus 554 ~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 554 KNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHCSEEEEECSSSEEECSCHHH
T ss_pred HcCCEEEEEECCEEEEECCHHH
Confidence 4599999999999999998653
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=3.3e-24 Score=218.29 Aligned_cols=148 Identities=22% Similarity=0.192 Sum_probs=120.1
Q ss_pred CccccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccc
Q 044411 16 GEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDIC 95 (363)
Q Consensus 16 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 95 (363)
|.....+.+||++|+....+.+||.|++....... . .. ..+++++++.+|+.+.
T Consensus 411 G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--------~------~~------------~~~~~~~l~~~~l~~~ 464 (607)
T 3bk7_A 411 GKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSK--------L------NS------------NFYKTELLKPLGIIDL 464 (607)
T ss_dssp SCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHH--------H------HC------------HHHHHHTHHHHTCTTT
T ss_pred eEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccC--------C------CH------------HHHHHHHHHHcCCchH
Confidence 33334567999999988888899999886531100 0 00 0136778999999988
Q ss_pred ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhh
Q 044411 96 ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDL 175 (363)
Q Consensus 96 ~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~ 175 (363)
.++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+ ..++..+
T Consensus 465 ~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-~~~~~~~ 538 (607)
T 3bk7_A 465 YDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYV 538 (607)
T ss_dssp TTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHH
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHh
Confidence 887765 5999999999999999999999999999999999999999999999976568899998865 4688899
Q ss_pred hcceeeecC--CeEEEecCCCC
Q 044411 176 FDDIILMAE--GKILYHGPRKV 195 (363)
Q Consensus 176 ~D~v~vL~~--G~iv~~G~~~~ 195 (363)
||++++|++ |+++..|++++
T Consensus 539 adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 539 SDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp CSEEEEEEEETTTEEEECCCEE
T ss_pred CCEEEEEcCCcceEEecCCHHH
Confidence 999999986 78888888753
No 44
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.3e-24 Score=218.01 Aligned_cols=145 Identities=18% Similarity=0.050 Sum_probs=118.2
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
.+..++|++|+.......||.|++..... ... .. ...++++++.++|.+.+++.
T Consensus 411 ~~~~i~~~~q~~~~~~~~tv~e~~~~~~~--~~~---------~~---------------~~~~~~~l~~l~l~~~~~~~ 464 (608)
T 3j16_B 411 PKLNVSMKPQKIAPKFPGTVRQLFFKKIR--GQF---------LN---------------PQFQTDVVKPLRIDDIIDQE 464 (608)
T ss_dssp CSCCEEEECSSCCCCCCSBHHHHHHHHCS--STT---------TS---------------HHHHHHTHHHHTSTTTSSSB
T ss_pred cCCcEEEecccccccCCccHHHHHHHHhh--ccc---------cc---------------HHHHHHHHHHcCChhhhcCC
Confidence 34569999998777777899998754221 000 00 01356779999999888876
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++.|.|||+++|+ .+++..+||||
T Consensus 465 ~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrv 538 (608)
T 3j16_B 465 VQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKV 538 (608)
T ss_dssp SS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEE
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEE
Confidence 65 5999999999999999999999999999999999999999999999875568999998865 46889999999
Q ss_pred eeecC--CeEEEecCCCCC
Q 044411 180 ILMAE--GKILYHGPRKVC 196 (363)
Q Consensus 180 ~vL~~--G~iv~~G~~~~~ 196 (363)
++|++ |+++..|++++.
T Consensus 539 ivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 539 IVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp EECEEETTTEEECCCCEEH
T ss_pred EEEeCCCCeEEecCChHHH
Confidence 99986 899999988644
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=3.1e-24 Score=216.05 Aligned_cols=144 Identities=22% Similarity=0.183 Sum_probs=117.3
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccc
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTL 99 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 99 (363)
....++|++|+....+.+||.|++....... ... ..+++++++.+|+.+..++.
T Consensus 345 ~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-----------~~~---------------~~~~~~~l~~~~l~~~~~~~ 398 (538)
T 1yqt_A 345 WDLTVAYKPQYIKADYEGTVYELLSKIDASK-----------LNS---------------NFYKTELLKPLGIIDLYDRE 398 (538)
T ss_dssp CCCCEEEECSSCCCCCSSBHHHHHHHHHHHH-----------HTC---------------HHHHHHTTTTTTCGGGTTSB
T ss_pred ECceEEEEecCCcCCCCCcHHHHHHhhhccC-----------CCH---------------HHHHHHHHHHcCChhhhcCC
Confidence 3567999999988778899999876431100 000 01367788899998877777
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 100 VGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 100 vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+ ..++..+||+|
T Consensus 399 ~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-~~~~~~~~drv 472 (538)
T 1yqt_A 399 VN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRL 472 (538)
T ss_dssp GG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEE
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEE
Confidence 65 5999999999999999999999999999999999999999999999875558899998865 46888999999
Q ss_pred eeecC--CeEEEecCCCC
Q 044411 180 ILMAE--GKILYHGPRKV 195 (363)
Q Consensus 180 ~vL~~--G~iv~~G~~~~ 195 (363)
++|++ |+++..|++++
T Consensus 473 ~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 473 MVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp EEEEEETTTEEEECCCEE
T ss_pred EEEeCCcceEeecCCHHH
Confidence 99986 78888888753
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=3.5e-24 Score=199.42 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=99.4
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcc-------
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDI------- 94 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 94 (363)
..++|++|++.+++. ||+||+. +.... . . ++.+.++.+++.+
T Consensus 99 g~i~~v~Q~~~l~~~-tv~enl~-~~~~~----~-~------------------------~~~~~~~~~~l~~~l~~~~~ 147 (290)
T 2bbs_A 99 GRISFCSQNSWIMPG-TIKENII-GVSYD----E-Y------------------------RYRSVIKACQLEEDISKFAE 147 (290)
T ss_dssp SCEEEECSSCCCCSS-BHHHHHH-TTCCC----H-H------------------------HHHHHHHHTTCHHHHHTSTT
T ss_pred CEEEEEeCCCccCcc-cHHHHhh-Ccccc----h-H------------------------HHHHHHHHhChHHHHHhccc
Confidence 358999999988885 9999997 32100 0 0 0111222223222
Q ss_pred cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHH-HHHhhcCCCEEEEEecCCChHHH
Q 044411 95 CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCL-QHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 95 ~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l-~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
..++.++ ..+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.+ ++++ .|+|||+++|+. ..+
T Consensus 148 ~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~- 222 (290)
T 2bbs_A 148 KDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL- 222 (290)
T ss_dssp GGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-
T ss_pred cccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-
Confidence 1223332 234679999999999999999999999999999999999999999964 5554 378999998775 344
Q ss_pred hhhcceeeecCCeEEEecCCC
Q 044411 174 DLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 174 ~~~D~v~vL~~G~iv~~G~~~ 194 (363)
..||++++|++|++++.|+++
T Consensus 223 ~~~d~i~~l~~G~i~~~g~~~ 243 (290)
T 2bbs_A 223 KKADKILILHEGSSYFYGTFS 243 (290)
T ss_dssp HHSSEEEEEETTEEEEEECHH
T ss_pred HcCCEEEEEECCeEEEeCCHH
Confidence 569999999999999988754
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=2.3e-23 Score=209.44 Aligned_cols=142 Identities=16% Similarity=0.152 Sum_probs=113.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.+.++|++|+....+.+||.||+.+..... .. . ....++++++.+||.+..++.+
T Consensus 329 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~-------~-----------------~~~~~~~~l~~~~l~~~~~~~~ 383 (538)
T 3ozx_A 329 KQILSYKPQRIFPNYDGTVQQYLENASKDA-LS-------T-----------------SSWFFEEVTKRLNLHRLLESNV 383 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHCSST-TC-------T-----------------TSHHHHHTTTTTTGGGCTTSBG
T ss_pred CeeeEeechhcccccCCCHHHHHHHhhhhc-cc-------h-----------------hHHHHHHHHHHcCCHHHhcCCh
Confidence 457899999877777899999997642100 00 0 0013667788899988887776
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||+++|+ .+++..+||||+
T Consensus 384 ~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-l~~~~~~aDri~ 457 (538)
T 3ozx_A 384 N-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD-LSIHDYIADRII 457 (538)
T ss_dssp G-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999999987678999998865 468899999999
Q ss_pred eecC--CeEEEecCC
Q 044411 181 LMAE--GKILYHGPR 193 (363)
Q Consensus 181 vL~~--G~iv~~G~~ 193 (363)
+|++ |.....+++
T Consensus 458 vl~~~~~~~~~~~~~ 472 (538)
T 3ozx_A 458 VFKGEPEKAGLATSP 472 (538)
T ss_dssp EEEEETTTEEEECCC
T ss_pred EEeCCcceeccCCCh
Confidence 9986 444444443
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=6.6e-24 Score=233.43 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=115.5
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcC-------C
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILG-------L 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 92 (363)
.|+.++||||++.+|+ -|++|||.|+..... ... +++.++++..+ |
T Consensus 1151 lR~~i~~V~Qdp~LF~-gTIreNI~~gld~~~----------~sd----------------~ei~~Al~~a~l~~~I~~L 1203 (1321)
T 4f4c_A 1151 TRSQIAIVSQEPTLFD-CSIAENIIYGLDPSS----------VTM----------------AQVEEAARLANIHNFIAEL 1203 (1321)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHSSSSCTTT----------SCH----------------HHHHHHHHHTTCHHHHHTS
T ss_pred HHhheEEECCCCEeeC-ccHHHHHhccCCCCC----------CCH----------------HHHHHHHHHhCChHHHHcC
Confidence 5788999999999886 499999987632110 000 02344444444 4
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..||.+|+ ....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. .|+|+|+++|..+ .
T Consensus 1204 p~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs--T 1278 (1321)
T 4f4c_A 1204 PEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN--T 1278 (1321)
T ss_dssp TTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS--T
T ss_pred cCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH--H
Confidence 5667899985 456799999999999999999999999999999999999999999999875 4789999998775 4
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
...||+|+||++|+|++.|++++
T Consensus 1279 i~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1279 VMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp TTTCSEEEEESSSSEEEEECHHH
T ss_pred HHhCCEEEEEECCEEEEECCHHH
Confidence 56799999999999999998763
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=4.6e-23 Score=226.75 Aligned_cols=143 Identities=27% Similarity=0.273 Sum_probs=116.0
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-------CC
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-------GL 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL 92 (363)
.++.+|||+|++.+|+ -|++|||.|+.... ..+ ++.++++.. .|
T Consensus 490 lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~----~~~------------------------~v~~a~~~a~l~~~i~~l 540 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFN-CTIEENISLGKEGI----TRE------------------------EMVAACKMANAEKFIKTL 540 (1321)
T ss_dssp HHHHEEEECSSCCCCS-EEHHHHHHTTCTTC----CHH------------------------HHHHHHHHTTCHHHHHHS
T ss_pred HhhcccccCCcceeeC-CchhHHHhhhcccc----hHH------------------------HHHHHHHHccchhHHHcC
Confidence 3568999999988775 69999999863210 000 133333332 35
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
++..+|.+|+ ....||||||||++||||++.+|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+.+ .
T Consensus 541 p~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~ 615 (1321)
T 4f4c_A 541 PNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--T 615 (1321)
T ss_dssp TTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--T
T ss_pred CCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHH--H
Confidence 6677899996 4567999999999999999999999999999999999999999999999864 789999998875 5
Q ss_pred HhhhcceeeecCCeEEEecCCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
...||+|++|++|+|++.|+.++.
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHhCCEEEEeeCCeeeccCCHHHH
Confidence 678999999999999999998754
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=1e-22 Score=223.46 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=111.7
Q ss_pred cceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-------CC
Q 044411 20 PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-------GL 92 (363)
Q Consensus 20 ~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL 92 (363)
.++.++||||++.+++ .||+||+.++....... .+ .+.+.++.. .+
T Consensus 1105 ~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~--~~------------------------~i~~~~~~~~~~~~i~~l 1157 (1284)
T 3g5u_A 1105 LRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVS--YE------------------------EIVRAAKEANIHQFIDSL 1157 (1284)
T ss_dssp HTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCC--HH------------------------HHHHHHHHHTCHHHHSST
T ss_pred HHhceEEECCCCcccc-ccHHHHHhccCCCCCCC--HH------------------------HHHHHHHHhCcHHHHHhC
Confidence 3567999999997764 79999998753211100 00 011122222 34
Q ss_pred cccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 93 DICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 93 ~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.+..||.+|+ ....|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. .|+|+|+++|... .+
T Consensus 1158 ~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i 1233 (1284)
T 3g5u_A 1158 PDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI 1233 (1284)
T ss_dssp TTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG
T ss_pred ccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH
Confidence 5567888875 456799999999999999999999999999999999999999999998864 4789999988775 55
Q ss_pred HhhhcceeeecCCeEEEecCCCC
Q 044411 173 FDLFDDIILMAEGKILYHGPRKV 195 (363)
Q Consensus 173 ~~~~D~v~vL~~G~iv~~G~~~~ 195 (363)
..||+|++|++|++++.|++++
T Consensus 1234 -~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1234 -QNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp -GSCSEEEEEETBEEEEEECHHH
T ss_pred -HcCCEEEEEECCEEEEECCHHH
Confidence 5699999999999999998653
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=2.3e-22 Score=220.64 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=111.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+|||+|++.+++. ||+||+.++.... ..+...+ ..+.. .+.+.++. +.+..+|.+
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~----~~~~~~~---~~~~~------------~~~~~i~~--l~~g~~t~~ 520 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGREDV----TMDEIEK---AVKEA------------NAYDFIMK--LPHQFDTLV 520 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCSSC----CHHHHHH---HHHHT------------TCHHHHHH--STTGGGCCC
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCCCC----CHHHHHH---HHHHh------------CcHHHHHh--ccccccccc
Confidence 5679999999998876 9999999864210 0000000 00000 12222332 344567777
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
|+ ...+||||||||++|||||+.+|+||+||||||+||+.+...+.+.++.+. .|+|+|+++|+.. .+ ..||+|+
T Consensus 521 ~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~i-~~~d~i~ 595 (1284)
T 3g5u_A 521 GE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLS-TV-RNADVIA 595 (1284)
T ss_dssp SS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHH-HH-TTCSEEE
T ss_pred cC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEE
Confidence 74 456799999999999999999999999999999999999999999998875 3789999887653 44 5599999
Q ss_pred eecCCeEEEecCCCC
Q 044411 181 LMAEGKILYHGPRKV 195 (363)
Q Consensus 181 vL~~G~iv~~G~~~~ 195 (363)
+|++|++++.|++++
T Consensus 596 vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 596 GFDGGVIVEQGNHDE 610 (1284)
T ss_dssp ECSSSCCCCEECHHH
T ss_pred EEECCEEEEECCHHH
Confidence 999999999998764
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=2.6e-22 Score=207.66 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=90.1
Q ss_pred HHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCCc--EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 85 YNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIK--AMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 85 ~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~--lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
.+++.+||.+. .++.++ .|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|+++++ .|.||
T Consensus 184 ~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tv 257 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTL 257 (670)
T ss_dssp HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEE
Confidence 46888999764 566655 599999999999999999998 9999999999999999999999999976 48999
Q ss_pred EEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 162 LISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
|+++|+. .. ...||++++| ++|++++.|++++
T Consensus 258 i~vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 258 IVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp EEECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred EEEeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHH
Confidence 9998764 34 5579999999 8999999998764
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.85 E-value=2.4e-21 Score=197.18 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=88.1
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.||
T Consensus 208 ~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tv 281 (607)
T 3bk7_A 208 KFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAV 281 (607)
T ss_dssp CHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 47888999999988887765 5999999999999999999999999999999999999999999999986 48899
Q ss_pred EEEecCCChHHHhhhcceeeecCCe
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
|+++|+ ...+..+||+|++|++|.
T Consensus 282 IivsHd-l~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 282 LVVEHD-LAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EEECSC-HHHHHHHCSEEEEEESCT
T ss_pred EEEecC-hHHHHhhCCEEEEECCCc
Confidence 998875 457888999999998653
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=1.4e-21 Score=202.09 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=89.4
Q ss_pred HHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 83 TDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 83 v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
+.+.++.+|+.. ..+..+ ..|||||||||+|||||+.+| ++|||||||+|||+.++..++++|+++++ .|
T Consensus 523 ~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g 596 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 596 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC
Confidence 556688889864 345444 469999999999999999886 59999999999999999999999999986 48
Q ss_pred CEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 159 ATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 159 ~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
.|||+++|+. .. ...||+|++| ++|++++.|++++
T Consensus 597 ~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 597 DTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp CEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred CEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 9999998765 34 4679999999 8999999998764
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.85 E-value=3.7e-21 Score=193.69 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=88.0
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.||
T Consensus 138 ~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tv 211 (538)
T 1yqt_A 138 KLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSV 211 (538)
T ss_dssp CHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 47889999999988877765 5999999999999999999999999999999999999999999999986 48899
Q ss_pred EEEecCCChHHHhhhcceeeecCCe
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
|+++|+ ..++..+||+|++|++|.
T Consensus 212 i~vsHd-~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 212 LVVEHD-LAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp EEECSC-HHHHHHHCSEEEEEEEET
T ss_pred EEEeCC-HHHHHHhCCEEEEEcCcc
Confidence 998875 458889999999997653
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.84 E-value=5.9e-21 Score=201.36 Aligned_cols=132 Identities=19% Similarity=0.146 Sum_probs=109.6
Q ss_pred eEEEEcccc-ccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCc-ccccccc
Q 044411 23 LSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLD-ICADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~-~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 100 (363)
.++|++|+. .+++.+||.|++.+ ...+ . . .++.++++.+||. +..++.+
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~----------~----~-------------~~v~~~L~~lgL~~~~~~~~~ 546 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVG----------T----K-------------EAIKDKLIEFGFTDEMIAMPI 546 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSS----------C----H-------------HHHHHHHHHTTCCHHHHHSBG
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcC----------H----H-------------HHHHHHHHHcCCChhhhcCCc
Confidence 478999874 67889999999975 1110 0 0 1477889999995 6677766
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|+ ...+..+||+++
T Consensus 547 ~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii 616 (986)
T 2iw3_A 547 S-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYII 616 (986)
T ss_dssp G-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEE
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECC-HHHHHHhCCEEE
Confidence 5 5999999999999999999999999999999999999999999987 37899998865 468889999999
Q ss_pred eecCCeEE-EecCC
Q 044411 181 LMAEGKIL-YHGPR 193 (363)
Q Consensus 181 vL~~G~iv-~~G~~ 193 (363)
+|++|+++ +.|++
T Consensus 617 ~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 617 NYEGLKLRKYKGNF 630 (986)
T ss_dssp EEETTEEEEEESCH
T ss_pred EEECCeeecCCCCH
Confidence 99999996 56754
No 57
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=2.4e-20 Score=196.36 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=90.5
Q ss_pred hHHHHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcC
Q 044411 82 KTDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHIT 157 (363)
Q Consensus 82 ~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~ 157 (363)
++.++|+.+||... .+. .+.+|||||||||.||++|+.+| +||||||||+|||+.+...+++.|+++++ .
T Consensus 784 ~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 46778999999653 233 34569999999999999999865 79999999999999999999999999986 4
Q ss_pred CCEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCCC
Q 044411 158 DATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKVC 196 (363)
Q Consensus 158 g~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~~ 196 (363)
|.|||+++|+. +. ...||+|++| ++|++++.|++++.
T Consensus 858 G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 858 GNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp TCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 88999988765 34 4669999999 89999999998743
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.82 E-value=2.2e-20 Score=187.76 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=88.0
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+++++++.+|+.+..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ |.||
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~ti 190 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYV 190 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEE
T ss_pred HHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEE
Confidence 47888999999988887765 5999999999999999999999999999999999999999999999963 7899
Q ss_pred EEEecCCChHHHhhhcceeeecCCeE
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKI 187 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~i 187 (363)
|+++|+. .++..+||+|++|++|..
T Consensus 191 i~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 191 IVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred EEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 9988655 688999999999987643
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.7e-20 Score=186.84 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=90.6
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.||
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tv 274 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYV 274 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEE
T ss_pred HHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 58889999999998887765 5999999999999999999999999999999999999999999999976 48899
Q ss_pred EEEecCCChHHHhhhcceeeecCCeEEE
Q 044411 162 LISLLQPSPETFDLFDDIILMAEGKILY 189 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL~~G~iv~ 189 (363)
|+++|+ ..++..+||+|++|.+|..++
T Consensus 275 i~vtHd-l~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 275 ICVEHD-LSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp EEECSC-HHHHHHHCSEEEEEESCTTTE
T ss_pred EEEeCC-HHHHHHhCCEEEEEeCCcccc
Confidence 998765 468999999999998876544
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=2.2e-19 Score=188.21 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=90.7
Q ss_pred HHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 83 TDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 83 v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
+.++++.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|+++++ .|
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 566899999986 5565554 59999999999999999865 99999999999999999999999999986 58
Q ss_pred CEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 159 ATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 159 ~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
.|||+++|+. +. ...||+|++| ++|++++.|++++
T Consensus 899 ~TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 899 DTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp CEEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred CEEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence 8999988764 34 4689999999 7899999998753
No 61
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.3e-19 Score=150.40 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=70.4
Q ss_pred cCCCCChHHHHHHHHH------HHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 104 IRRGISGGQKRRLTTG------EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia------~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|+++.++ |.|||+++|+. ++..+||
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGCS
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhCC
Confidence 3457999999999886 8999999999999999999999999999999998764 78999998875 5678999
Q ss_pred ceeee--cCCe
Q 044411 178 DIILM--AEGK 186 (363)
Q Consensus 178 ~v~vL--~~G~ 186 (363)
++++| .+|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 99999 4564
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=6.7e-19 Score=184.57 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=91.0
Q ss_pred HHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 85 YNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 85 ~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+.|+.+||... .++.++ +|||||||||.||++|..+| ++|+|||||+|||+.....+++.|+++++ .|.||
T Consensus 486 ~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TV 559 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTL 559 (972)
T ss_dssp HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEE
T ss_pred HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 35889999864 566655 59999999999999999985 99999999999999999999999999975 68999
Q ss_pred EEEecCCChHHHhhhcceeee------cCCeEEEecCCCCCC
Q 044411 162 LISLLQPSPETFDLFDDIILM------AEGKILYHGPRKVCP 197 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~~~ 197 (363)
|+++|+. +. ...||+|++| ++|++++.|++++..
T Consensus 560 IvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 560 IVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9988764 34 5689999999 799999999988653
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=3.2e-19 Score=187.81 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=90.2
Q ss_pred HHHHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCCc--EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCC
Q 044411 83 TDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIK--AMFMDKITNGLDISTSFQIVTCLQHLAHITDA 159 (363)
Q Consensus 83 v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~--lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ 159 (363)
..+.|..+||... .++.++ +|||||||||.||++|+++|+ +|||||||+|||+.....++++|+++++ .|.
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~ 517 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGN 517 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTC
T ss_pred HHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCC
Confidence 4566888999754 465554 599999999999999999887 9999999999999999999999999976 489
Q ss_pred EEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 160 TILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 160 tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
|||+++|+. +. ...||+|++| ++|++++.|++++
T Consensus 518 TvivVtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 518 TVIVVEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEEEECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEEEeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 999988764 34 4569999999 8999999998763
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=3.3e-19 Score=186.34 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=92.0
Q ss_pred hHHHHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcC
Q 044411 82 KTDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGP---IKAMFMDKITNGLDISTSFQIVTCLQHLAHIT 157 (363)
Q Consensus 82 ~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~---P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~ 157 (363)
++.++++.+||... .++.+ ..|||||||||.||++|+.+ |+||||||||+|||+.+...+++.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 47788999999863 45554 46999999999999999996 799999999999999999999999999986 4
Q ss_pred CCEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 158 DATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 158 g~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
|.|||+++|+. +++ ..||+|++| ++|++++.|++++
T Consensus 783 G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 783 GNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp TCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence 88999988754 466 889999999 7999999998763
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=5e-19 Score=186.12 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=90.3
Q ss_pred HHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHHHHhCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 83 TDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGEMLVGPI---KAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 83 v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P---~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
+.++++.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 916 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KG 916 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 567899999976 5555554 59999999999999999865 99999999999999999999999999986 58
Q ss_pred CEEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCC
Q 044411 159 ATILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKV 195 (363)
Q Consensus 159 ~tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~ 195 (363)
.|||+++|+. +. ...||+|++| ++|++++.|++++
T Consensus 917 ~TVIvisHdl-~~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 917 NTVIVIEHNL-DV-IKTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp CEEEEECCCH-HH-HTTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred CEEEEEcCCH-HH-HHhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 8999988764 34 4789999999 7899999998653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.76 E-value=7e-19 Score=169.06 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=74.4
Q ss_pred cCCCCChHHHHHHHHHHHHh------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 104 IRRGISGGQKRRLTTGEMLV------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+. +....||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~--~~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR--EFSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH--HHHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCC
Confidence 45679999999999999999 79999999999999999999999999999976 589999998765 3478899
Q ss_pred ceeeecCCeEEE
Q 044411 178 DIILMAEGKILY 189 (363)
Q Consensus 178 ~v~vL~~G~iv~ 189 (363)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=1.3e-18 Score=182.87 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=88.4
Q ss_pred HHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEE
Q 044411 85 YNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGP--IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 161 (363)
Q Consensus 85 ~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~--P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ti 161 (363)
+.|..+||... .++.++ +|||||||||.||++|..+ |++|+|||||+|||+.....+++.|+++++ .|.||
T Consensus 503 ~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TV 576 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTL 576 (993)
T ss_dssp HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEE
Confidence 34788999864 566554 5999999999999999998 589999999999999999999999999976 58999
Q ss_pred EEEecCCChHHHhhhcceeee------cCCeEEEecCCC
Q 044411 162 LISLLQPSPETFDLFDDIILM------AEGKILYHGPRK 194 (363)
Q Consensus 162 i~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~ 194 (363)
|+++|.. + ....||+|++| ++|++++.|+++
T Consensus 577 IvVeHdl-~-~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 577 IVVEHDE-D-TIEHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp EEECCCH-H-HHHTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred EEECCCH-H-HHHhCCEEEEecCccccCCCEEEEeeCHH
Confidence 9988764 3 45689999999 789999999875
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.75 E-value=5.4e-19 Score=186.50 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=85.2
Q ss_pred hHHHHHHHcCCcc-c-ccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCC
Q 044411 82 KTDYNLKILGLDI-C-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDA 159 (363)
Q Consensus 82 ~v~~~l~~lgL~~-~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ 159 (363)
+++++++.+||.+ . .++.++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~ 949 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EG 949 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SS
T ss_pred HHHHHHHHcCCCchhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CC
Confidence 5888999999975 3 455554 59999999999999999999999999999999999999999988754 46
Q ss_pred EEEEEecCCChHHHhhhcceeeecCCeEEEecC
Q 044411 160 TILISLLQPSPETFDLFDDIILMAEGKILYHGP 192 (363)
Q Consensus 160 tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~G~ 192 (363)
|||+++|+ .+.+..+||++++|++|+++..|+
T Consensus 950 tVIiISHD-~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 950 GVIIITHS-AEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEEEECSC-HHHHTTTCCEEECCBTTBCCC---
T ss_pred EEEEEECC-HHHHHHhCCEEEEEECCEEEEeCC
Confidence 88888865 457888999999999999987664
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1.6e-17 Score=173.64 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=91.0
Q ss_pred HHHHHHHcCCccc-ccccccCCcCCCCChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCC
Q 044411 83 TDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDA 159 (363)
Q Consensus 83 v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~ 159 (363)
++ .+..+||... .++.+. .|||||||||.||++|..+| .+|+|||||+|||+.....++++|+++++ .|.
T Consensus 360 l~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~ 432 (842)
T 2vf7_A 360 LD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGN 432 (842)
T ss_dssp HH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTC
T ss_pred HH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCC
Confidence 44 5788999864 566554 59999999999999999999 59999999999999999999999999976 589
Q ss_pred EEEEEecCCChHHHhhhcceeee------cCCeEEEecCCCCC
Q 044411 160 TILISLLQPSPETFDLFDDIILM------AEGKILYHGPRKVC 196 (363)
Q Consensus 160 tii~~~h~~~~~~~~~~D~v~vL------~~G~iv~~G~~~~~ 196 (363)
|||+++|+. ++...||+|++| .+|++++.|+++..
T Consensus 433 TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 433 SLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp EEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred EEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 999988765 366789999999 79999999998754
No 70
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-18 Score=171.27 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=101.0
Q ss_pred cceeEEEEccccc---cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccc
Q 044411 20 PQKLSAYVSQYDL---HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICA 96 (363)
Q Consensus 20 ~~~~~~yv~Q~~~---~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 96 (363)
+++.++|+||+.. +.+.+||+||+ |+......... . .++.++++.+|+.+..
T Consensus 177 ~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~------------~------------~~~~~ll~~~gl~~~~ 231 (460)
T 2npi_A 177 PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL------------L------------HNKQPMVKNFGLERIN 231 (460)
T ss_dssp TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS------------S------------CCBCCEECCCCSSSGG
T ss_pred ccCCeeeeccchhhcccccccchhhhh-cccccccCcch------------H------------HHHHHHHHHhCCCccc
Confidence 4678999999874 44568999998 65432100000 0 0133346678887765
Q ss_pred cccccCCcCCCCChHHHHHHHHHHH--HhCCCcE----EEEeC-CCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 97 DTLVGDAIRRGISGGQKRRLTTGEM--LVGPIKA----MFMDK-ITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 97 ~~~vg~~~~~~LSGGqrqRv~ia~a--L~~~P~l----LlLDE-PtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
+ ...|||||||||+||++ |+.+|++ ||||| ||+|||+. ...+.+++++ .+.|+|+++|++.
T Consensus 232 ~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~ 299 (460)
T 2npi_A 232 E-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSET 299 (460)
T ss_dssp G-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSS
T ss_pred c-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCc
Confidence 5 24699999999999999 9999999 99999 99999999 5555555544 3678888888765
Q ss_pred h-----HHHhhhcc-----eeeec-CCeEEEecCCC
Q 044411 170 P-----ETFDLFDD-----IILMA-EGKILYHGPRK 194 (363)
Q Consensus 170 ~-----~~~~~~D~-----v~vL~-~G~iv~~G~~~ 194 (363)
+ ++..+||+ |++|+ +|+++ .|+++
T Consensus 300 ~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 300 DPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp CTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred hhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 1 56689999 99999 99998 77754
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.67 E-value=1.3e-16 Score=155.67 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee---
Q 044411 108 ISGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM--- 182 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL--- 182 (363)
|||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |.+||+++|++ ++...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~--~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLA--QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCH--HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcH--HHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999997 3 78999998875 566899999999
Q ss_pred -cCCeEEEec
Q 044411 183 -AEGKILYHG 191 (363)
Q Consensus 183 -~~G~iv~~G 191 (363)
.+|+++...
T Consensus 372 ~~~G~~~~~~ 381 (415)
T 4aby_A 372 VEDGRTVSHV 381 (415)
T ss_dssp EETTEEEEEE
T ss_pred ccCCceEEEE
Confidence 999987653
No 72
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.65 E-value=3.4e-16 Score=134.42 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 105 RRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+..||||||||++||++|+ .+|+++||||||+|||+.+...+.+.|+++++ +.++|+++|++ .+...||+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEE
Confidence 4569999999999999997 55799999999999999999999999999864 35677777764 5778999998
Q ss_pred eec--CCe
Q 044411 181 LMA--EGK 186 (363)
Q Consensus 181 vL~--~G~ 186 (363)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 553
No 73
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.60 E-value=8.7e-16 Score=146.69 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=74.4
Q ss_pred CCcCC-CCChHHHHHHHHHHHHh---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 102 DAIRR-GISGGQKRRLTTGEMLV---------GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 102 ~~~~~-~LSGGqrqRv~ia~aL~---------~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c
Confidence 33455 69999999999999999 8999999999999999999999999998763 47777766 43 3
Q ss_pred HHhhhcceeeecCCeEEEecCCCCC
Q 044411 172 TFDLFDDIILMAEGKILYHGPRKVC 196 (363)
Q Consensus 172 ~~~~~D~v~vL~~G~iv~~G~~~~~ 196 (363)
.||++++|++|+++..|++++.
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999987654
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.60 E-value=2.3e-15 Score=142.08 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce-
Q 044411 105 RRGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI- 179 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v- 179 (363)
+..||||||||++||++|+ .+|++|||||||++||+.....+.+.|++++ .|.++|+++|++ ++...||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEE
Confidence 4569999999999999997 6899999999999999999999999999985 378999988874 567899986
Q ss_pred -eeecCCeE
Q 044411 180 -ILMAEGKI 187 (363)
Q Consensus 180 -~vL~~G~i 187 (363)
++|.+|..
T Consensus 293 ~v~~~~g~s 301 (322)
T 1e69_A 293 GVTMVNGVS 301 (322)
T ss_dssp EEEESSSCE
T ss_pred EEEEeCCEE
Confidence 78888864
No 75
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.60 E-value=8e-16 Score=154.39 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=70.5
Q ss_pred cCCCC-ChHHHHHHHHHHHHhCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 104 IRRGI-SGGQKRRLTTGEMLVGPI--KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 104 ~~~~L-SGGqrqRv~ia~aL~~~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.+||+++|++ ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEE
Confidence 45667 999999999999999999 99999999999999999999999999975 78999998874 4556899999
Q ss_pred eecCCe
Q 044411 181 LMAEGK 186 (363)
Q Consensus 181 vL~~G~ 186 (363)
+|.+|.
T Consensus 469 ~~~~~~ 474 (517)
T 4ad8_A 469 KVEKQV 474 (517)
T ss_dssp EEECCE
T ss_pred EEeccc
Confidence 997663
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.60 E-value=1.4e-15 Score=144.59 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=69.3
Q ss_pred cCCCCChHHHH------HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhc
Q 044411 104 IRRGISGGQKR------RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFD 177 (363)
Q Consensus 104 ~~~~LSGGqrq------Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D 177 (363)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+. |.+||+++|++ ++...||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhCC
Confidence 45679999999 677888889999999999999999999999999999998764 77999988873 5788999
Q ss_pred ceeeec--CCe
Q 044411 178 DIILMA--EGK 186 (363)
Q Consensus 178 ~v~vL~--~G~ 186 (363)
++++|. +|.
T Consensus 322 ~~~~l~~~~g~ 332 (339)
T 3qkt_A 322 HVIRISLENGS 332 (339)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCc
Confidence 999985 454
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.52 E-value=1.2e-14 Score=125.41 Aligned_cols=77 Identities=5% Similarity=-0.004 Sum_probs=65.8
Q ss_pred CCCCChHHHHHHHHHHH-----HhCCCcEEEEeC--CCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec--CCChHHHhh
Q 044411 105 RRGISGGQKRRLTTGEM-----LVGPIKAMFMDK--ITNGLDISTSFQIVTCLQHLAHITDATILISLL--QPSPETFDL 175 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~a-----L~~~P~lLlLDE--PtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h--~~~~~~~~~ 175 (363)
+..||||||||++||++ ++.+|++++||| ||++||+.....+.+.+++ .+.|+|+++| |+...+..+
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHH
T ss_pred ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHH
Confidence 34699999999999996 999999999999 9999999999999888764 4677888887 677788888
Q ss_pred hcceeeecCCeEEE
Q 044411 176 FDDIILMAEGKILY 189 (363)
Q Consensus 176 ~D~v~vL~~G~iv~ 189 (363)
||+ .+|+++.
T Consensus 150 ~~r----~~~~i~~ 159 (178)
T 1ye8_A 150 RRL----PGAVLIE 159 (178)
T ss_dssp HTC----TTCEEEE
T ss_pred Hhc----CCcEEEE
Confidence 887 5677765
No 78
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=7.4e-14 Score=134.36 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=65.8
Q ss_pred cCCCCChHHHHHH------HHHHHHhCC-CcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 104 IRRGISGGQKRRL------TTGEMLVGP-IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 104 ~~~~LSGGqrqRv------~ia~aL~~~-P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
.+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.. +.+||+++|++ ++..+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~ 352 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVA 352 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhC
Confidence 4467999999988 557888999 999999999999999999999999998753 45888888875 467899
Q ss_pred cceeeec
Q 044411 177 DDIILMA 183 (363)
Q Consensus 177 D~v~vL~ 183 (363)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 79
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.42 E-value=2.8e-13 Score=132.77 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHHHh----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 106 RGISGGQKRRLTTGEMLV----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~----~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.. .+.++|+++|+ ......||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999999864 36788888876 367789999999
Q ss_pred ec
Q 044411 182 MA 183 (363)
Q Consensus 182 L~ 183 (363)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.39 E-value=4.8e-14 Score=120.78 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHH----------------hHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDIS----------------TSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~----------------~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
.|||||||++||++++.+|++|+|||||+|||+. ....+.+.|++++++ |.|+|+++|+.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 668899999988775 89999988764
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.35 E-value=6.3e-14 Score=123.99 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 111 GQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 111 GqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
||||||+|||||+.+|++|||||||+| ++..+++.|+++ + .|.||| ++|+..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 999999999999999999999999999 899999999988 4 478888 887653
No 82
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.29 E-value=7.8e-14 Score=135.34 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=93.4
Q ss_pred EEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccCCc
Q 044411 25 AYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGDAI 104 (363)
Q Consensus 25 ~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 104 (363)
+|++|++ .++.+|+.||+.++.. ..+++++++.+++.+.....
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------~~~~~~~L~~~~L~~~~~~~----- 153 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGST-------------------------------NFPPDTYLEKMKFYEYDFFI----- 153 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGGS-------------------------------SCCHHHHHHHTTGGGCSEEE-----
T ss_pred EEecccc-ccCCeeehHhhcccch-------------------------------HHHHHHHHHHcCCCccCCeE-----
Confidence 7899974 5788999998754310 01367788999987653221
Q ss_pred CCCCChH--HHHHHHHHHHHhC----------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh----cC----CCEEEEE
Q 044411 105 RRGISGG--QKRRLTTGEMLVG----------PIKAMFMDKITNGLDISTSFQIVTCLQHLAH----IT----DATILIS 164 (363)
Q Consensus 105 ~~~LSGG--qrqRv~ia~aL~~----------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~----~~----g~tii~~ 164 (363)
. |||| ||||+.||++|+. +|++++|||||+|||+..+.++++.|+++.. +. ..+++++
T Consensus 154 -~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliS 231 (413)
T 1tq4_A 154 -I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 231 (413)
T ss_dssp -E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECC
T ss_pred -E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 2 8999 9999999999999 9999999999999999999999999999852 22 2467777
Q ss_pred ecCCCh-HHHhhhccee-eecCCe
Q 044411 165 LLQPSP-ETFDLFDDII-LMAEGK 186 (363)
Q Consensus 165 ~h~~~~-~~~~~~D~v~-vL~~G~ 186 (363)
+|.... .+.++||++. .|.+|.
T Consensus 232 sh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 232 NKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCcCCccCHHHHHHHHHHhCccch
Confidence 765442 3889999996 565554
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.20 E-value=8.2e-12 Score=125.44 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=71.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHH-----hHHHHHHHHHHHhhcCCCEEEEEecCCC---------h
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDIS-----TSFQIVTCLQHLAHITDATILISLLQPS---------P 170 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~-----~~~~i~~~l~~l~~~~g~tii~~~h~~~---------~ 170 (363)
+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+++ .|.|+|+++|+.. .
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCc
Confidence 4569999999999999999999999999 99999999 99999999998875 5899999998761 4
Q ss_pred HHHhhhcceeeecCCe
Q 044411 171 ETFDLFDDIILMAEGK 186 (363)
Q Consensus 171 ~~~~~~D~v~vL~~G~ 186 (363)
.+..+||+|++|.+|+
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 6678999999998886
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.12 E-value=9.2e-11 Score=124.21 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=74.0
Q ss_pred CCCCChHHHHHHHHHHHH--hCCCcEEEEeCCCCCCCHHhHHHH-HHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 105 RRGISGGQKRRLTTGEML--VGPIKAMFMDKITNGLDISTSFQI-VTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL--~~~P~lLlLDEPtsGLD~~~~~~i-~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.+++|+|+++++.+|+++ +++|+++||||||+|+|+.....+ +.+++.++++.|.++|++||.+ ++..+||++..
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~ 796 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPT 796 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTT
T ss_pred HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccce
Confidence 357999999999999988 999999999999999999999888 6777888764588999998863 67789999999
Q ss_pred ecCCeEEEecCCC
Q 044411 182 MAEGKILYHGPRK 194 (363)
Q Consensus 182 L~~G~iv~~G~~~ 194 (363)
+.+|++.+.++.+
T Consensus 797 v~ng~v~~~~~~~ 809 (934)
T 3thx_A 797 VNNLHVTALTTEE 809 (934)
T ss_dssp EEEEEEEEEEETT
T ss_pred eEeeEEEEEecCC
Confidence 9999999887765
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.11 E-value=5.1e-12 Score=117.97 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=81.6
Q ss_pred eeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 22 KLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
..++|++|++. ++|.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 154 ~~i~~v~q~~~~~~~~~~v~e~l~~~~~~-~~----d--------------------------~~lldt~gl~~~~~~~~ 202 (302)
T 3b9q_A 154 TGCEIVVAEGDKAKAATVLSKAVKRGKEE-GY----D--------------------------VVLCDTSGRLHTNYSLM 202 (302)
T ss_dssp HTCEEECCC--CCCHHHHHHHHHHHHHHT-TC----S--------------------------EEEECCCCCSSCCHHHH
T ss_pred cCceEEEecCCccCHHHHHHHHHHHHHHc-CC----c--------------------------chHHhcCCCCcchhHHH
Confidence 46899999988 89999999999875321 00 0 01234567766655555
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCc--EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC--------h
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIK--AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS--------P 170 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~--lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~--------~ 170 (363)
+ +|| |||++||++|+.+|+ +|+|| ||+|||+.... +++.+..|.|+|++||.+. .
T Consensus 203 ~-----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 E-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVS 267 (302)
T ss_dssp H-----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHH
T ss_pred H-----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChhee
Confidence 4 489 999999999999999 99999 99999987552 4444445889988887432 1
Q ss_pred HHHhhhcceeeecCCeE
Q 044411 171 ETFDLFDDIILMAEGKI 187 (363)
Q Consensus 171 ~~~~~~D~v~vL~~G~i 187 (363)
.+....+.|.++..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 12233345666666643
No 86
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.06 E-value=2e-12 Score=118.82 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=66.8
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++.+++.+||.||+.|+......... ..+...++ .+..+.+.
T Consensus 46 ~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~-------------------------~~i~~~~~----~~~~~~~~ 96 (270)
T 3sop_A 46 IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW-------------------------EPIEKYIN----EQYEKFLK 96 (270)
T ss_dssp CCEEEESCC----CCEEEEECCCC--CCSBCTTCS-------------------------HHHHHHHH----HHHHHHHH
T ss_pred eeeeEEEeecCCCcCCceEEechhhhhhcccHHHH-------------------------HHHHHHHH----HHHHhhhH
Confidence 46799999999999999999999886533211000 01122221 22233333
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
..||||||||+++||+++. ++|||||+.|||+.. .+.++.+++. .++|+++|.
T Consensus 97 -----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 97 -----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp -----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred -----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 3599999999999999875 999999999999987 4455666543 677777654
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.04 E-value=1.4e-13 Score=121.44 Aligned_cols=130 Identities=8% Similarity=-0.038 Sum_probs=85.2
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHH------HHHcCCcc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYN------LKILGLDI 94 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~ 94 (363)
++.++|++|+...++.+|+.+++.......+... .......+.. .++++. ++.+|+.+
T Consensus 63 ~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~----~~g~~~~~~~------------~~~~~~~~~~~~l~~~gl~~ 126 (207)
T 1znw_A 63 VDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLH----RSGTLAQPVR------------AAAATGVPVLIEVDLAGARA 126 (207)
T ss_dssp CBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTE----EEEEEHHHHH------------HHHHHTCCEEEECCHHHHHH
T ss_pred cCCCeeEecCHHHHHHHHhcCCceeehhhcCchh----hcCCcHHHHH------------HHHHcCCeEEEEeCHHHHHH
Confidence 4568999999888888888887643221110000 0000000000 012222 33444444
Q ss_pred cccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCC----CHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 95 CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGL----DISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 95 ~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGL----D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
..+..+ +.|| +|+.+|++++|||||+|+ |+..+..+.+.+++++++.|.|+|+++|+ .+
T Consensus 127 ~~~~~~-----~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd-l~ 189 (207)
T 1znw_A 127 IKKTMP-----EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-LE 189 (207)
T ss_dssp HHHHCT-----TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS-HH
T ss_pred HHHhcC-----CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC-HH
Confidence 444333 3466 899999999999999998 78899999999999976568899998864 56
Q ss_pred HHHhhhcceeeec
Q 044411 171 ETFDLFDDIILMA 183 (363)
Q Consensus 171 ~~~~~~D~v~vL~ 183 (363)
++..+||+|++|.
T Consensus 190 ~~~~~~d~i~~l~ 202 (207)
T 1znw_A 190 SACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999985
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.00 E-value=4.4e-11 Score=113.99 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=74.5
Q ss_pred eeEEEEccccc-cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 22 KLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~-~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
..++|++|++. ++|.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 211 ~~i~~v~q~~~~~~p~~tv~e~l~~~~~~-~~----d--------------------------~~lldt~Gl~~~~~~~~ 259 (359)
T 2og2_A 211 TGCEIVVAEGDKAKAATVLSKAVKRGKEE-GY----D--------------------------VVLCDTSGRLHTNYSLM 259 (359)
T ss_dssp HTCEEECCSSSSCCHHHHHHHHHHHHHHT-TC----S--------------------------EEEEECCCCSSCCHHHH
T ss_pred cCeEEEEecccccChhhhHHHHHHHHHhC-CC----H--------------------------HHHHHhcCCChhhhhHH
Confidence 46899999988 89999999999875321 00 0 00234566666555554
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCc--EEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIK--AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~--lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
+ +|| |||++||++|+.+|+ +|+|| ||+|||+.... +.+.+..|.|+|++||.+
T Consensus 260 ~-----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD 314 (359)
T 2og2_A 260 E-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLD 314 (359)
T ss_dssp H-----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCT
T ss_pred H-----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCc
Confidence 3 589 999999999999999 99999 99999988653 344444578998888743
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.97 E-value=8.3e-10 Score=102.41 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=62.4
Q ss_pred CCChHH-HHHHHHHHHHhCCCcEEEEeCCCC---C---CCH-HhHHHHHHHHHHHhhcCCCEEEEEecCC-Ch-------
Q 044411 107 GISGGQ-KRRLTTGEMLVGPIKAMFMDKITN---G---LDI-STSFQIVTCLQHLAHITDATILISLLQP-SP------- 170 (363)
Q Consensus 107 ~LSGGq-rqRv~ia~aL~~~P~lLlLDEPts---G---LD~-~~~~~i~~~l~~l~~~~g~tii~~~h~~-~~------- 170 (363)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|++++++.|.|||+++|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 478998 66666 999999999999999999 5 555 6778899999999877789999988874 23
Q ss_pred -------------HHHhhhcceeeecCCeE
Q 044411 171 -------------ETFDLFDDIILMAEGKI 187 (363)
Q Consensus 171 -------------~~~~~~D~v~vL~~G~i 187 (363)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.90 E-value=2.4e-11 Score=113.99 Aligned_cols=126 Identities=7% Similarity=-0.059 Sum_probs=83.4
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++||+|++.+++. |+.||+.+... ++. +.. ....++.+.++.++ ....+..+
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g~------~~~----------------~d~~~~~~~L~~l~-~~~~~~~~- 174 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMHR-KGF------PES----------------YNRRALMRFVTSVK-SGSDYACA- 174 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTTC-TTS------GGG----------------BCHHHHHHHHHHHH-TTCSCEEE-
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHHh-cCC------ChH----------------HHHHHHHHHHHHhC-CCcccCCc-
Confidence 468999999999888 99999854211 110 000 00113667788777 44444444
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+..+.+|.+ .|+.......+.+|.+.
T Consensus 175 ----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V-~a~~~~~~~R~i~R~~~ 241 (312)
T 3aez_A 175 ----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYV-DARIEDIEQWYVSRFLA 241 (312)
T ss_dssp ----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEE-EECHHHHHHHHHHHHHH
T ss_pred ----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEE-ECCHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999998622 1223333445554 44433334456778777
Q ss_pred ecCCe
Q 044411 182 MAEGK 186 (363)
Q Consensus 182 L~~G~ 186 (363)
+.+|+
T Consensus 242 ~rd~~ 246 (312)
T 3aez_A 242 MRTTA 246 (312)
T ss_dssp HTTTG
T ss_pred HHhcc
Confidence 76665
No 91
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.87 E-value=4.6e-12 Score=118.07 Aligned_cols=109 Identities=10% Similarity=0.104 Sum_probs=73.2
Q ss_pred eeEEEEccccccCCCCcHHH-HHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRE-TLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
+.++|++|++.+++ .|++| |+.+.... .. .+.+.++.+ |.+..+
T Consensus 153 ~I~~~v~q~~~lf~-~ti~~~ni~~~~~~-------------~~-----------------~~~~~i~~~-L~~gld--- 197 (305)
T 2v9p_A 153 SVLSFANHKSHFWL-ASLADTRAALVDDA-------------TH-----------------ACWRYFDTY-LRNALD--- 197 (305)
T ss_dssp EEECGGGTTSGGGG-GGGTTCSCEEEEEE-------------CH-----------------HHHHHHHHT-TTGGGG---
T ss_pred eEEEEecCcccccc-ccHHHHhhccCccc-------------cH-----------------HHHHHHHHH-hHccCC---
Confidence 45778999887776 47876 77653110 00 123334443 333333
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
| ..|||||||| ||||+.+|+||| |++||+.+...+.. + +|.+ .....||+|
T Consensus 198 g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l-----------tH~~--~~~~~aD~i- 248 (305)
T 2v9p_A 198 G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L-----------HSRV--QTFRFEQPC- 248 (305)
T ss_dssp T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G-----------TTTE--EEEECCCCC-
T ss_pred c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H-----------hCCH--HHHHhCCEE-
Confidence 2 4699999999 999999999999 99999999888752 1 3333 345689999
Q ss_pred eecCCeEEEecCCC
Q 044411 181 LMAEGKILYHGPRK 194 (363)
Q Consensus 181 vL~~G~iv~~G~~~ 194 (363)
+|++|++++.|+++
T Consensus 249 vl~~G~iv~~g~~~ 262 (305)
T 2v9p_A 249 TDESGEQPFNITDA 262 (305)
T ss_dssp CCC---CCCCCCHH
T ss_pred EEeCCEEEEeCCHH
Confidence 99999999887754
No 92
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.85 E-value=2.4e-09 Score=113.19 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHH-HHHHHHhhcCCCEEEEEecCCChHHHhhhcceee-ec
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIV-TCLQHLAHITDATILISLLQPSPETFDLFDDIIL-MA 183 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~-~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v-L~ 183 (363)
..+|+|++|++.|+++ +++|+++||||||+|||+.....+. .+++.++++.|.++|++||++ ++.+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceE
Confidence 4689999999999998 8999999999999999999999987 778888655689999998864 56678887642 55
Q ss_pred CCeEEE
Q 044411 184 EGKILY 189 (363)
Q Consensus 184 ~G~iv~ 189 (363)
++++.+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555544
No 93
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.83 E-value=1.4e-09 Score=102.68 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 110 GGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 110 GGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
|||+||++||++|..+|++++|||||+ .++.+.|+.+.. ++.|+++++|.+. +...|||+++|.+|.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 899999999999999999999999998 235667777653 3557888888765 778999999998875
No 94
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.77 E-value=7.4e-09 Score=110.92 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhH-HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTS-FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~-~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
.+|+|+++ +++|++++++|+++|||||++|+|+... ..++.+++.+++..|.++|++||.+ +.+..++|++.++ +|
T Consensus 851 tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EE
T ss_pred hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cC
Confidence 46776664 9999999999999999999999999985 4478899998764488999988765 4677789999887 58
Q ss_pred eEE
Q 044411 186 KIL 188 (363)
Q Consensus 186 ~iv 188 (363)
++.
T Consensus 928 ~~~ 930 (1022)
T 2o8b_B 928 HMA 930 (1022)
T ss_dssp EEE
T ss_pred eEE
Confidence 877
No 95
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.77 E-value=5e-10 Score=109.66 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=89.7
Q ss_pred cceeEEEEccc-cccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 20 PQKLSAYVSQY-DLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 20 ~~~~~~yv~Q~-~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.++.++|++|. +..++.+||.+|+.+.+....... . ++. ...+.
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~--------------~------------~v~---------~~ld~ 255 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG--------------Q------------HVL---------LIMDS 255 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT--------------C------------EEE---------EEEEC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC--------------C------------CHH---------HHHHh
Confidence 45779999995 667888999999988654321000 0 000 00111
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh---cCCC-----EEEEEecCCCh
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH---ITDA-----TILISLLQPSP 170 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~---~~g~-----tii~~~h~~~~ 170 (363)
...+|+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ +.|. ||++++|+..
T Consensus 256 ------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 256 ------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp ------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred ------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 13489999 999999 888887 999999999999999999875 2364 7888777654
Q ss_pred HHHhhhcceeeecCCeEEEecCCC
Q 044411 171 ETFDLFDDIILMAEGKILYHGPRK 194 (363)
Q Consensus 171 ~~~~~~D~v~vL~~G~iv~~G~~~ 194 (363)
..+||++++|.+|+++..|++.
T Consensus 319 --~~iad~v~~l~dG~Ivl~~~~~ 340 (438)
T 2dpy_A 319 --DPIADSARAILDGHIVLSRRLA 340 (438)
T ss_dssp --CHHHHHHHHHSSEEEEECHHHH
T ss_pred --chhhceEEEEeCcEEEEeCCHH
Confidence 5689999999999999988764
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.75 E-value=1e-08 Score=90.79 Aligned_cols=79 Identities=10% Similarity=-0.012 Sum_probs=65.9
Q ss_pred CCChHHHHHHHHHHHHhCCCc--EEEEeCCCCCC--CHHhHHHHHHHHHHHhhcCCCEEEEEecCCC-------hHHHhh
Q 044411 107 GISGGQKRRLTTGEMLVGPIK--AMFMDKITNGL--DISTSFQIVTCLQHLAHITDATILISLLQPS-------PETFDL 175 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~--lLlLDEPtsGL--D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~-------~~~~~~ 175 (363)
..|.++.++...+.....+|+ ++++||||+++ |+.....+++.|++++++.|.|||+++|... ..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 358999988888877778999 99999999888 9999999999999998777899999887652 358889
Q ss_pred hcceeeecCC
Q 044411 176 FDDIILMAEG 185 (363)
Q Consensus 176 ~D~v~vL~~G 185 (363)
||+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 97
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.65 E-value=3e-08 Score=91.13 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=61.0
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCC--CCCHHhH---HHHHHHHHHHhhcC
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITN--GLDISTS---FQIVTCLQHLAHIT 157 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPts--GLD~~~~---~~i~~~l~~l~~~~ 157 (363)
.+.+++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|.... ..+++.|++++++.
T Consensus 99 ~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp HHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 45567778777665543 346999997765 67888999999999999 9998544 88889999987666
Q ss_pred CCEEEEEecCC
Q 044411 158 DATILISLLQP 168 (363)
Q Consensus 158 g~tii~~~h~~ 168 (363)
|+|||+++|..
T Consensus 171 g~tvi~i~H~~ 181 (279)
T 1nlf_A 171 GCSIVFLHHAS 181 (279)
T ss_dssp CCEEEEEEEC-
T ss_pred CCEEEEEecCC
Confidence 89999987654
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.64 E-value=1.4e-08 Score=105.56 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=58.4
Q ss_pred CCCChHHHHHHHHHHHH--hCCCcEEEEeCC---CCCCCHHhH-HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 106 RGISGGQKRRLTTGEML--VGPIKAMFMDKI---TNGLDISTS-FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL--~~~P~lLlLDEP---tsGLD~~~~-~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.++|+|+++++.+++++ +++|+++||||| |++||+.+. ..+++.|.+ .|.++|++||++ +...++ .
T Consensus 634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~--~ 705 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG--L 705 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC--C
T ss_pred hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh--h
Confidence 35899999999999999 999999999999 999999875 567777765 378999988764 445555 2
Q ss_pred eeecCCeEEEe
Q 044411 180 ILMAEGKILYH 190 (363)
Q Consensus 180 ~vL~~G~iv~~ 190 (363)
--+.++++...
T Consensus 706 ~~v~n~~~~~~ 716 (765)
T 1ewq_A 706 PRLKNLHVAAR 716 (765)
T ss_dssp TTEEEEEEEEE
T ss_pred hcceEEEEEEE
Confidence 23445555443
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.55 E-value=2.7e-10 Score=100.18 Aligned_cols=117 Identities=8% Similarity=-0.055 Sum_probs=85.4
Q ss_pred eEEEEccccccC--CCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 23 LSAYVSQYDLHI--PEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 23 ~~~yv~Q~~~~~--~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.++|++|++.++ +.+|+.+++.+..... ... ...++.+.++.+++.+..+.++
T Consensus 33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~---------~~~----------------~~~~~~~~l~~~~~~~~~~~~~ 87 (211)
T 3asz_A 33 RVALLPMDHYYKDLGHLPLEERLRVNYDHP---------DAF----------------DLALYLEHAQALLRGLPVEMPV 87 (211)
T ss_dssp GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG---------GGB----------------CHHHHHHHHHHHHTTCCEEECC
T ss_pred CeEEEecCccccCcccccHHHhcCCCCCCh---------hhh----------------hHHHHHHHHHHHHcCCCcCCCc
Confidence 489999998776 6789998876532100 000 0113566777887776555443
Q ss_pred cCCcCCCCChHHH----HHHHHHHHHhCCCcEEEEeCCCCC-------CCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 101 GDAIRRGISGGQK----RRLTTGEMLVGPIKAMFMDKITNG-------LDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 101 g~~~~~~LSGGqr----qRv~ia~aL~~~P~lLlLDEPtsG-------LD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
..+|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+++..++.|.|++.++|+..
T Consensus 88 -----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 88 -----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp -----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred -----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35899964 788999999999999999999999 99999999999888764445888877777643
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.49 E-value=2.2e-07 Score=81.56 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=60.2
Q ss_pred CChHH--HHHHHHHHHHhCC-CcEEEEeCCCCCCCHHh--------HHHHHHHHHHHhhcCCCEEEEEecCCCh------
Q 044411 108 ISGGQ--KRRLTTGEMLVGP-IKAMFMDKITNGLDIST--------SFQIVTCLQHLAHITDATILISLLQPSP------ 170 (363)
Q Consensus 108 LSGGq--rqRv~ia~aL~~~-P~lLlLDEPtsGLD~~~--------~~~i~~~l~~l~~~~g~tii~~~h~~~~------ 170 (363)
.|+++ ++++..+++++.+ |+++++||||+++|+.. ...+++.|++++++.+.++|+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 55654 5678888899986 99999999999999743 3456667888887668899988765431
Q ss_pred ------HHHhhhcceeeecCC
Q 044411 171 ------ETFDLFDDIILMAEG 185 (363)
Q Consensus 171 ------~~~~~~D~v~vL~~G 185 (363)
.+...||.+++|++.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.47 E-value=1.6e-07 Score=84.18 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCCCCCCC-----HHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH---------Hh
Q 044411 109 SGGQKRRLTTGEMLVGPIKAMFMDKITNGLD-----ISTSFQIVTCLQHLAHITDATILISLLQPSPET---------FD 174 (363)
Q Consensus 109 SGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD-----~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~---------~~ 174 (363)
+.++......+..-..+|+++++||||++|| +..+..+.++++.+++ .|+|||+++|... ++ ..
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~i~~ 196 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYGIEE 196 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC-CCcccccccChhh
Confidence 3445444444444568999999999999997 6666668899998876 4899999887654 55 57
Q ss_pred hh-cceeeec
Q 044411 175 LF-DDIILMA 183 (363)
Q Consensus 175 ~~-D~v~vL~ 183 (363)
+| |+|++|+
T Consensus 197 ~~aD~vi~l~ 206 (251)
T 2ehv_A 197 FIARGVIVLD 206 (251)
T ss_dssp GGCSEEEEEE
T ss_pred EeeeEEEEEe
Confidence 88 9999995
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.41 E-value=5.2e-08 Score=87.78 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=73.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|++ +++.+|+.|++.+......... .... ...++.+.++.+ .+..+..+
T Consensus 58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~----~~~~----------------~~~~~~~~L~~l--~~~~~~~~ 114 (245)
T 2jeo_A 58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDH----PDAF----------------DNDLMHRTLKNI--VEGKTVEV 114 (245)
T ss_dssp GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTS----GGGB----------------CHHHHHHHHHHH--HTTCCEEE
T ss_pred CCceEEEeCCc-CccccCHhHhhhhhccCCCCCC----cccc----------------cHHHHHHHHHHH--HCCCCeec
Confidence 56789999985 7888999999876532211000 0000 001233344433 33334333
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHH-hhhcce
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETF-DLFDDI 179 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~-~~~D~v 179 (363)
..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+|++++|... .+. .+++++
T Consensus 115 -----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~-~~~r~~~r~~ 176 (245)
T 2jeo_A 115 -----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDV-RLSRRVLRDV 176 (245)
T ss_dssp -----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHH-HHHHHHHHHT
T ss_pred -----ccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHH-HHHHHHHHHH
Confidence 4699999999988 5888999999999998888753 2222 3678888886533 333 334434
Q ss_pred eeecCCe
Q 044411 180 ILMAEGK 186 (363)
Q Consensus 180 ~vL~~G~ 186 (363)
.+|+
T Consensus 177 ---~~G~ 180 (245)
T 2jeo_A 177 ---RRGR 180 (245)
T ss_dssp ---C---
T ss_pred ---HcCC
Confidence 5553
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.37 E-value=3.3e-07 Score=95.86 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=64.4
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHH-HHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQI-VTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i-~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
.+|+|+++ +..+...+++|+++|||||++|+|+.....+ +.+++.+++..|.++|++||++ ++..+||++..+.+|
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence 46666654 4445557899999999999999999887776 6788888764588999998875 455799999888899
Q ss_pred eEEEecC
Q 044411 186 KILYHGP 192 (363)
Q Consensus 186 ~iv~~G~ 192 (363)
++.+...
T Consensus 746 ~~~~~~~ 752 (800)
T 1wb9_A 746 HLDALEH 752 (800)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 8876543
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.34 E-value=3.2e-07 Score=87.17 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHh-------CCCcEEEEeCCCCCCCHHh------------HHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 109 SGGQKRRLTTGEMLV-------GPIKAMFMDKITNGLDIST------------SFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 109 SGGqrqRv~ia~aL~-------~~P~lLlLDEPtsGLD~~~------------~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
|++++|++.++++++ .+|+++++||||+++|+.. ...++..|++++++.+.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999998 7899999999999999862 466777788888777899999876543
Q ss_pred hHHHhhhcceeeecCCeEEEec
Q 044411 170 PETFDLFDDIILMAEGKILYHG 191 (363)
Q Consensus 170 ~~~~~~~D~v~vL~~G~iv~~G 191 (363)
.....++.......|+++.++
T Consensus 288 -~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 288 -RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp ---------------CCCCCTT
T ss_pred -ccccccCCccccCCcceEeec
Confidence 444444555566666655443
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.33 E-value=2.3e-07 Score=81.94 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=55.0
Q ss_pred CChHHHH-HHHHHHHHhC-------CCcEEEEeCCCCCCCHHh------------HHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 108 ISGGQKR-RLTTGEMLVG-------PIKAMFMDKITNGLDIST------------SFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 108 LSGGqrq-Rv~ia~aL~~-------~P~lLlLDEPtsGLD~~~------------~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
.++++++ .+..+.+++. +|+++++||||+++|+.. ...+++.|++++++.|.|||+++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4555444 3566665555 999999999999999842 2378888888877678999998874
Q ss_pred CC---hHHHhhhcceeeecCC
Q 044411 168 PS---PETFDLFDDIILMAEG 185 (363)
Q Consensus 168 ~~---~~~~~~~D~v~vL~~G 185 (363)
.. ..+...+|++++|++|
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 32 1377889999999875
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.32 E-value=1e-07 Score=95.49 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCCcEEEEeCCCC-----CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH--------HHhhhcceeeecC
Q 044411 124 GPIKAMFMDKITN-----GLDISTSFQIVTCLQHLAHITDATILISLLQPSPE--------TFDLFDDIILMAE 184 (363)
Q Consensus 124 ~~P~lLlLDEPts-----GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~--------~~~~~D~v~vL~~ 184 (363)
.+|++++|||||+ +||+..+..+.++++.+++ .|.|||+++|..... +..+||+|++|++
T Consensus 137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 4588999999997 5699999999999999986 489999999877532 3556999999988
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.30 E-value=3.1e-08 Score=100.97 Aligned_cols=121 Identities=10% Similarity=0.067 Sum_probs=73.3
Q ss_pred ccceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccc
Q 044411 19 VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADT 98 (363)
Q Consensus 19 ~~~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 98 (363)
.+++.++|++|+..+++.+||+||+.++....+...
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------------------------------------- 129 (608)
T 3szr_A 94 KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------------------------------------- 129 (608)
T ss_dssp CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS--------------------------------------------
T ss_pred cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc--------------------------------------------
Confidence 356789999999999999999999987643211000
Q ss_pred cccCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCC------CCCCCHHhHHHHHHHHHHHhhcC-CCEEEEEecCCC--
Q 044411 99 LVGDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKI------TNGLDISTSFQIVTCLQHLAHIT-DATILISLLQPS-- 169 (363)
Q Consensus 99 ~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEP------tsGLD~~~~~~i~~~l~~l~~~~-g~tii~~~h~~~-- 169 (363)
.++| ++++.++.+....|+++|+||| |+|||+.....+.++++++.++. +.++++++|...
T Consensus 130 -------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 130 -------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp -------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred -------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 0001 0111122222358999999999 99999999999999999965433 445555554432
Q ss_pred -hHHHhhhc--------ceeeecCCeEEEecCC
Q 044411 170 -PETFDLFD--------DIILMAEGKILYHGPR 193 (363)
Q Consensus 170 -~~~~~~~D--------~v~vL~~G~iv~~G~~ 193 (363)
..+..+++ .|+|+.++.++..|+.
T Consensus 200 ~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 200 TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 232 (608)
T ss_dssp TCHHHHHHHHHCSSCCSEEEEEECGGGSSSSST
T ss_pred cHHHHHHHHHHhhcCCceEEEecchhhcCcccH
Confidence 12233332 3567777776665654
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.29 E-value=9.1e-08 Score=90.78 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh-cCCC-----EEEEEecCCChHHHhhhcc
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH-ITDA-----TILISLLQPSPETFDLFDD 178 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~-~~g~-----tii~~~h~~~~~~~~~~D~ 178 (363)
+..+|+|| |||++| +.+|++ |+|||+.....+.++++++.+ +.|. ||++++|+.. ..+||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 34689999 899999 578776 999999999999999999875 4466 7777776544 568999
Q ss_pred eeeecCCeEEEecCCCC
Q 044411 179 IILMAEGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~~G~iv~~G~~~~ 195 (363)
++++.+|+++.+|+..+
T Consensus 236 v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 236 VRSILDGHIVLTRELAE 252 (347)
T ss_dssp HHHHCSEEEEBCHHHHT
T ss_pred eEEeeCcEEEEeCCHHH
Confidence 99999999999987653
No 109
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.26 E-value=6.1e-09 Score=92.42 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCChHHHHHHHH-----HHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhc------CCCEEEEEecCCChHHHhh
Q 044411 107 GISGGQKRRLTT-----GEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI------TDATILISLLQPSPETFDL 175 (363)
Q Consensus 107 ~LSGGqrqRv~i-----a~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~------~g~tii~~~h~~~~~~~~~ 175 (363)
.|||||+||++| +++++.+|++++|||||+++|..+...|.+.+.++.++ .....|+++| +.++++..
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~~~ea~~~ 200 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIIND-DLTLTYQQ 200 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECS-SHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECC-CHHHHHHH
Confidence 589999999999 88999999999999999999999999998888776432 2345555554 45577777
Q ss_pred hcceeee
Q 044411 176 FDDIILM 182 (363)
Q Consensus 176 ~D~v~vL 182 (363)
+++++.-
T Consensus 201 ~~~ii~~ 207 (218)
T 1z6g_A 201 LKNYLLN 207 (218)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.16 E-value=9.3e-08 Score=89.08 Aligned_cols=104 Identities=10% Similarity=-0.029 Sum_probs=67.3
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|+....|.+||+|++.++... +.. . .+++..|+.+..+..
T Consensus 156 ~~i~~v~q~~~~~p~~~v~~~v~~~~~~-~~d----~--------------------------~llDt~G~~~~~~~~-- 202 (304)
T 1rj9_A 156 LSIPVIQGPEGTDSAALAYDAVQAMKAR-GYD----L--------------------------LFVDTAGRLHTKHNL-- 202 (304)
T ss_dssp HTCCEECCCTTCCHHHHHHHHHHHHHHH-TCS----E--------------------------EEECCCCCCTTCHHH--
T ss_pred cCceEEEeCCCCCHHHHHHHHHHHHHhC-CCC----E--------------------------EEecCCCCCCchHHH--
Confidence 4589999999999999999999765311 000 0 011223333222211
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
++..++||++|||+++.+|+.++| +||+.+...+++.++.+.+..|.|+|++||.+.
T Consensus 203 ------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 203 ------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp ------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred ------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 355568999999999999994444 455555556666677766555789888888653
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.15 E-value=5.4e-08 Score=90.63 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=60.9
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|.+.....+||.|+..++..... ..+ ... .++.+.+ ..+.
T Consensus 63 ~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~-~e~---~~~--------------------l~~~l~~------~~~~--- 109 (301)
T 2qnr_A 63 EASTVEIEERGVKLRLTVVDTPGYGDAINC-RDC---FKT--------------------IISYIDE------QFER--- 109 (301)
T ss_dssp --CEEEEC---CCEEEEEEEEC---------------CTT--------------------HHHHHHH------HHHH---
T ss_pred eeEEEEecCCCcccCcchhhhhhhhhhcCc-HHH---HHH--------------------HHHHHHH------HHHH---
Confidence 457899998888889999999877532210 000 000 0111111 1122
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITN-GLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPts-GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
+.+++|||||||+.+||+++ ++++||||+ |||+... +.++++....+.++|++.|+..
T Consensus 110 --~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 --YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp --HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred --HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 23459999999999988875 999999998 5999873 5566665444667777766543
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=1.6e-07 Score=81.36 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHH-HH---HHhCCCcEEEEeC--CCCCCCHHhHHHHHHHHHHHhhcCCCEEEE---EecCCChHHHhhh
Q 044411 106 RGISGGQKRRLTT-GE---MLVGPIKAMFMDK--ITNGLDISTSFQIVTCLQHLAHITDATILI---SLLQPSPETFDLF 176 (363)
Q Consensus 106 ~~LSGGqrqRv~i-a~---aL~~~P~lLlLDE--PtsGLD~~~~~~i~~~l~~l~~~~g~tii~---~~h~~~~~~~~~~ 176 (363)
..+|||||+++.. ++ |++.+|+++|||| |+..+|......+.++++ . ..++|+ +++|..+ ..+.
T Consensus 82 ~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~v 154 (189)
T 2i3b_A 82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALV 154 (189)
T ss_dssp ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTH
T ss_pred EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHH
Confidence 4599999998844 44 5899999999999 899999876666655554 2 334443 3323332 3578
Q ss_pred cceeeecCCeEEEe
Q 044411 177 DDIILMAEGKILYH 190 (363)
Q Consensus 177 D~v~vL~~G~iv~~ 190 (363)
|+|..+.+|+++..
T Consensus 155 d~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 155 EEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHHTTCCSEEEEC
T ss_pred HHHeecCCcEEEEe
Confidence 99999999998864
No 113
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.14 E-value=2.1e-06 Score=78.17 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 115 RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 115 Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
|++||++|..+|+++++|||| |+.+...++ +. +. .|.+|++++|... +...||+++.|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 988866543 33 33 4889999888754 6788999998864
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.92 E-value=7.9e-06 Score=77.65 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=46.1
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 117 TTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
+||++|.++|+++++|||| |..+... +.+.+. .|.++++++|... .+ ..+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~----~~~~~~-~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRL----ALTAAE-TGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHH----HHHHHH-TTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHH----HHHHHh-cCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 9999999999999999999 6555443 334444 4889999887765 44 789999999654
No 115
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.83 E-value=1.2e-05 Score=69.80 Aligned_cols=72 Identities=8% Similarity=-0.100 Sum_probs=54.3
Q ss_pred HHHHHHHcCCccc-ccccccCCcCCCCChHHHHH-HHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE
Q 044411 83 TDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRR-LTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 160 (363)
Q Consensus 83 v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGqrqR-v~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t 160 (363)
+...++..++... ..+++ ..+|+||+|| +..+++++.+|.++++|||||++|.....++++.|.++..+ +.+
T Consensus 129 ~~~~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 129 MIEWAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 4445556666542 13333 3589999999 89999999999999999999999999999999999988654 433
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=2.4e-05 Score=66.51 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=41.5
Q ss_pred HhCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH
Q 044411 122 LVGPIKAMFMDKITN-GLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 171 (363)
Q Consensus 122 L~~~P~lLlLDEPts-GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~ 171 (363)
.+.+|++|+||||++ ++|+.....+.+++....+ .|+++|+++|++..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 345899999999985 9999999999999988764 478999999887654
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.71 E-value=2.5e-06 Score=82.80 Aligned_cols=98 Identities=8% Similarity=0.032 Sum_probs=55.3
Q ss_pred eeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCccccccccc
Q 044411 22 KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVG 101 (363)
Q Consensus 22 ~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 101 (363)
+.++|++|.+.+++.+||.||+.++...... ..+ ..+.+.++
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~----~~~---------------------~~i~~~i~------------- 116 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS----NCW---------------------QPVIDYID------------- 116 (418)
T ss_dssp EEEECC------CEEEEEEECC---------------C---------------------HHHHHHHH-------------
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccch----hhH---------------------HHHHHHHH-------------
Confidence 5689999999888999999999875422100 000 00111111
Q ss_pred CCcCCCCChHHHHHHHHHHHHhCCCc---EEEEeCCC-CCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 102 DAIRRGISGGQKRRLTTGEMLVGPIK---AMFMDKIT-NGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 102 ~~~~~~LSGGqrqRv~ia~aL~~~P~---lLlLDEPt-sGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
..++.+++||++||++++.+|+ +|++|||| .|||+... .+++.+.. +.++|++++.
T Consensus 117 ----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 117 ----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp ----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred ----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 1267788899999999999999 99999999 69998873 44555543 5666666654
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=6.3e-05 Score=66.63 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=49.4
Q ss_pred CChHHHHH-HHHHHHHh--CCCcEEEEeCCCCCCCHH-------h-----HHHHHHHHHHHhhcCCCEEEEEecCCChHH
Q 044411 108 ISGGQKRR-LTTGEMLV--GPIKAMFMDKITNGLDIS-------T-----SFQIVTCLQHLAHITDATILISLLQPSPET 172 (363)
Q Consensus 108 LSGGqrqR-v~ia~aL~--~~P~lLlLDEPtsGLD~~-------~-----~~~i~~~l~~l~~~~g~tii~~~h~~~~~~ 172 (363)
.++.+... +.-+..++ .+|+++++|||++.+|+. . ...++..|++++++.|.|||+++|... +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~ 177 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QV 177 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cC
Confidence 56655443 23233333 689999999999999985 3 455777777777767899998876432 22
Q ss_pred H-------------------hhhcceeeecCC
Q 044411 173 F-------------------DLFDDIILMAEG 185 (363)
Q Consensus 173 ~-------------------~~~D~v~vL~~G 185 (363)
. .+||.+++|++|
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------------------CCTTCEEEEEEEC
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 278999999865
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.62 E-value=5.3e-06 Score=76.61 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHh
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDIST 142 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~ 142 (363)
...+||||+||+.+|++...+|+|+|+|||++|+|+..
T Consensus 132 ~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 132 DKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred ccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 36799999999999733222899999999999999864
No 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.49 E-value=8.5e-07 Score=76.21 Aligned_cols=81 Identities=5% Similarity=-0.072 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHH------HHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeee
Q 044411 109 SGGQKRRLTTGE------MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILM 182 (363)
Q Consensus 109 SGGqrqRv~ia~------aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL 182 (363)
|+|+++++.++. +++.+|+...+|+ |||+..... ++.++.+.. .+.++|.++|...+++.++||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--
Confidence 889998888877 8888898888884 899988888 888888754 467888887652458899999999
Q ss_pred cCCeEEEecCCCCC
Q 044411 183 AEGKILYHGPRKVC 196 (363)
Q Consensus 183 ~~G~iv~~G~~~~~ 196 (363)
++|+++..|++++.
T Consensus 169 ~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 169 TNPRFIFCMAGDPL 182 (189)
T ss_dssp HCGGGSCC------
T ss_pred hCCcEEEeecCCch
Confidence 99999999988754
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.29 E-value=3e-05 Score=73.87 Aligned_cols=76 Identities=13% Similarity=-0.045 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHHHHh-CCCcEEEEeC---CC------CCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhh
Q 044411 107 GISGGQKRRLTTGEMLV-GPIKAMFMDK---IT------NGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLF 176 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~-~~P~lLlLDE---Pt------sGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~ 176 (363)
.+|+|++++..+++++. .+|+++|||| |+ .++|+..+..+.+.|+++.++.+.++++++ ++. +..+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~~-~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SPS-YLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CSS-HHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CCC-HHHHHH
Confidence 36777888888887764 6999999999 65 589999999999999887654577888776 453 677889
Q ss_pred cceeeecC
Q 044411 177 DDIILMAE 184 (363)
Q Consensus 177 D~v~vL~~ 184 (363)
+++.++++
T Consensus 336 ~~i~~i~~ 343 (365)
T 1lw7_A 336 QVKAVIEK 343 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888865
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.00031 Score=58.02 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=37.8
Q ss_pred HHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE-EEEEecCCChHH
Q 044411 121 MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT-ILISLLQPSPET 172 (363)
Q Consensus 121 aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t-ii~~~h~~~~~~ 172 (363)
+++.+|++|++|||++ ++...+..+.+++..+.+. |++ +|+++|.+..+.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHHc
Confidence 4567899999999998 6655588899999988764 666 777777554333
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.00064 Score=65.41 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=47.1
Q ss_pred CCCcEEEEeCCCCCCCHHhH------------HHHHHHHHHHhhcCCCEEEEEecCCC------------------hHHH
Q 044411 124 GPIKAMFMDKITNGLDISTS------------FQIVTCLQHLAHITDATILISLLQPS------------------PETF 173 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~------------~~i~~~l~~l~~~~g~tii~~~h~~~------------------~~~~ 173 (363)
.+|+++++|||++.+|+... ..+++.|++++++.|.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997543 67888999998878999999987611 2346
Q ss_pred hhhcceeeecCC
Q 044411 174 DLFDDIILMAEG 185 (363)
Q Consensus 174 ~~~D~v~vL~~G 185 (363)
..+|.+++|.+|
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 678999988765
No 124
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=2.9e-05 Score=65.90 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=46.3
Q ss_pred HHHHHHH-cCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEE-------EEeCCCCC---CCHHhHHHHHHHHH
Q 044411 83 TDYNLKI-LGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAM-------FMDKITNG---LDISTSFQIVTCLQ 151 (363)
Q Consensus 83 v~~~l~~-lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lL-------lLDEPtsG---LD~~~~~~i~~~l~ 151 (363)
+++.++. +. ..|+.+++ +|||||+||++|||+++.+|++. .-|.|..+ +|......+.+.+.
T Consensus 85 l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~ 157 (171)
T 2f1r_A 85 LDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFIL 157 (171)
T ss_dssp HHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHH
T ss_pred HHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHH
Confidence 4455555 43 46788876 59999999999999999999873 23444322 33455677777776
Q ss_pred HHhhcCC
Q 044411 152 HLAHITD 158 (363)
Q Consensus 152 ~l~~~~g 158 (363)
+...++|
T Consensus 158 ~~~~~~~ 164 (171)
T 2f1r_A 158 SLLREGG 164 (171)
T ss_dssp HHHTC--
T ss_pred HHHhccC
Confidence 6666544
No 125
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.00 E-value=0.0018 Score=63.41 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHh--CCCcEEEEeCCCCCCCH--------HhHHHHHHHHHHHhhcCCCEEEEEecC---------
Q 044411 107 GISGGQKRRLTTGEMLV--GPIKAMFMDKITNGLDI--------STSFQIVTCLQHLAHITDATILISLLQ--------- 167 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~--~~P~lLlLDEPtsGLD~--------~~~~~i~~~l~~l~~~~g~tii~~~h~--------- 167 (363)
++|+++.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.++++.+.+||+++|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 58999987 5566665 68999999999987742 344678888999988789999988761
Q ss_pred --CC-------hHHHhhhcceeeecCCeE
Q 044411 168 --PS-------PETFDLFDDIILMAEGKI 187 (363)
Q Consensus 168 --~~-------~~~~~~~D~v~vL~~G~i 187 (363)
|. ..+...||.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987754
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00072 Score=63.42 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=37.4
Q ss_pred HhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 122 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 122 L~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
+..+|+++++|||++ ||+.+...+.+.+.+.. .+.++|+++|++..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 677999999999999 99999999999999864 36788888887653
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.00097 Score=63.57 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeec
Q 044411 115 RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMA 183 (363)
Q Consensus 115 Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~ 183 (363)
+.+|+++|..+|+++++|||+ |+.+... .++. +. .|.+++.++|.. .+...+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 579999999999999999999 7765443 3443 33 477888777664 4778899987764
No 128
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.83 E-value=0.00032 Score=67.93 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=55.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
..||+|++|++.+|++|+..|.++++ +++|+... ..++.+++..+..+.+++.++.+....+.++++.+.-
T Consensus 251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 45999999999999999999999999 99999877 5555555544445777777665555677778877654
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0039 Score=54.87 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=46.2
Q ss_pred CCCcEEEEeCCCCCC--CHHhHHHHHHHHHHHhhcCCCEEEEEecCCChH-------HHhhhcceeeecC
Q 044411 124 GPIKAMFMDKITNGL--DISTSFQIVTCLQHLAHITDATILISLLQPSPE-------TFDLFDDIILMAE 184 (363)
Q Consensus 124 ~~P~lLlLDEPtsGL--D~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~-------~~~~~D~v~vL~~ 184 (363)
.+|+++++|+|++.+ |+.....++..+.+++++.|.||++++|..... +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665566777777777766789999987765421 4678899999864
No 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.21 E-value=0.0003 Score=62.79 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=38.4
Q ss_pred CCCChHHHHHHHHHHHH-hCCCcEEEEe----CCCCCCCHHhHHHHHHHHHHHhhc
Q 044411 106 RGISGGQKRRLTTGEML-VGPIKAMFMD----KITNGLDISTSFQIVTCLQHLAHI 156 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL-~~~P~lLlLD----EPtsGLD~~~~~~i~~~l~~l~~~ 156 (363)
..||| |+ +++ +.+|++++|| |||+|||+.+...+.+.++++.++
T Consensus 151 ~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 151 HPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp ETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 45898 55 677 9999999999 999999999999999999888653
No 131
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.09 E-value=0.00062 Score=63.46 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
++|+||+||+..+++++++|+++ ||| ..+.+.|+++. .+.+|++++|.+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 48999999998888888888877 888 77888888875 4789999888754
No 132
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.05 E-value=0.013 Score=55.25 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCC--CcEEEEeCCCCCC----------CH---HhHHHHHHHHHHH---hhcCCCEEEEEecCCCh-----
Q 044411 114 RRLTTGEMLVGP--IKAMFMDKITNGL----------DI---STSFQIVTCLQHL---AHITDATILISLLQPSP----- 170 (363)
Q Consensus 114 qRv~ia~aL~~~--P~lLlLDEPtsGL----------D~---~~~~~i~~~l~~l---~~~~g~tii~~~h~~~~----- 170 (363)
+-+.++++++.. |+++++|||++.+ |+ ..++.+.+.++++ +++.+.+||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678878754 9999999999998 33 2222344444444 45568899988764321
Q ss_pred ----------HHHhhhcceeeecCCeEEEecC
Q 044411 171 ----------ETFDLFDDIILMAEGKILYHGP 192 (363)
Q Consensus 171 ----------~~~~~~D~v~vL~~G~iv~~G~ 192 (363)
.+..+||.++.+.++++...|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2456889888888776654443
No 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.63 E-value=0.0022 Score=62.03 Aligned_cols=125 Identities=11% Similarity=0.009 Sum_probs=74.3
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHc-CCcc----c
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKIL-GLDI----C 95 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~----~ 95 (363)
++.++|++|++.+++.+||.||+.|+..... ...+....... ..+.+..+... ++.. .
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~----~~~~~~i~~~i-------------~~q~~~~L~e~~~i~r~l~~~ 143 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINK----EDSYKPIVEFI-------------DAQFEAYLQEELKIRRVLHTY 143 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCH----HHHSHHHHHHH-------------HHHHHHHHHHC--CCCCCCCS
T ss_pred EeeEEEEeecCccccccchhhhhhhhhcccc----chhhhHHHHHH-------------HHHHHHHHHHHHhhhhhhccc
Confidence 4579999999999999999999977542110 00000000000 01234444443 4431 1
Q ss_pred cccc----cc--CCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHH-HhhcCCCEEEEEec
Q 044411 96 ADTL----VG--DAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH-LAHITDATILISLL 166 (363)
Q Consensus 96 ~~~~----vg--~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~-l~~~~g~tii~~~h 166 (363)
.|+. +. .+..++|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +.. .|..|+.++.
T Consensus 144 ~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~is~ 217 (427)
T 2qag_B 144 HDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQFPT 217 (427)
T ss_dssp CC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCCCC-
T ss_pred ccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEecCC
Confidence 2222 10 01113566665 7899999999999999999999999999999998886 654 5888776653
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.56 E-value=0.008 Score=62.73 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=58.1
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 105 RRGISGGQKRRLTTGEMLVGPIKAMFMDKITN-GLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPts-GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+|++|..++...+.++++...+
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~~v 264 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDAPL 264 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSCCE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCCCc
Confidence 34479999999999999999999999999996 9998877777776665543 3567777644566677777775433
No 135
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.88 E-value=0.039 Score=54.13 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=51.4
Q ss_pred CCCCChHHHHHHHHHHHHh--C---------------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 105 RRGISGGQKRRLTTGEMLV--G---------------PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 105 ~~~LSGGqrqRv~ia~aL~--~---------------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
.+++||||+|-.-+|++.. . .-++++|||. +-+|.......+++++++ |.=+|+++
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiat-- 449 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAA-- 449 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEE--
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEEC--
Confidence 4579999999765554332 1 2258999999 999999999999999876 44455553
Q ss_pred CChHHHhhhcceeeec
Q 044411 168 PSPETFDLFDDIILMA 183 (363)
Q Consensus 168 ~~~~~~~~~D~v~vL~ 183 (363)
|. .+....|.++.+-
T Consensus 450 P~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE-NISPERGTTYKLV 464 (483)
T ss_dssp SS-SCCCSSSEEEECC
T ss_pred cc-hhhhccCceEEEE
Confidence 44 4556677777664
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.87 E-value=0.014 Score=54.54 Aligned_cols=95 Identities=9% Similarity=0.060 Sum_probs=56.7
Q ss_pred EEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccccCC
Q 044411 24 SAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLVGDA 103 (363)
Q Consensus 24 ~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 103 (363)
+.|++|...+.|.+||+||+.++..... +.. +++..|+.+..+...
T Consensus 185 v~~v~q~~~~~p~~~v~e~l~~~~~~~~-----d~v--------------------------liDtaG~~~~~~~l~--- 230 (328)
T 3e70_C 185 VKVIKHSYGADPAAVAYDAIQHAKARGI-----DVV--------------------------LIDTAGRSETNRNLM--- 230 (328)
T ss_dssp CEEECCCTTCCHHHHHHHHHHHHHHHTC-----SEE--------------------------EEEECCSCCTTTCHH---
T ss_pred ceEEeccccCCHHHHHHHHHHHHHhccc-----hhh--------------------------HHhhccchhHHHHHH---
Confidence 5589999999999999999987532110 000 011122222111111
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 104 IRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 104 ~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
..|| .+++++..++.+++||.+| | ..+++.++.+.+..+.++|++||-+
T Consensus 231 --~eL~-------~i~ral~~de~llvLDa~t-~------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 231 --DEMK-------KIARVTKPNLVIFVGDALA-G------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --HHHH-------HHHHHHCCSEEEEEEEGGG-T------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHH-------HHHHHhcCCCCEEEEecHH-H------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 1233 3888888888888888544 4 3555556666655688888888754
No 137
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.83 E-value=0.084 Score=51.76 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCCC----------CCCCHHhHHHHHHHHHHHh---hcCCCEEEEEecCC
Q 044411 109 SGGQKRRLTTGEMLVGPIKAMFMDKIT----------NGLDISTSFQIVTCLQHLA---HITDATILISLLQP 168 (363)
Q Consensus 109 SGGqrqRv~ia~aL~~~P~lLlLDEPt----------sGLD~~~~~~i~~~l~~l~---~~~g~tii~~~h~~ 168 (363)
.|+++.|..++++....|.+||+||+. .|.|......+.+++..+- ...+..||.++|.+
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 367888999999999999999999993 4667666555656665542 23356777777665
No 138
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.81 E-value=0.0049 Score=61.01 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHcCCcccccc--cccCCcCCCCChHHHHHH----------HHHHHHhCCCc-EEEEeCCCCCCCHHhHHHHHHHHH
Q 044411 85 YNLKILGLDICADT--LVGDAIRRGISGGQKRRL----------TTGEMLVGPIK-AMFMDKITNGLDISTSFQIVTCLQ 151 (363)
Q Consensus 85 ~~l~~lgL~~~~~~--~vg~~~~~~LSGGqrqRv----------~ia~aL~~~P~-lLlLDEPtsGLD~~~~~~i~~~l~ 151 (363)
+++...|+.+..+. .+. ..+||||+|+. .+++++...|. ++++||++.-+|.. ...+.+.|.
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~ 322 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIA 322 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHH
Confidence 55667777654321 111 24789988753 34556677887 89999999888743 234444444
Q ss_pred HH---hhcCCCEEEEEecCCC
Q 044411 152 HL---AHITDATILISLLQPS 169 (363)
Q Consensus 152 ~l---~~~~g~tii~~~h~~~ 169 (363)
++ .+..|.++|+++|.|.
T Consensus 323 ~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 323 RLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHhhhCCcEEEEEecCCc
Confidence 44 3444778999998876
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.52 E-value=0.078 Score=48.86 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHH---HHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRL---TTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv---~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~ 154 (363)
+....+.+|+... ...|||+.+++ ++++++..+|+++++|||.. ......+++.++++.
T Consensus 151 L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 151 LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 3445666676532 23689999999 89999999999999999974 344455555555443
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.44 E-value=0.013 Score=49.39 Aligned_cols=40 Identities=10% Similarity=-0.090 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 154 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~ 154 (363)
.+|+|++|++.++|++..+|+++ +|+.....+.+.++.+.
T Consensus 109 ~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 109 YIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp EEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred EEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 49999999999999999999876 68888777777776654
No 141
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.25 E-value=0.0095 Score=56.29 Aligned_cols=69 Identities=13% Similarity=-0.139 Sum_probs=47.1
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
.+.++|++|+..+++..||+|+ .. ... ...+.. ..+.++++.+|+.+..+...
T Consensus 260 ~~~i~~v~q~~~l~dtpgv~e~---~l--~~l----------~~~e~~------------~~~~e~l~~~gl~~f~~~~~ 312 (358)
T 2rcn_A 260 AARLYHFPHGGDVIDSPGVREF---GL--WHL----------EPEQIT------------QGFVEFHDYLGHCKYRDCKH 312 (358)
T ss_dssp CCEEEECTTSCEEEECHHHHTC---CC--CCC----------CHHHHH------------HTSGGGGGGTTCSSSTTCCS
T ss_pred EEEEEEECCCCEecCcccHHHh---hh--cCC----------CHHHHH------------HHHHHHHHHcCCchhcCCCc
Confidence 4578999999999999999984 11 110 000100 12455677888887777665
Q ss_pred cCCcCCCCChHHHHHHHHHHHH
Q 044411 101 GDAIRRGISGGQKRRLTTGEML 122 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL 122 (363)
. ++| ||+||++||+++
T Consensus 313 ~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 313 D-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp S-----SCT-TCHHHHHHHHTS
T ss_pred c-----cCC-HHHHHHHHHhcC
Confidence 4 599 999999999865
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.10 E-value=0.014 Score=53.74 Aligned_cols=90 Identities=7% Similarity=-0.116 Sum_probs=49.6
Q ss_pred cCccccCcccc-c-eeEEEEccccccC-----CCCcHHHHH--HhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchh
Q 044411 10 FGLSVTGEFVP-Q-KLSAYVSQYDLHI-----PEMTVRETL--DFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTY 80 (363)
Q Consensus 10 ~~~~~~~~~~~-~-~~~~yv~Q~~~~~-----~~lTV~E~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
.|.+++..... + +.+||++|.+.+. +.+|+ |++ .|+. ... . . +. ..+..+.. +..
T Consensus 201 ~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~-~~~-------~-~-c~---~~~~~~~~--e~~ 264 (302)
T 2yv5_A 201 RGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFRE-FLR-------Y-Q-CK---YPDCTHTN--EPG 264 (302)
T ss_dssp ----CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGG-GHH-------H-H-HH---STTCCSSS--CTT
T ss_pred CCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHH-HHH-------c-c-CC---CCCCCCCC--CCC
Confidence 45555443222 1 2589999998653 78999 888 3431 000 0 0 00 00000000 011
Q ss_pred hhHHHHHHHcCCcc-cccccccCCcCCCCChHHHHHHHHHH
Q 044411 81 MKTDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGE 120 (363)
Q Consensus 81 ~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGqrqRv~ia~ 120 (363)
.+++++++.++|.+ ..+... +.|||.++|++.|||
T Consensus 265 ~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 265 CAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCR 300 (302)
T ss_dssp CHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSS
T ss_pred CHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhc
Confidence 25889999999986 666554 459999999999986
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.86 E-value=0.00088 Score=64.24 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=54.5
Q ss_pred CC--cEEEEeCCCCCCCHHhHHHHHHHHHHH-hhcCCCEEEEEecCCChHHHhhhccee-eecCC-eEEEecCC
Q 044411 125 PI--KAMFMDKITNGLDISTSFQIVTCLQHL-AHITDATILISLLQPSPETFDLFDDII-LMAEG-KILYHGPR 193 (363)
Q Consensus 125 ~P--~lLlLDEPtsGLD~~~~~~i~~~l~~l-~~~~g~tii~~~h~~~~~~~~~~D~v~-vL~~G-~iv~~G~~ 193 (363)
+| +++++|||+.++|+......++.++.. ++ .|.|++ +| ...++.++||++. +|.+| ++++.|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh-~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MK-AKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HH-HHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cc-cHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 89 999999999999999999999999988 64 466654 55 4568899999999 99999 88776554
No 144
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.52 E-value=0.092 Score=49.52 Aligned_cols=69 Identities=10% Similarity=-0.014 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
++++...+..|+.++..+|+.+++|||.. ..+.+.++.+.. +..+++.++|..+ +...+||+..+..|.
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 35777899999999999999999999986 245566666643 3456777887753 778899999998763
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.45 E-value=0.17 Score=46.38 Aligned_cols=73 Identities=10% Similarity=0.147 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh--cCCCEEEEEecCCChHHHhhhcceeeecCCeEEEe
Q 044411 114 RRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH--ITDATILISLLQPSPETFDLFDDIILMAEGKILYH 190 (363)
Q Consensus 114 qRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~--~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~iv~~ 190 (363)
-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+.. ..+.++++...+...++.+.++++..+..|.++..
T Consensus 173 l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 173 FQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 345555 45899999999 999998776655554433321 11334444223444578888998888888888764
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.41 E-value=0.066 Score=51.92 Aligned_cols=70 Identities=10% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCcEEEEeCCCCCCCH-HhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee-ecCCeEEEecCCC
Q 044411 124 GPIKAMFMDKITNGLDI-STSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL-MAEGKILYHGPRK 194 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~-~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v-L~~G~iv~~G~~~ 194 (363)
.+|++||+||+..-.+. .+...+...+..+.. .|..+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999877664 677788888888765 5778888887765443334444443 4567766655554
No 147
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.38 E-value=0.014 Score=57.50 Aligned_cols=127 Identities=11% Similarity=-0.020 Sum_probs=71.4
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.++|++|+..+++.+||++++.++... +. +.. +++..|..+....
T Consensus 346 r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~-~~----DvV--------------------------LIDTaGrl~~~~~-- 392 (503)
T 2yhs_A 346 RNNIPVIAQHTGADSASVIFDAIQAAKAR-NI----DVL--------------------------IADTAGRLQNKSH-- 392 (503)
T ss_dssp HHTCCEECCSTTCCHHHHHHHHHHHHHHT-TC----SEE--------------------------EECCCCSCCCHHH--
T ss_pred hcCceEEecccCcCHHHHHHHHHHHHHhc-CC----CEE--------------------------EEeCCCccchhhh--
Confidence 45689999998888999999999886421 10 000 0111222111110
Q ss_pred cCCcCCCCChHHHHHHHHHHHH-hCCC-cEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 101 GDAIRRGISGGQKRRLTTGEML-VGPI-KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL-~~~P-~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+-.--+|++.+++++ ...| .+||..++++|.|.. +.++.+.+..+.|.++.||-+ ......+.
T Consensus 393 -------lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTKLD--~takgG~~ 457 (503)
T 2yhs_A 393 -------LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTKLD--GTAKGGVI 457 (503)
T ss_dssp -------HHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEECGG--GCSCCTHH
T ss_pred -------HHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEcCC--CcccccHH
Confidence 111224778888866 3456 566666699887654 223344434567777777633 33444444
Q ss_pred eeeec--CCeEEEecCCCC
Q 044411 179 IILMA--EGKILYHGPRKV 195 (363)
Q Consensus 179 v~vL~--~G~iv~~G~~~~ 195 (363)
+-++. +..|.|.|..+.
T Consensus 458 lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 458 FSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp HHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHHCCCEEEEecCCC
Confidence 44443 346777776553
No 148
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.08 E-value=0.079 Score=49.92 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHH---hC--CCcEEEEeCCC
Q 044411 107 GISGGQKRRLTTGEML---VG--PIKAMFMDKIT 135 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL---~~--~P~lLlLDEPt 135 (363)
.+|+|++||..++++| .. ++.++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 66 89999999997
No 149
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.61 E-value=0.16 Score=43.52 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=53.1
Q ss_pred HHHHHHHHHHh--CCCcEEEEeCCCC--CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 113 KRRLTTGEMLV--GPIKAMFMDKITN--GLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 113 rqRv~ia~aL~--~~P~lLlLDEPts--GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
+..+.-++..+ .+.++++|||.+. .++.....+++++|.+- -.+..+|+|...+.+++.+++|-|--|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 34455566666 5679999999976 34444556688877642 246789999999999999999999988654
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.59 E-value=0.44 Score=43.42 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCC-CCCCCHHhHHHHHHHHHHHh
Q 044411 109 SGGQKRRLTTGEMLVGPIKAMFMDKI-TNGLDISTSFQIVTCLQHLA 154 (363)
Q Consensus 109 SGGqrqRv~ia~aL~~~P~lLlLDEP-tsGLD~~~~~~i~~~l~~l~ 154 (363)
+-.+.+|.+|+.+...+++++|+||| +.|+|......+.+..+.+.
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 34456788999888889999999999 99999988888888777653
No 151
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.25 E-value=0.2 Score=46.76 Aligned_cols=53 Identities=21% Similarity=0.082 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcC-CCEEEEE
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHIT-DATILIS 164 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~-g~tii~~ 164 (363)
.||+++.+|+..|...+.++++++.|+|... ...|...++++.++. |..+|++
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 4999999999999988888999999998643 336666677776665 6666665
No 152
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.24 E-value=0.029 Score=52.32 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=55.0
Q ss_pred ceeEEEEccccccCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHHHHHcCCcccccccc
Q 044411 21 QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYNLKILGLDICADTLV 100 (363)
Q Consensus 21 ~~~~~yv~Q~~~~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 100 (363)
++.+.|++|.+.+.+ ++.|++.......... ... ..... ...+...++.+++.. +++.+
T Consensus 102 ~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~----i~~---~~~~~-----------~~~i~~~l~~~~li~-at~~~ 160 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK--AVEELLYSAIEDFQID----IMI---GKGPS-----------AKSIRIDIQPFTLVG-ATTRS 160 (334)
T ss_dssp TTCEEEEETGGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------CCCEEEE-EESCG
T ss_pred CCCEEEEcchhhcCH--HHHHHHHHHHHhcccc----eee---ccCcc-----------cccccccCCCeEEEE-ecCCc
Confidence 356899999877765 7888885432211100 000 00000 001333444555544 44444
Q ss_pred cCCcCCCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCC
Q 044411 101 GDAIRRGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD 158 (363)
Q Consensus 101 g~~~~~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g 158 (363)
+ .||+|++||+.++ .+||+.+..++.++|++.++..+
T Consensus 161 ~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 161 G-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp G-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred c-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 3 5999999998554 78888899999999998876544
No 153
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.64 E-value=0.72 Score=43.07 Aligned_cols=57 Identities=11% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEe
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISL 165 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~ 165 (363)
..+|+|++|++. +.+...++-++++| +|+.|+|......+++.+..... +..+|++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 457999998876 55556788899999 99999999998888887776542 55665555
No 154
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.57 E-value=0.44 Score=41.41 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=36.4
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 120 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 120 ~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
..++..++++||| ||+..+..+.+.+. .+.+|++++|+. +++. .|+ +.+|
T Consensus 102 ~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~---~Rl--~~rG 151 (219)
T 1s96_A 102 EQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK-IELD---RRL--RGRG 151 (219)
T ss_dssp HHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH-HHHH---HHH--HTTS
T ss_pred HHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH-HHHH---HHH--HHcC
Confidence 4455567999999 99999999998765 377888887654 3433 343 6666
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.48 E-value=0.15 Score=42.83 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHH
Q 044411 113 KRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 152 (363)
Q Consensus 113 rqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~ 152 (363)
.+.+.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 44578899999999999999 999999999999988765
No 156
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.81 E-value=1.8 Score=38.80 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCCCCCCC
Q 044411 109 SGGQKRRLTTGEMLVGPIKAMFMDKITNGLD 139 (363)
Q Consensus 109 SGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD 139 (363)
+++++.+..++.+...+|.+|++||+.+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 5678888888888889999999999987654
No 157
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.43 E-value=0.014 Score=50.02 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHH-HHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 118 TGE-MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 118 ia~-aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
.++ +++.+|++++|||+|+++|..+...|.+.|....++ . ...| . . ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~--~---~~a~--~-~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD--M---ESSK--E-P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH--T---TGGG--S-T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--H---HHhh--c-c--CCceEEEECCC
Confidence 344 677788888889999999999999999988877543 1 1123 1 1 46888877753
No 158
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.31 E-value=1.7 Score=39.91 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHHHHHh---CCCcEEEEeCCCCCCCH--------H----hHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 114 RRLTTGEMLV---GPIKAMFMDKITNGLDI--------S----TSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 114 qRv~ia~aL~---~~P~lLlLDEPtsGLD~--------~----~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
+.+..++.++ .+|+++++|+.++-... . ...+++..|+.++++.+.+||++.|
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 5566777777 67999999999975532 1 1345666777787777888888754
No 159
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=78.26 E-value=1.1 Score=41.54 Aligned_cols=46 Identities=4% Similarity=-0.024 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHHhC------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh
Q 044411 106 RGISGGQKRRLTTGEMLVG------PIKAMFMDKITNGLDISTSFQIVTCLQHLAH 155 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~------~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~ 155 (363)
..+|+|++|++..+++++. .|++++ +|++|......+++.|.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999887 688876 999999999999999887643
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.59 E-value=0.0037 Score=56.47 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=44.1
Q ss_pred cccccccCCcCCCCChHHHHHHHHHHHHhCCCcE--EEEeCCCCCCCHHhH---------HHHHHHHHHHhhcCCCEEEE
Q 044411 95 CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKA--MFMDKITNGLDISTS---------FQIVTCLQHLAHITDATILI 163 (363)
Q Consensus 95 ~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~l--LlLDEPtsGLD~~~~---------~~i~~~l~~l~~~~g~tii~ 163 (363)
..+..++....+ +|+| ||+++++++..+|++ +++||.|+.||...+ ..+.+.++.+. .|.|.+.
T Consensus 161 ~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~g~t~~~ 235 (261)
T 2eyu_A 161 ILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK--QGLITLE 235 (261)
T ss_dssp HEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH--TTSSCHH
T ss_pred HhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH--cCCCCHH
Confidence 445555543322 6888 899999999999999 999999999998632 23444555543 3665543
No 161
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.40 E-value=2.5 Score=38.68 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCE--EEEE
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT--ILIS 164 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~t--ii~~ 164 (363)
||+++++|+..|...+.++++++.|+|... ...+...++++.++.+.. +|++
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 899999999999888888899999998633 345666667766555666 6665
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.25 E-value=7.9 Score=36.06 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=43.1
Q ss_pred HHHHHHHHh--CCCcEEEEeCCCCCCCHH-------------hH---HHHHHHHHHHhhcCCCEEEEEecCCCh------
Q 044411 115 RLTTGEMLV--GPIKAMFMDKITNGLDIS-------------TS---FQIVTCLQHLAHITDATILISLLQPSP------ 170 (363)
Q Consensus 115 Rv~ia~aL~--~~P~lLlLDEPtsGLD~~-------------~~---~~i~~~l~~l~~~~g~tii~~~h~~~~------ 170 (363)
-..+++.++ .+++++++|++++-.... .. ..++..|..++++.+.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 445666664 689999999999866311 11 223334444456678888886543211
Q ss_pred ---------HHHhhhcceeeecCCeEE
Q 044411 171 ---------ETFDLFDDIILMAEGKIL 188 (363)
Q Consensus 171 ---------~~~~~~D~v~vL~~G~iv 188 (363)
.+...+|-++.+...+..
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCcccCCCcceeeeccEEEEEEEeeee
Confidence 234567777777655443
No 163
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=75.76 E-value=3.7 Score=35.63 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec---------CCChHHHhhhcceeeec
Q 044411 125 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL---------QPSPETFDLFDDIILMA 183 (363)
Q Consensus 125 ~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h---------~~~~~~~~~~D~v~vL~ 183 (363)
+|+++++||--. |+. .+++.++.+++ .|.+||++-| ..+..+..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 35556677776 4889999887 56678889999999874
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.46 E-value=0.73 Score=46.41 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHH
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 152 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~ 152 (363)
.++|+|++|++..+.....++.+|||||... |++.....+.+.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 4699999999999999999999999999988 899999999888874
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=74.82 E-value=1.5 Score=36.58 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 044411 115 RLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 153 (363)
Q Consensus 115 Rv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l 153 (363)
....|++++.+|.++++| ||++|.....++++.|.+.
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 346689999999999999 9999999999998877654
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=71.78 E-value=0.038 Score=47.55 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHH-HHHhCCCcEEEEeCCC
Q 044411 107 GISGGQKRRLTTG-EMLVGPIKAMFMDKIT 135 (363)
Q Consensus 107 ~LSGGqrqRv~ia-~aL~~~P~lLlLDEPt 135 (363)
++|+||+||++++ ++++.++.++++|||.
T Consensus 111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 4799999999998 7888888888888873
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.67 E-value=24 Score=32.77 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=45.5
Q ss_pred HHHHHHHHHh--CCCcEEEEeCCCCCCC----------------HHhHHHHHHHHHHHhhcCCCEEEEEecCCC------
Q 044411 114 RRLTTGEMLV--GPIKAMFMDKITNGLD----------------ISTSFQIVTCLQHLAHITDATILISLLQPS------ 169 (363)
Q Consensus 114 qRv~ia~aL~--~~P~lLlLDEPtsGLD----------------~~~~~~i~~~l~~l~~~~g~tii~~~h~~~------ 169 (363)
+-+.+++.++ ..|+++++|+-++=.. ......++..|..++++.+.+||++.|-..
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3455666654 5799999998765543 112234556677788777888888765411
Q ss_pred ---------hHHHhhhcceeeecC
Q 044411 170 ---------PETFDLFDDIILMAE 184 (363)
Q Consensus 170 ---------~~~~~~~D~v~vL~~ 184 (363)
..+..++|.++.+..
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEe
Confidence 114567888888875
No 168
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.95 E-value=0.1 Score=47.15 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCC
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKIT 135 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPt 135 (363)
..|||||+||+.+++++.++|++| ||++
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 359999999999999999999975 8875
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.43 E-value=0.0094 Score=56.69 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=33.8
Q ss_pred cccccccCCcCCCCChHHHHHHHHHHHHhCCCcE--EEEeCCCCCCCHH
Q 044411 95 CADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKA--MFMDKITNGLDIS 141 (363)
Q Consensus 95 ~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~l--LlLDEPtsGLD~~ 141 (363)
..+..++...++ +||| ||++|++++..+|++ +++||.|+.||..
T Consensus 272 ~l~~vv~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 272 ILQGIISQRLLP-KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp SCCEEEEEEEEE-CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred hhhEEEEEEeEe-cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 344445432222 5888 889999999999999 9999999999865
No 170
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.03 E-value=5.2 Score=36.95 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=37.0
Q ss_pred HHHHHHHHHh----CCCcEEEEeCCCCCCCHH------------hHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 114 RRLTTGEMLV----GPIKAMFMDKITNGLDIS------------TSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 114 qRv~ia~aL~----~~P~lLlLDEPtsGLD~~------------~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
+.+..++.++ .+++++++|+.++-.... ....++..|+.++++.+.+||++.|
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 4444555555 679999999999866432 1355667777888777888888654
No 171
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.65 E-value=9.7 Score=36.45 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHh--CCCcEEEEeCCCCCCCH----------HhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 108 ISGGQKRRLTTGEMLV--GPIKAMFMDKITNGLDI----------STSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~--~~P~lLlLDEPtsGLD~----------~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
+|..+- .+.++.+. .+|+++++|..+.-.++ .....+...|+.++++.+.+||+++|
T Consensus 293 ~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 293 LTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp CBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 555544 23344444 57999999998754322 12356778888888888889888765
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=65.96 E-value=3.6 Score=38.56 Aligned_cols=69 Identities=13% Similarity=-0.006 Sum_probs=47.4
Q ss_pred HHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHH----HHH-hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhc
Q 044411 83 TDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG----EML-VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI 156 (363)
Q Consensus 83 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia----~aL-~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~ 156 (363)
+.++++.+++.+..--.|++ +..-+|+|+++++.++ +++ ..+|++ +|+|++|......+.+.|.+....
T Consensus 281 ~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 56677887776543222333 2234788888888877 555 444454 899999999999999988876543
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=65.16 E-value=10 Score=34.83 Aligned_cols=44 Identities=9% Similarity=-0.040 Sum_probs=32.4
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhc--CCCEEEEEecCC
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHI--TDATILISLLQP 168 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~--~g~tii~~~h~~ 168 (363)
..|.++++||+... |......+...+.++... .+.++|+++|.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 56889999999876 888888887777655431 366777777665
No 174
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.06 E-value=0.23 Score=47.74 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCcEEE
Q 044411 86 NLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIKAMF 130 (363)
Q Consensus 86 ~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~lLl 130 (363)
.|..+|+.+.. .. ..|||||+|| ||++|+.+|++..
T Consensus 279 rL~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 RLRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccC
Confidence 46677887543 22 3599999999 9999999999865
No 175
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.49 E-value=0.011 Score=58.69 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEE--EecCCChHHHhhh
Q 044411 106 RGISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILI--SLLQPSPETFDLF 176 (363)
Q Consensus 106 ~~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~--~~h~~~~~~~~~~ 176 (363)
..+||||+||++++. + | |+|||+.....+++.+.++.. .+.|+++ ++| ...++...|
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH-~l~ei~~~~ 457 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPK-KLEKMADFL 457 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCT-HHHHHHHHH
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHH-HHHHHHHHc
Confidence 347999999876641 1 7 999999887777777776654 3677764 454 344565555
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=62.38 E-value=5.6 Score=36.06 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 124 GPIKAMFMDKITN-GLDISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 124 ~~P~lLlLDEPts-GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
.+|.+|++||+.. .-+......+...+..+.. .+..+|++++.+..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 4689999999865 2344677888888887765 46677777765543
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=61.72 E-value=3 Score=34.89 Aligned_cols=50 Identities=6% Similarity=0.047 Sum_probs=27.2
Q ss_pred CCCcEEEEeCCCC-CCCHHhHHHHH-HHHHHHhhcCCCEEEEEecCCChHHHh
Q 044411 124 GPIKAMFMDKITN-GLDISTSFQIV-TCLQHLAHITDATILISLLQPSPETFD 174 (363)
Q Consensus 124 ~~P~lLlLDEPts-GLD~~~~~~i~-~~l~~l~~~~g~tii~~~h~~~~~~~~ 174 (363)
.++++|++||+-. .++......++ .++..... .+..+|++++.+..++..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~-~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMF-ENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHH-TTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHH
Confidence 4578999999932 23333333344 35544323 356677777766555443
No 178
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=60.65 E-value=20 Score=34.34 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCCc--EEEEeCCCC--CC----C-HHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 124 GPIK--AMFMDKITN--GL----D-ISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 124 ~~P~--lLlLDEPts--GL----D-~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
.+|+ ++++|--.. +- + ......+...|+.++++.+.+||+++|
T Consensus 307 ~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 358 (444)
T 3bgw_A 307 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 358 (444)
T ss_dssp SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3677 777775532 10 1 113345666777777777777777665
No 179
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=60.51 E-value=13 Score=32.51 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=42.5
Q ss_pred hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC---------CChHHHhhhcceeeec
Q 044411 123 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ---------PSPETFDLFDDIILMA 183 (363)
Q Consensus 123 ~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~---------~~~~~~~~~D~v~vL~ 183 (363)
+.+.+++++||----.| +.++++.+++ .|..||++-+. .+.++..+||.|.-|.
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 37789999999976644 5555555554 58899999888 7889999999998874
No 180
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=59.87 E-value=11 Score=33.91 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHHh--CCCcEEEEeCCCCCCCHHh-HHHHHHHHHHHhhcCCC-EEEEEecCCChHHHhhhcceee
Q 044411 108 ISGGQKRRLTTGEMLV--GPIKAMFMDKITNGLDIST-SFQIVTCLQHLAHITDA-TILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~--~~P~lLlLDEPtsGLD~~~-~~~i~~~l~~l~~~~g~-tii~~~h~~~~~~~~~~D~v~v 181 (363)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++..+. .++.++-+....+..++|.+.-
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHH
Confidence 888886 4566666 78999999 7899876 66777888888764453 3443333444577888887764
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=59.19 E-value=1.7 Score=36.56 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH--Hhhhcceeee
Q 044411 109 SGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET--FDLFDDIILM 182 (363)
Q Consensus 109 SGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~--~~~~D~v~vL 182 (363)
+.|+.+|..++..+..+|..+.++ .+.++|.....+.+.+... .+.++|+.+|... +. ...||.++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~-e~~~~~~~d~vi~l 130 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLI-ENKLTALCDRILVV 130 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTT-TTTCGGGCSEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhh-hcCcHhhCCEEEEE
Confidence 688999999999888888654333 3456666666666555432 2446776654332 22 4567776666
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=58.02 E-value=1.2 Score=40.65 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=33.3
Q ss_pred eEEEEccccc----------------cCCCCcHHHHHHhhhhhccCCCchhhhhhhcHHHHhhhcCCCCCcchhhhHHHH
Q 044411 23 LSAYVSQYDL----------------HIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKTDYN 86 (363)
Q Consensus 23 ~~~yv~Q~~~----------------~~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 86 (363)
.+|||+|.+. ++|.+|+ ||+.|+.. .... +...++.++
T Consensus 221 ~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~-~~~~------------------------e~~~~v~~~ 274 (301)
T 1u0l_A 221 FGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDC-NHVD------------------------EPECGVKEA 274 (301)
T ss_dssp TSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTC-CSSS------------------------CSSCHHHHH
T ss_pred CCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCC-cCCC------------------------CCCcHHHHH
Confidence 5799999874 5788888 88877421 1000 001248889
Q ss_pred HHHcCCc-ccccccc
Q 044411 87 LKILGLD-ICADTLV 100 (363)
Q Consensus 87 l~~lgL~-~~~~~~v 100 (363)
|+.+||. +..+...
T Consensus 275 l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 275 VENGEIAESRYENYV 289 (301)
T ss_dssp HHHTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 9999995 5555543
No 183
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=56.88 E-value=6.9 Score=39.30 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=45.3
Q ss_pred CCCh-HHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 107 GISG-GQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 107 ~LSG-GqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
+|+. ++++...+.+.++.+|..++++.+|+.+|..+. ...++++.+...++.||++.++
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 4544 456778899999999999999999999998844 4667777776555677777765
No 184
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=55.25 E-value=22 Score=29.79 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=40.0
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec---------CCChHHHhhhcceeeec
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL---------QPSPETFDLFDDIILMA 183 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h---------~~~~~~~~~~D~v~vL~ 183 (363)
.+.+++++||--- +|+. +++.++.++.. |..||++-+ .++.++..++|.|.-|.
T Consensus 80 ~~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999543 5543 35567777764 889998876 55678999999997774
No 185
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=55.04 E-value=16 Score=32.75 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCcEEEEeCCCC-------------CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 116 LTTGEMLVGPIKAMFMDKITN-------------GLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 116 v~ia~aL~~~P~lLlLDEPts-------------GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
-.+..+....|.++++||.-+ +........++..+..+....+..||.+++.+
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 334455567899999999642 22233345566656544333345666666554
No 186
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=52.51 E-value=30 Score=29.51 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 109 SGGQKRRLTTGEMLVGPIKAMFMDKITN-GLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 109 SGGqrqRv~ia~aL~~~P~lLlLDEPts-GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... .-.++++|...+.+...++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 445544442 33578899999999976 6887766555554444332 2346777766666555555554
No 187
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.18 E-value=11 Score=31.46 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=28.1
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 125 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 125 ~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
+|.++++||.-. +|......+.+.+.+.. .+..+|++++.+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~--~~~~~i~~t~~~ 166 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPP--EHVKFLLATTDP 166 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCC--TTEEEEEEESCG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCC--CceEEEEEeCCh
Confidence 578999999765 78877777777765431 245566666543
No 188
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=52.15 E-value=17 Score=31.83 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=30.2
Q ss_pred HHHHHHhCCCcEEEEeCCCCC----------CCHHhHHHHHHHHHHHh---hcCCCEEEEEec
Q 044411 117 TTGEMLVGPIKAMFMDKITNG----------LDISTSFQIVTCLQHLA---HITDATILISLL 166 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPtsG----------LD~~~~~~i~~~l~~l~---~~~g~tii~~~h 166 (363)
.+..+....|.+|++||.-.- -+......+..++..+. ...+..+|+++.
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 344566678999999998431 25555666777776652 222344555554
No 189
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.92 E-value=22 Score=33.15 Aligned_cols=45 Identities=4% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCCcEEEEeCCCCCCC---HHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 124 GPIKAMFMDKITNGLD---ISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD---~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
..|.++++||--.=++ +.....+.+.+++.++ .|..+++++|.+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVI 308 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHH
Confidence 4689999999988774 6677788888888765 5778888776654
No 190
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=50.53 E-value=13 Score=31.91 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec---------CCChHHHhhhcceeeec
Q 044411 125 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL---------QPSPETFDLFDDIILMA 183 (363)
Q Consensus 125 ~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h---------~~~~~~~~~~D~v~vL~ 183 (363)
+.+++++||--- +|+. +++.++.++.. |..||++-+ .++..+..+||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 5543 33667777664 889999887 67889999999999885
No 191
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=50.46 E-value=7.9 Score=35.31 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.5
Q ss_pred EEEEccccccCC----CCcHHHHHH
Q 044411 24 SAYVSQYDLHIP----EMTVRETLD 44 (363)
Q Consensus 24 ~~yv~Q~~~~~~----~lTV~E~l~ 44 (363)
.+|++|.+.+.+ .+|+ |++.
T Consensus 225 ~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 225 GGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp TEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred CEEEecCCCccccccccCCH-HHHH
Confidence 799999988765 6899 8883
No 192
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=49.36 E-value=67 Score=29.79 Aligned_cols=72 Identities=13% Similarity=0.032 Sum_probs=41.5
Q ss_pred HHHHHHHHHh--CCCcEEEEeCCCCCCC-----H--------HhHHHHHHHHHH---HhhcCCCEEEEEecCCChH----
Q 044411 114 RRLTTGEMLV--GPIKAMFMDKITNGLD-----I--------STSFQIVTCLQH---LAHITDATILISLLQPSPE---- 171 (363)
Q Consensus 114 qRv~ia~aL~--~~P~lLlLDEPtsGLD-----~--------~~~~~i~~~l~~---l~~~~g~tii~~~h~~~~~---- 171 (363)
+-+.+++.++ .+++++++|..++=.. . .....+.+.+++ ++++.+.+||++.| ....
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq-~~~~~~~~ 217 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ-VREKIGVM 217 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE-C-------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe-cccccCcc
Confidence 3455666665 5689999999986441 1 111334444444 46777888887654 3321
Q ss_pred ------------HHhhhcceeeecCCe
Q 044411 172 ------------TFDLFDDIILMAEGK 186 (363)
Q Consensus 172 ------------~~~~~D~v~vL~~G~ 186 (363)
+...+|-++.|..+.
T Consensus 218 fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 218 YGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp --------CHHHHHHHCSEEEEEEEES
T ss_pred cCCccccCCcchhhheeeEEEEEEecc
Confidence 244567777766543
No 193
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.64 E-value=14 Score=33.37 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 125 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 125 ~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
++.++++|| ...+++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCchh
Confidence 567999999 788999888888888887642 344555555543
No 194
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=48.51 E-value=0.51 Score=46.58 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=44.1
Q ss_pred HHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHH--HhhhcceeeecCCeEEE
Q 044411 120 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET--FDLFDDIILMAEGKILY 189 (363)
Q Consensus 120 ~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~--~~~~D~v~vL~~G~iv~ 189 (363)
|+|..+ +|||+ ||.+.+|| .+..+.. ++.+.-+.++.+++ |++.++ ..++|++..+..|.++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vs-a~md~~t~~~la~~ia~~gg~gii~ 92 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLIS-SPMDTVTEADMAIAMALMGGIGFIH 92 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEE-CCCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEE-EehhhhhhhhHHHHHHhcCCeeEEe
Confidence 788889 99999 99999999 4433332 23333344555545 466677 77899999888777664
No 195
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=47.78 E-value=17 Score=32.85 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHh---CCCcEEEEeCCCCCCC--------HH----hHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 116 LTTGEMLV---GPIKAMFMDKITNGLD--------IS----TSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 116 v~ia~aL~---~~P~lLlLDEPtsGLD--------~~----~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
+...+.++ .+++++++|..++-.. .. ...+++..|+.++++.+.+||++.|
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 33344454 4689999999875321 11 1355667777888888888888654
No 196
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=46.37 E-value=75 Score=24.12 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=41.1
Q ss_pred CCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 124 GPIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 124 ~~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
.+|+.+++| ...+.+|+.....+.++.+++.+ .|..++++ .+.+.+.+.+.+.
T Consensus 47 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~--~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHK-RGIKVLIS--GANSRVSQKLVKA 100 (130)
T ss_dssp SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEE--CCCHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHH-CCCEEEEE--cCCHHHHHHHHHc
Confidence 578889999 67899999999999999999876 57777776 4455666665543
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=44.24 E-value=32 Score=31.07 Aligned_cols=60 Identities=17% Similarity=0.049 Sum_probs=39.6
Q ss_pred CCCc--EEEEeCCCCCC------CH-HhHHHHHHHHHHHhhcCCCEEEEEecCCC------------------hHHHhhh
Q 044411 124 GPIK--AMFMDKITNGL------DI-STSFQIVTCLQHLAHITDATILISLLQPS------------------PETFDLF 176 (363)
Q Consensus 124 ~~P~--lLlLDEPtsGL------D~-~~~~~i~~~l~~l~~~~g~tii~~~h~~~------------------~~~~~~~ 176 (363)
.+++ ++++|--+.=- +. .....+...|+.++++.+.+|++++|-.. ..+...+
T Consensus 178 ~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~a 257 (315)
T 3bh0_A 178 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDA 257 (315)
T ss_dssp SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHC
T ss_pred cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhC
Confidence 3678 99999764211 11 33456778888999888999998765321 1255667
Q ss_pred cceeeec
Q 044411 177 DDIILMA 183 (363)
Q Consensus 177 D~v~vL~ 183 (363)
|-|++|.
T Consensus 258 D~vi~L~ 264 (315)
T 3bh0_A 258 DIIEFLY 264 (315)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 7777774
No 198
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.71 E-value=60 Score=31.27 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHh--CCCcEEEEeCCCCCC-------CH-HhHHHHHHHHHHHhhcCCCEEEEEecCCC----------------
Q 044411 116 LTTGEMLV--GPIKAMFMDKITNGL-------DI-STSFQIVTCLQHLAHITDATILISLLQPS---------------- 169 (363)
Q Consensus 116 v~ia~aL~--~~P~lLlLDEPtsGL-------D~-~~~~~i~~~l~~l~~~~g~tii~~~h~~~---------------- 169 (363)
+..++.++ .+|+++++|=-+. + +. .....++..|+.++++.+.+||+++|-..
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~ 421 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSIT 421 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSS
T ss_pred HHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChh
Confidence 33444443 4799999996543 2 11 23356778888899888999998876432
Q ss_pred -----hHHHhhhcceeeec
Q 044411 170 -----PETFDLFDDIILMA 183 (363)
Q Consensus 170 -----~~~~~~~D~v~vL~ 183 (363)
..+...+|-|+.|.
T Consensus 422 dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 422 DLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SCSSSSHHHHHCSEEEEEE
T ss_pred hhccchHhhecCcEEEEEE
Confidence 12456788888885
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=42.62 E-value=60 Score=29.69 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCcEEEEeCC
Q 044411 115 RLTTGEMLVGPIKAMFMDKI 134 (363)
Q Consensus 115 Rv~ia~aL~~~P~lLlLDEP 134 (363)
+..+..+-...|.+||+||.
T Consensus 166 ~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHHhcCCeEEEEeCc
Confidence 44445556678999999998
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=41.81 E-value=11 Score=34.04 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=26.0
Q ss_pred CCCcEEEEeCCC-CCCCHHhHHHHHH-HHHHHhhcCCCEEEEEecCCChHHH
Q 044411 124 GPIKAMFMDKIT-NGLDISTSFQIVT-CLQHLAHITDATILISLLQPSPETF 173 (363)
Q Consensus 124 ~~P~lLlLDEPt-sGLD~~~~~~i~~-~l~~l~~~~g~tii~~~h~~~~~~~ 173 (363)
.++++|++||.- ..++......++. ++...... +..+|+|+..+..+..
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~-~~~~IitSN~~~~~l~ 263 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLE-ELPTFFTSNYSFADLE 263 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHH-TCCEEEEESSCHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHHH
Confidence 467899999983 2344444444544 55543222 4567777766654443
No 201
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.71 E-value=7.2 Score=35.71 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCCCCCCH---HhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 124 GPIKAMFMDKITNGLDI---STSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~---~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
..|.++++||+....+. .....+.+.+..+ ...+.++|+++|++
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDV 173 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCG
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCC
Confidence 34899999999775532 2222333333221 22356677777654
No 202
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=40.79 E-value=91 Score=23.88 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=40.0
Q ss_pred CCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 124 GPIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 124 ~~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+++.+++| ...+.+|+.....+.++.+++.+. |..++++ .+.+.+.+.+++
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~-g~~l~l~--~~~~~v~~~l~~ 102 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKR-GTILLLS--GVSDRLYGALNR 102 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHH-TCEEEEE--SCCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHC-CCEEEEE--cCCHHHHHHHHH
Confidence 467889998 567899999999999999998764 7777766 445566665554
No 203
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=38.08 E-value=27 Score=29.19 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=29.1
Q ss_pred CCCcEEEEeCCCCCC-CHHhHHHHHHHHHHHhhcCCCE-EEEEecCCC
Q 044411 124 GPIKAMFMDKITNGL-DISTSFQIVTCLQHLAHITDAT-ILISLLQPS 169 (363)
Q Consensus 124 ~~P~lLlLDEPtsGL-D~~~~~~i~~~l~~l~~~~g~t-ii~~~h~~~ 169 (363)
.+|.++++||...-- +......+.+.+...... +.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCCH
Confidence 578999999965432 233366788888877654 444 666665443
No 204
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=36.60 E-value=22 Score=29.37 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=36.4
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC---------CChHHHhhhcceeeec
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ---------PSPETFDLFDDIILMA 183 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~---------~~~~~~~~~D~v~vL~ 183 (363)
.+++++++||--. +++ .+.+.++.+++. |..|+++-+. ....+.+++|.|.-|.
T Consensus 75 ~~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3578999999743 443 356667777764 7888887662 2245667788887664
No 205
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=36.21 E-value=23 Score=32.53 Aligned_cols=57 Identities=9% Similarity=-0.008 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEe
Q 044411 108 ISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 165 (363)
Q Consensus 108 LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~ 165 (363)
.+++++++..+++..+.+|++++|.-..+..|... .....+++.+...+..++++.+
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEE
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEe
Confidence 56788899999999999999877774334445443 4456667776554335666654
No 206
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=35.97 E-value=1.3e+02 Score=23.04 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=40.5
Q ss_pred CCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhccee
Q 044411 125 PIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDII 180 (363)
Q Consensus 125 ~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~ 180 (363)
+++.++|| ...+.+|+.....+.++.+++.+ .|..+.++ .+.+.+.+.+.+.-
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~--~~~~~v~~~l~~~g 116 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGD-VGIYVYLA--GCSAQVVNDLTSNR 116 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEE--SCCHHHHHHHHHTT
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHH-CCCEEEEE--eCCHHHHHHHHhCC
Confidence 56788888 57889999999999999999876 57777766 44556766665443
No 207
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=35.87 E-value=51 Score=28.08 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=13.6
Q ss_pred HHHHHHhCCCcEEEEeCCCC
Q 044411 117 TTGEMLVGPIKAMFMDKITN 136 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPts 136 (363)
.+..+....|.+|++||.-.
T Consensus 90 ~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp HHHHHHHTCSEEEEEECC--
T ss_pred HHHHHHhcCCeEEEEeCcch
Confidence 34455556799999999864
No 208
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=35.85 E-value=98 Score=28.23 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=14.5
Q ss_pred HHHHHHhCCCcEEEEeCCCC
Q 044411 117 TTGEMLVGPIKAMFMDKITN 136 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPts 136 (363)
.+..+-...|.|||+||--+
T Consensus 135 ~f~~a~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDA 154 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGG
T ss_pred HHHHHHHcCCeEEEEechHh
Confidence 34445557899999999753
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=34.74 E-value=36 Score=33.05 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHhCCCcEEEEeCCC----------CCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 118 TGEMLVGPIKAMFMDKIT----------NGLDISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 118 ia~aL~~~P~lLlLDEPt----------sGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
+..+--..|.+|||||.- ..+.......++..+..+....+..||.+++.+
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 445556789999999971 222334455566666655433344555565544
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=32.94 E-value=47 Score=29.23 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=25.8
Q ss_pred HHHHHhCC-CcEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 044411 118 TGEMLVGP-IKAMFMDKITNGLDISTSFQIVTCLQHL 153 (363)
Q Consensus 118 ia~aL~~~-P~lLlLDEPtsGLD~~~~~~i~~~l~~l 153 (363)
+..++... ..++++||. ..+++.....+.+.+.+-
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 44444433 489999998 668888888888888763
No 211
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=32.27 E-value=59 Score=24.74 Aligned_cols=52 Identities=4% Similarity=0.068 Sum_probs=39.4
Q ss_pred CCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcce
Q 044411 125 PIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDI 179 (363)
Q Consensus 125 ~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v 179 (363)
+++.+++| .-.+.+|+.....+.++.+++.+ .|..++++ .+.+.+.+.+.+.
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~--~~~~~v~~~l~~~ 99 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLR-RGIVFAMA--RVKQDLRESLRAA 99 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHT-TTEEEEEE--CCSSHHHHHHHHC
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHH-CCCEEEEE--cCCHHHHHHHHHc
Confidence 46889999 67889999999999999999875 57777766 3444666665543
No 212
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=32.03 E-value=54 Score=26.65 Aligned_cols=41 Identities=15% Similarity=0.339 Sum_probs=27.7
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecC
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 167 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~ 167 (363)
.++.++++||. ..+++.....+.+.+.... .+..+|+++..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESC
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCC
Confidence 56889999996 4567777777777776642 24455665543
No 213
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=31.97 E-value=85 Score=23.48 Aligned_cols=54 Identities=6% Similarity=0.043 Sum_probs=40.7
Q ss_pred CCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceee
Q 044411 124 GPIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIIL 181 (363)
Q Consensus 124 ~~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~v 181 (363)
.+|+.+++| ...+.+|+.....+.+..+++.+ |..++++ ...+.+.+.+.+.-+
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~--g~~l~l~--~~~~~v~~~l~~~gl 98 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE--GCELRVC--NVEFQPLRTMARAGI 98 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT--TCEEEEE--CCCHHHHHHHHHTTC
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC--CCEEEEe--cCCHHHHHHHHHcCC
Confidence 467888888 67889999999999999998864 7777766 345567766665443
No 214
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=30.50 E-value=1.1e+02 Score=34.54 Aligned_cols=72 Identities=6% Similarity=-0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHh--CCCcEEEEeCCCCCCC-H------------HhHHHHHHHHHH---HhhcCCCEEEEEecCC--------
Q 044411 115 RLTTGEMLV--GPIKAMFMDKITNGLD-I------------STSFQIVTCLQH---LAHITDATILISLLQP-------- 168 (363)
Q Consensus 115 Rv~ia~aL~--~~P~lLlLDEPtsGLD-~------------~~~~~i~~~l~~---l~~~~g~tii~~~h~~-------- 168 (363)
-...++.++ .+|+++++|+..+=.. . ...+.+.+.+++ ++++.+.+||++.|-.
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G 877 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 877 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC
Confidence 344444443 6899999999987552 1 122345444444 5677788888876521
Q ss_pred -------ChHHHhhhcceeeecCCe
Q 044411 169 -------SPETFDLFDDIILMAEGK 186 (363)
Q Consensus 169 -------~~~~~~~~D~v~vL~~G~ 186 (363)
...+.+.+|-++.+.++.
T Consensus 878 dp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 878 NPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp CCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CccccCCcchhhheeeEEEEEEecc
Confidence 124667788888886543
No 215
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=29.57 E-value=1.5e+02 Score=21.07 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=37.3
Q ss_pred cEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 127 KAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 127 ~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
+.+++| .-.+.+|+.....+.+..+++.+ .|..+.++ .+.+.+.++++.
T Consensus 45 ~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~--~~~~~v~~~l~~ 94 (110)
T 1sbo_A 45 KKIVLDLSSVSYMDSAGLGTLVVILKDAKI-NGKEFILS--SLKESISRILKL 94 (110)
T ss_dssp SEEEEECTTCCCBCHHHHHHHHHHHHHHHH-TTCEEEEE--SCCHHHHHHHHH
T ss_pred cEEEEECCCCcEEccHHHHHHHHHHHHHHH-cCCEEEEE--eCCHHHHHHHHH
Confidence 678888 67889999999999999998876 47777665 455566666553
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=27.89 E-value=1e+02 Score=29.11 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEE
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 164 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~ 164 (363)
.||..+.+|+.-|...+.+.++++.|+|. ++. .++...++++.++.+..+|++
T Consensus 264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 264 QLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp GCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEE
Confidence 48999999999887777777888888763 333 345556666665556666654
No 217
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=27.02 E-value=0.89 Score=40.62 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHHHHHhCCCcE
Q 044411 107 GISGGQKRRLTTGEMLVGPIKA 128 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~l 128 (363)
.|||||+||+.+++++.++|++
T Consensus 169 ~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 169 EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HHTTCCTTCCEEEEEEESCTTS
T ss_pred HHhCCCCCCCEEEEEecCCchh
Confidence 4899999999999999999875
No 218
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=27.00 E-value=48 Score=24.11 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=37.7
Q ss_pred CCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 124 GPIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 124 ~~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+|+.+++| .....+|+.....+.+..+++.+ .|..+.++ .+.+.+.+++++
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~--~~~~~v~~~l~~ 94 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRR-EGAEVRIV--GMNEASETMVDR 94 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHH-TTCEEEEE--SHHHHHTTCC--
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHh-CCCEEEEE--cCCHHHHHHHHH
Confidence 357778887 56889999999999999999876 57788776 344455554443
No 219
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.00 E-value=34 Score=29.64 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=26.1
Q ss_pred HHHHHhCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 118 TGEMLVGPIKAMFMDKITN-GLDISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 118 ia~aL~~~P~lLlLDEPts-GLD~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
+..++...|+++++||+-. ..+.......++.+..+-. .|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 3333446899999999863 1332222222333333323 4778887765
No 220
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=26.88 E-value=91 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCCe
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEGK 186 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G~ 186 (363)
.++.+.++...+ .|..+|.+|..+...+.+++|.++.+..+.
T Consensus 93 ~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAKS-LHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 456666665544 577777666666667889999888776543
No 221
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=25.36 E-value=3.1e+02 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=14.2
Q ss_pred HHHHHhCCCcEEEEeCCCC
Q 044411 118 TGEMLVGPIKAMFMDKITN 136 (363)
Q Consensus 118 ia~aL~~~P~lLlLDEPts 136 (363)
+..+-...|.++|+||.-+
T Consensus 98 f~~a~~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDS 116 (322)
T ss_dssp HHHHHHTSSEEEEEETTTG
T ss_pred HHHHHhcCCcEEEeecHHH
Confidence 3445567899999999853
No 222
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=25.27 E-value=1.4e+02 Score=34.48 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=46.7
Q ss_pred HHHHHHHHh--CCCcEEEEeCCCCCCC-H------------HhHHHHHHHHHHH---hhcCCCEEEEEecCCCh------
Q 044411 115 RLTTGEMLV--GPIKAMFMDKITNGLD-I------------STSFQIVTCLQHL---AHITDATILISLLQPSP------ 170 (363)
Q Consensus 115 Rv~ia~aL~--~~P~lLlLDEPtsGLD-~------------~~~~~i~~~l~~l---~~~~g~tii~~~h~~~~------ 170 (363)
-+.+++.++ .+|+++++|..++-.. + ...+.+.+.++.+ +++.+.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 456666554 5799999999886553 1 1223455555555 67788898887643111
Q ss_pred ---------HHHhhhcceeeecCCeE
Q 044411 171 ---------ETFDLFDDIILMAEGKI 187 (363)
Q Consensus 171 ---------~~~~~~D~v~vL~~G~i 187 (363)
.+...+|.++.|.+...
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 35678898888876543
No 223
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=25.02 E-value=1.4e+02 Score=22.79 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=30.5
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 125 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 125 ~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
+..++++||.- .+++..+..+.+.+.+... .+..+|+++..+.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~-~~~~iI~~tn~~~ 117 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAER-CRVRVIASCSYAA 117 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTT-TTCEEEEEEEECT
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCC-CCEEEEEecCCCH
Confidence 46799999974 6788888888888876532 3456777665543
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=24.99 E-value=33 Score=28.96 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=41.2
Q ss_pred hCCCcEEEEeCCCC----CCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHhhhcceeeec
Q 044411 123 VGPIKAMFMDKITN----GLDISTSFQIVTCLQHLAHITDATILISLLQPSP---------ETFDLFDDIILMA 183 (363)
Q Consensus 123 ~~~P~lLlLDEPts----GLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~---------~~~~~~D~v~vL~ 183 (363)
..+|+++++|--+. .-|.....++...|+.++++.+.+++++.|.... .....+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 46889999996542 2245566778888888888889999988754321 1234577777663
No 225
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.95 E-value=91 Score=25.01 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
.++.+.++... +.|..+|.+|..+...+.+++|.++.+..|
T Consensus 110 ~~~~~~~~~ak-~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 110 SEITALIPVLK-RLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp HHHHHHHHHHH-TTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred HHHHHHHHHHH-HCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 44566666544 456666666655666788899988877643
No 226
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=24.48 E-value=90 Score=25.15 Aligned_cols=40 Identities=10% Similarity=-0.011 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
..+.+.++..+ +.|.++|.+|..+...+.+++|.++.+..
T Consensus 124 ~~~~~~~~~ak-~~g~~vi~iT~~~~s~L~~~ad~~l~~~~ 163 (188)
T 1tk9_A 124 PNVLEALKKAK-ELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163 (188)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEEGGGTTHHHHCSEEEEESC
T ss_pred HHHHHHHHHHH-HCCCEEEEEeCCCCcchHHcCCEEEEeCC
Confidence 34555555544 35776666665555678888898776644
No 227
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.29 E-value=97 Score=24.94 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
.++.+.++... +.|..+|.+|..+...+.+++|.++.+..+
T Consensus 101 ~~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 141 (187)
T 3sho_A 101 RDTVAALAGAA-ERGVPTMALTDSSVSPPARIADHVLVAATR 141 (187)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEESCTTSHHHHHCSEEEECCCC
T ss_pred HHHHHHHHHHH-HCCCCEEEEeCCCCCcchhhCcEEEEecCC
Confidence 45566666554 457777776766667888999988887654
No 228
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=24.07 E-value=11 Score=33.06 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=26.5
Q ss_pred hHHHHHHHcCCcccccccccCCcCCCCChHHHHHHHHHHHHhCCCc
Q 044411 82 KTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGEMLVGPIK 127 (363)
Q Consensus 82 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGqrqRv~ia~aL~~~P~ 127 (363)
+++.+-+.+|. +..++. .++||||+.+++..|++|+..|+
T Consensus 54 ~i~~le~~lg~-~L~~R~-----~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 54 AINEMNQLSEH-ILVERA-----TGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHHTS-CCEEEC-----CCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CeEEec-----CCCCCCCceEECHHHHHHHHHHH
Confidence 36777778887 444443 35799999999999999998886
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=23.87 E-value=2.1e+02 Score=32.33 Aligned_cols=71 Identities=4% Similarity=-0.038 Sum_probs=44.5
Q ss_pred HHHHHHh--CCCcEEEEeCCCCCCCH-------------HhHHHHHHHHHH---HhhcCCCEEEEEecCCC---------
Q 044411 117 TTGEMLV--GPIKAMFMDKITNGLDI-------------STSFQIVTCLQH---LAHITDATILISLLQPS--------- 169 (363)
Q Consensus 117 ~ia~aL~--~~P~lLlLDEPtsGLD~-------------~~~~~i~~~l~~---l~~~~g~tii~~~h~~~--------- 169 (363)
.+++.++ .+|+++++|..++=... ...+.+.+.+++ ++++.+.+||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4455543 68999999999876641 112233444444 45667889988765311
Q ss_pred ------hHHHhhhcceeeecCCeE
Q 044411 170 ------PETFDLFDDIILMAEGKI 187 (363)
Q Consensus 170 ------~~~~~~~D~v~vL~~G~i 187 (363)
..+...+|-++.+.....
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEeccc
Confidence 246678898888766543
No 230
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=23.71 E-value=26 Score=29.07 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhh
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 155 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~ 155 (363)
.+|+|+|=||..+|-|-.+...+.+.|..++.
T Consensus 70 ~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~ 101 (187)
T 3k7i_B 70 YNPDIIFKDEENTGADRLMTQRCKDRLNSLAI 101 (187)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHHHHHHHHHH
T ss_pred CCCceEecCccCCCcchhhCHHHHHHHHHHHH
Confidence 48999999999999998888888877777764
No 231
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=23.24 E-value=2.3e+02 Score=21.07 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=38.9
Q ss_pred CCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 124 GPIKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 124 ~~P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
.+++.+++| .-.+.+|+.....+..+.+++.+. |..+.++ .+.+.+.++++.
T Consensus 50 ~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~-g~~l~l~--~~~~~v~~~l~~ 102 (125)
T 2ka5_A 50 KGYNKIFLVLSDVESIDSFSLGVIVNILKSISSS-GGFFALV--SPNEKVERVLSL 102 (125)
T ss_dssp TTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHH-TCEEEEE--CCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHc-CCEEEEE--eCCHHHHHHHHH
Confidence 456777888 567899999999999999988764 6677665 455567666553
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=23.11 E-value=1.1e+02 Score=29.11 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=27.4
Q ss_pred HHHHHHhCCCcEEEEeCCC-CC--CCHHhHHHHHHHHHHH
Q 044411 117 TTGEMLVGPIKAMFMDKIT-NG--LDISTSFQIVTCLQHL 153 (363)
Q Consensus 117 ~ia~aL~~~P~lLlLDEPt-sG--LD~~~~~~i~~~l~~l 153 (363)
+++.+...+++++|+|+|. .+ .|+....++..+++.+
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 4555555689999999997 45 7888777777766655
No 233
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=23.07 E-value=1.1e+02 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecC
Q 044411 145 QIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAE 184 (363)
Q Consensus 145 ~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~ 184 (363)
.+.+.++..+ +.|..+|.+|..+...+.+++|.++.+..
T Consensus 131 ~~~~~~~~ak-~~g~~vI~IT~~~~s~L~~~ad~~l~~~~ 169 (198)
T 2xbl_A 131 NILAAFREAK-AKGMTCVGFTGNRGGEMRELCDLLLEVPS 169 (198)
T ss_dssp HHHHHHHHHH-HTTCEEEEEECSCCCTHHHHCSEEEECSC
T ss_pred HHHHHHHHHH-HCCCeEEEEECCCCCcHHHhCCEEEEeCC
Confidence 3445555443 34666665555555567778887665543
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.97 E-value=1.1 Score=39.42 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEeCC
Q 044411 107 GISGGQKRRLTTGEMLVGPIKAMFMDKI 134 (363)
Q Consensus 107 ~LSGGqrqRv~ia~aL~~~P~lLlLDEP 134 (363)
.|||||+||+.+++++.++|++ +|++
T Consensus 145 ~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 145 EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 4899999999999999999976 5554
No 235
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=22.88 E-value=1.1e+02 Score=23.57 Aligned_cols=43 Identities=5% Similarity=-0.062 Sum_probs=30.9
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCCh
Q 044411 125 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 170 (363)
Q Consensus 125 ~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~ 170 (363)
+..+|++||. ..|++..+..+.+.+.... .+..+|+++..+..
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~--~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH--RPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS--CSSCEEEEESSCHH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC--CCEEEEEECCcCHH
Confidence 5579999999 4688888888888884332 24567777766543
No 236
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.32 E-value=1.1e+02 Score=25.20 Aligned_cols=41 Identities=5% Similarity=0.068 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
..+.+.++...+ .|..+|.+|..+...+.+++|.++.+..+
T Consensus 103 ~~~i~~~~~ak~-~g~~vI~IT~~~~s~La~~ad~~l~~~~~ 143 (200)
T 1vim_A 103 TSVVNISKKAKD-IGSKLVAVTGKRDSSLAKMADVVMVVKGK 143 (200)
T ss_dssp HHHHHHHHHHHH-HTCEEEEEESCTTSHHHHHCSEEEECCSS
T ss_pred HHHHHHHHHHHH-CCCeEEEEECCCCChHHHhCCEEEEECCc
Confidence 556666665544 47777766666666888999988876544
No 237
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=22.20 E-value=19 Score=28.77 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=22.5
Q ss_pred CCCcEEEEeCCCCCC----CHHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 124 GPIKAMFMDKITNGL----DISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 124 ~~P~lLlLDEPtsGL----D~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
..|.+|++||--.-. +......+.+.+..+....+..+|+++.
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 160 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATT 160 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEEC
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecC
Confidence 467899999953211 0111233444454444444556666654
No 238
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.18 E-value=2.2e+02 Score=20.33 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=24.8
Q ss_pred hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 123 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 123 ~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
-.+|+++++|=-..+.|- .++.+.+++ ..+..+|+.+.+..
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~---~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRK---KYDMPIIMLTAKDS 84 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHT---TCCSCEEEEEESSC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHh---cCCCCEEEEECCCC
Confidence 468999999987777653 345555543 23445555444443
No 239
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.65 E-value=2.3e+02 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=25.6
Q ss_pred hCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 123 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 123 ~~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
-.+|+++|+|--..+.|. ..+.+.+++........|++++....
T Consensus 48 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~~~~~~ 91 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDG---LDVIRSLRQNKVANQPKILVVSGLDK 91 (132)
T ss_dssp HTCCSEEEEESCBTTBCH---HHHHHHHHTTTCSSCCEEEEECCSCS
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhcCccCCCeEEEEeCCCh
Confidence 468999999988877764 34455555432112344555544333
No 240
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=21.63 E-value=81 Score=25.90 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcceeeecCC
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDLFDDIILMAEG 185 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~v~vL~~G 185 (363)
.++.+.++...+ .|..+|.+|..+...+.+++|.++.+..+
T Consensus 106 ~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 146 (201)
T 3fxa_A 106 GELLNLIPACKT-KGSTLIGVTENPDSVIAKEADIFFPVSVS 146 (201)
T ss_dssp HHHHTTHHHHHH-HTCEEEEEESCTTSHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHH-cCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence 445566665544 47777777766777888999999888654
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=21.61 E-value=73 Score=32.95 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCCC----------HHhHHHHHHHHHHHhhcCCCEEEEEecCC
Q 044411 116 LTTGEMLVGPIKAMFMDKITNGLD----------ISTSFQIVTCLQHLAHITDATILISLLQP 168 (363)
Q Consensus 116 v~ia~aL~~~P~lLlLDEPtsGLD----------~~~~~~i~~~l~~l~~~~g~tii~~~h~~ 168 (363)
..+..+....|.++++||+...+. ......+.+.+..+....+..+|.+++.+
T Consensus 288 ~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred HHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 344456667899999999955443 22233344444443333345666666554
No 242
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=21.50 E-value=1.8e+02 Score=21.02 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=37.0
Q ss_pred CcEEEEe-CCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCChHHHhhhcc
Q 044411 126 IKAMFMD-KITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFDLFDD 178 (363)
Q Consensus 126 P~lLlLD-EPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~~D~ 178 (363)
++.+++| ...+.+|+.....+....+++.+ .|..+.++ .+.+.+.+.++.
T Consensus 43 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~--~~~~~v~~~l~~ 93 (116)
T 1th8_B 43 IRHIVLNLGQLTFMDSSGLGVILGRYKQIKN-VGGQMVVC--AVSPAVKRLFDM 93 (116)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHH-TTCCEEEE--SCCHHHHHHHHH
T ss_pred CcEEEEECCCCcEEccHHHHHHHHHHHHHHH-hCCeEEEE--eCCHHHHHHHHH
Confidence 6778888 56788999999999999998876 46666655 445566665543
No 243
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=21.26 E-value=3.4e+02 Score=23.90 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHhCCCcEEEEeCCC
Q 044411 118 TGEMLVGPIKAMFMDKIT 135 (363)
Q Consensus 118 ia~aL~~~P~lLlLDEPt 135 (363)
+..+-...|.+||+||--
T Consensus 103 f~~a~~~~~~vl~iDEid 120 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVD 120 (322)
T ss_dssp HHHHHHTSSEEEEEECGG
T ss_pred HHHHHhcCCeEEEechhh
Confidence 345556789999999974
No 244
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.06 E-value=2.7e+02 Score=20.96 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
.+|+++|+|--..+.|. ..+++.|++........||+.+.+..
T Consensus 50 ~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 50 TRPDLIISDVLMPEMDG---YALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp CCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCCCcCCCCEEEEECCCC
Confidence 57999999988877774 44555565532112444555444433
No 245
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.02 E-value=2.5e+02 Score=20.55 Aligned_cols=44 Identities=9% Similarity=0.229 Sum_probs=25.4
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEecCCC
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 169 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h~~~ 169 (363)
.+|+++|+|--..| ......+++.|++.....+..||+.+.+..
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEESCCC
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 57999999976540 344566777777621123444555444443
No 246
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.92 E-value=1.5e+02 Score=24.04 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHhh---hcceeeecCC
Q 044411 144 FQIVTCLQHLAHITDATILISLLQPSPETFDL---FDDIILMAEG 185 (363)
Q Consensus 144 ~~i~~~l~~l~~~~g~tii~~~h~~~~~~~~~---~D~v~vL~~G 185 (363)
..+.+.++..+ +.|..+|.+|..+...+.++ +|.++.+..+
T Consensus 127 ~~~i~~~~~ak-~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 127 ANVIQAIQAAH-DREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred HHHHHHHHHHH-HCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 45566666544 45777777676677788888 9988777543
No 247
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.60 E-value=2.4e+02 Score=20.21 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHhhcCCCEEEEEec
Q 044411 124 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 166 (363)
Q Consensus 124 ~~P~lLlLDEPtsGLD~~~~~~i~~~l~~l~~~~g~tii~~~h 166 (363)
.+|+++|+|--..+.|. ..+.+.+++.....+..||+.+.
T Consensus 46 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 46 RGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEEC
Confidence 67999999988777764 45555565542122445555443
Done!