BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044412
(311 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 168/345 (48%), Positives = 201/345 (58%), Gaps = 80/345 (23%)
Query: 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLR 101
+YA +VKTN N DC+L QFIS S F+ +DY +L + QM+ PNVFVY+A F
Sbjct: 1 MYAVMVKTNTNQDCYLMNQFIS-ALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSY 59
Query: 102 HPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNGFSSPVFVQT 140
P+QA+ Y+ MLRA V T+ VHG VW+NGF S VFVQT
Sbjct: 60 QPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQT 119
Query: 141 AMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPERKFAT 173
++VD YS + ES RV + RLFD MP+R AT
Sbjct: 120 SLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLAT 179
Query: 174 WNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WNT+ID YARL AELLFN+MPA DI SWTTMI YSQNK+FREAL FN+ K G
Sbjct: 180 WNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGI 239
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
D+VTMATV+SACAHLGALDLG+ I Y C SL RSLL
Sbjct: 240 SPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLL 299
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+FFKLREKNL CWNS+ E LA+HG+A EAL MFD+M E ++PNG
Sbjct: 300 MFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNG 344
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + ++GF+ V++ +A++D Y+ S S +F ++ E+ WN++I+ A
Sbjct: 265 IHYYIMQHGFNLDVYIGSALIDMYAKCG----SLDRSLLMFFKLREKNLFCWNSVIEGLA 320
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ Y++ EAL F+K ++ + VT +VLSAC
Sbjct: 321 ---------------------VHGYAE-----EALAMFDKMEREKIKPNGVTFVSVLSAC 354
Query: 243 AHLGALDLGR 252
H G ++ GR
Sbjct: 355 NHAGLIEEGR 364
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 208/373 (55%), Gaps = 83/373 (22%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
P+ SF + + N++K CS+I EL + A+++KTNA DCFL QFIS + + + Y
Sbjct: 130 PSCPSFKQT--LLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFIS-ASFALNSVHY 186
Query: 79 TILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT------------ 122
+ F QM+ PNVFVY+A F +P +A+ Y++ML +L T
Sbjct: 187 PVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACT 246
Query: 123 ----------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------- 158
VH +WK GF S +FVQTA+VD YS E+R+V
Sbjct: 247 FMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTA 306
Query: 159 -------------SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSW 200
+R+LF+EMPER ATWNTMID YARL AELLFN+MP DI SW
Sbjct: 307 MVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISW 366
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--- 257
TTMIT YSQNKQ+++AL +++ + +G D+VTM+TV SACAH+GAL+LG+ I Y
Sbjct: 367 TTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMS 426
Query: 258 -------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
C SL SLL+FFKL +KNL CWN++ E LA+HG+A +AL M
Sbjct: 427 QGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRM 486
Query: 299 FDRMTYENVRPNG 311
F M E + PNG
Sbjct: 487 FAIMEREKIMPNG 499
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D YA+ L+ L+F K+ ++ W +I + + +AL F ++
Sbjct: 437 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 496
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ VT ++LSAC H G +D GR + S+ R + +R + + + L+
Sbjct: 497 PNGVTFISILSACTHAGLVDEGRSRFL---SMTRDYDIRPDIRH-----YGCMVDMLSKS 548
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G+ +EAL + M +E PN
Sbjct: 549 GYLNEALELIKSMEFE---PN 566
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 207/373 (55%), Gaps = 83/373 (22%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
P+ SF + + N++K CS+I EL + A+++KTNA DCFL QFIS + + + Y
Sbjct: 33 PSRPSFKQT--LLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFIS-ASFALNSVHY 89
Query: 79 TILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT------------ 122
+ F QM+ PNVFVY+A F +P +A+ Y++ML +L T
Sbjct: 90 PVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACT 149
Query: 123 ----------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------- 158
VH +WK GF S +FVQTA+VD YS E+R+V
Sbjct: 150 FMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTA 209
Query: 159 -------------SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSW 200
+R+LF+EMPER ATWNTMID Y RL AELLFN+MP DI SW
Sbjct: 210 MLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISW 269
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--- 257
TTMIT YSQNKQ+++AL +++ + +G D+VTM+TV SACAH+GAL+LG+ I Y
Sbjct: 270 TTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMS 329
Query: 258 -------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
C SL SLL+FFKL +KNL CWN++ E LA+HG+A +AL M
Sbjct: 330 QGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRM 389
Query: 299 FDRMTYENVRPNG 311
F M E + PNG
Sbjct: 390 FAIMEREKIMPNG 402
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D YA+ L+ L+F K+ ++ W +I + + +AL F ++
Sbjct: 340 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 399
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ VT ++LSAC H G +D GR + S+ R + +R + + + L+
Sbjct: 400 PNGVTFISILSACTHAGLVDEGRSRFL---SMTRDYDIRPDIRH-----YGCMVDMLSKS 451
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G+ +EAL + M +E PN
Sbjct: 452 GYLNEALELIKSMEFE---PN 469
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/339 (43%), Positives = 178/339 (52%), Gaps = 106/339 (31%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
+A Q+KKCS +KELE VYA+++K NAN DCFL QFI+ C S FH IDY IL F MQEP
Sbjct: 15 LAQQIKKCSMVKELESVYASMIKANANQDCFLMNQFIAAC-SIFHRIDYAILAFTHMQEP 73
Query: 90 NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VH 124
NVFVY+A HP+QA+ YL M++A+V T+ VH
Sbjct: 74 NVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVH 133
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------------------- 158
G +WK GF S VFVQTA+VD Y + K E+RRV
Sbjct: 134 GHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMS 193
Query: 159 -SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQ 212
+R+LFDEMP R A+WN MID Y+RL AELLF++MP DI SWTTMI YSQNK
Sbjct: 194 SARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKH 253
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
L +SL+VFFKLR
Sbjct: 254 ------------------------------------------------LDKSLVVFFKLR 265
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+KNL CWNSI E LA+HG+A EAL MF RM E ++PNG
Sbjct: 266 KKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNG 304
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 190/358 (53%), Gaps = 86/358 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+K+CS+ K LE A ++KT+ N DC L QFI+ CTS F +D + QMQEPNVFV
Sbjct: 780 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTS-FKRLDLAVSTMTQMQEPNVFV 838
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT-------------------VHGQVWKN 130
Y+A F + HP++++ Y+ MLR V ++ + +WK
Sbjct: 839 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKF 898
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------ 184
GF V +QT ++D YS + + E+R+V FDEMPER W TM+ AY R+
Sbjct: 899 GFGFHVKIQTTLIDFYSATGRIREARKV----FDEMPERDDIAWTTMVSAYRRVLDMDSA 954
Query: 185 ------------------------------AELLFNKMPAWDIRSWTTMITSYSQNKQFR 214
AE LFN+MP DI SWTTMI YSQNK++R
Sbjct: 955 NSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYR 1014
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
EA+ F K + G D+VTM+TV+SACAHLG L++G+ + +Y
Sbjct: 1015 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 1074
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C SL R+LLVFF L +KNL CWNSI E LA HGFA EAL MF +M E+V+PN
Sbjct: 1075 DMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1132
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 41/188 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH +NGF V++ +A+VD YS ER
Sbjct: 1054 VHMYTLQNGFVLDVYIGSALVDMYSKCGSL---------------ER------------- 1085
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A L+F +P ++ W ++I + + +EAL F K + + VT +V +AC
Sbjct: 1086 --ALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 1143
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G +D GR +IY RS++ + + N+ + + + G +EAL + M
Sbjct: 1144 THAGLVDEGR--RIY-----RSMIDDYSIV-SNVEHYGGMVHLFSKAGLIYEALELIGNM 1195
Query: 303 TYENVRPN 310
+E PN
Sbjct: 1196 EFE---PN 1200
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 190/359 (52%), Gaps = 86/359 (23%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+K+CS+ K LE A ++KT+ N DC L QFI+ CTS F +D + QMQEPNVFV
Sbjct: 35 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTS-FKRLDLAVSTMTQMQEPNVFV 93
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT-------------------VHGQVWKN 130
Y+A F + HP++++ Y+ MLR V ++ + +WK
Sbjct: 94 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKF 153
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------ 184
GF V +QT ++D YS + + E+R+V FDEMPER W TM+ AY R+
Sbjct: 154 GFGFHVKIQTTLIDFYSATGRIREARKV----FDEMPERDDIAWTTMVSAYRRVLDMDSA 209
Query: 185 ------------------------------AELLFNKMPAWDIRSWTTMITSYSQNKQFR 214
AE LFN+MP DI SWTTMI YSQNK++R
Sbjct: 210 NSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYR 269
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
EA+ F K + G D+VTM+TV+SACAHLG L++G+ + +Y
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C SL R+LLVFF L +KNL CWNSI E LA HGFA EAL MF +M E+V+PN
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNA 388
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 41/189 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH +NGF V++ +A+VD YS ER
Sbjct: 309 VHMYTLQNGFVLDVYIGSALVDMYSKCGSL---------------ER------------- 340
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A L+F +P ++ W ++I + + +EAL F K + + VT +V +AC
Sbjct: 341 --ALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G +D GR +IY RS++ + + N+ + + + G +EAL + M
Sbjct: 399 THAGLVDEGR--RIY-----RSMIDDYSIV-SNVEHYGGMVHLFSKAGLIYEALELIGNM 450
Query: 303 TYENVRPNG 311
+E PN
Sbjct: 451 EFE---PNA 456
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 189/359 (52%), Gaps = 86/359 (23%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+K+CS+ K LE A ++KT+ N DC L QFI+ CTS F +D + QMQEPNVFV
Sbjct: 35 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTS-FKCLDLAVSTMTQMQEPNVFV 93
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT-------------------VHGQVWKN 130
Y+A F + HP++++ Y+ MLR V ++ + +WK
Sbjct: 94 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKF 153
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------ 184
GF V +QT ++D YS + E+R+V FDEMPER W TM+ AY R+
Sbjct: 154 GFGFHVKIQTTLIDFYSATGGIREARKV----FDEMPERDDIAWTTMVSAYRRVLDMDSA 209
Query: 185 ------------------------------AELLFNKMPAWDIRSWTTMITSYSQNKQFR 214
AE LFN+MP DI SWTTMI YSQNK++R
Sbjct: 210 NSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYR 269
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
EA+ F K + G D+VTM+TV+SACAHLG L++G+ + +Y
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C SL R+LLVFF L +KNL CWNSI E LA HGFA EAL MF +M E+V+PN
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNA 388
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 41/189 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH +NGF V++ +A+VD YS ER
Sbjct: 309 VHMYTLQNGFVLDVYIGSALVDMYSKCGSL---------------ER------------- 340
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A L+F +P ++ W ++I + + +EAL F K + + VT +V +AC
Sbjct: 341 --ALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G +D GR +IY RS++ + + N+ + + + G +EAL + M
Sbjct: 399 THAGLVDEGR--RIY-----RSMIDDYSIV-SNVEHYGGMVHLFSKAGLIYEALELIGNM 450
Query: 303 TYENVRPNG 311
+E PN
Sbjct: 451 EFE---PNA 456
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 196/359 (54%), Gaps = 78/359 (21%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
I+ +K+CS+ K LE A ++KT+ +C+L QFI+ C+S F+ +D + QMQ+
Sbjct: 782 ILKQIIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSS-FNRLDLAVSFMTQMQK 840
Query: 89 PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT-------------------VHG 125
PNVFVY+A F + HP++++ FY+ MLR V ++ +
Sbjct: 841 PNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFASGFGESLQA 900
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------------- 158
+WK GF V +QT ++ YS S + E+R+V
Sbjct: 901 HIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDS 960
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+ L ++MPE+ ATWN +ID Y RL AE LFN+MP DI SWTTMI YS+NK++
Sbjct: 961 ANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRY 1020
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------- 257
REA+ F K + G D+VTM+TV+SACAHLG L++G+ + +Y
Sbjct: 1021 REAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSAL 1080
Query: 258 ------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C SL R+LLVFF L +KNL CWNSI E LA HGFA EAL MF +M E+V+PN
Sbjct: 1081 VDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1139
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 41/188 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH +NGF V++ +A+VD YS ER
Sbjct: 1061 VHMYTVQNGFVLDVYIGSALVDMYSKCGSL---------------ER------------- 1092
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A L+F +P ++ W ++I + + +EAL F K + + VT +V +AC
Sbjct: 1093 --ALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTAC 1150
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G ++ GR +IY RS++ + + N+ + + + G +EAL + M
Sbjct: 1151 THAGLVEEGR--RIY-----RSMIDDYSIV-SNVEHYGCMVHLFSKAGLIYEALELIGSM 1202
Query: 303 TYENVRPN 310
+E PN
Sbjct: 1203 EFE---PN 1207
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 149/244 (61%), Gaps = 54/244 (22%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV----------------------- 158
VHG +WK GF S VFVQTA+VD Y + K E+RRV
Sbjct: 31 AVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTG 90
Query: 159 ----SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
+R+LFDEMP R A+WN MID Y+RL AELLF++MP DI SWTTMI YSQ
Sbjct: 91 DMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQ 150
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
NKQFREAL FN+ + +G D+VTMAT++SACAHLGALDLG+ I +Y
Sbjct: 151 NKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYI 210
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C SL +SL+VFFKLR+KNL CWNSI E LA+HG+A EAL MF RM E +
Sbjct: 211 GSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKI 270
Query: 308 RPNG 311
+PNG
Sbjct: 271 KPNG 274
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID YA+ L +F K+ ++ W ++I + + EAL F++ ++
Sbjct: 212 SALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIK 271
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ VT +VL AC H G ++ GR
Sbjct: 272 PNGVTFISVLGACTHAGLVEEGR 294
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 174/341 (51%), Gaps = 80/341 (23%)
Query: 50 IVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQ 105
++KTN DCFL QFIS C S I+ F +Q PNV V++A + Q
Sbjct: 1 MIKTNTTQDCFLVNQFISAC-SNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQ 59
Query: 106 AIAFYLYMLRAEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVD 144
A+ Y++MLR V+ T+ VHG VWK+GF S VFVQT +++
Sbjct: 60 ALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIE 119
Query: 145 NYSYSNKFFESRRV---------------------------SRRLFDEMPERKFATWNTM 177
YS SRRV + RLFDEMPE+ ATWN M
Sbjct: 120 FYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAM 179
Query: 178 IDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
ID Y +L AE LFN+MPA DI SWTTM+ YS+NK+++E + F+ G D+
Sbjct: 180 IDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDE 239
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
VTM TV+SACAHLGAL LG+ + +Y C S+ +LLVF+K
Sbjct: 240 VTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYK 299
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L+ KNL CWN I + LA HG+ EAL MF M + +RPN
Sbjct: 300 LQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNA 340
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+++ID YA+ +A L+F K+ ++ W +I + + EAL F + ++
Sbjct: 278 SSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIR 337
Query: 230 SDQVTMATVLSACAHLGALDLGRG-----IQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284
+ VT ++L+AC H G ++ GR +Q YC + + + + +
Sbjct: 338 PNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIA-------------PQVEHYGCMVD 384
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
L+ G +AL M MT V PN
Sbjct: 385 LLSKAGLLEDALEMIRNMT---VEPN 407
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 144/244 (59%), Gaps = 54/244 (22%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV----------------------- 158
VHG VW++G S VFVQTA+VD YS + ES++V
Sbjct: 31 VVHGHVWRHGLESHVFVQTALVDFYSTVGRIIESKKVFDEMPERDIFAWATMVTSLARIG 90
Query: 159 ----SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
+RRLFD MPE+ A WNT+I Y++L AE LF++M DI SWTTM+ Y+Q
Sbjct: 91 DMSSARRLFDMMPEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQ 150
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
NK+F EAL FN+ K+G D+VTMATV+SACAHLGALDLG+ I +Y
Sbjct: 151 NKKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYI 210
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C SL RSLLVFFKL+EKNL CWNS+ E LA HG+A EAL MF +M E +
Sbjct: 211 GSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKI 270
Query: 308 RPNG 311
+PNG
Sbjct: 271 KPNG 274
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L A L +H V +NGF V++ ++++D Y+ S V F ++ E+
Sbjct: 186 LGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLV----FFKLQEKNLFC 241
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
WN++I+ A + +EAL+ F K + + V
Sbjct: 242 WNSVIEGLA--------------------------AHGYAKEALEMFRKMGREKIKPNGV 275
Query: 234 TMATVLSACAHLGALDLGRGIQ 255
T +VL+ACAH G ++ G ++
Sbjct: 276 TFISVLNACAHAGLVEEGLALR 297
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 170/354 (48%), Gaps = 67/354 (18%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
P+S + + L+ C+S ++L V+A V+ + + +LA Q + C + + +
Sbjct: 5 PSSATRQVEDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGR-VAH 63
Query: 79 TILVFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYMLR------------------ 115
VF Q++EPN+ +++A + RH L AI Y+ MLR
Sbjct: 64 ATRVFSQVREPNLHLHNAMIKAYAQNHRH-LDAITVYIRMLRRRPFPWISCTGGDRFTYP 122
Query: 116 ----------AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165
A L VHG V ++G S VQ ++++ Y+ + ++R++FD
Sbjct: 123 FLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLV----LARKVFDG 178
Query: 166 MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
M ER +WNT+I A+ARL ++ +FN MP + SWT +++ Y+ F A++AF
Sbjct: 179 MQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF 238
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR--------------------- 259
+ G D V++ VL ACA LGAL+LGR I YC
Sbjct: 239 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKC 298
Query: 260 -SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPNG 311
+ ++L +F + EK+++ W+++ LA HG A EA+ +F M + V+PNG
Sbjct: 299 GCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNG 352
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R+ N +++ YA+ + LFN M D+ SW+TM+ + + + +EA+ F +
Sbjct: 283 RETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEM 342
Query: 224 KKSGT-GSDQVTMATVLSACAHLGALDLG 251
++ GT + +T +LSAC+H G LD G
Sbjct: 343 ERQGTVKPNGITFVGLLSACSHAGLLDEG 371
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 165/331 (49%), Gaps = 61/331 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVF 92
L+ CS+ ++L+ ++A +++T+ D F A + I+FC S + + Y I V Q+Q PN+F
Sbjct: 24 LECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLF 83
Query: 93 VYHAF----SSLRHPLQAIAFYLYMLRAEVLLTTV---------------------HGQV 127
+Y+A S+ +P + +Y+ LR +L + HGQ
Sbjct: 84 IYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQA 143
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRL--FDEMPERKFATWNTMIDAY---- 181
K+GF +VQ ++V Y+ +R V +R+ FD +W MI Y
Sbjct: 144 IKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFD------VVSWTCMIAGYHRCG 197
Query: 182 -ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
A+ A LF++MP ++ +W+TMI+ Y++N F +A++ F + G +++ M V+S
Sbjct: 198 DAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVIS 257
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
+CAHLGAL +G Y C ++ ++++VF +L EK++LC
Sbjct: 258 SCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLC 317
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRP 309
W ++ LA+HG+A +AL F M + P
Sbjct: 318 WTALIAGLAMHGYAEKALWYFSEMAKKGFVP 348
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YAR A ++F ++P D+ WT +I + + +AL F++ K G
Sbjct: 289 AVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVP 348
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
+T VL+AC+H G ++ RG++I+
Sbjct: 349 RDITFTAVLTACSHAGMVE--RGLEIF 373
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 65/338 (19%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
+L+ C + ++L V+ +V+ + +LA Q + C + + + VF Q+++PN+
Sbjct: 20 RLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNA-HRRVTHAARVFAQVRDPNLH 78
Query: 93 VYHA----FSSLRHPLQAIAFYLYMLRAEV----------------------------LL 120
+++A ++ A+A Y+ MLR L
Sbjct: 79 LHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELG 138
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VH V ++G S VQ ++++ Y+ + ++ ++FDEM ER +WN +I A
Sbjct: 139 KQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLA----LAHKVFDEMRERDVVSWNMLISA 194
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ARL ++ LFN MP I +WT M++ Y+ + A+DAF + G D V++
Sbjct: 195 HARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSI 254
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLRE 273
VL ACA LGAL+LGR I YC+ G ++L +F + +
Sbjct: 255 VAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMAD 314
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
K+++ W+++ LA HG AHEA+ +F M E VRPN
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPN 352
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-T 228
N +++ YA+ + LF+ M D+ SW+T+I + + + EA+ F + +K G
Sbjct: 290 NALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKV 349
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+ +T +LSAC++ G +D G
Sbjct: 350 RPNVITFVGLLSACSYAGLVDEG 372
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 65/338 (19%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
+L+ C + ++L V+ +V+ + +LA Q + C + + + VF Q+++PN+
Sbjct: 20 RLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNA-HRRVTHAARVFAQVRDPNLH 78
Query: 93 VYHA----FSSLRHPLQAIAFYLYMLRAEV----------------------------LL 120
+++A ++ A+A Y+ MLR L
Sbjct: 79 LHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELG 138
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VH V ++G S VQ ++++ Y+ + ++ ++FDEM ER +WN +I A
Sbjct: 139 KQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLA----LAHKVFDEMRERDVVSWNMLISA 194
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ARL ++ LFN MP I +WT M++ Y+ + A+DAF + G D V++
Sbjct: 195 HARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSI 254
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLRE 273
VL ACA LGAL+LGR I YC+ G ++L +F + +
Sbjct: 255 VAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMAD 314
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
K+++ W+++ LA HG AHEA+ +F M E VRPN
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPN 352
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-T 228
N +++ YA+ + LF+ M D+ SW+T+I + + + EA+ F + +K G
Sbjct: 290 NALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKV 349
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+ +T +LSAC++ G +D G
Sbjct: 350 RPNVITFVGLLSACSYAGLVDEG 372
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 160/331 (48%), Gaps = 59/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC---TSRFHFIDYTILVFPQMQEPN 90
L+ CS + L+ ++A +++T+ D F A + I+FC +S IDY +F Q+Q PN
Sbjct: 24 LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83
Query: 91 VFVYHAF----SSLRHPLQAIAFYLYMLRAEVLL---------------------TTVHG 125
+F+++A S ++P QA FY+ R +L + HG
Sbjct: 84 LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ K+GF V+VQ ++V Y+ F + +F M +W +MI + +
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYAT----FGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCG 199
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ LF++MP ++ +W+TMI+ Y+QN F +A++ F + G +++ M +V+S
Sbjct: 200 DVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVIS 259
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
+CAHLGAL+LG Y C S+ +++ VF L E++ L
Sbjct: 260 SCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLS 319
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRP 309
W ++ LA+HG++ +L F M + P
Sbjct: 320 WTALIAGLAMHGYSERSLKYFATMVEAGLTP 350
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YAR + +F +P D SWT +I + + +L F ++G
Sbjct: 292 LVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPR 351
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+T VLSAC+H G ++ RG QI+ S+ R V E L + + + L G
Sbjct: 352 DITFTAVLSACSHGGLVE--RGFQIF-ESMKRDHRV-----EPRLEHYGCMVDLLGRAGK 403
Query: 292 AHEALGMFDRMTYENVRPN 310
EA +M V+PN
Sbjct: 404 LEEAERFVLKMP---VKPN 419
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
L++CS+++EL ++ ++KT LD A + ++FC S + Y VF ++ PN F
Sbjct: 25 LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTF 84
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQV 127
+++ +S+ + P +A+ Y +ML V LL +H +
Sbjct: 85 MWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHI 144
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GF S ++ ++++ YS S + +R LFD++ +R +WN+MID Y + E+
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDI----KSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+FN MP +I SWT+MI+ + +EAL+ F++ + +G D V + + L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LG LD G+ I Y C L ++ VF K+ EK + W
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWT 320
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ AIHG EAL F +M V PN
Sbjct: 321 AMISGYAIHGRGREALEWFMKMQTAGVEPN 350
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ +L +F KM + WT MI+ Y+ + + REAL+ F K + +G +
Sbjct: 291 LIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPN 350
Query: 232 QVTMATVLSACAHLG 246
Q+T +L+AC+H G
Sbjct: 351 QMTFTGILTACSHAG 365
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
L++CS+++EL ++ ++KT LD A + ++FC S + Y VF ++ PN F
Sbjct: 25 LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTF 84
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQV 127
+++ +S+ + P +A+ Y +ML V LL +H +
Sbjct: 85 MWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHI 144
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GF S ++ ++++ YS S + +R LFD++ +R +WN+MID Y + E+
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDI----KSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+FN MP +I SWT+MI+ + +EAL+ F++ + +G D V + + L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LG LD G+ I Y C L ++ VF K+ EK + W
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWT 320
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ AIHG EAL F +M V PN
Sbjct: 321 AMISGYAIHGRGREALEWFMKMQTAGVEPN 350
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ +L +F KM + WT MI+ Y+ + + REAL+ F K + +G +
Sbjct: 291 LIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPN 350
Query: 232 QVTMATVLSACAHLG 246
Q+T +L+AC+H G
Sbjct: 351 QMTFTGILTACSHAG 365
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 58/330 (17%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY 94
K C+S+K+L+ ++A ++KT D A + ++FCTS I+Y LVF Q++ PN+FV+
Sbjct: 4 KNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVW 63
Query: 95 H----AFSSLRHPLQAIAFYLYML-------------------RAEVLL----TTVHGQV 127
+ FS P AI+ ++ M+ A++ L +HG+V
Sbjct: 64 NTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRV 123
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G + F+Q +++ Y E++R+ FD TWNTMI A+ E+
Sbjct: 124 IKLGLENDQFIQNTILNMYVNCGFLGEAQRI----FDGATGFDVVTWNTMIIGLAKCGEI 179
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+KM + SW +MI+ Y + +F EA++ F++ ++ G + TM ++L+AC
Sbjct: 180 DKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNAC 239
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LGAL G I Y C S+ ++L VF +K L CWN
Sbjct: 240 ACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWN 299
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ LA+ G +EA+ +F ++ N++P+
Sbjct: 300 SLILGLAMSGRGNEAVRLFSKLESSNLKPD 329
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + KN F+ V TA++D YS ++ +V F P++ + WN++I A
Sbjct: 251 IHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQV----FKSAPKKGLSCWNSLILGLA 306
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ + EA+ F+K + S D V+ VL+AC
Sbjct: 307 --------------------------MSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTAC 340
Query: 243 AHLGALD 249
H G +D
Sbjct: 341 NHAGMVD 347
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 65/338 (19%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
+L+ C + ++L V+ +V+ + +LA Q + C + + + VF Q+++PN+
Sbjct: 20 RLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNA-HRRVTHAARVFAQVRDPNLH 78
Query: 93 VYHA----FSSLRHPLQAIAFYLYMLRAEV----------------------------LL 120
+++A ++ A+A Y+ MLR L
Sbjct: 79 LHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELG 138
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VH V ++G S VQ ++++ Y+ + ++ ++FDEM ER +WN +I A
Sbjct: 139 KQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLA----LAHKVFDEMRERDVVSWNMLISA 194
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ARL ++ LFN MP I +WT M++ Y+ + A+DAF + G D V++
Sbjct: 195 HARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSI 254
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLRE 273
VL ACA LG L+LGR I YC+ G ++L +F + +
Sbjct: 255 VAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMAD 314
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
K+++ W+++ LA HG AHEA+ +F M E VRPN
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPN 352
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-T 228
N +++ YA+ + LF+ M D+ SW+T+I + + + EA+ F + +K G
Sbjct: 290 NALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKV 349
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+ +T +LSAC++ G +D G
Sbjct: 350 RPNVITFVGLLSACSYAGLVDEG 372
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 166/338 (49%), Gaps = 59/338 (17%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTN-ANLDCFLAKQFISFCTSRFHFIDYTILVFPQM 86
H + + L KC SI EL+ ++A ++ + D F++K S I+Y+ VF Q+
Sbjct: 15 HNLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQL 74
Query: 87 QEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEV----------------LL-----T 121
P +F + +S+ ++P+Q+++ +L MLR V LL
Sbjct: 75 SSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGV 134
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VH + K G S F+Q +++ Y+ +++V FD + ++ +WN+M+D Y
Sbjct: 135 SVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKV----FDSIQQKNVVSWNSMLDGY 190
Query: 182 ARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ E++ F M D+RSW+++I Y + ++ EA+ F K + +G +++VTM
Sbjct: 191 AKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMV 250
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL--R 272
+V ACAH+GAL+ GR I Y C ++ +LL+F ++
Sbjct: 251 SVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKS 310
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++L WN++ LA HG E+L +F M + P+
Sbjct: 311 QTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPD 348
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 172/389 (44%), Gaps = 89/389 (22%)
Query: 2 FVKYVRAIITSFK-KNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCF 60
F + + + T FK KNS ++S L+ C S ++L+ ++A ++ T D F
Sbjct: 10 FWRQITTVTTKFKSKNSNYKTLS---------ALQSCKSTEDLKKIHAQLIITGQIKDTF 60
Query: 61 LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFY------ 110
+A + + IDY VF + P+ + + F ++P +A+ FY
Sbjct: 61 IATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQR 120
Query: 111 ---------LYMLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155
L++L+A L + VHG++ K GF VF + A++ Y ++
Sbjct: 121 GVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDA 180
Query: 156 RRV---------------------------SRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+ +RRLF EMPER +WN ++ Y++L +
Sbjct: 181 HLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVD 240
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF+ MP D+ SW +MI++Y QN + EAL+ F + +G +D + + ++LSACA
Sbjct: 241 IARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACA 300
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+GALD+GR I Y C + + VF + KNL WN+
Sbjct: 301 QIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNA 360
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LAIHG AL +F +M V PN
Sbjct: 361 MLSGLAIHGHGFAALELFKQMESTGVGPN 389
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ + +FN MP ++ SW M++ + + AL+ F + + +G G +
Sbjct: 330 LVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPN 389
Query: 232 QVTMATVLSACAHLGALDLGRG---------------------IQIYCR----SLGRSLL 266
+T VLSAC+H+G+++ G + I CR + + ++
Sbjct: 390 DITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMI 449
Query: 267 VFFKLREKNLLCWNSITEALAIHGF---AHEALGMFDRMTYEN 306
L E N++ W ++ A +HG+ + +G ++ E+
Sbjct: 450 RTMPL-EPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSED 491
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 158/335 (47%), Gaps = 58/335 (17%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQE 88
I L C ++K+L ++A + T D F+A + +SF H I Y +F ++++
Sbjct: 38 ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97
Query: 89 PNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVH-------------------- 124
P++F+ + A++ +P+ A+ FY M + V+ VH
Sbjct: 98 PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157
Query: 125 --GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
V+K G+SS V V +V Y+ S ES + +FD PE A+WN MI Y
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYA-SCGLIESAGL---VFDRTPECDGASWNIMIGGYL 213
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A +F MP D+ SW+ MI Y Q +F+E L F ++ +
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVN 273
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
LSACAHLGA++ G+ I+ Y C S+ R+L VF K++EKN
Sbjct: 274 ALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKN 333
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+L W+++ LAI+G +AL +F +M + V+PN
Sbjct: 334 VLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPN 368
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ + +F+KM ++ +W+ MI + N Q ++AL+ F++ + G +
Sbjct: 309 LIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPN 368
Query: 232 QVTMATVLSACAHLGALDLG 251
+VT +L+AC+H +D G
Sbjct: 369 EVTFIGILNACSHSKLVDEG 388
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 162/336 (48%), Gaps = 64/336 (19%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC----TSRFH----FIDYTILVFPQ 85
L+ CSS +L+ ++ +++T+ D F+A + ++ S FH + Y +F Q
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQ 78
Query: 86 MQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAE---------------------VLL 120
+Q PN+FV++ FS+ P +A FY ML++ V+
Sbjct: 79 IQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVG 138
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
H Q+ + GF + V+V+ ++V Y+ + R+F +MP R +W +M+
Sbjct: 139 EQTHSQIVRFGFQNDVYVENSLVHMYANCGLI----AAAGRIFGQMPFRDVVSWTSMVAG 194
Query: 181 YARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y + A +F++MP ++ +W+ MI Y++N F +A+D F K+ G +++ M
Sbjct: 195 YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
+V+S+CAHLGAL+ G Y C + +++ VF +L +
Sbjct: 255 VSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPD 314
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
K+ L W+SI + LA+HG AH+A+ F +M P
Sbjct: 315 KDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSP 350
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y R E+ +F ++P D SW+++I + + +A+ F++ + G
Sbjct: 291 ALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSP 350
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+T+ VLSAC+H G +D +G++IY ++ R + E L + I + L G
Sbjct: 351 RDITLTAVLSACSHGGLVD--KGLEIY-ENMKRDYGI-----EPRLEHYGCIVDMLGRAG 402
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA +M V+PN
Sbjct: 403 KLAEAENFILKMP---VKPN 419
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 60/332 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK C I +L+ ++A +VK + + FL + + C + H + Y L+F Q+ PN+F
Sbjct: 17 LKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGH-VSYATLLFKQLLHPNIFT 75
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEV------------------------LLTTVHG 125
Y+A ++ RH AI+ ++ ML L VHG
Sbjct: 76 YNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHG 135
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
V+K G + A++D Y+ KF + + +F+EM R +WN++I Y +L
Sbjct: 136 LVYKFGADFHCITENALIDMYT---KFGDLTNACK-VFEEMSHRDVISWNSLIFGYVKLG 191
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ LF+ MP I SWTTMIT Y + + +ALD F + + G D++++ VL
Sbjct: 192 QMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLP 251
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
ACA LGAL++G+ I +Y C + + +F +L EK+++
Sbjct: 252 ACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVIS 311
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W+++ LA HG +EA+ +F+ M V PN
Sbjct: 312 WSTMIGGLANHGKGYEAIQLFEEMCKVRVAPN 343
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
RK N +I+ YA+ + LF+++ D+ SW+TMI + + + EA+ F +
Sbjct: 276 RKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEM 335
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
K +++T VL AC+H G D G
Sbjct: 336 CKVRVAPNEITFLGVLLACSHTGLWDEG 363
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 169/364 (46%), Gaps = 70/364 (19%)
Query: 13 FKKNSFPTSVSFIR--IHIIANQ---------LKKCSSIKELECVYATIVKTNANLDCFL 61
F +SFP S R IH + Q L+ +S EL V+A I+KTNA L
Sbjct: 3 FALSSFPIPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILP 62
Query: 62 AKQFISFC--TSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLR 115
+ C T FH+ I + Q+P FV++ A + P+ AI + + +
Sbjct: 63 LTRVGLVCAFTPSFHYAQ-QIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQ 121
Query: 116 AEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+V T +HG V K GF S +++Q +V Y+ + E
Sbjct: 122 YDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+R LF++MP+R TWN MI + + LF++MP ++RSWT+MI Y Q
Sbjct: 182 ARL----LFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQ 237
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
+ +EA+ F K +++G ++VT+ VL+ACA LGALDLG I Y
Sbjct: 238 CGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRI 297
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C L + VF ++ E+ ++ W+++ LA+HG A EAL +F M+ +
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI 357
Query: 308 RPNG 311
PNG
Sbjct: 358 EPNG 361
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+R NT+ID Y + L +F +M + SW+ MI + + + EAL F+
Sbjct: 292 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 351
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
+ G + VT +L AC+H+G + GR + S+ R + ++ + +
Sbjct: 352 MSQVGIEPNGVTFIGLLHACSHMGLISEGRR---FFASMTRDYGIIPQIEH-----YGCM 403
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ L+ G HEA M ++PNG
Sbjct: 404 VDLLSRAGLLHEAHEFILNMP---MKPNG 429
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 161/336 (47%), Gaps = 59/336 (17%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQE 88
+ N L KC+S+ EL+ ++A ++ + D + +SF S I+Y+ V +
Sbjct: 17 LINILDKCNSMLELKKIHALVITLGLSQDEPFVSKILSFSALSDSGNINYSCWVLFSLLN 76
Query: 89 PNVF----VYHAFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTV 123
P +F V +S ++P +I+ ++ ML+ V L ++
Sbjct: 77 PTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSI 136
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K+GF S F+ ++V Y+ F +R +FD MP + +WN+M+D A+
Sbjct: 137 HAHIIKHGFESDRFISNSLVHMYAS----FGDISCARYVFDGMPVKNLVSWNSMVDGSAK 192
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
LA LF+ MP D+ SW+++I Y +N + +A+ F+K + SG ++VTM +V
Sbjct: 193 CGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSV 252
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK-- 274
L ACAHLGALD GR + Y C ++ + VF + +
Sbjct: 253 LCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIPAELS 312
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++L WN++ LA HG E+L +F M + V+P+
Sbjct: 313 DVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPD 348
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+++D YA+ + +F +PA D+ W MI + + +E+LD F + G
Sbjct: 286 SLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGV 345
Query: 229 GSDQVTMATVLSACAHLG 246
D++T ++L ACAH G
Sbjct: 346 KPDEITYLSLLHACAHGG 363
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 60/332 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C I EL+ ++A IVK + + FL + + C + H +DY ++F Q++ PNVF
Sbjct: 14 LRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSH-VDYATMIFQQLENPNVFS 72
Query: 94 YHAF-----SSLRHPLQAIAFYLYMLRAEV----------------------LLTTVHGQ 126
Y+A + +HPL AI + ML + L VH
Sbjct: 73 YNAIIRTYTHNHKHPL-AITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAH 131
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V K G + + A++D Y+ + +V ++EM ER +WN++I + RL +
Sbjct: 132 VCKFGPKTHAITENALIDMYTKCGDMSGAYQV----YEEMTERDAVSWNSLISGHVRLGQ 187
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ +F++MP I SWTTMI Y++ + +AL F + + G D++++ +VL A
Sbjct: 188 MKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPA 247
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA LGAL++G+ I Y C + + +F ++ EK+++ W
Sbjct: 248 CAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISW 307
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+++ LA HG + A+ +F+ M V PNG
Sbjct: 308 STMIGGLANHGKGYAAIRVFEDMQKAGVTPNG 339
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
+ +N +++ YA+ + LFN+M D+ SW+TMI + + + A+ F
Sbjct: 271 KNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDM 330
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
+K+G + VT VLSACAH G + G
Sbjct: 331 QKAGVTPNGVTFVGVLSACAHAGLWNEG 358
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 169/364 (46%), Gaps = 70/364 (19%)
Query: 13 FKKNSFPTSVSFIR--IHIIANQ---------LKKCSSIKELECVYATIVKTNANLDCFL 61
F +SFP S R IH + Q L+ +S EL V+A I+KTNA L
Sbjct: 3 FALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILP 62
Query: 62 AKQFISFC--TSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLR 115
+ C T FH+ I + Q+P FV++ A + P+ AI + + +
Sbjct: 63 LTRVGLVCAFTPSFHYAQ-QIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQ 121
Query: 116 AEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+V T +HG V K GF S +++Q +V Y+ + E
Sbjct: 122 YDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+R LF++MP+R TWN MI + + LF++MP ++RSWT+MI Y Q
Sbjct: 182 ARL----LFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQ 237
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
+ +EA+ F K +++G ++VT+ VL+ACA LGALDLG I Y
Sbjct: 238 CGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRI 297
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C L + VF ++ E+ ++ W+++ LA+HG A EAL +F M+ +
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI 357
Query: 308 RPNG 311
PNG
Sbjct: 358 EPNG 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+R NT+ID Y + L +F +M + SW+ MI + + + EAL F+
Sbjct: 292 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 351
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
+ G + VT +L AC+H+G + GR + S+ R + ++ + +
Sbjct: 352 MSQVGIEPNGVTFIGLLHACSHMGLISEGRR---FFASMTRDYGIIPQIEH-----YGCM 403
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ L+ G HEA M ++PNG
Sbjct: 404 VDLLSRAGLLHEAHEFILNMP---MKPNG 429
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 146/289 (50%), Gaps = 58/289 (20%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV------------- 118
+ Y +F Q+ +P+V++Y+ FSS+ HP + Y M
Sbjct: 32 LPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPA 91
Query: 119 ---LLTTVHGQVW-----KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L GQ+ K+GF+S +F TA++D Y+ R +R+LFDEMP R
Sbjct: 92 CASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGML----RSARQLFDEMPVRD 147
Query: 171 FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTK 224
TWN++I YAR + LFNKMP ++ SWT +I+ Y+QN ++ +AL+ F
Sbjct: 148 IPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLEN 207
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG---------------------- 262
+ GT ++V++A+VL AC+ LGALD+G+ I+ Y R+ G
Sbjct: 208 EKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIE 267
Query: 263 RSLLVFFKLREKNLLC-WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF ++ K LC WN++ LA+HG +AL ++D+M +RP+
Sbjct: 268 EAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 146/289 (50%), Gaps = 58/289 (20%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV------------- 118
+ Y +F Q+ +P+V++Y+ FSS+ HP + Y M
Sbjct: 32 LPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPA 91
Query: 119 ---LLTTVHGQVW-----KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L GQ+ K+GF+S +F TA++D Y+ R +R+LFDEMP R
Sbjct: 92 CASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGML----RSARQLFDEMPVRD 147
Query: 171 FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTK 224
TWN++I YAR + LFNKMP ++ SWT +I+ Y+QN ++ +AL+ F
Sbjct: 148 IPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLEN 207
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG---------------------- 262
+ GT ++V++A+VL AC+ LGALD+G+ I+ Y R+ G
Sbjct: 208 EKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIE 267
Query: 263 RSLLVFFKLREKNLLC-WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF ++ K LC WN++ LA+HG +AL ++D+M +RP+
Sbjct: 268 EAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 161/327 (49%), Gaps = 62/327 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF------IDYTILVFPQMQ 87
L+ CSS +L+ ++ +++T+ D F+A + ++ C F + Y +F Q+Q
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78
Query: 88 EPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTV-------------------- 123
PN+FV++ FS+ P +A FY ML++ + +
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138
Query: 124 -HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
H Q+ + GF + V+V+ ++V + Y+N F + + R+F +M R +W +M+ Y
Sbjct: 139 THSQIVRFGFQNDVYVENSLV--HMYANCGFIA--AAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A +F++MP ++ +W+ MI Y++N F +A+D F K+ G +++ M +
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V+S+CAHLGAL+ G Y C + +++ VF L E +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRM 302
L W+SI + LA+HG AH+A+ F +M
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQM 341
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D + R ++ +F +P D SW+++I + + +A+ F++ G
Sbjct: 289 ALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIP 348
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
VT VLSAC+H G ++ +G++IY
Sbjct: 349 RDVTFTAVLSACSHGGLVE--KGLEIY 373
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 159/334 (47%), Gaps = 61/334 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH--FIDYTILVFPQMQEPNV 91
L++CSS+ + + V+A I N ++ + + T+ H Y L+F Q+ PN
Sbjct: 15 LERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNP 74
Query: 92 FVYHAF---SSLRHPL-QAIAFYLYM---------------------LRAEVLLTTVHGQ 126
F + A +LR PL QA++FY M +R L +H Q
Sbjct: 75 FAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQ 134
Query: 127 -VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ GFSS ++V A++D Y S R +R +FDEMPER +W +I AY R+
Sbjct: 135 TLLLGGFSSDLYVNNAVIDMYVKCG----SLRCARMVFDEMPERDVISWTGLIVAYTRIG 190
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ LF+ +P D+ +WT M+T Y+QN +AL+ F + + G D+VT+ V+S
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVIS 250
Query: 241 ACAHLGA-------------LDLGRG---------IQIY--CRSLGRSLLVFFKLREKNL 276
ACA LGA G G I +Y C ++ + VF +RE+N+
Sbjct: 251 ACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNV 310
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++S+ AIHG A A+ +F M V+PN
Sbjct: 311 FSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPN 344
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 42/155 (27%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPE------------------RKFATW------- 174
TAMV Y+ + ++ V RRL DE E K+A W
Sbjct: 211 TAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAES 270
Query: 175 ------------NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
+ +ID Y++ + +F M ++ S+++MI ++ + + R A+
Sbjct: 271 SGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAI 330
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
F ++G + VT VL+AC+H G +D G+
Sbjct: 331 KLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQ 365
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 58/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF--HFIDYTILVFPQMQEPNV 91
L++CS +EL+ ++A ++KT D + +F+SFC S F+ Y +VF P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEV---------LL------------TTVHGQ 126
F+++ FS P +++ Y ML + LL T +H Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ K G+ + V+ +++++Y+ + F +++ LFD +PE +WN++I Y + +
Sbjct: 141 ITKLGYENDVYAVNSLINSYAVTGNF----KLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF KM + SWTTMI+ Y Q +EAL F++ + S D V++A LSA
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA LGAL+ G+ I Y C + +L VF +++K++ W
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW 316
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ A HG EA+ F M ++PN
Sbjct: 317 TALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ E+ +F + +++WT +I+ Y+ + REA+ F + +K G +
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 232 QVTMATVLSACAHLGALDLGRGI 254
+T VL+AC++ G ++ G+ I
Sbjct: 348 VITFTAVLTACSYTGLVEEGKLI 370
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 59/332 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L KC S+ EL+ ++A + + + + +SF S IDY+ VF Q+ P +F
Sbjct: 21 LDKCKSMLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFSQISSPTIF 80
Query: 93 ----VYHAFSSLRHPLQAIAFYLYMLRAEVL---LT------------------TVHGQV 127
+ +S+ ++P+ +++ +L MLR V LT +VH Q+
Sbjct: 81 SWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQI 140
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G S F+Q +++ Y+ + +V F+ M + +WN+M+D YA+ E+
Sbjct: 141 IKTGHESDRFIQNSLIHMYASCGNIMWAHKV----FESMQGKNLVSWNSMLDGYAKCGEM 196
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+F M D+RSW++ I Y + ++REA+ F K + G +++VTM +VLSAC
Sbjct: 197 AMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSAC 256
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL--REKNLLC 278
AHLGAL GR + Y C ++ +L VF + + ++
Sbjct: 257 AHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFI 316
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ LA HG E+L +F M +R +
Sbjct: 317 WNAMIGGLATHGLVEESLKLFKEMQMAGIRSD 348
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYAR---LAELLFN----KMPAWDIRSWTTMITS 206
+ R + + + D + +++D YA+ + E LF D+ W MI
Sbjct: 264 KGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGG 323
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+ + E+L F + + +G SD++T +L+ACAH G
Sbjct: 324 LATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGG 363
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 63/349 (18%)
Query: 18 FPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFI 76
+S S + I+ +Q C S+ EL ++ ++ + + Q +SF S +
Sbjct: 2 LKSSSSLVAKSILRHQ---CKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDV 58
Query: 77 DYTILVFPQMQEPNV----FVYHAFSSLRHPLQAIAFYLYMLRAEVLLT----------- 121
DY ++ +P FV FS+ R+P ++I+ Y+ MLR +L
Sbjct: 59 DYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSS 118
Query: 122 ----------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
++H V K+G +F+ ++ Y F + +R+LFDEMP +
Sbjct: 119 SRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGS----FRDQASARKLFDEMPHKNL 174
Query: 172 ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
TWN+++DAYA+ A L+F++M D+ +W++MI Y + ++ +AL+ F++ +
Sbjct: 175 VTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRM 234
Query: 227 GTG-SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
G+ +++VTM +V+ ACAHLGAL+ G+ + Y C S+G
Sbjct: 235 GSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGD 294
Query: 264 SLLVFFK--LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF++ ++E + L WN+I LA HGF E+L +F +M + P+
Sbjct: 295 AWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPD 343
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 58/336 (17%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF--HFIDYTILVFPQM 86
++ N +CS +EL+ ++A ++KT D + +F+S C S F+ Y +VF
Sbjct: 45 MMPNTETRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGF 104
Query: 87 QEPNVFVYH----AFSSLRHPLQAIAFYLYML---------------------RAEVLLT 121
P+ F+++ FS P +++ Y ML A T
Sbjct: 105 DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETT 164
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H Q+ K G+ + V+ +++++Y+ + F +++ LFD +P+ +WN++I Y
Sbjct: 165 QIHAQITKLGYENDVYAVNSLINSYAATGNF----KLAHLLFDRIPKPDAVSWNSVIKGY 220
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ ++ LF KM + SWTTMI+ Y Q +EAL F++ + S D V++A
Sbjct: 221 AKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLA 280
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
LSACA LGAL+ G+ I Y C +G +L VF ++ K
Sbjct: 281 NALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRK 340
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ A HG EA+ F M ++PN
Sbjct: 341 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ ++ +F + +++WT +I+ Y+ + REA+ F + +K G +
Sbjct: 317 LIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376
Query: 232 QVTMATVLSACAHLGALDLGRGI 254
+T TVL+AC++ G ++ G+ I
Sbjct: 377 VITFTTVLTACSYTGLVEEGKLI 399
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 57/329 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK+CS++K L + ++ + D L +FI C+S F Y+ +F P++++
Sbjct: 48 LKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSS-LGFSHYSHSIFTHKTRPDIYL 106
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVW 128
Y+ A S+ +AI Y +L +++ T +H Q
Sbjct: 107 YNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAI 166
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
G S + V TA++ YS E+R+ LFD + R A WN M+ YA++ ++
Sbjct: 167 GTGLVSDIHVVTALIQMYSSCGCVSEARQ----LFDGVCFRDVAFWNAMVAGYAKVGDVD 222
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF +MP ++ SWT +I Y+Q + EA+ F + + D++ M LSACA
Sbjct: 223 NARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACA 282
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
HLGAL+LG I Y C + ++L VF + K+++ W S
Sbjct: 283 HLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTS 342
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + LA+HG EAL MF M ++PN
Sbjct: 343 MIDGLALHGLGREALEMFSCMERNRIKPN 371
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ ++ +F M + +WT+MI + + REAL+ F+ +++
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIK 369
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+++T +LSAC H+G +++GR Y + +G + K++ + + + L
Sbjct: 370 PNEITFVAILSACCHVGLVEMGR---WYFKCMGTKYGIKPKIQH-----YGCMIDLLGRA 421
Query: 290 GFAHEALGMFDRMTYENVRP 309
GF EA + M +E P
Sbjct: 422 GFLQEAQELVRGMPFEANAP 441
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 57/329 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK+CS++K L + ++ + D L +FI C+S F Y+ +F P++++
Sbjct: 48 LKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSS-LGFSHYSHSIFTHKTRPDIYL 106
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVW 128
Y+ A S+ +AI Y +L +++ T +H Q
Sbjct: 107 YNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAI 166
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
G S + V TA++ YS E+R+ LFD + R A WN M+ YA++ ++
Sbjct: 167 GTGLVSDIHVVTALIQMYSSCGCVSEARQ----LFDGVCFRDVAFWNAMVAGYAKVGDVD 222
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF +MP ++ SWT +I Y+Q + EA+ F + + D++ M LSACA
Sbjct: 223 NARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACA 282
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
HLGAL+LG I Y C + ++L VF + K+++ W S
Sbjct: 283 HLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTS 342
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + LA+HG EAL MF M ++PN
Sbjct: 343 MIDGLALHGLGREALEMFSCMERNRIKPN 371
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ ++ +F M + +WT+MI + + REAL+ F+ +++
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIK 369
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+++T +LSAC H+G +++GR Y + +G + K++ + + + L
Sbjct: 370 PNEITFVAILSACCHVGLVEMGR---WYFKCMGTKYGIKPKIQH-----YGCMIDLLGRA 421
Query: 290 GFAHEALGMFDRMTYENVRP 309
GF EA + M +E P
Sbjct: 422 GFLQEAQELVRGMPFEANAP 441
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 158/327 (48%), Gaps = 61/327 (18%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID--YTILVFPQMQEPNVFVYHA- 96
+K+L+ + A ++KT + LA +F++ CTS H D Y VF + PN F+++A
Sbjct: 1 MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSP-HVGDLLYAQRVFNGITSPNTFMWNAI 59
Query: 97 ---FSSLRHPLQAIAFYLYMLRAEV----------------LLT-----TVHGQVWKNGF 132
+S+ P A Y ML + V LL VHG V K GF
Sbjct: 60 IRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGF 119
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL----- 187
S VF A++ Y+ + +R+LFD +PER +WN MID Y + ++
Sbjct: 120 GSDVFALNALLHVYALCGEI----HCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYG 175
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+F MP ++ SWT++I+ + Q EAL + + +G D V +A++L+ACA+LGA
Sbjct: 176 VFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGA 235
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLR--EKNLLCWNSIT 283
LD GR + Y C + +L VF KL+ +K++ W ++
Sbjct: 236 LDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMI 295
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+ AIHG EAL F+RM E +RPN
Sbjct: 296 DGFAIHGRGVEALEWFNRMRREGIRPN 322
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ WT MI ++ + + EAL+ FN+ ++ G + +T VL AC++ G ++ G+
Sbjct: 287 DVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGK 343
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 160/330 (48%), Gaps = 61/330 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C+++ L+ ++A +++ + D F A IS ++ + +DY VF Q+Q PN+F+
Sbjct: 22 LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINK-NLLDYAAQVFYQIQNPNLFI 80
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLLTTV---------------------HGQVW 128
Y+ FS + P ++ FY+ R ++ + HGQ+
Sbjct: 81 YNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQII 140
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRL--FDEMPERKFATWNTMIDAYARLAE 186
++GF S V+VQ ++V YS + V RR+ D +W +M+ Y + +
Sbjct: 141 RHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLD------VVSWTSMVAGYIKSGD 194
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF+KMP ++ +W+ MI+ Y++N F +A++ + + G +++ M +V+++
Sbjct: 195 VTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIAS 254
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CAHLGAL+LG Y C S+ +++ VF +L ++ L W
Sbjct: 255 CAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSW 314
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ A+HG+A +AL F RM + P
Sbjct: 315 TTLIAGFAMHGYAEKALEYFSRMEKAGLTP 344
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YAR + +F+++P D SWTT+I ++ + +AL+ F++ +K+G
Sbjct: 285 ALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTP 344
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
++T VLSAC+H G ++ RG++++
Sbjct: 345 REITFTAVLSACSHGGLVE--RGLELF 369
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 160/327 (48%), Gaps = 56/327 (17%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+C+++K+L+ ++A I+KT A + ++FC S I+Y L+F + PN++ ++
Sbjct: 34 QCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWN 93
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEVL---LT------------------TVHGQVWKN 130
FS P AI+ ++ ML + VL LT +HG+V K
Sbjct: 94 TIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKL 153
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
G F+Q ++ Y+ S E+RRV FDE+ + N+MI A+ E+
Sbjct: 154 GLEKDQFIQNTIIYMYANSGLLSEARRV----FDELVDLDVVACNSMIMGLAKCGEVDKS 209
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF+ MP +W +MI+ Y +NK+ EAL+ F K + + TM ++LSACAHL
Sbjct: 210 RRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHL 269
Query: 246 GALDLG--------RG------------IQIYCRS--LGRSLLVFFKLREKNLLCWNSIT 283
GAL G RG I +YC+ + +++ VF + L CWNSI
Sbjct: 270 GALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSII 329
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
LA++G+ +A+ F ++ +++P+
Sbjct: 330 IGLALNGYERKAIEYFSKLEASDLKPD 356
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V + F V V TA++D Y ++ V F+ P R + WN++I A
Sbjct: 278 VHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEV----FEASPTRGLSCWNSIIIGLA 333
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
N R+A++ F+K + S D V+ VL+AC
Sbjct: 334 L--------------------------NGYERKAIEYFSKLEASDLKPDHVSFIGVLTAC 367
Query: 243 AHLGALDLGR 252
++GA+ R
Sbjct: 368 KYIGAVGKAR 377
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 84/334 (25%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFI---SFCTSRFHFIDYTILVFPQMQE 88
+ L +CSS+ +++ ++A ++K N + + F+ ++ I S C + + VF Q+Q+
Sbjct: 22 SDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQ----MTLAVNVFNQIQD 77
Query: 89 PNVFVYHAF--SSLRH--PLQAIAFYLYMLRAEV---------------------LLTTV 123
P+V +Y+ + +R+ PL A + + M + V ++ +
Sbjct: 78 PDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMI 137
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H QV K GF +FV +++D+Y + E+RR LFDEMPER +WNT++D Y +
Sbjct: 138 HAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARR----LFDEMPERDTVSWNTILDGYVK 193
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
E+ LF KMPA ++ SW+TM ++G D T+ ++
Sbjct: 194 AGEMNAAFELFEKMPARNVVSWSTM---------------------EAGLKFDDGTVISI 232
Query: 239 LSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNL 276
LSACA G L LG+ I +Y C SL +L +F + K++
Sbjct: 233 LSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDV 292
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN+I + LA+HG +AL +F RM E P+
Sbjct: 293 VSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPD 326
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 62/334 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK C +I EL+ ++A IVK + + FL + + C +Y L+F ++ +PN F+
Sbjct: 21 LKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAE-TEYANLLFKRVADPNAFL 79
Query: 94 YHAF-SSLRHP---LQAIAFYLYMLRAE--------------------------VLLTTV 123
Y+A + +H + AI Y ML L V
Sbjct: 80 YNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 139
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V+K G S V+ ++V+ Y + ++ +V F+EM ER +WNT+I + R
Sbjct: 140 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKV----FEEMTERDAVSWNTLISGHVR 195
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L ++ +F +M I SWT +++ Y++ + +AL+ F + + G D++++ +V
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
L ACA LGAL+LG+ I Y C S+ +F ++ E+++
Sbjct: 256 LPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDV 315
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ LA HG AHEA+ +F M + PN
Sbjct: 316 ISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPN 349
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R N +I+ YA+ + LF++M D+ SW+TMI + + + EA++ F +
Sbjct: 282 RNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEM 341
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
+K+ + +T +LSACAH G L+ G Y S+ R + E + + +
Sbjct: 342 QKAKIEPNIITFVGLLSACAHAGLLNEGLR---YFESMKRDYNI-----EPGVEHYGCLV 393
Query: 284 EALAIHGFAHEALGMFDRM 302
L + G +AL + +M
Sbjct: 394 NLLGLSGRLDQALELIKKM 412
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 149/318 (46%), Gaps = 57/318 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ CS+ +L+ ++ I+K N D L +Q IS +S F Y LVF Q+Q P+ F
Sbjct: 27 LRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLIS-VSSSFGETQYASLVFNQLQSPSTFT 85
Query: 94 YHAFS---SLRH-PLQAIAFYLYMLRAEV---------------------LLTTVHGQVW 128
++ SL H P +A+ ++ ML + L T VHG
Sbjct: 86 WNLMIRSLSLNHKPREALLLFILMLSHQPQFDKFTFPFVIKACLASSSLRLGTQVHGLAI 145
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-----DAYAR 183
K GF + VF Q ++D Y K R++FD+MP R +W TM+ ++
Sbjct: 146 KAGFFNDVFFQNTLMDLYFKCGK----PDCGRKVFDKMPGRSIVSWTTMLYGLVSNSQLD 201
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
AE++FN+MP ++ SWT MIT+Y +N++ EA F + + ++ T+ +L A
Sbjct: 202 SAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAST 261
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LG+L +GR + Y C SL + VF ++ K+L WNS
Sbjct: 262 QLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVMQSKSLATWNS 321
Query: 282 ITEALAIHGFAHEALGMF 299
+ +L +HG EAL +F
Sbjct: 322 MITSLGVHGCGEEALYLF 339
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 82/213 (38%), Gaps = 61/213 (28%)
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYM---------------LRA 116
+D +VF QM NV + A + R P +A + M L+A
Sbjct: 200 LDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQA 259
Query: 117 EVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L + VH KNGF ++ TA++D YS ++R+V FD M +
Sbjct: 260 STQLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKCGSLQDARKV----FDVMQSKS 315
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-G 229
AT W +MITS + EAL F + ++ +
Sbjct: 316 LAT--------------------------WNSMITSLGVHGCGEEALYLFEEMEEEASVE 349
Query: 230 SDQVTMATVLSACAHLGALDLG-----RGIQIY 257
D +T VLSACA+ G + G R IQ+Y
Sbjct: 350 PDAITFVGVLSACANTGNVKDGLRYFTRMIQVY 382
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 159/359 (44%), Gaps = 72/359 (20%)
Query: 21 SVSFIRIHIIANQL-----KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
S+S + IH NQL +KCS++ L+ + ++ + F A + + FC
Sbjct: 32 SMSSVSIHPHLNQLFVAALEKCSNLNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLTLAD 91
Query: 76 IDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLR---------------- 115
+ Y +F + PNVF+Y A++S P A Y M+R
Sbjct: 92 LCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLR 151
Query: 116 --AEVLLTT----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
+VL + VH QV K+GF VQTA+VD+YS +F +R++FDEM ER
Sbjct: 152 SCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYS---RFSSDIGSARQMFDEMLER 208
Query: 170 KFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT- 223
+W MI YARL LF MP D+ +W +I +QN F EA+ F +
Sbjct: 209 TVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMV 268
Query: 224 --KKSGTGSD------QVTMATVLSACAHLGALDLGRGIQIY------------------ 257
G +D + T+ + LSAC H G L LG+ I Y
Sbjct: 269 LLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLD 328
Query: 258 ----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY--ENVRPN 310
C +L + VF + KNL WNS+ LA+HG + A+ +F + + + V+PN
Sbjct: 329 MYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPN 387
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 32/131 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V+K F+ A++D Y +V+RR+FD + + +WN++I+ A
Sbjct: 307 IHGYVFKTYPGQDSFISNALLDMYGKCGNL----KVARRVFDMITLKNLTSWNSLINCLA 362
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATVLS 240
+ +S + A+D F + G G ++VT VL+
Sbjct: 363 ---------------------LHGHSGS-----AIDLFAELIHCGDGVKPNEVTFVGVLN 396
Query: 241 ACAHLGALDLG 251
AC H G ++ G
Sbjct: 397 ACTHGGLVEKG 407
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 163/337 (48%), Gaps = 64/337 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C +I EL+ ++A ++K + + FL + + C + + Y L+F Q++EPN ++
Sbjct: 21 LQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVC-DKTEDLGYASLLFKQVKEPNGYL 79
Query: 94 YHAF--SSLRHPLQAIA--FYLYMLRAEV----------------------------LLT 121
Y+A + + + A+A FY MLR + L
Sbjct: 80 YNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGK 139
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH + K G S + ++ A++D Y+ ++ +V FD M ER +WN++I +
Sbjct: 140 QVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKV----FDGMVERDAISWNSIISGH 195
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ ++ LF+ MP I SWT MI+ Y++ + +AL F + + G D++++
Sbjct: 196 VGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISII 255
Query: 237 TVLSACAHLGALDLGRGIQIYCR----------------------SLGRSLLVFFKLREK 274
+VL ACA LGAL++G+ I +YC +G++ +F ++ +
Sbjct: 256 SVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKG 315
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+++ W+++ LA HG A EA+ +F RM + PNG
Sbjct: 316 DVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNG 352
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 169 RKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
RK + N +++ Y++ A LF++M D+ SW+TMI + + + REA++ F +
Sbjct: 284 RKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRM 343
Query: 224 KKSGTGSDQVTMATVLSACAHLG 246
KK+ + +T +LSACAH G
Sbjct: 344 KKAKIEPNGITFLGLLSACAHAG 366
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 119/394 (30%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFI---SFCTSRFHFIDYTILVFPQMQE 88
+ L +CSS+ +++ ++A ++K N + + F+ ++ I S C + + VF Q+Q+
Sbjct: 22 SDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQ----MTLAVNVFNQIQD 77
Query: 89 PNVFVYHAF--SSLRH--PLQAIAFYLYMLRAEV---------------------LLTTV 123
P+V +Y+ + +R+ PL A + + M + V ++ +
Sbjct: 78 PDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMI 137
Query: 124 HGQVWKNGFSSPVFVQTAMVDNY--------SYSNKFFE--------------------- 154
H QV K GF +FV +++D+Y + + K FE
Sbjct: 138 HAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVG 197
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYAR------------------------------- 183
+RRLFDEMPER +WNT++D Y +
Sbjct: 198 ELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSK 257
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+A +LF+KMP ++ WT MI+ Y++ ++A++ +N+ +++G D T+ ++
Sbjct: 258 AGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISI 317
Query: 239 LSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNL 276
LSACA G L LG+ I +Y C SL +L +F + K++
Sbjct: 318 LSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDV 377
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN+I + LA+HG +AL +F RM E P+
Sbjct: 378 VSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPD 411
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ L +F+ M D+ SW +I + + +AL F++ K G
Sbjct: 350 NALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFV 409
Query: 230 SDQVTMATVLSACAHLGALDLGR-------------------GIQIYCRSLGRSLLVFFK 270
D+VT VL AC H G +D G G + G L F+
Sbjct: 410 PDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFR 469
Query: 271 L-----REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L E N + W ++ A +H A +FDR+ + +G
Sbjct: 470 LVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSG 515
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 151/311 (48%), Gaps = 78/311 (25%)
Query: 78 YTILVFPQMQEPNVFVYHAF---SSLRH-PLQAIAFYLYM---------------LRAEV 118
Y + +F Q+ +P+ F+++ + SS H P+ A+A Y M L+A
Sbjct: 59 YAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACT 118
Query: 119 LL------TTVHGQVWKNGFSSPVFVQTAMV------DNYSYSNKFFESR---------- 156
L + VHG+V++ GF S V V+ ++ + +N F+
Sbjct: 119 KLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSA 178
Query: 157 -----------RVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
V+R+LFDEMP+R +WN MI AY + E+ LF++ P D+ SW
Sbjct: 179 LIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSW 238
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA---------LDLG 251
M+ Y + +EAL+ F++ + G D+VTM ++LSACA LG ++L
Sbjct: 239 NAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGDXGEKVHAKIMELN 298
Query: 252 RG----------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
+G + +Y C ++G+ + VF+ +R+K+++ WNS+ LA HG A E+LG+F
Sbjct: 299 KGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLF 358
Query: 300 DRMTYENVRPN 310
M V P+
Sbjct: 359 REMQRTKVCPD 369
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 165 EMPERKFAT--WNTMIDAYARLAELLFNKMPAWDIR-----SWTTMITSYSQNKQFREAL 217
E+ + K +T N ++D YA+ + W IR SW ++I + + E+L
Sbjct: 296 ELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESL 355
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
F + +++ D++T VL+AC+H G +D G
Sbjct: 356 GLFREMQRTKVCPDEITFVGVLAACSHTGNVDEG 389
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 146/290 (50%), Gaps = 59/290 (20%)
Query: 76 IDYTILVFPQMQEPNV----FVYHAFSSLRHPLQAIAFYLYMLRAEVLLT---------- 121
+DY ++ +P FV FS+ R+P ++I+ Y+ MLR +L
Sbjct: 804 VDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKS 863
Query: 122 -----------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
++H V K+G +F+ ++ Y F + +R+LFDEMP +
Sbjct: 864 SSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGS----FRDQASARKLFDEMPHKN 919
Query: 171 FATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
TWN+++DAYA+ A L+F++M D+ +W++MI Y + ++ +AL+ F++ +
Sbjct: 920 LVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMR 979
Query: 226 SGTG-SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLG 262
G+ +++VTM +V+ ACAHLGAL+ G+ + Y C S+G
Sbjct: 980 MGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIG 1039
Query: 263 RSLLVFFK--LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF++ ++E + L WN+I LA HGF E+L +F +M + P+
Sbjct: 1040 DAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPD 1089
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 150/317 (47%), Gaps = 58/317 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQE-PNV 91
L+KCSS+ EL+ ++A + KT + L+ + +F S + Y +VF + PN
Sbjct: 17 LEKCSSMMELKQIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAKIVFDSLSSRPNT 76
Query: 92 FVYHA----FSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQ 126
++++A ++ P +A+ Y ML V LL VH Q
Sbjct: 77 YIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQVHAQ 136
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ K GF S V+ +++ Y+ S F ES R+ +FD +P +WN++ID Y + E
Sbjct: 137 IIKLGFGSDVYTTNSLLHAYAASG-FIESARI---IFDRIPHPDTVSWNSIIDGYVKCGE 192
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
LF MP + S+T MI+ + Q +EALD F + + +G D++ + VLSA
Sbjct: 193 TETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSA 252
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CAHLGALD GR I Y C S+ +L VF K R+K++ W
Sbjct: 253 CAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLW 312
Query: 280 NSITEALAIHGFAHEAL 296
++ AIHG EAL
Sbjct: 313 TALIHGFAIHGRGREAL 329
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 164/337 (48%), Gaps = 61/337 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C +IK+L+ ++ I+ + FL + +SF + + ++ VF +++ P+ V
Sbjct: 25 LQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAH-KVFERIENPSTTV 83
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEV------------------LL---TTVHGQVW 128
++ S P + + Y M+ AE LL VHG+V
Sbjct: 84 WNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVV 143
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
NG+ + VFV+T++V+ Y+ + + + R +RR+FDE+ +R +WN+++ Y R ++
Sbjct: 144 ANGYCTNVFVRTSLVNLYAIAGGY-DGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD 202
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F++MP ++ SWTTMI +Q + ++AL F++ +++G DQV + LSACA
Sbjct: 203 GARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACA 262
Query: 244 HLGALDLGRGIQIY--------------------------CRSLGRSLLVFFKLREKNLL 277
LG L LG I Y C + ++ VF +++++ +
Sbjct: 263 ELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTI 322
Query: 278 CWNSITEALAIHGFAHEALGMF---DRMTYENVRPNG 311
W S+ A G A EALG+F R+ + RP+G
Sbjct: 323 SWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDG 359
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I YA + +F M SWT+MIT +++ EAL F ++ GT
Sbjct: 294 NSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTD 353
Query: 230 S---DQVTMATVLSACAHLGALDLGR 252
D +T VL AC+H G +D GR
Sbjct: 354 EGRPDGITFIGVLCACSHAGFVDQGR 379
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 58/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L++ S E + ++A I+ + F+ + + C + +DY +F Q+ PNVF+
Sbjct: 17 LQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLC-DKLGDMDYATRLFNQVSNPNVFL 75
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEV----------------------LLTTVHGQV 127
Y+ A++ I Y +LR + L VHG +
Sbjct: 76 YNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
+K G V + A++D Y + ++ +V FDEM ER +WN+++ YARL ++
Sbjct: 136 YKFGPRFHVVTENALIDMYMKFDDLVDAHKV----FDEMSERDVISWNSLLSGYARLGQM 191
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+ M I SWT MI+ Y+ + EA+D F + + +G D++++ +VL +C
Sbjct: 192 KKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
AHLG+L+LG+ I +Y C L +++ +F + + K+++ W+
Sbjct: 252 AHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWS 311
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ A HG AH A F M V+PNG
Sbjct: 312 TMISGYAYHGNAHRAFETFIEMQRAKVKPNG 342
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
++ N +I+ Y++ L LF + D+ SW+TMI+ Y+ + A + F +
Sbjct: 274 KQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEM 333
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
+++ + +T +LSAC+H+G G
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGLWQQG 361
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 168/358 (46%), Gaps = 83/358 (23%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF--HFIDYTILVFPQMQEPNVF 92
+KC++ + L+ ++A ++ N + ++ I F ++ +DY +F Q+ +P++F
Sbjct: 21 QKCTNFRSLKQLHAFLIVNGLNSTTSVLRELI-FVSAIVVSGTMDYAHQLFAQISQPDIF 79
Query: 93 VYHAF----SSLRHPLQAIAFYLYM---------------LRAEVLLT------TVHGQV 127
+++ + P A++ Y M L+A L+ +HG+V
Sbjct: 80 MWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKV 139
Query: 128 WKNGFSSPVFVQTAMV------DNYSYSNKFFES-----------------RR----VSR 160
K+GF S FV+ ++ + + + F++ RR V+R
Sbjct: 140 LKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVAR 199
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
+LFDEMP + +WN MI AYA+ E+ LF+++P D+ +W MI Y ++ +E
Sbjct: 200 QLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKE 259
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ-------------------- 255
AL+ F+ + G D VTM ++LSA A LG L++G+ I
Sbjct: 260 ALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALI 319
Query: 256 ---IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+G +L VF +R+K+ WNSI LA+HG A E++ +F M ++PN
Sbjct: 320 DMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPN 377
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 155 SRRVSRRLFDEM-PERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
+++ R +FD + N +ID YA+ + +F M D SW ++I +
Sbjct: 295 GKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLA 354
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF 268
+ E+++ F + + +++T VL AC+H G + GR +Y +
Sbjct: 355 LHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGR---MYFNLMKN----V 407
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
FK+ E N+ + + + L G EA D M E PN
Sbjct: 408 FKI-EPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIE---PN 445
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 63/341 (18%)
Query: 29 IIANQL------KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILV 82
II+NQ K C+++++L+ +A ++K+ ++ F A + ++FC S +DY LV
Sbjct: 20 IISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLV 79
Query: 83 FPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEVL----LT------------- 121
F QMQ PN+F V FS +P A+ ++ ML + + LT
Sbjct: 80 FLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGL 139
Query: 122 -----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG++ K G F++ ++ Y Y+ F S +RR+F++ E +WN+
Sbjct: 140 AHDGAQLHGRIIKLGLQFDPFIRNTIL--YMYATGGFLSE--ARRIFNQEMEFDVVSWNS 195
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
MI A+ E+ LF+KMP + SW +MI Y +N F+EAL F K ++
Sbjct: 196 MILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPS 255
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
+ TM ++L+A A +GAL G I Y C S+G +L VF
Sbjct: 256 EFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFE 315
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ ++L WNS+ LA++G EA+ +F + +++P+
Sbjct: 316 KIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPD 356
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y + + +F K+P + SW +MI + N +EA+ F + S
Sbjct: 296 AIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKP 355
Query: 231 DQVTMATVLSACAHLGALDLG 251
D ++ VL+AC H +D G
Sbjct: 356 DCISFMAVLTACNHGAMVDEG 376
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 154/329 (46%), Gaps = 57/329 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNA-NLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L++CS+I EL+ ++ ++K +++ ++ + F + Y +VF ++ PN
Sbjct: 18 LERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTV 77
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQV 127
+++ A+S+ P +A+ Y ML + LL +H Q+
Sbjct: 78 MWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQI 137
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR---- 183
K GF S V+ +++ Y+ S S + + LFD +P R +WNTMID Y +
Sbjct: 138 IKRGFGSEVYATNSLLRVYAISG----SIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNV 193
Query: 184 -LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+A +F MP ++ SWT+MI + + +EAL + +G D++T++ LSAC
Sbjct: 194 EMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSAC 253
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LGAL+ G+ I Y C + ++LLVF KL +K + W
Sbjct: 254 AGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWT 313
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRP 309
+I A+HG EAL F +M ++P
Sbjct: 314 AIIGGFAVHGKGSEALDWFTQMQKAGIKP 342
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 177 MIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y + E L+F+K+ + +WT +I ++ + + EALD F + +K+G
Sbjct: 284 LIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPT 343
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
T VL+AC+H G ++ G +SL S+ F+ ++ + + + + L GF
Sbjct: 344 SFTFTAVLTACSHTGLVEEG-------KSLFESMSTFYNMKPV-MEHYGCMVDLLGRAGF 395
Query: 292 AHEALGMFDRMTYENVRPN 310
EA + M ++PN
Sbjct: 396 LKEAKEFVESMP---IKPN 411
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 144/328 (43%), Gaps = 59/328 (17%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVYH 95
+SI EL +A I+K+ F A + I+ ++ H I Y +F ++ PN ++++
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKN 130
A+++ P A+ + ML A VL +HG V K
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKT 137
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR--LAEL- 187
G +F+Q ++ Y+ ++R L D M ER +WN ++ AYA L EL
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARH----LLDRMLERDVVSWNALLSAYAERGLMELA 193
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+F + P ++ SW MIT YS +F E L F + +G D T+ +VLSACAH
Sbjct: 194 SRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAH 253
Query: 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
+GAL G + Y C S+ ++L VF K++ WNSI
Sbjct: 254 VGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSI 313
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ HG AL +F M E +PN
Sbjct: 314 ISGLSTHGSGQHALQIFSEMLVEGFKPN 341
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + KNG S FV TA+VD YS ++ V
Sbjct: 263 VHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV------------------------ 298
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
FN DI +W ++I+ S + + AL F++ G ++VT VLSAC
Sbjct: 299 ------FNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSAC 352
Query: 243 AHLGALDLGR 252
+ G LD GR
Sbjct: 353 SRAGLLDEGR 362
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 34/227 (14%)
Query: 113 MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
+LR E L ++HG V K+GF FV +++ Y +R+V FD P +
Sbjct: 23 LLRKE-LGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARKV----FDGTPVKNLV 77
Query: 173 TWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+WN+M+D YA+ LA LF+ MP D+RSW+ +I Y+++ + +A+ F K + SG
Sbjct: 78 SWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSG 137
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265
+++VTM +VL ACAHLGALD GR + Y C ++ +
Sbjct: 138 PKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAF 197
Query: 266 LVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF LR+ ++L WN++ LA HG E+L ++ M ++P+
Sbjct: 198 AVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPD 244
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN--KMPAWDIRSWTTMITS 206
+ R + + L D E ++ID YA+ + +F + D+ W MI
Sbjct: 160 KGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGG 219
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+ + +E+LD + + + +G D++T +LSACAH G
Sbjct: 220 LATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGG 259
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 148/319 (46%), Gaps = 58/319 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ CS+ +L+ ++ I+K N D L +Q IS +S F Y LVF Q+Q P+ F
Sbjct: 27 LRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLIS-VSSSFGETQYASLVFNQLQSPSTFT 85
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEV----------------------LLTTVHGQV 127
++ + S P +A+ ++ M+ + L T VHG
Sbjct: 86 WNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLA 145
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-----DAYA 182
K GF + VF Q ++D Y K R+V FD+MP R +W TM+ ++
Sbjct: 146 IKAGFFNDVFFQNTLMDLYFKCGKPDSGRKV----FDKMPGRSIVSWTTMLYGLVSNSQL 201
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
AE++FN+MP ++ SWT MIT+Y +N++ EA F + + ++ T+ +L A
Sbjct: 202 DSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 261
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
LG+L +GR + Y C SL + VF ++ K+L WN
Sbjct: 262 TQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWN 321
Query: 281 SITEALAIHGFAHEALGMF 299
S+ +L +HG EAL +F
Sbjct: 322 SMITSLGVHGCGEEALSLF 340
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 92/245 (37%), Gaps = 70/245 (28%)
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYM---------------LRA 116
+D +VF QM NV + A + R P +A + M L+A
Sbjct: 201 LDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQA 260
Query: 117 EVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L + VH KNGF F+ TA++D YS ++R+V FD M +
Sbjct: 261 STQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKV----FDVMQGKS 316
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-G 229
AT W +MITS + EAL F + ++ +
Sbjct: 317 LAT--------------------------WNSMITSLGVHGCGEEALSLFEEMEEEASVE 350
Query: 230 SDQVTMATVLSACAHLGALDLG-----RGIQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284
D +T VLSACA+ G + G R IQ+Y S +RE N + +
Sbjct: 351 PDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGIS---------PIREHNACMIQLLEQ 401
Query: 285 ALAIH 289
AL +
Sbjct: 402 ALEVE 406
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 159/347 (45%), Gaps = 72/347 (20%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILV 82
+R H + L C +++ L ++A ++KT + + + + C HF + Y I V
Sbjct: 31 LRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISV 90
Query: 83 FPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
F +QEPN+ ++ HA SS P+ A+ Y+ M+ +L +
Sbjct: 91 FETIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 148
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+HG V K G+ +FV T+++ Y + + ++R+V FD P R ++
Sbjct: 149 AFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV----FDRSPHRDVVSYT 204
Query: 176 TMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+I YA A+ LF+++P D+ SW MI+ Y++ ++EAL+ F + K+
Sbjct: 205 ALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRP 264
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
D+ TM TV+SACA G+++LGR + + C L + +F
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLF 324
Query: 269 FKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L K+++ WN++ I G+ H EAL +F M RPN
Sbjct: 325 EGLLYKDVISWNTL-----IGGYTHMNLYKEALLLFQEMLRSGERPN 366
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+++D Y++ EL LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 305 NSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER 364
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAH 424
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A A +F RM + P+
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPD 469
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN + + SW MI ++ + + A D F++ +K G
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEP 468
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+ G LDLGR I R++ +K+ K L + + + L G
Sbjct: 469 DDITFVGLLSACSRSGMLDLGRHIF-------RTMTQDYKITPK-LEHYGCMIDLLGHSG 520
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M E P+G
Sbjct: 521 LFKEAEEMINNMEME---PDG 538
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 149/339 (43%), Gaps = 65/339 (19%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L++C + L+ + A ++ F A + + FCT + Y +F ++ PNV++
Sbjct: 62 LERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESPNVYL 121
Query: 94 YHA----FSSLRHPLQAIAFYLYMLR-----------AEVLLTT-----------VHGQV 127
Y A ++S A+ Y M+R VL + VH QV
Sbjct: 122 YTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQV 181
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE- 186
++GF VQTA++D Y +F+ +R LFDEM ER +W MI Y RL +
Sbjct: 182 LRSGFEQYPVVQTALLDAYL---RFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQI 238
Query: 187 ----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-------DQVTM 235
LLF +MP D+ SW +I Y+QN F EAL F + G+ +QVT
Sbjct: 239 GNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTA 298
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
LSAC H G L LG+ I Y C L + VF + E
Sbjct: 299 VCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLE 358
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTY--ENVRPN 310
++L WNS+ LA+HG + A+ +F+ M V+P+
Sbjct: 359 RSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPD 397
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 84/214 (39%), Gaps = 58/214 (27%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V++NG FV A+VD Y E+RRV FD ER +WN+MI+ A
Sbjct: 317 IHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRV----FDRTLERSLTSWNSMINCLA 372
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATVLS 240
+ SQN A+ F + G+G D+VT +L+
Sbjct: 373 ---------------------LHGQSQN-----AISVFEEMMTCGSGVKPDEVTFIGLLN 406
Query: 241 ACAHLGALDLG----------RGIQIYCRS-------LGR------SLLVFFKLR-EKNL 276
AC H G ++ G GI+ LGR ++ V +R E +
Sbjct: 407 ACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDE 466
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W S+ IHG H L F ++ PN
Sbjct: 467 VIWGSLLNGCKIHG--HTDLAEFSIKKLIDMDPN 498
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 66/333 (19%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF-S 98
+ EL+ +A ++K + FL + I C R +DY +F ++ +PN ++Y+A
Sbjct: 1 MAELKKNHALVIKYALSQSNFLVTKMIDVC-DRNEDMDYASFLFKEVIDPNAYLYNAMIR 59
Query: 99 SLRHPLQ---AIAFYLYMLR-------AEVLL-----------------------TTVHG 125
+ H I FY MLR +E L+ VH
Sbjct: 60 ACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHA 119
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
Q +K G S + + A++D Y+ + ++ LFDEM ER +WN +I + RL
Sbjct: 120 QFFKFGKKSHLITENALIDMYTKCDNLLDAHN----LFDEMHERGAISWNGIISGHVRLG 175
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ LF++MP I SWT +I+ Y++ + +ALD F + + +G D+ ++ +VL
Sbjct: 176 QMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLP 235
Query: 241 ACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLREKNLLC 278
ACA LGAL+ G+ I ++C G ++ +F ++R ++++
Sbjct: 236 ACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVIS 295
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W+++ LA HG EA+ +F+RM N++PNG
Sbjct: 296 WSTMIGGLANHGKVREAIAIFERMKQTNIKPNG 328
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R+ N +I+ Y + + LF++M D+ SW+TMI + + + REA+ F +
Sbjct: 260 RRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERM 319
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
K++ + +T +LSACAH G + G +Y ++ + + E + + S+
Sbjct: 320 KQTNIKPNGITFVGLLSACAHAGFWEEG---LMYFDTMKKDFHI-----EPEIEHYGSLV 371
Query: 284 EALAIHGFAHEALGMFDRM 302
+ L G +AL + ++M
Sbjct: 372 DLLGRAGRLSQALDIVEKM 390
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 151/329 (45%), Gaps = 57/329 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L C L ++ ++ + D QFI CTS Y +F P++ +
Sbjct: 31 LSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTS-LGLSSYAFSIFSNKTHPDLRL 89
Query: 94 YH----AFSSLRHPLQAIAFYLYM---------------LRAEVLLTTV------HGQVW 128
Y+ A S P+ AI Y + L+A V L+ V H Q
Sbjct: 90 YNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTV 149
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+ V V T+++ YS S F +R+LFD + + A WN M+ Y ++ EL
Sbjct: 150 SSALDMDVNVATSLIQMYS-SCGFVSD---ARKLFDFVGFKDVALWNAMVAGYVKVGELK 205
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+FN+MP ++ SWTT+I Y+Q + EA++ F K + D++ M VLSACA
Sbjct: 206 SARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACA 265
Query: 244 HLGALDLGRGIQIY------CR----------------SLGRSLLVFFKLREKNLLCWNS 281
LGAL+LG I Y CR ++ R+L VF +++K+++ W++
Sbjct: 266 DLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWST 325
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ALA+HG EA+ MF RM VRPN
Sbjct: 326 VIAALALHGLGGEAIDMFLRMEKAKVRPN 354
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R + +N +ID YA+ + +F M + +W+T+I + + + EA+D F +
Sbjct: 287 RIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRM 346
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
+K+ ++VT +LSAC+H+G +D+GR +S+ +K+ E + + +
Sbjct: 347 EKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSM-------YKI-EPKIEHYGCMI 398
Query: 284 EALAIHGFAHEALGMFDRMTYE 305
+ LA G+ EA + M +E
Sbjct: 399 DLLARAGYLQEAQKLLHDMPFE 420
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 64/355 (18%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFH 74
N PT I + I+ L C ++K+ + + ++ T D F A + + F T S F
Sbjct: 18 NHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFI 77
Query: 75 FIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV------------ 118
+DY++ +F +++ N F+++ A+ +A+ Y M++ V
Sbjct: 78 GLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 137
Query: 119 -----LLT----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
LL +H V K GF S V+VQ +++ Y+ R +R+LFDE P
Sbjct: 138 ACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNM----RDARKLFDESPVL 193
Query: 170 KFATWNTMIDAYARLAEL--------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
+WN+++ Y + ++ LFN+M D+ SW+ +I+ Y QN + EAL F
Sbjct: 194 DSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 253
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQIY--------------- 257
+ +G D+V + +VLSACAHL + G+ GI+ Y
Sbjct: 254 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMY 313
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + +L VF + EK + WN++ LA++G +L MF M V PN
Sbjct: 314 MKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPN 368
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 26/130 (20%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + G S V +Q A++ + YS+ + + V L
Sbjct: 286 IHGLVIRMGIESYVNLQNALI--HMYSDMYMKCGCVENALE------------------- 324
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+FN M + SW +I + N +LD F++ K +G +++T VL AC
Sbjct: 325 -----VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGAC 379
Query: 243 AHLGALDLGR 252
H+G +D GR
Sbjct: 380 RHMGLVDEGR 389
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 152/332 (45%), Gaps = 57/332 (17%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV 91
N L+K S+ ++ V A I++ N + D L ++ + C S + +DY L+F Q+Q P+
Sbjct: 37 NLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLLRLCFS-YQKVDYATLIFDQIQNPHT 95
Query: 92 FVYH----AFSSLRHPLQAIAFYLYML---------------------RAEVLLTTVHGQ 126
F ++ A++ + QA+ Y M+ A VHG
Sbjct: 96 FTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGF 155
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
K GF F+ ++D Y +R+LFD+M R +W T + E
Sbjct: 156 AIKTGFWKDTFLSNTLMDLYFKCGDL----DYARKLFDKMAVRSVVSWTTFVAGLVACGE 211
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L F++MP ++ SWT MI Y +N++ +EA + F + + + + T+ +L A
Sbjct: 212 LDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRA 271
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C LG+L+LGR I Y C S+ + VF ++++K+L W
Sbjct: 272 CTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATW 331
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
NS+ +L +HGF EAL +F +M NVRP+
Sbjct: 332 NSMITSLGVHGFGKEALALFAQMEEANVRPDA 363
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H +NGF VF+ TA++D YS ++++V F+EM ++ ATWN
Sbjct: 284 IHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKV----FEEMQKKSLATWN------- 332
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+MITS + +EAL F + +++ D +T VL AC
Sbjct: 333 -------------------SMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFAC 373
Query: 243 AHLGALDLG 251
+ ++ G
Sbjct: 374 VNTNNVEAG 382
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 162/334 (48%), Gaps = 61/334 (18%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH- 95
C +IK+L+ ++ I+ + FL + +SF + + ++ VF +++ P+ V++
Sbjct: 44 CDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAH-KVFERIENPSTTVWNQ 102
Query: 96 ---AFSSLRHPLQAIAFYLYMLRAEV------------------LL---TTVHGQVWKNG 131
S P + + Y M+ AE LL VHG+V NG
Sbjct: 103 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANG 162
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
+ + VFV+T++V+ Y+ + + + R +RR+FDE+ +R +WN+++ Y R ++
Sbjct: 163 YCTNVFVRTSLVNLYAIAGGY-DGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGAR 221
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F++MP ++ SWTTMI +Q + ++AL F++ +++G DQV + LSACA LG
Sbjct: 222 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 281
Query: 247 ALDLGRGIQIY--------------------------CRSLGRSLLVFFKLREKNLLCWN 280
L LG I Y C + ++ VF +++++ + W
Sbjct: 282 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 341
Query: 281 SITEALAIHGFAHEALGMF---DRMTYENVRPNG 311
S+ A G A EALG+F R+ + RP+G
Sbjct: 342 SMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDG 375
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I YA + +F M SWT+MIT +++ EAL F ++ GT
Sbjct: 310 NSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTD 369
Query: 230 S---DQVTMATVLSACAHLGALDLGR 252
D +T VL AC+H G +D GR
Sbjct: 370 EGRPDGITFIGVLCACSHAGFVDQGR 395
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 153/339 (45%), Gaps = 62/339 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC--TSRFHFIDYTILVFPQMQ 87
+ + L KC S+ EL ++A ++KTN F + I+FC + +DY VF ++Q
Sbjct: 9 VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68
Query: 88 EPNVFVYHA----FSSLRHPLQAIAFYLYMLRA------------EVLLTT--------- 122
PN F++ A FS +P++++ Y ML VL
Sbjct: 69 HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128
Query: 123 --VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VHGQV K FV +MV Y F ++RR+FD MP R +WN+MI
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYID----FGEIELARRVFDRMPNRDVVSWNSMIAG 184
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y + E+ +F M D+ +WT+MI++Y QN+ +ALD F + G D +
Sbjct: 185 YLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAI 244
Query: 236 ATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKL- 271
+VLSA A LG ++ G+ + Y C + + VF +
Sbjct: 245 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 304
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N+ WNS+ LAIHG A EAL +F M ++ PN
Sbjct: 305 HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPN 343
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
+I W +MI+ + + REALD F + ++ +++T +LS C+H G ++ G Q
Sbjct: 308 NIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG---Q 364
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
Y S+ + +++ + + + G +ALG+ M +E
Sbjct: 365 FYFESMHEKYKIVPRIQH-----YGCMIDLFGRAGRLEDALGVIQNMPFE 409
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 66/355 (18%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
TSF+K ++F+ +I+ L C S+ EL+ ++A + + D + + + F
Sbjct: 4 TSFRK------IAFLNQTLIS-LLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSA 56
Query: 71 -SRFHFIDYTILVFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEV------- 118
S +DY+ + + P F + AFS+ ++P +I ++ ML+ V
Sbjct: 57 LSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTY 116
Query: 119 --------------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
L VH + K+G F+Q +++ Y+ +R+V FD
Sbjct: 117 PFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKV----FD 172
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
EMP + TWN M+D YA+ +L +FN MP D+ SW+++I Y + + + EA+
Sbjct: 173 EMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMAL 232
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------- 257
F + G +++VT+ + L ACAHLGAL+ GR + Y
Sbjct: 233 FERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAK 292
Query: 258 CRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ +L VF L+E ++L WN+I LA HG EA+ +F M + P+
Sbjct: 293 CGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPD 347
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 169/359 (47%), Gaps = 84/359 (23%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF--HFIDYTILVFPQMQEPNVF 92
+ C++++ L+ ++A+++ N + ++ I F ++ IDY +F Q+ EP++F
Sbjct: 21 QNCTNLRSLKQIHASLIIKGFNSSSYALRELI-FASAIVIPGTIDYAHQLFDQVAEPDIF 79
Query: 93 VYHAF----SSLRHPLQAIAFYL---------------YMLRAEVLLT------TVHGQV 127
+++ S P++A++ Y ++L+A L +HG+
Sbjct: 80 MWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACTRLEWRNMGFCIHGKA 139
Query: 128 WKNGFSSPVFVQTAMV------DNYSYSNKFFE-----------------SRR----VSR 160
K+GF FV+ +V + + + F+ +RR ++R
Sbjct: 140 LKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVVAWSALTAGYARRGELCMAR 199
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
RLFDEMP + WN +I AY + E+ LFN++P D+ +W MI + + +
Sbjct: 200 RLFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQ 259
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ-------------------- 255
AL+ F + G D+VTM ++LSAC LG L++G+ +
Sbjct: 260 ALEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNALT 319
Query: 256 -IY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT-YENVRPN 310
+Y C S+ R+L VF +REK++ WNS+ LA+HG A E++ +F M N++PN
Sbjct: 320 YMYAKCGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLNNIKPN 378
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 160/334 (47%), Gaps = 62/334 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK C +I EL+ ++A IVK + + FL + + C + + +Y L+F + +PN F+
Sbjct: 21 LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVC-NHYGETEYANLLFKGVADPNAFL 79
Query: 94 YHA-FSSLRHP---LQAIAFYLYMLRAE--------------------------VLLTTV 123
Y+A + +H + AI Y ML L V
Sbjct: 80 YNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 139
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V+K G S V+ ++V+ Y + ++ RV F+EM ER +WNT+I + R
Sbjct: 140 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRV----FEEMTERDAVSWNTLISGHVR 195
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L ++ +F +M I SWT +++ Y++ + +AL+ F + + G D++++ +V
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
L CA LGAL+LG+ I IY C S+ + +F +++E+++
Sbjct: 256 LPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDV 315
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ LA HG A EA+ +F M + P+
Sbjct: 316 ISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 349
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R N +I+ YA+ + LF++M D+ SW+TMI + + + REA++ F +
Sbjct: 282 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 341
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
+K+ +T +L+ACAH G L+ G Y S+ R + E + + +
Sbjct: 342 QKAKIEPSIITFVGLLTACAHAGLLNEGLR---YFESMKRDYNI-----EPGVEHYGCLV 393
Query: 284 EALAIHGFAHEALGMFDRMTYENVRP 309
L + G +AL + +M + P
Sbjct: 394 NLLGLSGRLDQALELVKKMPRKPDSP 419
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 66/355 (18%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
TSF+K ++F+ +I+ L C S+ EL+ ++A + + D + + + F
Sbjct: 4 TSFRK------IAFLNQTLIS-LLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSA 56
Query: 71 -SRFHFIDYTILVFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEV------- 118
S +DY+ + + P F + AFS+ ++P +I ++ ML+ V
Sbjct: 57 LSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTY 116
Query: 119 --------------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
L VH + K+G F+Q +++ Y+ +R+V FD
Sbjct: 117 PFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKV----FD 172
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
EMP + TWN M+D YA+ +L +FN MP D+ SW+++I Y + + + EA+
Sbjct: 173 EMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMAL 232
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------- 257
F + G +++VT+ + L ACAHLGAL+ GR + Y
Sbjct: 233 FERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAK 292
Query: 258 CRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ +L VF L+E ++L WN+I LA HG EA+ +F M + P+
Sbjct: 293 CGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPD 347
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 86/360 (23%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFV 93
K C+++ L+ ++AT++ N + ++ I + + I+Y VF Q+ EP++F+
Sbjct: 21 KNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFM 80
Query: 94 YHAF----SSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQVW 128
++ S ++P + + Y M V LL VHG+V
Sbjct: 81 WNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVL 140
Query: 129 KNGFSSPVFVQTAMVDNYSYSN---------KFFE----------------SRR----VS 159
K GF FV+ ++ Y +SN F++ +RR V+
Sbjct: 141 KYGFEVNSFVRNTLI--YFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVA 198
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFR 214
R++FDEMP + +WN MI Y + E+ LF++ P D+ +W TMI Y + R
Sbjct: 199 RQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQR 258
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------------------- 253
+AL+ F + + G D+VTM ++LSACA LG L +GR
Sbjct: 259 QALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNAL 318
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
+ +Y C S+ +L VF K+REK++ WNS+ LA HG A E++ +F M +N++PN
Sbjct: 319 VDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPN 378
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 29/148 (19%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGT 228
N ++D YA+ + +F KM D+ +W ++I + + E++ F + +
Sbjct: 316 NALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNI 375
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSI 282
+++T V+ AC+H G ++ GR +FKL E N++ +
Sbjct: 376 KPNEITFVGVIVACSHAGNVEEGR--------------RYFKLMRERYDIEPNMIHHGCM 421
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L G EA + +M E PN
Sbjct: 422 VDLLGRAGLLSEAFELIAKMEIE---PN 446
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 80/315 (25%)
Query: 76 IDYTILVFPQMQEPNVFVYHAF---SSLRH-PLQAIAFYLYM---------------LRA 116
I Y + +F Q+ +P+ F+++ + SS H P+ A+A Y M L+A
Sbjct: 57 IRYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKA 116
Query: 117 EVLL------TTVHGQVWKNGFSSPVFVQTAMV-------DNYSYSNKFFESRR------ 157
L + VHG+V + GF S V V+ ++ D ++ F +S +
Sbjct: 117 CTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAW 176
Query: 158 --------------VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR 198
V+R+LFDEMP+R +WN MI Y + E+ LF++ P DI
Sbjct: 177 SALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIV 236
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--- 255
SW +I Y REAL+ F++ G D+VTM ++LSACA LG L+ G +
Sbjct: 237 SWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKI 296
Query: 256 --------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C ++G+++ VF+ +R+K+++ WNS+ LA HG A E+
Sbjct: 297 IEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEES 356
Query: 296 LGMFDRMTYENVRPN 310
LG+F M V P+
Sbjct: 357 LGLFREMKMTKVCPD 371
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 165 EMPERKFAT--WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
EM + K +T N ++D YA+ + +F + D+ SW ++I+ + + E+L
Sbjct: 298 EMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESL 357
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG-----------------RGIQIYCRS 260
F + K + D+VT VL+AC+H G +D G R
Sbjct: 358 GLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDM 417
Query: 261 LGRSLLVFFKLR-------EKNLLCWNSITEALAIHG 290
LGR+ L+ E N + W S+ A +HG
Sbjct: 418 LGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHG 454
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 53/348 (15%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
++F+++ ++ R + + L+ C +I + ++A I++T + D F+ + I C+
Sbjct: 13 STFRRDPDSNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCS 72
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVL-----LT 121
+ +DY VF + PNV++Y A F S ++ Y M+ VL +T
Sbjct: 73 T-LDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 122 TV------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
+V H QV K GF S V M++ Y S + +++ +FDEMP+R
Sbjct: 132 SVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKK----MFDEMPDR 187
Query: 170 KFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
MI+ Y+ + A LF + D WT MI +NK+ +AL+ F + +
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLG 262
+++ T VLSAC+ LGAL+LGR + + C +
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF +R+K+++ +N++ LA+HG + EA+ F M RPN
Sbjct: 308 EARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPN 355
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R ++ +F M D+ S+ TMI+ + + EA++ F G
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+QVT+ +L+AC+H G LD+G
Sbjct: 354 PNQVTLVALLNACSHGGLLDIG 375
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L++CS++KEL ++ ++K + ++ +S+ + YT +VF + PN
Sbjct: 17 LERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTV 76
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQV 127
+++ A+S+ P A+ Y ML V LL +H +
Sbjct: 77 IWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHI 136
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GF V+ +++ Y+ S + + LF+++P R +WN MID Y + L
Sbjct: 137 IKRGFGLEVYATNSLLRVYAISGNI----QSAHVLFNQLPTRDIVSWNIMIDGYIKFGNL 192
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+F MP ++ SWTTMI + + +EAL + +G D +T++ LSAC
Sbjct: 193 DMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSAC 252
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LGAL+ G+ I Y C + ++LLVF KL +K + W
Sbjct: 253 AGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWT 312
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+I LAIHG EAL F +M + PN
Sbjct: 313 AIIGGLAIHGKGREALDWFTQMQKAGINPN 342
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 176 TMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ D Y + E L+F+K+ + +WT +I + + + REALD F + +K+G
Sbjct: 282 VLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINP 341
Query: 231 DQVTMATVLSACAHLGALDLGRGI 254
+ +T +L+AC+H G + G+ +
Sbjct: 342 NSITFTAILTACSHAGLTEEGKSL 365
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 61/331 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C + K L ++A I+++ + D L ++ I ++ I Y IL+F Q+Q P F
Sbjct: 34 LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGR-IAYAILLFYQIQNPCTFT 92
Query: 94 YH------AFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQ 126
++ + L QA+ Y M+ + L VHG
Sbjct: 93 WNLIIRANTINGLSE--QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ K GFS VFVQ ++D Y R + ++F++M R +W T+I +
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGH----TRFALKVFEKMRVRNVVSWTTVISGLISCGD 206
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L +F+++P+ ++ SWT MI Y +N+Q EAL+ F + + ++ TM +++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C +G L LGRGI Y C S+ ++ VF + K+L W
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NS+ +L +HG EAL +F M NV+P+
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 55/212 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K GF + V ++D Y+ + VS+++FD M E+ +WN+MI YA
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL----VSKKVFDWMEEKDDISWNSMIAVYA 1328
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSA 241
Q+ EAL+ F+ + G + VT++ VL A
Sbjct: 1329 --------------------------QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLA 1362
Query: 242 CAHLGALDLGRGIQ--------------------IYCRSLGRSLLV---FFKLREKNLLC 278
CAH GAL G+ I +YC+ GR + F +++EKN+
Sbjct: 1363 CAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKC-GRVEMAKKTFDRMKEKNVKS 1421
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ +HG A EAL +F +M V+PN
Sbjct: 1422 WTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 1453
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 60/209 (28%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q + GF + +FV +A++D YS + ++R
Sbjct: 1165 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDAR--------------------------- 1197
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL----DAFNKTKKSGTGS----DQVTM 235
LF+++P ++ SWT+MIT Y QN+Q AL D + + G+ D V M
Sbjct: 1198 ---ALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVM 1254
Query: 236 ATVLSACAHLGALDLGRGIQIYCR--------SLGRSLL--------------VFFKLRE 273
+VLSAC+ + + G+ + +G +L+ VF + E
Sbjct: 1255 VSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEE 1314
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM 302
K+ + WNS+ A G + EAL +F M
Sbjct: 1315 KDDISWNSMIAVYAQSGLSGEALEVFHGM 1343
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 107 IAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
IA Y + L HG V G +A++ +++ + + ++
Sbjct: 1324 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMD 1383
Query: 167 PERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
E ++ID Y + +A+ F++M +++SWT M+ Y + + +EALD F
Sbjct: 1384 LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFY 1443
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLG 251
K ++G + +T +VL+AC+H G ++ G
Sbjct: 1444 KMVRAGVKPNYITFVSVLAACSHAGLVEEG 1473
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ + +F MP + +W +MITS + +EAL+ F++ ++ D
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 232 QVTMATVLSACAHLGALDLG 251
+T VL AC H+ + G
Sbjct: 358 AITFIGVLCACVHIKNVKEG 377
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 160/329 (48%), Gaps = 57/329 (17%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY 94
K C+++K+L+ +++ ++KT D A + ++FC S I+Y LVF Q+Q PN+F +
Sbjct: 30 KNCTTMKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAW 89
Query: 95 H----AFSSLRHPLQAIAFYLYMLR------------------AEVLLTT----VHGQVW 128
+ FS P +I+ Y+ ML A++ L + +HG++
Sbjct: 90 NTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMI 149
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K G + F++ ++ + Y N F S +R++FD + WNTMI A+ +
Sbjct: 150 KLGLENDSFIRNTIL--FMYVNCGFTSE--ARKVFDRGMDFDIVAWNTMIMGVAKCGLVD 205
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF+KM + SW +MI+ Y +N +F +AL+ F K + + TM ++L+ACA
Sbjct: 206 ESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACA 265
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LGA+ G I Y C S+ +++ VF + L CWNS
Sbjct: 266 CLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNS 325
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA++G +EAL +F + ++RP+
Sbjct: 326 MILGLAMNGQENEALQLFSVLQSSDLRPD 354
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 157 RVSRRLFDEMPERKFA----TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
R + D M ++KF +ID Y++ + +F P + W +MI
Sbjct: 271 RQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGL 330
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+ N Q EAL F+ + S D V+ VL+AC H G +D
Sbjct: 331 AMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVD 372
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 151/332 (45%), Gaps = 61/332 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C + K L ++A I+++ + D L ++ I ++ I Y IL+F Q+Q P F
Sbjct: 34 LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGR-IAYAILLFYQIQNPCTFT 92
Query: 94 YH------AFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQ 126
++ + L QA+ Y M+ + L VHG
Sbjct: 93 WNLIIRANTINGLSE--QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ K GFS VFVQ ++D Y R + ++F++M R +W T+I +
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCG----HTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L +F+++P+ ++ SWT MI Y +N+Q EAL+ F + + ++ TM +++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C +G L LGRGI Y C S+ ++ VF + K+L W
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
NS+ +L +HG EAL +F M NV+P+
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 30/165 (18%)
Query: 175 NTMIDAYARLAELLFNK-----MPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGT 228
NT++DAYA+ + L +K M D SW +MI Y+Q+ EAL+ F+ + G
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCRSLGRSLLV- 267
+ VT++ VL ACAH GAL G+ I +YC+ GR +
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKC-GRVEMAK 2281
Query: 268 --FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +++EKN+ W ++ +HG A EAL +F +M V+PN
Sbjct: 2282 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 2326
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 60/209 (28%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q + GF + +FV +A++D YS + ++R
Sbjct: 2038 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDAR--------------------------- 2070
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL----DAFNKTKKSGTGS----DQVTM 235
LF+++P ++ SWT+MIT Y QN+Q AL D + + G+ D V M
Sbjct: 2071 ---ALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVM 2127
Query: 236 ATVLSACAHLGALDLGRGIQIYCR--------SLGRSLL--------------VFFKLRE 273
+VLSAC+ + + G+ + +G +L+ VF + E
Sbjct: 2128 VSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEE 2187
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM 302
K+ + WNS+ A G + EAL +F M
Sbjct: 2188 KDDISWNSMIAVYAQSGLSGEALEVFHGM 2216
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 107 IAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
IA Y + L HG V G +A++ +++ + + ++
Sbjct: 2197 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMD 2256
Query: 167 PERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
E ++ID Y + +A+ F++M +++SWT M+ Y + + +EALD F
Sbjct: 2257 LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFY 2316
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLG 251
K ++G + +T +VL+AC+H G ++ G
Sbjct: 2317 KMVRAGVKPNYITFVSVLAACSHAGLVEEG 2346
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ + +F MP + +W +MITS + +EAL+ F++ ++ D
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 232 QVTMATVLSACAHLGALDLG 251
+T VL AC H+ + G
Sbjct: 358 AITFIGVLCACVHIKNVKEG 377
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 166/381 (43%), Gaps = 100/381 (26%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQM 86
H A +KCSS++ L+ ++A I+ + + ISFC + Y +F Q+
Sbjct: 115 HCPARLCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQI 174
Query: 87 QEPNVFVYH----AFSSLRHPLQAIAFYLYM---------------LRA--------EVL 119
+PN F+Y+ +S+ P+ A+ + M L+A E +
Sbjct: 175 PQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAV 234
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------- 158
L VHG K G S VFVQ A++ Y +R++
Sbjct: 235 L--VHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGV 292
Query: 159 ----------------------SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNK 191
++ +FD E+ +W +MI AYA+ +A +F++
Sbjct: 293 KIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 352
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP ++ SW +MI+ Y + Q+REALD FNK + S D+ T+ ++L+AC+ LG L +G
Sbjct: 353 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 412
Query: 252 R-------------GIQIY---------CRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ G+ +Y C + +L +F ++ KNL+ WN I ALA+H
Sbjct: 413 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 472
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G EA+ +F+ M + P+
Sbjct: 473 GCGLEAIKLFEEMQADGTLPD 493
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+N++ID YA+ + +F +MP ++ SW +I + + + EA+ F + + GT
Sbjct: 431 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 490
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
D++T+ +LSAC+H G +D+G
Sbjct: 491 LPDEITLTGLLSACSHSGLVDMG 513
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 135/260 (51%), Gaps = 42/260 (16%)
Query: 82 VFPQMQEPNVFV-YHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT 140
++ QM+ N H F+ L A A + L A++L H K+GF S V T
Sbjct: 69 IYSQMRSRNCTGNQHTFTFL---FAACASFFSPLHAQML----HTHFKKSGFESDVIALT 121
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
A+VD Y + RV FDE+P R TWN +I Y+R ++ +F MP
Sbjct: 122 ALVDMYCKLGMVAFAHRV----FDEIPVRDIPTWNALIAGYSRCGDMEGALKIFKLMPDR 177
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
++ SWT MI+ YSQN ++ +AL+ F K K++G ++VT+A++L ACA+LGAL++G I
Sbjct: 178 NVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRPNEVTIASILPACANLGALEVGDRI 237
Query: 255 QIYCRSLG--RSLLVFFKLRE----------------------KNLLCWNSITEALAIHG 290
+ Y R G R+L V L E +NL WNS+ LAIHG
Sbjct: 238 ETYARENGLLRNLYVSNALLEMYARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHG 297
Query: 291 FAHEALGMFDRMTYENVRPN 310
+H+AL +++RM E + P+
Sbjct: 298 RSHDALHLYNRMLIEGIAPD 317
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 169 RKFATWNTMIDAYAR-----LAELLFNKMPA--WDIRSWTTMITSYSQNKQFREALDAFN 221
R N +++ YAR +A +F+K+ ++ SW +MI + + + +AL +N
Sbjct: 248 RNLYVSNALLEMYARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYN 307
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALD 249
+ G D VT +L AC H G L+
Sbjct: 308 RMLIEGIAPDDVTFVGILLACTHGGMLN 335
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 154/359 (42%), Gaps = 82/359 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH--FIDYTILVFPQMQEPNVF 92
++ S+ E++ +A ++KT D F A + ++F + + Y + ++ PN F
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 93 ----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
V A+++ P A+ + ML V +HG
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SR 160
K+G + VFV+ +V+ Y S F +R+V +R
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226
Query: 161 RLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
LFDEM ER +WN MI YA + A+ +F+ MP D+ SW M+T+Y+ + E
Sbjct: 227 ALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNE 286
Query: 216 ALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
L+ FNK T D T+ +VLSACA LG+L G + +Y
Sbjct: 287 VLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALV 346
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C + ++L VF ++++ WNSI L++HG +AL +F M YE +PNG
Sbjct: 347 DMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + K+G F+ TA+VD YS K ++ V
Sbjct: 326 VHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEV------------------------ 361
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
F D+ +W ++I+ S + ++AL+ F++ G + +T VLSAC
Sbjct: 362 ------FRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSAC 415
Query: 243 AHLGALDLGR 252
H+G LD R
Sbjct: 416 NHVGMLDQAR 425
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 58/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L++ S E + + A+I+ + F+ + + FC + +DY +F Q+ PNVF+
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFC-DKIEDMDYATRLFNQVSNPNVFL 75
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHGQV 127
Y+ A++ I Y +LR L VHG +
Sbjct: 76 YNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G V + A++D Y + ++ +V FDEM ER +WN+++ YARL ++
Sbjct: 136 CKFGPRFHVVTENALIDMYMKFDDLVDAHKV----FDEMYERDVISWNSLLSGYARLGQM 191
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+ M I SWT MI+ Y+ + EA+D F + + +G D++++ +VL +C
Sbjct: 192 KKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LG+L+LG+ I +Y C + +++ +F ++ K+++ W+
Sbjct: 252 AQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWS 311
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ A HG AH A+ F+ M V+PNG
Sbjct: 312 TMISGYAYHGNAHGAIETFNEMQRAKVKPNG 342
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
++ N +I+ Y++ + LF +M D+ SW+TMI+ Y+ + A++ FN+
Sbjct: 274 KQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
+++ + +T +LSAC+H+G G
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGMWQEG 361
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 160/339 (47%), Gaps = 64/339 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID-YTILVFPQMQE 88
I L C ++ +++ V+A I+ + C++ + I T +D Y + +F Q+
Sbjct: 49 IVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNY 108
Query: 89 PNVFVYHAFSSLRHPL------QAIAFYLYMLRAEVLLTT-------------------- 122
PN F+Y+A +R L ++ FY M + V+ +
Sbjct: 109 PNPFLYNAL--IRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGR 166
Query: 123 -VHGQ-VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+HGQ + GF + V +M+D Y F E R++FDEMP R +W +I A
Sbjct: 167 QIHGQTILVGGFGEDLHVGNSMIDMYIKCG-FLE---CGRKVFDEMPNRDVISWTELISA 222
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y + + LF+ +P D+ +WT M++ ++QN + REA+ F K ++ G +D++T+
Sbjct: 223 YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITL 282
Query: 236 ATVLSACAHLGAL-------DLGRG---------------IQIY--CRSLGRSLLVFFKL 271
V+SACA LGA D+ I +Y C S+G + VF +
Sbjct: 283 IGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGM 342
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+E+N+ ++S+ A+HG H+A+ +FD M ++PN
Sbjct: 343 KERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPN 381
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y++ + +F M ++ S+++MI ++ + + +A+ F++ K+
Sbjct: 320 SALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIK 379
Query: 230 SDQVTMATVLSACAHLGALDLG 251
++VT VL+AC+H G ++ G
Sbjct: 380 PNRVTFIGVLTACSHAGMVEQG 401
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 157/369 (42%), Gaps = 96/369 (26%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
+K C S+ +L+ +++ + T + + Q I+FC ++Y +VF M PN F
Sbjct: 26 IKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHF 85
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
V++ +S + P A++ Y ML V+ +H +
Sbjct: 86 VWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHI 145
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR---- 183
K GFSS VFVQ A++ YS S + V+R +FD + TWN MI Y R
Sbjct: 146 VKLGFSSNVFVQNALIHLYSLSGEV----SVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201
Query: 184 ---------------------LAELL-------------------FNKMPAWDIRSWTTM 203
L +L F+KMP D SWT M
Sbjct: 202 DESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFVSWTAM 261
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------ 257
I Y Q +F+E L F + + + D+ TM ++L+ACAHLGAL+LG I+ Y
Sbjct: 262 IDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEI 321
Query: 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
C ++ +++ +F + ++ + W ++ LAI+G+ EAL MF +
Sbjct: 322 KIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQ 381
Query: 302 MTYENVRPN 310
M ++ P+
Sbjct: 382 MLKASITPD 390
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 160/342 (46%), Gaps = 61/342 (17%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKT----NANLDCFLAKQFISFCTSRFHF 75
TS F + A+ + K S+ L ++A++++ N L+ L + + +
Sbjct: 40 TSDRFQEVERFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGR----- 94
Query: 76 IDYTILVFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEV---------LLTT 122
+D ++ VF EPNVF + H+ R +A +Y ML V +L +
Sbjct: 95 LDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKS 154
Query: 123 --------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+H Q K G S ++V+T +VD Y+ +R+LFD+MPER +
Sbjct: 155 CSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVV----CARQLFDKMPERSLVSL 210
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
TM+ Y+++ EL LF M D+ W MI Y+Q+ E+L F + +
Sbjct: 211 TTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI 270
Query: 230 SDQVTMATVLSACAHLGALDLGR---------GIQI-------------YCRSLGRSLLV 267
++VT+ VLSAC LGAL+ GR GIQI C SL + LV
Sbjct: 271 PNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLV 330
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
F ++R+K+++ WNS+ A+HGF+ AL +F+ MT +P
Sbjct: 331 FDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKP 372
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 95/266 (35%), Gaps = 75/266 (28%)
Query: 69 CTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTV- 123
C S+ +D +F M+E +V ++ ++ P +++ + ML A+ + V
Sbjct: 216 CYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVT 275
Query: 124 --------------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
H + G V V TA++D YS ++R
Sbjct: 276 VLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDAR------- 328
Query: 164 DEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
L+F+++ D+ +W +MI Y+ + + AL F +
Sbjct: 329 -----------------------LVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEM 365
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLL 277
++G +T +LSAC H G ++ GR FF+L E +
Sbjct: 366 TETGHKPTDITFIGILSACGHGGLVEEGRS--------------FFRLMRDKYGIEPKIE 411
Query: 278 CWNSITEALAIHGFAHEALGMFDRMT 303
+ + L G EA G+ MT
Sbjct: 412 HYGCMVNLLGRAGHLEEAYGLVKNMT 437
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 67/334 (20%)
Query: 34 LKKCSSIKELEC--VYATIVKTNANLDCFLAKQFI----SFCTSRFHFIDYTILVFPQMQ 87
LK C+ I + C V+A ++K + D F++ I FC + + VF +M
Sbjct: 803 LKACARISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCE-----LGFARKVFDEMS 857
Query: 88 EPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEV-----------LLTTVHGQ------ 126
E ++ +++ + R + + + M A+V L TV G+
Sbjct: 858 ERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDA 917
Query: 127 ----VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+ +N V++ ++D Y + ++RR+FD M +R +WN MI Y
Sbjct: 918 MIEYIEENKVEVDVYLGNTLIDMYGRRSMV----DLARRVFDRMRDRNMVSWNAMIMGYG 973
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ L LF+ MP D+ SWT+MI+SYSQ QF +A+ F + + D++T+A+
Sbjct: 974 KAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVAS 1033
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VLSACAH+GALD+G + Y C ++ + L VF ++ +++
Sbjct: 1034 VLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRD 1093
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ W S+ LA++G A AL +F M E VRP
Sbjct: 1094 SVSWTSVIAGLAVNGSADSALNLFSLMLREGVRP 1127
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + + +F +M D SWT++I + N AL+ F+ + G
Sbjct: 1067 NALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVR 1126
Query: 230 SDQVTMATVLSACAHLGALDLG 251
T VL ACAH G +D G
Sbjct: 1127 PTHGTFVGVLLACAHAGVVDKG 1148
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA- 243
A LF ++P + W MI +SQ Q EA+ +N + +T +L ACA
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACAR 808
Query: 244 ---------HLGALDLG------------RGIQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
H L LG G +C LG + VF ++ E++L+ WNS+
Sbjct: 809 ISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFC-ELGFARKVFDEMSERDLVSWNSL 867
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPNG 311
E L +F+ M +V+ +
Sbjct: 868 ICGYGRCRRYSEVLVVFEEMRMADVKGDA 896
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 168/382 (43%), Gaps = 81/382 (21%)
Query: 10 ITSFKKN--SFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFIS 67
++ K+N ++ T+ SF+ + + L+KC SI +L+ + + +V T D F + + I+
Sbjct: 31 LSPHKENPINWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIA 90
Query: 68 FCT-SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV---- 118
FC S + +DY + + PN F ++ F +P +A+ Y +L+ +
Sbjct: 91 FCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPD 150
Query: 119 ------------------LLTTVHGQVWKNGFSSPVFVQTAMV------DNYSYSNKFFE 154
+ + + G V GF S +FV A++ + + K F+
Sbjct: 151 NYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFD 210
Query: 155 SRRV-------------------SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFN 190
V +R+LFD M + +W TM+ YA+ +A LF+
Sbjct: 211 KSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFD 270
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+MP D+ W MI Y + +EAL FN+ + D+VTM + LSAC+ LGALD+
Sbjct: 271 EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 330
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G I Y C + +++ VF +L +N L W +I LA+
Sbjct: 331 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 390
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG AH A+ F M +V P+
Sbjct: 391 HGNAHGAIAYFSEMIDNSVMPD 412
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +ID YA+ ++ +F ++P + +WT +I+ + + A+ F++ +
Sbjct: 348 ALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDN 407
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
D+VT +LSAC H G ++ GR
Sbjct: 408 SVMPDEVTFLGLLSACCHGGLVEEGR 433
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 171/367 (46%), Gaps = 75/367 (20%)
Query: 2 FVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFL 61
++ + A+ S N F TS ++IH N LK ++K+ C ++ T N D
Sbjct: 1 MIQRINALSLSSGLNWFVTS---LKIH--GNNLK---TLKQSHCY---MIITGLNRDNLN 49
Query: 62 AKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHP-LQAIAFYLY---- 112
+FI C++ H + Y VF PN ++++ A S L P +IA +Y
Sbjct: 50 VAKFIEACSNAGH-LRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLW 108
Query: 113 -------------MLRAEVLLTTV------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
+L+ V ++ V HGQV GF S V V T ++ Y
Sbjct: 109 ALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLG 168
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR---SWTTMIT 205
++R+ +FDEM + WN ++ Y ++ E+ L MP W +R SWT +I+
Sbjct: 169 DARK----MFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCW-VRNEVSWTCVIS 223
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RG--- 253
Y+++ + EA++ F + D+VT+ VLSACA LG+L+LG RG
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR 283
Query: 254 --------IQIYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
I +Y +S + ++L VF + E+N++ W +I LA HG EAL MF+RM
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMV 343
Query: 304 YENVRPN 310
VRPN
Sbjct: 344 KAGVRPN 350
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R + N +ID YA+ + +F + ++ +WTT+I + + EAL FN+
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGR 252
K+G + VT +LSAC+H+G +DLG+
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGK 371
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 116/216 (53%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +N + + AM+D Y+ S ++RLFD+MPE+ +W TM+ YA
Sbjct: 259 VHSYIERNRIGESLTLSNAMLDMYTKCG----SVEDAKRLFDKMPEKDIVSWTTMLVGYA 314
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMA 236
++ E +F+ MP DI +W +I++Y Q + +EAL+ F++ + S T D+VT+
Sbjct: 315 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
+ LSACA LGA+DLG I +Y C L ++L+VF + K
Sbjct: 375 STLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK 434
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W+++ LA+HG +A+ +F +M + V+PN
Sbjct: 435 DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPN 470
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 50/326 (15%)
Query: 19 PTSVSFIRIHIIANQ-----LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SR 72
P S++ AN + +CS K+L+ ++A +++T D F A + I+ S
Sbjct: 22 PNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSP 81
Query: 73 FHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128
F +DY VF Q+ PN++ ++ A++S +P Q++ +L ML +
Sbjct: 82 FPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLH--------QSPDF 133
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+ F+ P ++ A ++ K F + L ++ N++I YA+ EL
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV-----FILNSLIHFYAKCGELG 188
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F +P D+ SW +MIT++ Q EAL+ F + + + +TM VLSACA
Sbjct: 189 LGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACA 248
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+ GR + Y C S+ + +F K+ EK+++ W +
Sbjct: 249 KKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTT 308
Query: 282 ITEALAIHGFAHEALGMFDRMTYENV 307
+ A G A G+FD M +++
Sbjct: 309 MLVGYAKIGEYDAAQGIFDAMPNQDI 334
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACA 243
A+ +F+++P ++ +W T+I +Y+ + ++L F + +S D+ T ++ A +
Sbjct: 88 AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAAS 147
Query: 244 HLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNS 281
L L G+ I Y C LG VF + ++++ WNS
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNS 207
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ A G EAL +F M +NV+PNG
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNG 237
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y + +L +F+ + D+ W+ MI + + ++A+ F+K ++
Sbjct: 410 SLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKP 469
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT +L AC+H+G ++ GR
Sbjct: 470 NAVTFTNILCACSHVGLVEEGR 491
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 171/393 (43%), Gaps = 116/393 (29%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPN 90
+ L KC+++ +++ ++A I+K+N ++D F+ + IS F R + F Q+Q PN
Sbjct: 25 SDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATN--AFNQVQYPN 82
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAE---------------------VLLTTVHG 125
V +Y+ A S P QA A + M R ++ +VH
Sbjct: 83 VHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHA 142
Query: 126 QVWKNGFSSPVFVQTAMVDNYS--------YSNKFFES---RR----------------- 157
Q+ K GF S VFV +++D+YS + K F S RR
Sbjct: 143 QIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGL 202
Query: 158 --VSRRLFDEMPERKFATWNTMIDAYAR-------------------------------- 183
+R++FDEMPE+ +WNTM+D Y +
Sbjct: 203 YEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKA 262
Query: 184 ----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+A +LF+KMP ++ SWT +++ +++ REA+ F++ +K+ D T+ ++L
Sbjct: 263 GDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSIL 322
Query: 240 SACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLL 277
+ACA G L LG I C L + VF ++ K+++
Sbjct: 323 AACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVV 382
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ + LA+HG +AL +F RM E PN
Sbjct: 383 SWNAMLQGLAMHGHGVKALELFKRMKEEGFSPN 415
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ L +FN + D+ SW M+ + + +AL+ F + K+ G
Sbjct: 354 NALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFS 413
Query: 230 SDQVTMATVLSACAHLGALDLG 251
++VTM VL AC H G +D G
Sbjct: 414 PNKVTMIGVLCACTHAGLIDDG 435
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 158/347 (45%), Gaps = 72/347 (20%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILV 82
IR H + L C +++ L ++A ++K + + + I FC HF + Y I V
Sbjct: 31 IRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISV 90
Query: 83 FPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
F +QEPN+ ++ HA SS P+ A+ Y+ M+ +L +
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK 148
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+HG V K G ++V T+++ Y + + ++ +V FD+ P R ++
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV----FDKSPHRDVVSYT 204
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+I YA A+ LF+++P D+ SW MI+ Y++ ++EAL+ F K+
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
D+ TM TV+SACA G+++LGR + ++ C L + +F
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Query: 269 FKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
+L K+++ WN++ I G+ H EAL +F M PN
Sbjct: 325 ERLPYKDVISWNTL-----IGGYTHMNLYKEALLLFQEMLRSGETPN 366
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ EL LF ++P D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A + +F RM ++P+
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPD 469
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN + + SW MI ++ + + + D F++ +K G
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Query: 231 DQVTMATVLSACAHLGALDLGRGI 254
D +T +LSAC+H G LDLGR I
Sbjct: 469 DDITFVGLLSACSHSGMLDLGRHI 492
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 61/346 (17%)
Query: 18 FPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77
FP S +F + A ++ SS+ + ++ ++K + D F++ I F +S +D
Sbjct: 128 FPNSYTFPFVIKAATEV---SSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSS-LGDLD 183
Query: 78 YTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFY--LYMLRAEVLLTTVHGQV---- 127
LVF ++ E ++ +++ F P +A+ + + M A T+ G +
Sbjct: 184 SAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
Query: 128 ---------W------KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
W +NG + + AM+D Y ++RR LFD+M E+
Sbjct: 244 KRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARR----LFDKMEEKDIV 299
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KS 226
+W TMID YA++ + +F+ MP DI +W +I+SY QN + +EAL F + +
Sbjct: 300 SWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNK 359
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
T ++VT+A+ L+ACA LGA+DLG I +Y C L ++
Sbjct: 360 NTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKA 419
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L VF+ + +++ W+++ LA+HG A+ +F +M V+PN
Sbjct: 420 LEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPN 465
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 53/326 (16%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SR 72
++ S P++V + + KC++ K L+ ++A +++T D A + + C S
Sbjct: 25 EQKSNPSTVPIL--------IDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSS 76
Query: 73 FHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128
+DY VF Q+ PN++ ++ AF+S P+Q + ++ ML Q +
Sbjct: 77 PSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLH--------ESQRF 128
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
N ++ P ++ A + + + + + N++I Y+ L +L
Sbjct: 129 PNSYTFPFVIKAA-----TEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLD 183
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F+K+ DI SW +MI+ + Q EAL F + K ++VTM VLSACA
Sbjct: 184 SAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
Query: 244 HLGALDLGR---------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNS 281
L+ GR GI I C SL + +F K+ EK+++ W +
Sbjct: 244 KRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTT 303
Query: 282 ITEALAIHGFAHEALGMFDRMTYENV 307
+ + A G A +FD M E++
Sbjct: 304 MIDGYAKVGDYDAARRVFDVMPREDI 329
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 161 RLFDEMPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIR-----SWTTMITSYSQN 210
++FD++P TWNT+I A+A + L+F +M R ++ +I + ++
Sbjct: 85 KVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEV 144
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270
K+ GSD +++ + LG LD + LVF K
Sbjct: 145 SSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLD-------------SAYLVFSK 191
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ EK+++ WNS+ G EAL +F RM EN RPN
Sbjct: 192 IVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPN 231
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 171 FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
F ++ID Y++ L +F + D+ W+ MI + + R A+D F+K ++
Sbjct: 400 FHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQE 459
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR 252
+ + VT +L AC+H G +D GR
Sbjct: 460 TKVKPNAVTFTNLLCACSHSGLVDEGR 486
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 145/354 (40%), Gaps = 81/354 (22%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVYH 95
+SI EL +A I+K+ F A + I+ ++ H I Y +F ++ PN ++++
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKN 130
A+++ P A+ + ML A VL +HG V K
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKT 137
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRR---------------------------LF 163
G +F+Q ++ Y+ ++R + R LF
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLF 197
Query: 164 DEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
DEM ER +WN MI Y + L +F + P ++ SW MIT YS +F E L
Sbjct: 198 DEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLV 257
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------- 257
F + +G D T+ +VLSACAH+GAL G + Y
Sbjct: 258 LFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYS 317
Query: 258 -CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++L VF K++ WNSI L+ HG AL +F M E +PN
Sbjct: 318 KCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPN 371
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + KNG S FV TA+VD YS ++ V
Sbjct: 293 VHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV------------------------ 328
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
FN DI +W ++I+ S + + AL F++ G ++VT VLSAC
Sbjct: 329 ------FNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSAC 382
Query: 243 AHLGALDLGR 252
+ G LD GR
Sbjct: 383 SRAGLLDEGR 392
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 42/258 (16%)
Query: 81 LVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT 140
L P PN ++Y + L+AIA L VH V K+G + + + T
Sbjct: 103 LSLPSAPNPNEYIYTSLIKACAGLEAIADGL----------KVHAVVIKSGLDNNIHLGT 152
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
++VD Y KF E + +FDEMP R +WNTM+ Y +L +F++M
Sbjct: 153 SLVDMYF---KFREPASAGQ-VFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLER 208
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDL---- 250
D+ SW MI Y QN ++ +A++ F++ +K G D VT+ +VLSACAH+GALD
Sbjct: 209 DVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWI 268
Query: 251 -------GRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
GRG+ +Y C ++ + +F +RE++++ W+++ HG A
Sbjct: 269 DRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDA 328
Query: 293 HEALGMFDRMTYENVRPN 310
EA G + +M V+PN
Sbjct: 329 DEAFGYYSKMLECGVKPN 346
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +F+ M D+ SW+TMI + EA ++K + G
Sbjct: 285 NALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVK 344
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCR 259
++VT +LSAC+H G +D +GI+++ R
Sbjct: 345 PNEVTFMGLLSACSHAGLVD--KGIELFSR 372
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 24/147 (16%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTGSDQVTMATVLSAC 242
A+L+F ++P ++ SW +I ++ + AL+ FN+ + S ++ +++ AC
Sbjct: 64 AQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKAC 123
Query: 243 AHLGALDLGRGIQ-IYCRS-------LGRSLL-VFFKLRE-------------KNLLCWN 280
A L A+ G + + +S LG SL+ ++FK RE ++++ WN
Sbjct: 124 AGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWN 183
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ + G A +FD+M +V
Sbjct: 184 TMVSGYCLCGDLESARRVFDQMLERDV 210
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 57/329 (17%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVFV 93
+KC +K+L+ +A ++ D F + ++FC+ H + + +F Q+Q P + +
Sbjct: 13 EKCRHMKQLKEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICI 72
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQVW 128
+ AF + I Y ML + L + HGQ
Sbjct: 73 CNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSV 132
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL---- 184
K GF +FV ++ YS F + R +R +FDEMP +W MI YA++
Sbjct: 133 KLGFWFDIFVGNTLIAMYSS----FGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVE 188
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A +LF++ P D W ++I+ Y QN F+E L F + +G D+ + ++L ACA
Sbjct: 189 TARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACA 248
Query: 244 HLGALDLGRGIQIYCRSLGRSLLV----------------------FFKLREKNLLCWNS 281
HLGA+++G + Y LG L V F + +++ +CWN+
Sbjct: 249 HLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNA 308
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +A++G AL +F M V+P+
Sbjct: 309 MISGMAMNGDGDNALRLFSEMEKAGVKPD 337
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ L LF+ M D W MI+ + N AL F++ +K+G D
Sbjct: 278 LIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPD 337
Query: 232 QVTMATVLSACAHLG 246
+T + +AC++ G
Sbjct: 338 DITFIAIFTACSYSG 352
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 60/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L C+ I +++ V+A I + CF LAK + Y LVF Q++ PN F
Sbjct: 46 LHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPF 105
Query: 93 VYHAF---SSLRHP-LQAIAFYLYMLRAEV---------------------LLTTVHGQ- 126
++ A +L+ P ++++ Y M R + L VH Q
Sbjct: 106 LWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQT 165
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ GF S ++V ++D Y R+FDEM +R +W ++I AYA++
Sbjct: 166 ILIGGFGSDLYVGNTLIDMYVKCGCL----GCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF+ +P D+ +WT M+T Y+QN + REAL+ F + + +G +D+VT+ V+SA
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281
Query: 242 CAHLGALDL-----------GRG-----------IQIY--CRSLGRSLLVFFKLREKNLL 277
CA LGA G G I +Y C S+ + VF ++ E+N+
Sbjct: 282 CAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVY 341
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++S+ A+HG A A+ +FD M ++PN
Sbjct: 342 SYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPN 374
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 167 PERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
P + +ID YA+ + +F +M ++ S+++MI ++ + A++ F+
Sbjct: 305 PTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD 364
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ K+ ++VT VL+AC+H G ++ G+
Sbjct: 365 EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQ 395
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 153/340 (45%), Gaps = 65/340 (19%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNAN----LDCFLAKQFISFCTSRFHFIDYT 79
FI + +A + K +I L ++A + + + L+ L + + S +DY+
Sbjct: 27 FISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGR-----LDYS 81
Query: 80 ILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT----------- 122
+ +F + Q P+VF + HA L QA+ FY ML V
Sbjct: 82 VALFGRTQNPSVFFWTAIIHGHALRGLHE--QALNFYAQMLTQGVEPNAFTFSSILKLCP 139
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+H Q K GF S ++V+T ++D Y+ +++ LFD MPE+ +
Sbjct: 140 IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQ----LFDTMPEKSLVSLTA 195
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
M+ YA+ EL LF+ M D W MI Y+QN EAL F + K+ +
Sbjct: 196 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 255
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
+VT+ +VLSAC LGAL+ GR + Y C SL + LVF
Sbjct: 256 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 315
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
K+ +K+++ WNS+ A+HGF+ EAL +F M + P
Sbjct: 316 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHP 355
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 60/229 (26%)
Query: 48 ATIVKTNANLDCFLAKQFISF-----CTSRFHFIDYTILVFPQMQEPNVFVYH----AFS 98
+V D K +S C ++ +D ++F M+E + ++ ++
Sbjct: 173 GDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYT 232
Query: 99 SLRHPLQAIAFYLYMLRA-----EVLLTTV----------------HGQVWKNGFSSPVF 137
P +A+ + ML+A EV + +V H + NG V
Sbjct: 233 QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVH 292
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
V TA+VD YS ++R L+F+K+ D+
Sbjct: 293 VGTALVDMYSKCGSLEDAR------------------------------LVFDKIDDKDV 322
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+W +MI Y+ + +EAL F + G +T +LSAC H G
Sbjct: 323 VAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 371
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 158/371 (42%), Gaps = 85/371 (22%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC--TSRFHFIDYTILV 82
I + + + L KC S+ EL ++A ++KTN F + I+FC + +DY V
Sbjct: 4 ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63
Query: 83 FPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR------------AEVLLT----- 121
F ++Q PN F++ A FS +P++++ Y ML VL
Sbjct: 64 FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123
Query: 122 ------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRR-------------- 161
VHGQV K FV +MV Y + +RRV R
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183
Query: 162 -------------LFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTM 203
LFDEMPER + N MID Y + LAE +F M D+ +WT+M
Sbjct: 184 GYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSM 243
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------ 257
I++Y QN+ +ALD F + G D + +VLSA A LG ++ G+ + Y
Sbjct: 244 ISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKI 303
Query: 258 -----------------CRSLGRSLLVFFKL-REKNLLCWNSITEALAIHGFAHEALGMF 299
C + + VF + +N+ WNS+ LAIHG A EAL +F
Sbjct: 304 ELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIF 363
Query: 300 DRMTYENVRPN 310
M ++ PN
Sbjct: 364 VEMERMDIEPN 374
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
+I W +MI+ + + REALD F + ++ +++T +LS C+H G ++ G Q
Sbjct: 339 NIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG---Q 395
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
Y S+ + +++ + + + G +ALG+ M +E
Sbjct: 396 FYFESMHEKYKIVPRIQH-----YGCMIDLFGRAGRLEDALGVIQNMPFE 440
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 60/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
L C+ +++ V+A I++ + ++ + I T Y +LVF Q+ PN F
Sbjct: 49 LHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPF 108
Query: 93 VYHAF---SSLRHPL-QAIAFYLYMLRAEV---------------------LLTTVHGQ- 126
++ A +L+ L ++ FY M R V L VH Q
Sbjct: 109 LWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT 168
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ GF+S ++V +M+D Y +R++FDEM ER +W +I AYA+ +
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFL----GCARKVFDEMSERDVVSWTELIVAYAKYGD 224
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF+ +P+ D+ +WT M+T Y+QN + +EAL+ F K + G +D+VT+A V+SA
Sbjct: 225 MESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISA 284
Query: 242 CAHLGAL-------DL----GRG-----------IQIY--CRSLGRSLLVFFKLREKNLL 277
CA LGA+ D+ G G I +Y C S + VF ++E+N+
Sbjct: 285 CAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVF 344
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++S+ A+HG AH AL +F M +RPN
Sbjct: 345 SYSSMILGYAMHGRAHSALQLFHDMLKTEIRPN 377
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 167 PERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
P + +ID Y++ A +F M ++ S+++MI Y+ + + AL F+
Sbjct: 308 PSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH 367
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL--REKNLLCW 279
K+ ++VT +LSAC+H G ++ GR Q++ + + FF + + C
Sbjct: 368 DMLKTEIRPNKVTFIGILSACSHAGLVEQGR--QLFAK-----MEKFFGVAPSPDHYAC- 419
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + L G EAL + M E PNG
Sbjct: 420 --MVDLLGRAGCLEEALDLVKTMPME---PNG 446
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 168/366 (45%), Gaps = 73/366 (19%)
Query: 2 FVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFL 61
++ + A+ S N F TS ++IH +++K L+ + ++ T N D
Sbjct: 1 MIQRINALSLSSGLNWFVTS---LKIH--------GTNLKTLKQSHCFMIITGLNRDNLN 49
Query: 62 AKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSL-RHPLQAIAFYLY---- 112
+FI C++ H + Y VF PN ++++ A S + +IA +Y
Sbjct: 50 VAKFIEACSNAGH-LRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITVYRKFW 108
Query: 113 -------------MLRAEVLLTTV------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
+L+ V ++ V HGQ GF S V V T ++ YS
Sbjct: 109 AFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLG 168
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW--DIRSWTTMITS 206
++R+V FDEM R WN ++ Y ++ E+ L MP W + SWT +I+
Sbjct: 169 DARKV----FDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISG 224
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RG---- 253
Y+++ + EA++ F + D+VT+ VLSACA LG+L+LG RG
Sbjct: 225 YARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRA 284
Query: 254 -------IQIYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
I +Y +S + ++L VF + E+N++ W +I LA HG EAL MFDRM
Sbjct: 285 VSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVK 344
Query: 305 ENVRPN 310
V+PN
Sbjct: 345 AGVKPN 350
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R + N +ID YA+ + +F + ++ +WTT+IT + + EAL F++
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRM 342
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
K+G + VT +LSAC+H+G +DLG
Sbjct: 343 VKAGVKPNDVTFIAILSACSHVGWVDLG 370
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 157/392 (40%), Gaps = 115/392 (29%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L KC+++ +++ ++A I++ N + D +A + IS S + + VF Q+QEPNV
Sbjct: 25 DLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLIS-ALSLCRQTNLAVRVFNQVQEPNVH 83
Query: 93 V----YHAFSSLRHPLQAIAFYLYMLRAEV---------LLTTVHGQVW----------- 128
+ A + P QA + M R + LL GQ W
Sbjct: 84 LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHI 143
Query: 129 -KNGFSSPVFVQTAMVDNYSYSN--------KFFESR---------------------RV 158
K G SS ++V A++D YS K FE R
Sbjct: 144 EKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRD 203
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFDEMP+R +WNTM+D YAR E+ LF KMP + SW+TM+ YS+
Sbjct: 204 ARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDM 263
Query: 214 REALDAFNKTK---------------------------------KSGTGSDQVTMATVLS 240
A F+K SG D + ++L+
Sbjct: 264 EMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILA 323
Query: 241 ACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLC 278
AC G L LG I C +L ++ VF + +K+L+
Sbjct: 324 ACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ L +HG EA+ +F RM E +RP+
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ L +FN +P D+ SW TM+ + +EA++ F++ ++ G
Sbjct: 354 NALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIR 413
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT VL +C H G +D G
Sbjct: 414 PDKVTFIAVLCSCNHAGLIDEG 435
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 156/339 (46%), Gaps = 65/339 (19%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVFVYH 95
C ++++L+ ++A ++KT D A + + F H +DY +F M PN F Y+
Sbjct: 21 CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80
Query: 96 ----AFSSLRHPLQAIAFYLYML--------------------RAEVLLT--TVHGQVWK 129
A S P A+ ++ M+ RAE L VHG K
Sbjct: 81 TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVK 140
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRV-SRRLF----DEMPERK------FATWNTMI 178
G S FV + +V Y ++ R+ RR+F D + ++K WN MI
Sbjct: 141 FGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMI 200
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
D Y R+ EL LF++MP + SW MI Y+Q+ F+EA++ F + + + + V
Sbjct: 201 DGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYV 260
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ +VL A + LGAL+LG+ + +Y C S+ ++L VF L
Sbjct: 261 TLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGL 320
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++N++ W++I LA+HG A + L F+ M V P+
Sbjct: 321 PKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 359
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID YA+ + +F +P ++ +W+T+I + + + ++ LD F +++G
Sbjct: 298 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM 357
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
VT +LSAC+H G ++ GR
Sbjct: 358 PSDVTYIGLLSACSHAGLVNEGR 380
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 168/359 (46%), Gaps = 82/359 (22%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS--FCTSRFHFIDYTILVFPQMQEPNV 91
L+ + + ++ ++A I+KT+ + + F+ + + F S + + Y VF ++ P+
Sbjct: 10 LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDT 69
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEVL------LTTV----------------HG 125
F+++ A+ + ++P ++++ + M E + L+ V H
Sbjct: 70 FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 129
Query: 126 QVWKNGFSSPVFVQTAMVDNYS----------------------YSNKFFESRRV----- 158
QV K G S +FV+TA+++ Y+ Y+ E RV
Sbjct: 130 QVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINL 189
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+ LFD MPER +WNTMI +A L ++ LF++ D+ SW++MI +Y++ +Q
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
EAL F++ + + D+VTM +VLSAC +GAL +G+ I
Sbjct: 250 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSL 309
Query: 256 ----IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + SL VF + +++ W+++ LA HGF AL F +M E+++PN
Sbjct: 310 VDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPN 368
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE-ALDAFNKTKKSGTG 229
+++D YA+ ++ +FN M D+ +W+ MI + N F E ALD F+K
Sbjct: 308 SLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLA-NHGFGELALDHFSKMISEDIK 366
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT VLSAC+H+G +D G
Sbjct: 367 PNDVTFIGVLSACSHIGLVDEG 388
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 177/411 (43%), Gaps = 114/411 (27%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
TSF K + P S + ++ I+ LK C + +L V+A +++ D FL QFIS
Sbjct: 15 TSFAKTTNPKS--NVSLYSISALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASN 72
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHAF-SSLRHPLQ---AIAFYLYMLRAE--------- 117
S H I Y+ VF ++ P+ F++++ S LQ I+ Y+ M R +
Sbjct: 73 SVAH-ISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFP 131
Query: 118 VLLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------- 158
LL +HG + + G ++V T++V+ Y +R+V
Sbjct: 132 SLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSER 191
Query: 159 --------------------SRRLFDEMPERKFATWN----------------------- 175
++RLFD MPER A+WN
Sbjct: 192 NVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMP 251
Query: 176 --------TMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
TMID YA+ ++L F K P DI +W+ +I+ Y+QN Q EA+ F +
Sbjct: 252 EKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLE 311
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-----------------------CR 259
D+ + +++ AC+ LG LDL + + Y C
Sbjct: 312 MSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCG 371
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ R++ +F K+ +++L+ + S+ + L+IHG +A+ +F+RM E++ P+
Sbjct: 372 NMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPD 422
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 60/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
L C+ +++ V+A I++ + ++ + I T Y +LVF Q+ PN F
Sbjct: 49 LHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPF 108
Query: 93 VYHAF---SSLRHPL-QAIAFYLYMLRAEV---------------------LLTTVHGQ- 126
++ A +L+ L ++ FY M R V L VH Q
Sbjct: 109 LWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT 168
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ GF+S ++V +M+D Y +R++FDEM ER +W +I AYA+ +
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFL----GCARKVFDEMSERDVVSWTELIVAYAKYGD 224
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF+ +P D+ +WT M+T Y+QN + +EAL+ F K + G +D+VT+A V+SA
Sbjct: 225 MESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISA 284
Query: 242 CAHLGAL-------DL----GRG-----------IQIY--CRSLGRSLLVFFKLREKNLL 277
CA LGA+ D+ G G I +Y C S + VF ++E+N+
Sbjct: 285 CAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVF 344
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++S+ A+HG AH AL +F M +RPN
Sbjct: 345 SYSSMILGYAMHGRAHSALQLFHDMLKTEIRPN 377
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 167 PERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
P + +ID Y++ A +F M ++ S+++MI Y+ + + AL F+
Sbjct: 308 PSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH 367
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL--REKNLLCW 279
K+ ++VT +LSAC+H G ++ GR Q++ + + FF + + C
Sbjct: 368 DMLKTEIRPNKVTFIGILSACSHAGLVEQGR--QLFAK-----MEKFFGVAPSPDHYAC- 419
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + L G EAL + M E PNG
Sbjct: 420 --MVDLLGRAGCLEEALDLVKTMPME---PNG 446
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 57/321 (17%)
Query: 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AF 97
EL+ ++A ++KTN+ L + S C F Y L+F + V ++ +F
Sbjct: 30 ELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSF-SYAKLIFQLLDASEVTHWNTCLRSF 88
Query: 98 SSLRHPLQAIAFYL---------------YMLRAEVLL------TTVHGQVWKNGFSSPV 136
+ P AI+ + ++L+A L VHG V K G S +
Sbjct: 89 AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNK 191
F+Q +V Y+ + V+R++FD+MP+R TWN MI ++ + LF +
Sbjct: 149 FLQNMIVHLYALCGEI----GVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAE 204
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP ++RSWT+MI Y+Q + +EA+D F + + +G ++VT+ VL ACA +G L LG
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264
Query: 252 RGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R I + C L + +F + E+ ++ W+++ LA H
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G A +AL +F++M V+PN
Sbjct: 325 GRAEDALALFNKMINTGVKPN 345
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E+ NT+ID Y + L +F+ M + SW+ MI + + + +AL FNK
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+G + VT +L AC+H+G ++ GR
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGR 366
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 57/321 (17%)
Query: 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AF 97
EL+ ++A ++KTN+ L + S C F Y L+F + V ++ +F
Sbjct: 30 ELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSF-SYAKLIFQLLDASEVTHWNTCLRSF 88
Query: 98 SSLRHPLQAIAFYL---------------YMLRAEVLL------TTVHGQVWKNGFSSPV 136
+ P AI+ + ++L+A L VHG V K G S +
Sbjct: 89 AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNK 191
F+Q +V Y+ + V+R++FD+MP+R TWN MI ++ + LF +
Sbjct: 149 FLQNMIVHLYALCGEI----GVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAE 204
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP ++RSWT+MI Y+Q + +EA+D F + + +G ++VT+ VL ACA +G L LG
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264
Query: 252 RGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R I + C L + +F + E+ ++ W+++ LA H
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G A +AL +F++M V+PN
Sbjct: 325 GRAEDALALFNKMINTGVKPN 345
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E+ NT+ID Y + L +F+ M + SW+ MI + + + +AL FNK
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+G + VT +L AC+H+G ++ GR
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGR 366
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 145/330 (43%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
L+KC ++ L+ +A + T + + F + ++FC+ + + Y VF ++ P +
Sbjct: 12 LEKCKNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLC 71
Query: 93 V-----------------YHAFSSLRHPLQAIAFYL--YMLRAEVLL------TTVHGQV 127
+ +H F+ + H Y Y+L+A L VHG
Sbjct: 72 ICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYS 131
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL--- 184
K G +FV +++ YS +R V FDEMP +W+ MI YA++
Sbjct: 132 SKLGLVFDIFVGNSLMAMYSVCGDVIAARHV----FDEMPRLSAVSWSVMISGYAKVGDV 187
Query: 185 --AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A L F++ P D W MI+ Y QN F+E L F + + D+ ++LSAC
Sbjct: 188 DSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSAC 247
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
AHLGALD+G I Y C +L + +F + E++++CWN
Sbjct: 248 AHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWN 307
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ LA+HG AL MF M ++P+
Sbjct: 308 AMISGLAMHGDGASALKMFSEMEKTGIKPD 337
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++D YA+ LA+ LF+ MP DI W MI+ + + AL F++ +K+G
Sbjct: 277 SLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKP 336
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T V +AC++ G G+Q+ + S L + + ++ C + + L+ G
Sbjct: 337 DDITFIAVFTACSYSGMAH--EGLQLLDK---MSSLYEIEPKSEHYGC---LVDLLSRAG 388
Query: 291 FAHEALGMFDRMT 303
EA+ M R+T
Sbjct: 389 LFGEAMVMIRRIT 401
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 60/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L +C+++ L+ ++ V T Q + F + R + Y +F PNVF+
Sbjct: 16 LSRCATLAHLKQLHGRSVVTARAASQSTTFQLLRFASLRLSCLPYARRLFDSTPHPNVFL 75
Query: 94 YHAF--------SSLRHPLQAIAFYLYMLR---------------------AEVLLTTVH 124
Y A + + A+A +L MLR L+ ++H
Sbjct: 76 YSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIH 135
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
K+GF + ++T+++D YS ++R+ LFD + ER +W ++ YAR
Sbjct: 136 SHACKSGFHAYDVIRTSLLDGYSRYGMMLDARK----LFDGLTERNVISWTALVSGYARA 191
Query: 185 AEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
++ LF++MP D+ +W MIT +QN F EA+ ++ G + T++ VL
Sbjct: 192 GKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVL 251
Query: 240 SACAHLGALDLGRGIQIY----CRSLGRSLL------------------VFFKLREKNLL 277
SAC HLG L +G+ + Y C G S++ +F + +++L
Sbjct: 252 SACGHLGMLKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLKEARWMFDEFSDRSLT 311
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ LA+HG + A+ +FD M E + P+
Sbjct: 312 TWNSLINCLALHGHSKSAIAVFDEMRDEGIEPD 344
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 81/357 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFV 93
+ C++I L+ ++A+++ N + ++ I + + + Y +FP + EP+ F+
Sbjct: 21 RSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFM 80
Query: 94 YHAF----SSLRHPLQAIAFYLYM---------------LRAEVLLT------TVHGQVW 128
++ + PL AI+ Y M L+A L VHG+V+
Sbjct: 81 WNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVF 140
Query: 129 KNGFSSPVFVQTAMV------DNYSYSNKFFE-----------------SRR----VSRR 161
+ GF S FV+ ++ + + + F+ +RR V+R+
Sbjct: 141 RLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQ 200
Query: 162 LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREA 216
LFDEMP + +WN MI YA+ E+ LF+++P D+ +W MI Y ++A
Sbjct: 201 LFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQA 260
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI-------------------- 256
L+ F + + G D+VTM ++LSAC LG LD G+ I
Sbjct: 261 LEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALID 320
Query: 257 ---YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ R+L VF +REK++ WNS+ LA HG A +++ +F M +RP+
Sbjct: 321 MYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPD 377
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 28/147 (19%)
Query: 175 NTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ ++ F M D+ +W +++ + + +++ F + +K
Sbjct: 316 NALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIR 375
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSIT 283
D++T VL AC+H G ++ GR +F L E N+ + +
Sbjct: 376 PDEITFVGVLVACSHAGRVEEGR--------------QYFDLMRDEYNIEPNIRHYGCMV 421
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+ L G +EA D M E PN
Sbjct: 422 DLLGRAGLLNEAFDFIDTMKIE---PN 445
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 161/357 (45%), Gaps = 83/357 (23%)
Query: 36 KC-SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVF 92
KC +S + L+ ++A I+++ D +++ + C + HF ID VF + +PNVF
Sbjct: 37 KCNASFQYLKQIHAVILRSGHFEDHYVSGTLLK-CYANPHFKNIDLAFTVFDHVPKPNVF 95
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQV 127
VY+ A P +AI FY M+ A LL +HG V
Sbjct: 96 VYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHV 155
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SR 160
K G + V +++A + Y+ +RR+ ++
Sbjct: 156 IKQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAK 215
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
LF++M +R +WN M+ A+ A LFN M D SW++MI Y + ++E
Sbjct: 216 ELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKE 275
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL- 266
AL+ FN ++ + +++VL+ACA+LGALD GR I Y + LG +L+
Sbjct: 276 ALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVD 335
Query: 267 -------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++EK + WN++ LA+HG A +A+ +F +M E VR N
Sbjct: 336 MYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSN 392
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ L +F M ++ +W MI + + + +A+ F K +K S
Sbjct: 332 ALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRS 391
Query: 231 DQVTMATVLSACAHLGALDLGRGI 254
+++T +L+ACAH G +D G I
Sbjct: 392 NEITFVGLLNACAHKGMVDEGLNI 415
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 33/218 (15%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H K+GF V+ TA+VD Y+ ++R++FDEM R TWN++I Y
Sbjct: 31 VIHTHFIKSGFDFDVYALTALVDMYAKLGVLM----LARQVFDEMTVRDIPTWNSLIAGY 86
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTM 235
+R ++ LF MP+ + SWTTMI+ YSQN + +AL+ F K +K ++VT+
Sbjct: 87 SRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTI 146
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLG--RSLLVFFKLRE-------------------- 273
A+V SACA LGAL++G I+ Y R G ++L V L E
Sbjct: 147 ASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGK 206
Query: 274 -KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL WNS+ LA+HG ++EAL ++D+M E + P+
Sbjct: 207 RRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPD 244
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
NT+++ YAR ++ +FN++ ++ SW +M+ + + + EAL +++ G
Sbjct: 182 NTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGI 241
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY 257
D VT ++ AC H G + +G Q++
Sbjct: 242 EPDDVTFVGLILACTHGGL--VAKGWQLF 268
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 156/364 (42%), Gaps = 59/364 (16%)
Query: 1 MFVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCF 60
M + V II + + S +R II+ K + K ++ ++ +KT + D F
Sbjct: 1 MIISPVPTIIANLPNPHSSSHDSNLRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDPF 60
Query: 61 LAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLR 115
+A + + +C + ++ID+ I +F Q PNV++Y F S AI + M+R
Sbjct: 61 VAFELLRVYC--KVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVR 118
Query: 116 AEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
VL VHG V K+G + +V+ Y +
Sbjct: 119 KHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLED 178
Query: 155 SRRVSRRLFDEMPERKFATWNTMID-----AYARLAELLFNKMPAWDIRSWTTMITSYSQ 209
+R+ +FD MPER MI A +FN+M D WT +I +
Sbjct: 179 ARK----MFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVR 234
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG------- 262
N +F L+ F + + G ++VT VLSACA LGAL+LGR I Y R G
Sbjct: 235 NGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFV 294
Query: 263 ---------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ +F +R K++ +NS+ LA+HG + EA+ +F M E V
Sbjct: 295 AGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERV 354
Query: 308 RPNG 311
RPNG
Sbjct: 355 RPNG 358
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+I+ Y+R ++ LF+ + D+ ++ +MI + + + EA++ F++ K
Sbjct: 296 GALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVR 355
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
+ +T VL+AC+H G +DLG I
Sbjct: 356 PNGITFVGVLNACSHGGLVDLGGEI 380
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 154/349 (44%), Gaps = 64/349 (18%)
Query: 21 SVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF---ID 77
SV I H + L C+++KE++ ++A +V + QF++ T H +D
Sbjct: 3 SVKRIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVA--TIALHNTTNLD 60
Query: 78 YTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYML------------------- 114
Y + P +F + A+S P ++ FY +L
Sbjct: 61 YANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVR 120
Query: 115 -----RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
+A V VHG V K+GF VQT +V Y+ V FD E
Sbjct: 121 TCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNV----FDGAVEP 176
Query: 170 KFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
T M++A A+ ++ +F++MP D +W MI Y+Q + REALD F+ +
Sbjct: 177 DLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQ 236
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLG 262
G ++V+M VLSAC HL LD GR + Y C ++
Sbjct: 237 MEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
R++ VF+ ++E+N+ W+S LA++GF E+L +F+ M E V+PNG
Sbjct: 297 RAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNG 345
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ + +F M ++ +W++ I + N E+LD FN K+ G
Sbjct: 284 ALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQP 343
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ +T +VL C+ +G ++ GR
Sbjct: 344 NGITFISVLKGCSVVGLVEEGR 365
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 152/341 (44%), Gaps = 67/341 (19%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
+L+ C++ ++L + V+ + ++A Q + C + VF + PN+
Sbjct: 16 RLRACATFRDLLRAHGLAVRLCLSQSSYVATQIVHVCNGHGRAA-HAARVFAHVPAPNLH 74
Query: 93 VYHA----FSSLRHPLQAIAFYLYMLR------------------------------AEV 118
+++A ++ A+ Y+ MLR A
Sbjct: 75 LHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQ 134
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L VH V ++G S VQ ++++ Y+ ++R++FD M E+ +WNT+I
Sbjct: 135 LGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDL----SLARKVFDGMREKDAVSWNTLI 190
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
A+AR+ ++ LF+ MP + SWT +++ Y+ F A++ F + + G D V
Sbjct: 191 SAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDV 250
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKL 271
++ VL ACA LGAL+LGR I YC G +L +F +
Sbjct: 251 SIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGM 310
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPNG 311
EK+++ W++ LA HG A EA+ +F+ M E V PNG
Sbjct: 311 SEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNG 351
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-T 228
N +++ YA+ + LF+ M D+ SW+T I + + + REA+ F + G
Sbjct: 288 NALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRV 347
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+ +T +LSAC+H G LD G
Sbjct: 348 MPNGITFVGLLSACSHAGLLDEG 370
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 47/311 (15%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
+I K ++E E V+ K + F+A I S+ ++ VF +M E
Sbjct: 115 MIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDM-YSKKGCVEDAYKVFGEMHE 173
Query: 89 PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
NV V+ A + Y+L +V+ +++ V + + ++ Y
Sbjct: 174 RNVVVWTAIING-----------YILCGDVVSGR---RLFDLAPERDVVMWSVLISGYIE 219
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTM 203
S +R LFD+MP R +WN M++ YA + E +F++MP ++ SW +
Sbjct: 220 SKNM----AAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGL 275
Query: 204 ITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG 262
I Y +N F E L++F + G + T+ VLSAC+ LGALD+G+ + +Y S+G
Sbjct: 276 IGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIG 335
Query: 263 ----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+++VF L K+++ WN+I LAIHG A +ALGMFD
Sbjct: 336 YKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFD 395
Query: 301 RMTYENVRPNG 311
RM E P+G
Sbjct: 396 RMKSEGEEPDG 406
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ A ++FN + DI SW T+I + + +AL F++ K G
Sbjct: 344 NVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEE 403
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT +LSAC H+G + G
Sbjct: 404 PDGVTFVGILSACTHMGLVKDG 425
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 39/201 (19%)
Query: 111 LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L+ ++A+++ HG + N F +P F+ T F+ +R+LFD++P+
Sbjct: 28 LHQIQAQIV---THG-LEHNDFVAPNFITTC---------SRFKRIHHARKLFDKIPQPN 74
Query: 171 FATWNTMIDAYA-----RLAELLFNK------MPAWDIRSWTTMITSYSQNKQFREALDA 219
ATWN M Y R +LF + MP + ++ +I S + + RE +
Sbjct: 75 TATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMP--NCFTFPMIIKSCGKLEGVREGEEV 132
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCW 279
K G S+ +++ + G ++ + VF ++ E+N++ W
Sbjct: 133 HCCATKHGFKSNSFVATSLIDMYSKKGCVE-------------DAYKVFGEMHERNVVVW 179
Query: 280 NSITEALAIHGFAHEALGMFD 300
+I + G +FD
Sbjct: 180 TAIINGYILCGDVVSGRRLFD 200
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 151/359 (42%), Gaps = 82/359 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH--FIDYTILVFPQMQEPNVF 92
++ S+ E++ +A ++KT D F A + ++F + + Y + +++ PN F
Sbjct: 17 ERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGF 76
Query: 93 ----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
V A+++ P A+ + ML V +HG
Sbjct: 77 THNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 136
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SR 160
K+ + VFV+ +++ Y S F +R+V +R
Sbjct: 137 MKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEAR 196
Query: 161 RLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
LFDEM ER +WN MI YA + A +F+ MP D+ SW M+T+Y+ + E
Sbjct: 197 ALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNE 256
Query: 216 ALDAFNKT-KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
L+ FN S D T+ VLSACA LG+L G + +Y
Sbjct: 257 VLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALV 316
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C + ++L VF ++++ WNSI L++HG +AL +F M YE +PNG
Sbjct: 317 DMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNG 375
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + K+G FV TA+VD YS K ++ V R D
Sbjct: 296 VHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFR------------------DTSK 337
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R D+ +W ++IT S + ++AL+ F++ G + +T VLSAC
Sbjct: 338 R------------DVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSAC 385
Query: 243 AHLGALDLGR 252
H+G LD R
Sbjct: 386 NHVGLLDQAR 395
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 159/356 (44%), Gaps = 87/356 (24%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVFVYH--- 95
++ L+ ++A I+ + + ISFC + Y +F Q+ +PN F+Y+
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 96 -AFSSLRHPLQAIAFYLYM---------------LRA--------EVLLTTVHGQVWKNG 131
+S+ P+ A+ + M L+A E +L VHG K G
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVL--VHGLAIKLG 118
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRV------------------------------SRR 161
S VFVQ A++ Y +R++ ++
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQA 178
Query: 162 LFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
+FD E+ +W +MI AYA+ +A +F++MP ++ SW +MI+ Y + Q+REA
Sbjct: 179 IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 238
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR-------------GIQIY------ 257
LD FNK + S D+ T+ ++L+AC+ LG L +G+ G+ +Y
Sbjct: 239 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 298
Query: 258 ---CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + +L +F ++ KNL+ WN I ALA+HG EA+ +F+ M + P+
Sbjct: 299 YAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 354
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+N++ID YA+ + +F +MP ++ SW +I + + + EA+ F + + GT
Sbjct: 292 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 351
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
D++T+ +LSAC+H G +D+G
Sbjct: 352 LPDEITLTGLLSACSHSGLVDMG 374
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 121/274 (44%), Gaps = 85/274 (31%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYS------YSNKFFESRRV----------------- 158
+HGQ K GFS FV TA++D YS ++ K FE V
Sbjct: 75 ALHGQAMKTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCG 134
Query: 159 ----SRRLFDEMPERKFATWNTMIDAYARL------------------------------ 184
+ +LFD MP + A++N MI YA++
Sbjct: 135 QMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTN 194
Query: 185 ------AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A LF+ MP ++ +W TMI+ Y + + EA+D F++ K +D +T+ V
Sbjct: 195 VGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLV 254
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
LSACAHLG L G + +Y C ++ RSL VF+K + K++
Sbjct: 255 LSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDI 314
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
CWN+I LA+HG+ H A+ + D+M VRP+
Sbjct: 315 YCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPD 348
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ + +F K DI W +I+ + + A+ +K + +G
Sbjct: 288 SLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRP 347
Query: 231 DQVTMATVLSACAH 244
D++T +LSAC+H
Sbjct: 348 DEITFIGLLSACSH 361
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 58/329 (17%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+CS+++EL+ ++A+++KT D A + ++FC + ++Y LVF ++ N FV++
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWN 93
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEVLLTT-----------------------VHGQVW 128
FS P AI+ ++ ML + + +HG V
Sbjct: 94 TIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVI 153
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL---- 184
K G F++ M+ Y E+ R+ F M WN+MI +A+
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRI----FLGMIGFDVVAWNSMIMGFAKCGLID 209
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A+ LF++MP + SW +MI+ + +N +F++ALD F + ++ D TM ++L+ACA
Sbjct: 210 QAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACA 269
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+LGA + GR I Y C + L VF +K L CWNS
Sbjct: 270 YLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNS 329
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA +GF A+ +F + + P+
Sbjct: 330 MILGLANNGFEERAMDLFSELERSGLEPD 358
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 32/127 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + +N F V TA++D Y E V F+ P+++ + WN+MI A
Sbjct: 280 IHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNV----FECAPKKQLSCWNSMILGLA 335
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE-ALDAFNKTKKSGTGSDQVTMATVLSA 241
N F E A+D F++ ++SG D V+ VL+A
Sbjct: 336 ---------------------------NNGFEERAMDLFSELERSGLEPDSVSFIGVLTA 368
Query: 242 CAHLGAL 248
CAH G +
Sbjct: 369 CAHSGEV 375
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 31/208 (14%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+N V++ ++D Y + +++ +FD M ER +WN ++ +A++ L
Sbjct: 245 ENNLEIDVYLGNTLIDMYGRRSL----AELAQGVFDRMRERNIVSWNALVMGHAKVGNLT 300
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF+ MP D+ SWT+MIT YSQ QF +A+ F + + D+VT+A+VLSACA
Sbjct: 301 AARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACA 360
Query: 244 HLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLREKNLLCWNS 281
HLG LD+G + Y R G ++L VF ++++K+ + W S
Sbjct: 361 HLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTS 420
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRP 309
+ LA++GFA+ AL +F +M E V+P
Sbjct: 421 VISGLAVNGFANSALDLFSQMLREGVQP 448
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 83/312 (26%)
Query: 46 VYATIVKTNANLDCFLAKQFI---SFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFS 98
++A +++T + D FL I S ++ H LVF Q++ P + V++ S
Sbjct: 36 LHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLH---KAHLVFNQIECPTLVVWNHMIRGLS 92
Query: 99 SLRHPLQAIAFY---------------LYMLRAEVLLTTV------HGQVWKNGFSSPVF 137
HP++AI Y +++ +A ++ + H K GF S +F
Sbjct: 93 QSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLF 152
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
V A++ Y+ + ++++FD M +R D+
Sbjct: 153 VSNALIHMYAMCGQL----GFAQKMFDGMLDR--------------------------DL 182
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
SW T+I YSQ +++E L F+ + +D VTM ++ AC+HLG + + Y
Sbjct: 183 VSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKY 242
Query: 258 CRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEA 295
+ LG +L+ VF ++RE+N++ WN++ A G A
Sbjct: 243 IKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAA 302
Query: 296 LGMFDRMTYENV 307
+FD M +V
Sbjct: 303 RKLFDNMPKRDV 314
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A L+FN++ + W MI SQ+ EA+ + + G + +T+ + ACA
Sbjct: 69 AHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACAR 128
Query: 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
+ + GR I ++ C LG + +F + +++L+ WN++
Sbjct: 129 VSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTL 188
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + E L +FD MT N++ +
Sbjct: 189 ICGYSQYNKYKEVLRLFDAMTAANIKAD 216
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 66/262 (25%)
Query: 37 CSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
CS + + E + I + N +D +L I R + VF +M+E N+
Sbjct: 227 CSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDM-YGRRSLAELAQGVFDRMRERNIVS 285
Query: 94 YHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
++A L M A+V T +++ N V T+M+ YS +++F
Sbjct: 286 WNA--------------LVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFS 331
Query: 154 ESRRVSRRLFDEMPERKF---------------------ATW------------------ 174
++ + LF EM K W
Sbjct: 332 DAVK----LFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVG 387
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + + +F++M D SWT++I+ + N ALD F++ + G
Sbjct: 388 NSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQ 447
Query: 230 SDQVTMATVLSACAHLGALDLG 251
T +L ACAH G ++ G
Sbjct: 448 PTHGTFVGILLACAHAGLVNKG 469
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 149/326 (45%), Gaps = 57/326 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+ K SI L ++A + + N + L+ + +S H +++++ +F Q Q PNVF
Sbjct: 41 IDKSKSINNLHQIHAFLYRHNLHHHPILSFKLQRSYSSLGH-LNHSLTLFNQTQNPNVFF 99
Query: 94 Y------HAFSSLRHPLQAIAFYLYMLRAEV-----------------LLTTVHGQVWKN 130
Y H F L + QA+ FY ML +V +H Q K
Sbjct: 100 YTSIIHAHTFHKLHY--QALLFYAQMLTQKVTPNAFTFSSILKSCPLEFAQIIHAQAIKF 157
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----A 185
G S ++V+T +VD Y+ F +R LFDE+PE+ + MI +A+ A
Sbjct: 158 GLDSDLYVRTCLVDVYARGGDFVSARN----LFDEIPEKSLVSSTAMITCFAKHGMVKEA 213
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+LF+ + D+ W MI Y Q+ E L F + K +VT+ VLSAC +
Sbjct: 214 RVLFDGLEDRDLVCWNVMIDGYVQHGLANEGLVLFRQMLKDRVRPSEVTVLAVLSACGQI 273
Query: 246 GALDLGR---------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSIT 283
GAL+ GR GI+I C +L + LVF +++ K+++ WNS+
Sbjct: 274 GALESGRWVHSYIQNNGIEINAHVGSALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMV 333
Query: 284 EALAIHGFAHEALGMFDRMTYENVRP 309
A HGF+ +AL +F+ M +P
Sbjct: 334 TGYATHGFSQDALQLFNEMCGLGYQP 359
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y++ A L+F ++ D+ W +M+T Y+ + ++AL FN+ G
Sbjct: 299 SALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQ 358
Query: 230 SDQVTMATVLSACAHLG 246
+T VLSAC H G
Sbjct: 359 PTDITFIGVLSACGHAG 375
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 59/332 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+ C S+ E + + A + + + A + +SF S + ID++ +F Q+ P +
Sbjct: 19 LENCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTIS 78
Query: 93 ----VYHAFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQV 127
+ FS ++P +++ ++ MLR V L VH ++
Sbjct: 79 NWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRI 138
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G F+ +++ Y +R+V FDEM R +WN M+D YA+ +L
Sbjct: 139 AKEGLWFDRFIANSLIHMYGSCGDIGSARKV----FDEMLIRNSVSWNAMLDGYAKCGDL 194
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+F MP D+ SW++MI + ++ AL F + + G +++VTM +VL AC
Sbjct: 195 DSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCAC 254
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVF--FKLREKNLLC 278
AHLGAL+ GR + Y C ++ ++ VF + + ++L
Sbjct: 255 AHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLM 314
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN+I LA HG HE+L +F M + P+
Sbjct: 315 WNTIIGGLATHGLVHESLELFKEMQVLGIVPD 346
>gi|357514477|ref|XP_003627527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521549|gb|AET02003.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 138/272 (50%), Gaps = 43/272 (15%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVL 119
FL + I C+S+ ++ PN + ++ + L +++ L
Sbjct: 48 FLYNKLIQACSSKHQCFTLYSQMYLHGHSPNQYTFNFLFTTCTSLSSLS----------L 97
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H Q K+GF VF TA++D Y+ + +R +FDEM ++ ATWN M+
Sbjct: 98 GQMIHTQFMKSGFKHDVFASTALLDMYAK----LGCLKFARNVFDEMSVKELATWNAMMA 153
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQV 233
R ++ LF MP+ ++ SWTTM++ Y QNKQ+ +AL F + ++ S ++V
Sbjct: 154 GCTRFGDMERALELFWLMPSRNVVSWTTMVSGYLQNKQYEKALGLFMRMEREKDVSPNEV 213
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG--RSLLVFFKLRE------------------ 273
T+A+VL ACA+LGAL++G+ +++Y R G ++L V + E
Sbjct: 214 TLASVLPACANLGALEIGQRVEVYARKNGFFKNLFVCNAVLEMYAKCGKIDVAWKVFDEI 273
Query: 274 ---KNLLCWNSITEALAIHGFAHEALGMFDRM 302
+NL WNS+ LA+HG H+A+ ++D+M
Sbjct: 274 GRFRNLCSWNSMIMGLAVHGQCHKAIQLYDQM 305
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 31/193 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAYARLAE- 186
KNGF +FV A+++ Y+ K V+ ++FDE+ R +WN+MI A +
Sbjct: 240 KNGFFKNLFVCNAVLEMYAKCGKI----DVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQC 295
Query: 187 -----------------LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
LLF IR ++ ++ + N + GT
Sbjct: 296 HKAIQLYDQMLVSYSLYLLFISFAFIMIRGGHGLVNHINRTEPNLSVEMVRNNRTREGTL 355
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D VT +L AC H G ++ G+ + +S+ R + KL + + + L
Sbjct: 356 PDDVTFVGLLLACTHGGMVEKGKHV---FQSMTRDFNIIPKLEH-----YGCMVDLLGRA 407
Query: 290 GFAHEALGMFDRM 302
G EA + RM
Sbjct: 408 GRLTEAYEVIKRM 420
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 160/362 (44%), Gaps = 86/362 (23%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFV 93
++C S+++++ V+A +V D ++ + + + I + LVF Q+ P++F+
Sbjct: 16 RRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFM 75
Query: 94 YHAF----SSLRHPLQAIAFYLYMLR-------------------------AEVLLTTVH 124
Y+ + P A++ Y M R A VH
Sbjct: 76 YNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVH 135
Query: 125 GQVWKNGFSSPVFVQTAMVDNYS------YSNKFFESRR--------------------- 157
V K G S FV+ A++ ++ ++ F+ R
Sbjct: 136 AHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIV 195
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+R+LFDE P + +WN MI AYA+ E+ LFN++P D+ SW MI+ + +
Sbjct: 196 AARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGS 255
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG------------------- 253
A++ F + ++ G D VTM ++LSACA G +D+GR
Sbjct: 256 HVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILG 315
Query: 254 ---IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
I +Y C S+ +L VF+ +R+K++ WNSI LA+HG E++ +F +M E VR
Sbjct: 316 NALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVR 375
Query: 309 PN 310
P+
Sbjct: 376 PD 377
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 158 VSRRLFDEMPERKFATW------NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
V RRL + E T N +ID YA+ + +F M D+ +W ++I
Sbjct: 293 VGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGG 352
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL 266
+ + E++D F K K D++T VL AC+H G +D GR + + +L+
Sbjct: 353 LALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGR--EYF------NLM 404
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
E N+ + + + L G EA D M E PN
Sbjct: 405 QHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVE---PN 445
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 115/217 (52%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K+GF VF TA+VD Y+ ++R+ FDEM R TWN+MI YA
Sbjct: 104 LHTHFVKSGFGCDVFALTALVDMYAKLGLL----SLARKQFDEMTVRDVPTWNSMIAGYA 159
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
R +L LF MPA ++ SWT MI+ Y+QN Q+ +AL F +++ ++VT+A
Sbjct: 160 RCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLA 219
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG--RSLLVFFKLRE--------------------- 273
+VL ACA+LGAL++G I++Y R G ++L V L E
Sbjct: 220 SVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGR 279
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL WNS+ LA+HG EA+ +F +M E P+
Sbjct: 280 RNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPD 316
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-D 196
++ Y+ N +F++ VS N +++ YAR + +F ++ +
Sbjct: 237 IEVYARGNGYFKNLYVS---------------NALLEMYARCGRIDKAWGVFEEIDGRRN 281
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW +MI + + + EA++ F K + G D VT VL AC H G + G Q
Sbjct: 282 LCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEG---QH 338
Query: 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
+ S+ R + KL + + + L G EA + RM E
Sbjct: 339 FFESMERDFSIAPKLEH-----YGCMVDLLGRAGELREAHDLILRMPME 382
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 115/217 (52%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K+GF VF TA+VD Y+ ++R+ FDEM R TWN+MI YA
Sbjct: 104 LHTHFVKSGFGCDVFALTALVDMYAKLGLL----SLARKQFDEMTVRDVPTWNSMIAGYA 159
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
R +L LF MPA ++ SWT MI+ Y+QN Q+ +AL F +++ ++VT+A
Sbjct: 160 RCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLA 219
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG--RSLLVFFKLRE--------------------- 273
+VL ACA+LGAL++G I++Y R G ++L V L E
Sbjct: 220 SVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGR 279
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL WNS+ LA+HG EA+ +F +M E P+
Sbjct: 280 RNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPD 316
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-D 196
++ Y+ N +F++ VS N +++ YAR + +F ++ +
Sbjct: 237 IEVYARGNGYFKNLYVS---------------NALLEMYARCGRIDKAWGVFEEIDGRRN 281
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ SW +MI + + + EA++ F K + G D VT VL AC H G + G+
Sbjct: 282 LCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQ 337
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 130/284 (45%), Gaps = 56/284 (19%)
Query: 76 IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT------- 122
+DY++ +F + Q P+VF + HA L QA+ FY ML V
Sbjct: 25 LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHE--QALNFYAQMLTQGVEPNAFTFSSIL 82
Query: 123 ----------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
+H Q K GF S ++V+T ++D Y+ +++ LFD MPE+
Sbjct: 83 KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQ----LFDTMPEKSLV 138
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+ M+ YA+ EL LF+ M D W MI Y+QN EAL F + K+
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265
++VT+ +VLSAC LGAL+ GR + Y C SL +
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 258
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
LVF K+ +K+++ WNS+ A+ GF+ EAL +F M + P
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHP 302
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 60/229 (26%)
Query: 48 ATIVKTNANLDCFLAKQFISF-----CTSRFHFIDYTILVFPQMQEPNVFVYH----AFS 98
+V D K +S C ++ +D ++F M+E + ++ ++
Sbjct: 120 GDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYT 179
Query: 99 SLRHPLQAIAFYLYMLRA-----EVLLTTV----------------HGQVWKNGFSSPVF 137
P +A+ + ML+A EV + +V H + NG V
Sbjct: 180 QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVH 239
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
V TA+VD YS ++R L+F+K+ D+
Sbjct: 240 VGTALVDMYSKCGSLEDAR------------------------------LVFDKIDDKDV 269
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+W +MI Y+ +EAL F + G +T +LSAC H G
Sbjct: 270 VAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 318
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 126/264 (47%), Gaps = 53/264 (20%)
Query: 96 AFSSLRHPLQAIAFYLYMLRAEVLLTTVH---------------------GQVWKNGFSS 134
AF+ P A+ +L M R V+ +V + + G
Sbjct: 201 AFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKV 260
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLF 189
+ + AM+D Y+ ++++ LFDEMPER +W M+D YA++ A L+F
Sbjct: 261 DLTLCNAMLDMYTKCGSVDDAQK----LFDEMPERDVFSWTIMLDGYAKMGDYDAARLVF 316
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGAL 248
N MP +I +W +I++Y QN + +EAL FN+ + S D+VT+ + LSACA LGA+
Sbjct: 317 NAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAI 376
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
DLG I +Y C SL ++L VF+ + E+++ W+++ L
Sbjct: 377 DLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGL 436
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
+HG A+ +F M V+PN
Sbjct: 437 GMHGRGKAAIDLFFEMQEAKVKPN 460
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 66/309 (21%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLA-KQFISFCTSRFHFIDYTILVFP 84
R H I + + KCSS K+L+ V+A +++T D F A K F + S F +DY +F
Sbjct: 24 RNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFD 83
Query: 85 QMQEPNVFVYH----AFSSLRHPLQAIAFYLYM----------------------LRAEV 118
Q+ +PN++ ++ A++S P Q+ +L + L+A
Sbjct: 84 QIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASR 143
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
+ T VHG K F +++ ++V Y ++ RLF + + +WN+MI
Sbjct: 144 VGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDL----SMAERLFKGISCKDVVSWNSMI 199
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A+A Q +AL+ F K ++ + VTM V
Sbjct: 200 SAFA--------------------------QGNCPEDALELFLKMERENVMPNSVTMVGV 233
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
LSACA L+ GR + Y G + +L N++ + G +A +
Sbjct: 234 LSACAKKLDLEFGRWVCSYIERKGIKV---------DLTLCNAMLDMYTKCGSVDDAQKL 284
Query: 299 FDRMTYENV 307
FD M +V
Sbjct: 285 FDEMPERDV 293
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 7/192 (3%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L VH ++ + G F + + + S+ F + +R LFD++P+ TWNT+I
Sbjct: 41 LKEVHARMLRTGLFFDPFSASKLFTASALSS--FSTLDYARNLFDQIPQPNLYTWNTLIR 98
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNK-QFREALDAFNKTKKSGTGSDQVTMATV 238
AYA ++ + + D+ + NK F + A ++ K S G+ MA
Sbjct: 99 AYASSSDPFQSFVIFLDLLDKCEDLP----NKFTFPFVIKAASELKASRVGTAVHGMAIK 154
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
LS L L+ C L + +F + K+++ WNS+ A A +AL +
Sbjct: 155 LSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALEL 214
Query: 299 FDRMTYENVRPN 310
F +M ENV PN
Sbjct: 215 FLKMERENVMPN 226
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++++D YA+ L +F + D+ W+ MI + + + A+D F + +++
Sbjct: 399 SSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVK 458
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE------KNLLCWNSIT 283
+ VT VL AC+H G +D GR VFF E + + +
Sbjct: 459 PNSVTFTNVLCACSHAGLVDEGR--------------VFFHEMEPVYGVVPEMKHYACMV 504
Query: 284 EALAIHGFAHEALGMFDRMT 303
+ L GF EA+ + + M+
Sbjct: 505 DILGRAGFLEEAMELINEMS 524
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 158/351 (45%), Gaps = 70/351 (19%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
I++ C + ++L+ ++A +KT D A + I FC IDY VF QM E
Sbjct: 21 ILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPE 80
Query: 89 PNVFVYH------AFSSLRHPLQAIAFYLY--ML--------------------RAEVLL 120
PN F ++ A ++ H LQ+ A L+ ML RA L
Sbjct: 81 PNCFCWNTILRILAETNDEH-LQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLR 139
Query: 121 T--TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-SRRLFD-------EMPERK 170
+HG + K GF FV + +V Y ++ + + + D E+ +RK
Sbjct: 140 EGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRK 199
Query: 171 ----FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
WN MID RL ++ LF++MP + SW MI+ Y+QN F EA++ F
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQ 259
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CR 259
+ + S + VT+ +VL A A +GAL+LG+ I +Y C
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCG 319
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ ++L VF L ++N + W++I A A+HG A +A+ F M V PN
Sbjct: 320 SIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPN 370
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y++ + +F +P + +W+ +I +++ + + +A+ F+ K+G
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ V +LSAC+H G ++ GR
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGR 391
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 40/235 (17%)
Query: 111 LYMLRAEV------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
L+ML+A +L +H + K GF++ VFV T+++ +Y S +++R +FD
Sbjct: 60 LFMLKACASSNNLSILHHLHAHITKLGFTTHVFVATSLLHSY-----VLHSFQLARLVFD 114
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
EMP + TWNTMI Y++ ++ LF++MP+ D+ SW+ MI +Y N+ +R AL
Sbjct: 115 EMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALLL 174
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------- 257
F +G DQ+ ++L+ CAH+G+L L G ++
Sbjct: 175 FQDMIINGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLVDMY 234
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + +F + E+N+ W ++ LA HG EAL +F+ M +E V PN
Sbjct: 235 AKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPN 289
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 28/142 (19%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ L +FN M ++R+WT +I + + +EAL F + G
Sbjct: 229 VLVDMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEP 288
Query: 231 DQVTMATVLSACAHLGALDLGR---------GIQI-------YCRSLGRSLL------VF 268
++ T VLSAC H G + GR G++I + LGRS L V
Sbjct: 289 NEFTFTGVLSACVHAGLVQEGRKYFNMIEECGLEIRIQHYGCFVDLLGRSGLLEEAYGVI 348
Query: 269 FKLR-EKNLLCWNSITEALAIH 289
+R E N++ W+S+ A H
Sbjct: 349 KSMRLEPNVIVWSSLLSACKQH 370
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 58/330 (17%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVF- 92
K C+++K+L+ ++A ++KT ++FC TS I+Y LVF Q+ PN+F
Sbjct: 32 KHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFS 91
Query: 93 ---VYHAFSSLRHPLQAIAFYLYML------------------RAEVLLT----TVHGQV 127
+ FS P AI+ ++ ML A++ L +HG+V
Sbjct: 92 WNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRV 151
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G F++ ++ Y Y+N F S + F E + WN+MI A+ E+
Sbjct: 152 IKLGLQFDPFIRNTII--YMYANCGFLSEM--WKAFYERMDFDIVAWNSMIMGLAKCGEV 207
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF++MP + SW +MI+ Y +N + REALD F + ++ + TM ++L+A
Sbjct: 208 DESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNAS 267
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LGAL G I Y C S+G + VF K L WN
Sbjct: 268 ARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWN 327
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ LA++G +EA+ +F R+ N+RP+
Sbjct: 328 TMILGLAMNGCENEAIQLFSRLECSNLRPD 357
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y + + +F P + SW TMI + N EA+ F++ + S
Sbjct: 297 SIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRP 356
Query: 231 DQVTMATVLSACAHLGALD 249
D VT VL+AC + G +D
Sbjct: 357 DDVTFVGVLTACNYSGLVD 375
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 154/336 (45%), Gaps = 65/336 (19%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVFVYH--- 95
+++L+ ++A ++KT D A + + F H +DY +F M PN F Y+
Sbjct: 1 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 60
Query: 96 -AFSSLRHPLQAIAFYLYML--------------------RAEVLLT--TVHGQVWKNGF 132
A S P A+ ++ M+ RAE L VHG K G
Sbjct: 61 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 120
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRV-SRRLF----DEMPERK------FATWNTMIDAY 181
S FV + +V Y ++ R+ RR+F D + ++K WN MID Y
Sbjct: 121 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGY 180
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
R+ EL LF++MP + SW MI Y+Q+ F+EA++ F + + + + VT+
Sbjct: 181 VRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLV 240
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
+VL A + LGAL+LG+ + +Y C S+ ++L VF L ++
Sbjct: 241 SVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR 300
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ W++I LA+HG A + L F+ M V P+
Sbjct: 301 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 336
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID YA+ + +F +P ++ +W+T+I + + + ++ LD F +++G
Sbjct: 275 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM 334
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
VT +LSAC+H G ++ GR
Sbjct: 335 PSDVTYIGLLSACSHAGLVNEGR 357
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 161/356 (45%), Gaps = 68/356 (19%)
Query: 13 FKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-S 71
F+ S P ++ H L C S + L+ +++ I+KT + F + I FC S
Sbjct: 19 FQPTSDPP-YKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAIS 77
Query: 72 RFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEV--------- 118
F + Y +L+F +++PN F+++ S P+ AI FY+ ML V
Sbjct: 78 PFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPF 137
Query: 119 LLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
LL + +HG V K G S FV T++++ Y+ + + + V F +
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV----FSKS 193
Query: 167 PERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
R ++ +I Y A LF ++P D SW MI Y+Q+ +F EAL F
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CR 259
+ K++ ++ TM TVLSACA G+L+LG ++ + C
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L ++ +F + EK+++ WN + I G++H EAL +F +M NV PN
Sbjct: 314 DLDKARDLFEGICEKDIISWN-----VMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +L LF + DI SW MI YS ++EAL F K ++S
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLL 266
+ VT ++L ACA+LGALDLG+ I Y C ++ +
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ K+L WN++ LA+HG A+ AL +F +M E P+
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPD 466
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 174 WNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W ++ID YA+ A+ +F M + SW MI+ + + AL+ F + + G
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
D +T VLSAC+H G ++LGR
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGR 487
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 157/385 (40%), Gaps = 111/385 (28%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+K + ++ ++A ++ TN D F A + + S+ ++Y LVF Q+ +PN F+
Sbjct: 18 LQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFI 77
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVW 128
+ ++ P +A+ FY M R +L V G+
Sbjct: 78 CNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAV 137
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SRR 161
K GF VFV ++ Y + +R V ++
Sbjct: 138 KRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQN 197
Query: 162 LFDEMPE--------------------------------RKFATWNTMIDAYARLAEL-- 187
+FDEMPE R +WN+MID YA++ E+
Sbjct: 198 MFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEV 257
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+F+KM ++ SW+ MI Y+Q++ +EAL+ F + G D+V++ +SAC+
Sbjct: 258 AREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQ 317
Query: 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
LGALD GR I +Y C S + +F + E+N++ WN +
Sbjct: 318 LGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVM 377
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
L ++GF EAL F +M E +
Sbjct: 378 IVGLGMNGFGKEALECFTQMEMERI 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 56/154 (36%), Gaps = 44/154 (28%)
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V A S L Q +LYM R +LL V VQTA+VD Y
Sbjct: 309 VGAVSACSQLGALDQGRWIHLYMKRNRMLLDIV--------------VQTALVDMYLKCG 354
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210
SR +RR+F+ MPER +WN MI N
Sbjct: 355 ----SRDEARRIFNSMPERNVVSWN--------------------------VMIVGLGMN 384
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+EAL+ F + + D + VL AC+H
Sbjct: 385 GFGKEALECFTQMEMERIPMDDLLFLGVLMACSH 418
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 31/209 (14%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+N V++ ++D Y ++R +FD+M R +WN MI Y + L
Sbjct: 206 ENNVEIDVYLGNTLIDMYGRRGLV----HLARGVFDQMQWRNLVSWNAMIMGYGKAGNLV 261
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF+ M D+ SWT MITSYSQ QF EAL F + +S D++T+A+VLSACA
Sbjct: 262 AARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACA 321
Query: 244 HLGALDLGRG--------------------IQIYCRS--LGRSLLVFFKLREKNLLCWNS 281
H G+LD+G I +YC+ + ++L VF ++R+K+ + W S
Sbjct: 322 HTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTS 381
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
I LA++GFA AL F RM E V+P+
Sbjct: 382 IISGLAVNGFADSALDYFSRMLREVVQPS 410
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 39/187 (20%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+T+H +V K GF S ++V A+++ Y +++++FDEMPER +WN
Sbjct: 97 STIHARVLKLGFESHLYVSNALINMYGSCGHL----GLAQKVFDEMPERDLVSWN----- 147
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+++ Y Q K+FRE L F + +G D VTM V+
Sbjct: 148 ---------------------SLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVL 186
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
AC LG + + Y + V+ N++ + G H A G+FD
Sbjct: 187 ACTSLGEWGVADAMVDYIEENNVEIDVYLG---------NTLIDMYGRRGLVHLARGVFD 237
Query: 301 RMTYENV 307
+M + N+
Sbjct: 238 QMQWRNL 244
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGAL 248
W MI +S + Q EA+ +N + G + +T + ACA H L
Sbjct: 45 WNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVL 104
Query: 249 DLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
LG +Y C LG + VF ++ E++L+ WNS+ E LG
Sbjct: 105 KLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLG 164
Query: 298 MFDRMTYENVRPN 310
+F+ M V+ +
Sbjct: 165 VFEAMRVAGVKGD 177
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 93/266 (34%), Gaps = 74/266 (27%)
Query: 37 CSSIKELECVYAT---IVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
C+S+ E A I + N +D +L I R + VF QMQ N+
Sbjct: 188 CTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDM-YGRRGLVHLARGVFDQMQWRNLVS 246
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149
++A + + + A + M + +V+ W N M+ +YS +
Sbjct: 247 WNAMIMGYGKAGNLVAARELFDAMSQRDVI-------SWTN-----------MITSYSQA 288
Query: 150 NKFFESRRVSRRLFDEMPERKFA------------------------------------- 172
+F E+ R LF EM E K
Sbjct: 289 GQFTEALR----LFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKAD 344
Query: 173 --TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
N +ID Y + + +F +M D SWT++I+ + N ALD F++ +
Sbjct: 345 IYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLR 404
Query: 226 SGTGSDQVTMATVLSACAHLGALDLG 251
+L ACAH G +D G
Sbjct: 405 EVVQPSHGAFVGILLACAHAGLVDKG 430
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 175/405 (43%), Gaps = 114/405 (28%)
Query: 19 PTSVSFIRI-HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77
PT VS R+ L KC+ ++ V+A I+K N + D ++A + IS S H ++
Sbjct: 14 PTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLIS-AFSLCHQMN 72
Query: 78 YTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTTVH 124
+ VF Q+Q+PNV +Y+ A L+A A + M + + LL +
Sbjct: 73 LAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACN 132
Query: 125 GQVW------------KNGFSSPVFVQTAMVDNYS--------YSNKFF----ESRRVS- 159
G+ W K GF +FV +++D+YS Y+ K F E VS
Sbjct: 133 GKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSW 192
Query: 160 ----------------RRLFDEMPERKFATWNTMIDAYAR-------------------- 183
R+LFDEM ER +WNT++D Y +
Sbjct: 193 NSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVV 252
Query: 184 ----------------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+A +LF+KMP ++ +WT +I+ +++ +EA +N+ + +G
Sbjct: 253 SWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG 312
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRSL 265
D T+ ++L+ACA G L LG+ + C + ++L
Sbjct: 313 LKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKAL 372
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F ++ ++L+ WN + + LA+HG +A+ +F +M E +P+
Sbjct: 373 SIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPD 417
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 30/166 (18%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +FN+M D+ SW M+ + + +A+ F+K ++ G
Sbjct: 356 NALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFK 415
Query: 230 SDQVTMATVLSACAHLGALDLGR-------------------GIQIYCRSLGRSLLVFFK 270
D+VT+ +L AC H G +D G G I G L F+
Sbjct: 416 PDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFR 475
Query: 271 L-----REKNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
L E N + W ++ A +H A + DR+ T E P
Sbjct: 476 LVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPG 521
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 87/359 (24%)
Query: 39 SIKELECVYATIVKTNANLDC-FLAKQFISFCTSRFH------FIDYTILVFPQMQEPNV 91
++K L+ ++A ++ N + FL ++ TS +Y +F Q+ +P+
Sbjct: 14 NLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDT 73
Query: 92 FVYHAF----SSLRHPLQAIAFYLYM---------------LRAEVLL------TTVHGQ 126
F+Y+ S +PL+AI+ Y M L+A L + VHG
Sbjct: 74 FMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGM 133
Query: 127 VWKNGFSSPVFVQTAMV------DNYSYSNKFFE-----------------SRR----VS 159
V + GF S V+ ++ + + + F+ +RR V+
Sbjct: 134 VLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVA 193
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFR 214
R+LF+EMPER +WN MI Y + E+ LF++ P D+ SW MI Y +
Sbjct: 194 RKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSK 253
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------------------- 253
+AL+ FN+ ++G D+VT+ ++LSACA LG L+ G+
Sbjct: 254 QALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNAL 313
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
I +Y C ++ SL VF+ + +K+++ WNS+ +A+HG E+L +F M + PN
Sbjct: 314 IDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPN 372
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 29/145 (20%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +F + D+ SW ++I + + +E+L F +++
Sbjct: 311 NALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKIC 370
Query: 230 SDQVTMATVLSACAHLGALDLG-----------------RGIQIYCRSLGRSLLVFFKLR 272
+++T VL AC+H G +D G R LGR+ L+ +
Sbjct: 371 PNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAK 430
Query: 273 -------EKNLLCWNSITEALAIHG 290
E N + W ++ A +HG
Sbjct: 431 FIDSMKIEPNAIIWRTLLAACKVHG 455
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 161/356 (45%), Gaps = 68/356 (19%)
Query: 13 FKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-S 71
F+ S P ++ H L C S + L+ +++ I+KT + F + I FC S
Sbjct: 19 FQPTSDPP-YKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAIS 77
Query: 72 RFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEV--------- 118
F + Y +L+F +++PN F+++ S P+ AI FY+ ML V
Sbjct: 78 PFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPF 137
Query: 119 LLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
LL + +HG V K G S FV T++++ Y+ + + + V F +
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV----FSKS 193
Query: 167 PERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
R ++ +I Y A LF ++P D SW MI Y+Q+ +F EAL F
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CR 259
+ K++ ++ TM TVLSACA G+L+LG ++ + C
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L ++ +F + EK+++ WN + I G++H EAL +F +M NV PN
Sbjct: 314 DLDKARDLFEGICEKDIISWN-----VMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +L LF + DI SW MI YS ++EAL F K ++S
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLL 266
+ VT ++L ACA+LGALDLG+ I Y C ++ +
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ K+L WN++ LA+HG A+ AL +F +M E P+
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPD 466
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 174 WNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W ++ID YA+ A+ +F M + SW MI+ + + AL+ F + + G
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
D +T VLSAC+H G ++LGR
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGR 487
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 157/351 (44%), Gaps = 70/351 (19%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
I++ C + ++L+ ++A +KT D A + I FC IDY VF QM E
Sbjct: 21 ILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPE 80
Query: 89 PNVFVYH------AFSSLRHPLQAIAFYLY--ML--------------------RAEVLL 120
PN F ++ A ++ H LQ+ A L+ ML RA L
Sbjct: 81 PNCFCWNTILRVLAETNDEH-LQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLR 139
Query: 121 T--TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-SRRLFD-------EMPERK 170
+HG + K GF FV + +V Y ++ + + + D E+ +RK
Sbjct: 140 EGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRK 199
Query: 171 ----FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
WN MID RL ++ LF++MP + SW MI+ Y+QN F EA++ F
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQ 259
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CR 259
+ + S + VT+ +VL A A +GAL+LG+ I +Y C
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCG 319
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ +L VF L ++N + W++I A A+HG A +A+ F M V PN
Sbjct: 320 SIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPN 370
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 37/188 (19%)
Query: 65 FISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVH 124
IS HFI+ I +F +MQ N+ + +L L AIA + A L +H
Sbjct: 241 MISGYAQNGHFIE-AINLFQEMQSSNI--DPNYVTLVSVLPAIA----RIGALELGKWIH 293
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
KN + +A+VD YS E+ +V F+ +P+R TW
Sbjct: 294 LYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQV----FETLPKRNAITW---------- 339
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+ +I +++ + + +A+ F+ K+G + V +LSAC+H
Sbjct: 340 ----------------SAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSH 383
Query: 245 LGALDLGR 252
G ++ GR
Sbjct: 384 AGLVEEGR 391
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 61/334 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L +C+++ L+ ++A V T + F + R + Y +F PNVF+
Sbjct: 17 LHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPSPNVFL 76
Query: 94 YHAFSSL---------RHPLQAIAFYLYMLR---------------------AEVLLTTV 123
Y A S H ++A +L MLR L+ ++
Sbjct: 77 YSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSI 136
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H K+GF F++T+++D YS ++R+ LFD + +R +W ++ YAR
Sbjct: 137 HCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARK----LFDGLTDRNVVSWTALVSGYAR 192
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ LF +MP D+ +W +I +QN F EA+ F + G + T++ +
Sbjct: 193 AGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCL 252
Query: 239 LSACAHLGALDLGRGIQIY----CRSLGRSLL------------------VFFKLREKNL 276
LSAC HLG L +G+ I Y C G S++ +F ++ L
Sbjct: 253 LSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGL 312
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ LA+HG + A+ +F+ M E V+P+
Sbjct: 313 TTWNSLINCLALHGCSESAIAVFNSMRNEGVQPD 346
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 38/156 (24%)
Query: 110 YLYMLRAEVLLTTVHGQVWKN--GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167
+L ML+ + +HG W++ GF S V ++D Y E++ + FD
Sbjct: 258 HLGMLK---IGKVIHGYAWRSCVGFGSSVV--NGLIDMYGKCGNLMEAKWI----FDAFS 308
Query: 168 ERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+R TWN++I+ A + S++ A+ FN + G
Sbjct: 309 DRGLTTWNSLINCLA---------------------LHGCSES-----AIAVFNSMRNEG 342
Query: 228 TGSDQVTMATVLSACAHLGALDLG-RGIQIYCRSLG 262
D+VT +L+AC H G +D G R ++ C G
Sbjct: 343 VQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHG 378
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 141/313 (45%), Gaps = 80/313 (25%)
Query: 78 YTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYM---------------LRAEV 118
Y +FP + EP+ F+++ + PL AI+ Y M L+A
Sbjct: 30 YAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 89
Query: 119 LLT------TVHGQVWKNGFSSPVFVQTAMV------DNYSYSNKFFE------------ 154
L VHG+V++ GF S FV+ ++ + + + F+
Sbjct: 90 RLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSA 149
Query: 155 -----SRR----VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
+RR V+R+LFDEMP + +WN MI YA+ E+ LF+++P D+ +W
Sbjct: 150 LTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTW 209
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI---- 256
MI Y ++AL+ F + + G D+VTM ++LSAC LG LD G+ I
Sbjct: 210 NAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISE 269
Query: 257 -------------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
C S+ R+L VF +REK++ WNS+ LA HG A +++
Sbjct: 270 MGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIH 329
Query: 298 MFDRMTYENVRPN 310
+F M +RP+
Sbjct: 330 LFTEMRKLKIRPD 342
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 28/147 (19%)
Query: 175 NTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ ++ F M D+ +W +++ + + +++ F + +K
Sbjct: 281 NALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIR 340
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSIT 283
D++T VL AC+H G ++ GR +F L E N+ + +
Sbjct: 341 PDEITFVGVLVACSHAGRVEEGR--------------QYFDLMRDEYNIEPNIRHYGCMV 386
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+ L G +EA D M E PN
Sbjct: 387 DLLGRAGLLNEAFDFIDTMKIE---PN 410
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 67/354 (18%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF 73
+++ P + F+ L +C+++ L+ ++A V T + F + R
Sbjct: 221 RRHRSPPTADFV------AALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRL 274
Query: 74 HFIDYTILVFPQMQEPNVFVYHAFSSL---------RHPLQAIAFYLYMLR--------- 115
+ Y +F PNVF+Y A S H ++A +L MLR
Sbjct: 275 SCLPYARRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQF 334
Query: 116 ------------AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
L+ ++H K+GF F++T+++D YS ++R+ LF
Sbjct: 335 VYPLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARK----LF 390
Query: 164 DEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
D + +R +W ++ YAR ++ LF +MP D+ +W +I +QN F EA+
Sbjct: 391 DGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVG 450
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----CRSLGRSLL-------- 266
F + G + T++ +LSAC HLG L +G+ I Y C G S++
Sbjct: 451 IFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYG 510
Query: 267 ----------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F ++ L WNS+ LA+HG + A+ +F+ M E V+P+
Sbjct: 511 KCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQPD 564
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 38/156 (24%)
Query: 110 YLYMLRAEVLLTTVHGQVWKN--GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167
+L ML+ + +HG W++ GF S V ++D Y E++ + FD
Sbjct: 476 HLGMLK---IGKVIHGYAWRSCVGFGSSVV--NGLIDMYGKCGNLMEAKWI----FDAFS 526
Query: 168 ERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+R TWN++I+ A + S++ A+ FN + G
Sbjct: 527 DRGLTTWNSLINCLA---------------------LHGCSES-----AIAVFNSMRNEG 560
Query: 228 TGSDQVTMATVLSACAHLGALDLG-RGIQIYCRSLG 262
D+VT +L+AC H G +D G R ++ C G
Sbjct: 561 VQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHG 596
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 67/345 (19%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILV 82
F++ H L C ++K L+ +++ ++KT + F + I FC S + + Y +L+
Sbjct: 21 FLQTHPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLL 80
Query: 83 FPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------- 122
F + +PN +++ S P+ AI +Y+ M+ + T
Sbjct: 81 FKSIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISST 140
Query: 123 -----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+HGQ+ K GF + FV T+++ Y + + +R V F+ R ++ +
Sbjct: 141 HEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLV----FERSSMRDVVSYTAL 196
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I YA L LF+++P D+ SW MI Y+Q+ +F EAL F + ++ +
Sbjct: 197 ITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNM 256
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
T+ +VLSACA G+L +G + + C L +L +F
Sbjct: 257 STLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEG 316
Query: 271 LREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
++ KN++ WN + I G+ H EALG+F +M NV PN
Sbjct: 317 IKNKNVISWN-----VMIGGYTHLSCYKEALGLFRQMLQSNVEPN 356
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
VS + + E N +ID YA+ +L LF + ++ SW MI Y+
Sbjct: 278 VSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSC 337
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
++EAL F + +S + VT+ ++L ACA+LGAL LG+ I Y
Sbjct: 338 YKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWT 397
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C ++ + +F + K+L WN++ A+HG A A+ +F RMT E + P
Sbjct: 398 SLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVP 457
Query: 310 N 310
+
Sbjct: 458 D 458
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A W ++ID YA+ +A +F+ M + SW MI+ ++ + Q A+ F++ K
Sbjct: 394 ALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKE 453
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D +T VLSAC H G LDLG
Sbjct: 454 GLVPDNITFIGVLSACNHAGLLDLGH 479
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 167/404 (41%), Gaps = 112/404 (27%)
Query: 18 FPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77
PT SF I+ LK C++ LE V+A I++ + D F+ QF++ C S +F
Sbjct: 16 LPTLRSFDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNF-S 74
Query: 78 YTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL------------- 120
YT VF + P+ +++ +S ++ ++ M R++ +
Sbjct: 75 YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACS 134
Query: 121 --------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------- 158
HG + G VFV T+++D Y + +R+V
Sbjct: 135 KVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTA 194
Query: 159 -------------SRRLFDEMPERKFATWN------------------------------ 175
+R+LFDEMPE+ +WN
Sbjct: 195 MIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSF 254
Query: 176 -TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
TMID YA+ ++ +F + P D+ +W+ +I+ Y QN Q EA+ F +
Sbjct: 255 TTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVK 314
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLL 266
D+ M +++SAC+ +G+L+L + + Y C S+ R+
Sbjct: 315 PDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATK 374
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F ++ +++L+ + S+ + L+IHG +A+ +F RM E + P+
Sbjct: 375 LFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPD 418
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 148/344 (43%), Gaps = 74/344 (21%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR-FHFIDYTILVFPQMQEPNVF--- 92
C S+ L+ +++ +KT + + + +SFC SR F + Y +F + EP+VF
Sbjct: 24 CKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWN 83
Query: 93 -VYHAFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQVWKN 130
++ +S + P ++ YL ML V L +H V K
Sbjct: 84 IMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKY 143
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------ 184
G S VF A+++ YS ++R +FD + TWN MI Y R+
Sbjct: 144 GLDSNVFAHNALINMYSLCGLI----DMARGIFDMSCKSDVVTWNAMISGYNRIKKDVIS 199
Query: 185 ----------------AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
A F+KMP D SWT MI Y + ++EAL F + + S
Sbjct: 200 WTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKI 259
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
D+ TM +VL+ACA LGAL+LG I+ Y C ++ +L
Sbjct: 260 KPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALS 319
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F L +++ W ++ LAI+G EAL MF +M +V P+
Sbjct: 320 IFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPD 363
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y +A +FN +P D +WT M+ + N EAL+ F++ K+
Sbjct: 302 NALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVT 361
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+VT VLSAC H G +D G+
Sbjct: 362 PDEVTYVGVLSACTHTGMVDEGK 384
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 72/332 (21%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVY--- 94
++ L ++A ++KT + + + I FC HF + Y I VF +QEPN+ ++
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62
Query: 95 ---HAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKN 130
HA SS P+ A+ Y+ M+ +L + +HG V K
Sbjct: 63 FRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLA 185
G ++V T+++ Y + + ++ +V FDE P R ++ +I YA A
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKV----FDESPHRDVVSYTALIKGYASRGYIENA 176
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+ +F+++P D+ SW MI+ Y++ ++EAL+ F K+ D+ TM TV+SACA
Sbjct: 177 QKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 236
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
G+++LGR + + C L + +F L K+++ WN++
Sbjct: 237 GSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTL- 295
Query: 284 EALAIHGFAH-----EALGMFDRMTYENVRPN 310
I G+ H EAL +F M PN
Sbjct: 296 ----IGGYTHMNLYKEALLLFQEMLRSGETPN 323
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ EL LF +P D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 262 NALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 321
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 322 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAH 381
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A + +F RM + P+
Sbjct: 382 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPD 426
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN + + SW MI ++ + + + D F++ +K+G
Sbjct: 366 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEP 425
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 426 DDITFVGLLSACSHSGMLDLGRHIF-------RSMTQDYKMTPK-LEHYGCMIDLLGHSG 477
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M E P+G
Sbjct: 478 LFKEAEEMINTMEME---PDG 495
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 125/274 (45%), Gaps = 85/274 (31%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMV-------------------------------DNYSYSN 150
+HGQ K GFSS VFVQTA++ D Y+ ++
Sbjct: 71 ALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTD 130
Query: 151 KFFESRRV---------------------------SRRLFDEMPERKFATWNTMIDAYAR 183
+ ++ +V +R +FD M E+ +WN+MI AY +
Sbjct: 131 QMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQ 190
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ LF +MPA +I +W TM+ + QN+ + E LD F++ K + D +T+ V
Sbjct: 191 GEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGV 250
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
LSACAH G+L G + IY C S+ + L VF+K + K++
Sbjct: 251 LSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDI 310
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
CWN++ LA+HG + AL +F++M + RP+
Sbjct: 311 YCWNALISGLALHGHGYAALNIFNKMRKNHTRPD 344
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ + +F K DI W +I+ + + AL+ FNK +K+ T
Sbjct: 284 ALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRP 343
Query: 231 DQVTMATVLSACAHLGALDLG 251
D +T +LSAC+H G + G
Sbjct: 344 DDITFIGLLSACSHSGLVQEG 364
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 35/223 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG+V NG+ + VFV+T++V+ Y+ + + + R +RR+FDE+ +R +WN+++ Y
Sbjct: 52 VHGRVVANGYCTNVFVRTSLVNLYAIAGGY-DGVRKARRVFDEIVDRNIVSWNSLLAGYV 110
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R ++ +F++MP ++ SWTTMI +Q + ++AL F++ +++G DQV +
Sbjct: 111 RCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVA 170
Query: 238 VLSACAHLGALDLGRGIQIY--------------------------CRSLGRSLLVFFKL 271
LSACA LG L LG I Y C + ++ VF +
Sbjct: 171 ALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGM 230
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMF---DRMTYENVRPNG 311
++++ + W S+ A G A EALG+F R+ + RP+G
Sbjct: 231 QQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDG 273
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I YA + +F M SWT+MIT +++ EAL F ++ GT
Sbjct: 208 NSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTD 267
Query: 230 S---DQVTMATVLSACAHLGALDLGR 252
D +T VL AC+H G +D GR
Sbjct: 268 EGRPDGITFIGVLCACSHAGFVDQGR 293
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 66/343 (19%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
I +L+ C++ ++L + V+ + ++A Q + C + + VF Q+ P
Sbjct: 13 IIARLRTCATFRDLLRAHGLAVRLCLSQSSYVATQIVHICNAHGRAA-HAARVFAQIPAP 71
Query: 90 NVFVYHA----FSSLRHPLQAIAFYLYMLR-----------------------------A 116
N+ +++A ++ A+ Y+ MLR A
Sbjct: 72 NLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAA 131
Query: 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
L VH V ++G S VQ ++++ Y+ +R+ FD M E+ +WNT
Sbjct: 132 SRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDL----STARKAFDGMREKDVVSWNT 187
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I A+AR+ ++ LF MP + SWT +++ Y+ F A++ F + G D
Sbjct: 188 LISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPD 247
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFF 269
V++ VL ACA LGAL+LGR I YC G +L +F
Sbjct: 248 DVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFH 307
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPNG 311
+ EK+++ W++ LA HG A EA+ +F+ M E V PNG
Sbjct: 308 GMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNG 350
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-T 228
N +++ YA+ + LF+ M D+ SW+T I + + + REA+ F + G
Sbjct: 287 NALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRV 346
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+ +T +LSAC+H G +D G
Sbjct: 347 MPNGITFVGLLSACSHAGLVDEG 369
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 71/359 (19%)
Query: 18 FPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77
PT SF I+ LK C++ LE V+A I++ + D F+ QF++ C S +F
Sbjct: 64 LPTLRSFDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNF-S 122
Query: 78 YTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL------------- 120
YT VF + P+ +++ +S ++ ++ M R++ +
Sbjct: 123 YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACS 182
Query: 121 --------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
HG + G VFV T+++D Y + +R+V FDEM ER
Sbjct: 183 KVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKV----FDEMGERNVV 238
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK--- 224
+W MI YA ++L LF++MP + SW +I+ Y + R A F++
Sbjct: 239 SWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN 298
Query: 225 ----------KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
D+ M +++SAC+ +G+L+L + + Y
Sbjct: 299 RDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAAL 358
Query: 258 ------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ R+ +F ++ +++L+ + S+ + L+IHG +A+ +F RM E + P+
Sbjct: 359 IDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPD 417
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 149/330 (45%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVF 92
L +C ++ ++ + + + + D F A + ISFC S I + L+F + F
Sbjct: 20 LDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSF 79
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
+++ AF+ + P ++ Y YML L +H Q
Sbjct: 80 IWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQA 139
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR---- 183
+ G+ + FVQ ++ Y+ N +RRLFD R TW +I+ YA+
Sbjct: 140 VRLGWEAYDFVQNGLLHLYASCN----CMDSARRLFDGSVNRDVVTWTAVINGYAKSGQV 195
Query: 184 -LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+A LF++MP + SW+ MIT Y+Q FREAL+ FN + +G + + L+AC
Sbjct: 196 VVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTAC 255
Query: 243 AHLGALDLGRGIQIYC--------RSLGRSLL--------------VFFKLREKNLLCWN 280
A LGALD GR I Y R LG +L+ VF ++ ++++ +
Sbjct: 256 AFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFT 315
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ LA HG + A+ MF RM E V PN
Sbjct: 316 SLISGLANHGHSATAIEMFTRMQNEGVCPN 345
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ + +F++M D+ ++T++I+ + + A++ F + + G
Sbjct: 285 ALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCP 344
Query: 231 DQVTMATVLSACAHLGALDLG 251
++VT +LSAC+ +G ++ G
Sbjct: 345 NEVTFICLLSACSRVGLVEEG 365
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 59/332 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
LK C S+ E + + A + + + A + +SF S + ID++ +F Q+ P +
Sbjct: 12 LKNCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTIS 71
Query: 93 ----VYHAFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQV 127
+ FS ++P +++ ++ MLR V L VH ++
Sbjct: 72 NWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRI 131
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G F+ +++ Y +R+V FDEM R +WN M+D YA+ +L
Sbjct: 132 AKEGLWFDRFIANSLIHMYGSCGDIGSARKV----FDEMLIRNSVSWNAMLDGYAKCGDL 187
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+F MP D+ SW++MI + ++ AL F + + G ++ VTM +VL AC
Sbjct: 188 DSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCAC 247
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVF--FKLREKNLLC 278
AHLGAL+ GR + Y C ++ ++ VF + + ++L
Sbjct: 248 AHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLM 307
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN+I LA HG E+L +F M + P+
Sbjct: 308 WNTIIGGLATHGLVXESLELFKEMQVLGIVPD 339
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 31/217 (14%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
T+HG K GF S +F+Q +++ Y + ++ LF++MP+R TWN +I
Sbjct: 31 TIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAML----LFEKMPQRDAVTWNIVIAQL 86
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ ++ F +MP ++RSWT+MI+ + Q + EA+D F K + ++VT+
Sbjct: 87 AKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVV 146
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
+VL+ACA LG LDLGR + Y C L + VF+++ E+
Sbjct: 147 SVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEER 206
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ W+++ LA+HG A EAL +F M V+PNG
Sbjct: 207 TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNG 243
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+R NT+ID Y + L +F +M + SW+ MI + + Q EAL F++
Sbjct: 174 KRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSE 233
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
K G + VT +L AC+H+G +D GR
Sbjct: 234 MIKLGVKPNGVTFIGLLHACSHMGLIDEGR 263
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 55/312 (17%)
Query: 50 IVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF----VYHAFSSLRHPL 104
+++T +D F A + ++FC + Y LVF Q+ P F + +++ P
Sbjct: 1 MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60
Query: 105 QAIAFY-LYMLRA---------------EVLLT--TVHGQVWKNGFSSPVFVQTAMVDNY 146
QAI FY L ML+ VL +H K GF+S ++Q +++ Y
Sbjct: 61 QAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMY 120
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP-AWDIRSW 200
S +R+V FD+M + +W TMI AYA+ A LF +M A ++ W
Sbjct: 121 SNCGCLVSARKV----FDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCW 176
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--- 257
MI + ++ + EAL FN+ + SG D+VTMA++L AC HLGAL+LG+ + +Y
Sbjct: 177 NIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK 236
Query: 258 -------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
C S+ ++ VF ++ EK+++ W ++ LA+ G +AL +
Sbjct: 237 EKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALEL 296
Query: 299 FDRMTYENVRPN 310
F M V+P+
Sbjct: 297 FHEMQMSEVKPD 308
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
E E A ++D YA+ + +F +MP D+ +WT +I + Q +AL+
Sbjct: 237 EKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALEL 296
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
F++ + S D +T VL+AC+H G ++ G
Sbjct: 297 FHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 328
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 110/214 (51%), Gaps = 31/214 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K GF S V VQTA+V Y+ ++ V FD+M ER TWN MI +A+
Sbjct: 33 HNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV----FDKMSERSTRTWNAMITGHAQ 88
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ LF +M D+ SWT +I Y+QN E+L+ FN+ +K+G SD+ M +V
Sbjct: 89 NRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSV 148
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSL----------------------LVFFKLREKNL 276
LSACA L AL+LGR Y G +L VF K+ ++N
Sbjct: 149 LSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE 208
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WNSI A HG ++A+ +F++M ++PN
Sbjct: 209 VSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPN 242
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 36/179 (20%)
Query: 75 FIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS 134
+ D ++ VF QM++ S R + ++ L A L H V ++GF+
Sbjct: 122 YGDESLNVFNQMRKT------GMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL 175
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA 194
+ V +A+VD Y+ S ++ +V F+KMP
Sbjct: 176 DIVVGSALVDMYAKSGSMEDACQV------------------------------FDKMPQ 205
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
+ SW ++IT +Q+ + +A+ F + ++G ++++ VLSAC+H G ++ GRG
Sbjct: 206 RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRG 264
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 163/383 (42%), Gaps = 102/383 (26%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFL--AKQFISFCTSRFHFI 76
P +SF+ + L+ C SIK L+ ++A+I+KT + D L + + + C I
Sbjct: 35 PHKLSFL------STLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLP-I 87
Query: 77 D--YTILVFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYMLRAEVLLTT------- 122
D Y + + Q++ PN+ +Y+A +S ++ + Y ML ++
Sbjct: 88 DPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVL 147
Query: 123 --------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
VHGQ K G +S V+V ++ Y+ + R +R++FD P+
Sbjct: 148 KACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVI----RSARKVFDTSPQ 203
Query: 169 RKFATWNTMIDAYARL---------------------------------------AELLF 189
R +W TMI Y ++ A +F
Sbjct: 204 RDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVF 263
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+MP ++ SW +MI+ +Q QF+E+L F K ++ G D VT+ VL++CA+LG L+
Sbjct: 264 QEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLE 323
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG+ + Y C S+ ++ VF + K++ + ++ LA
Sbjct: 324 LGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLA 383
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+HG +AL +F M + P+
Sbjct: 384 MHGQGGKALDLFSEMPKMGIEPD 406
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F M D+ S+T MI + + Q +ALD F++ K G
Sbjct: 345 NALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIE 404
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+VT VL+AC+H+G ++ GR
Sbjct: 405 PDEVTFVGVLTACSHVGLVEEGR 427
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 149/329 (45%), Gaps = 72/329 (21%)
Query: 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVY------ 94
L ++A ++KT + + + I FC HF + Y I VF +QEPN+ ++
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNGFS 133
HA SS P+ A+ Y+ M+ +L +HG V K G+
Sbjct: 63 HALSS--DPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELL 188
++V T+++ Y + + ++R+V FD+ R ++ +I YA A+ L
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKV----FDQSSHRDVVSYTALIKGYASRGYIENAQKL 176
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F+++P D+ SW MI+ Y++ ++EAL+ F K+ D+ TM TV+SACA G++
Sbjct: 177 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 236
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+LGR + ++ C + + +F L K+++ WN++
Sbjct: 237 ELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTL---- 292
Query: 287 AIHGFAH-----EALGMFDRMTYENVRPN 310
I G+ H EAL +F M PN
Sbjct: 293 -IGGYTHMNLYKEALLLFQEMLRSGESPN 320
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ E+ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 259 NALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 319 PNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 378
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ A+HG A+ A +F +M + P+
Sbjct: 379 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPD 423
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ M + SW MI ++ + + A D F+K +K+G
Sbjct: 363 SLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP 422
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ + + KL + + + L G
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHI---FRSMSQDYKITPKLEH-----YGCMIDLLGHCG 474
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M M E P+G
Sbjct: 475 LFKEAKEMIRTMPME---PDG 492
>gi|255577499|ref|XP_002529628.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530913|gb|EEF32773.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 400
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 140/294 (47%), Gaps = 40/294 (13%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L KC+++ L+ + + + + F + + + FC +Y +F + PN+++
Sbjct: 16 LSKCNNLNHLKQLQSYLTVIGHSQTQFYSFKLVRFCILNLSNFNYARYIFNHLHSPNIYL 75
Query: 94 YHAF-----SSLRHPLQAIAFYLYMLR-----------AEVLLT-----TVHGQVWKNGF 132
+ A S+ H L A Y M+R VL + VH Q+ K GF
Sbjct: 76 FTALVTAYASNPDHHLSAFELYRDMVRRAHPKPNHFIFPHVLKSCQNTKVVHSQIAKLGF 135
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL----- 187
S VQTA+VD+YS +F +R++FDEM ER +W MI Y R+ E+
Sbjct: 136 SQYPVVQTALVDSYS---RFMSDIGCARQVFDEMSERNVVSWTAMITGYTRVGEVGNAIS 192
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLG 246
+F+KMP D+ SW ++I +QN F EA+ F K + + +QVT LSAC H G
Sbjct: 193 IFDKMPERDVPSWNSIIAGCTQNGLFIEAICLFRKMILVAQSKPNQVTTVCALSACGHTG 252
Query: 247 ALDLGRGIQIY---CRSLGR------SLLVFFKLR-EKNLLCWNSITEALAIHG 290
L LG+ I+ Y LGR +L V +++ E + + W S+ +HG
Sbjct: 253 MLQLGKWIEHYGCLVDILGRAGRFEEALEVVREMKIEPDEVVWGSLLNGCKVHG 306
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K+G+ S +FV ++V+ YS ++ +++RV FDEMP+R TW +++ YA
Sbjct: 179 VHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRV----FDEMPQRDVITWTSVVKGYA 234
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMA 236
EL LF+ MP + SW M+ Y ++ + EAL FN ++ +
Sbjct: 235 MRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLV 294
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
++LSACAHLGALD G+ I +Y C + + VF L ++
Sbjct: 295 SILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKR 354
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+LL W S+ L++HG E L F M E +P+
Sbjct: 355 DLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPD 390
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 135/270 (50%), Gaps = 55/270 (20%)
Query: 92 FVYHAFSSLRHPLQAIAFYLYMLRA---------------------EVLLTTVHGQVWKN 130
FV FS+ ++P ++I Y+ +LR+ + ++H V K
Sbjct: 824 FVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSNREIGGSLHCSVVKT 883
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LA 185
G +F+ ++ Y F + +R+LFDEMP + TWN+++D+YA+ A
Sbjct: 884 GLEWDLFISNTLIHMYGS----FRDKASARKLFDEMPYKNLVTWNSILDSYAKSGDVVSA 939
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAH 244
L+F++M D+ +W++MI Y ++ ++ EAL+ F++ + G+ +++VTM +VL ACAH
Sbjct: 940 RLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAH 999
Query: 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFF--KLREKNLLCWN 280
LG L+ G+ + Y C S+G + VF +++ + L WN
Sbjct: 1000 LGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWN 1059
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ LA HGF E+L +F +M + P+
Sbjct: 1060 AMIGGLASHGFIRESLLLFHKMRESEIDPD 1089
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 151/347 (43%), Gaps = 69/347 (19%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHF--IDYTILVFPQMQEP 89
Q+ C +I++L ++A +K+ D A + + FC TS H +DY +F QM +
Sbjct: 22 QINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 81
Query: 90 NVFVYHAF------SSLRHPLQAIAFYLYMLRAEVLLTT--------------------- 122
N F ++ S L AI + M+ E +
Sbjct: 82 NCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGK 141
Query: 123 -VHGQVWKNGFSSPVFVQTAMVDNYSYSN------KFFESRRVSRRLFDEMPERK----F 171
+HG K GF FV + +V Y F + R + + RK
Sbjct: 142 QIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEV 201
Query: 172 ATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
WN MID Y RL A +LF+KM + SW TMI+ YSQN F++A++ F + KK
Sbjct: 202 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKG 261
Query: 227 -GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
+ VT+ +VL A + LG+L+LG + +Y C + +
Sbjct: 262 EDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 321
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++VF +L +N++ W+++ AIHG A +A+ F +M VRP+
Sbjct: 322 AIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 368
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y++ A ++F ++P ++ +W+ MI ++ + Q +A+D F K +++G
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
V +L+AC+H G ++ GR
Sbjct: 367 PSDVAYINLLTACSHAGLVEEGR 389
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 154/342 (45%), Gaps = 63/342 (18%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNA-NLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
I+A+ + C S+ L+ ++A + T+ N L K S + Y +F QM
Sbjct: 18 ILASIAENCQSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMP 77
Query: 88 EPNVFVYHA-----------------FSSLRH----PLQAIAFYLYMLRAEV-------- 118
+PN F Y+ F+ +R P + +L R+ V
Sbjct: 78 QPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPS 137
Query: 119 --LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG V+K GF S +FVQ A+++ Y+ S + R+F+E +W+
Sbjct: 138 TLECDEIHGAVFKYGFCSHLFVQNALINLYAVKG----SPAAAWRVFNETVGVDVVSWSG 193
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++ A+ R EL +F+ MP D+ SWT M++ YS+ REAL+ F + +G D
Sbjct: 194 LVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPD 253
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
+VT+ +V+SAC +LG ++ G + Y C + R+ VF
Sbjct: 254 EVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFN 313
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ K+L+ WNS+ A A HG+A +A +F M + P+G
Sbjct: 314 NMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDG 355
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ YA+ + +FN M + +W +MI++ + + +A + F+ SG
Sbjct: 293 NALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIA 352
Query: 230 SDQVTMATVLSACAHLGALDLG-RGIQIYCRSLG 262
D +T +L A H G +D G R QI R G
Sbjct: 353 PDGITFLALLIAYTHKGLVDEGYRLFQIMERDYG 386
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN 190
V T M+D Y+ + +R LF++MP+R F W++MI Y ++ A +F+
Sbjct: 87 VVTWTVMIDGYASKGEM----EAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFD 142
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P ++ +W ++I YSQN EALDAF K + G D+VT+ VLSACA L LD+
Sbjct: 143 RVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDV 202
Query: 251 GRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + C L + L+F ++ KN CWNS+ A+
Sbjct: 203 GKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAV 262
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG EAL F RM N +P+
Sbjct: 263 HGKTKEALEFFGRMEESNEKPD 284
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 25/175 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
SR+LF+ MPER TWN MI Y + A +LF+KM + SW MI ++++
Sbjct: 11 SRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDM 70
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR----------------GIQIY 257
A FN+ + VT ++ A G ++ R I Y
Sbjct: 71 VAARRTFNEVPFE--LKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGY 128
Query: 258 CR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C+ ++ + +F ++ +NL+ WNS+ + +GF EAL F +M E P+
Sbjct: 129 CKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPD 183
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ A L+F +M + W +MI+ ++ + + +EAL+ F + ++S
Sbjct: 223 NALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEK 282
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D++T +VLSAC H G +++G
Sbjct: 283 PDEITFLSVLSACVHGGFVEVG 304
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 61/336 (18%)
Query: 24 FIRIHIIANQLKK-CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILV 82
FI H L+ C++I +Y I+KT L+ + + ++FC S I+Y +
Sbjct: 24 FISNHPCLTMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKL 83
Query: 83 FPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEV---LLT-------------- 121
F +M PN++ + AFS P AI+ ++ ML +++ LT
Sbjct: 84 FVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHA 143
Query: 122 ----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD----EMPERKFAT 173
+HG+V K G + F+ ++ Y Y+N S +RR+FD E+ +
Sbjct: 144 HYGAQLHGRVVKLGLQNDQFICNTII--YMYANGGLMSE--ARRVFDGKKLELYDHDVVA 199
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N+MI YA+ E+ LF+ M SW +MI+ Y +N + EAL+ FNK + G
Sbjct: 200 INSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGF 259
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
+ TM ++L+ACAHLGAL G+ + Y C S+ ++
Sbjct: 260 EVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVE 319
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
VF + L CWNSI LA++G EA F ++
Sbjct: 320 VFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKL 355
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 31/131 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +N F V V TA++D Y + V F+ P R + WN++I A
Sbjct: 285 VHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEV----FETCPRRGLSCWNSIIIGLA 340
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSA 241
N REA + F+K + S D V+ VL+A
Sbjct: 341 --------------------------MNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTA 374
Query: 242 CAHLGALDLGR 252
C HLGA++ R
Sbjct: 375 CKHLGAINKAR 385
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 31/177 (17%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIR----SWTTMITSYSQNK 211
+LF MP +WNT+I A++R A LF M I+ ++ ++ +Y+Q
Sbjct: 82 KLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLG 141
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL------GRGIQIY-------- 257
+ K G +DQ T++ A+ G + G+ +++Y
Sbjct: 142 HAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAIN 201
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C + S +F + + + WNS+ +G EAL +F++M E
Sbjct: 202 SMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEG 258
>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 133/299 (44%), Gaps = 87/299 (29%)
Query: 99 SLRHPLQAIAFYLYMLRA---------EVLLTT------------VHGQVWKNGFSSPVF 137
S +P QAI Y+ M R VLL +HGQ K GFS F
Sbjct: 835 SQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCF 894
Query: 138 VQTAMVDNY------SYSNKFFESRRV---------------------SRRLFDEMPERK 170
V TA++D Y ++ K FE V + +LFD MP +
Sbjct: 895 VGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDNMPLKD 954
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF------------ 213
A++N MI YA++ A +F+++ A DI SW +MI + +
Sbjct: 955 LASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPK 1014
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------- 257
+ A+D F++ K +D +T+A VLSACAHLG L G + +Y
Sbjct: 1015 KNAVDLFDEMKAGNHEADHLTVALVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSL 1074
Query: 258 ------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ RSL VF+K + K++ CWN+I LA+HG+ H A+ + D+M +RP+
Sbjct: 1075 IDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGIRPD 1133
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ + +F K DI W +I+ + + A+ +K + +G
Sbjct: 1073 SLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGIRP 1132
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D++T +LSAC+H G+L +Q CR L + F L K L + + + L G
Sbjct: 1133 DEITFIGLLSACSH-GSL-----VQEGCR-LFDCMEKEFGLPPK-LEHYGCMVDLLGRAG 1184
Query: 291 FAHEALGMFDRMTYE 305
F A + M +E
Sbjct: 1185 FLDPAFQLIKAMPFE 1199
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 27/176 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+F +M E+ +WN MI YA++ L LFN+MP+ D+ SWT+MI YS KQ E
Sbjct: 270 RVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 329
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL- 266
A+ F + S D++T+AT LSACAHLG+LD G + Y R +G SL+
Sbjct: 330 AVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLID 389
Query: 267 -------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
VF ++ ++ + W SI LA++GFA AL +FD+M E + P
Sbjct: 390 MYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICP 445
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 80/317 (25%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY--- 94
+SIKEL +A +V+ ++D + I + VF Q+Q P + V+
Sbjct: 28 NSIKEL---HAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHM 84
Query: 95 -HAFSSLRHPLQAIAFY---------------LYMLRAEVLLTTV-HGQV-----WKNGF 132
H S P AI FY +++ ++ ++ V GQ+ K GF
Sbjct: 85 IHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGF 144
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM 192
S +FV A++ Y F +++++FD M ER
Sbjct: 145 ESYLFVSNALIHMYV----CFGELAMAQKVFDGMLER----------------------- 177
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ SW ++I Y Q +F++ LD F + + +D VTM +SA L ++G
Sbjct: 178 ---DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGD 234
Query: 253 GIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALAIHG 290
+ Y LG +L+ VF++++EKN++ WN++ A G
Sbjct: 235 YLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVG 294
Query: 291 FAHEALGMFDRMTYENV 307
A +F+ M +V
Sbjct: 295 NLVAAKKLFNEMPSRDV 311
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + + +FN M D SWT++I+ + N AL+ F++ K G
Sbjct: 385 NSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGIC 444
Query: 230 SDQVTMATVLSACAHLGALDLG 251
T VL ACAH+G +D G
Sbjct: 445 PTHGTFVGVLLACAHVGLVDKG 466
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 155/346 (44%), Gaps = 72/346 (20%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVF 83
R H + L C +++ L ++A ++KT + + + I FC HF + Y I VF
Sbjct: 1 RNHPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVF 60
Query: 84 PQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLT---------------- 121
+QEPN+ ++ HA SS P+ A+ Y+ M+ +L
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSS--DPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118
Query: 122 -----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG V K G+ ++V T+++ Y + + ++R+V FD+ R ++
Sbjct: 119 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV----FDQSSHRDVVSYTA 174
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I YA A+ +F+++P D+ SW MI+ Y++ +EAL+ F + K+ D
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPD 234
Query: 232 QVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFF 269
+ TM +V+SACA +++LGR + I C + + +F
Sbjct: 235 ESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 294
Query: 270 KLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L K+++ WN++ I G+ H EAL +F M PN
Sbjct: 295 GLSYKDVISWNTL-----IGGYTHMNLYKEALLLFQEMLRSGESPN 335
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + E+ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 274 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+++GR I +Y C + +
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 393
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ A+HG A+ A +F RM + P+
Sbjct: 394 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 438
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ + + SW MI ++ + + A D F++ +K+
Sbjct: 378 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 437
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 438 DDITFVGLLSACSHSGMLDLGRHIF-------RSMKEDYKITPK-LEHYGCMIDLLGHSG 489
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M E P+G
Sbjct: 490 LFKEAEEMINTMEME---PDG 507
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 27/176 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+F +M E+ +WN MI YA++ L LFN+MP+ D+ SWT+MI YS KQ E
Sbjct: 229 RVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 288
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL- 266
A+ F + S D++T+AT LSACAHLG+LD G + Y R +G SL+
Sbjct: 289 AVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLID 348
Query: 267 -------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
VF ++ ++ + W SI LA++GFA AL +FD+M E + P
Sbjct: 349 MYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICP 404
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 77/273 (28%)
Query: 82 VFPQMQEPNVFVY----HAFSSLRHPLQAIAFY---------------LYMLRAEVLLTT 122
VF Q+Q P + V+ H S P AI FY +++ ++ ++
Sbjct: 28 VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 87
Query: 123 V-HGQV-----WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
V GQ+ K GF S FV A++ Y F +++++FD M ER
Sbjct: 88 VRQGQMVRVHSMKLGFESXSFVSNALIHMYV----CFGELAMAQKVFDGMLER------- 136
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
D+ SW ++I Y Q +F++ LD F + + +D VTM
Sbjct: 137 -------------------DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMM 177
Query: 237 TVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREK 274
+SA L ++G + Y LG +L+ VF++++EK
Sbjct: 178 KAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEK 237
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
N++ WN++ A G A +F+ M +V
Sbjct: 238 NIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDV 270
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + + +FN M D SWT++I+ + N AL+ F++ K G
Sbjct: 344 NSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGIC 403
Query: 230 SDQVTMATVLSACAHLGALDLG 251
T VL ACAH+G +D G
Sbjct: 404 PTHGTFVGVLLACAHVGLVDKG 425
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 26/178 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LF++MPE+ +W +MI AYA+ +L FNKMP ++ SW +MI+SY Q+ F
Sbjct: 157 ARELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDF 216
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------------I 254
+EALD FN+ G D T +V SAC+HLG L LG I
Sbjct: 217 QEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLGVIAATALI 276
Query: 255 QIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++Y C + R+ +F K+ +K++ WN + ++LA+HG A +AL +F M + ++PN
Sbjct: 277 EMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPN 334
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS-------RRLFDEMPERKFATWN 175
VH ++ K GFS V A+ Y +KF + + R++FDEM R WN
Sbjct: 52 VHCRILKTGFSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWN 111
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
MI Y ++ LFN M D SW TMI+ Y + + +A + F K +
Sbjct: 112 RMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNV-- 169
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
V+ +++SA A G L R + F K+ ++N++ WNS+ + HG
Sbjct: 170 --VSWTSMISAYAKAGDLATAR-------------MFFNKMPQRNVVSWNSMISSYVQHG 214
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EAL +F++M E + P+G
Sbjct: 215 DFQEALDLFNQMLSEGITPDG 235
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+I+ YA+ ++ LF K+ D+ W M+ S + + Q ++AL F+ +K G
Sbjct: 274 ALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKP 333
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ T L AC+H G ++ G+ I +K+R + + + I + L+ +G
Sbjct: 334 NDFTFLGALFACSHGGMVEEGQTIFDMMEKE-------YKIRPR-IEHFGCIVDLLSRNG 385
Query: 291 FAHEALGMFDRMTYE 305
EAL + D+M +E
Sbjct: 386 RLEEALDVVDKMPFE 400
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 145/340 (42%), Gaps = 67/340 (19%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L +CS+ LE ++A I F R + Y +F P+VF+
Sbjct: 16 LSRCSTRAHLEQLHAHAFVAGRAAAQTTTFHLIRFAAFRLSCLTYARHLFDATPHPSVFL 75
Query: 94 YHA-----------------------------FSSLRHPLQAIAFYLY--MLRAEV---- 118
Y A LRH A ++Y +LRA
Sbjct: 76 YSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQFVYPLVLRAASGVGV 135
Query: 119 -LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
++ ++H K+GF ++T+++D YS ++R+ LFD + ER +W +
Sbjct: 136 GIVKSIHSHACKSGFCGHDIIRTSVLDGYSRHGMMADARK----LFDGLTERNVVSWTAL 191
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ YAR ++ LF +MP D+ +W +I SQN F EA+ F + +G +
Sbjct: 192 VSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFRPNA 251
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----CRSLGRSLL------------------VFFK 270
T++ VLSAC HLG L +G+ I Y C G S+L +F +
Sbjct: 252 TTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKCGNLEGARWIFDE 311
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +++L WNS+ LA+HG + A+ +F+ M E V P+
Sbjct: 312 VSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPD 351
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 110 YLYMLRAEVLLTTVHGQVWKN--GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167
+L ML+ L +H W+ GF S V ++D Y +R +FDE+
Sbjct: 263 HLGMLKIGKL---IHCYAWRTCVGFGSSVL--NGLIDMYGKCGNL----EGARWIFDEVS 313
Query: 168 ERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+R TWN++I+ A + + A+ FN+ + G
Sbjct: 314 DRSLTTWNSLINCLA--------------------------LHGHSKCAISVFNEMRGEG 347
Query: 228 TGSDQVTMATVLSACAHLGALDLG 251
D VT +L+AC H G +D G
Sbjct: 348 VEPDVVTFVGLLNACTHGGFVDEG 371
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 162/338 (47%), Gaps = 62/338 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID-YTILVFPQMQE 88
+ ++L C ++ +++ ++ +++ + C++ + I T +D Y V +Q
Sbjct: 52 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111
Query: 89 PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEV---------------------LLTTV 123
N F++ A ++ +AIA Y M + E+ L
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 124 HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
H Q ++ GF V+V M+D Y ES +R++FDEMPER +W +I AYA
Sbjct: 172 HAQTFRLRGFCF-VYVGNTMIDMYVKC----ESIDCARKVFDEMPERDVISWTELIAAYA 226
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R+ + LF +P D+ +WT M+T ++QN + +EAL+ F++ +KSG +D+VT+A
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286
Query: 238 VLSACAHLGALDLG-RGIQIYCRS---------LGRSLL--------------VFFKLRE 273
+SACA LGA R +QI +S +G +L+ VF +
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNN 346
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
KN+ ++S+ LA HG A EAL +F M T ++PN
Sbjct: 347 KNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPN 384
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 70/347 (20%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHF--IDYTILVFPQMQEP 89
Q+ C +I++L ++A +K+ D A + + FC TS H +DY +F QM +
Sbjct: 29 QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88
Query: 90 NVFVYHAF------SSLRHPLQAIAFYLYMLRAEVLLTT--------------------- 122
N F ++ S L AI + M+ E +
Sbjct: 89 NCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGK 148
Query: 123 -VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--SRRLFDE----MPERK----- 170
+HG K GF FV + +V Y F + RV + + ++ M +R+
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCG-FMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
WN MID Y RL A +LF+KM + SW TMI+ YS N F++A++ F + KK
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
+ VT+ +VL A + LG+L+LG + +Y C + +
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ VF +L +N++ W+++ AIHG A +A+ F +M VRP+
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y++ + +F ++P ++ +W+ MI ++ + Q +A+D F K +++G
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
V +L+AC+H G ++ GR
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGR 395
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 159/365 (43%), Gaps = 89/365 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFV 93
++C S+++++ V+A +V D ++ I + + LVF ++ P+ F+
Sbjct: 16 RRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFM 75
Query: 94 YHAF----SSLRHPLQAIAFYLYMLR--AEVLLTT------------------------- 122
Y+ + P A++ Y M R A+ L T
Sbjct: 76 YNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGA 135
Query: 123 -VHGQVWKNGFSSPVFVQTAMVD------NYSYSNKFFE-----------------SRR- 157
VH V K G S FV+ A++ + + F+ +RR
Sbjct: 136 QVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRG 195
Query: 158 ---VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+R LFDE P + +WN MI AYA+L ++ LF+ P D+ SW MI+ Y +
Sbjct: 196 DIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR 255
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG---------------- 253
++A++ F + + G D VTM ++LSACA G LD GR
Sbjct: 256 CGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTT 315
Query: 254 ------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
I +Y C S+ +L VF+ +++KN+ WNSI LA+HG A E++ +F +M
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQG 375
Query: 306 NVRPN 310
NV+P+
Sbjct: 376 NVKPD 380
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A N +ID YA+ + +F M ++ +W ++I + + E++ F K +
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQG 375
Query: 227 GTGSDQVTMATVLSACAHLGALDLG 251
D++T VL+AC+H G +D G
Sbjct: 376 NVKPDEITFVAVLAACSHGGMVDKG 400
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 162/367 (44%), Gaps = 84/367 (22%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLA-KQFISFCTSRFHFIDYTILVFPQM 86
H+ ++ L C S+K L+ V+A + KT + D +A K + S +DY +F
Sbjct: 6 HLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHF 65
Query: 87 QEPNVFVYHA-----------------FSSLRH----PLQAIAFYLYMLRAEVLLTTV-- 123
P+VF+++ F +R PL + +F ++L+A ++
Sbjct: 66 PNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSF-AFLLKAAASYRSLES 124
Query: 124 ----HGQVWKNGFSSPVFVQTAMVDNYS------YSNKFFESR----------------- 156
H Q +G + +FV T +V YS ++ K FE
Sbjct: 125 GIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184
Query: 157 ----RVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
+ + +F+ MP R +WN M+ Y + EL LF +MP D SW+TMI +
Sbjct: 185 CGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGF 244
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------- 257
+ N F EA F + ++ G ++V++ LSACA GA++ G+ + +
Sbjct: 245 AHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMV 304
Query: 258 ------------CRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C ++G + LVF ++ EK +++ W S+ LA+HG+ EA+ +F M
Sbjct: 305 SVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEE 364
Query: 305 ENVRPNG 311
+RP+G
Sbjct: 365 SGIRPDG 371
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 29/129 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K+GF V V A++D YS ++R +F+ MPE++
Sbjct: 291 LHGFIEKSGFLWMVSVNNALLDTYSKCGNV----GMARLVFERMPEKR------------ 334
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
I SWT+MI + + EA+ F++ ++SG D + ++L AC
Sbjct: 335 -------------SIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYAC 381
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 382 SHAGLIEKG 390
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 155/346 (44%), Gaps = 72/346 (20%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC--TSRFHFIDYTILVF 83
R H + L C +++ L ++A ++KT + + + + FC + F + Y I VF
Sbjct: 1 RNHPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVF 60
Query: 84 PQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+QEPN+ ++ HA SS P+ AI Y+ M+ +L +
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSS--DPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKV 118
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG V K G+ ++V T+++ Y + ++ ++ +V FD R ++
Sbjct: 119 SKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKV----FDGSSHRDVVSYTA 174
Query: 177 MIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I YA A+ +F+++P D+ SW +I+ Y+ +EALD F + K+ D
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPD 234
Query: 232 QVTMATVLSACAHLGALDLGRGIQ--IYCRSLGRSLLV--------------------FF 269
+ TM TV+SACA G++ LGR + I LG +L + F
Sbjct: 235 ESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQ 294
Query: 270 KLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L K+++ WN++ I G+ H EAL +F M PN
Sbjct: 295 GLSNKDVISWNTM-----IGGYTHLNLYKEALLLFQEMLRSGENPN 335
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 29/185 (15%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
R+V + D N +ID Y++ E+ LF + D+ SW TMI Y+
Sbjct: 254 GRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTH 313
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
++EAL F + +SG + VTM ++L ACA LGA+D GR I +Y
Sbjct: 314 LNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNAS 373
Query: 258 ------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C + + VF + + L N++ A+HG A+ A +F RM
Sbjct: 374 SLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKN 433
Query: 306 NVRPN 310
+ P+
Sbjct: 434 GIEPD 438
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN M + + MI ++ + + A D F++ +K+G
Sbjct: 378 SLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEP 437
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 438 DDITFVGLLSACSHSGMLDLGRRIF-------RSMTQNYKITPK-LEHYGCMIDLLGHLG 489
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + MT E P+G
Sbjct: 490 LFKEAEEMINTMTME---PDG 507
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 159/365 (43%), Gaps = 89/365 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFV 93
++C S+++++ V+A +V D ++ I + + LVF ++ P+ F+
Sbjct: 16 RRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFM 75
Query: 94 YHAF----SSLRHPLQAIAFYLYMLR--AEVLLTT------------------------- 122
Y+ + P A++ Y M R A+ L T
Sbjct: 76 YNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGA 135
Query: 123 -VHGQVWKNGFSSPVFVQTAMVD------NYSYSNKFFE-----------------SRR- 157
VH V K G S FV+ A++ + + F+ +RR
Sbjct: 136 QVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRG 195
Query: 158 ---VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+R LFDE P + +WN MI AYA+L ++ LF+ P D+ SW MI+ Y +
Sbjct: 196 DIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR 255
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG---------------- 253
++A++ F + + G D VTM ++LSACA G LD GR
Sbjct: 256 CGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTT 315
Query: 254 ------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
I +Y C S+ +L VF+ +++KN+ WNSI LA+HG A E++ +F +M
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQG 375
Query: 306 NVRPN 310
NV+P+
Sbjct: 376 NVKPD 380
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A N +ID YA+ + +F M ++ +W ++I + + E++ F K +
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQG 375
Query: 227 GTGSDQVTMATVLSACAHLGALDLG 251
D++T VL+AC+H G +D G
Sbjct: 376 NVKPDEITFVAVLAACSHGGMVDKG 400
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 155/346 (44%), Gaps = 72/346 (20%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVF 83
R H + L C +++ L ++A ++KT + + + + C HF + Y I VF
Sbjct: 1 RNHPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVF 60
Query: 84 PQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+QEP + ++ HA SS P+ A+ Y+ M+ +L +
Sbjct: 61 DTIQEPXLLIWNTMFRGHALSS--DPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HGQV K GF +++ T+++ Y + + ++++V D+ R ++
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVX----DKSSHRDVVSYTA 174
Query: 177 MIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I YA A +F+++P D+ SW I+ Y++ ++EAL+ F K K+ D
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPD 234
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
+ TM TVLSACA G+++LGR + + C L + +F
Sbjct: 235 ESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQ 294
Query: 270 KLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L K+++ WN++ I G+ H EAL +F M +PN
Sbjct: 295 GLSNKDVISWNTL-----IGGYTHMNLYKEALLLFQDMLRSGEKPN 335
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ EL LF + D+ SW T+I Y+ ++EAL F +SG
Sbjct: 274 NALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK 333
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++LSACAHLGA+D+GR I +Y C + +
Sbjct: 334 PNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQ 393
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ A+HG A+ A +F RM + P+
Sbjct: 394 QVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD 438
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ M + SW MI ++ + + A D F++ +K+G
Sbjct: 378 SLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEP 437
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ R + KL + + + G
Sbjct: 438 DDITFVGLLSACSHSGMLDLGRHI---FRSMTRDYKLMPKLEH-----YGCMIDLXGHSG 489
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M E P+G
Sbjct: 490 LFKEAEKMINTMEME---PDG 507
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 31/217 (14%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T +H K G S+ +FV ++++D Y + ++RV F+ +PE+ WN++I
Sbjct: 399 TRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRV----FNSLPEKNTVCWNSLISG 454
Query: 181 YA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ AE LFNKMPA + SW TMI+ Y++N++F +AL+ F SG ++T+
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514
Query: 236 ATVLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLRE 273
++VL ACA+L +L++GR GI+ +Y +S L S VF+++ E
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPE 574
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KN + W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPN 611
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 27/176 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+ R+FD+M R +W ++D YA L +L + + MPA + SW T+I + Q
Sbjct: 300 AAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGD 359
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGALDLGRGIQIY---- 257
EAL +++ G + ++VLSACA H AL +G ++
Sbjct: 360 TAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSS 419
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C+ + VF L EKN +CWNS+ + +G EA G+F++M N
Sbjct: 420 LIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARN 475
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLF MPE+ ++ TM+DA R A L+ + P + +T MI+ + +N+
Sbjct: 168 ARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELH 227
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++A F K + VT+ V+ AC G DL G+ L V L E
Sbjct: 228 KDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVV--------GLAVKCNLFE 279
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K++ NS+ G A A +FD M +V
Sbjct: 280 KSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDV 313
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ K G +F+ TA+ D Y+ S SRRV F +MPE+ T
Sbjct: 533 VHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRV----FYQMPEKNNIT--------- 579
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
WT M+ ++N E++ F ++G ++ T +L AC
Sbjct: 580 -----------------WTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFAC 622
Query: 243 AHLGALD 249
+H G ++
Sbjct: 623 SHCGLVE 629
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 151/334 (45%), Gaps = 59/334 (17%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
I+ + K + L+ V + ++ + + FL + + FCT R + Y +F + P
Sbjct: 27 ISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFP 86
Query: 90 NVFVYHAF-----SSLR-HPLQAIAFYLYMLRAEV-----------LLTT---------- 122
N +Y A SSL H A +F+ M+ V L +T
Sbjct: 87 NTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTP 146
Query: 123 -VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH ++K+GF V VQTA++ +Y+ S ++R+LFDEM ER +W M+ Y
Sbjct: 147 LVHTHLFKSGFHLYVVVQTALLHSYASSVSHIT---LARQLFDEMSERNVVSWTAMLSGY 203
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTM 235
AR ++ LF MP D+ SW ++ + +QN F EA+ F + + ++VT+
Sbjct: 204 ARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTV 263
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
VLSACA G L L +GI + C +L + VF +
Sbjct: 264 VCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASK 323
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K+L WNS+ A+HG + EA+ +F+ M N+
Sbjct: 324 KSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNI 357
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 33/138 (23%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +H ++ SS VFV ++VD Y E+ V F ++ WN+MI
Sbjct: 278 LAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSV----FKMASKKSLTAWNSMI 333
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK---SGTGSDQVTM 235
+ +A + + EA+ F + K + D +T
Sbjct: 334 NCFA--------------------------LHGRSEEAIAVFEEMMKLNINDIKPDHITF 367
Query: 236 ATVLSACAHLGALDLGRG 253
+L+AC H G + GRG
Sbjct: 368 IGLLNACTHGGLVSKGRG 385
>gi|255547321|ref|XP_002514718.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546322|gb|EEF47824.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 399
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 62/343 (18%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID-YTILVF 83
+ HI+ L C+ I +++ V+A I+ C++ + + T+ +D Y +F
Sbjct: 39 LETHIVTT-LGSCTDISQIKQVHAHILSNGLAQCCYVITKLVRTLTNLNIPMDPYPRSIF 97
Query: 84 PQMQEPNVFVYHAF---SSLRHPL-QAIAFYLYMLRAEV--------------------- 118
Q++ PN F+Y A S+ L +++ Y +M V
Sbjct: 98 NQVKFPNPFLYSAVIRGYSIEGILSESVKVYSFMRMEHVGPVSFTFSAIFKACGAVGDLH 157
Query: 119 LLTTVHGQ-VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
L +H Q + GF S +FV ++D Y R++F+ MPE+ +W M
Sbjct: 158 LGRQMHAQSILIGGFCSDLFVSNTLIDMYIKCGVL----ECGRKVFNAMPEKDVISWTEM 213
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I AYA+ ++ LF+ +P D+ +WT M+T +SQN + REA+ F + + +G G+D+
Sbjct: 214 IVAYAKSGDMDSAHVLFDGLPVKDMVAWTAMVTGFSQNAKPREAIQFFERMQDAGIGTDE 273
Query: 233 VTMATVLSACAHLGALD----------------------LGRG-IQIY--CRSLGRSLLV 267
VT+ V+SAC+ LGA + LG I +Y C S+ + V
Sbjct: 274 VTLVGVISACSQLGAAEYADWIRDIAEKQYGYDWGYSVVLGSALIDMYSKCGSVDCAYKV 333
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F L+++N+ ++S+ A+HG A A+ +F M PN
Sbjct: 334 FKGLKDRNVFSYSSMIMGFAMHGRADAAIKLFHEMIKTGTAPN 376
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 31/217 (14%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T +H K G S+ +FV ++++D Y + ++RV F+ +PE+ WN++I
Sbjct: 399 TRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRV----FNSLPEKNTVCWNSLISG 454
Query: 181 YA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ AE LFNKMPA + SW TMI+ Y++N++F +AL+ F SG ++T+
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514
Query: 236 ATVLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLRE 273
++VL ACA+L +L++GR GI+ +Y +S L S VF+++ E
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPE 574
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KN + W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPN 611
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+RR+FD+M R +W ++D YA L +L + + MPA + SW T+I + Q
Sbjct: 300 AARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGD 359
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGALDLGRGIQIY---- 257
EAL +++ G + ++VLSACA H AL +G ++
Sbjct: 360 TAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSS 419
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C+ + VF L EKN +CWNS+ + +G EA G+F++M N
Sbjct: 420 LIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARN 475
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLF MPE+ ++ TM+DA R A L+ + P + +T MI+ + +N+
Sbjct: 168 ARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELH 227
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++A F K + VT+ V+ AC G DL G+ L V L E
Sbjct: 228 KDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVV--------GLAVKCNLFE 279
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K++ NS+ G A A +FD M +V
Sbjct: 280 KSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDV 313
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ K G +F+ TA+ D Y+ S SRRV F +MPE+ T
Sbjct: 533 VHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRV----FYQMPEKNNIT--------- 579
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
WT M+ ++N E++ F ++G ++ T +L AC
Sbjct: 580 -----------------WTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFAC 622
Query: 243 AHLGALD 249
+H G ++
Sbjct: 623 SHCGLVE 629
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 135/285 (47%), Gaps = 65/285 (22%)
Query: 81 LVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT 140
LV P P+ + + + L+A A +L + VH V K G S +FV+
Sbjct: 117 LVLPNAPNPDEYTFTSV------LKACAGLAQVLEGQ----KVHCFVTKYGCESNLFVRN 166
Query: 141 AMVDNY------SYSNKFFESRRV---------------------SRRLFDEMPERKFAT 173
++VD Y + K F+ V +R +FD M E+ +
Sbjct: 167 SLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVS 226
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSG 227
W+TMI YAR+ L LF MP ++ SW MI Y+QN+++ +A++ F + + + G
Sbjct: 227 WSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGG 286
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL------------- 266
+ VT+ +VLSACAHLGALDLG+ I + R LG +L
Sbjct: 287 LAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAK 346
Query: 267 -VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ E++++ W+ I LA++G+A+EA F M + + PN
Sbjct: 347 GVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPN 391
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N + D YA+ A+ +F++M D+ SW+ +I + EA + F + + G
Sbjct: 330 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 389
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ ++ +L+AC H G +D G
Sbjct: 390 PNDISFMGLLTACTHAGLVDKG 411
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 167/389 (42%), Gaps = 97/389 (24%)
Query: 18 FPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77
PT SF I+ LK C++ LE V+A I++ + D FL QF++ C S +F
Sbjct: 16 LPTLRSFDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNF-S 74
Query: 78 YTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL------------- 120
YT VF + P+ +++ +S ++ ++ M R++ +
Sbjct: 75 YTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACS 134
Query: 121 --------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------- 158
HG + G VFV T+++D Y + +R+V
Sbjct: 135 KVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTA 194
Query: 159 -------------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
+R+LFDEMPE+ +WN +I Y + +L +F++MP ++ S+
Sbjct: 195 MIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSF 254
Query: 201 TTMITSYSQNKQ-------FREALD---------AFNKTKKSGTGSDQVTMATVLSACAH 244
TTMI Y+++ F EA + F + D+ M +++SAC+
Sbjct: 255 TTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQ 314
Query: 245 LGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+G+L+L + + Y C S+ R+ +F ++ +++L+ + S
Sbjct: 315 MGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCS 374
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + L+IHG +A+ +F RM E + P+
Sbjct: 375 MMQGLSIHGCGPQAVSLFSRMLNEGLTPD 403
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 31/209 (14%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+N V++ ++D Y + + +V F +M ++ T N MI AYA+ L
Sbjct: 539 RNHIEVDVYLGNTLIDYYCRIGQLQSAEKV----FSQMKDKNTVTLNAMIHAYAKGGNLV 594
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F+++P D+ SW++MI +YSQ F ++L+ F + +++ D V +A+VLSACA
Sbjct: 595 SAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACA 654
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
HLGALDLG+ I Y C + +L VF ++ EK+ L WNS
Sbjct: 655 HLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNS 714
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
I LA +GF EAL +F M E RPN
Sbjct: 715 IILGLANNGFEDEALNIFYSMLTEGPRPN 743
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 166 MPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
MP + +WN +I +A E LLF++MP ++ SWT +I Y++ + EA+ F
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC---------------------- 258
G ++T+ V+ A ++LG + +G + YC
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 259 RSLGRSLLVFFK-LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ SL VF + L +NL+ W SI A+HG + EAL +F M +RPN
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPN 173
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 27/160 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I YA +L +F++M D+ SW ++I YSQ +F+E L F +
Sbjct: 449 NSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQ 508
Query: 230 SDQVTMATVLSACAHLG-----------------ALDLGRG---IQIYCR--SLGRSLLV 267
+D+VTM V+SAC HLG +D+ G I YCR L + V
Sbjct: 509 ADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKV 568
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
F ++++KN + N++ A A G A +FD++ +++
Sbjct: 569 FSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDL 608
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 29/129 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG K G S V +++D Y+ S + S ++FDEM +R+
Sbjct: 94 LHGYCVKKGIMSDARVGNSLIDLYAK----IGSVQNSLKVFDEMLDRR------------ 137
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ SWT++I+ ++ + EAL+ F + +++G +++T +V++AC
Sbjct: 138 -------------NLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINAC 184
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 185 SHGGLVEQG 193
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGAL 248
W T++ +Q+ ++A+ + K ++ G D +T VL ACA H +
Sbjct: 378 WNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVI 437
Query: 249 DLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
LG + I+ C L + +F ++ K+++ WNS+ + E L
Sbjct: 438 KLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLA 497
Query: 298 MFDRMTYENVRPN 310
+F+ M E V+ +
Sbjct: 498 LFELMQAEEVQAD 510
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 85/320 (26%)
Query: 76 IDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYML--------RAEVLL--- 120
I + LVF Q+ P+ F+Y+ + P A++ Y ML R + L
Sbjct: 28 IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVD------NYSYSNKFFESRR--- 157
VH V K G S FV+ A++ N + F+ R
Sbjct: 88 VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147
Query: 158 ------------------VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
+R LFDE P + +WN MI AYA+ LA LF+++P
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE 207
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG- 253
D+ SW MI+ Y + AL+ F + ++ G D VTM ++LSACA G LD+G+
Sbjct: 208 RDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRL 267
Query: 254 ---------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I +Y C S+ + VF+ +R+K++ WNSI LA+HG
Sbjct: 268 HSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHG 327
Query: 291 FAHEALGMFDRMTYENVRPN 310
E++ MF++M VRP+
Sbjct: 328 HVLESIDMFEKMLKGKVRPD 347
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT--WNTMIDAYAR 183
Q+ + G + +++ + S +R+ L D F N +ID YA+
Sbjct: 235 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 294
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ +F M D+ +W +++ + + E++D F K K D++T V
Sbjct: 295 CGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAV 354
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSITEALAIHGFA 292
L AC+H G +D GR FF L E N+ + + + L G
Sbjct: 355 LIACSHGGMVDKGR--------------EFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLL 400
Query: 293 HEALGMFDRMTYENVRPN 310
EA D M E PN
Sbjct: 401 KEAFEFIDTMKCE---PN 415
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 85/320 (26%)
Query: 76 IDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYML--------RAEVLL--- 120
I + LVF Q+ P+ F+Y+ + P A++ Y ML R + L
Sbjct: 28 IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVD------NYSYSNKFFESRR--- 157
VH V K G S FV+ A++ N + F+ R
Sbjct: 88 VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147
Query: 158 ------------------VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
+R LFDE P + +WN MI AYA+ LA LF+++P
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE 207
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG- 253
D+ SW MI+ Y + AL+ F + ++ G D VTM ++LSACA G LD+G+
Sbjct: 208 RDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRL 267
Query: 254 ---------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I +Y C S+ + VF+ +R+K++ WNSI LA+HG
Sbjct: 268 HSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHG 327
Query: 291 FAHEALGMFDRMTYENVRPN 310
E++ MF++M VRP+
Sbjct: 328 HVLESIDMFEKMLKGKVRPD 347
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT--WNTMIDAYAR 183
Q+ + G + +++ + S +R+ L D F N +ID YA+
Sbjct: 235 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 294
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ +F M D+ +W +++ + + E++D F K K D++T V
Sbjct: 295 CGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAV 354
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSITEALAIHGFA 292
L AC+H G +D GR FF L E N+ + I + L G
Sbjct: 355 LIACSHGGMVDKGR--------------EFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLL 400
Query: 293 HEALGMFDRMTYENVRPN 310
EA D M E PN
Sbjct: 401 KEAFEFIDTMKCE---PN 415
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 155/328 (47%), Gaps = 51/328 (15%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+KC S++ + ++A +T + L K F S F + Y +F QM +P F
Sbjct: 15 EKCISMRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFF 74
Query: 94 YH------------AFSSL------RHPLQAIAF-YLYMLRAEV----LLTTVHGQVWKN 130
Y+ +FSSL R+ + F + ++L++ L+ +HG V+K
Sbjct: 75 YNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLKSRSFTMPLVHDIHGAVFKF 134
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF + VQ A++ Y+ +R+V + +W+ ++ A+A+ EL
Sbjct: 135 GFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDVA 194
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+F+ MP D+ SWT M+++YS+ K+ E LD F + + +G D+VT+ +V+SACA L
Sbjct: 195 RKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAEL 254
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
G ++GR + + C L + VF + + K+L+ WN++
Sbjct: 255 GDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSLITWNAMM 314
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
A HG+A +A +F+ M V P+G
Sbjct: 315 MVCANHGYAEDAFRLFEGMIGSGVVPDG 342
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 85/320 (26%)
Query: 76 IDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYML--------RAEVLL--- 120
I + LVF Q+ P+ F+Y+ + P A++ Y ML R + L
Sbjct: 28 IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVD------NYSYSNKFFESRR--- 157
VH V K G S FV+ A++ N + F+ R
Sbjct: 88 VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147
Query: 158 ------------------VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
+R LFDE P + +WN MI AYA+ LA LF+++P
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE 207
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG- 253
D+ SW MI+ Y + AL+ F + ++ G D VTM ++LSACA G LD+G+
Sbjct: 208 RDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRL 267
Query: 254 ---------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I +Y C S+ + VF+ +R+K++ WNSI LA+HG
Sbjct: 268 HSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHG 327
Query: 291 FAHEALGMFDRMTYENVRPN 310
E++ MF++M VRP+
Sbjct: 328 HVLESIDMFEKMLKGKVRPD 347
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT--WNTMIDAYAR 183
Q+ + G + +++ + S +R+ L D F N +ID YA+
Sbjct: 235 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 294
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ +F M D+ +W +++ + + E++D F K K D++T V
Sbjct: 295 CGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAV 354
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSITEALAIHGFA 292
L AC+H G +D GR FF L E N+ + + + L G
Sbjct: 355 LIACSHGGMVDKGR--------------EFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLL 400
Query: 293 HEALGMFDRMTYENVRPN 310
EA D M E PN
Sbjct: 401 KEAFEFIDTMKCE---PN 415
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 85/320 (26%)
Query: 76 IDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYML--------RAEVLL--- 120
I + LVF Q+ P+ F+Y+ + P A++ Y ML R + L
Sbjct: 58 IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 117
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVD------NYSYSNKFFESR---- 156
VH V K G S FV+ A++ N + F+ R
Sbjct: 118 VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 177
Query: 157 -----------------RVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
+R LFDE P + +WN MI AYA+ LA LF+++P
Sbjct: 178 AVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE 237
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG- 253
D+ SW MI+ Y + AL+ F + ++ G D VTM ++LSACA G LD+G+
Sbjct: 238 RDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRL 297
Query: 254 ---------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I +Y C S+ + VF+ +R+K++ WNSI LA+HG
Sbjct: 298 HSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHG 357
Query: 291 FAHEALGMFDRMTYENVRPN 310
E++ MF++M VRP+
Sbjct: 358 HVLESIDMFEKMLKGKVRPD 377
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT--WNTMIDAYAR 183
Q+ + G + +++ + S +R+ L D F N +ID YA+
Sbjct: 265 QMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAK 324
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ +F M D+ +W +++ + + E++D F K K D++T V
Sbjct: 325 CGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAV 384
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSITEALAIHGFA 292
L AC+H G +D GR FF L E N+ + + + L G
Sbjct: 385 LIACSHGGMVDKGR--------------EFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLL 430
Query: 293 HEALGMFDRMTYENVRPN 310
EA D M E PN
Sbjct: 431 KEAFEFIDTMKCE---PN 445
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 148/333 (44%), Gaps = 60/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF---IDYTILVFPQMQEPN 90
L+KC S+K L+ +A + T + F + ++FC+S H + Y VF Q+Q P
Sbjct: 12 LEKCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPT 71
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHG 125
V +Y+ AF A+ ++ ML++E+ +HG
Sbjct: 72 VCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHG 131
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL- 184
K G ++V +++ Y F +R +FDE+P +W+ MI YA++
Sbjct: 132 YSSKLGLVFDIYVGNSLMAMYC----VFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVG 187
Query: 185 ----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
A L F++ P D W MI+ Y QN F+E+L F + + D+ ++LS
Sbjct: 188 DVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILS 247
Query: 241 ACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLL 277
ACAHLGAL++G I + C +L + +F + ++++
Sbjct: 248 ACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVV 307
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
CWN++ +A+HG AL +F M V+P+
Sbjct: 308 CWNAMISGMAMHGDGKGALKLFYDMEKVGVKPD 340
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++D YA+ LA+ LF+ M D+ W MI+ + + + AL F +K G
Sbjct: 280 SLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKP 339
Query: 231 DQVTMATVLSACAHLG 246
D +T V +AC++ G
Sbjct: 340 DDITFIAVFTACSYSG 355
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 156/346 (45%), Gaps = 59/346 (17%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDY 78
+S+ I H + ++ C++++EL+ ++ ++ D L QF+ S + + + Y
Sbjct: 2 SSLRCIVKHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHY 61
Query: 79 TILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL-------------- 120
+ V Q P +F ++ A S P ++ FY +L + L
Sbjct: 62 SNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTS 121
Query: 121 ---------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
++VHG K GF VQ+ ++ Y Y+ R+F + E
Sbjct: 122 AQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLI--YMYAE--LGGLDACHRVFSSICEPDL 177
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
M+ A A++ ++ LF+KM D +W MI+ Y Q Q REAL FN ++
Sbjct: 178 VCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQRE 237
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
G ++V+M +VLSAC+HLGALD GR Y C ++ ++
Sbjct: 238 GVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKA 297
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF+ ++EKN+ W+S LA++G + L +F M ++V+PN
Sbjct: 298 MEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPN 343
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 112/213 (52%), Gaps = 32/213 (15%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR--- 183
+ +NG + + V AM+D Y + S +RRLFD+M E+ +W TMID YA+
Sbjct: 259 IERNGINVNLTVSNAMLDMYVKNG----SLEDARRLFDKMEEKDIFSWTTMIDGYAKRRD 314
Query: 184 --LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLS 240
A +F+ MP DI +W +I++Y Q+ + +EAL F++ + S T D+VT+ + LS
Sbjct: 315 FDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLS 374
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
ACA LGA+D+G I +Y C + ++L +F+ + +++
Sbjct: 375 ACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFV 434
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W+++ LA+HG A+ +F M VRPN
Sbjct: 435 WSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNA 467
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 135/307 (43%), Gaps = 47/307 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
+ +C+++K L+ ++ATI+++ + A + S S F +DY VF ++ +PN++
Sbjct: 38 IDQCTNLKHLKELHATILRSGLFFHPYNASKLFSVAALSSFSSLDYARKVFEEISQPNLY 97
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM-VDNYS 147
++ AF+S P+ ++ ++ ML + N F+ P ++ A V +
Sbjct: 98 TWNTLIRAFASSPEPIHSLLIFIRML--------YDSPDFPNKFTFPFVIKAAAGVASLP 149
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
+S + + L ++ N++I YA +L +F K+ D+ SW +
Sbjct: 150 FS-QAIHGMAIKASLGSDL-----FILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNS 203
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------G 253
MI + +AL+ F K + VTM VLSACA L+ GR G
Sbjct: 204 MIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNG 263
Query: 254 IQI-----------YCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
I + Y + SL + +F K+ EK++ W ++ + A A +FD
Sbjct: 264 INVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFD 323
Query: 301 RMTYENV 307
M +++
Sbjct: 324 AMPRQDI 330
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIRSWTTMIT-- 205
F S +R++F+E+ + TWNT+I A+A E L+F +M +D + T
Sbjct: 78 FSSLDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRM-LYDSPDFPNKFTFP 136
Query: 206 ------SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
+ + F +A+ K+ GSD + +++ A G LD
Sbjct: 137 FVIKAAAGVASLPFSQAIHGM--AIKASLGSDLFILNSLIHCYASCGDLD---------- 184
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF K+ EK+++ WNS+ + + G +AL +F M ENVRPN
Sbjct: 185 ---SAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPN 232
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y++ E+ +F + D+ W+ MI + + + R A+D F + +++
Sbjct: 406 SLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRP 465
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT +L AC+H G ++ GR
Sbjct: 466 NAVTFTNLLCACSHTGLVNEGR 487
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HGQ++K G+ S +FV + +VD Y+ + ++ R+ F+E+PE+ +NTMI
Sbjct: 160 IHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRI----FEEIPEKNIVVYNTMITGLL 215
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R AE LF+ MP D SWTT+IT +QN F+EA+D F + G DQ T +
Sbjct: 216 RCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGS 275
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+AC ALD G+ I Y CR++ + VF K+R KN
Sbjct: 276 VLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKN 335
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ +G++ EA+ +F M + P+
Sbjct: 336 VISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPD 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 89/172 (51%), Gaps = 28/172 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R +FD +P+ +WNT++ AY++L L +F+ MP D+ SW ++++ Y+ N
Sbjct: 59 ARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLI 118
Query: 214 REALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQ----------------- 255
E++ +N K G+ + +++T +T+L ++ G +DLGR I
Sbjct: 119 SESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSP 178
Query: 256 ---IYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+Y ++ + + +F ++ EKN++ +N++ L F EA +FD M
Sbjct: 179 LVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNM 230
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y + AE +F KM ++ SWT M+ Y QN EA+ F +++
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368
Query: 230 SDQVTMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLV 267
D T+ +V+S+CA+L +L+ G I +Y C SL + +
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQL 428
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F +++ ++ + W ++ A G A+E + +F+ M + P+G
Sbjct: 429 FHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 39 SIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVFVYHA- 96
++ E + ++A I++T+ + F+ + +C R + Y VF +M+ NV + A
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRN--VKYAEAVFRKMRHKNVISWTAM 342
Query: 97 ---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
+ + +A+ + M R E+ H + G V A + + +F
Sbjct: 343 LVGYGQNGYSEEAVRIFCDMQRNEI-----HPDDFTLG---SVISSCANLASLEEGAQFH 394
Query: 154 ESRRVSRRLFDEMPERKFATW-NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
S + F T N +I Y + L LF++M D SWT +++ Y
Sbjct: 395 GQALASGLIC-------FVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGY 447
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+Q + E + F G D VT VLSAC+ G ++ G
Sbjct: 448 AQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKG 491
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 162/346 (46%), Gaps = 58/346 (16%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
NS P S+ + I + L++ I ++ ++A +++ + D F+ + + C S+ H
Sbjct: 38 NSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHA 96
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------- 122
IDY +F PNV++Y A F S + L+AI Y ML +L
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 123 ------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
VH + K GFSS V+ +++ Y + ++RRV F+EMPE
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRV----FEEMPEDV 212
Query: 171 FATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
A+ MI +Y+ A +F+++ D WT MI + +N++ AL+AF +
Sbjct: 213 VAS-TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 271
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
++ T+ VLSAC+ LGAL++GR + Y C S+
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ VF ++++++++ +N++ L+++G + +A+ +F M +RP
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 377
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R A+ +F++M D+ ++ TMI+ S N + R+A++ F
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 376
Query: 230 SDQVTMATVLSACAHLGALDLG 251
VT VL+AC+H G +D G
Sbjct: 377 PTNVTFVGVLNACSHGGLVDFG 398
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 42/258 (16%)
Query: 81 LVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT 140
LV P P+ + F+S+ L+A A +L + VH V K G S +FV+
Sbjct: 117 LVLPNAPNPDEY---TFTSV---LKACAGLAQVLEGQ----KVHCFVTKYGCESNLFVRN 166
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAW 195
++VD Y ++++LFDEM R +WNT+I Y A ++F+ M
Sbjct: 167 SLVDLYFKVG----CNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEK 222
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGI 254
++ SW+TMI+ Y++N+++ +A++ F + + + G + VT+ +VLSACAHLGALDLG+ I
Sbjct: 223 NLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWI 282
Query: 255 QIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFA 292
+ R LG +L VF ++ E++++ W+ I LA++G+A
Sbjct: 283 HRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYA 342
Query: 293 HEALGMFDRMTYENVRPN 310
+EA F M + + PN
Sbjct: 343 NEAFNFFAEMIEDGLEPN 360
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N + D YA+ A+ +F++M D+ SW+ +I + EA + F + + G
Sbjct: 299 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 358
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ ++ +L+AC H G +D G
Sbjct: 359 PNDISFMGLLTACTHAGLVDKG 380
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 78/350 (22%)
Query: 34 LKKCSSIKELECVYATIVKTNANLD----CFLAKQFISFCT-SRFHFIDYTILVFPQMQE 88
++ C +I +L+ ++A I+ T+ NLD FL + + F S + Y +F +++
Sbjct: 5 IQHCKNINQLKQIHALIL-TSPNLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYIKK 63
Query: 89 PNVFVYH----AFSSLRHP-------LQAIAFYLYMLRAEV---LLT------------- 121
PN+ Y+ A++S + QA+ Y ML ++ LT
Sbjct: 64 PNLPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISPDCLTFPFLLKECTRNVA 123
Query: 122 -----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG K G S +FVQ +++ YS + +F + SR+LFDEM R +WN+
Sbjct: 124 IYGGRGIHGHAIKLGLYSDLFVQNSLISFYS-ACEFVSN---SRKLFDEMSNRDVVSWNS 179
Query: 177 MIDAYARLAEL-----LFNKMPA-WDIRSWTTMITSYSQNKQFREALDAFNKTK--KSGT 228
MI Y R +L LF KM ++ +W ++IT + Q + +EAL+ F++ + +
Sbjct: 180 MIIGYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDD 239
Query: 229 G------SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRS 260
G D++T+A+VLSACAHLGA+D G+ + Y C
Sbjct: 240 GINNKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGC 299
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L R+ VF ++ EK+ L W ++ A++GF EA MF+ M V+PN
Sbjct: 300 LQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGGVKPN 349
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y + L +F +M D +WT MI+ ++ N +EA D FN+ + G
Sbjct: 289 ALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGGVKP 348
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT +LSACAH G ++ GR
Sbjct: 349 NLVTFVGLLSACAHSGLVETGR 370
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 160/392 (40%), Gaps = 115/392 (29%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L KCS++ + ++A ++K N + D F+A + I+ + H + VF + PNV
Sbjct: 27 DLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLAS-AVNVFNHVPHPNVH 85
Query: 93 VY------HAFSSLRHPLQAIAF--------------YLYMLRAEV------LLTTVHGQ 126
+Y HA ++ L AF Y ++L+A L+ +H
Sbjct: 86 LYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAH 145
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNK-----------FFESRRV----------------- 158
V K GF +FV +++D+YS + R V
Sbjct: 146 VEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELE 205
Query: 159 -SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+ +LFDEMPER +WNTM+D YA+ E+ LF +MP +I SW+TM+ YS+
Sbjct: 206 GACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGD 265
Query: 213 F-------------------------------REALDAFNKTKKSGTGSDQVTMATVLSA 241
REA + + K +++G D + ++L+A
Sbjct: 266 MDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAA 325
Query: 242 CAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFK-LREKNLLC 278
CA G L LG+ I C L + VF + +K+++
Sbjct: 326 CAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVS 385
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ + A+HG +AL +F RM E P+
Sbjct: 386 WNSMIQGFAMHGHGEKALELFSRMVPEGFEPD 417
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N ID YA+ L +F+ M A D+ SW +MI ++ + +AL+ F++ G
Sbjct: 355 NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGF 414
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
D T +L AC H G ++ GR
Sbjct: 415 EPDTYTFVGLLCACTHAGLVNEGR 438
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 138/306 (45%), Gaps = 57/306 (18%)
Query: 58 DCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLY 112
D F A + ISFC S I + L+F + F+++ AF+ + P ++ Y Y
Sbjct: 19 DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 78
Query: 113 MLRAEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
ML L +H Q + G+ + FVQ ++ Y+ N
Sbjct: 79 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCN- 137
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITS 206
+RRLFD R TW +I+ YA+ +A LF++MP + SW+ MIT
Sbjct: 138 ---CMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITG 194
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC-------- 258
Y+Q FREAL+ FN + +G + + L+ACA LGALD GR I Y
Sbjct: 195 YAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLD 254
Query: 259 RSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
R LG +L+ VF ++ ++++ + S+ LA HG + A+ MF RM
Sbjct: 255 RILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQN 314
Query: 305 ENVRPN 310
E V PN
Sbjct: 315 EGVCPN 320
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ + +F++M D+ ++T++I+ + + A++ F + + G
Sbjct: 260 ALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCP 319
Query: 231 DQVTMATVLSACAHLGALDLG 251
++VT +LSAC+ +G ++ G
Sbjct: 320 NEVTFICLLSACSRVGLVEEG 340
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 154/314 (49%), Gaps = 49/314 (15%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQ 87
II + + KC+S+ +L+ ++A ++ T+ D F A + +SFC S I+Y I +F +Q
Sbjct: 51 IIMDMVDKCTSMTQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKLFKSIQ 110
Query: 88 EPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMV 143
+PN+F+++ A ++ +P QA+ FY+ MLR V N ++ P ++
Sbjct: 111 DPNIFMWNTIIRALANSSNPDQALFFYIQMLRLGVC---------PNKYTFPFLLKGCSF 161
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR 198
+ +++ + + N ++ Y+ ++L LF + P D+
Sbjct: 162 CSIQ------SCKQIHTHVLKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLS 215
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG------- 251
WTTMI+ Y+QN EAL F + G + T+A+VLS CA G+LDLG
Sbjct: 216 IWTTMISGYAQNFCANEALVLFERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFM 275
Query: 252 --RGIQIYCRSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEA 295
RG++I LG +L+ +F + EKN+ WN++ LA HG A EA
Sbjct: 276 IERGVEIGV-ILGTALVHMYAKNGKILVARKLFDSMTEKNVATWNAMLCGLASHGHAEEA 334
Query: 296 LGMFDRMTYENVRP 309
L +F ++ E++ P
Sbjct: 335 LSLFWKLEKEHIVP 348
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + + G V + TA+V Y+ + K V+R+LFD M E+ AT
Sbjct: 271 IHGFMIERGVEIGVILGTALVHMYAKNGKIL----VARKLFDSMTEKNVAT--------- 317
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
W M+ + + EAL F K +K T VLSAC
Sbjct: 318 -----------------WNAMLCGLASHGHAEEALSLFWKLEKEHIVPIDATFVGVLSAC 360
Query: 243 AHLGALDLGRGI 254
H G +D+GR I
Sbjct: 361 CHAGLIDVGRRI 372
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA---- 243
LF + +I W T+I + + + +AL + + + G ++ T +L C+
Sbjct: 105 LFKSIQDPNIFMWNTIIRALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGCSFCSI 164
Query: 244 ------HLGALDLG---------RGIQIYC--RSLGRSLLVFFKLREKNLLCWNSITEAL 286
H L G R +++Y L + +F + E++L W ++
Sbjct: 165 QSCKQIHTHVLKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSIWTTMISGY 224
Query: 287 AIHGFAHEALGMFDRMTYENVRPNG 311
A + A+EAL +F+RM E PNG
Sbjct: 225 AQNFCANEALVLFERMVAEGFEPNG 249
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 61/332 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQM-QEPNVF 92
L CS++K L +A ++ + D L FI +S F Y +F + PN+F
Sbjct: 18 LNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQ-SSSSLGFSLYAYSLFTSLTHPPNIF 76
Query: 93 VYH----AFSSLRHPLQAIAFY---------------LYMLRAEVLLTTV------HGQV 127
+Y+ A S P +I + + L+A + L+ H Q
Sbjct: 77 LYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQA 136
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP--ERKFATWNTMIDAYARL- 184
+ G S + V +++ YS S+ +R+LFD +P R A WN M+ +YA++
Sbjct: 137 IRFGLHSHLHVLVSLIRMYSSSHI-----SDARKLFDGIPLTARNVALWNAMLTSYAKIC 191
Query: 185 ----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
A+ LF+ MP ++ SWT +I+ Y+ + +A+ F + D++T+ VLS
Sbjct: 192 DMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLS 251
Query: 241 ACAHLGALDLGRGIQ--------------------IYCRS--LGRSLLVFFKLREKNLLC 278
ACA LGAL+LG I+ +Y +S + R+LL+F ++ K ++
Sbjct: 252 ACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVT 311
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ LA+HG +AL MF RM + V+PN
Sbjct: 312 WTTMIAGLALHGLGTQALEMFSRMERDRVKPN 343
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
R N +ID YA+ A L+F M I +WTTMI + + +AL+ F++
Sbjct: 275 HRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSR 334
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++ +++T VLSAC+H+G + L R
Sbjct: 335 MERDRVKPNEITFIAVLSACSHVGLVQLAR 364
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 154/340 (45%), Gaps = 62/340 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
I+ + K + L+ V + ++ + + FL + + FCT R + Y +F + P
Sbjct: 27 ISAAISKSRHLNHLKQVQSFLIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFP 86
Query: 90 NVFVYHAF-----SSLR-HPLQAIAFYLYMLRAE-----------VLLTT---------- 122
N +Y A SSL H A +F+ M+ VL +T
Sbjct: 87 NTHLYAAVLTGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTP 146
Query: 123 -VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH ++K+GF V VQTA++ +Y+ S ++R+LFDEM ER +W M+ Y
Sbjct: 147 LVHTHLFKSGFHLYVVVQTALLHSYASSVSHIT---LARQLFDEMSERNVVSWTAMLSGY 203
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTM 235
AR ++ LF +MP D+ SW ++ + +QN F EA+ F + ++VT+
Sbjct: 204 ARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCIRPNEVTL 263
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
VLSACA G L L +GI + C +L + VF +
Sbjct: 264 VCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSVFKMSSK 323
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYEN---VRPN 310
K+L WNS+ A+HG + EA+ +F+ M N ++P+
Sbjct: 324 KSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHDIKPD 363
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 27/135 (20%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +H ++ SS VFV ++VD Y E+ V F ++ WN+MI
Sbjct: 278 LAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSV----FKMSSKKSLTAWNSMI 333
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ +A + ++++ + K D +T +
Sbjct: 334 NCFAL-----------------------HGRSEEAIAVFEDMMKLNSHDIKPDHITFIGL 370
Query: 239 LSACAHLGALDLGRG 253
L+AC H G + GRG
Sbjct: 371 LNACTHGGLVSKGRG 385
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 60/340 (17%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH--FIDYTILVF 83
R + + + LKKC ++ +L+ ++A +++++ F Q +S + + F + L+F
Sbjct: 10 RSNTLNSLLKKCRALSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACLIF 69
Query: 84 PQMQEPNVFVYHAFSS---LRH-PLQAIAFYLYMLRAEVLLTT----------------- 122
+ N+F+Y++ L H P +AI YL ML +L
Sbjct: 70 QNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSS 129
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
VH V GF FV +A+++ YS + F+ +R LFD +P R W
Sbjct: 130 KLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLN---FD-MGTARTLFDRIPNRDVVLWTA 185
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
MID Y ++ A +LF MP + SW+ ++ +YS+ F+E L F + +++GT +
Sbjct: 186 MIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPN 245
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
+ + +VL+ACAHLGAL G + Y C + +L F
Sbjct: 246 ESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQ 305
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ K+ WN++ +A++G A ++L +F++M +P
Sbjct: 306 GIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQP 345
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
F +P D +W MI+ + N ++L+ FNK +GT + T VL+AC H
Sbjct: 304 FQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTH 359
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 62/338 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID-YTILVFPQMQE 88
+ ++L C ++ +++ ++ +++ + C++ + I T +D Y V +Q
Sbjct: 53 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQF 112
Query: 89 PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEV---------------------LLTTV 123
N F++ A ++ +AIA Y M + E+ L
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172
Query: 124 HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
H Q ++ GF V+V M+D Y +R++FDEMPER +W +I AYA
Sbjct: 173 HAQTFRLRGFCF-VYVGNTMIDMYVKCGSIV----CARKVFDEMPERDVISWTELIAAYA 227
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R+ + LF +P D+ +WT M+T ++QN + +EAL+ F++ +KSG +D+VT+A
Sbjct: 228 RVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 287
Query: 238 VLSACAHLGALDLG-RGIQIYCRS---------LGRSLL--------------VFFKLRE 273
+SACA LGA R +QI +S +G +L+ VF +
Sbjct: 288 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNN 347
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
KN+ ++S+ LA HG A EAL +F M T ++PN
Sbjct: 348 KNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPN 385
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 167 PERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
P + +ID Y++ + +F M ++ S+++MI + + + +EALD F+
Sbjct: 315 PSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFH 374
Query: 222 -KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWN 280
++ + VT L+AC+H G +D GR Q++ S+ F + E +
Sbjct: 375 YMVTQTAIKPNTVTFVGALTACSHSGLVDQGR--QVFA-----SMYQTFGV-EPTRDHYT 426
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + L G EAL + M+ E P+G
Sbjct: 427 CMVDLLGRAGRLQEALELIKTMSVE---PHG 454
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 155/365 (42%), Gaps = 90/365 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF--HFIDYTILVFPQMQEPNVF 92
++C S+++++ V+A +V D ++ I F +S + LVF ++ P+ F
Sbjct: 16 RRCRSLRQIKQVHALMVLRGFLSDPSALRELI-FASSVGVRGGTAHARLVFDRIPHPDRF 74
Query: 93 VYHAF-SSLRH---PLQAIAFYLYMLR---------------------------AEVLLT 121
+Y+ H P A++ Y M R A
Sbjct: 75 MYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGA 134
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF--------ESRR---------------- 157
VH V K G S FV+ A++ ++ E+R
Sbjct: 135 QVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRG 194
Query: 158 ---VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+R LFDE P + +WN MI AYA+L ++ LF+ P D+ SW MI+ Y +
Sbjct: 195 DIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR 254
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG---------------- 253
++A++ F + + G D VTM ++LSACA G +D GR
Sbjct: 255 CGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPST 314
Query: 254 ------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
I +Y C S+ +L VF+ +++KN+ WNSI LA+HG EA+ +F +M
Sbjct: 315 VLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQG 374
Query: 306 NVRPN 310
NV+P+
Sbjct: 375 NVKPD 379
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +F M ++ +W ++I + + EA+D F K +
Sbjct: 318 NALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVK 377
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D++T VL AC+H G +D G
Sbjct: 378 PDEITFVAVLVACSHGGMVDKG 399
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 57/327 (17%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTI--LVFPQMQEPNVFVY 94
C+++ + ++A I + N + ++ + F T+ H +T L+F Q+ PN F+Y
Sbjct: 21 CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLY 80
Query: 95 HAF------------------SSLRHPLQAIAF----YLYMLRAEVLLTTVHGQVWKNGF 132
A S L + + ++F +L+ L + +H + GF
Sbjct: 81 SALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFGF 140
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL----- 187
+ ++V ++ Y F +R++FDEMP R TW +I AYAR ++
Sbjct: 141 VNDLYVGNTIIHMYVK----FGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACE 196
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF +P D+ +WT+M+T YSQN ++AL F K +++G +D++T+ +SACA LG
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV 256
Query: 248 LD-------------LGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSIT 283
G G ++ C ++ + VF ++E N+ ++S+
Sbjct: 257 SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMI 316
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
A+HG A A+ +F M ++PN
Sbjct: 317 VGFAVHGRARSAIKLFYEMLENGIKPN 343
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y++ + +F M ++ S+++MI ++ + + R A+ F + ++G
Sbjct: 282 SALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIK 341
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ VT + +AC+H G ++ G+
Sbjct: 342 PNHVTFVGLFTACSHAGMVEQGQ 364
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 82/359 (22%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L C S+ + ++A ++K D F+A + + C S +DY +F P+VF
Sbjct: 12 LNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVF 71
Query: 93 VYHA-----------------FSSLRH----PLQAIAFYLYM-----LRAEVLLTTVHGQ 126
+++ F +R P + +F + LR+ + +H Q
Sbjct: 72 MHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQ 131
Query: 127 VWKNGFSSPVFVQTAMVDNYS------YSNKFFE---------------------SRRVS 159
+G + +FV T ++ Y ++ K F+ +
Sbjct: 132 ALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGG 191
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFR 214
R LFD MP R +WN M+ Y + EL +F +MP D SW+TMI ++ N F
Sbjct: 192 RELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFE 251
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
EA F + ++ G ++ ++ VLSACA GAL+ G+ + +
Sbjct: 252 EAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALL 311
Query: 258 -----CRSLGRSLLVFFK-LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ + LVF + + E+N++ W S+ ALA+HG EA+G+F +M +RP+
Sbjct: 312 DTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPD 370
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 122/302 (40%), Gaps = 68/302 (22%)
Query: 12 SFKKNSF--PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC 69
++NSF P S SF I A L+ +L C A + + +L F+ IS
Sbjct: 95 EMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHC-QALVHGLDTHL--FVGTTLISM- 150
Query: 70 TSRFHFIDYTILVFPQMQEPNVFVYHAF-------SSLRHPLQAIAFYLYMLRAEVLLTT 122
F+ + VF +M EPN ++A ++ + F L +R +
Sbjct: 151 YGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGREL--FDLMPVRNLMSWNV 208
Query: 123 VHGQVWKNG---FSSPVFVQTAMVDNYSYS--------NKFFES-----RRVSRR----- 161
+ K G + +F++ M D+ S+S N +FE R + R+
Sbjct: 209 MLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPN 268
Query: 162 ---------------------LFDEMPERKFATW-----NTMIDAYAR-----LAELLFN 190
+ E+ W N ++D Y++ +A+L+F
Sbjct: 269 ETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFE 328
Query: 191 K-MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+ M +I SWT+M+ + + + EA+ F+K ++SG D++ ++L AC+H G ++
Sbjct: 329 RIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVE 388
Query: 250 LG 251
G
Sbjct: 389 QG 390
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 57/327 (17%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFVYH 95
CS++ +L ++ I++ + D + Q I+F S + Y I +F + P+ F Y+
Sbjct: 54 CSTMPDLRQYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYN 113
Query: 96 AF--SSLRH--PLQAIAFYLYMLRAEV---------------------LLTTVHGQVWKN 130
+ L+H P +I Y +ML+ V L +H V K
Sbjct: 114 TIIKAYLQHLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKL 173
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF + V ++ Y+ F E+R V MPE+ F +W T+I Y++ +
Sbjct: 174 GFGAHVISLNNLIHMYARFQAFEEARCV----LYSMPEQNFISWTTLISGYSQWGLVDEA 229
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+F MP + SW MI +Y Q +F E+ F++ + G D+ AT+LSAC L
Sbjct: 230 FRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATMLSACTGL 289
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GAL+ G+ I Y C SL ++L VF L K + WN +
Sbjct: 290 GALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKCGSLEKALEVFKGLPHKGISSWNCMI 349
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
LA+HG A+ +F M E + P+
Sbjct: 350 GGLAMHGKGEAAIELFKEMEKEMLAPD 376
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+ K AT +ID Y + L +F +P I SW MI + + + A++ F +
Sbjct: 310 DSKLAT--AIIDMYCKCGSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIELFKE 367
Query: 223 TKKSGTGSDQVTMATVLSACAH 244
+K D++T +LSACAH
Sbjct: 368 MEKEMLAPDRITFVNLLSACAH 389
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 56/288 (19%)
Query: 75 FIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA-------------- 116
F+ Y +F +Q P +Y+ A SS + PL+A+ Y ML++
Sbjct: 115 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 174
Query: 117 ---EVLLT----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
E +T VH V K+GF ++ ++++ Y+ +++LF+ R
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDL----GAAKQLFNLCSAR 230
Query: 170 KFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
+WN MID Y + E+ +F++M D+ SW TMI Y+ + EAL F++ +
Sbjct: 231 DVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMR 290
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLG 262
G + T+ ++LSACAHLGALD G + Y C +
Sbjct: 291 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 350
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF + K++L WN+I +AIHG EA +F M V PN
Sbjct: 351 LATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPN 398
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LA +FN M + D+ +W T+I + + +EA F + K++G
Sbjct: 338 ALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP 397
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ +T +LSAC+H G +D G+ + + C S + E + + + + LA G
Sbjct: 398 NDITFVAILSACSHAGMVDEGQKL-LDCMSSSYGI-------EPKVEHYGCVIDLLARAG 449
Query: 291 FAHEALGMFDRMTYENVRPN 310
F EA+ + M E PN
Sbjct: 450 FLEEAMELIGTMPME---PN 466
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 70/346 (20%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
HI + +S+K L+ V+A +++ + D +L + + F + F +Y+ +F Q +
Sbjct: 11 HIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRF-SFNFGNTNYSHRIFHQTK 69
Query: 88 EPNVFVYHAFSSLRHPL-------QAIAFYLYMLRAEV---------------------L 119
EPN+F+ F+++ H L ++I Y M + + L
Sbjct: 70 EPNIFL---FNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKL 126
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+HG V K G S FV T++V Y F ++ + ++FD++PE+ A W +I
Sbjct: 127 GIKLHGLVVKAGCESDAFVNTSLVSLYGKCG-FIDN---AFKVFDDIPEKNVAAWTAIIS 182
Query: 180 AYA------------RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
Y R A +F+ M DI SW++MI Y+ N +EALD F K G
Sbjct: 183 GYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEG 242
Query: 228 TGSDQVTMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSL 265
D M VL ACA LGAL+LG I +Y C + +
Sbjct: 243 FRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAW 302
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF +R+K+++ WN+ LA+ G A G+F +M + P+G
Sbjct: 303 EVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDG 348
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ + +F M DI W I+ + + + A F + +KSG
Sbjct: 287 ALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEP 346
Query: 231 DQVTMATVLSACAHLGALDLGR 252
D T +L AC H G +D GR
Sbjct: 347 DGNTFVGLLCACTHAGLVDEGR 368
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 31/203 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V++ +VD + + + +V F M R T N MI AYA+ ++ +F+
Sbjct: 223 VYLGNTLVDYFGRRGQLQSAEKV----FFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFD 278
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P D+ SW++MI+ YSQ F +AL+ F + +++ D + +A+V+S+CAHLGALDL
Sbjct: 279 QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL 338
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + Y C S +L VF +++EK+ L WNSI LA
Sbjct: 339 GKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLAN 398
Query: 289 HGFAHEALGMFDRMTYENVRPNG 311
+GF E+L +F M E RPNG
Sbjct: 399 NGFEKESLNLFQAMLTEGFRPNG 421
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 77/273 (28%)
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFYL---------------YMLRAEVLLTT 122
VF Q++ P F+++ + P AIAFY ++L+A +
Sbjct: 43 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 102
Query: 123 V------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+ H + K G S +FV +++ Y+ +R V FDEM +
Sbjct: 103 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSV----FDEMVVK------- 151
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
D+ SW ++I YSQ +F++ L F + G +D+VTM
Sbjct: 152 -------------------DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMI 192
Query: 237 TVLSACAHLGALDLG----RGIQIYCRS----LGRSLL--------------VFFKLREK 274
V+SAC LG + R I+ YC LG +L+ VFF ++ +
Sbjct: 193 KVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR 252
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
N++ N++ A A A +FD++ +++
Sbjct: 253 NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 285
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 31/208 (14%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
N V++ ++D Y + + +V F +M ++ T N MI AYA+ L
Sbjct: 1070 NHIEVDVYLGNTLIDYYCRIGQLQSAEKV----FSQMKDKNTVTLNAMITAYAKGGNLVS 1125
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+F+++P D+ SW++MI +YSQ F ++L+ F + +++ D V +A+VLSACAH
Sbjct: 1126 AKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 1185
Query: 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
LGALDLG+ I Y C + +L VF + EK+ L WNSI
Sbjct: 1186 LGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSI 1245
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
LA +GF EAL +F M E RPN
Sbjct: 1246 ILGLANNGFEDEALDIFHSMLTEGPRPN 1273
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V + GF +V TA+++ Y S E+R+V FDEMP + +WN MI +A
Sbjct: 501 LHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKV----FDEMPVKNVVSWNVMITGFA 556
Query: 183 RLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
E LLF++MP ++ SWT +I Y++ + EAL G ++T+
Sbjct: 557 GWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLA 616
Query: 238 VLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFK-LREK 274
V+ A ++LG + +G + YC G SL VF + L +
Sbjct: 617 VIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRR 676
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL+ W SI A+HG + EAL +F M ++PN
Sbjct: 677 NLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 27/160 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I YA L +FN+M D+ SW ++I YSQ+ + +E L F +
Sbjct: 979 NSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQ 1038
Query: 230 SDQVTMATVLSACAHLG-----------------ALDLGRG---IQIYCR--SLGRSLLV 267
+D+VTM V+SAC HLG +D+ G I YCR L + V
Sbjct: 1039 ADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKV 1098
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
F ++++KN + N++ A A G A +FD++ +++
Sbjct: 1099 FSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDL 1138
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKM-PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N++ID YA++ + +F++M ++ SWT++I+ ++ + EAL+ F + +++G
Sbjct: 650 NSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGI 709
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+++T +V++AC+H G ++ G
Sbjct: 710 KPNRITFLSVINACSHGGLVEQG 732
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGAL 248
W T++ +Q+ ++A+ + K ++ G D +T VL ACA H +
Sbjct: 908 WNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVI 967
Query: 249 DLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
LG + I+ C +L + VF ++ K+++ WNS+ + H E L
Sbjct: 968 KLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLT 1027
Query: 298 MFDRMTYENVRPN 310
+F M E V+ +
Sbjct: 1028 LFKLMQAEEVQAD 1040
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID +A+ A +F M D SW ++I + N EALD F+ G
Sbjct: 1212 NSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPR 1271
Query: 230 SDQVTMATVLSACAHLGALDLG 251
++VT VL ACA+ ++ G
Sbjct: 1272 PNEVTFLGVLIACANRQLVEEG 1293
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 166/356 (46%), Gaps = 80/356 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVF 92
K +S++ L ++A ++++ D +++ + C + HF D+ + VF + PNVF
Sbjct: 41 KSITSLQYLTQLHALVLRSGHFQDHYVSGALLK-CYANPHFSNFDFALKVFSSIPNPNVF 99
Query: 93 VYHAF--SSLRHP--LQAIAFYLYML--------------------RAEVLLTTVHGQVW 128
+++ L + +AI FY M+ +A +HG V
Sbjct: 100 IWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------------SRRL 162
K+G S V +++A + Y+ + ++R++ ++ L
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F +MP + +WN MI+ A+ L LF++M D SW++M+ Y +++EAL
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--- 266
+ F + ++ T + +++VL+AC+++GA+D GR + Y + LG +LL
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339
Query: 267 -----------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF +++E+ + WN++ LAIHG A +AL +F ++ ++PNG
Sbjct: 340 AKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ L +F +M +I +W MI + + + +AL+ F+K ++
Sbjct: 334 ALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKP 393
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ +T+ VL+ACAH G +D +G++I+ +++ F+ + + L + + + L G
Sbjct: 394 NGITLVGVLTACAHAGFVD--KGLRIF-----QTMREFYGV-DPELEHYGCMVDLLGRSG 445
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA + + M ++PN
Sbjct: 446 LFSEAEDLINSMP---MKPN 462
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 67/365 (18%)
Query: 4 KYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCF-LA 62
K +++ I++ + PTS S +A+ + C +++ L+ ++A + N + LA
Sbjct: 165 KTLKSYISNKVMHMLPTSQS------LASMAEACLTMQALKLIHALAFRANLHHHALVLA 218
Query: 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-----------------FSSLR-HPL 104
K F S + Y +F Q+ +PN F Y+ F+ +R + +
Sbjct: 219 KIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCV 278
Query: 105 QAIAF-YLYMLRAE----------VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
F + ++L+ V +HG V K GF +FV A++ Y+
Sbjct: 279 DPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPA 338
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
+ +V F+EM +W+ ++ A+ R EL +F +MP D+ SWT M++ Y+
Sbjct: 339 AAHQV----FNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYA 394
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------- 257
Q K+ REAL+ F + + G D+V M +V+SAC LG L+ G + Y
Sbjct: 395 QAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVS 454
Query: 258 -----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C + + VF + K+L+ WNS+ A A HG A +A +F M Y
Sbjct: 455 LCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSG 514
Query: 307 VRPNG 311
+RP+G
Sbjct: 515 IRPDG 519
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ LA +FN M + +W +MI++ + + +A F SG
Sbjct: 457 NALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIR 516
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D VT +L+A H G +D G G+
Sbjct: 517 PDGVTFLALLTAYTHKGWVDDGYGL 541
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 32/223 (14%)
Query: 116 AEVLLT-TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+VLL VHG+V +G + V+ A+VD Y+ ES + +LFD M R +W
Sbjct: 159 GDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADM-ES---AWKLFDGMQVRSVVSW 214
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+++ RL + LF +MP D SWT MI Y Q +FREAL+ F + + S
Sbjct: 215 TSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVS 274
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
+D+ TM +V++ACA LGAL++G +++Y C S+ R+L V
Sbjct: 275 ADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDV 334
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + ++ W +I LA++G+ EA+ MF RM + P+
Sbjct: 335 FKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPD 377
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ + +F M D +WT +I + N EA++ F++
Sbjct: 316 NALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSET 375
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-----KNLLCWNSITE 284
D+VT VL+AC H G +D GR F +RE N++ + I +
Sbjct: 376 PDEVTFIGVLTACTHAGLVDKGREF-------------FLSMRETYNIAPNVVHYGCIID 422
Query: 285 ALAIHGFAHEALGMFDRM 302
G EAL D+M
Sbjct: 423 LFGRAGKITEALDAIDQM 440
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
W +I+ +++ ++F EA +F ++G VT +VLSAC G D+ G+Q++ R
Sbjct: 112 WNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGK-GTGDVLLGMQVHGR 170
Query: 260 SLGRSLL------------------------VFFKLREKNLLCWNSITEALAIHGFAHEA 295
+G +L +F ++ ++++ W S+ L G EA
Sbjct: 171 VVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEA 230
Query: 296 LGMFDRM 302
+F RM
Sbjct: 231 RDLFGRM 237
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 155/347 (44%), Gaps = 58/347 (16%)
Query: 19 PTSVSFIRIHIIA-NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFI 76
P S+S + H + L CS++ EL+ ++ I++ + D + I FC S+ +
Sbjct: 11 PPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDL 70
Query: 77 DYTILVFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLY-----------------MLRAE 117
+Y + VF ++ P+ ++Y+ LR L ++Y ++RA
Sbjct: 71 NYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRAC 130
Query: 118 VL------LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
+ +H V K GF + F ++ + Y N F+S +RR+FD MP+R
Sbjct: 131 CIDYAIEEGKQIHAHVLKFGFGADGFSLNNLI--HMYVN--FQSLEQARRVFDNMPQRDV 186
Query: 172 ATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+W ++I Y++ A +F MP + SW MI +Y Q+ + EA F++ +
Sbjct: 187 VSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLE 246
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
D+ A++LSAC LGAL+ G+ I Y C L ++
Sbjct: 247 NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKA 306
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF +L +K + WN + LA+HG A+ +F M E V P+G
Sbjct: 307 SEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+ K AT T+ID Y + L +FN++P I SW MI + + + A++ F +
Sbjct: 286 DSKLAT--TVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKE 343
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++ D +T VLSACAH G ++ G+
Sbjct: 344 MEREMVAPDGITFVNVLSACAHSGLVEEGK 373
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 62/334 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L C S ++++ V+A ++ T L + + +S F I Y +VF +P++F+
Sbjct: 8 LSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFL 67
Query: 94 YH------AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHG 125
Y+ AFS+ + + ++R E L+ V
Sbjct: 68 YNTIIKVLAFSTTSSA-DSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRV 126
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
K G + +FV A++ Y + ++R+V FD P R +WN M+ YARL
Sbjct: 127 HAIKLGLENNLFVTNALIGMYVNLDFVVDARKV----FDWSPNRDMYSWNIMLSGYARLG 182
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ LF++MP D+ SWTTMI+ Q F EALD F+ G ++ T+A+ L+
Sbjct: 183 KMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLA 242
Query: 241 ACAHLGALDLGRGIQIYC---------RSLGRSLLVFFKLRE---------------KNL 276
ACA+L ALD GR + +Y R L + ++ K E + +
Sbjct: 243 ACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKV 302
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A+HG + EA+ +F++M E V PN
Sbjct: 303 WPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPN 336
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD--IRSWTTMITSYSQNKQFREAL 217
+M ER A +ID YA+ EL LFN P + W MI ++ + + +EA+
Sbjct: 266 QMNERLLAG---LIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAI 322
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ F + K ++VT +L+AC+H ++ GR
Sbjct: 323 EVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGR 357
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 155/346 (44%), Gaps = 72/346 (20%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVF 83
R H + L C +++ L ++A ++KT + + + I F HF + Y I VF
Sbjct: 1 RNHPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVF 60
Query: 84 PQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+QEPN+ ++ HA SS P+ A+ Y+ M+ ++ +
Sbjct: 61 DSIQEPNLLIWNTMFRGHALSS--DPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKA 118
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG V K G ++V T+++ Y + + ++R+V FD+ R ++
Sbjct: 119 FREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKV----FDQSSHRDVVSYTA 174
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I YA A+ +F+++P D+ SW +I+ Y++ ++EAL+ F + K+ D
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPD 234
Query: 232 QVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFF 269
+ TM TVLSACA +++LGR + I C + + +F
Sbjct: 235 ESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFE 294
Query: 270 KLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
L K+++ WN++ I G+ H EAL +F M PN
Sbjct: 295 GLSYKDVISWNTL-----IGGYTHMNLYKEALLLFQEMLRSGESPN 335
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + E+ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 274 NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
++VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 334 PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQ 393
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ A+HG A+ A +F RM + + P+
Sbjct: 394 QVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPD 438
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ M + SW MI ++ + + A D F++ +K G
Sbjct: 378 SLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEP 437
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 438 DDITFVGLLSACSHSGMLDLGRHIF-------RSMTEDYKITPK-LEHYGCMIDLLGHSG 489
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M + P+G
Sbjct: 490 LFKEAEEMINSMEMD---PDG 507
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G + V+ A+VD Y+ ++ + FD E+ +W +MI AYA
Sbjct: 211 VHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAI----FDRTQEKNVVSWTSMISAYA 266
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +A +F++MP ++ SW +MI+ Y + Q+REALD FNK + S D+ T+ +
Sbjct: 267 QHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVS 326
Query: 238 VLSACAHLGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKN 275
+L+AC+ LG L +G+ G+ +Y C + +L +F ++ KN
Sbjct: 327 ILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKN 386
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ WN I ALA+HG EA+ +F+ M + P+
Sbjct: 387 LVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 421
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 130/318 (40%), Gaps = 82/318 (25%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVFVYH--- 95
++ L+ ++A I+ + + ISFC + Y +F Q+ +PN F+Y+
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 96 -AFSSLRHPLQAIAFYLYM---------------LRA--------EVLLTTVHGQVWKNG 131
+S+ P+ A+ + M L+A E +L VHG K G
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVL--VHGLAIKLG 118
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNK 191
S VFVQ A++ Y +R+LFD++ ++ +WN+MI YA +
Sbjct: 119 IGSLVFVQNALIAVYVVCGLI----HCARKLFDDITDKTLVSWNSMIGGYAHMG------ 168
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
++EA F K ++ G D T +LS C+ LDLG
Sbjct: 169 --------------------NWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLG 208
Query: 252 R---------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R G++I C +L + +F + +EKN++ W S+ A A H
Sbjct: 209 RYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQH 268
Query: 290 GFAHEALGMFDRMTYENV 307
G A +FD+M +NV
Sbjct: 269 GSIEVARQIFDQMPGKNV 286
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+N++ID YA+ + +F +MP ++ SW +I + + + EA+ F + + GT
Sbjct: 359 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 418
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
D++T+ +LSAC+H G +D+G
Sbjct: 419 LPDEITLTGLLSACSHSGLVDMG 441
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA- 243
A+ +F+++P + + ++I YS + +A+ F + SG ++ T+ VL AC
Sbjct: 41 AQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGC 100
Query: 244 ----------HLGALDLGRG-----------IQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
H A+ LG G + + C + + +F + +K L+ WNS+
Sbjct: 101 KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSM 160
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPNG 311
A G EA +F +M + P+G
Sbjct: 161 IGGYAHMGNWKEAFLLFRKMREWGMEPDG 189
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 58/335 (17%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
+ + L K + + L+ + A + F A + I FCT + Y L+F +
Sbjct: 9 VLDTLSKSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSNLTYARLIFDHIPSL 68
Query: 90 NVFVY------HAFSSLRHPLQAIAFYLYMLRAE-------------------VLLTTVH 124
N ++ +A HP A++ + +MLR++ ++H
Sbjct: 69 NTHLFTAMITAYAAHPATHP-SALSLFRHMLRSQPPRPNHFIFPHALKTCPESCAAESLH 127
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
Q+ K+GF VQTA+VD+YS K ++++FDEM +R ++ M+ +AR+
Sbjct: 128 AQIVKSGFHEYPVVQTALVDSYS---KVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARV 184
Query: 185 AEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
++ +F +M D+ SW +I +QN F + ++ F + + VT+ L
Sbjct: 185 GDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCAL 244
Query: 240 SACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL 277
SAC H+G L LGR I Y C SLG++ VF EK L
Sbjct: 245 SACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLT 304
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTY--ENVRPN 310
WNS+ A+HG + A+ +F++M VRP+
Sbjct: 305 SWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPD 339
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V+KNG + FV A+VD Y ++R+V F+ PE+
Sbjct: 259 IHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKV----FEMNPEK------------- 301
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATVLS 240
+ SW +MI ++ + Q A+ F + + G G D+VT +L+
Sbjct: 302 -------------GLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLN 348
Query: 241 ACAHLGALDLG 251
AC H G ++ G
Sbjct: 349 ACTHGGLVEKG 359
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 31/203 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V++ +VD + + + +V F M R T N MI AYA+ ++ +F+
Sbjct: 688 VYLGNTLVDYFGRRGQLQSAEKV----FFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFD 743
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P D+ SW++MI+ YSQ F +AL+ F + +++ D + +A+V+S+CAHLGALDL
Sbjct: 744 QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL 803
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + Y C S +L VF +++EK+ L WNSI LA
Sbjct: 804 GKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLAN 863
Query: 289 HGFAHEALGMFDRMTYENVRPNG 311
+GF E+L +F M E RPNG
Sbjct: 864 NGFEKESLNLFQAMLTEGFRPNG 886
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + GF +V TA+V+ Y +SR F+EMP + +WN +I +A
Sbjct: 111 LHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMA----FEEMPVKNAVSWNVVITGFA 166
Query: 183 RLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
E LLF +MP ++ SW+ MI Y++ + EA+ F + G ++T+
Sbjct: 167 GWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLA 226
Query: 238 VLSACAHLGALDLGRGIQIYCR----------------------SLGRSLLVFFK-LREK 274
V+ A +++G + +G + YC S+ SL VF + L +
Sbjct: 227 VVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRR 286
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL+ W SI A+HG + +A+ +F M +RPN
Sbjct: 287 NLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPN 322
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 77/273 (28%)
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFY---------------LYMLRAEVLLTT 122
VF Q++ P F+++ + P AIAFY ++L+A +
Sbjct: 508 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 567
Query: 123 V------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+ H + K G S +FV +++ Y+ +R V FDEM +
Sbjct: 568 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSV----FDEMVVK------- 616
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
D+ SW ++I YSQ +F++ L F + G +D+VTM
Sbjct: 617 -------------------DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMI 657
Query: 237 TVLSACAHLGALDLG----RGIQIYCRS----LGRSLL--------------VFFKLREK 274
V+SAC LG + R I+ YC LG +L+ VFF ++ +
Sbjct: 658 KVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR 717
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
N++ N++ A A A +FD++ +++
Sbjct: 718 NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 750
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 31/196 (15%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M++ Y+ K E++R LFDEMPER +WN+M+ + + + LF++MP D
Sbjct: 298 MINGYAIVGKIDEAKR----LFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRD 353
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW +M+ Y+Q + EAL F++ + G + T+ ++LSACAHLGALD G +
Sbjct: 354 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 413
Query: 257 Y----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
Y C + + VF + K++L WN+I +AIHG E
Sbjct: 414 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKE 473
Query: 295 ALGMFDRMTYENVRPN 310
A +F M V PN
Sbjct: 474 AQQLFKEMKEAGVEPN 489
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LA +FN M + D+ +W T+I + + +EA F + K++G
Sbjct: 429 ALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP 488
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ +T +LSAC+H G +D G+ + + C S + E + + + + LA G
Sbjct: 489 NDITFVAILSACSHAGMVDEGQKL-LDCMSSSYGI-------EPKVEHYGCVIDLLARAG 540
Query: 291 FAHEALGMFDRMTYENVRPN 310
F EA+ + M E PN
Sbjct: 541 FLEEAMELIGTMPME---PN 557
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 72/258 (27%)
Query: 75 FIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA-------------- 116
F+ Y +F +Q P +Y+ A SS + PL+A+ Y ML++
Sbjct: 144 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 203
Query: 117 ---EVLLT----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
E +T VH V K+GF ++ ++++ Y+ +++
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQ------------ 251
Query: 170 KFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
LFN A D+ SW MI Y ++ + A F++
Sbjct: 252 ------------------LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VC 289
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D ++ T+++ A +G +D + + F ++ E+NL+ WNS+
Sbjct: 290 RDVISWNTMINGYAIVGKIDEAKRL-------------FDEMPERNLVSWNSMLAGFVKC 336
Query: 290 GFAHEALGMFDRMTYENV 307
G +A G+F M +V
Sbjct: 337 GNVEDAFGLFSEMPCRDV 354
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 62/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+KCS+ K+L+ V+ I++ D L ++ I +S + + Y LVF Q+ P+VF
Sbjct: 32 LQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQL-SSSYGKMKYATLVFDQLNAPDVFT 90
Query: 94 YH----AFSSLRHPLQAIAFYLYML---------------------RAEVLLTTVHGQVW 128
++ AF+ P A+ + ML A L H
Sbjct: 91 WNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAI 150
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRV--SRRLFDEMPERKFATWNTMIDAYARLAE 186
K GF ++VQ M+ N +F+ V R++FD+M R W T+I +
Sbjct: 151 KMGFWGDLYVQNTMM------NLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGK 204
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLS 240
L LF +MP+ ++ SWT MI Y ++KQ EA + F + ++ ++ T+ +++
Sbjct: 205 LDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVR 264
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
AC +G+L LGR + + C L + VF ++ + L
Sbjct: 265 ACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTLAT 324
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
WN++ +L +HG+ EAL +FD M N P+
Sbjct: 325 WNTMITSLGVHGYRDEALSLFDEMEKANEVPDA 357
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH KNGF F+ TA++D YS ++R V FD M R ATWN
Sbjct: 278 VHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTV----FDMMQVRTLATWN------- 326
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
TMITS + EAL F++ +K+ D +T VLSAC
Sbjct: 327 -------------------TMITSLGVHGYRDEALSLFDEMEKANEVPDAITFVGVLSAC 367
Query: 243 AHLGALDLGR 252
++ L+L +
Sbjct: 368 VYMNDLELAQ 377
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 155/334 (46%), Gaps = 67/334 (20%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVF 92
L KC SI+ + ++A I+KT + F + I F SR I Y I +F ++EPN+F
Sbjct: 36 LSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLF 95
Query: 93 VYHA----FSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQV 127
++++ S P A+ F++ M+ + V LL + +H V
Sbjct: 96 IWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHV 155
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA----- 182
K GF S VF+ T++++ Y+ S + ++ V FD+ R ++ +I YA
Sbjct: 156 LKLGFVSDVFIHTSLINMYAQSGEMNNAQLV----FDQSNFRDAISFTALIAGYALWGYM 211
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A LF++MP D+ SW MI Y+Q + +EAL F +K+ ++ T+ +VLSAC
Sbjct: 212 DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSAC 271
Query: 243 AHLGALDLG---------RG-----------IQIY--CRSLGRSLLVFFKLREKNLLCWN 280
A ALDLG RG I +Y C L + +F + E++++ WN
Sbjct: 272 AQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWN 331
Query: 281 SITEALAIHGFAH-----EALGMFDRMTYENVRP 309
+ I G+ H EAL +F M V P
Sbjct: 332 -----VMIGGYTHMCSYKEALALFREMLASGVEP 360
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +L LF+ M D+ SW MI Y+ ++EAL F + SG
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
++T ++L +CAHLGA+DLG+ I Y C ++ + V
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ K+L WN++ LA+HG A +A +F +M+ + + PN
Sbjct: 420 FDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 178 IDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
ID YA+ ++ F+ M + SW MI + + Q +A + F+K G ++
Sbjct: 404 IDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNE 463
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
+T +LSAC H G +DLG+ Q + S++ +K+ K+ + + + L G
Sbjct: 464 ITFVGILSACKHAGLVDLGQ--QFF-----SSMVQDYKISPKSQH-YGCMIDLLGRAGLF 515
Query: 293 HEALGMFDRMTYENVRPNG 311
EA + M V+P+G
Sbjct: 516 EEAESLLQNM---EVKPDG 531
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 163/365 (44%), Gaps = 67/365 (18%)
Query: 4 KYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNA-NLDCFLA 62
K +++ I++ + PTS S +A+ + C +++ L+ ++A + N N LA
Sbjct: 224 KTLKSYISNKVMHMLPTSQS------LASMAEACLAMQALKLIHARAFRANLHNHALVLA 277
Query: 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-----------------FSSLR-HPL 104
K F S + Y +F Q+ +PN F Y+ F+ +R + +
Sbjct: 278 KIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCV 337
Query: 105 QAIAF-YLYMLRAE----------VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
F + ++L+ V +HG V K GF +FV A++ Y+
Sbjct: 338 DPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPA 397
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
+ +V F+EM +W+ ++ A+ R EL +F++MP D+ SWT M++ Y+
Sbjct: 398 AAHQV----FNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYA 453
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------- 257
Q K+ REAL+ F + + G D+V M V+SAC LG L+ G + Y
Sbjct: 454 QAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVS 513
Query: 258 -----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C + + VF + K+L+ WNS+ A A HG A +A +F M
Sbjct: 514 LCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSG 573
Query: 307 VRPNG 311
+RP+G
Sbjct: 574 IRPDG 578
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ LA +FN M + +W +MI++ + + +A F SG
Sbjct: 516 NALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIR 575
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D VT +L+A H G +D G G+
Sbjct: 576 PDGVTFLALLTAYTHKGWVDDGYGL 600
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L KC ++ +L+ +A ++K+ + F+ + ++FC SR + + +F +Q P +
Sbjct: 12 LHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTIC 71
Query: 93 VYH-----------------AFSSL-RHPLQAIAFYL-YMLRAEVLLT------TVHGQV 127
+++ FS++ R+ + + L Y+L+A +T ++H
Sbjct: 72 IFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACT 131
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G + FV +++ Y + F++ R +R++FDEMPE +W MI YA + ++
Sbjct: 132 IKLGSAVNEFVGNSLLVMY----RSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDV 187
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+ D W MI+ Y QN F+E L F + + D+ + T+LSAC
Sbjct: 188 DTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSAC 247
Query: 243 AHLGALDLGRGIQIYCRSLGRSLL----------------------VFFKLREKNLLCWN 280
AH+GALD G I Y LG L +F ++ +++ +CWN
Sbjct: 248 AHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWN 307
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +A+ G A+ +F M ++P+
Sbjct: 308 AMISGMAMDGDGEGAIKLFMEMEKAGIKPD 337
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ LA+ LFN+M D W MI+ + + A+ F + +K+G D
Sbjct: 278 LIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPD 337
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCR 259
+T V AC++ G +D GI+I+ R
Sbjct: 338 NITFIAVWXACSNSGMVD--EGIRIWNR 363
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 57/330 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L KC ++ +L+ +A ++K+ + F+ + ++FC SR + + +F +Q P +
Sbjct: 12 LHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTIC 71
Query: 93 VYH-----------------AFSSL-RHPLQAIAFYL-YMLRAEVLLT------TVHGQV 127
+++ FS++ R+ + + L Y+L+A +T ++H
Sbjct: 72 IFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACT 131
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G + FV +++ Y + F++ R +R++FDEMPE +W MI YA + ++
Sbjct: 132 IKLGSAVNEFVGNSLLVMY----RSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDV 187
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+ D W MI+ Y QN F+E L F + + D+ + T+LSAC
Sbjct: 188 DTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSAC 247
Query: 243 AHLGALDLGRGIQIYCRSLGRSLL----------------------VFFKLREKNLLCWN 280
AH+GALD G I Y LG L +F ++ +++ +CWN
Sbjct: 248 AHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWN 307
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +A+ G A+ +F M ++P+
Sbjct: 308 AMISGMAMDGDGEGAIKLFMEMEKAGIKPD 337
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ LA+ LFN+M D W MI+ + + A+ F + +K+G D
Sbjct: 278 LIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPD 337
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCR 259
+T VL+AC++ G +D GI+I+ R
Sbjct: 338 NITFIAVLAACSNSGMVD--EGIRIWNR 363
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 38/261 (14%)
Query: 84 PQMQEPNVFVY-----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
PQ Q +Y H+F +H + L + L +H K+GF +F
Sbjct: 61 PQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFA 120
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP 193
TA++D Y+ ++R+LFD+MP R TWN M+ +AR ++ LF MP
Sbjct: 121 ATALLDMYTKVGTL----ELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMP 176
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSACAHLGALDLGR 252
+ ++ SWTTMI+ YS++K++ EAL F + ++ G + VT+A++ A A+LGAL++G+
Sbjct: 177 SRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQ 236
Query: 253 GIQIYCRSLG--RSLLVFFKLRE---------------------KNLLCWNSITEALAIH 289
++ Y R G ++L V + E +NL WNS+ LA+H
Sbjct: 237 RVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVH 296
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G + L ++D+M E P+
Sbjct: 297 GECCKTLKLYDQMLGEGTSPD 317
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-D 196
V+ Y+ N FF++ VS N +++ YA+ ++ +FN++ + +
Sbjct: 238 VEAYARKNGFFKNLYVS---------------NAVLEMYAKCGKIDVAWKVFNEIGSLRN 282
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW +MI + + + + L +++ GT D VT +L AC H G ++ GR I
Sbjct: 283 LCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHI-- 340
Query: 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+S+ S + KL + + + L G EA + RM
Sbjct: 341 -FKSMTTSFNIIPKLEH-----YGCMVDLLGRAGQLREAYEVIQRM 380
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 31/196 (15%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
+++ Y+ K E++R LFDEMPER +WN+M+ + + + LF++MP D
Sbjct: 103 IINGYAIVGKIDEAKR----LFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRD 158
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW +M+ Y+Q + EAL F++ + G + T+ ++LSACAHLGALD G +
Sbjct: 159 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 218
Query: 257 Y----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
Y C + + VF + K++L WN+I +AIHG E
Sbjct: 219 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKE 278
Query: 295 ALGMFDRMTYENVRPN 310
A +F M +V PN
Sbjct: 279 AQQLFKEMKEASVEPN 294
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LA +FN M + D+ +W T+I + + +EA F + K++
Sbjct: 234 ALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEP 293
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ +T +LSAC+H G +D G+ + + C S + E + ++ + + LA G
Sbjct: 294 NDITFVAMLSACSHAGMVDEGQKL-LDCMSSSYGI-------EPKVEHYDCVIDLLARAG 345
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA+ + M E PN
Sbjct: 346 LLEEAMELIGTMPME---PN 362
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 31/223 (13%)
Query: 115 RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
R +L VHG+V +G + V+ A+VD Y+ + +V FD M R +W
Sbjct: 137 RDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKV----FDGMQVRSVVSW 192
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+++ ARL ++ LF++MP D SWT MI Y +FREAL+ F + + S
Sbjct: 193 TSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVS 252
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
+D+ TM +V++ACA LGAL++G +++Y C S+ R+L V
Sbjct: 253 ADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDV 312
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + ++ W +I LA++G+ EA+ MF RM + P+
Sbjct: 313 FKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPD 355
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
+W +I+ +++ +F E+ +F ++G VT +VLSAC G D+ G+Q++
Sbjct: 89 AWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQVHG 147
Query: 259 RSLGRSLL------------------------VFFKLREKNLLCWNSITEALAIHGFAHE 294
R +G +L VF ++ ++++ W S+ LA G E
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207
Query: 295 ALGMFDRM 302
A +FDRM
Sbjct: 208 ARDLFDRM 215
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ + +F M D +WT +I + N EA++ F++ +
Sbjct: 294 NALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSET 353
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D+VT VL+AC H G +D GR + S++ + + N++ + I + L
Sbjct: 354 PDEVTFIGVLTACTHAGLVDKGREFFL-------SMIEAYNI-APNVVHYGCIIDLLGRA 405
Query: 290 GFAHEALGMFDRM 302
G EAL D+M
Sbjct: 406 GKITEALDTIDQM 418
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 27/162 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NT+ID Y RL L LF+ MP D+ SWT+MIT YSQ QF +A+ F + +
Sbjct: 164 NTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 223
Query: 230 SDQVTMATVLSACAHLGALDLG---------RGIQ-----------IYCRS--LGRSLLV 267
D+VT+A+VLSACAHLG LD+G G+Q +YC+ + ++L V
Sbjct: 224 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 283
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
F ++++K+ + W S+ LA++GFA+ AL +F +M E V+P
Sbjct: 284 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQP 325
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 98/242 (40%), Gaps = 52/242 (21%)
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+F+ A SS P + + A + +++H K GF S +FV A++ Y+
Sbjct: 14 LFIIVALSSTIAPAALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCG 73
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210
+ ++++FD M +R +WN T+I YSQ
Sbjct: 74 QL----GFAQKMFDGMLDRDLVSWN--------------------------TLICGYSQY 103
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LG 262
+++E L F+ + +D VTM ++ AC+HLG + + Y + LG
Sbjct: 104 NKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLG 163
Query: 263 RSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
+L+ +F + +++++ W S+ + +A+ +F M V+
Sbjct: 164 NTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 223
Query: 309 PN 310
P+
Sbjct: 224 PD 225
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + + +F++M D SWT++I+ + N ALD F++ + G
Sbjct: 265 NSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQ 324
Query: 230 SDQVTMATVLSACAHLGALDLG 251
T +L ACAH G ++ G
Sbjct: 325 PTHGTFVGILLACAHAGLVNKG 346
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 33/220 (15%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +H Q +++GF S F TA++ Y+ +RR+FDEM R WN MI
Sbjct: 101 LRLLHSQFFRSGFESDSFCCTALITAYAKLGALC----CARRVFDEMSNRDVPVWNAMIT 156
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQV 233
Y R ++ LF+ MP ++ SWTT+I+ +SQN + EAL F K + +
Sbjct: 157 GYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHI 216
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG---------RSLLVFFKL------------- 271
T+ +VL ACA+LG L++GR ++ Y R G +L ++ K
Sbjct: 217 TLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEI 276
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++NL+ WNS+ +LA HG EAL ++ +M E RP+
Sbjct: 277 GNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPD 316
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+ G +NGF ++V+ A ++ YS V++RLFDE+ ++
Sbjct: 237 LEGYARENGFFDNIYVRNATLEMYSKCGMI----DVAKRLFDEIGNQR------------ 280
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ SW +MI S + + + EAL+ + + + G D VT +L AC
Sbjct: 281 -------------NLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLAC 327
Query: 243 AHLGALDLGR 252
H G + G+
Sbjct: 328 VHGGMVLKGK 337
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 117/273 (42%), Gaps = 85/273 (31%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYS----------------------------------- 147
+HGQ K GF + FVQTA+V+ Y
Sbjct: 72 LHGQTIKTGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASNAQ 131
Query: 148 --YSNKFFES---------------------RRVSRRLFDEMPERKFATWNTMIDAYARL 184
Y++ F S ++R +FD M R F +WN+MI AY R
Sbjct: 132 MDYASNLFNSMPLKDISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNSMISAYIRA 191
Query: 185 AEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
++ LF +MP + +W TMIT Q++ F LD F + K + D +T+ +VL
Sbjct: 192 GDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVL 251
Query: 240 SACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL 277
S C HLG+L G I IY C S+ + L VF K + K++
Sbjct: 252 STCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIY 311
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
CWN++ ALA+HG + AL +F +M +++P+
Sbjct: 312 CWNALISALALHGHGYAALKVFGKMRKNHIQPD 344
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ + +F K DI W +I++ + + AL F K +K+ D
Sbjct: 285 LIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPD 344
Query: 232 QVTMATVLSACAHLGALDLG 251
+T +++AC+H G + G
Sbjct: 345 DITFIGIINACSHSGLVQEG 364
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 165/369 (44%), Gaps = 90/369 (24%)
Query: 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLA----KQFISFCTSRFHFIDYTILV 82
+H++ Q +S+ L+ +A I++T D ++A K + + T+R+ + ++ V
Sbjct: 36 LHLLNTQCT--TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRV 93
Query: 83 FPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYMLRAE----------VLLT------- 121
F +++PNVF+++ + P +AI Y M+ A VL
Sbjct: 94 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVV 153
Query: 122 ----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------- 158
VH + K+G + ++ + Y+ + E+RR+
Sbjct: 154 AEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 213
Query: 159 ---------SRRLFDEMPERKF-ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTM 203
+R LF+ MP+R +TWN MI ++R +A F++M D SW+ M
Sbjct: 214 YLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAM 273
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--- 260
I Y Q F EAL+ F++ +K + + +VLSACA+LGALD GR I Y +
Sbjct: 274 IDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 333
Query: 261 -----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
LG SL+ VF K+ K + WN++ LA+HG A +A+ +F +
Sbjct: 334 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSK 393
Query: 302 MTYENVRPN 310
M ++ PN
Sbjct: 394 M---DINPN 399
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 54/326 (16%)
Query: 34 LKKCSS---IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+S +K + ++A +K + D + + + +D + VF M E N
Sbjct: 101 LKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVD-SRKVFDYMPERN 159
Query: 91 VFVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP---------- 135
++A + + F +R V + ++G +
Sbjct: 160 AVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPS 219
Query: 136 ----VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
V T MVD Y+ + + +R +F+ MP+R F W++MI Y + +
Sbjct: 220 ELRNVVTWTVMVDGYARNAEM----EAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEAR 275
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F+++P ++ +W ++I+ Y+QN EAL+AF K + G D+VT+A+VLSAC+ LG
Sbjct: 276 SIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLG 335
Query: 247 ALDLG---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITE 284
LD G +GI++ C L + L+F + +N CWNS+
Sbjct: 336 LLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMIS 395
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
AIHG + EAL F RM + P+
Sbjct: 396 GFAIHGQSKEALEFFGRMEDSHEGPD 421
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ A L+F M + W +MI+ ++ + Q +EAL+ F + + S G
Sbjct: 360 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 419
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D++T +VLSACAH G ++ G++I+ R L K + + + L
Sbjct: 420 PDEITFLSVLSACAHGGFVNA--GLEIFSRMEKYGLTTGIKH-------YGCLIDLLGRA 470
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G EA + RM V+PN
Sbjct: 471 GRIKEAYDLIKRMP---VKPN 488
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 66/328 (20%)
Query: 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF-SSL 100
EL+ ++A +VK + + FL + + C +Y L+F ++ +PN F+Y+A +
Sbjct: 3 ELKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGE-TEYANLLFKRVADPNAFLYNAMIRAY 61
Query: 101 RHP---LQAIAFYLYMLRAE--------------------------VLLTTVHGQVWKNG 131
+H + AI + ML L VHG +K G
Sbjct: 62 KHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFG 121
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
S ++ ++V+ Y + ++ RV F+EM ER +WNT+I + RL ++
Sbjct: 122 PKSNTVIENSLVEMYVKCDSLDDAHRV----FEEMTERDAVSWNTLISGHVRLGQMRRAR 177
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F ++ I SWT +++ Y++ AL+ F + + D++++ +VL ACA LG
Sbjct: 178 AIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLG 237
Query: 247 ALDLGRGIQIY------------CRSL------------GRSLLVFFKLREKNLLCWNSI 282
AL+LG+ I IY C +L GR L F K+ E++++ W+++
Sbjct: 238 ALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRL--FHKMNERDVISWSTM 295
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
LA HG A EA+ +F M V PN
Sbjct: 296 IVGLANHGRAREAIELFQEMQKAKVEPN 323
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R N +I+ YA+ + LF+KM D+ SW+TMI + + + REA++ F +
Sbjct: 256 RDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEM 315
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
+K+ + +T +LSACAH G L+ G G Y S+ R + E + + +
Sbjct: 316 QKAKVEPNIITFVGLLSACAHAGLLNEGLG---YFESMERDDNI-----EPGVEHYGCLV 367
Query: 284 EALAIHGFAHEALGMFDRM 302
L + G +AL + +M
Sbjct: 368 NLLGLSGRLDQALELIKKM 386
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 163/385 (42%), Gaps = 103/385 (26%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVF 83
IR+ + ++L++ SS+KE+E I K+ F+ + ISF + S + Y +F
Sbjct: 4 IRVPDLLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIF 63
Query: 84 PQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLR-----------------AEVLL-- 120
N FV + A++ P++AI Y +M R A VL
Sbjct: 64 EDTTMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCN 123
Query: 121 ---------------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165
+H ++++ G F+Q ++V Y YS F ++RR+FDE
Sbjct: 124 EGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLV--YLYSQCGFLD--LARRVFDE 179
Query: 166 MPERKFATWNTMIDAYARL------------------------------------AELLF 189
M E+ +WN MI AY ++ A+ +F
Sbjct: 180 MTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVF 239
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+MP D SW +MI Y Q K + AL F + + + + +T+ +VL ACA GAL+
Sbjct: 240 QEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALE 299
Query: 250 LGRGIQI----------------------YCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+GR I + C L + VF +L+ K++ CWN++ +LA
Sbjct: 300 IGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLA 359
Query: 288 IHGFAHEALGMFD--RMTYENVRPN 310
+HG+ EAL +F M+ + RPN
Sbjct: 360 VHGYCEEALRLFSTMEMSVDGARPN 384
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 157 RVSRRLFDEMPERKFATW----NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
+ R++ + +R++ N ++D YA+ L +F+++ I W MI S
Sbjct: 299 EIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSL 358
Query: 208 SQNKQFREALDAFNKTKKSGTGS--DQVTMATVLSACAHLGALDLGR 252
+ + EAL F+ + S G+ ++VT VL AC+H G +D GR
Sbjct: 359 AVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGR 405
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 165/356 (46%), Gaps = 80/356 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVF 92
K +S++ L ++ ++++ D +++ + C + HF D+ + VF + PNVF
Sbjct: 41 KSITSLQYLTQLHGLVLRSGHFQDHYVSGALLK-CYANPHFSNFDFALKVFSSIPNPNVF 99
Query: 93 VYHAF--SSLRHP--LQAIAFYLYML--------------------RAEVLLTTVHGQVW 128
+++ L + +AI FY M+ +A +HG V
Sbjct: 100 IWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------------SRRL 162
K+G S V +++A + Y+ + ++R++ ++ L
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F +MP + +WN MI+ A+ L LF++M D SW++M+ Y +++EAL
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--- 266
+ F + ++ T + +++VL+AC+++GA+D GR + Y + LG +LL
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339
Query: 267 -----------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF +++E+ + WN++ LAIHG A +AL +F ++ ++PNG
Sbjct: 340 AKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ L +F +M +I +W MI + + + +AL+ F+K ++
Sbjct: 334 ALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKP 393
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ +T+ VL+ACAH G +D +G++I+ +++ F+ + + L + + + L G
Sbjct: 394 NGITLVGVLTACAHAGFVD--KGLRIF-----QTMREFYGV-DPELEHYGCMVDLLGRSG 445
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA + + M ++PN
Sbjct: 446 LFSEAEDLINSMP---MKPN 462
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 36/221 (16%)
Query: 121 TTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H +K+GF+ + V V TA++D Y+ K +R V FD+M R +WNTMID
Sbjct: 110 AALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLV----FDQMGVRNLVSWNTMID 165
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y + ++ LF+K+P ++ SWT +I + + + + EAL+ F + + +G D VT
Sbjct: 166 GYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVT 225
Query: 235 MATVLSACAHLGALDLG--------------------RGIQIY----CRSLGRSLLVFFK 270
+ ++SACA+LGAL LG I +Y C L R VF
Sbjct: 226 VIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQ--VFDG 283
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ ++NL+ WNSI A++G A +AL F M E + PNG
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNG 324
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 26/135 (19%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH--------LGAL-- 248
SWT+ I+ + +N F +A F + ++ + +T+ T+LSACAH GA
Sbjct: 54 SWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALH 113
Query: 249 -----------DLGRG---IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
D+ G I +Y C L + LVF ++ +NL+ WN++ + +G
Sbjct: 114 THAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDV 173
Query: 293 HEALGMFDRMTYENV 307
+AL +FD++ +NV
Sbjct: 174 DDALKLFDKLPVKNV 188
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID YAR LA +F+ M ++ SW ++I ++ N +AL F KK G
Sbjct: 262 NSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLE 321
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
+ V+ + L+AC+H G +D G I
Sbjct: 322 PNGVSYTSALTACSHAGLIDEGLKI 346
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 67/367 (18%)
Query: 9 IITSFKKNSFPTSV----SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQ 64
I+ ++N+ S S +R I + LK C S + L ++A IV + + ++
Sbjct: 5 IVPILRENATAISAIGRSSRVRQQFIFSVLKSCVSFRNLAKIHAQIVVSGFSQKNYILNH 64
Query: 65 FISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV-- 118
+S S F + VF + P+ V++ + + ++I + M A V
Sbjct: 65 LLSLYIS-FGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA 123
Query: 119 -------LLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKF--FESRR 157
LL+ +HG+V NG+ S ++V+T +++ Y+ F+ +R
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+R LFDEMP+ WN+++ Y R + +F++MP ++R+WT M+ ++QN Q
Sbjct: 184 -ARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQ 242
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR------------S 260
+ AL F++ +++G DQV + LSACA LG L LG+ I Y S
Sbjct: 243 CKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVS 302
Query: 261 LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM---T 303
L +L+ VF ++ ++N + W+SI A G EA+ +F M
Sbjct: 303 LNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSG 362
Query: 304 YENVRPN 310
VRP+
Sbjct: 363 QNEVRPD 369
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 19/144 (13%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I YA LA +F ++P + SW+++IT +++ EA+ F SG
Sbjct: 305 NALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQN 364
Query: 230 S---DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
D++T L+AC+H G + GI+++ +S+ ++ V ++ + + + L
Sbjct: 365 EVRPDEITFIGALTACSHAGLIS--DGIRLF-QSMHKTFGVIPQIEH-----YGCMVDLL 416
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
+ G EAL + + M ++PN
Sbjct: 417 SRAGLLTEALSLIESMP---MKPN 437
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 62/303 (20%)
Query: 64 QFISFC--TSRFHFIDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYML- 114
+ + FC T FH + Y I VF +QEPN + HA SS P+ A+ Y+YM+
Sbjct: 14 KLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSS--DPISALNLYVYMIS 71
Query: 115 --------------------RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+A +H Q+ K G + + V T+++ Y+ N E
Sbjct: 72 LGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYA-QNGIVE 130
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
+ ++FD R ++ MI YA A+ +F+++P D+ SW MI+ Y++
Sbjct: 131 D---AHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAE 187
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
+++EAL+ FN+ K D+ TMATVLS C H G ++LGR I +
Sbjct: 188 IGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKL 247
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C + R+ +F L+ K+++ WN++ A EAL +F M
Sbjct: 248 VNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE 307
Query: 308 RPN 310
PN
Sbjct: 308 TPN 310
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ E+ LF + D+ SW T+I Y+ +EAL F + K G
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C ++ +
Sbjct: 309 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAAN 368
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L N++ A+HG A A + RM + + P+
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPD 413
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ + +F+ + + S MI ++ + + A D ++ KK G
Sbjct: 353 SLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEP 412
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G DLGR I +S+ + +++ E L + + + L G
Sbjct: 413 DDITFVGLLSACSHAGLSDLGRKIF-------KSMTLDYRI-EPKLEHYGCMIDLLGRSG 464
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA + + MT E P+G
Sbjct: 465 LFKEAEELINSMTME---PDG 482
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 52/264 (19%)
Query: 94 YHAFSSLRHPLQAIAFYL---------------YMLRAEVLLTTV------HGQVWKNGF 132
+ +S P Q+ FY+ ++++A L ++ HG V ++GF
Sbjct: 511 FKGYSGSESPGQSFHFYIQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHGF 570
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL----- 187
+ V+VQ ++V+ YS R + +F M + +W +MI Y + ++
Sbjct: 571 ENDVYVQNSLVNMYSNLGDI----RAASYIFQTMSQLDVVSWTSMIAGYNKSGDVESARK 626
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF+KMP ++ +W+TMI+ Y++N F +A++ +N + G +++ M +V+S+CAHLGA
Sbjct: 627 LFDKMPEKNLVTWSTMISGYAKNNCFNKAIELYNVLQSEGVQANETVMVSVISSCAHLGA 686
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L+LG Y C S+ +++ VF +L EK+ L W ++
Sbjct: 687 LELGEKAHDYVVRNKITVNLILGTALVDMYARCGSIDKAVQVFDELGEKDALSWTALIAG 746
Query: 286 LAIHGFAHEALGMFDRMTYENVRP 309
A+HG A +AL F M + P
Sbjct: 747 FAMHGHAEKALQYFSEMIRTGLTP 770
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YAR + +F+++ D SWT +I ++ + +AL F++ ++G
Sbjct: 712 LVDMYARCGSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPR 771
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY 257
+T VLSAC+H G ++ RG++I+
Sbjct: 772 DITFTAVLSACSHRGLVE--RGMKIF 795
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 148/327 (45%), Gaps = 58/327 (17%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA- 96
SS+ + ++ VK+ D F+A I C +D VF ++E +V +++
Sbjct: 145 SSLSLGQSLHGMAVKSAVGSDVFVANSLI-HCYFSCGDLDSACKVFTTIKEKDVVSWNSM 203
Query: 97 ---FSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGF 132
F P +A+ + M +V + V + +N
Sbjct: 204 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRV 263
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAEL 187
+ + + AM+D Y+ +++R LFD M E+ TW TM+D YA A
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKR----LFDAMEEKDNVTWTTMLDGYAISEDYEAARE 319
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLG 246
+ N MP DI +W +I++Y QN + EAL F++ + + +Q+T+ + LSACA +G
Sbjct: 320 VLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVG 379
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL+LGR I Y C L +S VF + ++++ W+++
Sbjct: 380 ALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIG 439
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPNG 311
LA+HG +EA+ MF +M NV+PNG
Sbjct: 440 GLAMHGCGNEAVDMFYKMQEANVKPNG 466
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 140/328 (42%), Gaps = 47/328 (14%)
Query: 12 SFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT- 70
+F + PT+ + HI + +++C S+++L+ + +++T D + A + +
Sbjct: 17 NFSNPNQPTTNNERSRHI--SLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL 74
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
S F ++Y VF ++ +PN F ++ A++S P+ +I +L M+ Q
Sbjct: 75 SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVS--------ESQ 126
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ N ++ P ++ A + + V + ++ F N++I Y +
Sbjct: 127 CYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV----FVA-NSLIHCYFSCGD 181
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L +F + D+ SW +MI + Q +AL+ F K + + VTM VLSA
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA + L+ GR + Y C S+ + +F + EK+ + W
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENV 307
++ + AI A + + M +++
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDI 329
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 171 FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
F + +I Y++ +L +FN + D+ W+ MI + + EA+D F K ++
Sbjct: 400 FHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 226 SGTGSDQVTMATVLSACAHLGALD 249
+ + VT V AC+H G +D
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVD 483
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 148/329 (44%), Gaps = 54/329 (16%)
Query: 29 IIANQLKKCSS---IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85
+I LK C S + ++ ++A +K +++D F+ ++ ++ + VF
Sbjct: 53 VIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVA-AYAKCGVVCDARKVFDL 111
Query: 86 MQEPNVFVYHAF--SSLRHPLQA---IAFYLYMLRAEVLLTTVHGQVWKNGFS------- 133
M E NV ++A LR+ +AF + V + + G +NG +
Sbjct: 112 MPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFF 171
Query: 134 -------SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-- 184
V + T MVD Y+ + ++R V F+ MPER + W++M+ Y +
Sbjct: 172 DKVPYELKDVVIWTVMVDGYAKKGEMEDAREV----FELMPERNYFVWSSMVCGYCKKGD 227
Query: 185 ---AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
AE +F ++P ++ W +MI Y QN +AL+AF + G D+ T+ +VLSA
Sbjct: 228 VMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSA 287
Query: 242 CAHLGALDLG---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCW 279
CA LG LD G +GI + C L + LVF E+N+ CW
Sbjct: 288 CAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCW 347
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVR 308
N++ A++G +E L DRM N+R
Sbjct: 348 NAMIAGFAVNGQCNEVLEYLDRMQESNIR 376
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 29/214 (13%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+ ++H + K G VF+ TA+V Y+ ++R+V FD MPER TWN MI
Sbjct: 70 VKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKV----FDLMPERNVVTWNAMIG 125
Query: 180 AY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y A+ A L F +MP SW+ MI +++N A F+K D V
Sbjct: 126 GYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYEL--KDVVI 183
Query: 235 MATVLSACAHLGALDLGRGI----------------QIYCR--SLGRSLLVFFKLREKNL 276
++ A G ++ R + YC+ + + +F ++ +NL
Sbjct: 184 WTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNL 243
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ +G +AL F M + P+
Sbjct: 244 EIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPD 277
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ A L+F ++ W MI ++ N Q E L+ ++ ++S D
Sbjct: 319 LIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLD 378
Query: 232 QVTMATVLSACAHLGAL 248
VT TVLSACAH G +
Sbjct: 379 AVTFITVLSACAHGGLM 395
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V T MVD Y+ + + +R +F+ MP+R F W++MI Y + + +F+
Sbjct: 95 VVTWTVMVDGYARNAEM----EAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFD 150
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P ++ +W ++I+ Y+QN EAL+AF K + G D+VT+A+VLSAC+ LG LD
Sbjct: 151 RIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDA 210
Query: 251 G---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G +GI++ C L + L+F + +N CWNS+ AI
Sbjct: 211 GKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAI 270
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG + EAL F RM + P+
Sbjct: 271 HGQSKEALEFFGRMEDSHEGPD 292
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNK 191
+ T++V Y+ +SR+V FD MPER TWN MI Y ++ A LLF K
Sbjct: 1 MIGTSLVCMYAKCGNVVDSRKV----FDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEK 56
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
M +W MI ++++ A F+ + VT ++ A ++
Sbjct: 57 MSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELR--NVVTWTVMVDGYARNAEMEAA 114
Query: 252 RG----------------IQIYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
R I YC+ ++ + +F ++ +NL+ WNS+ A +GF+
Sbjct: 115 REVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSE 174
Query: 294 EALGMFDRMTYENVRPN 310
EAL F +M E P+
Sbjct: 175 EALEAFGKMQAEGFEPD 191
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ A L+F M + W +MI+ ++ + Q +EAL+ F + + S G
Sbjct: 231 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 290
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D++T +VLSACAH G ++ G++I+ R L K + + + L
Sbjct: 291 PDEITFLSVLSACAHGGFVNA--GLEIFSRMEKYGLTTGIKH-------YGCLIDLLGRA 341
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G EA + RM V+PN
Sbjct: 342 GRIKEAYDLIKRMP---VKPN 359
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 55/245 (22%)
Query: 121 TTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNK-------FFESRR--------------- 157
++H + K+GF++ +FV+TA+V+ Y+ + + F E+ R
Sbjct: 59 ASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVT 118
Query: 158 -----VSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSY 207
+RR+FD M ER +WNTMI YA LA +FN M D SW++M+++Y
Sbjct: 119 RGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAY 178
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQI-- 256
++ ++ ++AL+ + + + + D TM +VLSAC+ +GAL +G G+++
Sbjct: 179 TKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDV 238
Query: 257 -----------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C + S+ VF + K++L W+S+ LA HGF H+AL +F RM E
Sbjct: 239 KLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSE 298
Query: 306 NVRPN 310
++PN
Sbjct: 299 GLQPN 303
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ ++ +F+ MP D+ +W++MI + + +AL F++ G
Sbjct: 243 ALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQP 302
Query: 231 DQVTMATVLSACAHLGALDLGR 252
++VT VL +C HLG + G+
Sbjct: 303 NEVTFIGVLISCTHLGLVSDGK 324
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 32/218 (14%)
Query: 122 TVHGQVWKNGFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++H V K G + V V TA+VD Y+ K +++R +FD++ + +WNTMID
Sbjct: 117 SIHAYVRKLGLDTCNVMVGTALVDMYAKCGKV----QLARLIFDDLKVKNSVSWNTMIDG 172
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y R E LF++MP D SWT I + + F +AL+ F + + S D VT+
Sbjct: 173 YMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTI 232
Query: 236 ATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLRE 273
VLSACA+LGAL LG I Y +G SL+ VF K+ +
Sbjct: 233 IAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHKMLK 292
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ L+ WNSI A +GFA EAL F M E +P+G
Sbjct: 293 RTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDG 330
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y+R LA +F+KM + SW ++I ++ N EAL+ F +K G
Sbjct: 268 NSLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFK 327
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D V+ L+AC+H G +D G
Sbjct: 328 PDGVSFTGALTACSHAGMVDEG 349
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 165/369 (44%), Gaps = 90/369 (24%)
Query: 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLA----KQFISFCTSRFHFIDYTILV 82
+H++ Q +S+ L+ +A I++T D ++A K + + T+R+ + ++ V
Sbjct: 37 LHLLNTQCT--TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRV 94
Query: 83 FPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYMLRAE----------VLLT------- 121
F +++PNVF+++ + P +AI Y M+ A VL
Sbjct: 95 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVV 154
Query: 122 ----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------- 158
VH + K+G + ++ + Y+ + E+RR+
Sbjct: 155 AEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 214
Query: 159 ---------SRRLFDEMPERK-FATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTM 203
+R LF+ MP+R +TWN MI ++R +A F++M D SW+ M
Sbjct: 215 YLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAM 274
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--- 260
I Y Q F EAL+ F++ +K + + +VLSACA+LGALD GR I Y +
Sbjct: 275 IDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 334
Query: 261 -----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
LG SL+ VF K+ K + WN++ LA+HG A +A+ +F +
Sbjct: 335 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSK 394
Query: 302 MTYENVRPN 310
M ++ PN
Sbjct: 395 M---DIYPN 400
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 155/353 (43%), Gaps = 87/353 (24%)
Query: 12 SFKKNSFPTSV------SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQF 65
SF K S TSV R ++A+ KC+S+ +L+ ++A ++ + D + A +
Sbjct: 8 SFTKLSILTSVLHPPPPPPPRFSLLAD---KCTSMHQLKQIHAQMIVSARIHDNYAASRL 64
Query: 66 ISFCT-SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVL- 119
+SFC S + Y + +F QEPN F+++ A +S +P +A+ Y+ M R +V+
Sbjct: 65 LSFCALSESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIP 124
Query: 120 --------------------LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159
VH V K G + V +V YS S R +
Sbjct: 125 GKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDV----RNA 180
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
RR+FDE+ ER + W TTMI+ Y+QN EAL+
Sbjct: 181 RRVFDEVSERSLSIW--------------------------TTMISGYAQNYCSNEALEL 214
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL----- 266
F++ G + T+A+VLSACA G LDLG I ++ LG +L+
Sbjct: 215 FDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYAK 274
Query: 267 ---------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F + E+N WN++ LA+HG A EAL F ++ E + PN
Sbjct: 275 NGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPN 327
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LFN + W T+I +++ + EAL + ++ + T +L AC++ +
Sbjct: 82 LFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQS 141
Query: 248 LDLGRGIQIYCRSLGRSL----------------------LVFFKLREKNLLCWNSITEA 285
L + + G L VF ++ E++L W ++
Sbjct: 142 LQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISG 201
Query: 286 LAIHGFAHEALGMFDRMTYENVRPNG 311
A + ++EAL +FD+M E + PNG
Sbjct: 202 YAQNYCSNEALELFDQMIVEGLEPNG 227
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K+GF +F TA++D Y+ ++R+LFDEMP R WN M+ A
Sbjct: 69 LHTHFIKSGFEPDLFAATALLDMYAKVGAL----ELARKLFDEMPVRGVPRWNAMMAGLA 124
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
R ++ LF MP+ ++ WTTMI+ YS NKQ+ +AL F ++ G + VT+
Sbjct: 125 RFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLV 184
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG---------RSLLVFFKLRE-------------- 273
++L ACA+L AL++G+ ++ Y R G L ++ K +
Sbjct: 185 SILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSL 244
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL WNS+ LA+HG +AL ++D+M E P+
Sbjct: 245 RNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPD 281
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-D 196
V+ Y+ N FF++ S N +++ Y + ++ +FN++ + +
Sbjct: 202 VEAYARKNGFFKNXYAS---------------NAVLEMYVKCGKIDAAWRVFNEIGSLRN 246
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
+ SW +M+ + + + +AL+ +++ GT D VT +L AC G + GR I
Sbjct: 247 LCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHI 304
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 159/392 (40%), Gaps = 115/392 (29%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L KC+++ + ++A ++K N + D F+A + I+ + H + VF + PNV
Sbjct: 27 DLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLAS-AVNVFNHVPHPNVH 85
Query: 93 VY------HAFSSLRHPLQAIAF--------------YLYMLRA------EVLLTTVHGQ 126
+Y HA +S L AF Y ++L+A L+ +H
Sbjct: 86 LYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAH 145
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNK-----------FFESRRV----------------- 158
V K GF +FV +++D+YS E R V
Sbjct: 146 VEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQ 205
Query: 159 -SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+ +LFDEMP+R +WNTM+D YA+ E+ LF +MP +I SW+TM+ YS+
Sbjct: 206 GACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGD 265
Query: 213 F-------------------------------REALDAFNKTKKSGTGSDQVTMATVLSA 241
REA + + K +++G D + ++L+A
Sbjct: 266 MDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAA 325
Query: 242 CAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFK-LREKNLLC 278
CA G L LG+ I C L + VF + +K+++
Sbjct: 326 CAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVS 385
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ + A+HG +AL +F M E P+
Sbjct: 386 WNSMIQGFAMHGHGEKALELFSWMVQEGFEPD 417
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 175 NTMIDAYARLA------ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N ID YA+ ++ M D+ SW +MI ++ + +AL+ F+ + G
Sbjct: 355 NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGF 414
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
D T +L AC H G ++ GR
Sbjct: 415 EPDTYTFVGLLCACTHAGLVNEGR 438
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 67/345 (19%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLD-----CFLAKQFISFCT-----SRFHFIDY 78
II +K+C +I +L ++A + TN L L K + T S + Y
Sbjct: 18 IIIKLIKQCKTISQLHQLHAYTI-TNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHY 76
Query: 79 TILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEVLLTT------------ 122
+F +Q P+ F Y+ + L P+ A+ F+ M R V L +
Sbjct: 77 AKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQ 136
Query: 123 ---------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+H QV K GF S ++V +++ Y S+ ++ +V FDE P+R +
Sbjct: 137 LGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKV----FDESPQRDVVS 192
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+N +ID + + ++ LF+ MP D SW T+I ++ EA++ F+
Sbjct: 193 YNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEI 252
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
D V + + LSACA LG L+ G+ I Y C + +L
Sbjct: 253 RPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALK 312
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+F +KNL WN++ LA+HG+ L F RM V+P+G
Sbjct: 313 IFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDG 357
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 159/360 (44%), Gaps = 70/360 (19%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC 69
+ SF S P + H L C +++ L+ +++ I+KT + F + I FC
Sbjct: 13 VLSFSDPSPP--YKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFC 70
Query: 70 TSRFHF-IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYML---------- 114
H + Y + +F ++ PN +++ SS P A+ +Y++M+
Sbjct: 71 AVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYT 130
Query: 115 -----------RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
R VH V K G FV T++++ Y+ + + +R V F
Sbjct: 131 FPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLV----F 186
Query: 164 DEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
D+ R ++ +I YA A LF+++P D+ SW MI+ Y+Q+ + EA+
Sbjct: 187 DKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMA 246
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLG-ALDLG---------RGIQ------------- 255
F + +++ + TM +VLSACA G +L LG RG+
Sbjct: 247 FFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMY 306
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
+ C L + +F K+++KN++ WN + I G+ H EALG+F RM N+ PN
Sbjct: 307 VKCGDLEEASNLFEKIQDKNVVSWN-----VMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + +L LF K+ ++ SW MI Y+ ++EAL F + +S
Sbjct: 300 NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNID 359
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VT ++L ACA+LGALDLG+ + Y C L +
Sbjct: 360 PNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAK 419
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F + K+L WN++ A+HG ALG+F RMT E P+
Sbjct: 420 RIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPD 464
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A W ++ID YA+ +L +F+ M + +W MI+ ++ + AL F++
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSE 459
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D +T VL+AC H G L LGR
Sbjct: 460 GFVPDDITFVGVLTACKHAGLLSLGR 485
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 150/338 (44%), Gaps = 65/338 (19%)
Query: 35 KKCSSIKELECVYA-TIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+ C+S+ L+ ++A +++ + LAK S + Y +F Q+ PN F
Sbjct: 3 EACNSMSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFF 62
Query: 94 Y-----------------HAFSSLRH----PLQAIAFYLYMLRAEVLLT----------- 121
Y H + +R P + +L R+ V +
Sbjct: 63 YNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVEC 122
Query: 122 -TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+HG V K GFSS +FV+ A++ Y+ V+ R+FDE +W+ ++ A
Sbjct: 123 DEIHGAVLKLGFSSHLFVRNALIHLYAARGNPV----VAWRVFDETVGVDVVSWSGLVLA 178
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ R EL +F++MP D+ SWTTM+++YSQ K REAL+ + G D+VT+
Sbjct: 179 HVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTL 238
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
+V+SAC +LG L +G + Y C + R+ VF +
Sbjct: 239 VSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSR 298
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
K+L+ WNS+ A A + +A G+F RM V P+G
Sbjct: 299 KSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDG 336
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +FN M + +W +MI++ + N+ +A F++ G
Sbjct: 274 NALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVA 333
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT VL+A AH+G +D G
Sbjct: 334 PDGVTFLAVLTAYAHVGLVDEG 355
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 145/332 (43%), Gaps = 61/332 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LKKCS+ K+L+ V+ I++ D L ++ I S + + Y LVF Q+ P+VF
Sbjct: 31 LKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPS-YGKMKYATLVFDQLNAPDVFT 89
Query: 94 YH----AFSSLRHPLQAIAFYLYML---------------------RAEVLLTTVHGQVW 128
++ A++ P A + ML A + H
Sbjct: 90 WNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHALAI 149
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR--RLFDEMPERKFATWNTMIDAYARLAE 186
K GF ++VQ M+ N +F+ V +FD+M R W T+I + +
Sbjct: 150 KMGFWGDLYVQNTMM------NLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGFVACGK 203
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L LF +MP+ ++ SWT +I Y ++KQ EA D F + + ++ T+ +++ A
Sbjct: 204 LDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRA 263
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C +G+L LGR + + C +L + VF ++ + L W
Sbjct: 264 CTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATW 323
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
N++ +L +HG+ EAL +F+ M N P+
Sbjct: 324 NTMITSLGVHGYRDEALSIFEEMEKANEVPDA 355
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH KNGF F+ TA++D YS ++R V FD M R ATWN
Sbjct: 276 VHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTV----FDMMQMRTLATWN------- 324
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
TMITS + EAL F + +K+ D +T VLSAC
Sbjct: 325 -------------------TMITSLGVHGYRDEALSIFEEMEKANEVPDAITFVGVLSAC 365
Query: 243 AHLGALDLGR 252
++ L+L +
Sbjct: 366 VYMNDLELAQ 375
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 57/284 (20%)
Query: 81 LVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
L+F + P+ ++Y+ +++ PL A+ + +MLR T
Sbjct: 43 LLFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALA 102
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+H Q K G VFV+ +++ Y SN +S +RR+FD M R A+W
Sbjct: 103 HLPKGQELHCQALKFGLGGHVFVENSLIHLYG-SNSGMDS---ARRVFDGMGYRDIASWT 158
Query: 176 TMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++ YA + A +F++MP + S++ MI +Y + +FREALD F +
Sbjct: 159 TLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEP 218
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLV 267
+ +VL ACA+LGALD+GR + Y C S+ +LLV
Sbjct: 219 SDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLV 278
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F +EK++ W ++ LA+HG + + F++M V+PNG
Sbjct: 279 FEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNG 322
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A L+F + WT M++ + + + ++AF K SG + VT +LS C+H
Sbjct: 275 ALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSH 334
Query: 245 LGALDLG 251
G ++ G
Sbjct: 335 SGLVNEG 341
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 38/250 (15%)
Query: 95 HAFSSLR--HP---LQAIA-FYLYMLRAEVLLTTVHGQVWKNG-FSSPVFVQTAMVDNYS 147
HA + LR HP L+A A ++LR +L +H + + G +S V ++V Y
Sbjct: 66 HAAALLRRVHPSVYLRAAARLPSHLLRRSLLGPQLHSLLLRTGHVASDTHVSASLVQLYC 125
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
++R V F EM R WN MI Y + +L LF+ MP ++ SWTT
Sbjct: 126 TCRHVADARSV----FHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTT 181
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RG 253
+I Y+Q ++ EA++ F + + G D V + +VLSAC LGA+DLG RG
Sbjct: 182 VIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRG 241
Query: 254 IQ-------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
++ + C + +++ VF + EK+++ W ++ A+HG +A+ MF
Sbjct: 242 LRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFR 301
Query: 301 RMTYENVRPN 310
RM EN+ PN
Sbjct: 302 RMERENMAPN 311
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 82 VFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
+F M E NV V ++ +R P +A+ + M +V G + S+
Sbjct: 167 LFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRM---QVEGIEPDGVALLSVLSA--C 221
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKM 192
VD + ++F V R L E+P N++ID Y + A +F M
Sbjct: 222 GDLGAVDLGEWVHRFV----VRRGLRQEIP-----LMNSIIDMYMKCGCIEKAVEVFEGM 272
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ +WTT+I ++ + +A++ F + ++ + VT +LSAC+H+G DLGR
Sbjct: 273 EEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGR 332
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 159/346 (45%), Gaps = 58/346 (16%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
NS P S+ + I + L++ I ++ ++A +++ + D F+ + + C S+ H
Sbjct: 38 NSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHA 96
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------- 122
IDY +F PNV++Y A F S + AI Y ML +L
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 123 ------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
VH + K G SS V+ +++ Y + ++RRV F+EMPE
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRV----FEEMPEDV 212
Query: 171 FATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
A+ MI +Y+ A +F+++ D WT MI + +N++ AL+AF +
Sbjct: 213 VAS-TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG 271
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
++ T+ VLSAC+ LGAL++GR + Y C S+
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ VF ++++++++ +N++ L+++G + +A+ +F M +RP
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRP 377
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R A+ +F++M D+ ++ TMI+ S N + R+A++ F
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 376
Query: 230 SDQVTMATVLSACAHLGALDLG 251
VT VL+AC+H G +D G
Sbjct: 377 PTNVTFVGVLNACSHGGLVDFG 398
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 118/215 (54%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q K S+ VFV +A++D Y + +++ + F +P++ WN++I Y+
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI----FYSLPQKNIVCWNSLISGYS 455
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
AE LF KMPA ++ SW ++I+ Y+QN+QF +AL +F+ SG ++T ++
Sbjct: 456 NNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSS 515
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA L +L++G+ GI+ +Y +S L S VF+++ ++N
Sbjct: 516 VLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 576 DVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FDEM R +W ++D YA L +L + ++MP + SW T++ + Q
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
+EA+ +++ G + ++VL ACA L L GR I
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 256 ----IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C+ L + ++F+ L +KN++CWNS+ + + EA +F +M NV
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MPER ++ TM+DA R A L+ + P + +T MI + N+
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++AL F++ G +++T+ +V+ AC G DL I L + L +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV--------GLAMKSNLLD 278
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
KNL NS+ G A A MFD M +V
Sbjct: 279 KNLGVRNSLITLYLRKGDADAARRMFDEMEVRDV 312
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ K G +FV TA+ D Y+ S S+RV F EMP+R
Sbjct: 532 VHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV----FYEMPKRN------------ 575
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ +WT MI ++N E++ F +G ++ T +L AC
Sbjct: 576 -------------DV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621
Query: 243 AHLGALD 249
+H G ++
Sbjct: 622 SHSGLVE 628
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 155/355 (43%), Gaps = 89/355 (25%)
Query: 12 SFKKNSFPTSV--------SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAK 63
SF K S TSV R ++A+ KC+S+ +L+ ++A ++ + D + A
Sbjct: 8 SFTKLSILTSVLHPPPPPPPPPRXSLLAD---KCTSMHQLKQIHAQMIVSARIHDNYAAS 64
Query: 64 QFISFCT-SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV 118
+ +SFC S + Y + +F QEPN F+++ A +S +P +A+ Y+ M R +V
Sbjct: 65 RLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDV 124
Query: 119 L---------------------LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
+ VH V K G + V +V YS S R
Sbjct: 125 IPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDV----R 180
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
+RR+FDE+ ER + W TTMI+ Y+QN EAL
Sbjct: 181 NARRVFDEVSERSLSIW--------------------------TTMISGYAQNYCSNEAL 214
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--- 266
+ F++ G + T+A+VLSACA G LDLG I ++ LG +L+
Sbjct: 215 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 274
Query: 267 -----------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F + E+N WN++ LA+HG A EAL F ++ E + PN
Sbjct: 275 AKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPN 329
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LFN + W T+I +++ + EAL + ++ + T +L AC++ +
Sbjct: 84 LFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQS 143
Query: 248 LDLGRGIQIYCRSLGRSL----------------------LVFFKLREKNLLCWNSITEA 285
L + + G L VF ++ E++L W ++
Sbjct: 144 LQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISG 203
Query: 286 LAIHGFAHEALGMFDRMTYENVRPNG 311
A + ++EAL +FD+M E + PNG
Sbjct: 204 YAQNYCSNEALELFDQMIVEGLEPNG 229
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 118/215 (54%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q K S+ VFV +A++D Y + +++ + F +P++ WN++I Y+
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI----FYSLPQKNIVCWNSLISGYS 455
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
AE LF KMPA ++ SW ++I+ Y+QN+QF +AL +F+ SG ++T ++
Sbjct: 456 NNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSS 515
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA L +L++G+ GI+ +Y +S L S VF+++ ++N
Sbjct: 516 VLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 576 DVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FDEM R +W ++D YA L +L + ++MP + SW T++ + Q
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
+EA+ +++ G + ++VL ACA L L GR I
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 256 ----IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C+ L + ++F+ L +KN++CWNS+ + + EA +F +M NV
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MPER ++ TM+DA R A L+ + P + +T MI + N+
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++AL F++ G +++T+ +V+ AC G DL I L + L +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV--------GLAMKSNLLD 278
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
KNL NS+ G A A MFD M +V
Sbjct: 279 KNLGVRNSLITLYLRKGDADAARRMFDEMEVRDV 312
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ K G +FV TA+ D Y+ S S+RV F EMP+R
Sbjct: 532 VHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV----FYEMPKRN------------ 575
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ +WT MI ++N E++ F +G ++ T +L AC
Sbjct: 576 -------------DV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621
Query: 243 AHLGALD 249
+H G ++
Sbjct: 622 SHSGLVE 628
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 145/339 (42%), Gaps = 74/339 (21%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC--TSRFHFIDYTILVFPQMQ 87
+ + L KC S+ EL ++A ++KTN F + I+FC + +DY VF ++Q
Sbjct: 9 VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68
Query: 88 EPNVFVYHA----FSSLRHPLQAIAFYLYMLRA------------EVLLTT--------- 122
PN F++ A FS +P++++ Y ML VL
Sbjct: 69 HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128
Query: 123 --VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VHGQV K FV +MV Y F ++RR+FD MP R +WN+MI
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYID----FGEIELARRVFDRMPNRDVVSWNSMIAG 184
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y + E+ LF++MP D+ S MI Y +E L G D +
Sbjct: 185 YLKAGEIELASELFDEMPERDLVSCNAMIDGYG-----KEMLSL-------GLRPDGPAI 232
Query: 236 ATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKL- 271
+VLSA A LG ++ G+ + Y C + + VF +
Sbjct: 233 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 292
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N+ WNS+ LAIHG A EAL +F M ++ PN
Sbjct: 293 HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPN 331
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
+I W +MI+ + + REALD F + ++ +++T +LS C+H G ++ G Q
Sbjct: 296 NIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG---Q 352
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
Y S+ + +++ + + + G +ALG+ M +E
Sbjct: 353 FYFESMHEKYKIVPRIQH-----YGCMIDLFGRAGRLEDALGVIQNMPFE 397
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 38/261 (14%)
Query: 84 PQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLL---TTVHGQVWKNGFSSPVFVQT 140
P ++FV F ++ F L + LL +VH Q+ + G + FVQT
Sbjct: 44 PTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQT 103
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA-----YARLAELLFNKMPAW 195
+++ YS +R++FDE+P+ +WN++I+A +A LF MP
Sbjct: 104 SLISMYSSCGNL----GFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPER 159
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGALDLGR 252
++ SW+ MI Y + Q++EAL F + + G ++ TM+ VL+AC LGAL+ G+
Sbjct: 160 NVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGK 219
Query: 253 GIQIY----------------------CRSLGRSLLVFFKL-REKNLLCWNSITEALAIH 289
Y C S+ ++ VF L K+++ W+++ LA+H
Sbjct: 220 WAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMH 279
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G A E +G+F +M + VRPN
Sbjct: 280 GLAEECVGLFSKMINQGVRPN 300
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 175 NTMIDAYARLAEL------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+ID YA+ + N P D+ +W+ MI+ + + E + F+K G
Sbjct: 238 TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV 297
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
+ VT V AC H G + G+
Sbjct: 298 RPNAVTFLAVFCACVHGGLVSEGK 321
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 155/347 (44%), Gaps = 70/347 (20%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNV 91
Q+K C S++EL+ V+A +VKT D +A + + TS F I Y + VF Q+ E N
Sbjct: 21 QIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNC 80
Query: 92 FVYH------AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------V 123
F ++ A + RH L A+ + ML + V
Sbjct: 81 FAWNTVIRALAETQDRH-LDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQV 139
Query: 124 HGQVWKNGFSSPVFVQT------AMVDNYSYSNKFF----ESRRVSRRLFDEMPERKF-- 171
HG + K G FV T M + +N F E R L + R+F
Sbjct: 140 HGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNV 199
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
N M+D YAR+ L LF++M + SW MI+ Y+QN ++EA++ F++ +
Sbjct: 200 VLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQM 259
Query: 227 GTG-SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
G ++VT+ +VL A + LG L+LG+ + +Y C S+ +
Sbjct: 260 GDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEK 319
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ VF +L + N++ WN++ LA+HG A++ RM + P+
Sbjct: 320 AIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPS 366
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D YA+ + +F ++P ++ +W +I + + + + + ++ +K G
Sbjct: 305 SALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGIS 364
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
VT +LSAC+H G +D GR
Sbjct: 365 PSDVTYIAILSACSHAGLVDEGR 387
>gi|255575930|ref|XP_002528862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531713|gb|EEF33536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 64/295 (21%)
Query: 71 SRFHFIDYTILVFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLR----------- 115
++FH Y+ V+ ++ P+VF + FS PL+++ FY MLR
Sbjct: 71 NQFH---YSYSVYQSIKNPSVFASNNMIRCFSKSELPLESVVFYSSMLRRFIRPNNYSFT 127
Query: 116 ----------AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--SRRLF 163
+ +H V K GF V+V+ A++ + FF RV S+++F
Sbjct: 128 FLFQGCGKGLGFIEGVQIHCHVIKFGFCEDVYVRNALI------HFFFACCRVECSKQVF 181
Query: 164 DEMPER-KFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
+E P R TWN M+ +AR + E +F++M D+ SW TMI +Y N + E L
Sbjct: 182 EENPRRCDIVTWNAMLAGFARDGQVAVVEKMFDEMYERDVISWNTMIMAYVHNGKLEEGL 241
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IY 257
+ F + ++S D+ T TVLSA A LG L+ GR ++ +Y
Sbjct: 242 ECFRRMRESELVPDEATFVTVLSASAQLGLLEHGRLVRSIIDALNVTMTSALGTALLDMY 301
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + + L+F KL ++++ WN + LA HG EA+ +F+R + +RP+
Sbjct: 302 AKCGCIEQCRLLFDKLPQRDISTWNVMICGLASHGLGKEAISLFERFLSKGLRPS 356
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 119/215 (55%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K G S+ VFV +++D Y NK +++ + FD +P++ WN+++ Y+
Sbjct: 401 IHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTI----FDTLPQKNIVCWNSLVSGYS 456
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ LF KMPA ++ SW T+I+ Y+QN+QF +AL +FN SG ++T ++
Sbjct: 457 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSS 516
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA+L +L G+ GI+ +Y +S L S +F+++ E+N
Sbjct: 517 VLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 576
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 577 DVTWTAMIQGLAENGFAEESILLFEDMMATGMTPN 611
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L+ V + N F S + VQ +++ Y +R+V FDEM + +W ++D
Sbjct: 266 LSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKV----FDEMDVKDVVSWTALLD 321
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y+ +L + + MP + SW T+I + Q EA+ +++ G +
Sbjct: 322 VYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISC 381
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSL------------------------GRSLLVFFK 270
++VLSACA L DL G +I+ RSL G + +F
Sbjct: 382 FSSVLSACASLE--DLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDT 439
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L +KN++CWNS+ + +G EA+ +F +M N+
Sbjct: 440 LPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNL 476
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY---ARLAEL--LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MP+R ++ TM+DA R+AE L+ + P+ + +T I+ + +N+
Sbjct: 168 ARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELH 227
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
AL F K + +T+ ++ AC +GA + G + I ++ + FF E
Sbjct: 228 HNALGVFRKMLSCRVRPNGITIVCMIKAC--VGAGEFGLALSIVGLAIKSN---FF---E 279
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++ NS+ G A A +FD M ++V
Sbjct: 280 SSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDV 313
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 118/215 (54%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q K S+ VFV +A++D Y + +++ + F +P++ WN++I Y+
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI----FYSLPQKNIVCWNSLISGYS 455
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
AE LF KMPA ++ SW ++I+ Y+QN+QF +AL +F+ SG ++T ++
Sbjct: 456 NNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSS 515
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA L +L++G+ GI+ +Y +S L S VF+++ ++N
Sbjct: 516 VLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 576 DVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FDEM R +W ++D YA L +L + ++MP + SW T++ + Q
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
+EA+ +++ G + ++VL ACA L L GR I
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 256 ----IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C+ L + ++F+ L +KN++CWNS+ + + EA +F +M NV
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MPER ++ TM+DA R A L+ + P + +T MI + N+
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++AL F++ G +++T+ +V+ AC G DL I L + L +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV--------GLAMKSNLLD 278
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
KNL NS+ G A A MFD M +V
Sbjct: 279 KNLGVRNSLITLYLRKGDADAARRMFDEMEVRDV 312
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ K G +FV TA+ D Y+ S S+RV F EMP+R
Sbjct: 532 VHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV----FYEMPKRN------------ 575
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ +WT MI ++N E++ F +G ++ T +L AC
Sbjct: 576 -------------DV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621
Query: 243 AHLGALD 249
+H G ++
Sbjct: 622 SHSGLVE 628
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K GFSS +FV+ A++ Y+ V+ R+FDE +W+ ++ A+
Sbjct: 93 IHGAVLKLGFSSHLFVRNALIHLYAARGNPV----VAWRVFDETVGVDVVSWSGLVLAHV 148
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R EL +F++MP D+ SWTTM+++YSQ K REAL+ + G D+VT+ +
Sbjct: 149 RAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVS 208
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V+SAC +LG L +G + Y C + R+ VF + K+
Sbjct: 209 VISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKS 268
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L+ WNS+ A A + +A G+F RM V P+G
Sbjct: 269 LVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDG 304
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +FN M + +W +MI++ + N+ +A F++ G
Sbjct: 242 NALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVA 301
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT VL+A AH+G +D G
Sbjct: 302 PDGVTFLAVLTAYAHVGLVDEG 323
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 58/329 (17%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+CS+++EL+ ++A ++KT D A + ++FC + +Y LVF ++ N FV++
Sbjct: 34 RCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWN 93
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEVLLTT-----------------------VHGQVW 128
FS P AI+ ++ ML + + +HG+V
Sbjct: 94 TIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVI 153
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL---- 184
K G F++ M+ Y E+ R LF M WN++I A+
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLVEAWR----LFVGMMGFDVVAWNSIIMGLAKCGLID 209
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A+ LF++MP + SW +MI+ + +N +F++AL+ F + ++ D TM ++L+ACA
Sbjct: 210 QAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACA 269
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+LGA + GR I Y C L VF K L CWNS
Sbjct: 270 YLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNS 329
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA +G A+ +F + + P+
Sbjct: 330 MILGLANNGCEERAMDLFLELERTGLEPD 358
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 30/126 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + +N F V TA++D Y F E +V F+ P ++ + WN+M
Sbjct: 280 IHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKV----FECAPTKQLSCWNSM----- 330
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
I + N A+D F + +++G D V+ VL+AC
Sbjct: 331 ---------------------ILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTAC 369
Query: 243 AHLGAL 248
AH G +
Sbjct: 370 AHSGEV 375
>gi|255570436|ref|XP_002526177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534554|gb|EEF36253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 293
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V T MVD Y+ K ++R LF+EMP+R + W++MI Y +L ++ +F+
Sbjct: 70 VVTWTVMVDGYASKGKMADARI----LFEEMPDRNYFVWSSMISGYCKLGDVKEARCIFD 125
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P ++ +W ++I Y+QN EAL+AF + G D++T+ VLSACA LG LD+
Sbjct: 126 RIPIRNLVNWNSLICGYAQNGFCEEALEAFENMQADGFEPDEITVVGVLSACAQLGLLDV 185
Query: 251 G---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G +GI++ C L + +F + KN CWN++ AI
Sbjct: 186 GKDVHRMAYNKGIKLNQFIMNALVDMYAKCGDLTTARSIFEGMTYKNNACWNAMISGFAI 245
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG +AL F RM N +P+
Sbjct: 246 HGQCKKALEFFRRMEESNEKPD 267
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 166 MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
MPER TWN MI Y R ++ LF KM + +W MI +++N A F
Sbjct: 1 MPERNVVTWNAMISGYVRNRDMKSALGLFEKMSIRTMVTWIEMIDGFARNGDLVTARCLF 60
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGR----------------GIQIYCR--SLG 262
++ + VT ++ A G + R I YC+ +
Sbjct: 61 DQVPLE--QKNVVTWTVMVDGYASKGKMADARILFEEMPDRNYFVWSSMISGYCKLGDVK 118
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +F ++ +NL+ WNS+ A +GF EAL F+ M + P+
Sbjct: 119 EARCIFDRIPIRNLVNWNSLICGYAQNGFCEEALEAFENMQADGFEPD 166
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 155/344 (45%), Gaps = 57/344 (16%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNA-NLDCFLAKQFISFCTSRFHFIDY 78
T+V+F +A+ ++C+ +++L+ ++A +T + L K F S + Y
Sbjct: 4 TTVAFT----LAHMAERCTCMRDLKLLHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRY 59
Query: 79 TILVFPQMQEPNVFVY------HA-----------FSSLRH----PLQAIAFYLYMLRAE 117
+F QM P F Y HA F+ +R P Q +L R+
Sbjct: 60 AHRMFDQMPHPTTFFYNTLIRAHAHSTTPSLSSLSFNLMRQNNVAPDQFSFNFLLKSRSR 119
Query: 118 VLLTT----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
T VHG V K GF + VQ ++ Y+ +RRV + E +
Sbjct: 120 TTPLTHHNDVHGAVLKFGFCRHLHVQNGLIHFYANRGMTLLARRVFEDVLQLGLEVDVVS 179
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W+ ++ A+ + EL +F++MP D+ SWT M+T YSQ K+ REAL+ F + ++SG
Sbjct: 180 WSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGV 239
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
D+VTM +++SACA LG ++ G + + C L +
Sbjct: 240 WPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWR 299
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L+ WN++ A +G A EA +F+ M V P+
Sbjct: 300 VFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPD 343
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 23/179 (12%)
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
VF +M + +V + A +S + P +A+ + M R+ VW + +
Sbjct: 199 VFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRS---------GVWPDEVTMVSL 249
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
V +A R V F M A N +ID Y + L +F+ M
Sbjct: 250 V-SACASLGDMETGMMVHRFVEENGFGWM----VALCNALIDMYGKCGCLEEAWRVFHGM 304
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+ +W TM+T + EA F SG D VT+ +L A AH G +D G
Sbjct: 305 TRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYAHKGLVDEG 363
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 147/329 (44%), Gaps = 72/329 (21%)
Query: 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVY------ 94
L ++A ++KT + + + I FC HF + Y I VF +QEPN+ ++
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGFS 133
HA SS P+ A+ Y+ M+ +L +HG V K G+
Sbjct: 63 HALSS--DPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELL 188
++V T+++ Y + + ++R+V FD+ R ++ +I YA A+ +
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKV----FDQSSHRDVVSYTALITGYASKGYIASAQKM 176
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F+++P D+ SW MI+ Y++ +EAL+ F + K+ D+ TM +V+SACA ++
Sbjct: 177 FDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASI 236
Query: 249 DLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+LGR + I C + + +F L K+++ WN++
Sbjct: 237 ELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL---- 292
Query: 287 AIHGFAH-----EALGMFDRMTYENVRPN 310
I G+ H EAL +F M PN
Sbjct: 293 -IGGYTHMNLYKEALLLFQEMLRSGESPN 320
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + E+ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 259 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+++GR I +Y C + +
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 378
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ A+HG A+ A +F RM + P+
Sbjct: 379 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 423
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ + + SW MI ++ + + A D F++ +K+
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIF-------RSMKEDYKITPK-LEHYGCMIDLLGHSG 474
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M E P+G
Sbjct: 475 LFKEAEEMINTMEME---PDG 492
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 116/208 (55%), Gaps = 33/208 (15%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAEL 187
SS F+ +A+V Y+ S E+R+V FDE+ R A +N ++ AYA+ AE
Sbjct: 119 SSDPFLSSALVSFYAKSKLLVEARKV----FDELTCRDTAVYNALLSAYAKGGLVDSAEK 174
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACAHLG 246
LF +MP ++ SWT M++ Y+QN + EA++ F + +++G +++T+++VL ACA +G
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
Query: 247 ALDLGRGIQIYCRSLG--RSLLVFFKL---------------------REKNLLCWNSIT 283
A++LGR ++ Y R G R++ V L R+++L WNS+
Sbjct: 235 AMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMI 294
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
A A+HG EAL +F ++ V+P+G
Sbjct: 295 MAFAVHGLWREALALFYKLRMAGVKPDG 322
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ SW +MI +++ + +REAL F K + +G D +T V+ AC H G ++ G+
Sbjct: 286 DLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGK 342
>gi|224164620|ref|XP_002338705.1| predicted protein [Populus trichocarpa]
gi|222873268|gb|EEF10399.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 102 HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRR 161
HP + ++L+ + VH Q+ K GF VQTA++D+YS S ++RR
Sbjct: 26 HPKPNHFLFPHVLKYCQVTKFVHAQIEKLGFGQYPVVQTALIDSYSRSGYDIG---IARR 82
Query: 162 LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREA 216
+FDEM ER +W MI Y RL E+ LF++MP D+ SW +I+ +QN F A
Sbjct: 83 MFDEMSERNVVSWTAMISGYTRLGEIENAITLFDEMPERDVPSWNAVISGCAQNGLFTRA 142
Query: 217 LDAFNK-------TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
+ F K + +Q T+ LSAC H G L +G+ I Y
Sbjct: 143 ITIFKKMVGLSLEVQHRDMRPNQTTVVCALSACGHTGMLHVGKWIHGYVYRNMRSSDSFV 202
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C L + VF +K+L WNS+ LA+HG + A+ +F+ M +
Sbjct: 203 LNALVDMYGKCGCLKEAKKVFDATSKKSLTSWNSMINCLALHGQSERAICVFEEMLH 259
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 152/360 (42%), Gaps = 82/360 (22%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF-HFIDYTILVFPQMQEPNVF 92
L KCSS+K + ++A I KT + D + + + C + Y + +F P+ F
Sbjct: 9 LSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTF 68
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHGQ 126
+++ + S + PL ++ ++ + R L +H Q
Sbjct: 69 MHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQ 128
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------S 159
+++GF + +FV T ++ Y+ +RRV +
Sbjct: 129 AFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGA 188
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFR 214
+ +F MP R +WN M+ YA+ EL +F +MP D SW+TMI ++ N F
Sbjct: 189 QDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFD 248
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
EA F + + +++V++ VLSACA GA + G+ + +
Sbjct: 249 EAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALI 308
Query: 258 -----CRSLGRSLLVFFKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C ++ + LVF + ++++ W SI LA+HG EA+ +F M VRP+G
Sbjct: 309 DTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDG 368
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N +ID Y++ +A L+F MP A I SWT++I + + EA+ F++ ++SG
Sbjct: 305 NALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGV 364
Query: 229 GSDQVTMATVLSACAHLGALDLGRGI 254
D +T ++L AC+H G ++ G G+
Sbjct: 365 RPDGITFISLLYACSHSGLVEEGCGL 390
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 61/334 (18%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+ C +++ L+ ++A + N + LAK F S + Y +F Q+ +PN F
Sbjct: 3 EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 62
Query: 94 YHA-----------------FSSLR-HPLQAIAF-YLYMLRAE----------VLLTTVH 124
Y+ F+ +R + + F + ++L+ V +H
Sbjct: 63 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIH 122
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
G V K GF +FV A++ Y+ + +V F+EM +W+ ++ A+ R
Sbjct: 123 GAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQV----FNEMVGADVVSWSGLVVAHVRA 178
Query: 185 AEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
EL +F +MP D+ SWT M++ Y+Q K+ REAL+ F + + G D+V M +V+
Sbjct: 179 GELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVI 238
Query: 240 SACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL 277
SAC LG L+ G + Y C + + VF + K+L+
Sbjct: 239 SACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLI 298
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
WNS+ A A HG A +A +F M Y +RP+G
Sbjct: 299 TWNSMISACANHGNAEDAFRVFTLMLYSGIRPDG 332
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ LA +FN M + +W +MI++ + + +A F SG
Sbjct: 270 NALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIR 329
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D VT +L+A H G +D G G+
Sbjct: 330 PDGVTFLALLTAYTHKGWVDDGYGL 354
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 148/334 (44%), Gaps = 61/334 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVF 92
L+ C S+ +++ +A ++ T L A + + S F + Y +F Q+ +P+VF
Sbjct: 22 LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVF 81
Query: 93 VYHAFSSLRHPL-----QAIAFYLYMLRAEVLLTT----------------------VHG 125
+Y+ + ++ +L M+R L +
Sbjct: 82 IYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRV 141
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
K G S +FV AM+ Y+ E+RRV FD ++ +WN MI Y
Sbjct: 142 HAIKIGLESNLFVTNAMIRMYANWGLVDEARRV----FDWSLDQDLYSWNIMIGGYVGSG 197
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
E+ +F++M D+ SWTT+I Y Q F+EALD F++ ++G ++ T+A+ L+
Sbjct: 198 EIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALA 257
Query: 241 ACAHLGALDLGRGIQIYC---------RSLGRSLLVFFKLREKNLLC------------- 278
ACA+L ALD GR I +Y R L L ++ K E +
Sbjct: 258 ACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKV 317
Query: 279 --WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A+HG + EA+ +F++M E V PN
Sbjct: 318 WPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPN 351
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 165 EMPERKFATWNTMIDAYARLAELLFN----------KMPAWDIRSWTTMITSYSQNKQFR 214
+M ER A+ ++D YA+ E+ F K+ W W MI Y+ + + +
Sbjct: 281 KMNERLLAS---LLDMYAKCGEIDFAAKVFHDEYGLKLKVW---PWNAMIGGYAMHGKSK 334
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
EA+D F + K ++VT +L+AC+H ++ GRG Y +S+ S
Sbjct: 335 EAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRG---YFKSMASS 381
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 118/215 (54%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q K S+ VFV +A++D Y + +++ + F +P++ WN++I Y+
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMI----FYSLPQKNIVCWNSLISGYS 455
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
AE LF KMPA ++ SW ++I+ Y+QN+QF +AL +F+ SG ++T ++
Sbjct: 456 NNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSS 515
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA L +L++G+ GI+ +Y +S L S VF+++ ++N
Sbjct: 516 VLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 576 DVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FDEM R +W ++D YA L +L + ++MP + SW T++ + Q
Sbjct: 300 ARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNA 359
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
+EA+ +++ G + ++VL ACA L L GR I
Sbjct: 360 KEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSAL 419
Query: 256 ----IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C+ L + ++F+ L +KN++CWNS+ + + EA +F +M NV
Sbjct: 420 IDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MPER ++ TM+DA R A L+ + P + +T MI + N+
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++AL F++ G +++T+ +V+ AC G DL I L + L +
Sbjct: 227 KDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV--------GLAMKSNLLD 278
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
KNL NS+ G A A MFD M +V
Sbjct: 279 KNLGVRNSLITLYLRKGDADAARRMFDEMEVRDV 312
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ K G +FV TA+ D Y+ S S+RV F EMP+R
Sbjct: 532 VHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV----FYEMPKRN------------ 575
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ +WT MI ++N E++ F +G ++ T +L AC
Sbjct: 576 -------------DV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621
Query: 243 AHLGALD 249
+H G ++
Sbjct: 622 SHSGLVE 628
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 116/208 (55%), Gaps = 33/208 (15%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAEL 187
SS F+ +A+V Y+ S E+R+V FDE+ R A +N ++ AYA+ AE
Sbjct: 119 SSDPFLSSALVSFYAKSKLLVEARKV----FDELTCRDTAVYNALLSAYAKGGLVDSAEK 174
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACAHLG 246
LF +MP ++ SWT M++ Y+QN + EA++ F + +++G +++T+++VL ACA +G
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
Query: 247 ALDLGRGIQIYCRSLG--RSLLVFFKL---------------------REKNLLCWNSIT 283
A++LGR ++ Y R G R++ V L R+++L WNS+
Sbjct: 235 AMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMI 294
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
A A+HG EAL +F ++ V+P+G
Sbjct: 295 MAFAVHGLWREALALFYKLRMAGVKPDG 322
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ SW +MI +++ + +REAL F K + +G D +T V+ AC H G ++ G+
Sbjct: 286 DLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGK 342
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 163/385 (42%), Gaps = 103/385 (26%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVF 83
IR+ + ++L++ SS+KE+E I K+ F+ + ISF + S + Y +F
Sbjct: 110 IRVPDLLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIF 169
Query: 84 PQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLR-----------------AEVLLTT 122
N FV + A++ P++AI Y +M R A VL
Sbjct: 170 EDTAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCN 229
Query: 123 -----------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165
+H ++++ G F+Q ++V Y YS F ++R +FDE
Sbjct: 230 EGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLV--YLYSQCGFLD--LARCVFDE 285
Query: 166 MPERKFATWNTMIDAYARL------------------------------------AELLF 189
M E+ +WN MI AY ++ A+++F
Sbjct: 286 MTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVF 345
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+MP D SW +MI Y Q K + AL F + + + + +T+ +VL ACA GAL+
Sbjct: 346 QEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALE 405
Query: 250 LGRGIQI----------------------YCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+GR I + C L + VF +L+ K++ CWN++ +LA
Sbjct: 406 IGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLA 465
Query: 288 IHGFAHEALGMFD--RMTYENVRPN 310
+HG+ EAL +F M+ + RPN
Sbjct: 466 VHGYCEEALRLFSTMEMSVDGARPN 490
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 157 RVSRRLFDEMPERKFATW----NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
+ R++ + +R++ N ++D YA+ L +F+++ I W MI S
Sbjct: 405 EIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSL 464
Query: 208 SQNKQFREALDAFNKTKKSGTGS--DQVTMATVLSACAHLGALDLGR 252
+ + EAL F+ + S G+ ++VT VL AC+H G +D GR
Sbjct: 465 AVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGR 511
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 139/313 (44%), Gaps = 51/313 (16%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
+I K +++KE E V+ ++K+ + F+A I S I VF +M E
Sbjct: 56 VILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASG-GAIHAAYRVFGEMIE 114
Query: 89 PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
NV + A I Y+ L T +++ + + M+ Y
Sbjct: 115 RNVIAWTAM---------INGYITCCD----LVTAR-RLFDLAPERDIVLWNTMISGY-- 158
Query: 149 SNKFFESRRV--SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWT 201
E++ V +R LFD+MP + +WNT+++ YA E LF +MP ++ SW
Sbjct: 159 ----IEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWN 214
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQIYCRS 260
+I Y++N F E L AF + GT + T+ VLSACA LGALDLG+ + +Y S
Sbjct: 215 ALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAES 274
Query: 261 LG----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
G +L VF + K+L+ WN+I LA+HG +AL +
Sbjct: 275 HGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNL 334
Query: 299 FDRMTYENVRPNG 311
F M P+G
Sbjct: 335 FSHMKIAGENPDG 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F M D+ SW T+I + + +AL+ F+ K +G
Sbjct: 285 NALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGEN 344
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D +T +L AC H+G ++ G
Sbjct: 345 PDGITFIGILCACTHMGLVEDG 366
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F+++P + W M YSQN+ ++ + F + K + T +L +C
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
+ AL G + + G F+ N ++ + A G H A +F M
Sbjct: 64 INALKEGEEVHCFVIKSG------FR---ANPFVATTLIDMYASGGAIHAAYRVFGEMIE 114
Query: 305 ENV 307
NV
Sbjct: 115 RNV 117
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 104/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
++GQ+ K GF S VFV + +VD Y+ ++++R FDEMPER NTMI
Sbjct: 160 INGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRY----FDEMPERNVVMCNTMITGLM 215
Query: 183 RLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R + LF + D SWT MIT QN REALD F + + +G DQ T +
Sbjct: 216 RCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGS 275
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+AC L AL G+ I Y CRS+ + VF ++ +KN
Sbjct: 276 VLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKN 335
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ +GF+ EA+ +F M V P+
Sbjct: 336 VISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPD 370
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 31/166 (18%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y++ AE +F +MP ++ SWT M+ Y QN EA+ F + +++G
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVE 368
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL----------------------- 266
D T+ +V+S+CA+L +L+ G Q +CR+L L+
Sbjct: 369 PDDFTLGSVISSCANLASLE--EGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSH 426
Query: 267 -VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+F ++ ++ + W ++ A G A+E +G+F+RM ++P+G
Sbjct: 427 RLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDG 472
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+ +FD +P+ +WNT++ Y++L L +FN MP D SW I+ Y+
Sbjct: 59 AHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSC 118
Query: 214 REALDAFN-KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
+A+ + K + +++T +T+L C+ +DLGR I G VF
Sbjct: 119 SDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVG-- 176
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ + + G ++A FD M NV
Sbjct: 177 -------SPLVDMYTKLGLIYDAKRYFDEMPERNV 204
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I Y + LF +M D SWT ++ Y+Q + E + F + G
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLK 469
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
D VT VLSAC+ G ++ +G+Q +
Sbjct: 470 PDGVTFIGVLSACSRAGLVE--KGLQYF 495
>gi|255541023|ref|XP_002511576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550691|gb|EEF52178.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 82/358 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF-HFIDYTILVFPQMQEPNVFV 93
K C ++ L+ +A ++K D L + + CT IDY + +F P+VF+
Sbjct: 13 KNCKNVASLKQFHANVLKIGLQNDLLLIGKLLLHCTIVLSDSIDYALSLFRDTPNPDVFM 72
Query: 94 YH----AFSSLRHPLQAIAFYL----------------YMLRAEVLLTTVHG------QV 127
Y+ + P ++IA +L ++L+A L ++ G Q
Sbjct: 73 YNTLIRGLAESDSPQKSIATFLELRKESALSPDSFSFAFVLKAAAYLRSLRGGIQLHCQA 132
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SR 160
WK G ++ +FV T ++ Y +R+V +
Sbjct: 133 WKYGLNAHLFVGTTLISMYGECGCVGYARQVFGEMHEPNVIAWNAVIAACFRGGDVKEAG 192
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
++F M R +WN M+ Y ++ EL +F +M D SW+TMI ++ N F E
Sbjct: 193 KMFSLMVFRDLTSWNVMLAGYVKIGELQLAREMFLEMAVKDDVSWSTMIVGFAHNGCFDE 252
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------ 257
A F + + GT ++V++ VLSACA GA + G+ + +
Sbjct: 253 AFGYFRELLRKGTRPNEVSLTGVLSACAQAGAFEFGKILHGFIEKAGLLWIISVNNALLD 312
Query: 258 ----CRSLGRSLLVFFKLRE-KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C +LG + LVF ++ E K+++ W S+ LA+HG EA+ +F M RP+
Sbjct: 313 TYSKCGNLGMAQLVFERMPEKKSIISWTSMMACLAMHGLGEEAIKLFHEMEEYGTRPD 370
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N ++D Y++ +A+L+F +MP I SWT+M+ + + EA+ F++ ++ GT
Sbjct: 308 NALLDTYSKCGNLGMAQLVFERMPEKKSIISWTSMMACLAMHGLGEEAIKLFHEMEEYGT 367
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
D++T +L AC+H G ++ G
Sbjct: 368 RPDEITFILLLYACSHAGLVEQG 390
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 147/327 (44%), Gaps = 58/327 (17%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA- 96
SS+ + ++ +K+ D F+A I C +D VF ++E +V +++
Sbjct: 147 SSLSLGQSLHGMAIKSAVGSDVFVANSLI-HCYFSCGDLDSACKVFTTIKEKDVVSWNSM 205
Query: 97 ---FSSLRHPLQAIAFYLYMLRAEVLLTTVH---------------------GQVWKNGF 132
F P +A+ + M +V + V + +N
Sbjct: 206 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRV 265
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAEL 187
+ + + AM+D Y+ +++R LFD M E+ TW TM+D YA A
Sbjct: 266 NVNLTLANAMLDMYTKCGSIEDAKR----LFDAMEEKDNVTWTTMLDGYAISEDYEAARE 321
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLG 246
+ N MP DI +W +I++Y QN + EAL F++ + + +Q+T+ + LSACA +G
Sbjct: 322 VLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVG 381
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL+LGR I Y C L ++ VF + ++++ W+++
Sbjct: 382 ALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIG 441
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPNG 311
LA+HG EA+ MF +M NV+PNG
Sbjct: 442 GLAMHGCGSEAVDMFYKMQEANVKPNG 468
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 135/313 (43%), Gaps = 53/313 (16%)
Query: 12 SFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT- 70
+F + PT+ + H I+ + +CSS+++L+ +A +++T D + A + +
Sbjct: 17 NFSNPNQPTTNNERSRHTIS-LIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAAL 75
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
S F ++Y VF ++ +PN F ++ A++S P+ +I +L M+ +E Q
Sbjct: 76 SSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSE-------SQ 128
Query: 127 VWKNGFSSPVFVQTAM-VDNYSYSNKFFE---SRRVSRRLFDEMPERKFATWNTMIDAYA 182
+ N ++ P ++ A V + S V +F N++I Y
Sbjct: 129 CYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVF---------VANSLIHCYF 179
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+L +F + D+ SW +MI + Q +AL+ F K + + VTM
Sbjct: 180 SCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVG 239
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VLSACA + L+ GR + Y C S+ + +F + EK+
Sbjct: 240 VLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 299
Query: 276 LLCWNSITEALAI 288
+ W ++ + AI
Sbjct: 300 NVTWTTMLDGYAI 312
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + KNG +V +A++ YS ++R V
Sbjct: 389 IHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREV------------------------ 424
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
FN + D+ W+ MI + + EA+D F K +++ + VT V AC
Sbjct: 425 ------FNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCAC 478
Query: 243 AHLGALD 249
+H G +D
Sbjct: 479 SHTGLVD 485
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 139/305 (45%), Gaps = 59/305 (19%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR 115
L FIS C S DY VF +Q PNV V++A +S + PL++++F+ M
Sbjct: 37 LLLAHFISICGS-LSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKS 95
Query: 116 AEV---------LLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+ LL + VHG++ + GF ++ +V+ Y+ + +
Sbjct: 96 RGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGD 155
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+++V FDEM ER WN MI + ++ LF +M I SW +MI+S S+
Sbjct: 156 AQKV----FDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSK 211
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ-------------- 255
+ REAL+ F + G D+ T+ TVL A LG LD G+ I
Sbjct: 212 CGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFIT 271
Query: 256 -------IYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
YC+S L + +F K++ +N++ WN++ A++G + +FD M E
Sbjct: 272 VGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEG 331
Query: 307 -VRPN 310
V PN
Sbjct: 332 KVAPN 336
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 65/332 (19%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS----RFHFIDYTILVFPQ 85
I+ L+KC S++ L+ ++A ++KT + + + + R F Y +F
Sbjct: 10 ISPLLRKCKSVQHLKQIHAHLLKTYLSQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKN 69
Query: 86 MQEPNVFVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTT------------------ 122
+Q+ N+F+Y++ F S R P QAI YL ++ L
Sbjct: 70 LQQRNIFMYNSMIRGYFLS-RFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELK 128
Query: 123 -----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VH V G+ + FV +A+V+ YS F+ +V+R LFD+ + W M
Sbjct: 129 RIGYLVHAHVIVLGYENDAFVVSALVEFYS----LFD-LKVARVLFDKSSGKDVVVWTVM 183
Query: 178 IDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+D Y ++ A +LF++MP ++ SW+ M+ +YS+ FRE L F + +K +
Sbjct: 184 VDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPND 243
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFK 270
+A+VL+ACAHLGA+ G + Y + G +L VF
Sbjct: 244 SVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEG 303
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ K+ WN++ A+ G ++L +FD+M
Sbjct: 304 ISNKDAGAWNAMISGFAMTGNVVKSLELFDKM 335
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y++ + +F + D +W MI+ ++ ++L+ F+K SGT +
Sbjct: 283 ALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQA 342
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
+ T ++L+AC H ++ RG++ +
Sbjct: 343 TEATFVSILAACTHAKMVE--RGLEFF 367
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 143/324 (44%), Gaps = 68/324 (20%)
Query: 34 LKKCSSI---KELECVYATIVKTNANLDCFLAKQFISFCTSRFH-FIDYTILVFPQMQEP 89
+K C++ KE E V+ + K + F+ I + R F+ VF +M++
Sbjct: 127 VKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDK 186
Query: 90 NVFVYHAFSS----LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN 145
NVF + A + R + A + + +V+L V +V
Sbjct: 187 NVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNV------------------VVSG 228
Query: 146 YSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
Y +R LFD MP+R +WNT++ YA E+ LF +MP ++ SW
Sbjct: 229 YIELGDMV----AARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSW 284
Query: 201 TTMITSYSQNKQFREALDAFNK-----TKKSGTGSDQV------TMATVLSACAHLGALD 249
+I Y +N F+EAL+ F + + GSD V T+ VL+AC+ LG L+
Sbjct: 285 NGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLE 344
Query: 250 LGRGIQIYCRSLG----------------------RSLLVFFKLREKNLLCWNSITEALA 287
+G+ + +Y S+G ++L VF L K+++ WN+I LA
Sbjct: 345 MGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLA 404
Query: 288 IHGFAHEALGMFDRMTYENVRPNG 311
+HG +AL +F+RM RP+G
Sbjct: 405 MHGHVADALSLFERMKRAGERPDG 428
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +F+ + DI +W T+I + + +AL F + K++G
Sbjct: 366 NALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGER 425
Query: 230 SDQVTMATVLSACAHLG 246
D VT +LSAC H+G
Sbjct: 426 PDGVTFVGILSACTHMG 442
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + +N +Q+A+V Y+ S ++ LF++M + M+ Y+
Sbjct: 245 IHDFIMENNIVVDPHLQSALVTMYASCG----SMDLALNLFEKMTPKNLVASTAMVTGYS 300
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+L ++ +FN+M D+ W+ MI+ Y+++ +EAL+ FN+ + G DQVTM +
Sbjct: 301 KLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLS 360
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V++ACAHLGALD + I ++ C SL R+ +F K+ KN
Sbjct: 361 VITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKN 420
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ W + A A+HG A AL F +M EN+ PNG
Sbjct: 421 VISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNG 456
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 133/362 (36%), Gaps = 110/362 (30%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLD-CFLAKQFISFCTSRFHFIDYTILVFPQM 86
H + + L +S+ L+ V+A I+++ + L K IS C + +DY + VF +
Sbjct: 24 HTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSC-ALSSSLDYALSVFNLI 82
Query: 87 QEPNVFVYHAF----SSLRHPLQAIAFYLYM---------------------LRAEVLLT 121
+P + + F S P + + Y M +++ V
Sbjct: 83 PKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+HG K GF S FVQT +V Y+ + E +R +FD+M R TW+ MID Y
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAE----ARLMFDKMFHRDVVTWSIMIDGY 198
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
Q+ F +AL F + K D++ ++TVLSA
Sbjct: 199 C--------------------------QSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSA 232
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN---- 275
C G L G+ I + C S+ +L +F K+ KN
Sbjct: 233 CGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVAS 292
Query: 276 ---------------------------LLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
L+CW+++ A EAL +F+ M ++
Sbjct: 293 TAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIK 352
Query: 309 PN 310
P+
Sbjct: 353 PD 354
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ YA+ L +F+KMP ++ SWT MI++++ + AL F++ +
Sbjct: 394 NALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE 453
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
+ +T VL AC+H G ++ GR I
Sbjct: 454 PNGITFVGVLYACSHAGLVEEGRKI 478
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 33/220 (15%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +H Q +++GF S F T ++ Y+ +RR+FDEM +R WN MI
Sbjct: 101 LRLLHSQFFRSGFESDSFCCTTLITAYAKLGALC----CARRVFDEMSKRDVPVWNAMIT 156
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQV 233
Y R ++ LF+ MP ++ SWTT+I+ +SQN + EAL F K + +
Sbjct: 157 GYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHI 216
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG---------RSLLVFFKL------------- 271
T+ +VL ACA+LG L++GR ++ Y R G ++ ++ K
Sbjct: 217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++NL WNS+ +LA HG EAL +F +M E +P+
Sbjct: 277 GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPD 316
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTT 202
++ Y+ N FF++ V + + MID RL E L N+ ++ SW +
Sbjct: 237 LEGYARENGFFDNIYVCNATIE------MYSKCGMIDVAKRLFEELGNQR---NLCSWNS 287
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
MI S + + + EAL F + + G D VT +L AC H G + G+
Sbjct: 288 MIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQ 337
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 33/220 (15%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +H Q +++GF S F T ++ Y+ +RR+FDEM +R WN MI
Sbjct: 94 LRLLHSQFFRSGFESDSFCCTTLITAYAKLGALC----CARRVFDEMSKRDVPVWNAMIT 149
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQV 233
Y R ++ LF+ MP ++ SWTT+I+ +SQN + EAL F K + +
Sbjct: 150 GYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHI 209
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG---------RSLLVFFKL------------- 271
T+ +VL ACA+LG L++GR ++ Y R G ++ ++ K
Sbjct: 210 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL 269
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++NL WNS+ +LA HG EAL +F +M E +P+
Sbjct: 270 GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPD 309
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTT 202
++ Y+ N FF++ V + + MID RL E L N+ ++ SW +
Sbjct: 230 LEGYARENGFFDNIYVCNATIE------MYSKCGMIDVAKRLFEELGNQR---NLCSWNS 280
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
MI S + + + EAL F + + G D VT +L AC H G + G+
Sbjct: 281 MIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQ 330
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 31/217 (14%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H + NGF +QT++V+ Y+ ++R ++D++P + M+ Y
Sbjct: 238 AIHQFIKDNGFRVGSHIQTSLVNMYANCGAM----HLAREVYDQLPSKHMVVSTAMLSGY 293
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+L A +F++M D+ W+ MI+ Y+++ Q EAL FN+ ++ DQ+TM
Sbjct: 294 AKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITML 353
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
+V+SACA++GAL + I Y C +L ++ VF + K
Sbjct: 354 SVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK 413
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
N++ W+S+ A A+HG A A+ +F RM +N+ PNG
Sbjct: 414 NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 127/326 (38%), Gaps = 82/326 (25%)
Query: 34 LKKCSSIKELECVYATIVKT---NANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEP 89
L C +++ ++ ++A I+++ N+NL S +DY + +F + P
Sbjct: 19 LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNP 78
Query: 90 NVF----VYHAFSSLRHPLQAIAFYLYMLR---------------------AEVLLTTVH 124
+ FS P ++ YL++ R A L +H
Sbjct: 79 PTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIH 138
Query: 125 GQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
G K GF + F+Q+A++ Y+ + ++R LFD+M R TWN MID
Sbjct: 139 GLASKFGFFHADPFIQSALIAMYAACGRIMDARF----LFDKMSHRDVVTWNIMIDG--- 191
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
YSQN + L + + K SGT D + + TVLSACA
Sbjct: 192 -----------------------YSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACA 228
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
H G L G+ I + C ++ + V+ +L K+++ +
Sbjct: 229 HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTA 288
Query: 282 ITEALAIHGFAHEALGMFDRMTYENV 307
+ A G +A +FDRM +++
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDL 314
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 125/322 (38%), Gaps = 56/322 (17%)
Query: 3 VKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLA 62
+ Y +AI K N F S I+ ++ N C ++ VY + + + +
Sbjct: 233 LSYGKAIHQFIKDNGFRVG-SHIQTSLV-NMYANCGAMHLAREVYDQLPSKHMVVSTAML 290
Query: 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEV 118
+ ++ + +F +M E ++ + A ++ PL+A+ + M R +
Sbjct: 291 SGY-----AKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRI 345
Query: 119 LLTTVHG-QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+ + V + VQ + Y+ N F R N +
Sbjct: 346 VPDQITMLSVISACANVGALVQAKWIHTYADKNGF---------------GRTLPINNAL 390
Query: 178 IDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
ID YA+ L+ F MP ++ SW++MI +++ + A+ F++ K+ +
Sbjct: 391 IDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450
Query: 233 VTMATVLSACAHLGALDLGRG---------------------IQIYCRS--LGRSLLVFF 269
VT VL AC+H G ++ G+ + +YCR+ L +++ +
Sbjct: 451 VTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIE 510
Query: 270 KLR-EKNLLCWNSITEALAIHG 290
+ N++ W S+ A HG
Sbjct: 511 TMPFPPNVIIWGSLMSACQNHG 532
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 132/279 (47%), Gaps = 55/279 (19%)
Query: 67 SFCTSRFHFIDYTILVFPQMQEPNVF--------VYHAFSSLRHPLQAIAFYLYMLRAEV 118
S+C +R + +L F +M+ V V A +RH + + YML +++
Sbjct: 145 SYCQTRNY--KEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDI 202
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L+ + +A+++ Y+ S ++ +L++ MP + + M+
Sbjct: 203 LINA--------------HLSSALINLYASC----ASMEMAEKLYNGMPRKDLVSSTAMV 244
Query: 179 DAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YAR +A +F+ MP D+ SW+ MI+ Y+ + Q EAL FN ++ G D+V
Sbjct: 245 FGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEV 304
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM +V+SACA+LG+LD + I + C + +L +F ++
Sbjct: 305 TMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEM 364
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+KN++ W S+ A A+HG AL +F++M E V PN
Sbjct: 365 PQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPN 403
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ AYA A +F+ M D+ SW M+ SY Q + ++EAL F K K SG S
Sbjct: 110 ALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS 169
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
DQ+ +ATVLSAC H+ L G+ I Y
Sbjct: 170 DQLILATVLSACGHIRHLRTGKSIHSY 196
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ LA +FN+MP ++ +WT+MIT+++ + + AL F + + G
Sbjct: 342 NALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVE 401
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
++VT +L AC H G + G RSL S++ + + K+ + + + L
Sbjct: 402 PNEVTFLNLLYACCHAGLVHEG-------RSLFSSMVQQYGIEPKHEH-YGCMVDLLGRA 453
Query: 290 GFAHEALGMFDRMTYENVRPN 310
EA+ + + M ++RPN
Sbjct: 454 KLMQEAVNLIESM---HLRPN 471
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 162/378 (42%), Gaps = 83/378 (21%)
Query: 15 KNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH 74
+N F + +S I + N K +S+ L+ V+A ++T D +++ + C + H
Sbjct: 19 ENKFTSQLSQKTILDLLNT-KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVK-CYANPH 76
Query: 75 F--IDYTILVFPQMQEPNVFVYHAF--SSLRH--PLQAIAFYLYMLRAEV---------- 118
F +++ + VF + PNVFV++ L++ P +AI Y M+ A
Sbjct: 77 FSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTL 136
Query: 119 -----------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------- 158
VH V K G S V +++A + Y + +RR+
Sbjct: 137 FKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDV 196
Query: 159 ------------------SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAW 195
++ LF M ++ +WN M+ A+ A LFN+M
Sbjct: 197 ICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEK 256
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
+ SW+ MI Y + ++EAL+ FN ++ + +++VL+ACA+LGALD GR I
Sbjct: 257 NEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIH 316
Query: 256 IY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
Y C L + VF K+ +K + WN++ L +HG A
Sbjct: 317 AYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAE 376
Query: 294 EALGMFDRMTYENVRPNG 311
+A+ +F +M + RPNG
Sbjct: 377 DAIELFFKMQKQKFRPNG 394
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ L +F KM ++ +W MI + + +A++ F K +K
Sbjct: 333 ALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRP 392
Query: 231 DQVTMATVLSACAHLGALDLG 251
+ +T+ VLSACAH G +D G
Sbjct: 393 NGITLLGVLSACAHSGMVDEG 413
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 64/312 (20%)
Query: 58 DCFLAKQFISFCTSRFHFIDYTILVFPQM-QEPNVFVYHAF-----SSLRHPLQAIAFY- 110
D L +FI C+S F Y +F + P++++Y+ SS HP +I Y
Sbjct: 9 DNLLLSRFIHACSS-LGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYN 67
Query: 111 --------------LYMLRAEVLLTTV------HGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ L+A +++ H Q + G S + V TA V YS
Sbjct: 68 NIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSS-- 125
Query: 151 KFFESRRV--SRRLFD--EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
F S + +R++FD M A WN M++ YA+ +L LF +MP ++ SWT
Sbjct: 126 --FGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWT 183
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL 261
+IT Y+Q + +A+ F + + D++ M L+ACA LGAL+LG I+ Y L
Sbjct: 184 ALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRL 243
Query: 262 G-----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
G +L VF + K ++ W ++ LA+HG EAL M
Sbjct: 244 GLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEM 303
Query: 299 FDRMTYENVRPN 310
F RM V+PN
Sbjct: 304 FSRMERARVKPN 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ ++ +F M I +WTTMI + + EAL+ F++ +++
Sbjct: 254 NALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVK 313
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ +T +LSAC+H+G + GR
Sbjct: 314 PNDITFIAILSACSHVGLVQTGR 336
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAY 181
+H + + G ++ ++V Y +RRV FDE +WN MID Y
Sbjct: 93 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRV----FDETAAYADVVSWNVMIDGY 148
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ +L LF+ MP ++ SWT +I +Y+Q KQ EA++ F + + G D V +
Sbjct: 149 VKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALL 208
Query: 237 TVLSACAHLGALDLG---------RG-----------IQIY--CRSLGRSLLVFFKLREK 274
+VLSAC LG +DLG RG I +Y C S+ ++L VF + +K
Sbjct: 209 SVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQK 268
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ W ++ A+HG EA+ +F RM ENV PN
Sbjct: 269 SIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPN 304
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 25/238 (10%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYT 79
S S ++ + + + + YA +V N +D ++ ++ F +
Sbjct: 108 ASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGDLARARELFDVMPGR 167
Query: 80 ILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQ 139
+V M V A++ ++ P +AI + M +V G + S+
Sbjct: 168 NVVSWTM------VIGAYAQMKQPEEAIEVFRRM---QVEGIEPDGVALLSVLSA--CGD 216
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
+VD + ++F + R L E+P N +ID Y + + +F M
Sbjct: 217 LGVVDLGEWVHRFV----LRRGLCQEIP-----LMNAIIDMYVKCGSVKKALEVFEGMEQ 267
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
I +WTTMI ++ + EA++ F + +K + +T VLS C+H+G DLGR
Sbjct: 268 KSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGR 325
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 43/299 (14%)
Query: 49 TIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVF-VYHAFSSLR-HPLQ 105
+++K + CF A+Q + R + + Y ++ + N+ + F +R H L+
Sbjct: 103 SLIKRYVDNGCFECARQLFDEMSDR-NVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161
Query: 106 AIAFYLYMLRAEV-------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV 158
F + L L +VH Q+ K+ SS + + A++D Y N+ ++
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNEL----KL 217
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R++FD E+ +WNT+I YA++ EL LFN++P DI SW ++I+ Y+QN +
Sbjct: 218 ARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDY 277
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
F + D+VT+ ++SA A +GALD GR I
Sbjct: 278 VTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSAL 337
Query: 256 --IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+YC+ S+ R+ ++F ++ EK++ W ++ A HGF ++AL +F M E +PN
Sbjct: 338 IDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPN 395
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +FN++P D+ +WTTMIT ++ + +AL+ F+ ++ T
Sbjct: 335 SALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFS-VMQAETK 393
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ VT +VL+AC+H G +D G++I+ R + E + + + + L
Sbjct: 394 PNDVTFVSVLAACSHSGLVD--EGLKIFSSMKKRYSI------EPGVEHYGCLVDLLCRS 445
Query: 290 GFAHEALGMFDRMTYENVR 308
G +A+G+ ++M E R
Sbjct: 446 GRLLDAIGVIEKMPMEPSR 464
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 149/329 (45%), Gaps = 56/329 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C++ K+L+ ++A I++ D L ++ +S + IDY LVF Q+ +P++F
Sbjct: 27 LQNCNNFKQLKQIHARIIRFRLTHDQLLIRKLCQI-SSSYGKIDYASLVFDQLNDPDIFT 85
Query: 94 YH----AFSSLRHPLQAIAF---------------YLYMLRAEVLLTTV------HGQVW 128
++ A+++ P ++I Y +++ A + + HG
Sbjct: 86 WNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAI 145
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K GF S V+VQ M++ Y K ++FD+M R +W T+I +L
Sbjct: 146 KMGFWSDVYVQNNMMNLYF---KIGGDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLD 202
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F ++P+ ++ SWT MI Y +N +A D F + ++ T+ +++ AC
Sbjct: 203 TAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACT 262
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LG+L LGR + + C SL ++ VF + +NL WN+
Sbjct: 263 DLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNLATWNT 322
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + +HGF +E L +F M V P+
Sbjct: 323 MLTSFGVHGFGNEVLDLFKEMEKAGVVPD 351
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H KNGF F+ TA+VD YS S + ++F M R ATWN
Sbjct: 273 MHDFALKNGFELGPFLGTALVDMYSKCG----SLDAAVKVFGLMEVRNLATWN------- 321
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
TM+TS+ + E LD F + +K+G D +T VLSAC
Sbjct: 322 -------------------TMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAITFVGVLSAC 362
Query: 243 AHLGALDLGR 252
+ L+LG+
Sbjct: 363 VQINDLELGQ 372
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
+ V TA+VD Y+ +SR FDE+ + +WNTMID + R ++ +F+
Sbjct: 48 LMVGTALVDMYAKCGHV----ELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFD 103
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+MP + SWT +I + + F EAL+ F K + S D+VT+ TVLSACA+LGAL L
Sbjct: 104 EMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGL 163
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G + Y C ++ + VF K+ E+ L+ WNSI LA
Sbjct: 164 GLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAA 223
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
+GF EAL FD M + +PN
Sbjct: 224 NGFTEEALEHFDLMQKQGFKPN 245
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y+R LA +F KM + SW ++I + N EAL+ F+ +K G
Sbjct: 184 NSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFK 243
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ V+ L+AC+H G +D G
Sbjct: 244 PNDVSFTGALTACSHTGLVDEG 265
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 43/299 (14%)
Query: 49 TIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVF-VYHAFSSLR-HPLQ 105
+++K + CF A+Q + R + + Y ++ + N+ + F +R H L+
Sbjct: 168 SLIKRYVDNGCFECARQLFDEMSDR-NVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226
Query: 106 AIAFYLYMLRAEV-------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV 158
F + L L +VH Q+ K+ SS + + A++D Y N+ ++
Sbjct: 227 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNEL----KL 282
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R++FD E+ +WNT+I YA++ EL LFN++P DI SW ++I+ Y+QN +
Sbjct: 283 ARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDY 342
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
F + D+VT+ ++SA A +GALD GR I
Sbjct: 343 VTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSAL 402
Query: 256 --IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+YC+ S+ R+ ++F ++ EK++ W ++ A HGF ++AL +F M E +PN
Sbjct: 403 IDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPN 460
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +FN++P D+ +WTTMIT ++ + +AL+ F+ ++ T
Sbjct: 400 SALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFS-VMQAETK 458
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ VT +VL+AC+H G +D G++I+ R + E + + + + L
Sbjct: 459 PNDVTFVSVLAACSHSGLVD--EGLKIFSSMKKRYSI------EPGVEHYGCLVDLLCRS 510
Query: 290 GFAHEALGMFDRMTYENVR 308
G +A+G+ ++M E R
Sbjct: 511 GRLLDAIGVIEKMPMEPSR 529
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER-KFATWNTMIDAY 181
VHG K G V ++ A++ YS + ++RR+ FD+ E +WN+MI Y
Sbjct: 292 VHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRI----FDDGGELLDLISWNSMISGY 347
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
R AE+LF MP D+ SW+ MI+ Y+Q++ F EAL F + + G D+ +
Sbjct: 348 LRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALV 407
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
+ +SAC HL LDLG+ I Y C + +L VF+ + EK
Sbjct: 408 SAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEK 467
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ LA++G ++L MF M PN
Sbjct: 468 GVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPN 503
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/402 (20%), Positives = 153/402 (38%), Gaps = 116/402 (28%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFI--DYTILV 82
+++ + + L+ C + + + + + T D + A + I+F + + Y++ +
Sbjct: 1 MKVSTLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRI 60
Query: 83 FPQMQEPNVFVYHAFSSLR-----HPLQAIAFYLYMLRAE---------VLLTT------ 122
F ++ PN F ++ P QA+ Y L + +LL
Sbjct: 61 FNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVS 120
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------ 158
+H +GF V+V+ +++ Y+ +RRV
Sbjct: 121 EFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180
Query: 159 ---------SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAW--DIRSWTT 202
+ R+F+ MPER N+MI + R A +FN + D+ SW+
Sbjct: 181 YVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------G 253
M++ Y QN+ EAL F + K SG D+V + + LSAC+ + +++GR G
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVG 300
Query: 254 IQIY---------------------------------------------CRSLGRSLLVF 268
++ Y C S+ + ++F
Sbjct: 301 VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLF 360
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + EK+++ W+++ A H EAL +F M VRP+
Sbjct: 361 YSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPD 402
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+ID Y + + +F M + +W +I + N ++L+ F KK+GT
Sbjct: 443 TLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVP 502
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+++T VL AC H+G ++ G R S++ K+ E N+ + + + L G
Sbjct: 503 NEITFMGVLGACRHMGLVNDG-------RHYFNSMIHEHKI-EANIKHYGCMVDLLGRAG 554
Query: 291 FAHEALGMFDRM 302
EA + D M
Sbjct: 555 LLKEAEELIDSM 566
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE-MPERKFATWNTMIDAY 181
+H + + G ++ ++V Y +RRV FDE +WN MID Y
Sbjct: 97 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRV----FDETAASADVVSWNVMIDGY 152
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ +L LF+ MP ++ SWT +I +Y+Q KQ EA++ F + + G D V +
Sbjct: 153 VKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALL 212
Query: 237 TVLSACAHLGALDLG---------RG-----------IQIY--CRSLGRSLLVFFKLREK 274
+VLSAC LG +DLG RG I +Y C S+ ++L VF + +K
Sbjct: 213 SVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQK 272
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ W ++ A+HG EA+ +F RM ENV PN
Sbjct: 273 SIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPN 308
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
+VD + ++F + R L E+P N +ID Y + + +F M
Sbjct: 222 GVVDLGEWVHRFV----LRRGLCQEIP-----LMNAIIDMYVKCGSVKKALEVFEGMEQK 272
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
I +WTTMI ++ + EA++ F + +K + +T VLS C+H+G DLGR
Sbjct: 273 SIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGR 329
>gi|147772239|emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]
Length = 901
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 143/323 (44%), Gaps = 61/323 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN--- 90
LK C ++++L + A ++ + F+A + + ++ + ++YTIL+F + P+
Sbjct: 379 LKTCRNMRQLSQIQAYLIISGLFRKPFVASKVLKV-SADYADVNYTILIFRSIDSPDTVC 437
Query: 91 ---VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV---------------------HGQ 126
V ++ SS+ H QA+ FY LR + + HGQ
Sbjct: 438 VNAVIKAYSISSVAH--QALVFYFETLRNGFMCNSFTFPPLFSCCRKXGCVEYGEKFHGQ 495
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
KNG + + VQ +MV Y + +V F EM +R +WN++IDAYA+L
Sbjct: 496 AIKNGVDNVLDVQNSMVHMYGCCGVVEXAEKV----FGEMSKRDLVSWNSIIDAYAKLGH 551
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L LF+ MP + SW M+ Y + AL F + +G + TM +VL+A
Sbjct: 552 LVLAHRLFDAMPERNAVSWNIMMGGYLKGGNPGCALKLFREMANAGLRGGETTMVSVLTA 611
Query: 242 CAHLGALDLGRGIQ--------------------IY--CRSLGRSLLVFFKLREKNLLCW 279
C L GR I +Y C + + +V+ ++ + NL+CW
Sbjct: 612 CCRSARLKEGRSIHGVLIRTFLKSSLILDTALIDMYSKCERVDVARVVYDRMTKXNLVCW 671
Query: 280 NSITEALAIHGFAHEALGMFDRM 302
N++ IHG A + L +F+ M
Sbjct: 672 NAMILGHCIHGNAEDGLKLFEEM 694
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 44/251 (17%)
Query: 89 PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF--VQTAMVDNY 146
PN FVY PL A +R ++ ++H K+GF + ++T+++D Y
Sbjct: 57 PNQFVY--------PLVLRAACAVDVR---IVRSIHSHACKSGFCGYEYDVIRTSLLDCY 105
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIRSWT 201
S ++R+ LFD + ER +W ++ YAR + +LF +M D+ +W
Sbjct: 106 SRHAMMADARK----LFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERMTERDVAAWN 161
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI----Y 257
+IT SQN+ F EA+ F + +G + T++ VLSAC HLG L +G+ I
Sbjct: 162 AIITGCSQNRLFAEAVGIFGRMVGTGLRPNATTISCVLSACGHLGMLKIGKLIHCCAWRT 221
Query: 258 CRSLGRSLL------------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
C G S+L +F+++ +++L WNS+ LA+HG + A+ +F
Sbjct: 222 CVGFGSSVLNGLIDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVF 281
Query: 300 DRMTYENVRPN 310
+ M E V P+
Sbjct: 282 NEMRGEGVEPD 292
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + L +F ++ + +W ++I + + + A+ FN+ + G
Sbjct: 231 NGLIDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVFNEMRGEGVE 290
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D +T +L+AC H G +D G
Sbjct: 291 PDVITFVGLLNACTHGGFVDEG 312
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 83/328 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+ C+S+K L ++A ++ + + +A + ++FC S + Y L+F QM+ P
Sbjct: 11 LQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTE 70
Query: 93 VYH----AFSSLRHPLQAIAFYLYM----------------------LRAEVLLTTVHGQ 126
++ F+ P+ AI FY M ++AE VHG
Sbjct: 71 AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGS 130
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V + G+ + V V T +V YS S ++R++FD+MP R WN
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSA----MGSVCIARQVFDKMPARDLVAWN----------- 175
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
MI+ +SQ +EAL +N+ + D T+ ++S+CAHLG
Sbjct: 176 ---------------AMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLG 220
Query: 247 ALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
AL++ G+Q++ C SL +++L+F +++ K++ WNS+
Sbjct: 221 ALNI--GVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSM 278
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+HG EA+ F +M ++PN
Sbjct: 279 IVGYGVHGRGSEAIYCFQQMLEARIQPN 306
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 19/226 (8%)
Query: 34 LKKCSSIK-ELEC--VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C IK E +C V+ ++++ + D + + C S + VF +M +
Sbjct: 112 LKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVK-CYSAMGSVCIARQVFDKMPARD 170
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ ++A S F L E L T + Q+ F ++ + ++
Sbjct: 171 LVAWNAMIS--------CFSQQGLHQEALQT--YNQMRSENVDIDGFTLVGLISSCAHLG 220
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
++ R + ++ N +ID YA+ L +F++M DI +W +MI
Sbjct: 221 ALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIV 280
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
Y + + EA+ F + ++ + VT +L C+H G + G
Sbjct: 281 GYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEG 326
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACA 243
A+LLF++M +W ++I ++Q+ +A+ +N+ S + D T + VL AC
Sbjct: 57 AQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACE 116
Query: 244 HLGALDLGRGIQ------------IYCRSLGR----------SLLVFFKLREKNLLCWNS 281
+ A + + I C +L + + VF K+ ++L+ WN+
Sbjct: 117 RIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNA 176
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + G EAL +++M ENV +G
Sbjct: 177 MISCFSQQGLHQEALQTYNQMRSENVDIDG 206
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 146/339 (43%), Gaps = 61/339 (17%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
P + R H I+ L+ C ++ +YA I++ + + D F+ + + C S + I Y
Sbjct: 25 PKNTPNRRRHFIS-LLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVC-SNLNSIGY 82
Query: 79 TILVFPQMQEPNVFVYHAF----------------------SSLRHPLQAIAFYLYMLRA 116
+F Q PNV++Y A SSL A+ L
Sbjct: 83 ASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGC 142
Query: 117 EVLLTT---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+ L VH QV K G SS ++ +++ Y F ++RRV FDEMPER
Sbjct: 143 HLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRV----FDEMPERDVVA 198
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
MI+ Y F+ D WT MI +N + AL+ F ++ ++V
Sbjct: 199 STVMINYY-------FDH-GIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEV 250
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ VLSAC+ LGAL LGR ++ Y C + + VF ++
Sbjct: 251 TIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQM 310
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+EKN++ +NS+ A+HG + EA+ +F + + P+
Sbjct: 311 KEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPS 349
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+I+ Y+R ++ +F +M ++ ++ +MI ++ + + EA++ F K G
Sbjct: 288 GALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFT 347
Query: 230 SDQVTMATVLSACAHLGALDLG 251
VT VL+AC+H G +LG
Sbjct: 348 PSSVTFVGVLNACSHGGLAELG 369
>gi|147767785|emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]
Length = 967
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 21/196 (10%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K+GF VF TA+VD Y+ ++R+ FDEM R TWN+MI YA
Sbjct: 589 LHTHFVKSGFGCDVFALTALVDMYAKLGLL----SLARKQFDEMTVRDVPTWNSMIAGYA 644
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
R +L LF MPA ++ SWT MI+ Y+QN Q+ +AL F +++ ++VT+A
Sbjct: 645 RCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLA 704
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+VL ACA+LGAL++G I++Y R G +F KNL N++ E A G +A
Sbjct: 705 SVLPACANLGALEVGERIEVYARGNG-----YF----KNLYVSNALLEMYARCGRIDKAW 755
Query: 297 GMFDRMT--YENVRPN 310
G+F+ + E P+
Sbjct: 756 GVFEEIDGRREGAAPD 771
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 43/251 (17%)
Query: 95 HAFSSLR--HPLQAI--AFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
HA + LR HP ++ A + LR L +H + + G +S V +++ Y
Sbjct: 60 HALALLRRIHPSLSLNAAAKIPHLRG-TLGPQLHSVIVRAGLASDAHVSASLIQTY---- 114
Query: 151 KFFESRRVS--RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTM 203
F RV+ R +FD+ ++ WN MI Y + L LF+ MPA ++ SWTT+
Sbjct: 115 --FSCGRVASARSVFDQTTDKDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTV 172
Query: 204 ITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLG---------RG 253
I +Y+Q KQ EA++ F + + + G D V + +VLSAC LGA+DLG RG
Sbjct: 173 IGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRG 232
Query: 254 -----------IQIYCRSLG---RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
I +Y + LG +++ VF + +K+++ W ++ A+HG EA+ MF
Sbjct: 233 LCWQIPLMNAIIDMYVK-LGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMF 291
Query: 300 DRMTYENVRPN 310
RM ENV PN
Sbjct: 292 RRMEMENVAPN 302
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y +L A +F M + +WTT+I ++ + EA++ F + +
Sbjct: 241 NAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVA 300
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ VT +LSAC+H+G DLGR
Sbjct: 301 PNDVTFLAILSACSHVGLTDLGR 323
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 49/265 (18%)
Query: 79 TILVFPQMQE----PNVFVYHAFSSL--RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF 132
+L+F +MQE P+VF S+ +H + + VH + G
Sbjct: 219 AVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRF------------VHLHMVVTGI 266
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAEL 187
V A++D Y+ + ++ +FD+M ++ +W MI+AYA A
Sbjct: 267 EIDSIVTNALMDMYAKCGNL----KCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALE 322
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
FN+MP ++ SW ++I + Q + EA+D F + SG ++ T+ +LS+C+H+G
Sbjct: 323 FFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGD 382
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L LG+ Y C +L ++ VFF + EKN + WN I A
Sbjct: 383 LALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGA 442
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
LA+HG+ EA+ MF++M V P+
Sbjct: 443 LALHGYGKEAIEMFEKMQASGVCPD 467
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 133/321 (41%), Gaps = 78/321 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+ +C S+K+L+ V+A I+ + +S + + + Y +F Q+ +PN F+
Sbjct: 43 IDQCISLKQLKHVHAQIILHGLATQVLTLGKLVS-SSVQLRDLRYAHKLFDQIPQPNKFM 101
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLL---------------------TTVHGQVW 128
++ +S+ P++++ Y M+ +L VH Q +
Sbjct: 102 FNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSF 161
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL 188
K G S VQ A+++ Y +RRV FD++ ER +WN+MI+ Y+++
Sbjct: 162 KLGMGSHACVQNAILNIYVACGLITSARRV----FDDISERTLVSWNSMINGYSKMG--- 214
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
RS EA+ F + ++ G D T+ +LS G
Sbjct: 215 ---------RS--------------EEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNF 251
Query: 249 DLGR---------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
DLGR GI+I C +L + VF ++ +K+++ W + A
Sbjct: 252 DLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAY 311
Query: 287 AIHGFAHEALGMFDRMTYENV 307
A HG AL F++M +NV
Sbjct: 312 ANHGLIDCALEFFNQMPGKNV 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
A++ + S+ ++ +FD N +ID YA+ L +F MP
Sbjct: 371 VAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE 430
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ SW +I + + + +EA++ F K + SG D++T +LSAC+H G +D G+
Sbjct: 431 KNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ 488
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 81/213 (38%), Gaps = 52/213 (24%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L VH Q+ +G ++ V +V S+ R + +LFD++P+
Sbjct: 52 LKHVHAQIILHGLATQVLTLGKLVS----SSVQLRDLRYAHKLFDQIPQPN--------- 98
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+ +FN + I YS + ++L + + G +Q T+ VL
Sbjct: 99 ------KFMFNHL-----------IKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVL 141
Query: 240 SACA-----------HLGALDLGRG-----------IQIYCRSLGRSLLVFFKLREKNLL 277
ACA H + LG G I + C + + VF + E+ L+
Sbjct: 142 KACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLV 201
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ + G + EA+ MF M + P+
Sbjct: 202 SWNSMINGYSKMGRSEEAVLMFREMQEVGLEPD 234
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 62/334 (18%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISF--CTSRFHFIDYTILVFPQMQEPNVF 92
+KC+++ +L+ ++A I++ N + +S ++ F Y +F + N F
Sbjct: 13 QKCNTLTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTF 72
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT-------------------------V 123
+++ + R PL A++ YL ML+ V + V
Sbjct: 73 MHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLV 132
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V K G + +V +A ++ YS S + +R LFDE + M+D Y +
Sbjct: 133 HGHVVKFGLRNDPYVVSAFIEFYSVSREV----DTARVLFDETSYKDVVLGTAMVDGYGK 188
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ + +F+KMP + SW+ M+ +YS+ F+E L F + + GT ++ + TV
Sbjct: 189 MGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTV 248
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
L+ACAHLGAL G + Y C + +L VF + +K+
Sbjct: 249 LTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDA 308
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A++G A ++L +F +M +PN
Sbjct: 309 GAWNAMISGEALNGDAGKSLQLFRQMAASRTKPN 342
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 156/372 (41%), Gaps = 88/372 (23%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC----TSRFHFIDYTI 80
I IH + L C +++ L ++ +K + D + + I C + + +
Sbjct: 3 IAIHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLL 62
Query: 81 LVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
L FP EP+ F+++ +S P ++A ++ M+R +
Sbjct: 63 LCFP---EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENF 119
Query: 123 --------VHGQVWKNGFSSPVFVQTAMVDNYS------YSNKFFESRRV---------- 158
+H Q K+G S +FV T ++ Y ++ K F+
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179
Query: 159 -----------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
+R +FD+M R +WN M+ Y + EL +F++MP D SW+T
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----- 257
MI + N F E+ F + +++G ++V++ VLSAC+ G+ + G+ + +
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 258 -----------------CRSLGRSLLVFFKLREKN-LLCWNSITEALAIHGFAHEALGMF 299
C ++ + LVF ++EK ++ W S+ LA+HG EA+ +F
Sbjct: 300 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF 359
Query: 300 DRMTYENVRPNG 311
+ MT V P+G
Sbjct: 360 NEMTAYGVTPDG 371
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K G+S V V A++D YS ++R +F+ M E++
Sbjct: 291 LHGFVEKAGYSWIVSVNNALIDMYSRCGNV----PMARLVFEGMQEKRC----------- 335
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
I SWT+MI + + Q EA+ FN+ G D ++ ++L AC
Sbjct: 336 --------------IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHAC 381
Query: 243 AHLGALDLGR 252
+H G ++ G
Sbjct: 382 SHAGLIEEGE 391
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 132/272 (48%), Gaps = 60/272 (22%)
Query: 93 VYHAFSSLRHPLQAIAFY-LYMLRAEVLLTTV-------------------HGQVWKNGF 132
+ HA ++ RHPL F + LR LLT + H + K+G
Sbjct: 56 LLHALAAARHPLLLPCFARAHRLR---LLTPLSFTLLFSSPSSSTTTTRLAHALLSKSGH 112
Query: 133 ---SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER-KFATWNTMIDAYARL---- 184
S ++ +A+V +Y+ S ESRRV FDE+P A N ++ AYAR
Sbjct: 113 AASSGDPYLASALVASYARSGHLAESRRV----FDELPPHSDAAARNALLSAYARCGRVD 168
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSAC 242
AE LF MP ++ SWT M++ Y+QN + EA+ F + + G ++VT+++VL AC
Sbjct: 169 DAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPAC 228
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC-W 279
A +GAL LGR ++ Y C S+ R+ +VF + ++ LC W
Sbjct: 229 AAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSW 288
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
NS+ A A+HG E LG+F ++ +P+G
Sbjct: 289 NSMIMAFAVHGLWREVLGLFHKLRMTGAKPDG 320
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N +++ YA R A ++F + D+ SW +MI +++ + +RE L F+K + +G
Sbjct: 257 NALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGA 316
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
D +T V+ AC H G +D G+
Sbjct: 317 KPDGITFVGVILACTHGGLVDEGK 340
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 162/365 (44%), Gaps = 86/365 (23%)
Query: 27 IHIIANQLKKCSSIKELECVYA-TIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85
+HII N C ++K L+ ++A +++++ F+ + + SRF DY VF +
Sbjct: 6 LHIIHN----CKTLKSLKSIHARLLIESSVASSEFVINKLLRL-YSRFGATDYAHKVFDE 60
Query: 86 MQEPNVFVY----HAFSSLRHPLQAIAFYLYM---------------LRAEVLLTTVHGQ 126
+ +PN +++ H + R +A + ++ M L+A LT G
Sbjct: 61 ITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGG 120
Query: 127 VWKNGFSSPVFVQTAMV------------DNYSYSNKFFE---SRRV------------- 158
GF+ + +V D + KFF+ R V
Sbjct: 121 QAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKA 180
Query: 159 -----SRRLFDEMPERKFATWNTMIDAYARL------AELLFNKMPAWDIRSWTTMITSY 207
++ LFD MP + A+WN M+ Y + A LF++MP ++ +W+TMI Y
Sbjct: 181 GDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGY 240
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------- 253
++N Q +AL+ F + K+ D+ + ++SAC+ LG +D
Sbjct: 241 ARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDL 300
Query: 254 ------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
I +Y C S+ ++L +F K+LLC++++ ALA HG +A+ +FD+M
Sbjct: 301 RVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRA 360
Query: 306 NVRPN 310
N++P+
Sbjct: 361 NIKPD 365
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+ ++ID YA+ + +F D+ ++TMI + + + R+A+ F+K +++
Sbjct: 302 VFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRAN 361
Query: 228 TGSDQVTMATVLSACAHLGALDLGR 252
D VT VL+AC H G +D GR
Sbjct: 362 IKPDSVTFLGVLTACNHGGLVDEGR 386
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +N F+ +++ ++ Y+ +++ LF M R TM+ Y
Sbjct: 247 VHDLIIENNFALDPHLESGLISLYAGCG----CMDMAKELFTNMSSRNLVVSTTMVSGYL 302
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ A L+FN+M D+ W+ MI+ Y+++ Q +EAL FN+ + G D+VTM +
Sbjct: 303 KVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLS 362
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V+SACAHLG LD + I ++ C L + VF K++ +N
Sbjct: 363 VISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRN 422
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W S+ A AIHG A+ AL F +M ENV PN
Sbjct: 423 VISWTSMINAFAIHGDANSALNYFHQMKEENVEPN 457
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 87/243 (35%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K F F+QT ++ Y K E+R V FD+M R TW+TMI+ Y
Sbjct: 146 IHGVLAKLDFYKDPFLQTGLMGMYVGCGKILEARLV----FDKMSYRDVVTWSTMINGYY 201
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
Q F +AL F + + S D++ ++T++SAC
Sbjct: 202 --------------------------QGGHFDDALQLFEEMRSSNVEPDKMVLSTIISAC 235
Query: 243 AHLGALDLGRGIQIY--------------------------CRSLGRSL----------- 265
A A +LG G +++ C + + L
Sbjct: 236 AR--AKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCMDMAKELFTNMSSRNLVV 293
Query: 266 ------------------LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L+F ++ EK+L+CW+ + A EAL +F+ M + +
Sbjct: 294 STTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLGI 353
Query: 308 RPN 310
P+
Sbjct: 354 EPD 356
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 142/326 (43%), Gaps = 79/326 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVFV 93
K+CS++K+L ++A+I++ + + F+ + I FC H ++Y ++VF +++ + F+
Sbjct: 63 KQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFL 122
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQVW 128
++ F R L A FY ML + L +H +
Sbjct: 123 WNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNIL 182
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL 188
K G S V+V+ ++ Y + ++R LFDE+P+ WN +ID +
Sbjct: 183 KLGLDSHVYVRNTLIHMYGR----LKDVNIARNLFDELPKTDLVAWNAVIDCHVSCG--- 235
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
+ EALD F + +SG D+ T+ +SAC+ LGAL
Sbjct: 236 -----------------------MYNEALDLFVQMLQSGVEPDEATLVVTISACSALGAL 272
Query: 249 DLGRGIQIYCRS--LGRSLLVFFKL-------------RE-------KNLLCWNSITEAL 286
D GR + + S G+++ VF L RE KN++ WN++ L
Sbjct: 273 DCGRWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGL 332
Query: 287 AIHGFAHEALGMFDRMTYENVR-PNG 311
A HG A +AL +F M E V P+G
Sbjct: 333 ATHGDAEDALTLFSNMLAERVETPDG 358
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 30/195 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
+ M+D Y K E R +R FD MP R +WN+MID YA++ E+ +FBKM
Sbjct: 211 SIMID--GYGKKMGEVNR-ARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQ 267
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
++ SW+ MI Y+ ++ +EAL+ F + G D+V++ +SAC+ LGALD GR I
Sbjct: 268 KNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWI 327
Query: 255 QIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
+Y C S + +F + E+N++ WN + L ++GF
Sbjct: 328 HLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFG 387
Query: 293 HEALGMFDRMTYENV 307
EAL F +M E +
Sbjct: 388 KEALECFXQMEMERI 402
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 56/298 (18%)
Query: 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLR 101
++A ++ TN D F A + + S+ ++Y LVF Q+ +PN F+ + ++
Sbjct: 30 IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89
Query: 102 HPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNGFSSPVFVQT 140
P +A+ FY M + +L V G+ K GF VFV
Sbjct: 90 TPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
++ Y + +R V FD E+ +WN+M+ Y E+ +F++MP
Sbjct: 150 GLISMYCRCGETGWARAV----FDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPER 205
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTK---KSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ SW+ MI Y + + N+ + S D V+ +++ A +G +++ R
Sbjct: 206 DVVSWSIMIDGYGKK------MGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAR 259
Query: 253 GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
I F K+ +KN++ W+ + + A H + EAL +F +M + ++P+
Sbjct: 260 EI-------------FBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPD 304
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 53/154 (34%), Gaps = 44/154 (28%)
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V A S L Q +LYM R +LL V VQTA+VD Y
Sbjct: 309 VGAVSACSQLGALDQGRWIHLYMKRNRMLLDIV--------------VQTALVDMYLKCG 354
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210
E+R + FN MP ++ SW MI N
Sbjct: 355 SXDEARXI------------------------------FNSMPERNVVSWNVMIVGLGMN 384
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+EAL+ F + + D + VL AC+H
Sbjct: 385 GFGKEALECFXQMEMERIPMDDLLFLGVLMACSH 418
>gi|255572686|ref|XP_002527276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533369|gb|EEF35120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 144/328 (43%), Gaps = 57/328 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C ++ ++A I++ N + D F+ + + C S I+Y +F + PNV++
Sbjct: 144 LQSCRHSNQITPIHAKIIRNNYHNDAFVVFELLRVC-SNLSSINYASKIFSFTENPNVYL 202
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVW 128
Y A F + I Y M+ ++ VH QV
Sbjct: 203 YTALIDGFVLSGSFISGIHLYYQMINLSIVPDNYVITSVLEACGFQLALKQGIQVHCQVL 262
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----AR 183
K G SS ++ ++ Y S + + RLFDEMPER MI++Y +
Sbjct: 263 KLGLSSKRLMRLKLMKFYGKCG----SLKDAERLFDEMPERDVVASTIMINSYFEHGLIQ 318
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A +FN + D WT +I +N + AL+ F + ++ ++VT+ VLSAC+
Sbjct: 319 EAIRVFNLTKSKDTVCWTAVIDGLVRNGEMNRALEVFREMQREDVRPNEVTIVCVLSACS 378
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LG L+LGR + Y C + + VF +++E+N++ +NS
Sbjct: 379 QLGTLELGRWVHSYMGKYGIGINHFVGGALINMYSRCGDIDEAWRVFEEMKERNVITYNS 438
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRP 309
+ ++HG + EA+ +F MT + + P
Sbjct: 439 MIVGFSLHGKSSEAIELFRGMTKQGLEP 466
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 114/274 (41%), Gaps = 86/274 (31%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------- 158
H Q+ K GF + +QT ++D Y+ ++RV
Sbjct: 33 HCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYV 92
Query: 159 --SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWT---------- 201
+R LFD M ER +WN+MI Y +L A L+F+ P D+ SW
Sbjct: 93 EEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSK 152
Query: 202 ----------------------TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
TMI++Y Q +F A+ F + + +VTM ++L
Sbjct: 153 QLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLL 212
Query: 240 SACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNLL 277
SACAHLGALD+G I Y R+ LG +L+ VF L KN+
Sbjct: 213 SACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIF 272
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
CWNSI L ++G EA+ F M E ++P+G
Sbjct: 273 CWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDG 306
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + L +F+ + +I W ++I N + EA+ AF +K G
Sbjct: 244 NALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIK 303
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D VT +LS C+H G L G+ R L V+ E + + + + L
Sbjct: 304 PDGVTFVGILSGCSHSGLLSAGQ------RYFSEMLGVYG--LEPGVEHYGCMVDLLGRA 355
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G+ EAL + M ++PN
Sbjct: 356 GYLKEALELIRAMP---MKPN 373
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 67/367 (18%)
Query: 9 IITSFKKNSFPTSV----SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQ 64
I+ ++N+ S S +R I + LK C S + L +A IV + + ++
Sbjct: 5 IVPILRENATAISAIGRSSRVRQQFIFSVLKSCVSFRNLAKTHAQIVVSGFSQKNYILNH 64
Query: 65 FISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV-- 118
+S S F + VF + P+ V++ + + ++I + M A V
Sbjct: 65 LLSLYIS-FGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA 123
Query: 119 -------LLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKF--FESRR 157
LL+ +HG+V NG+ S ++V+T +++ Y+ F+ +R
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+ LFDEMP+ WN+++ Y R + +F++MP ++R+WT M+ ++QN Q
Sbjct: 184 -ALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQ 242
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
+ AL F++ +++G DQV + LSACA LG L LG+ I Y
Sbjct: 243 CKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVS 302
Query: 258 -----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM---T 303
C ++ + +F ++ ++N + W+SI A G EA+ +F M
Sbjct: 303 LNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSG 362
Query: 304 YENVRPN 310
VRP+
Sbjct: 363 QNEVRPD 369
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 19/144 (13%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I YA LA LF ++P + SW+++IT +++ EA+ F SG
Sbjct: 305 NALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQN 364
Query: 230 S---DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
D++T L+AC+H G + GI+++ +S+ ++ V ++ + + + L
Sbjct: 365 EVRPDEITFIGALTACSHAGLIS--DGIRLF-QSMHKTFGVIPQIEH-----YGCMVDLL 416
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
+ G EAL + + M ++PN
Sbjct: 417 SRAGLLTEALSLIESMP---MKPN 437
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 127/282 (45%), Gaps = 77/282 (27%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV------------- 118
I YT +F + +P+ F+++ A S+ L A+ FY ML + +
Sbjct: 58 IAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKA 117
Query: 119 --------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L T VH V+ +G++S FVQ A+V Y+ S + RV+R++FDEM
Sbjct: 118 CADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSC----TPRVARKVFDEM---- 169
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
P I +W +MI+ Y QN EA++ FNK ++SG
Sbjct: 170 ----------------------PQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEP 207
Query: 231 DQVTMATVLSACAHLGALDL---------GRGIQI-------------YCRSLGRSLLVF 268
D T +VLSAC+ LG+LDL G GI++ C +GR+ VF
Sbjct: 208 DSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVF 267
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ E N++ W ++ +HG+ EA+ +F RM V PN
Sbjct: 268 DSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPN 309
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 83/328 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+ C+S+K L ++A ++ + + +A + ++FC S + Y L+F QM+ P
Sbjct: 11 LQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTE 70
Query: 93 VYH----AFSSLRHPLQAIAFYLYM----------------------LRAEVLLTTVHGQ 126
++ F+ P+ AI FY M ++AE VHG
Sbjct: 71 AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGS 130
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V + G+ + V V T +V YS ++R++FD+MP R WN
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGLVC----IARQVFDKMPARDLVAWN----------- 175
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
MI+ +SQ +EAL +N+ + D T+ ++S+CAHLG
Sbjct: 176 ---------------AMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLG 220
Query: 247 ALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
AL++ G+Q++ C SL +++L+F +++ K++ WNS+
Sbjct: 221 ALNI--GVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSM 278
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+HG EA+ F +M ++PN
Sbjct: 279 IVGYGVHGRGSEAIYCFQQMLEARIQPN 306
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 19/226 (8%)
Query: 34 LKKCSSIK-ELEC--VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C IK E +C V+ ++++ + D + + C S + VF +M +
Sbjct: 112 LKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVK-CYSAMGLVCIARQVFDKMPARD 170
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ ++A S F L E L T + Q+ F ++ + ++
Sbjct: 171 LVAWNAMIS--------CFSQQGLHQEALQT--YNQMRSENVDVDGFTLVGLISSCAHLG 220
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
++ R + ++ N +ID YA+ L +F++M DI +W +MI
Sbjct: 221 ALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIV 280
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
Y + + EA+ F + ++ + VT +L C+H G + G
Sbjct: 281 GYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEG 326
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACA 243
A+LLF++M +W ++I ++Q+ +A+ +N+ S + D T + VL AC
Sbjct: 57 AQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACE 116
Query: 244 HLGALDLGRGIQ------------IYCRSLGR----------SLLVFFKLREKNLLCWNS 281
+ A + + I C +L + + VF K+ ++L+ WN+
Sbjct: 117 RIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNA 176
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + G EAL +++M ENV +G
Sbjct: 177 MISCFSQQGLHQEALQTYNQMRSENVDVDG 206
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 72/312 (23%)
Query: 60 FLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYL 111
+ Q + FC HF + Y I VF + EPN ++ HA SS P+ A+ Y+
Sbjct: 7 YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSS--DPVSALKLYV 64
Query: 112 YMLRAEVLLT---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
M+ +L +HG V K GF ++V T+++ Y+ +
Sbjct: 65 VMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNG 124
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMIT 205
+ ++++V FD R ++ +I YA A+ +F+++P D+ SW MI+
Sbjct: 125 RLEDAQKV----FDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMIS 180
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------- 257
Y++ +++AL+ F + K+ D+ TMATV+SACA G+++LGR + +
Sbjct: 181 GYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS 240
Query: 258 --------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGM 298
C + + + L K+++ WN++ I G+ H EAL +
Sbjct: 241 NLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTL-----IGGYTHMNLYKEALLL 295
Query: 299 FDRMTYENVRPN 310
F M PN
Sbjct: 296 FQEMLRSGETPN 307
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ E+ L + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------CRSLGRSLL-VFFKLRE--- 273
+ VTM ++L ACAHLGA+D+GR I +Y SL SL+ ++ K +
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDA 365
Query: 274 -----------KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++L WN++ A+HG A+ A +F RM + P+
Sbjct: 366 APQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD 413
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 176 TMIDAYARLAEL----------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
++ID YA+ ++ FN+ + +W MI ++ + + A D F++ +K
Sbjct: 352 SLIDMYAKCGDIDAAPQVSDSSAFNR----SLSTWNAMIFGFAMHGRANAAFDIFSRMRK 407
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEA 285
+G D +T +LSAC+H G LDLGR I RS+ + + KL + + +
Sbjct: 408 NGIEPDDITFVGLLSACSHSGMLDLGRNI---FRSMRQDYNITPKLEH-----YGCMIDL 459
Query: 286 LAIHGFAHEALGMFDRMTYENVRPNG 311
L G EA M + M E P+G
Sbjct: 460 LGHSGLFKEAEEMINTMPME---PDG 482
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 36/219 (16%)
Query: 122 TVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+H G + S V T+++D Y+ + + ++ +V FDEMPER A WN M+ A
Sbjct: 174 ALHASALATGLAQSSSHVMTSLLDMYATAGQLGDAGKV----FDEMPERTVAAWNCMLSA 229
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y R E+ F +MP D +WTT+I + + EA+D F + +K+ D VTM
Sbjct: 230 YVRCGEVDAALHFFGEMPGRDAVAWTTVIAGCANAGRAAEAVDLFWRMRKARVKDDAVTM 289
Query: 236 ATVLSACAHLGALDLGRGIQ-----------------------IYCRSLGRSLLVFFKLR 272
+L+ACA LG L LGR + + C ++ + +F ++
Sbjct: 290 VALLTACAELGDLQLGRWVHARVDQDGQDQRIVLLDNALIHMYVRCGAVEDAHCMFLRMP 349
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ + W ++ LAIHG A EAL +F RM RP+G
Sbjct: 350 RRSTVSWTTMISGLAIHGRAEEALELFRRM---EERPDG 385
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I Y R A +F +MP SWTTMI+ + + + EAL+ F + ++
Sbjct: 326 NALIHMYVRCGAVEDAHCMFLRMPRRSTVSWTTMISGLAIHGRAEEALELFRRMEER--- 382
Query: 230 SDQVTMATVLSACAHLGALD 249
D T+ VL AC+H G +D
Sbjct: 383 PDGATLLAVLWACSHSGKVD 402
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 55/279 (19%)
Query: 67 SFCTSRFHFIDYTILVFPQMQEPNVF--------VYHAFSSLRHPLQAIAFYLYMLRAEV 118
S+C +R + +L+F +M+ V V A +RH A + YML +++
Sbjct: 225 SYCQTRNY--KEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDM 282
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
++ + +A++ Y+ ++ +L++EMP + + M+
Sbjct: 283 IIGA--------------HISSALISLYASCANM----EMAEKLYNEMPRKDLVSSTAMV 324
Query: 179 DAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YAR +A +F+ MP D+ SW+ MI+ Y + Q EAL FN ++ G SD++
Sbjct: 325 SGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEI 384
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM +V+SACA+LG+LD + I + C + +L VF ++
Sbjct: 385 TMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEM 444
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KN++ W S+ A A+HG +L +F++M E PN
Sbjct: 445 PLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPN 483
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+F+ M D+ SW M+ SY Q + ++EAL F K K SG DQ+ +ATVL AC H+
Sbjct: 207 VFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRH 266
Query: 248 LDLGRGIQIY 257
L +G+ I Y
Sbjct: 267 LRIGKAIHSY 276
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ LA +FN+MP ++ +WT+MI++++ + + +L F + K G
Sbjct: 422 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAE 481
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
++VT ++L AC H G + GR
Sbjct: 482 PNEVTFLSLLYACCHAGLVHEGR 504
>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K GF VFV + +VD Y+ + +E+++V FDEMP+R NTMI
Sbjct: 163 IHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKV----FDEMPDRNVVMHNTMITGLL 218
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ + LF+ M D SWTTMIT QN EA+D F + + G G DQ T +
Sbjct: 219 KFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGS 278
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+AC L AL G+ + + C+ L + VF +++ KN
Sbjct: 279 VLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKN 338
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W +I +GF+ EA+ +F M + P+
Sbjct: 339 VVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIEPD 373
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD MP+R +WNT++ AY++ L +F+ MP D SW T+++ Y+
Sbjct: 62 ARHLFDGMPQRNSFSWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSV 121
Query: 214 REALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
+A+ A+N + G +++T +T+L + +DLGR I + G VF
Sbjct: 122 SDAVKAYNSMMRDGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVG-- 179
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ + + A G +EA +FD M NV
Sbjct: 180 -------SPLVDMYAKTGLVYEAKKVFDEMPDRNV 207
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y R AE +F +M ++ SWT ++ Y QN EA+ F +++G
Sbjct: 312 SALVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIE 371
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL----------------------- 266
D T+ +V+S+CA+L +L+ G Q +CR+L L+
Sbjct: 372 PDDFTLGSVISSCANLASLE--EGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSD 429
Query: 267 -VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F ++ ++ + W ++ A G A E + +F+RM ++P+
Sbjct: 430 RLFNEMNFRDEVSWTALISGYAQFGKARETIELFERMLAHGLKPD 474
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 20/226 (8%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVFVYHA 96
++++E + V+A I++++ + F+ + +C + + Y VF +M+ NV + A
Sbjct: 287 TALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKI--LRYAEAVFKRMKYKNVVSWTA 344
Query: 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESR 156
+ + E + V + +NG F +++ + + E
Sbjct: 345 I--------LVGYGQNGFSEEAV--KVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGA 394
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNK 211
+ R N ++ Y + + LFN+M D SWT +I+ Y+Q
Sbjct: 395 QFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGYAQFG 454
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
+ RE ++ F + G D VT VL AC+ G + RG Q +
Sbjct: 455 KARETIELFERMLAHGLKPDAVTFIGVLLACSRAGL--VARGQQFF 498
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 59/290 (20%)
Query: 76 IDYTILVFPQMQEPNVFV--------------YHAFS----SLRHPLQAIAFYLY-MLRA 116
+ +++ +F + PNVF+ +HA S L HP+Q AF L +L+A
Sbjct: 71 LHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKA 130
Query: 117 EVL--LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
L VH K G SS ++V T +VD Y+ +++ LFD MPER ++
Sbjct: 131 CTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQK----LFDAMPERSLVSY 186
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
M+ YA+ A +LF M D+ W MI Y+Q+ EAL F K G
Sbjct: 187 TAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGG 246
Query: 230 -------SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRS 260
+++T+ VLS+C +GAL+ G+ + Y C S
Sbjct: 247 NGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGS 306
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L + VF + K+++ WNS+ IHGF+ EAL +F M V+P+
Sbjct: 307 LEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPS 356
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V NG V V TA+VD Y ++R+V
Sbjct: 278 VHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKV------------------------ 313
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
F+ M D+ +W +MI Y + EAL F++ G +T VL+AC
Sbjct: 314 ------FDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTAC 367
Query: 243 AHLGALDLG 251
AH G + G
Sbjct: 368 AHAGLVSKG 376
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V G+ S VFV T+++ Y+ +R V FD MP+R +WN+M+ Y
Sbjct: 63 VHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHV----FDGMPQRSVVSWNSMLAGYV 118
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R A+ +F+ MP ++ SWTTM+ ++N + R+AL F + +++ DQV +
Sbjct: 119 RCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVA 178
Query: 238 VLSACAHLGALDLGRGIQIY---------------------------CRSLGRSLLVFFK 270
LSACA LG L LGR I Y C L + VF K
Sbjct: 179 ALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVK 238
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ K+ + W S+ A A G EAL +F M + V+ +G
Sbjct: 239 MPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDG 279
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-----NKTK 224
N +I YA L +F KMP SWT+MI ++++ +EALD F + K
Sbjct: 217 NALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVK 276
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGI 254
G D++T VL AC+H G +D G I
Sbjct: 277 VDGVRPDEITFIGVLCACSHAGFVDEGHQI 306
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K G S + +Q A++ YS V+R+LFDE +WN+MI Y
Sbjct: 263 IHSLSLKIGTESYINLQNALIYMYSKCGDIM----VARKLFDEAYLLDLISWNSMISGYL 318
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A+ +F+ MP D+ SW++MI+ Y+QN F E L F + + SG D+ T+ +
Sbjct: 319 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 378
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V+SACA L AL+ G+ + Y C + +L VF+ + EK
Sbjct: 379 VISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG 438
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ LA++G +L MF M +V PN
Sbjct: 439 ISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPN 473
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 132/330 (40%), Gaps = 80/330 (24%)
Query: 58 DCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLY 112
+ + A + I F T F IDYT +F ++ N F+++ A+ P A Y
Sbjct: 9 ETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKS 68
Query: 113 ML---------------------RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
ML R+E VH V K GF S V+V+ +++ +S +
Sbjct: 69 MLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 128
Query: 152 FFESRRV---------------------------SRRLFDEMPERKFATWNTMIDAYARL 184
++ RV ++ ++ +MPER N+MI +
Sbjct: 129 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 188
Query: 185 AEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+ LF++M D+ +W+ +I + QN+ + EA+ F K G D+V + L
Sbjct: 189 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248
Query: 240 SACAHLGALDLGRGIQ------------------IYCRSLGRSLLVFFKLREK----NLL 277
SACA+L +++G+ I IY S ++V KL ++ +L+
Sbjct: 249 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 308
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENV 307
WNS+ A +FD M ++V
Sbjct: 309 SWNSMISGYLKCNLVDNAKAIFDSMPEKDV 338
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+ID Y + + +F M I +W +I + N +LD F+ KK
Sbjct: 413 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 472
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+++T VL AC H+G +D G+
Sbjct: 473 NEITFMGVLGACRHMGLVDEGQ 494
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 55/328 (16%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVF 92
L++C ++ +++ +++ ++ + + LD F A + IS F S I + +F + F
Sbjct: 17 LEQCRTMSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTF 76
Query: 93 VYHA----FSSLRHPLQAIAFYLYMLRAEVLLT-------------------TVHGQVWK 129
+++ F A++ Y ML+ L H QV K
Sbjct: 77 IWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIK 136
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----L 184
G+ S FV ++ + Y+N + S +R+LFD R TW +I+ Y +
Sbjct: 137 LGWESYDFVLNGLI--HLYAN--WSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEF 192
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF++MP + SW+ MIT Y FREAL+ FN + +G + + L+AC++
Sbjct: 193 ARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSY 252
Query: 245 LGALDLGRGIQIYC--------RSLGRSLL--------------VFFKLREKNLLCWNSI 282
LG+LD GR I Y R LG +L+ VF K+ +K+ + S+
Sbjct: 253 LGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSL 312
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
LA HG + +A+ +F RM E V PN
Sbjct: 313 ISGLANHGQSADAIQLFGRMQSEKVIPN 340
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ +A +F KMP D ++T++I+ + + Q +A+ F + +
Sbjct: 280 ALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIP 339
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY-CRSL 261
++VT VLSAC+ +G +D G++I+ C S+
Sbjct: 340 NEVTFICVLSACSRMGLVD--EGLRIFNCMSV 369
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 149/361 (41%), Gaps = 92/361 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF- 92
LK C K++ C I+K N + FL +S ++F I Y VF QM + N++
Sbjct: 22 LKHCRDTKKIHC---HIIKAFRNPEIFLLNNLVS-AYAKFDRITYARRVFDQMPQRNLYS 77
Query: 93 -------------------VYHA---------------FSSLRHPLQAIAFYLYMLRA-- 116
V+HA ++ LQ++ Y ML
Sbjct: 78 WNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGP 137
Query: 117 ----EVLLTT----------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESR 156
+ L+T VHG V K GF S VFV + +VD YS + F
Sbjct: 138 FNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF--- 194
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNK 211
+R+ FDEMPE+ +NT+I R + + LF M D SWT MI ++QN
Sbjct: 195 -CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNG 253
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
REA+D F + + DQ T +VL+AC + AL G+ + Y
Sbjct: 254 LDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGS 313
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C+S+ + VF K+ KN++ W ++ +G++ EA+ +F M + P
Sbjct: 314 ALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEP 373
Query: 310 N 310
+
Sbjct: 374 D 374
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y + AE +F KM ++ SWT M+ Y QN EA+ F + +G
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--------------- 274
D T+ +V+S+CA+L +L+ G Q +CR+L L+ F +
Sbjct: 373 PDDFTLGSVISSCANLASLE--EGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430
Query: 275 ---------NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + W ++ A G A+E L +F+ M +P+
Sbjct: 431 RLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPD 475
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT +++ Y+Q + E L F G
Sbjct: 414 NALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFK 473
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D+VT VLSAC+ G + G I
Sbjct: 474 PDKVTFIGVLSACSRAGLVQKGNQI 498
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 57/278 (20%)
Query: 76 IDYTILVFPQMQEPNVFVYHA------FSSLRHPLQAIAFYLYMLRAEV---------LL 120
I +++ +F Q +P++F++ A + L+ QA Y+ +L +++ +L
Sbjct: 78 IRHSLALFHQTIDPDLFLFTAAINTASINGLKD--QAFLLYVQLLSSQINPNEFTFSSIL 135
Query: 121 TT--------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
+ +H V K G +V T +VD Y+ +++V FD MPER
Sbjct: 136 KSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKV----FDRMPERSLV 191
Query: 173 TWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+ MI YA+ A LF++M DI SW MI YSQ+ +AL F K G
Sbjct: 192 SSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADG 251
Query: 228 -TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
D++T+ LSAC+ +GAL+ GR I ++ C SL +
Sbjct: 252 KPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEA 311
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+LVF K+++ WN++ A+HG++ +AL +FD M
Sbjct: 312 VLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEM 349
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGS 230
+ID Y++ A L+FN P DI +W MIT Y+ + ++AL F++ + +G
Sbjct: 298 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQP 357
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGR 263
+T L ACAH G ++ GIQI+ S+G+
Sbjct: 358 TDITFIGTLQACAHAGLVN--EGIQIF-ESMGQ 387
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 58/326 (17%)
Query: 39 SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVFVYH-- 95
++KEL+ ++ +V + L QF++ R + Y+ + Q +P +F +
Sbjct: 21 TLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSM 80
Query: 96 --AFSSLRHPLQAIAFYLYMLRAEVLLT----------------------TVHGQVWKNG 131
A+S P ++ FY +L++ +++ VHG + K+G
Sbjct: 81 IRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACEAGPAVHGALIKHG 140
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
F V++ ++ Y+ + RV F+ + + TM+ A A+ ++
Sbjct: 141 FEYDPHVESGLIFMYAEMSCLSSCHRV----FESVQKPDLVCQTTMVSACAKCGDIGFAR 196
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LF+ MP D SW MI Y+Q Q REAL+ F + G ++V+M +V++AC HLG
Sbjct: 197 NLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLG 256
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
ALD G+ Y C ++ R+L VF+++ EKN+ W++
Sbjct: 257 ALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIG 316
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
LA++G+ + L +F M +E + PN
Sbjct: 317 GLAMNGYGQKCLELFSFMKHEGIAPN 342
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 49/273 (17%)
Query: 71 SRFHFIDYTILVFPQMQ----EPNVFVYHAF--SSLRHPLQAIAFYLYMLRAEVLLTTVH 124
S+ F D IL+F +M E +VF + +S +H + + VH
Sbjct: 214 SKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRF------------VH 261
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
+ G V A++D Y+ + ++ +FD+M ++ +W +M++AYA
Sbjct: 262 LYIVITGVEIDSIVTNALIDMYAKCGHL----QFAKHVFDQMLDKDVVSWTSMVNAYANQ 317
Query: 185 -----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
A +FN MP ++ SW ++I Q Q+ EA++ F++ SG D T+ ++L
Sbjct: 318 GLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSIL 377
Query: 240 SACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL 277
S C++ G L LG+ Y C +L ++ +FF + EKN++
Sbjct: 378 SCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVV 437
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN I ALA+HGF EA+ MF M + P+
Sbjct: 438 SWNVIIGALALHGFGEEAIEMFKSMQASGLYPD 470
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 78/321 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L +CSS+K L+ V+A I+ + +S C + Y L+F Q+ +PN F+
Sbjct: 46 LDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGD-LRYAHLLFDQIPQPNKFM 104
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVL---------------------LTTVHGQVW 128
Y+ +S+ P++++ + M+ A + VH Q
Sbjct: 105 YNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAI 164
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL 188
K G VQ A++ Y +R+V FD++ +R +WN+
Sbjct: 165 KLGMGPHACVQNAILTAYVACRLILSARQV----FDDISDRTIVSWNS------------ 208
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
MI YS+ EA+ F + + G +D T+ ++LSA + L
Sbjct: 209 --------------MIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNL 254
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
DLGR + +Y C L + VF ++ +K+++ W S+ A
Sbjct: 255 DLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAY 314
Query: 287 AIHGFAHEALGMFDRMTYENV 307
A G A+ +F+ M +NV
Sbjct: 315 ANQGLVENAVQIFNHMPVKNV 335
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID YA+ L +F MP ++ SW +I + + + EA++ F + SG
Sbjct: 409 NSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLY 468
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D++T +LSAC+H G +D+GR
Sbjct: 469 PDEITFTGLLSACSHSGLVDMGR 491
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 123/269 (45%), Gaps = 37/269 (13%)
Query: 69 CTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128
C + + +++F +M + V + L A + L ++ ++ VHG V
Sbjct: 263 CYEQNEMYEEALILFKEMNANGIMVDEVV--VLSVLSACSRLLVVITGKL----VHGLVV 316
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K G + V +Q A++ YS E +++LF E +WN+MI Y + E+
Sbjct: 317 KVGIETYVNLQNALIHMYSSC----EEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIE 372
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF+ MP D SW+ MI+ Y+Q +F E L F + + GT D+ + +V+SAC
Sbjct: 373 KARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACT 432
Query: 244 HLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNS 281
HL ALD G+ I Y R LG +L+ VF L EK + WN+
Sbjct: 433 HLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNA 492
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA++G ++L F M V PN
Sbjct: 493 LILGLAMNGLVDKSLKTFSEMKEHGVTPN 521
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 147/355 (41%), Gaps = 82/355 (23%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQ 87
I+ L+KC +IK+ + + ++ + D F A + + F T F I+ + +F ++
Sbjct: 28 ILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIE 87
Query: 88 EPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT--------------------- 122
PN F+ + + P +AI Y +ML + V
Sbjct: 88 NPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKC 147
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------ 158
+ V K GF S V++Q +++ Y+ ++R+V
Sbjct: 148 IQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGN 207
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQN 210
++ ++D MPER N+MI + + + LFN+M D+ SW+ +I+ Y QN
Sbjct: 208 VEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQN 267
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQIYCRSL 261
+ + EAL F + +G D+V + +VLSAC+ L + G+ GI+ Y +L
Sbjct: 268 EMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYV-NL 326
Query: 262 GRSLLVFFKLREK--------------NLLCWNSITEALAIHGFAHEALGMFDRM 302
+L+ + E+ + + WNS+ G +A +FD M
Sbjct: 327 QNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSM 381
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+I+ Y +L + +F + + +W +I + N ++L F++ K+ G
Sbjct: 461 TLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTP 520
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+++T VL AC H+G +D G
Sbjct: 521 NEITFVAVLGACRHMGLVDEGH 542
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 149/347 (42%), Gaps = 67/347 (19%)
Query: 28 HIIANQLKKCSSIKELECVYAT------IVKTNANLDCFLAKQFISFCT-----SRFHFI 76
H I +++C +I +L V+A + T + L K + T S F +
Sbjct: 28 HSIYTLIRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSSFSLL 87
Query: 77 DYTILVFPQMQEPNVFVYHAFSSLR----HPLQAIAFYLYM------------------- 113
Y + F +Q P+ F Y+ L L A+ F+L M
Sbjct: 88 HYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKAC 147
Query: 114 --LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
LR L +H QV+K GF S ++V +++ YS F+ + ++FDE +R
Sbjct: 148 AHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYS----LFDCLNYACQVFDESSDRDV 203
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
++N ++D + + E +F+ MP D SW ++I Y+Q EA+ F+
Sbjct: 204 VSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGL 263
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLLVF---------- 268
D + + + LSACA LG L+ G+ I Y + L L+ F
Sbjct: 264 KLEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTA 323
Query: 269 ---FKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F+L +K+L+ WN++ +A+HG +H L F RM ++P+G
Sbjct: 324 IKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDG 370
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 107/199 (53%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
AM+D + + ++R++FDEMPER ++ MID YA+ ++ LF + P
Sbjct: 113 NAMIDGWVKAGDLL----LARKVFDEMPERNVVSFTVMIDGYAKAGDMTTARDLFERAPK 168
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ +W+ +I+ Y+QN Q EA+ F + + D+ M +++SAC+ LG+LDL R
Sbjct: 169 RDVIAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSACSQLGSLDLARWA 228
Query: 255 QIY-----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
Y C ++ R+ +F ++ +++L+ + S+ + L+IHG
Sbjct: 229 DCYLSKSSIDIGQTHVIAALIDMNAKCGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGC 288
Query: 292 AHEALGMFDRMTYENVRPN 310
A +A+G+F+RM E++ P+
Sbjct: 289 AEQAVGLFNRMLNESLIPD 307
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A+ LF +MP D+ ++ +MI S + +A+ FN+ D+ VL+AC+
Sbjct: 261 AKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPDEAAFTVVLTACSR 320
Query: 245 LGALDLGR 252
G +D GR
Sbjct: 321 GGLVDEGR 328
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 27/182 (14%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNK 211
++ +L++ + E++ TM+ YA+ +A +FN MPA D+ SW+ MI Y+++
Sbjct: 62 EMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESS 121
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
+ EAL+ F+ ++SG D++TM +V+SACA++GAL+ R I +
Sbjct: 122 KPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGN 181
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C SL +L VF + +KN++ W SI A A+HG AL +F+ M E ++P
Sbjct: 182 ALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQP 241
Query: 310 NG 311
NG
Sbjct: 242 NG 243
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +++ L +FN MP ++ +WT++IT+ + + R AL F K G
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 240
Query: 230 SDQVTMATVLSACAHLGALDLGR-----GIQIY----------CRS--LGRS-------- 264
+ VT +L AC H G ++ GR +Q Y C LGR+
Sbjct: 241 PNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAAD 300
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ LR N++ W S+ A +HG LG F + PN
Sbjct: 301 LIQSMHLR-PNVVIWGSLLAACRMHGDLE--LGTFAAKKILELDPN 343
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K G S + +Q A++ YS V+R+LFDE +WN+MI Y
Sbjct: 398 IHSLSLKIGTESYINLQNALIYMYSKCGDIM----VARKLFDEAYLLDLISWNSMISGYL 453
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A+ +F+ MP D+ SW++MI+ Y+QN F E L F + + SG D+ T+ +
Sbjct: 454 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 513
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V+SACA L AL+ G+ + Y C + +L VF+ + EK
Sbjct: 514 VISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG 573
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ LA++G +L MF M +V PN
Sbjct: 574 ISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPN 608
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 54/247 (21%)
Query: 115 RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------- 158
R+E VH V K GF S V+V+ +++ +S + ++ RV
Sbjct: 227 RSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSIL 286
Query: 159 -----------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
++ ++ +MPER N+MI + + LF++M D+ +W+
Sbjct: 287 AGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSA 346
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------- 255
+I + QN+ + EA+ F K G D+V + LSACA+L +++G+ I
Sbjct: 347 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 406
Query: 256 -----------IYCRSLGRSLLVFFKLREK----NLLCWNSITEALAIHGFAHEALGMFD 300
IY S ++V KL ++ +L+ WNS+ A +FD
Sbjct: 407 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 466
Query: 301 RMTYENV 307
M ++V
Sbjct: 467 SMPEKDV 473
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+ID Y + A +F M I +W +I + N +LD F+ KK
Sbjct: 548 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 607
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+++T VL AC H+G +D G+
Sbjct: 608 NEITFMGVLGACRHMGLVDEGQ 629
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS +F R +R +FD M E+ TW
Sbjct: 31 SEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRF----RKARLVFDYMEEKNSVTW 86
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ LF++MP D+ SWT MI + + EAL F + + SG
Sbjct: 87 NTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVK 146
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLV 267
D V + L+AC +LGAL G I +YCR + + V
Sbjct: 147 PDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 206
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F K+ ++ ++ WNS+ A +G AHE+L F +M E +PN
Sbjct: 207 FDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPN 249
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 188 NSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFK 247
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT L+AC H+G ++ G
Sbjct: 248 PNAVTFTGALAACNHVGLVEEG 269
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 32/219 (14%)
Query: 121 TTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
T +H V K G + V V TA++D Y+ + ES R++ FD+M R +WNTMID
Sbjct: 114 TAIHAHVRKLGLDINDVMVGTALIDMYAKCGRV-ESARLA---FDQMGVRNLVSWNTMID 169
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y R + +F+ +P + SWT +I + + EAL+ F + + SG D VT
Sbjct: 170 GYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVT 229
Query: 235 MATVLSACAHLGALDLG--------------------RGIQIY--CRSLGRSLLVFFKLR 272
+ V++ACA+LG L LG I +Y C + + VF ++
Sbjct: 230 VIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMP 289
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ L+ WNSI A++G A EAL F+ M E +P+G
Sbjct: 290 QRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDG 328
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y+R LA +F++MP + SW ++I ++ N EAL FN ++ G
Sbjct: 266 NSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFK 325
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
D V+ L AC+H G +G G++I+
Sbjct: 326 PDGVSYTGALMACSHAGL--IGEGLRIF 351
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL---GALDLGRG 253
I SWTT I Y ++ +A F + +++ + +T T+LSACAH ++ G
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 254 IQIYCRSLGRSL-----------------------LVFFKLREKNLLCWNSITEALAIHG 290
I + R LG + L F ++ +NL+ WN++ + +G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 291 FAHEALGMFDRMTYEN 306
+AL +FD + +N
Sbjct: 176 KFEDALQVFDGLPVKN 191
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 65/340 (19%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
I ++ + +K+L+ T+ + + F A + I FC+ + Y +F + P
Sbjct: 12 ILTKINHLNQLKQLQSHLTTLGHSQTH---FYAFKLIRFCSLNLSNLHYAHQIFNHIHSP 68
Query: 90 NVFVYHAFSSLRHPLQAIAFYLY--MLRAEV------------------LLTTVHGQVWK 129
N++++ A + Q F L+ ML + + L+ VH Q+ K
Sbjct: 69 NIYLFTAIITAFSSQQHTTFKLFKTMLNSNIRPNNFIYPHVLKSVKERFLVDLVHAQIVK 128
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE--- 186
GF + V+T++VD+YS K R + ++FDEM ER + ++ Y R+ +
Sbjct: 129 CGFLNYPVVETSLVDSYS---KVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEK 185
Query: 187 --LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK---TKKSGTGS-------DQVT 234
++F++M D+ +W +I+ +QN F E + F + G G +QVT
Sbjct: 186 GLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVT 245
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
+ VLSAC H G L LG+ I Y C SL + VF +
Sbjct: 246 VVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQ 305
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTY--ENVRPN 310
K L WNS+ A+HG +A+ F++M VRP+
Sbjct: 306 RKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPD 345
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 32/133 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V+++GF FV A+VD Y S ++R++F EM +RK T
Sbjct: 265 IHGYVYRHGFVVDSFVSNALVDMYGKCG----SLELARKVF-EMDQRKGLT--------- 310
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATVLS 240
SW +MI Y+ + + +A+ F K + G G D+VT +L+
Sbjct: 311 ----------------SWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLN 354
Query: 241 ACAHLGALDLGRG 253
AC H G ++ G G
Sbjct: 355 ACTHGGLVEQGCG 367
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 46/309 (14%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVF 92
+K+C+ + +L+ + A +V+ N D FL + I S + + Y +F PN+F
Sbjct: 14 IKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLF 73
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
+++ +S P+ AIA Y ++ L + + GF +
Sbjct: 74 MWNTIIRGYSISDSPITAIALY-----RDMFLCGISPNSYTFGFVLKACCKLL------- 121
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTM 203
+ E + + ++ + + N +I YA A ++F++MP D SW+TM
Sbjct: 122 --RLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTM 179
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------ 257
++ Y+QN Q EAL F + + SD T+A+V+ C LGALDLG+ + Y
Sbjct: 180 VSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV 239
Query: 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
C SL +L VF + E+++ W+++ AIHG +AL +FD
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA 299
Query: 302 MTYENVRPN 310
M PN
Sbjct: 300 MKRSKTIPN 308
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 114/294 (38%), Gaps = 51/294 (17%)
Query: 34 LKKCSSIKEL---ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C + L + +++ IVK + + L I + +DY ++F +M EP+
Sbjct: 114 LKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKL-YAACGCMDYACVMFDEMPEPD 172
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
+ ++ ++A+ + M V SS F ++V
Sbjct: 173 SASWSTMVSGYAQNGQAVEALKLFREMQAENV--------------SSDAFTLASVVGVC 218
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
+ V + E + ++ Y++ L +F M D+ +W+
Sbjct: 219 GDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWS 278
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI------- 254
TMI Y+ + +AL F+ K+S T + VT +VLSAC+H G ++ G I
Sbjct: 279 TMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTE 338
Query: 255 --------------QIYCRS--LGRSLLVFFKLR-EKNLLCWNSITEALAIHGF 291
++CR+ +G + + E N++ W ++ A HG+
Sbjct: 339 YKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGY 392
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 151/339 (44%), Gaps = 58/339 (17%)
Query: 7 RAIITSFKK----NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLA 62
R +I F+K + P SF I+ K ++ KE E ++ ++K+ + F+
Sbjct: 146 REVIVLFRKMISMDILPNCFSF---PIVIKSSVKINAFKEGEELHCFVIKSGCRANPFVG 202
Query: 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT 122
I +S I VF +M E NV + + M++ +L
Sbjct: 203 TMLIDLYSSG-RMIVSAYRVFGEMIERNVVAWTS----------------MIKGFILCND 245
Query: 123 VHG--QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+ ++++ V + M+ Y ++ LF +MP + +WNT+++
Sbjct: 246 IETARRLFELAPQRDVVLWNIMISGYIDIGDLVRAQE----LFHKMPNKDVMSWNTLLNG 301
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVT 234
YA ++ LF +MP ++ SW +I Y+ + F E L +F + G + T
Sbjct: 302 YANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDAT 361
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLR 272
+ TVLSACA LGALDLG+ + +Y +S G +++VF L
Sbjct: 362 LVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLD 421
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+K+L+ WN++ LA+HG A +AL +F RM +P+G
Sbjct: 422 KKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDG 460
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ A ++F + D+ SW T+I + + + +AL F++ K +G
Sbjct: 398 NALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEK 457
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D +T VL AC H+G +D G
Sbjct: 458 PDGITFLGVLCACTHMGLVDDG 479
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 34/194 (17%)
Query: 105 QAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
+ I LY + L + + +G ++ ++ +++ F+ R + +LFD
Sbjct: 67 EKIISLLYSCKTLNHLHQIQSHIINHGLQFNDYITPKIITSFA----LFKRMRHAHKLFD 122
Query: 165 EMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIR----SWTTMITSYSQNKQFRE 215
++PE + WN M+ Y+ R +LF KM + DI S+ +I S + F+E
Sbjct: 123 QIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKE 182
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL----VFFKL 271
+ KSG ++ + T+L I +Y S GR ++ VF ++
Sbjct: 183 GEELHCFVIKSGCRANPF-VGTML--------------IDLY--SSGRMIVSAYRVFGEM 225
Query: 272 REKNLLCWNSITEA 285
E+N++ W S+ +
Sbjct: 226 IERNVVAWTSMIKG 239
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 26/178 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LF++MPE+ +W +MI AYA +L F MP ++ SW +MI+SY+++ +F
Sbjct: 181 ARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKF 240
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI------------------- 254
E+L+ F + + G D T +VLSAC++LG L+ G+ I
Sbjct: 241 VESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALT 300
Query: 255 QIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++Y C + ++ VF K+ ++++ CWN I +ALA+HG + EA+ +F M ++PN
Sbjct: 301 EMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPN 358
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS-------RRLFDEMPERKFATWN 175
VH ++ K+GF S V ++ + Y F+ S R++FD+M R WN
Sbjct: 76 VHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWN 135
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
MI Y + ++ LF+ MP DI SW +MI Y++ + A F K +
Sbjct: 136 QMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNV-- 193
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
++ +++ A A L+ R F + ++N++ WNS+ + A HG
Sbjct: 194 --ISWTSMIGAYADTDDLETARSF-------------FETMPQRNVVSWNSMISSYAKHG 238
Query: 291 FAHEALGMFDRMTYENVRPNG 311
E+L +F +M E V P+G
Sbjct: 239 KFVESLNLFVQMQSEGVTPDG 259
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 69/331 (20%)
Query: 30 IANQLKKCSSIKELECVYATIVKTN-------ANLDCFLAKQFISFCTSRFHFIDYTILV 82
+A + K S+ E+ ++A I++ N L+ L + + S R +++ +
Sbjct: 32 LAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIR-----HSLAL 86
Query: 83 FPQMQEPNVFVYHA------FSSLRHPLQAIAFYLYMLRAEV---------LLTT----- 122
F Q +P++F++ A + L+ QA Y+ +L +E+ LL +
Sbjct: 87 FHQTIDPDLFLFTAAINTASINGLKD--QAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS 144
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H V K G +V T +VD Y+ +++V FD MPER + MI
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKV----FDRMPERSLVSSTAMIT 200
Query: 180 AYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQV 233
YA+ A LF+ M DI SW MI Y+Q+ +AL F K G D++
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ LSAC+ +GAL+ GR I ++ C SL ++LVF
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRM 302
K+++ WN++ A+HG++ +AL +F+ M
Sbjct: 321 PRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGS 230
+ID Y++ A L+FN P DI +W MI Y+ + ++AL FN+ + +G
Sbjct: 300 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQP 359
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGR 263
+T L ACAH G ++ GI+I+ S+G+
Sbjct: 360 TDITFIGTLQACAHAGLVN--EGIRIF-ESMGQ 389
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 146/346 (42%), Gaps = 72/346 (20%)
Query: 34 LKKCSSIKELECVYATIVKTNA-----NLDCFLAKQFISFC----------TSRFHFIDY 78
+++C S+K+L V+A + T + L +F T+ Y
Sbjct: 22 IRQCKSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAALTGY 81
Query: 79 TILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV---------------- 118
+ VF ++ P+ F Y+ A + L PL A+ ++ M R V
Sbjct: 82 ALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSL 141
Query: 119 -----LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L T+H Q +K GF + +FV ++ YS + + +V F+E + +
Sbjct: 142 LPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQV----FNETSLKDVVS 197
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF-REALDAFNKTKKSG 227
+N +I + ++ + LF+KMP D SW T++ Y+Q+ +A+ FN+ S
Sbjct: 198 YNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLIST 257
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265
D + + + LSACA LG L+ G+ I +Y C + +
Sbjct: 258 VRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAR 317
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+F +KNL WN++ L +HG H +L F RM ++P+G
Sbjct: 318 EIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDG 363
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G + + A++D Y+ ++ R+F +MP + +W +MI AYA
Sbjct: 211 VHLYIQITGMKIDLVARNALIDMYAKCGALV----LAERVFQQMPNKNVVSWTSMITAYA 266
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A F++MP ++ SW +MI+SY Q Q REALD F++ ++ T+ +
Sbjct: 267 KQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLS 326
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VLSAC +G L +G+ I Y C +L ++ VF ++ KN
Sbjct: 327 VLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKN 386
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ WN I ALA+HG+ EA+ +F +M V P+
Sbjct: 387 LVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPD 421
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 128/316 (40%), Gaps = 78/316 (24%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVFVYH--- 95
+K+ + ++A I+ N + +SFC S +DY LVF Q+ PN F+Y+
Sbjct: 1 MKQSKQIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLI 60
Query: 96 -AFSSLRHPLQAIAFYLYML---------------------RAEVLLTTVHGQVWKNGFS 133
+ + P++++ Y ++ A + VHG K GF+
Sbjct: 61 RGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFA 120
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP 193
S + VQ +++ Y + F R +R++FD+M ER
Sbjct: 121 SLICVQNGLINAY-IACGFI---RYARKMFDDMSERSLV--------------------- 155
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
SW +MI YS+ +E F + ++ GT +D T+ +L C+ ++LGR
Sbjct: 156 -----SWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRF 210
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C +L + VF ++ KN++ W S+ A A G
Sbjct: 211 VHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYAKQGL 270
Query: 292 AHEALGMFDRMTYENV 307
A FD+M +NV
Sbjct: 271 VEYARKSFDQMPEKNV 286
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID YA+ L +FN+MP ++ SW +I + + + EA++ F K + +G
Sbjct: 360 NSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVW 419
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D++T +LSAC+H G +D G
Sbjct: 420 PDEITFMGLLSACSHSGLVDSG 441
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 166/394 (42%), Gaps = 119/394 (30%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L KC+++ +++ ++A I++ N + D +A + IS S + + VF Q+QEPNV
Sbjct: 25 DLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLIS-ALSLCRQTNLALRVFNQVQEPNVH 83
Query: 93 V------YHAFSSLRHPLQAIAF---------------YLYMLRAEVLLT------TVHG 125
+ HA +S P QA Y ++L+A L+ +H
Sbjct: 84 LCNSLIRAHALNS--QPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHN 141
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSN--------KFFESR--------------------- 156
+ K G SS ++V A++D YS K FE
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYAR--------------------------------- 183
R +R+LFDEMP+R +WNTM+D YAR
Sbjct: 202 RDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAG 261
Query: 184 ---LAELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+A ++F+KMP A ++ +WT +I Y++ +EA ++ SG D ++
Sbjct: 262 DMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISI 321
Query: 239 LSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNL 276
L+ACA G L LG + +Y C SL ++ VF + +K+L
Sbjct: 322 LAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDL 381
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ L +HG EA+ +F RM E + P+
Sbjct: 382 VSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPD 415
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ L +FN MP D+ SW TM+ + +EA++ F++ +K G
Sbjct: 354 NALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIW 413
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT VL +C H G +D G
Sbjct: 414 PDKVTFIAVLCSCNHAGLIDEG 435
>gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 404
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 87/375 (23%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYT 79
+S + I HII + + +L ++ I+ N + + Q IS + R I Y+
Sbjct: 29 SSQNQIETHIIP-LIHSSKTALQLHQIHTQILLHNLSSSSHITAQLISSSSLR-KSIAYS 86
Query: 80 ILVFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYMLRAEV---------------- 118
+ +F N+++++A + R+ L +I ++ +LR+++
Sbjct: 87 LSIFNSYHPKNLYLFNALIRGLTDNYRY-LDSIDHFILLLRSDIKPDHLTFSFVLKSIAS 145
Query: 119 -----LLTTVHGQVWKNGFSSPVFVQTAMVDNY--------------SYSNKFFESR--- 156
L +HG + + G FV+ +MVD Y +F E
Sbjct: 146 LSLKGLARALHGMILRCGLEFDSFVRISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLL 205
Query: 157 --------------RVSRRLFDEMPERKFATWNTMIDAYARLAELL-----FNKMPAWDI 197
R + LF++MP R A+WN++I+ + ++ +L F++MP D+
Sbjct: 206 WNVLINGCCKVGDMRKALELFEDMPLRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDV 265
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
SWTTM+ +SQN +AL F++ + T+ + LSACA +GAL+ G I Y
Sbjct: 266 VSWTTMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAKIGALEAGLRIHKY 325
Query: 258 C--------RSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEA 295
R++G +L+ VF + +EK+++ W+ + AIHG EA
Sbjct: 326 LKDNGFRLNRAVGNALVDMHAKCGNINSASQVFKEAKEKDIITWSVMIWGWAIHGHFEEA 385
Query: 296 LGMFDRMTYENVRPN 310
+ F +M Y ++P+
Sbjct: 386 IQCFKQMMYAGIQPD 400
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 161/383 (42%), Gaps = 95/383 (24%)
Query: 19 PTSVSFIRIHI--IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFI 76
P+ + H+ + L + + ++EL +A ++K +L+ A + +S + +
Sbjct: 345 PSQRRLVEQHLASLPRGLPRAAHVREL---HAQVLKQGLHLNPRAAARLVS-AYALLRLL 400
Query: 77 DYTILVFPQMQEPNVFVYHAFSSLRH------PLQAIAFYLYMLRAE------------- 117
+ VF +++P+ + A + LR P A+A + M R +
Sbjct: 401 PSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSFTYSFLIKALSA 460
Query: 118 ---VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------- 158
+ VH V K G FV A++D YS + F ++R+V
Sbjct: 461 AGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAM 520
Query: 159 -----------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
+R+LFDEMPE+ +WNT++D Y + E+ LF +MP ++ SW+T
Sbjct: 521 AAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWST 580
Query: 203 MITSYSQNKQFREALDAFNK------------TKKSGTGSDQVTMATVLSACAHLGALDL 250
M++ Y + A F+K K++ D + ++L+ACA G+L L
Sbjct: 581 MVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSL 640
Query: 251 GRGIQIYC--RSLGRSLLVFFKL---------------------REKNLLCWNSITEALA 287
G+ I Y R+LGRS V L +K+ + WNSI A
Sbjct: 641 GKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFA 700
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+HG +AL +F +M + P+
Sbjct: 701 MHGHGDKALELFAQMKQQGFNPD 723
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D SW ++I ++ + +AL+ F + K+ G D VTM VLSAC H+G +D GR
Sbjct: 688 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR--- 744
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
Y ++ R + ++ + + + L G EA+ + M +E PN
Sbjct: 745 RYFSNMERDYGIMPQIEH-----YGCMIDLLGRGGLIKEAVDLIKSMPWE---PN 791
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 117/215 (54%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K G S+ VFV ++++D Y K R ++ +FD +PE+ WN++ Y+
Sbjct: 403 IHARSLKMGSSTNVFVSSSLIDMYCKCKKC----RDAQTIFDTLPEKNIVCWNSLASGYS 458
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ LF KMPA ++ SW T+I+ Y+QN+QF +AL +FN SG ++T ++
Sbjct: 459 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 518
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA+L +L G+ G++ +Y +S L S +F+++ E+N
Sbjct: 519 VLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 578
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +GFA E++ + + M + PN
Sbjct: 579 DVTWTAMIQGLAENGFAEESILLLEDMMATGMTPN 613
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
++ V + N F S + VQ +++ Y +R+V FDEM + +W ++D
Sbjct: 268 MSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKV----FDEMDVKDVVSWTALLD 323
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y+ +L + + MP + SW T+I + Q EA+ +++ G +
Sbjct: 324 VYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISC 383
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSL--GRSLLVFFK---------------------- 270
++VLSACA L DL G +I+ RSL G S VF
Sbjct: 384 FSSVLSACATLE--DLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDT 441
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L EKN++CWNS+ + +G EA+ +F +M N+
Sbjct: 442 LPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNL 478
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY---ARLAEL--LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD MPER ++ TM+DA R+AE L+ + P+ + +T I+ + +N+
Sbjct: 170 ARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELH 229
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
AL F K G + +T ++ AC +GA + G + I ++ + FF E
Sbjct: 230 HNALGVFRKMVSCGVRPNGITFVCMIKAC--VGAGEFGLAMSIVGSAIKSN---FF---E 281
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++ NS+ G A A +FD M ++V
Sbjct: 282 SSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDV 315
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V + G + V + A+VD + R +R +FD M + +W +M++AYA
Sbjct: 267 LHKYVTEGGVARSVNLDNALVDMFGKCGCV----RYAREVFDGMEVKDVYSWTSMVNAYA 322
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ AE LF MP ++ SW+ MI +YSQ Q EA+ F + +G T+ +
Sbjct: 323 KCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVS 382
Query: 238 VLSACAHLGALDLGR------------GIQI-----------YCRSLGRSLLVFFKLREK 274
VLSACA LG LDLGR G+ + C +G + +F ++ E+
Sbjct: 383 VLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAER 442
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ WN++ A A+HG + EA+ +F+++ EN+ P+
Sbjct: 443 NVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPD 478
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ LF++M ++ SW TMI +++ + Q EA+ F + K
Sbjct: 417 NALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV 476
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
DQ+T +L++C+H G + GR
Sbjct: 477 PDQITFLGLLASCSHSGLVSEGR 499
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 68/352 (19%), Positives = 115/352 (32%), Gaps = 87/352 (24%)
Query: 13 FKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR 72
+ ++ T+ + + H + + L+ C+S + L ++A + T F A + ++FC
Sbjct: 21 LPRPAWNTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALS 80
Query: 73 FHFIDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT---- 122
P Y F R P +A+ + ++R +
Sbjct: 81 TPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFV 140
Query: 123 -----------------------VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRV 158
+H K GF V V A+V Y+ ++ +V
Sbjct: 141 FAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKV 200
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
FDEMPER D+ SWTT++ Y++ EA
Sbjct: 201 ----FDEMPER--------------------------DVVSWTTLVDGYARAGLADEAWR 230
Query: 219 AFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------------- 257
F + G + VT+ +SA +G L G + Y
Sbjct: 231 LFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMF 290
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C + + VF + K++ W S+ A A G A +F M NV
Sbjct: 291 GKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 117/215 (54%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K G S+ VFV ++++D Y K R ++ +FD +PE+ WN++ Y+
Sbjct: 404 IHARSLKMGSSTNVFVSSSLIDMYCKCKKC----RDAQTIFDTLPEKNIVCWNSLASGYS 459
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ LF KMPA ++ SW T+I+ Y+QN+QF +AL +FN SG ++T ++
Sbjct: 460 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 519
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
VL ACA+L +L G+ G++ +Y +S L S +F+++ E+N
Sbjct: 520 VLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 579
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ + LA +G A E++ +F+ M + PN
Sbjct: 580 DVTWTAMIQGLAENGLAEESILLFEDMMATGMTPN 614
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
++ V + N F S + VQ +++ Y +R+V FDEM + +W ++D
Sbjct: 269 MSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKV----FDEMDVKDVVSWTALLD 324
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y+ +L + + MP + SW T+I + Q EA+ +++ G +
Sbjct: 325 VYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISC 384
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSL--GRSLLVFFK---------------------- 270
++VLSACA L DL G +I+ RSL G S VF
Sbjct: 385 FSSVLSACATLE--DLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDT 442
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L EKN++CWNS+ + +G EA+ +F +M N+
Sbjct: 443 LPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNL 479
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAY---ARLAEL--LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD MPER ++ TM+DA R+AE L+ + P+ + +T I+ + +N+
Sbjct: 171 ARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELH 230
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
AL F K G + +T ++ AC +GA + G + I ++ + FF E
Sbjct: 231 HNALGVFRKMVSCGVRPNGITFVCMIKAC--VGAGEFGLAMSIVGSAIKSN---FF---E 282
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++ NS+ G A A +FD M ++V
Sbjct: 283 SSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDV 316
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 100/181 (55%), Gaps = 27/181 (14%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
++ +L++ + E++ TM+ YA+ +A +FN MPA D+ SW+ MI Y+++ +
Sbjct: 223 MAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSK 282
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EAL+ F+ ++SG D++TM +V+SACA++GAL+ R I +
Sbjct: 283 PMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNA 342
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C SL +L VF + +KN++ W SI A A+HG AL +F+ M E ++PN
Sbjct: 343 LIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPN 402
Query: 311 G 311
G
Sbjct: 403 G 403
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 66/154 (42%), Gaps = 34/154 (22%)
Query: 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
L+AIAF R+ HG ++ G FV TA+V Y+ + ++RRV F
Sbjct: 76 LRAIAFA----RSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRV----F 127
Query: 164 DEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
D MP+R W M+D Y Q + + EAL F+
Sbjct: 128 DGMPDRDLVAWGVMLDCYC--------------------------QARNYEEALLLFHSM 161
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
K+S DQV +ATVLS CAH L G+ I Y
Sbjct: 162 KRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSY 195
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +++ L +FN MP ++ +WT++IT+ + + R AL F K G
Sbjct: 341 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 400
Query: 230 SDQVTMATVLSACAHLGALDLGR-----GIQIY----------CRS--LGRS-------- 264
+ VT +L AC H G ++ GR +Q Y C LGR+
Sbjct: 401 PNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAAD 460
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ LR N++ W S+ A +HG LG F + PN
Sbjct: 461 LIQSMHLR-PNVVIWGSLLAACRMHGDLE--LGTFAAKKILELDPN 503
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 54/237 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------ 158
+HG V K G + +VQ A+V Y + ++R+V
Sbjct: 147 LHGCVLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGDVGD 206
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQN 210
+ R+ EMPER + WN I +AR+ ++ +F +MP D SW ++I SY++
Sbjct: 207 SRGAERVSQEMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKL 266
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------- 257
Q AL F + + SG ++T+ +VL AC +G L+LG+G+ Y
Sbjct: 267 GQCARALKVFREMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVG 326
Query: 258 ---------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C SL + VF + +++ CWN++ L++HG++ EAL +F+ M E
Sbjct: 327 NALVDMYAKCGSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVMRVE 383
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 34/151 (22%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ LA +F M DI W MI S + REAL+ FN +
Sbjct: 327 NALVDMYAKCGSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVMRVE--- 383
Query: 230 SDQVTMATVLSACAHLGALDLGR--------------GIQIY-------CR----SLGRS 264
D VT VL C+H G +D GR G++ Y CR +
Sbjct: 384 PDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQ 443
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+L + L+ ++L W + A +HG H A
Sbjct: 444 MLNYMPLKANSVL-WKMVLAACRLHGHIHHA 473
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 37/188 (19%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQ 212
++RRLFDE+P +WN ++D YA+ +LL FN+MP D+ SW+ MI + +
Sbjct: 114 LARRLFDEIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGE 173
Query: 213 FREALDAFNKTKKSGTG----SDQVTMATVLSACAHLGALDLGRGIQIY----------- 257
REAL F + +G G ++ VTM +VL ACAHLG DLGRG Q++
Sbjct: 174 HREALALFEMMEAAGAGNGVRANDVTMVSVLGACAHLG--DLGRGRQMHRYLQEHGFLLN 231
Query: 258 -------------CRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
C ++ +L VF + ++L WN++ LA+HG + E++ +F M
Sbjct: 232 LRLATSLVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEM 291
Query: 303 TYENVRPN 310
V P+
Sbjct: 292 QNSGVVPD 299
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+++D YA+ + +F +P D+ W +I + + E+++ F + + SG
Sbjct: 237 SLVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGV 296
Query: 229 GSDQVTMATVLSACAHLG 246
D++T +LSAC H G
Sbjct: 297 VPDEITYLVLLSACVHGG 314
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 152/363 (41%), Gaps = 88/363 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC----TSRFHFIDYTILVFPQMQEP 89
L C +++ L ++ +K + D + + I C + + +L FP EP
Sbjct: 4 LNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP---EP 60
Query: 90 NVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------V 123
+ F+++ +S P ++A ++ M+R + +
Sbjct: 61 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYS------YSNKFFESRRV------------------- 158
H Q K+G S +FV T ++ Y ++ K F+
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 180
Query: 159 --SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNK 211
+R +FD+M R +WN M+ Y + EL +F++MP D SW+TMI + N
Sbjct: 181 AGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNG 240
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
F E+ F + +++G ++V++ VLSAC+ G+ + G+ + +
Sbjct: 241 SFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN 300
Query: 258 --------CRSLGRSLLVFFKLREKN-LLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
C ++ + LVF ++EK ++ W S+ LA+HG EA+ +F+ MT V
Sbjct: 301 ALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVT 360
Query: 309 PNG 311
P+G
Sbjct: 361 PDG 363
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K G+S V V A++D YS ++R +F+ M E++
Sbjct: 283 LHGFVEKAGYSWIVSVNNALIDMYSRCGNV----PMARLVFEGMQEKRC----------- 327
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
I SWT+MI + + Q EA+ FN+ G D ++ ++L AC
Sbjct: 328 --------------IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHAC 373
Query: 243 AHLGALDLGR 252
+H G ++ G
Sbjct: 374 SHAGLIEEGE 383
>gi|115479117|ref|NP_001063152.1| Os09g0411600 [Oryza sativa Japonica Group]
gi|50252330|dbj|BAD28363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631385|dbj|BAF25066.1| Os09g0411600 [Oryza sativa Japonica Group]
Length = 548
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 35/202 (17%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
V T+++D Y+ + + E+RRV FDEMP R A WN M+ AY R E+ FN+M
Sbjct: 197 VLTSLLDLYAAAGQLGEARRV----FDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEM 252
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P D +WTTMI + EA++ F + +K+ D VTM +L+ACA G L LGR
Sbjct: 253 PGRDSVAWTTMIAGCVNAGKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGR 312
Query: 253 GIQIYCRSLGRS----LL-------------------VFFKLREKNLLCWNSITEALAIH 289
+ + GR LL +F + ++ + W ++ LAIH
Sbjct: 313 WVHAHVEQEGRQWRTVLLDNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIH 372
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G A EAL +F RM RP+G
Sbjct: 373 GRAEEALDLFHRMQE---RPDG 391
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y + A LF MP SWTTMI+ + + + EALD F++ ++
Sbjct: 332 NALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQER--- 388
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D T+ VL AC++ G +D GR
Sbjct: 389 PDGATLLAVLLACSNAGRVDDGR 411
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V + G + V + A+VD + R +R +FD M + +W +M++AYA
Sbjct: 267 LHKYVTEGGVARSVNLDNALVDMFGKCGCV----RYAREVFDGMEVKDVYSWTSMVNAYA 322
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +L LF MP ++ SW+ MI +YSQ Q EA+ F + +G T+ +
Sbjct: 323 KCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVS 382
Query: 238 VLSACAHLGALDLGR------------GIQI-----------YCRSLGRSLLVFFKLREK 274
VLSACA LG LDLGR G+ + C +G + +F ++ E+
Sbjct: 383 VLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAER 442
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ WN++ A A+HG + EA+ +F+++ EN+ P+
Sbjct: 443 NVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPD 478
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ LF++M ++ SW TMI +++ + Q EA+ F + K
Sbjct: 417 NALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV 476
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
DQ+T +L++C+H G + GR
Sbjct: 477 PDQITFLGLLASCSHSGLVSEGR 499
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 69/352 (19%), Positives = 116/352 (32%), Gaps = 87/352 (24%)
Query: 13 FKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR 72
+ ++ T+ + + H + + L+ C+S + L ++A + T + F A F++FC
Sbjct: 21 LPRPAWNTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAGNGFPAFGFLAFCALS 80
Query: 73 FHFIDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT---- 122
P Y F R P +A+ + ++R +
Sbjct: 81 TPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFV 140
Query: 123 -----------------------VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRV 158
+H K GF V V A+V Y+ ++ +V
Sbjct: 141 FAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKV 200
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
FDEMPER D+ SWTT++ Y++ EA
Sbjct: 201 ----FDEMPER--------------------------DVVSWTTLVDGYARAGLADEAWR 230
Query: 219 AFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------------- 257
F + G + VT+ +SA +G L G + Y
Sbjct: 231 LFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMF 290
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C + + VF + K++ W S+ A A G A +F M NV
Sbjct: 291 GKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + +NG V + A++D Y +R+LFD M + +W TM+ YA+
Sbjct: 231 HCYIEENGLKLTVPLANALMDMYMKCGNL----ESARKLFDSMTNKTMVSWTTMVVGYAQ 286
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+A LF++MP D+ W MI Y + +EAL FN+ + D+VTM +
Sbjct: 287 SGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 346
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
LSAC+ LGALD+G I Y C + +++ VF +L +N
Sbjct: 347 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 406
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W +I LA+HG AH A+ F M +V P+
Sbjct: 407 LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 440
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 79/325 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+KC SI +L+ + + +V T D F + + I+FC S + +DY + + PN F
Sbjct: 13 LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTF 72
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEV----------------------LLTTVHGQ 126
++ F +P +A+ Y +L+ + + + + G
Sbjct: 73 SWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGH 132
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V GF S +FV A++ +R++FD+ R +WN+MI+ Y R
Sbjct: 133 VLHLGFDSDIFVSNAVIHLLVSCGDL----DGARKMFDKSCVRDLVSWNSMINGYVR--- 185
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
R W EAL+ + + K G D+VTM V+S+CA L
Sbjct: 186 -----------RGWA------------YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLE 222
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
LDLGR Y C +L + +F + K ++ W ++
Sbjct: 223 DLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVV 282
Query: 285 ALAIHGFAHEALGMFDRMTYENVRP 309
A G A +FD M ++V P
Sbjct: 283 GYAQSGLLDMAWKLFDEMPDKDVVP 307
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLGRGIQ-- 255
SW I + ++ REA+ + + + GT D T + ACA L + +G I
Sbjct: 73 SWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGH 132
Query: 256 --------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+ C L + +F K ++L+ WNS+ G+A+EA
Sbjct: 133 VLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 192
Query: 296 LGMFDRMTYENVRPN 310
L + M E ++P+
Sbjct: 193 LNFYREMKVEGIKPD 207
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +ID YA+ ++ +F ++P + +WT +I+ + + A+ F++ +
Sbjct: 376 ALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDN 435
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
D+VT +LSAC H G ++ GR
Sbjct: 436 SVMPDEVTFLGLLSACCHGGLVEEGR 461
>gi|125605669|gb|EAZ44705.1| hypothetical protein OsJ_29332 [Oryza sativa Japonica Group]
Length = 548
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 35/202 (17%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
V T+++D Y+ + + E+RRV FDEMP R A WN M+ AY R E+ FN+M
Sbjct: 197 VLTSLLDLYAAAGQLGEARRV----FDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEM 252
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P D +WTTMI + EA++ F + +K+ D VTM +L+ACA G L LGR
Sbjct: 253 PGRDSVAWTTMIAGCVNAGKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGR 312
Query: 253 GIQIYCRSLGRS----LL-------------------VFFKLREKNLLCWNSITEALAIH 289
+ + GR LL +F + ++ + W ++ LAIH
Sbjct: 313 WVHAHVEQEGRQWRTVLLDNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIH 372
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G A EAL +F RM RP+G
Sbjct: 373 GRAEEALDLFHRMQE---RPDG 391
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y + A LF MP SWTTMI+ + + + EALD F++ ++
Sbjct: 332 NALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQER--- 388
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D T+ VL AC++ G +D GR
Sbjct: 389 PDGATLLAVLLACSNAGRVDDGR 411
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 32/198 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
AM+ Y S + ++R LFD+MP R ++WNTM+ YA+ A++LF++MP
Sbjct: 312 NAMIAGYVQSQQIEKARE----LFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQ 367
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR-- 252
D SW MI+ Y+Q+ Q EAL F K K+ G ++ +A LS+CA + AL+LG+
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL 427
Query: 253 -------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
G Q C S+ + VF + EK+++ WN++ A HGF
Sbjct: 428 HGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFG 487
Query: 293 HEALGMFDRMTYENVRPN 310
EAL +F+ M ++P+
Sbjct: 488 KEALALFESMKM-TIKPD 504
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 22/149 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLF+E+P R W M+ + + L +F +MP + SW MI Y Q++Q
Sbjct: 265 ARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 324
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
+A + F++ T S T+++ A G +D + ++F ++ +
Sbjct: 325 EKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAK-------------ILFDEMPQ 367
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM 302
++ + W ++ A G + EAL +F +M
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKM 396
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 44/233 (18%)
Query: 82 VFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT--VHGQVWKNGFSSPVFVQ 139
+F QM E +V ++A L A ++ A + V ++ NG S +VQ
Sbjct: 144 LFNQMPEKDVVSWNAM------LSGFAQNGFVEEARKIFDQMLVKNEISWNGLLS-AYVQ 196
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
+++ +RRLFD + + +WN ++ Y R L LF++MP
Sbjct: 197 NGRIED-------------ARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV 243
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D SW MIT Y+QN EA F + D ++S G LD
Sbjct: 244 RDKISWNIMITGYAQNGLLSEARRLFEELPI----RDVFAWTAMVSGFVQNGMLD----- 294
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ +F ++ EKN + WN++ +A +FD+M N
Sbjct: 295 --------EATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNT 339
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN I AY R + +FN M ++ MI+ Y N +F A F K
Sbjct: 63 WNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDR-- 120
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
D ++ +LS G L R + F ++ EK+++ WN++ A
Sbjct: 121 --DLISWNVMLSGYVKNGNLSAARAL-------------FNQMPEKDVVSWNAMLSGFAQ 165
Query: 289 HGFAHEALGMFDRMTYEN 306
+GF EA +FD+M +N
Sbjct: 166 NGFVEEARKIFDQMLVKN 183
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + +F + DI SW TMI Y+++ +EAL F K +
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IK 502
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT+ VLSAC+H G +D G
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKG 524
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 139/329 (42%), Gaps = 82/329 (24%)
Query: 63 KQFISFCTSRFHF-IDYTILVFPQMQEPNVF--------------------VYHAFSSLR 101
++ + C + F+ +DY VF + P++F +Y + R
Sbjct: 33 RELLLACVASFNGGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAAR 92
Query: 102 HPLQAIAFYLYMLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155
+ F Y+LRA L VHG V K G+ FV+ A+++ ++ +
Sbjct: 93 LKPDSFTF-CYLLRACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVA 151
Query: 156 R---------------------------RVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
++R+LFDE + WN M+ AYA+ E+
Sbjct: 152 GTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEME 211
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
L ++ P D+ SW T+IT Y+ +EAL+ ++ + G D+ T+ ++LS CA
Sbjct: 212 KARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCA 271
Query: 244 HLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNS 281
+LG+L GR I C + ++ VF +++E+++ WNS
Sbjct: 272 NLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNS 331
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
I LA HG A +++ F++M E + PN
Sbjct: 332 IIGGLAFHGQAEQSVQFFNKMLDEGLCPN 360
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ YA+ ++ +F++M D+ +W ++I + + Q +++ FNK G
Sbjct: 299 NALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLC 358
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
++++ VL AC+H G ++ G Q Y SL++ E N ++ I + L
Sbjct: 359 PNEISFLCVLGACSHAGLVEDG---QRY-----FSLMINRYRIEPNARHYSCIVDMLGRS 410
Query: 290 GFAHEALGMFDRMTYE 305
G EA + M E
Sbjct: 411 GLLDEAFAIVSSMRCE 426
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 32/198 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
AM+ Y S + ++R LFD+MP R ++WNTM+ YA+ A++LF++MP
Sbjct: 312 NAMIAGYVQSQQIEKARE----LFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQ 367
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR-- 252
D SW MI+ Y+Q+ Q EAL F K K+ G ++ +A LS+CA + AL+LG+
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL 427
Query: 253 -------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
G Q C S+ + VF + EK+++ WN++ A HGF
Sbjct: 428 HGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFG 487
Query: 293 HEALGMFDRMTYENVRPN 310
EAL +F+ M ++P+
Sbjct: 488 KEALALFESMKM-TIKPD 504
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLF+E+P R W M+ + + L +F +MP + SW MI Y Q++Q
Sbjct: 265 ARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 324
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
+A + F++ T S T+++ A G +D + ++F ++ +
Sbjct: 325 EKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAK-------------ILFDEMPQ 367
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
++ + W ++ A G + EAL +F +M +
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 44/233 (18%)
Query: 82 VFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT--VHGQVWKNGFSSPVFVQ 139
+F QM E +V ++A L A ++ A + V ++ NG S +VQ
Sbjct: 144 LFNQMPEKDVVSWNAM------LSGFAQNGFVEEARKIFDQMLVKNEISWNGLLS-AYVQ 196
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
+++ +RRLFD + + +WN ++ Y R L LF++MP
Sbjct: 197 NGRIED-------------ARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV 243
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D SW MIT Y+QN EA F + D ++S G LD
Sbjct: 244 RDKISWNIMITGYAQNGLLSEARRLFEELPI----RDVFAWTAMVSGFVQNGMLD----- 294
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ +F ++ EKN + WN++ +A +FD+M N
Sbjct: 295 --------EATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNT 339
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN I AY R + +FN M ++ MI+ Y N +F A F K
Sbjct: 63 WNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDR-- 120
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
D ++ +LS G L R + F ++ EK+++ WN++ A
Sbjct: 121 --DLISWNVMLSGYVKNGNLSAARAL-------------FNQMPEKDVVSWNAMLSGFAQ 165
Query: 289 HGFAHEALGMFDRMTYEN 306
+GF EA +FD+M +N
Sbjct: 166 NGFVEEARKIFDQMLVKN 183
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + +F + DI SW TMI Y+++ +EAL F K +
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IK 502
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT+ VLSAC+H G +D G
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKG 524
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 72/307 (23%)
Query: 65 FISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRA 116
I C HF + Y VF +QEPN ++ HA SS P+ ++ Y+ M+
Sbjct: 1 LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSS--DPVSSLTLYVCMVSL 58
Query: 117 EVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155
+L + +HGQV K GF ++V T+++ Y + + ++
Sbjct: 59 GLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDA 118
Query: 156 RRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQN 210
+V FD R ++ +I YA R A+ LF+++P D+ SW MI+ Y++
Sbjct: 119 YKV----FDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAET 174
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------- 257
++EAL+ F + K D+ T TVLSACAH G+++LGR + +
Sbjct: 175 GCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIV 234
Query: 258 ---------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMT 303
C + + +F L K+++ WN++ I G+ H EAL +F M
Sbjct: 235 NALIDLYSKCGEVETACGLFQGLSYKDVISWNTL-----IGGYTHMNLYKEALLLFQEML 289
Query: 304 YENVRPN 310
PN
Sbjct: 290 RSGETPN 296
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
++S R+V + D + N +ID Y++ E+ LF + D+ SW
Sbjct: 207 AHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWN 266
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---- 257
T+I Y+ ++EAL F + +SG + VTM +VL ACAHLGA+D+GR I +Y
Sbjct: 267 TLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKR 326
Query: 258 --------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
C + + VF + K+L WN++ A+HG A +
Sbjct: 327 LKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFD 386
Query: 298 MFDRMTYENVRPN 310
+F RM + P+
Sbjct: 387 LFSRMRKIGIEPD 399
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN M + SW MI ++ + + + D F++ +K G
Sbjct: 339 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEP 398
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 399 DDITFVGLLSACSHSGMLDLGRHIF-------RSMTQDYKMTPK-LEHYGCMIDLLGHSG 450
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M + M E P+G
Sbjct: 451 LFKEAEEMINTMEME---PDG 468
>gi|125563696|gb|EAZ09076.1| hypothetical protein OsI_31338 [Oryza sativa Indica Group]
Length = 548
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 35/202 (17%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
V T+++D Y+ + + E+RRV FDEMP R A WN M+ AY R E+ FN+M
Sbjct: 197 VLTSLLDLYAAAGQLGEARRV----FDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEM 252
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P D +WTTMI + EA++ F + +K+ D VTM +L+ACA G L LGR
Sbjct: 253 PGRDSVAWTTMIAGCVNAGRAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGR 312
Query: 253 GIQIYCRSLGRS----LL-------------------VFFKLREKNLLCWNSITEALAIH 289
+ + GR LL +F + ++ + W ++ LAIH
Sbjct: 313 WVHAHVEQEGRQWRTVLLDNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIH 372
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G A EAL +F RM RP+G
Sbjct: 373 GRAEEALDLFHRMQE---RPDG 391
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y + A LF MP SWTTMI+ + + + EALD F++ ++
Sbjct: 332 NALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQER--- 388
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D T+ VL AC++ G +D GR
Sbjct: 389 PDGATLLAVLLACSNAGRVDDGR 411
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/406 (22%), Positives = 165/406 (40%), Gaps = 111/406 (27%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFH 74
N PT I + I+ L C ++K+ + + ++ T D F A + + F T S F
Sbjct: 30 NHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFI 89
Query: 75 FIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV------------ 118
+DY++ +F +++ N F+++ A+ +A+ Y M++ V
Sbjct: 90 GLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 149
Query: 119 -----LLT----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV----------- 158
LL +H V K GF S V+VQ +++ Y+ ++R++
Sbjct: 150 ACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209
Query: 159 ----------------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDI 197
++ +FD+MP+R N+MI ++ ++ LFN+M D+
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDM 269
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR----- 252
SW+ +I+ Y QN + EAL F + +G D+V + +VLSACAHL + G+
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329
Query: 253 ----GIQIY--------------------------------------------CRSLGRS 264
GI+ Y C S+ ++
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKA 389
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F + EK+++ W+++ A H E L +F M +RP+
Sbjct: 390 RALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPD 435
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + G S V +Q A++ YS S + ++++ LF+ +WN+MI
Sbjct: 326 IHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQK----LFNGSHNLDQISWNSMISGCM 381
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A LF+ MP DI SW+ +I+ Y+Q+ F E L F++ + D+ + +
Sbjct: 382 KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441
Query: 238 VLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKN 275
V+SAC HL ALD G+ + Y R LG +LL VF + EK
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ LA++G +L MF M V PN
Sbjct: 502 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPN 536
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++D Y + A +FN M + SW +I + N +LD F++ K +G
Sbjct: 476 TLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIP 535
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+++T VL AC H+G +D GR
Sbjct: 536 NEITFMGVLGACRHMGLVDEGR 557
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 148/332 (44%), Gaps = 65/332 (19%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS----RFHFIDYTILVFPQ 85
I+ L+KC S++ L+ ++A ++ T + + + R F Y +F
Sbjct: 10 ISPLLRKCKSVQHLKQIHAHLLMTYLPQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKN 69
Query: 86 MQEPNVFVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTT------------------ 122
+Q+ N+F+Y++ F S R P QAI YL ++ L
Sbjct: 70 LQQRNIFMYNSMIRGYFLS-RFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELK 128
Query: 123 -----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VH V G+ + FV +A+V+ YS F+ +V+R LFD+ + W M
Sbjct: 129 RIGYLVHAHVIVLGYENDAFVVSALVEFYS----LFD-LKVARVLFDKSSGKDVVVWTVM 183
Query: 178 IDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+D Y ++ A +LF++MP ++ SW+ M+ +YS+ FRE L F + +K +
Sbjct: 184 VDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPND 243
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFK 270
+ +VL+ACAHLGA+ G + Y + G +L VF
Sbjct: 244 SVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEG 303
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ K+ WN++ A+ G ++L +FD+M
Sbjct: 304 ISNKDAGAWNAMISGFAMTGNVVKSLELFDKM 335
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y++ + +F + D +W MI+ ++ ++L+ F+K SGT +
Sbjct: 283 ALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQA 342
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
+ T ++L+AC H ++ RG++ +
Sbjct: 343 TEATFVSILAACTHAKMVE--RGLEFF 367
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 74/341 (21%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
NS P S+ + I + L++ I ++ ++A +++ + D F+ + + C S+ H
Sbjct: 28 NSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHA 86
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------- 122
IDY +F PNV++Y A F S + L+AI Y ML +L
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 123 ------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
VH + K GFSS V+ +++ Y + ++RRV F+EMPE
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRV----FEEMPE-- 200
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
D A+ D WT MI + +N++ AL+AF +
Sbjct: 201 --------DVVAK------------DTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 240
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
++ T+ VLSAC+ LGAL++GR + Y C S+ + VF
Sbjct: 241 NEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVF 300
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++++++++ +N++ L+++G + +A+ +F M +RP
Sbjct: 301 DEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 341
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R A+ +F++M D+ ++ TMI+ S N + R+A++ F
Sbjct: 281 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 340
Query: 230 SDQVTMATVLSACAHLGALDLG 251
VT VL+AC+H G +D G
Sbjct: 341 PTNVTFVGVLNACSHGGLVDFG 362
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 26/137 (18%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGAL 248
+T +I + + + EA+ +++ D MA++L AC H AL
Sbjct: 105 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 164
Query: 249 DLG---------RGIQIY--CRSLGRSLLVFFKLRE----KNLLCWNSITEALAIHGFAH 293
LG R +++Y C LG + VF ++ E K+ +CW ++ + + +
Sbjct: 165 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETN 224
Query: 294 EALGMFDRMTYENVRPN 310
AL F M ENVRPN
Sbjct: 225 RALEAFRGMQGENVRPN 241
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L A LL VHG G +S + + A++D Y + +S +F MPER +
Sbjct: 161 LGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGE----PDISFSIFSRMPERDVVS 216
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W +M+ AYA+ + L LF++M + SWT +I ++QN + EAL F + ++ G
Sbjct: 217 WTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGI 276
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQ-----------------------IYCR-SLGRS 264
T A+VLSACA L + G+ I +YC+ RS
Sbjct: 277 PPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRS 336
Query: 265 LLVFFK-LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
FK + EK+++ WNS+ A +G E+L +F+RM ++RPN
Sbjct: 337 ATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPN 383
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 64/248 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K F+ ++D YS +S + + ++F +P + +WN +I AY+
Sbjct: 36 LHSHFIKTALIFTTFLANRLIDFYSKC----DSIQSAHKVFHVLPVKNTHSWNIIISAYS 91
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS--DQVTM 235
R A L ++MP ++ S+ ++I+ + +E+L+ F K + D+ T+
Sbjct: 92 RSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTL 151
Query: 236 ATVLSACAHLGALDLGRGIQ---------------------------------IYCRSLG 262
+++ +CA LGA +L R + I+ R
Sbjct: 152 VSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPE 211
Query: 263 RSLL--------------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
R ++ +F +++EKN + W ++ A +G EAL +F++M
Sbjct: 212 RDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQM 271
Query: 303 TYENVRPN 310
E + P+
Sbjct: 272 REEGIPPS 279
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + ++ LF M DI SW ++IT ++QN E+L F + ++
Sbjct: 322 NALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIR 381
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT +LSAC H G + G
Sbjct: 382 PNHVTFLGLLSACCHTGLVSEG 403
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS +F ++R V FD M ++ TW
Sbjct: 82 SEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLV----FDFMEDKNSVTW 137
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ LF++MP D+ SWT MI + + EAL F + + SG
Sbjct: 138 NTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVK 197
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR----SLGRSL 265
D V + L+AC HLGAL G I +YCR R
Sbjct: 198 PDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFARE- 256
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF K+ ++ ++ WNS+ A +G AHE+L F +M E +P+
Sbjct: 257 -VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPD 300
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 239 NSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFK 298
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 299 PDAVTFTGALTACSHVGLVEEG 320
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 25/141 (17%)
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL- 245
L N+ + SWT+ IT S+N + EA F+ + +G + +T +LS C +
Sbjct: 20 LKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVS 79
Query: 246 -GALDLGRGIQIYCRSL-----------------------GRSLLVFFKLREKNLLCWNS 281
G+ LG + Y L G++ LVF + +KN + WN+
Sbjct: 80 SGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNT 139
Query: 282 ITEALAIHGFAHEALGMFDRM 302
+ + G + A+ +FD M
Sbjct: 140 MIDGYMRSGQVNNAVKLFDEM 160
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATWNTMIDA 180
+H K G VFVQ A++ +S +R +FD +P R +WN+MI
Sbjct: 32 IHSSTLKLGVHLDVFVQNALISAFSSCGAV----EAARAVFDMLPALVRDVVSWNSMISG 87
Query: 181 YAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y + LA +F+++P + WT+MI Y+Q+ F+EA++ F + + G +D T+
Sbjct: 88 YLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATI 147
Query: 236 ATVLSACAHLGALDLGRGIQIYCR----------------------SLGRSLLVFFKLRE 273
A VLSAC H GAL GR I +YC + ++L +F L +
Sbjct: 148 ACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQ 207
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTY-ENVRPN 310
++ W+++ LA++G + +AL +F +M ++RPN
Sbjct: 208 PDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPN 245
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 154/366 (42%), Gaps = 88/366 (24%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC----TSRFHFIDYTILVFPQ 85
I + + C +++ L ++ +K+ + D + + I C + + +L FP
Sbjct: 175 ITRKDQYCKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFP- 233
Query: 86 MQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT------------------- 122
EP+ F+++ +S P ++A ++ M+R +
Sbjct: 234 --EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRT 291
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------- 158
+H Q K+G S +FV T ++ Y +R+V
Sbjct: 292 GFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFR 351
Query: 159 ------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
+R +FD+M R +WN M+ Y + EL +F++MP D SW+TMI +
Sbjct: 352 GNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGF 411
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------- 253
S N F E+ F + ++ ++V++ VLSAC+ GA + G+
Sbjct: 412 SHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIV 471
Query: 254 ------IQIY--CRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304
I +Y C ++ + LVF ++EK +++ W S+ LA+HG EA+ +F+ MT
Sbjct: 472 SVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTE 531
Query: 305 ENVRPN 310
V P+
Sbjct: 532 SGVMPD 537
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 29/132 (21%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
T+HG V K+G+S V V A++D YS ++R +F+ M E++
Sbjct: 457 TLHGFVEKSGYSWIVSVNNALIDMYSRCGNV----PMARLVFEGMQEKR----------- 501
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
I SWT+MI + + EA+ FN+ +SG D+++ ++L A
Sbjct: 502 --------------SIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYA 547
Query: 242 CAHLGALDLGRG 253
C+H G + G G
Sbjct: 548 CSHAGLIKEGEG 559
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 149/330 (45%), Gaps = 63/330 (19%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY-- 94
C SI +++ +A ++ T +A +F+ + Y +F Q+ +P++F+Y
Sbjct: 189 CKSINQIKQTHANLITTAQITLPVIANKFLK--NVALASLTYAHKLFDQIPQPDLFIYNT 246
Query: 95 ----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW---------------------- 128
H+ S + L +IA + ++R + V+
Sbjct: 247 MIKSHSMSPHSY-LDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAV 305
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR----- 183
K G VFV A++ + + ++R V FD +R F +WNTMI AY
Sbjct: 306 KVGLDGNVFVVNALIGMFGKWGRVEDARNV----FDSAVDRDFYSWNTMIGAYVGSGNMV 361
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LA+ LF++M D+ SW+T+I Y Q F EALD F+K +S ++ TM + L+AC+
Sbjct: 362 LAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACS 421
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR-EKNLLCWN 280
+L ALD G+ I +Y C + + VF + + ++ + WN
Sbjct: 422 NLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWN 481
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ A+HG EA+ +F++M E V PN
Sbjct: 482 AMIGGFAMHGKPEEAINVFEKMKVEKVSPN 511
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFN----KMPAWDIRSWTTMITSYSQN 210
RR +M +R A+ +ID YA+ E+ +F+ K W W MI ++ +
Sbjct: 437 RRDNIKMNDRLLAS---LIDMYAKCGEIDSASSVFHEHKVKRKVW---PWNAMIGGFAMH 490
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+ EA++ F K K ++VT +L+AC+H
Sbjct: 491 GKPEEAINVFEKMKVEKVSPNKVTFIALLNACSH 524
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 145/331 (43%), Gaps = 58/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC--TSRFHFIDYTILVFPQMQEPNV 91
L KC +I +++ + + + D + A + ISFC +S + + +F ++ +
Sbjct: 17 LDKCRTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRST 76
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQ 126
F+++ AF+ P +AI + ML + L H Q
Sbjct: 77 FIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQ 136
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
K G+ FVQ +V ++ F +R+LFD R TW +I+ Y R +
Sbjct: 137 SIKLGWEFYDFVQNGLVHMFA----IFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQ 192
Query: 187 LL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+L F+KMP + SW+ MIT Y + F EAL+ FN SG + + ++A
Sbjct: 193 VLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINA 252
Query: 242 CAHLGALDLGRGIQIYC--------RSLGRSLL--------------VFFKLREKNLLCW 279
CA LGALD GR I Y R +G +L+ +F +LR +++ +
Sbjct: 253 CASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVY 312
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA HG + A+ +F+RM E V PN
Sbjct: 313 TCLISGLANHGQSATAVELFERMHSEGVVPN 343
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ +A +F ++ D+ +T +I+ + + Q A++ F + G
Sbjct: 283 ALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVP 342
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
++VT +VL+AC+ +G +D +G++I+
Sbjct: 343 NEVTFVSVLNACSRMGLVD--KGLRIF 367
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 73/327 (22%)
Query: 46 VYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAF 97
++A ++KT + + + + FC HF Y I VF +QEPN+ ++ HA
Sbjct: 7 IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66
Query: 98 SSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNGFSSPV 136
SS P+ A+ YL M+ +L + +HG V K GF +
Sbjct: 67 SS--DPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNK 191
+V T+++ Y+ + + ++R+V FD R ++ +I Y A+ LF++
Sbjct: 125 YVHTSLISMYAQNGRLEDARKV----FDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDL 250
+P D+ SW MI+ Y + ++EAL+ F + + D+ TM TV+SACA +++L
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240
Query: 251 GRGIQIYCRSLG----------------------RSLLVFFKLREKNLLCWNSITEALAI 288
GR + + G + +F L K+++ WN++ I
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTL-----I 295
Query: 289 HGFAH-----EALGMFDRMTYENVRPN 310
G+ H EAL +F M PN
Sbjct: 296 GGYTHMNLYKEALLLFQEMLRSGETPN 322
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 35/192 (18%)
Query: 154 ESRRVSRRLFDEMPERKFAT----WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
+S + R + + + FA+ N +ID Y++ E+ LF+ + D+ SW T+I
Sbjct: 236 DSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLI 295
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----- 259
Y+ ++EAL F + +SG + VTM ++L ACAHLGA+D+GR I +Y
Sbjct: 296 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKG 355
Query: 260 ------SLGRSLLVFF---------------KLREKNLLCWNSITEALAIHGFAHEALGM 298
SL SL+ + + ++L WN++ A+HG A+ A +
Sbjct: 356 VVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDI 415
Query: 299 FDRMTYENVRPN 310
F RM + P+
Sbjct: 416 FSRMRMNGIEPD 427
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 176 TMIDAYARLAEL-----LFNK-MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ID YA+ ++ +F+ M + +W MI+ ++ + + A D F++ + +G
Sbjct: 366 SLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIE 425
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D +T +LSAC+H G LDLGR I RS+ R + KL + + + L
Sbjct: 426 PDDITFVGLLSACSHSGMLDLGRNI---FRSMTRGYEITPKLEH-----YGCMIDLLGHS 477
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G EA M + M E P+G
Sbjct: 478 GLFKEAEEMINTMPME---PDG 496
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 31/205 (15%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AEL 187
+S V +++V Y ++R V FDEM R WN MI Y + A
Sbjct: 110 ASDAHVSSSLVQLYCTCGHVADARSV----FDEMAVRDVVAWNVMIAGYVKAGDQAHARE 165
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF+ MP ++ SWTT+I Y+Q K+ +A++ F + + G +D V + +VL+AC LGA
Sbjct: 166 LFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGA 225
Query: 248 LDLG---------RG-----------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEA 285
+DLG RG I +Y C + +++ VF + EK+++ W ++
Sbjct: 226 VDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAG 285
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
A+HG +A+ MF RM EN+ PN
Sbjct: 286 FALHGLGLQAVEMFCRMERENMAPN 310
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDI 197
VD + ++F V R L E+P N++ID Y + + +F M +
Sbjct: 226 VDLGEWVHRFV----VRRGLCQEIP-----LMNSIIDMYMKCGCIEKAVEVFEGMEEKSV 276
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+WTT+I ++ + +A++ F + ++ + VT +LSAC+H+G DLGR
Sbjct: 277 VTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGR 331
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M++ Y+ K E++R LFDEMPER + N+M+ + + + LF++MP D
Sbjct: 102 MINGYAIVGKIDEAKR----LFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRD 157
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW +M+ Y+Q + EAL F++ G + T+ ++LSACAHLGALD G +
Sbjct: 158 VVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHT 217
Query: 257 Y----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
Y C + + VF + K++L WN+I +AI G E
Sbjct: 218 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKE 277
Query: 295 ALGMFDRMTYENVRPN 310
A +F M V PN
Sbjct: 278 AQQLFKEMKEAGVEPN 293
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V K+GF ++ ++++ Y+ +++LF+ +R +WN MID Y
Sbjct: 22 VHTHV-KSGFECDSYIVSSLIHLYANGKDL----GAAKQLFNLCSDRDLVSWNAMIDGYV 76
Query: 183 RLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ E ++F++M D+ SW TMI Y+ + EA F D++
Sbjct: 77 KRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLF----------DEMPERN 126
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
++S + L + C ++ + +F ++ ++++ WNS+ A G +EAL
Sbjct: 127 LVSXNSMLXGF-------VKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 179
Query: 298 MFDRMTYENVRPN 310
+FD+M V+P+
Sbjct: 180 LFDQMXAVGVKPS 192
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LA +FN M + D+ +W T+I + +EA F + K++G
Sbjct: 233 ALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEP 292
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ +T +LSAC+H G +D G+ + + C S + E + + + + LA G
Sbjct: 293 NDITFVAMLSACSHAGMVDEGQKL-LDCMSSSYGI-------EPKVEHYGCVIDLLARAG 344
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA+ + M E PN
Sbjct: 345 LLEEAMELIGTMPME---PN 361
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 29/183 (15%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNK 211
++R LFD M +R +W T+ID YA+++E +F+ MP DI +W +I+ Y Q+
Sbjct: 395 EIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSG 454
Query: 212 QFREALDAFNKTK--KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC--------RSL 261
+ +EAL F + + KSG DQVT+ + LSACA LGA+D+G I Y R+L
Sbjct: 455 RPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNL 514
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
SL+ VF + K++ W+++ LA+HG A+ +F M V
Sbjct: 515 ATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQV 574
Query: 308 RPN 310
+PN
Sbjct: 575 KPN 577
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 35/317 (11%)
Query: 4 KYVRAIITSFKKNSFPTSVSFIRIHIIANQL-KKCSSIKELECVYATIVKTNANLDCFLA 62
+++ +I S ++S PT S ++ L ++C+S K+L+ ++A +++TN D + A
Sbjct: 115 EWINSIGRSIVQHSSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAA 174
Query: 63 KQ-FISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAE 117
+ F + S F +DY VF Q+ +PN++ ++ A ++ P+Q++ ++ ML
Sbjct: 175 SELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLH-- 232
Query: 118 VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
N F+ PV ++ K + D++ N++
Sbjct: 233 ------DSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDV-----FVLNSL 281
Query: 178 IDAYAR-----LAELLFNKMPA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
I YA LA L+F + DI SW +M+T + Q +ALD F + + G
Sbjct: 282 IHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHP 341
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
+ VTM +V+SACA L LGR + C + R+ ++ NL N+ + G
Sbjct: 342 NAVTMVSVMSACAKTMNLTLGRKV---CDYIDRNEMMM------NLNVCNATIDMFVKCG 392
Query: 291 FAHEALGMFDRMTYENV 307
A G+FD M +V
Sbjct: 393 EVEIARGLFDNMEKRDV 409
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +H Q+ + + + + ++S+ F + +R++FD++P+ +WN +I
Sbjct: 155 LKQIHAQMLRTNKLHDPYAASELFTAAAFSS--FSALDYARKVFDQIPQPNLYSWNILIR 212
Query: 180 AYARLAE-----LLFNKM----PAWDIR-SWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
A A ++ L+F +M P + ++ +I + ++ + F K+ G
Sbjct: 213 ALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFG 272
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF--FKLREKNLLCWNSITEALA 287
D + +++ A G LDL + LVF + K+++ WNS+
Sbjct: 273 DDVFVLNSLIHFYASCGHLDL-------------AYLVFEMIEGNNKDIVSWNSMVTGFV 319
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
G+ +AL +F+RM E V PN
Sbjct: 320 QGGYPDKALDLFERMRNEGVHPN 342
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R AT ++ID Y++ ++ +F+ + D+ W+ MI + + + A++ F
Sbjct: 512 RNLAT--SLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDM 569
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGR 252
+++ + VT +L AC+H G +D G+
Sbjct: 570 QETQVKPNSVTFTNLLCACSHSGLVDEGK 598
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 30/184 (16%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R++FDEMP R +WNTM+ YA E+ LF++MP D+ SWT MI+ Y+Q +
Sbjct: 228 LARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARC 287
Query: 213 FREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----------SL 261
+ E L+ F + +S ++VTM +VLSACAHL AL+ GR + +L
Sbjct: 288 YTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNL 347
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G +L+ +F L +KN+ WN++ LA++G ++ +F++M
Sbjct: 348 GAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGE 407
Query: 308 RPNG 311
+PNG
Sbjct: 408 KPNG 411
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 25/191 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAY 181
VH Q + G VFV ++ Y+ F R R +FD TWNTM+ Y
Sbjct: 101 VHAQAVRRGLLVDVFVVNTLLAMYAA----FRDTRSMREVFDSCAGVADLVTWNTMLGGY 156
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ E+ +F +MP + SW+ M+ +Y+ + A + F++ G + V+
Sbjct: 157 VKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMP--AIGRNVVSWN 214
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
++++ A G L L R + F ++ +NL+ WN++ A++G ++A
Sbjct: 215 SMITGFARHGLLPLARKM-------------FDEMPVRNLVSWNTMVRGYAVNGEMNDAR 261
Query: 297 GMFDRMTYENV 307
+FDRM ++V
Sbjct: 262 ELFDRMPEKDV 272
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+ +F +ID Y++ LA +F+ + ++ +W +IT + N R ++D F +
Sbjct: 342 DSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQ 401
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++SG + +T VL+ACAH G +D GR
Sbjct: 402 MRRSGEKPNGITFVGVLTACAHGGLVDEGR 431
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 141/326 (43%), Gaps = 54/326 (16%)
Query: 35 KKCSSIKEL---ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV 91
K C+S+ L + ++A +K + D + ++ S+ + +F M E NV
Sbjct: 54 KACASLPFLHYVKALHAESIKAGSESDVIIGTALLT-TYSKCGVVRDARNLFDTMPERNV 112
Query: 92 FVYHAFSS--LRHPLQAIAFYLY---MLRAEVLLTTVHGQVWKNGFSSP----------- 135
++A S LR+ A+ ++ + +V + + G +NG +
Sbjct: 113 VTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHE 172
Query: 136 ---VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AEL 187
V T MVD Y+ + +R +F+ MPER W++MI Y + A
Sbjct: 173 LKNVVTWTVMVDGYARIGEM----EAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAA 228
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+F+ +P ++ W +MI Y QN +AL AF G D+ T+ +VLSACA LG
Sbjct: 229 VFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGH 288
Query: 248 LDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEA 285
LD+G+ I C L + LVF EKN+ CWN++
Sbjct: 289 LDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISG 348
Query: 286 LAIHGFAHEALGMFDRMTYENVRPNG 311
AI+G E L F RM N+RP+G
Sbjct: 349 FAINGKCSEVLEFFGRMEESNIRPDG 374
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 40/270 (14%)
Query: 68 FCTSRFHF----IDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV 123
FC+ R H + +L + Q + V+ L ++ F Y + +
Sbjct: 16 FCSIRNHIQQGSLRCALLAYKQTRHEGVYDSSVAPLLFKACASLPFLHY-------VKAL 68
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K G S V + TA++ YS R +R LFD MPER TWN MI Y R
Sbjct: 69 HAESIKAGSESDVIIGTALLTTYSKCGVV----RDARNLFDTMPERNVVTWNAMISGYLR 124
Query: 184 LAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ L+F KM +W+ MI +++N A F++ + VT +
Sbjct: 125 NGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHE--LKNVVTWTVM 182
Query: 239 LSACAHLGALDLGRGI-----QIYC-------------RSLGRSLLVFFKLREKNLLCWN 280
+ A +G ++ R + + C ++ + VF + +NL WN
Sbjct: 183 VDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWN 242
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ +GF +AL F+ M E P+
Sbjct: 243 SMIAGYVQNGFGEKALLAFEGMGAEGFEPD 272
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ A L+F +I W MI+ ++ N + E L+ F + ++S D
Sbjct: 314 LVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPD 373
Query: 232 QVTMATVLSACAHLG 246
+T TVLSACAH G
Sbjct: 374 GITFLTVLSACAHRG 388
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 150/343 (43%), Gaps = 69/343 (20%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQM 86
H N L KC I L+ +++ I+K+ + F + I FC S + Y + +F +
Sbjct: 26 HPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSI 85
Query: 87 --QEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT------------------ 122
Q PN+F+++ A S P ++ + ML + + +
Sbjct: 86 HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H K V T+++ YS + R +R +FD+ R ++ +I
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGEL----RHARLVFDKSTLRDAVSFTALIT 201
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y + LF+++PA D+ SW MI Y Q+ +F EAL F + +++ +Q T
Sbjct: 202 GYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQST 261
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
M +VLSAC HL +L+LG+ I + C +G + +F +
Sbjct: 262 MVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME 321
Query: 273 EKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
+K+++ WN++ I G+ H EAL +F+ M ENV PN
Sbjct: 322 DKDVILWNTM-----IGGYCHLSLYEEALVLFEVMLRENVTPN 359
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y++ E+ LF+ M D+ W TMI Y + EAL F +
Sbjct: 298 NALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVT 357
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY--------------------------CRSLGR 263
+ VT VL ACA LGALDLG+ + Y C +
Sbjct: 358 PNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEV 417
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF + ++L WN++ LA++G A ALG+F+ M E +P+
Sbjct: 418 AEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPD 464
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 174 WNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W ++I YA+ +AE +F M + + SW MI+ + N AL F + G
Sbjct: 402 WTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGF 461
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
D +T VLSAC G ++LG Y S+ + + KL+ + + + LA
Sbjct: 462 QPDDITFVGVLSACTQAGFVELG---HRYFSSMNKDYGISPKLQH-----YGCMIDLLAR 513
Query: 289 HGFAHEALGMFDRMTYENVRPNG 311
G EA + M E P+G
Sbjct: 514 SGKFDEAKVLMGNMEME---PDG 533
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 31/217 (14%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
T+H V NG++ +QTA+++ Y+ ++R+++D + + M+ Y
Sbjct: 243 TIHEFVKDNGYAIDSHLQTALINMYANCGAM----DLARKIYDGLSSKHLIVSTAMLSGY 298
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+L A +F++M D+ W+ MI+ Y+++ Q +EAL F++ + + DQ+TM
Sbjct: 299 AKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITML 358
Query: 237 TVLSACAHLGAL-------------DLGRGIQI---------YCRSLGRSLLVFFKLREK 274
+V+SAC+H+GAL GR + + C +L ++ VF + K
Sbjct: 359 SVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRK 418
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
N++ W+S+ A A+HG A A+ +F RM N+ PNG
Sbjct: 419 NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 107/295 (36%), Gaps = 92/295 (31%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHAFS--SLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128
SR F + TI ++ ++ N F FS SL + ++ + + L +HG
Sbjct: 96 SRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLE-------IHGLAS 148
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL 188
K GF F+QT ++ Y+ RR+ D A LL
Sbjct: 149 KLGFVDDPFIQTGLIAMYASC----------RRIMD--------------------ARLL 178
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F+KM D +W +I Y QN + +AL F + S D V + TVLSAC H G L
Sbjct: 179 FDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNL 238
Query: 249 DLGRGIQIYCRSLGRSL------------------------------------------- 265
GR I + + G ++
Sbjct: 239 SYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGY 298
Query: 266 ----------LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F ++ E++L+CW+++ A EAL +FD M + P+
Sbjct: 299 AKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPD 353
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 169 RKFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R + N +ID YA+ L+ F MP ++ SW++MI +++ + A+ F +
Sbjct: 387 RALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRM 446
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRG---------------------IQIYCRS-- 260
K+ + VT VL AC H G ++ G + +YCR+
Sbjct: 447 KEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANF 506
Query: 261 LGRSLLVFFKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L +++ + + N++ W S+ A +HG A LG F + P+
Sbjct: 507 LRKAIELIETMPFAPNVIIWGSLMSACQVHGEAE--LGEFAAKRLLELEPD 555
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 77/282 (27%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT--------- 122
I YT +F + +P+ F+++ A S L A+ FY ML + ++ +T
Sbjct: 58 IAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKA 117
Query: 123 ------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
VH V+ +G++S FVQ A++ Y+ S + RV+R++FDEM
Sbjct: 118 CADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSC----TPRVARKVFDEM---- 169
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
P I +W +MI+ Y QN EA++ FNK ++S
Sbjct: 170 ----------------------PQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEP 207
Query: 231 DQVTMATVLSACAHLGALD---------LGRGIQI-------------YCRSLGRSLLVF 268
D T +VLSAC+ LG+LD +G GI + C +GR+ VF
Sbjct: 208 DSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVF 267
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + E N++ W ++ +HG+ EA+ +F RM V PN
Sbjct: 268 YSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPN 309
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 65/340 (19%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNV 91
Q+ +C + + L+ ++A +KT A + + F T S I Y F Q+ PN
Sbjct: 21 QISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNC 80
Query: 92 FVYHAF---------SSLRH--PLQAIAFYLYMLRAEVLLTT------------------ 122
F ++ L H L+A+ ++ +ML ++
Sbjct: 81 FSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIE 140
Query: 123 ----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
+HG V K G S FV++ +V Y ++ + + E WN MI
Sbjct: 141 EGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVL---FYQTRLEGNVVLWNVMI 197
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
D Y R+ +L LF+ MP + SW MI+ +QN F+EA++ F+ + + V
Sbjct: 198 DGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYV 257
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ +VL A + LGA++LG+ + ++ C S+ +++ VF +
Sbjct: 258 TLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGI 317
Query: 272 R-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R +KN + W++I LA+HG A +AL F RM V P+
Sbjct: 318 RNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPS 357
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
+W+ +I + + + R+ALD F + +++G V VLSAC+H G ++ GR I
Sbjct: 325 TWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSI 380
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 29/198 (14%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNK 191
F ++D Y R +R LFD+MPER WN+MID YAR + LF +
Sbjct: 213 FSWATLIDGYGKQGGAGVDR--ARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEE 270
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP ++ SW+ +I + + +EAL+ F + G D++ +SACA LGAL+ G
Sbjct: 271 MPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQG 330
Query: 252 RGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R + Y C L ++L+F + E++++ WN + L H
Sbjct: 331 RWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTH 390
Query: 290 GFAHEALGMFDRMTYENV 307
GF +A+ +F RM E+V
Sbjct: 391 GFGLDAVTLFHRMEAESV 408
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP--ERKFATWNTMIDA 180
VH + + G ++ +F A++ S+ + + R R++FDE R +WN+M+
Sbjct: 135 VHAEAVRRGLAADLFTVNALI---SFYCRILDIRS-GRKVFDEAGGVSRDLVSWNSMVAG 190
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y E+ +F++MP D SW T+I Y KQ +D + D V
Sbjct: 191 YVGCGEMGLAQEMFDEMPQKDTFSWATLIDGY--GKQGGAGVDRARELFDQMPERDLVCW 248
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ A G +D R + F ++ E+N++ W+ + + G A EA
Sbjct: 249 NSMIDGYARHGRMDEARSL-------------FEEMPERNVISWSIVIDGHVSCGEAKEA 295
Query: 296 LGMFDRMTYENVRPN 310
L F M +RP+
Sbjct: 296 LEYFQSMLRCGLRPD 310
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI---- 178
+H + K S V VQTA++D Y ++ +F+ M ER TWN MI
Sbjct: 333 LHSYLEKKKLLSDVVVQTALIDMYVKCGCL----DLAMLIFESMAERSVVTWNVMIVGLG 388
Query: 179 -DAYARLAELLFNKMPAW----DIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+ A LF++M A D S M+T+ + E L+ F++ KK
Sbjct: 389 THGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKD 441
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ID Y + LA L+F M + +W MI + +A+ F++ +
Sbjct: 350 TALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVA 409
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCR 259
D +++ +L+AC H G + G++I+ R
Sbjct: 410 VDDLSVLGMLTACTHAGLVS--EGLEIFHR 437
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 32/225 (14%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L+ L VHGQV GF S + + +++VD YS + R +R LFDEM +
Sbjct: 208 LKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEM----RCARTLFDEMLVKDIHA 263
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W T++ YA+ ++ LF++MP + SW+ +I+ Y++N EALD F K K G
Sbjct: 264 WTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGI 323
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
+Q T ++ L ACA + AL G+ + Y C L S
Sbjct: 324 NPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCC 383
Query: 267 VFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K +++ WN++ ALA +G +A+ MF+ M ++P+
Sbjct: 384 VFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPD 428
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-SRRLFDEMPERKFATWNTMIDAY 181
VH + GF P T +V N+ F R V +R++FD+M R +WN M+ Y
Sbjct: 84 VHLHLKHTGFKRP----TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGY 139
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+L ++ LF++M D+ SW T++ +Y++ F EA+ + ++ G + + A
Sbjct: 140 AKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFA 199
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
VL C L L L + + G+ L+ F NL+ +SI +A + G A
Sbjct: 200 GVLILCVKLKELQLAKQVH------GQVLVAGFL---SNLVLSSSIVDAYSKCGEMRCAR 250
Query: 297 GMFDRMTYENV 307
+FD M +++
Sbjct: 251 TLFDEMLVKDI 261
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
M++A + L+ NK D+ W TMI++ +QN +A+ FN +SG D++T
Sbjct: 377 MLEASCCVFHLMGNKQ---DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFI 433
Query: 237 TVLSACAHLGALDLG 251
+LSAC+H G + G
Sbjct: 434 VILSACSHSGLVQEG 448
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 68/306 (22%)
Query: 64 QFISFCTSRFHF--IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAE 117
+ + FC HF Y I VF +QEPN +++ ++ P+ A+ Y+ M+
Sbjct: 2 KLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLG 61
Query: 118 VLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESR 156
+L + +HG V K G+ ++V T+++ Y+ + + ++
Sbjct: 62 LLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAH 121
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNK 211
+V FD R ++ +I YA R A+ +F+++P D+ SW MI+ Y++
Sbjct: 122 KV----FDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETG 177
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
++EAL+ F + K+ D+ TM TVLSACA +++LGR + +
Sbjct: 178 SYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVN 237
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTY 304
C + + +F L K+++ WN++ I G+ H EAL +F M
Sbjct: 238 ALIDLYSKCGQVETACGLFEGLSCKDVVSWNTL-----IGGYTHMNLYKEALLLFQEMLR 292
Query: 305 ENVRPN 310
PN
Sbjct: 293 SGESPN 298
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ ++ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 237 NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 296
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VT+ ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 297 PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAH 356
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A+ +F RM + P+
Sbjct: 357 QVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPD 401
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN M + SW MI ++ + + D F++ +K+G
Sbjct: 341 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEP 400
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I +S+ + + KL + + + L G
Sbjct: 401 DDITFVGLLSACSHSGKLDLGRHI---FKSMTQDYDITPKLEH-----YGCMIDLLGHSG 452
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M M E P+G
Sbjct: 453 LFKEAKEMIKTMPME---PDG 470
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 28/175 (16%)
Query: 164 DEMPERKFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALD 218
D+ E T + +ID Y + +L+ F+ M DI +W MIT Y+QN EA+
Sbjct: 256 DKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMT 315
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------- 257
FN +++G +++TM VLSACA +GALDLG+ +++Y
Sbjct: 316 LFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYA 375
Query: 258 -CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
C SL +L VF + KN + WN++ ALA HG A EAL +F RM VRPN
Sbjct: 376 KCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPN 430
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 129/323 (39%), Gaps = 83/323 (25%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+C S K ++ ++A ++ + + FL + I Y L+F QM PN + ++
Sbjct: 41 QCRSKKPMQQIHAQMIINSLSKPNFLLPRIIDL-----KDFAYASLLFTQMPNPNDYAFN 95
Query: 96 AF-----SSLRHPLQAIAFYLYM---------------------LRAEVLLTTVHGQVWK 129
++ R+ AI Y M L A H V K
Sbjct: 96 VMIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLK 155
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLF 189
GF++ + +++ Y+ +K +R+V FDE+ ER
Sbjct: 156 MGFNNDSHINHSLITMYAKCSKLDSARKV----FDEILER-------------------- 191
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
DI SW +MI+ Y++ REA+ F + ++ G ++T+ ++L AC LG L
Sbjct: 192 ------DIVSWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLA 245
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG+ ++ C L + VF + EK+++ WN++ A
Sbjct: 246 LGKWVEALIGDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYA 305
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G + EA+ +F+ M + PN
Sbjct: 306 QNGASDEAMTLFNVMREAGITPN 328
>gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 575
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 139/324 (42%), Gaps = 57/324 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF- 92
L+ C S++EL + ++ + D F A + + S F I YT+L+F ++ PN F
Sbjct: 56 LQSCQSVRELFQFHGHLITSGLFNDHFWANRVL-LQASEFGDIVYTVLIFRHIKVPNTFC 114
Query: 93 ---VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVW 128
V A+S PL+A+ Y L + + HGQ +
Sbjct: 115 VNRVIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAF 174
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
KNG S + + +++ Y + R++FDEM + +WN+++ AYAR+ +L
Sbjct: 175 KNGVDSVMVLGNSLIHMYGCCKHI----ELGRKVFDEMSTQDLVSWNSIVTAYARVGDLY 230
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F+ MP ++ SW MI+ Y + A+ F G + TM VLSAC+
Sbjct: 231 TAHDMFDVMPERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACS 290
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
L+ GR + + C + + VF +L +NL+ WN+
Sbjct: 291 RSARLNEGRSVHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNA 350
Query: 282 ITEALAIHGFAHEALGMFDRMTYE 305
+ ++HG + L +F+ M E
Sbjct: 351 MILGHSLHGNPKDGLELFEEMVGE 374
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VHG +++ VF+ TA+VD YS ++ V+RR+FD + R TWN MI +
Sbjct: 300 SVHGFMYRASMKFCVFINTALVDMYSKCHRV----SVARRVFDRLMIRNLVTWNAMILGH 355
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQ-NKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+ + P + + M+ + N++ K DQ+T VL
Sbjct: 356 S------LHGNPKDGLELFEEMVGELREINEETGNGKKFKQDEGKRKVFPDQITFIGVLC 409
Query: 241 ACAHLGAL 248
ACA G L
Sbjct: 410 ACARAGLL 417
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------- 253
+I +YS + EA+ + + +G D T ++ SACA G GR
Sbjct: 118 VIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNG 177
Query: 254 -----------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
I +Y C+ + VF ++ ++L+ WNSI A A G + A MFD
Sbjct: 178 VDSVMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMFD 237
Query: 301 RMTYENV 307
M NV
Sbjct: 238 VMPERNV 244
>gi|297735091|emb|CBI17453.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L C+ I +++ V+A I + CF LAK + Y LVF Q++ PN F
Sbjct: 46 LHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPF 105
Query: 93 VYHAF---SSLRHP-LQAIAFYLYMLRAEV---------------------LLTTVHGQ- 126
++ A +L+ P ++++ Y M R + L VH Q
Sbjct: 106 LWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQT 165
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ GF S ++V ++D Y R+FDEM +R +W ++I AYA++
Sbjct: 166 ILIGGFGSDLYVGNTLIDMYVKCGCL----GCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF+ +P D+ +WT M+T Y+QN + REAL+ F + + +G +D+VT+ V+SA
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281
Query: 242 CAHLGA 247
CA LGA
Sbjct: 282 CAQLGA 287
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 169 RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
R + +D Y RL +F ++ + WT +I Y+ F E++ +N ++ G
Sbjct: 79 RTLTKLDVPMDPYPRL---VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGI 135
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQ-----------------------IYCRSLGRSL 265
G T +L AC+ ++LGR + + C LG
Sbjct: 136 GPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGH 195
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
VF ++ +++++ W S+ A A G A +FD + +++
Sbjct: 196 RVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDM 237
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 139/325 (42%), Gaps = 79/325 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVFV 93
K+C S+K LE ++A +++T + F+ + I FC S +DY + VF +++ P+ F+
Sbjct: 59 KQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFL 118
Query: 94 YH----AFSSLRHPLQAIAFYLYM---------------------LRAEVLLTTVHGQVW 128
++ R P +A FY M L +++L +H V
Sbjct: 119 WNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVL 178
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL 188
K+G VFV+ +V Y F+ + LF+EMP+
Sbjct: 179 KHGLEEHVFVRNTLVHMYG----MFKDIEAATHLFEEMPKSYLV---------------- 218
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
+W T+I +++EA++ F + +SG D T LSACA LG L
Sbjct: 219 ----------AWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGEL 268
Query: 249 DLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
D+GR I +Y C + + +F K++ +N++ WN++ L
Sbjct: 269 DIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGL 328
Query: 287 AIHGFAHEALGMFDRMTYENV-RPN 310
A+HG EAL +F +M E + PN
Sbjct: 329 AMHGHGDEALELFSKMLEEKLATPN 353
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID YA+ + +FNKM +I SW TMI + + EAL+ F+K +
Sbjct: 291 NSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLA 350
Query: 230 S-DQVTMATVLSACAHLGALDLGR----------GIQIYCRS-------LGRSLLVFFKL 271
+ ++VT VL AC+H G ++ GR IQ + LGR+ LV
Sbjct: 351 TPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAY 410
Query: 272 R-------EKNLLCWNSITEALAIHG 290
R E N + W ++ A +HG
Sbjct: 411 RLIKSMPIESNSIVWRTLLAACRVHG 436
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 31/203 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFN 190
VF+ M+ Y ++ E+R+V FD MP R +WNTMI YA LA +F+
Sbjct: 23 VFLCNVMLAAYVSRSEVAEARKV----FDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFD 78
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
D SW++MI++Y+++++ +EAL+ + + + D +T+ +V+SAC+ LGAL +
Sbjct: 79 GTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAV 138
Query: 251 GRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALAI 288
G + + S LG +L+ VF ++ EK++ W+S+ LA
Sbjct: 139 GAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLAN 198
Query: 289 HGFAHEALGMFDRMTYENVRPNG 311
HG HE+L +F +M E ++PNG
Sbjct: 199 HGLGHESLSLFSKMISEGMKPNG 221
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
++F ES R+ L K T +ID YA+ ++ +F++MP D+++W++MI
Sbjct: 143 HRFVESNRIELDL-------KLGT--ALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMI 193
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
+ + E+L F+K G + VT VL AC H+G + G+ Y RS+
Sbjct: 194 IGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKK---YFRSMNEV 250
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
+ E + + + + L G EA + MT+E
Sbjct: 251 HGI-----EPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFE 286
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 31/201 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V++ +++D Y ++RR+FD M E+ +WN M+ YA +L LFN
Sbjct: 293 VYLGNSLIDMYGRRGLV----DLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFN 348
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+MP ++ SWT MI+ +Q Q +AL F + + D++T+++VLSAC+HLG LD
Sbjct: 349 EMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDT 408
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + Y C + ++L VF +++K+ + W S+ LA+
Sbjct: 409 GQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAV 468
Query: 289 HGFAHEALGMFDRMTYENVRP 309
+GF +F +M + ++P
Sbjct: 469 NGFVDNVFELFSQMLRDGLQP 489
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 144/326 (44%), Gaps = 86/326 (26%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVF 92
+K SIK ++ +A +++T+ + + I S+ SR H ++ F Q+ +P +
Sbjct: 64 IKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSH-LNKANFAFIQIGQPTLL 122
Query: 93 VYH----AFSSLRHPLQAIAFY----------------LYMLRA-----EVLLTTV-HGQ 126
+++ S +P +AI Y +Y+ +A +VL V H Q
Sbjct: 123 IFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQ 182
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V K GF S +F++ +++ Y Y F ++++FD+M +R
Sbjct: 183 VLKLGFGSYLFIENSLIRMYGY----FGELGYAQKVFDKMDDR----------------- 221
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL- 245
D+ SW ++I YSQ +F+E LD FN +++ +D VTM V+ AC++L
Sbjct: 222 ---------DLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLC 272
Query: 246 --GALD----------------LGRG-IQIYCRSLGRSLL-----VFFKLREKNLLCWNS 281
G +D LG I +Y R R L+ VF +++EKN++ WN+
Sbjct: 273 EDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGR---RGLVDLARRVFDRMQEKNIVSWNA 329
Query: 282 ITEALAIHGFAHEALGMFDRMTYENV 307
+ A G A +F+ M NV
Sbjct: 330 MLTGYATAGDLVAAKKLFNEMPIRNV 355
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + + +F+ M D SWT+MI + N + F++ + G
Sbjct: 429 NALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQ 488
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ +L AC H G +D G
Sbjct: 489 PTHGSFIGILLACTHAGLVDKG 510
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%)
Query: 39 SIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFVYHAF 97
+ KE+ ++A + D L F+ + S ++DY + + ++P +F ++
Sbjct: 18 TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77
Query: 98 --SSLRHPLQAIAFYLYM-------------------------LRAEVLLTTVHGQVWKN 130
+ + P+ +F Y LR VHG +
Sbjct: 78 IRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRR 137
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF + VQT ++ Y+ +V F+ +P F M+ A AR ++
Sbjct: 138 GFDNDPHVQTGLISLYAELGCLDSCHKV----FNSIPCPDFVCRTAMVTACARCGDVVFA 193
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF MP D +W MI+ Y+Q + REAL+ F+ + G + V M +VLSAC L
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GALD GR Y C + +++ VF+ + EKN+ W+S
Sbjct: 254 GALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSAL 313
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
LA++GF + L +F M + V PN
Sbjct: 314 NGLAMNGFGEKCLELFSLMKQDGVTPN 340
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 122 TVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++H V K G + V V TA+VD YS + ++ +FDEM R +WNTMID
Sbjct: 112 SIHAYVRKLGLDTENVMVGTALVDMYSKCGQL----DLAWLMFDEMHVRNSVSWNTMIDG 167
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
R E+ LF++M D SWT+MI + + F +AL+ F + + +G D VT+
Sbjct: 168 CMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTI 227
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
+VL+ACA+LGAL LG I + C + + VF ++ +
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++L+ WNS+ A++G A EAL F+ M E RP+G
Sbjct: 288 RSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDG 325
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y+R LA +F +MP + SW +MI ++ N EAL+ FN +K G
Sbjct: 263 NSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFR 322
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D V+ L+AC+H G +D G
Sbjct: 323 PDGVSFTGALTACSHSGLVDEG 344
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 28/183 (15%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNK 211
+ +R+LFD MP R +WNTM++ YA E LF +MP ++ SW +I Y+ N
Sbjct: 279 KAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNG 338
Query: 212 QFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG-------- 262
F E L F + G + T+ TVLSACA LGALDLG+ + +Y ++G
Sbjct: 339 CFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVG 398
Query: 263 --------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
++ VF + K+L+ WNS+ LA HG +AL +F +M +
Sbjct: 399 NALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEK 458
Query: 309 PNG 311
P+G
Sbjct: 459 PDG 461
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 34/222 (15%)
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIA-FYLYMLRA---EVLLTTVHGQVWKNGFSS 134
T+ + + N F + +HP + ++ +LR+ LL V Q+ +GF
Sbjct: 38 TLTFYSEWARNNTFFIDDTLTQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQY 97
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-----DAYARLAELLF 189
+V +V ++ + +R LFD P+ K WN + +A+ R LF
Sbjct: 98 NGYVAPNVVTSWVGLKQMAHARH----LFDHFPDPKVELWNAISRGYFHNAFYREVVFLF 153
Query: 190 NKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
KM + D+R ++ ++ S ++ F E + + K G +Q T+
Sbjct: 154 GKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTL------- 206
Query: 246 GALDLGRGIQIYC--RSLGRSLLVFFKLREKNLLCWNSITEA 285
I +Y R++G + +F + E+N++ W S+
Sbjct: 207 --------IDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISG 240
>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
Length = 752
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 122/217 (56%), Gaps = 31/217 (14%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T +H K GFSS +FV ++++D Y + +++R+ F+ +PE+ WN++I
Sbjct: 404 TRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRI----FNSLPEKNTVCWNSLISG 459
Query: 181 YA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ AE LF KMPA + SW TMI+ Y++N++F +AL+ F SG ++T+
Sbjct: 460 YSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITL 519
Query: 236 ATVLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLRE 273
++VL ACA+L +L++G+ GI+ +Y +S L S +F+++ E
Sbjct: 520 SSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPE 579
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KN + W ++ + LA +GFA E++ +F+ M + PN
Sbjct: 580 KNNITWTAMVQGLAENGFAEESILLFENMIANRIAPN 616
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 27/177 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+ R+FD+M R +W ++D YA L +L + + MP + SW+T+I + Q
Sbjct: 305 AAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGD 364
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGALDLG---------R 252
EAL +++ G + ++VLSACA H AL +G
Sbjct: 365 SAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSS 424
Query: 253 GIQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
I +Y C+ + +F L EKN +CWNS+ + +G EA +F +M N
Sbjct: 425 LIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNA 481
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MPE+ ++ TM+DA + + L+ + P + + +T MI + +N+
Sbjct: 173 ARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGFVRNELH 232
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
++A F K + + VT+ V+ AC G DL G+ L + + L E
Sbjct: 233 KDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVV--------GLAIKWNLFE 284
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K++ NS+ G A A +FD M +V
Sbjct: 285 KSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDV 318
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 28/183 (15%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNK 211
+ +R+LFD MP R +WNTM++ YA E LF +MP ++ SW +I Y+ N
Sbjct: 237 KAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNG 296
Query: 212 QFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG-------- 262
F E L F + G + T+ TVLSACA LGALDLG+ + +Y ++G
Sbjct: 297 CFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVG 356
Query: 263 --------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
++ VF + K+L+ WNS+ LA HG +AL +F +M +
Sbjct: 357 NALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEK 416
Query: 309 PNG 311
P+G
Sbjct: 417 PDG 419
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 97 FSSLRHPLQAIA-FYLYMLRA---EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
+S+ +HP + ++ +LR+ LL V Q+ +GF +V +V ++ +
Sbjct: 14 YSAQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQM 73
Query: 153 FESRRVSRRLFDEMPERKFATWNTMI-----DAYARLAELLFNKMPAWDIR----SWTTM 203
+R LFD P+ K WN + +A+ R LF KM + D+R ++ +
Sbjct: 74 AHARH----LFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLV 129
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC--RSL 261
+ S ++ F E + + K G +Q T+ I +Y R++
Sbjct: 130 LKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTL---------------IDVYSGGRAI 174
Query: 262 GRSLLVFFKLREKNLLCWNSITEA 285
G + +F + E+N++ W S+
Sbjct: 175 GSAYKLFVGMLERNIVAWTSMISG 198
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 32/225 (14%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L+ L VHGQV GF S + + +++VD Y+ + R +R LFDEM +
Sbjct: 208 LKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEM----RCARTLFDEMLVKDIHA 263
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W T++ YA+ ++ LF++MP + SW+ +I+ Y++N EALD F K K G
Sbjct: 264 WTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGI 323
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
+Q T ++ L ACA + AL G+ + Y C L S
Sbjct: 324 NPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCC 383
Query: 267 VFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K +++ WN++ ALA +G +A+ MF+ M ++P+
Sbjct: 384 VFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPD 428
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-SRRLFDEMPERKFATWNTMIDAY 181
VH + GF P T +V N+ F R V +R++FD+M R +WN M+ Y
Sbjct: 84 VHLHLKHTGFKRP----TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGY 139
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+L ++ LF++M D+ SW T++ +Y++ F EA+ + ++ G + + A
Sbjct: 140 AKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFA 199
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
VL C L L L + + G+ L+ F NL+ +SI +A A G A
Sbjct: 200 GVLILCVKLKELQLAKQVH------GQVLVAGFL---SNLVLSSSIVDAYAKCGEMRCAR 250
Query: 297 GMFDRMTYENV 307
+FD M +++
Sbjct: 251 TLFDEMLVKDI 261
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
M++A + L+ NK D+ W TMI++ +QN +A+ FN +SG D++T
Sbjct: 377 MLEASCCVFHLMGNKQ---DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFI 433
Query: 237 TVLSACAHLGALDLG 251
+LSAC+H G + G
Sbjct: 434 VILSACSHSGLVQEG 448
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 60/292 (20%)
Query: 76 IDYTILVFPQMQ-EPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT-------- 122
IDY +L+ + P VF+++ FS R P ++ L +R VL
Sbjct: 38 IDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTF 97
Query: 123 ----------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
HG V KN F VFV+ +++ YS + ++R V FDE
Sbjct: 98 LFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWV----FDES 153
Query: 167 PERKFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
E +WN+MID R +L F+KM + SW MI+ Y+QN Q +EAL F
Sbjct: 154 SELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFR 213
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CR 259
+ + + + +VLSAC+ LGALD G + Y C
Sbjct: 214 EMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCG 273
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
S+ ++ F R++++ + + LA++G + EAL +F++M E + P+G
Sbjct: 274 SIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDG 325
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ LA F+ D+ ++T I+ + N EAL F + K G
Sbjct: 264 ALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISP 323
Query: 231 DQVTMATVLSACAHLGALDLG 251
D V+ VL AC+H G ++ G
Sbjct: 324 DGVSYIAVLCACSHAGWVEKG 344
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 32/219 (14%)
Query: 121 TTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+++HG K G + V V TA++D YS + +R+V F + + +WNTM++
Sbjct: 114 SSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKV----FYNLGVKNSVSWNTMLN 169
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
+ R E+ LF++MP D SWT +I ++ +AL+ F++ ++SG +D V+
Sbjct: 170 GFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVS 229
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
+ VL+ACA LGAL LG + + C + + VF K+
Sbjct: 230 IIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMA 289
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ L+ WNSI A++GFA E+L F M E +P+G
Sbjct: 290 KRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDG 328
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 25/139 (17%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG-- 246
FN I WT+ + Y +N Q EA F + + +G + +T T+LSACA
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 247 ---------------ALDLGRG------IQIY--CRSLGRSLLVFFKLREKNLLCWNSIT 283
LD G I +Y C LG + VF+ L KN + WN++
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 284 EALAIHGFAHEALGMFDRM 302
+G A+ +FD M
Sbjct: 169 NGFMRNGEIELAIQLFDEM 187
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y+R A +F KM + SW ++I ++ N E+L+ F +K G
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFK 325
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
D V+ L+AC+H G ++ +G++++
Sbjct: 326 PDGVSYTGALTACSHAGLVN--KGLELF 351
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 27/181 (14%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQ 212
++++LF ++ R MI Y+R+ A L+F++M D+ W+ MI+ Y+++ +
Sbjct: 1 MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
+EAL+ F++ + G DQVT+ +V+SACA LG LD + I +Y
Sbjct: 61 PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C +LG + VF K++ +N++ W S+ A AIHG A AL F +M EN++PN
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180
Query: 311 G 311
G
Sbjct: 181 G 181
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ L +F KM + ++ SWT+MI +++ + AL F + K
Sbjct: 119 NALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIK 178
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ VT VL AC+H G ++ GR
Sbjct: 179 PNGVTFVGVLYACSHAGLVEEGR 201
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 145/360 (40%), Gaps = 89/360 (24%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF-HFIDYTILVFPQMQEPNVFVY 94
KC S++ ++ + A I KT N ++ + + C + Y +F ++ P+VF+Y
Sbjct: 14 KCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMY 73
Query: 95 H----AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHGQVW 128
+ S P A+ ++ M R V L +H
Sbjct: 74 NTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAV 133
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE----------------------- 165
G S +FV T ++ Y+ +R+V FDE
Sbjct: 134 GYGLDSHLFVGTTLISMYAECACLVFARKV----FDEMIEPNIVAWNAIVAACFRCEGVK 189
Query: 166 --------MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
MP R +WN M+ Y + EL +F KMP D SW+TMI ++ N
Sbjct: 190 DAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGN 249
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
F +A F + ++ G ++V++ VLSACA GA + GR + +
Sbjct: 250 FNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNA 309
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C +L + LVF + ++ + W ++ +A+HG+ EA+ +F+ M N++P+
Sbjct: 310 LIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPD 369
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +A L+F+ M SWT MI + + EA+ FN+ ++S
Sbjct: 308 NALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIK 367
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D +T ++L AC+H G +DLG
Sbjct: 368 PDSITFISILYACSHAGLVDLG 389
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 168/398 (42%), Gaps = 98/398 (24%)
Query: 6 VRAIITSFKKNSFPTSVSFI--------RIHIIANQLKKCSSIKELECVYATIVKTNANL 57
++++ FK S P + F H I+ + C L V+A I++ L
Sbjct: 1 MKSLYVLFKPKSSPAKIYFPADRRASPDESHFIS-LIHTCKDTVSLRLVHAHILRRGV-L 58
Query: 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF-----------SSLRHPLQA 106
+A Q +S C+S DY++ +F +E N FV++A S+RH +
Sbjct: 59 SSRVAAQLVS-CSSLLKSPDYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILM 117
Query: 107 IAF--------YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
+ + ++L++ L +H KN FV+ ++VD Y+ + +
Sbjct: 118 LTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAKTGQL 177
Query: 153 ------FES--RRVSRR-----------------------LFDEMPERKFATWNTMIDAY 181
FE R+ + LF MPER +W+T+I Y
Sbjct: 178 NHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGY 237
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
EL LF MP ++ SWTT+I +SQ + A+ + + + G ++ T+A
Sbjct: 238 VDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVA 297
Query: 237 TVLSACAHLGALDLGRGIQIYC----------RSLGRSLL--------------VFFKLR 272
VLSAC+ GA LG GI+I+ R++G SLL VF +
Sbjct: 298 AVLSACSKSGA--LGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMN 355
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K++L W ++ + A+HG H+A+ F +M Y +P+
Sbjct: 356 HKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPD 393
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 82 VFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
+F M E NV + + FS AI+ Y ML + G +
Sbjct: 249 LFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML--------------EKGLKPNEY 294
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
A++ S S R+ + D + A +++D YA+ E+ +F+ M
Sbjct: 295 TVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNM 354
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
DI SWT MI ++ + +F +A+ F + SG D+V VL+AC + G +DLG
Sbjct: 355 NHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLG 413
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 45/322 (13%)
Query: 34 LKKC----SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
L KC ++++ ++ I+K F+ + F + + VF +M E
Sbjct: 16 LLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPER 75
Query: 90 NVFVYHAFSS---LRHPLQAIAFYLYMLRAEVLLT--TVHGQVWKNG---FSSPVFVQTA 141
+V +++ S R +Q+ L + ++T +V + K G + VF Q
Sbjct: 76 DVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMP 135
Query: 142 MVDNYSYSNKF-----FESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNK 191
+ + S+++ R ++ +F +MPE+ +W MI YA + AE +FN
Sbjct: 136 LRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNH 195
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDL 250
MP ++ SW MI+ Y N +F +AL F+ +G DQ T+ ++LSACAHLG+L+
Sbjct: 196 MPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEH 255
Query: 251 GRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALAI 288
G+ I Y + LG +L+ VF + ++ ++ W ++ LA+
Sbjct: 256 GKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAV 315
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
+G EA+ +FD+M E +P+
Sbjct: 316 NGKCREAINLFDKMCLEGTKPD 337
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ +F+ M I +WTTM++ + N + REA++ F+K GT
Sbjct: 276 NALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTK 335
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D V VLSAC H G ++ G+
Sbjct: 336 PDDVIFIAVLSACTHGGLVEEGK 358
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS + ++R V FD M ++ TW
Sbjct: 63 SETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLV----FDYMDDKNSVTW 118
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ LF+KMP D+ SWT M+ + + EAL F + + SG
Sbjct: 119 NTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVK 178
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR----SLGRSL 265
D V + L+AC +LGAL LG I +YCR R
Sbjct: 179 PDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARE- 237
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF K+ ++ ++ WNS+ A +G AHE+L F +M E +PN
Sbjct: 238 -VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPN 281
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 220 NSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFK 279
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT L+AC+H+G +D G
Sbjct: 280 PNAVTFTGALTACSHVGLVDEG 301
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 168/403 (41%), Gaps = 118/403 (29%)
Query: 25 IRIHIIAN--QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILV 82
+R H+ N L KC++ ++ ++A ++K + + D ++A + I+ S + + + V
Sbjct: 18 LRRHLEENITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIA-SYSLTNNLSSAVNV 76
Query: 83 FPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV-------------------- 118
F Q+ +PNV +Y+ A+S + ++ + +L+ V
Sbjct: 77 FNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGS 136
Query: 119 -----LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF---------FESRRV------ 158
L+ VH V K GF +FV +++D Y E R V
Sbjct: 137 SSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSM 196
Query: 159 ------------SRRLFDEMPERKFATWNTMIDAYAR----------------------- 183
+ ++FDEMPER +WNTM+D + +
Sbjct: 197 VGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWS 256
Query: 184 -------------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+A +LF++ P ++ WTT+I+ Y++ Q +EA++ ++ +KSG
Sbjct: 257 TMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRL 316
Query: 231 DQVTMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVF 268
D ++L+ACA G L LG+ I +Y C + + VF
Sbjct: 317 DDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVF 376
Query: 269 FKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ EK+L+ WNS+ IHG +++ +F+ M E +P+
Sbjct: 377 NGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPD 419
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N+ ID YA+ + +FN M D+ SW +MI + + ++++ FN + G
Sbjct: 357 NSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGF 416
Query: 229 GSDQVTMATVLSACAHLGALDLGRG 253
D+ T +L AC H G ++ GRG
Sbjct: 417 KPDRYTFIGLLCACTHAGLVNEGRG 441
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 82/329 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFV 93
+ CS++++ + ++A + +L+ + + ISFC S + Y L+F Q+Q PN+F
Sbjct: 12 QSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFA 71
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAE----------------------VLLTTVHGQV 127
Y+ A+S P A+ ++ ML E +L +H V
Sbjct: 72 YNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWV 131
Query: 128 WKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
KNG SS VQTA+V Y+ ++R+ LFDE+P WN +++ Y R
Sbjct: 132 LKNGVASSDRHVQTALVRFYAECCAMGDARK----LFDEIPNLDVVQWNVLLNGYVR--- 184
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
R EAL+AF SG D+ + T L CA LG
Sbjct: 185 -----------RGLAP------------EALNAFRNMLVSGVEPDEFCLTTALKGCAQLG 221
Query: 247 ALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
AL G+ I Y C + RS+ VF + ++N+ W+++
Sbjct: 222 ALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMI 281
Query: 284 EALAIHGFAHEALGMFDRMTYEN-VRPNG 311
A+HG +A+ +RM E+ +RP+G
Sbjct: 282 GGFALHGHVRKAMQCLERMQVEDGLRPDG 310
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 34/222 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE-------MPERKFATWN 175
+HG K GF S VFVQ ++V+ YS + +R+V + D+ + + +WN
Sbjct: 137 IHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWN 196
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
MI+ Y + + LF +MP WD+ +W MI Y N QF +A+ F K G+
Sbjct: 197 AMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRP 256
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
T+ +VLSA + L L GR I Y C + +L VF
Sbjct: 257 SHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVF 316
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++K + W +I L IHG A+ AL +F M ++PN
Sbjct: 317 RAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPN 358
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR----------LAELLFNKMPAWDI 197
YS+ +R +FD + R WNT+I Y EL+ +P D
Sbjct: 58 YSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLP--DN 115
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
+ +I ++ +E K G GSD ++++ + G +D R +++
Sbjct: 116 FTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCAR--KVF 173
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ + ++++ L + NL+ WN++ G AL +F +M
Sbjct: 174 DGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQM 218
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 85/275 (30%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------- 158
T +HG V KNG ++V TA+VD Y +R+V
Sbjct: 145 TLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARC 204
Query: 159 -----SRRLFDEMPERKFATWNTMIDAYARL----------------------------- 184
+RRLFDEM +R +N MID Y ++
Sbjct: 205 GDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYC 264
Query: 185 -------AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
A+L+F+ MP ++ +W MI Y QN++ +AL+ F + + + ++VT+
Sbjct: 265 GNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVC 324
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL A A LGALDLGR I + C + ++ L F + E+
Sbjct: 325 VLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERE 384
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A++G A EAL +F RM E PN
Sbjct: 385 TASWNALINGFAVNGCAKEALEVFARMIEEGFGPN 419
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131
++ L+F M E NVF ++A + R A+ + M A V V
Sbjct: 269 VENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEV-------- 320
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE----- 186
+ V V A+ D + + R R+ D R +ID YA+ E
Sbjct: 321 --TVVCVLPAVADLGALDLGRWIHRFALRKKLD----RSARIGTALIDMYAKCGEITKAK 374
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
L F M + SW +I ++ N +EAL+ F + + G G ++VTM VLSAC H G
Sbjct: 375 LAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCG 434
Query: 247 ALDLGR 252
++ GR
Sbjct: 435 LVEEGR 440
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 35/217 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V K+GFS+ +F+Q ++D YS + R+V FD+MP+R TWN+++
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV----FDKMPQRNIYTWNSVVTGLT 97
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+L A+ LF MP D +W +M++ ++Q+ + EAL F K G ++ + A+
Sbjct: 98 KLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFAS 157
Query: 238 VLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLRE 273
VLSAC+ L D+ +G+Q++ C ++ + VF ++ +
Sbjct: 158 VLSACSGLN--DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ WNS+ +G A EAL +F M V P+
Sbjct: 216 RNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 142/342 (41%), Gaps = 67/342 (19%)
Query: 31 ANQLKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
A+ L CS + ++ V++ I K+ D ++ + S+ ++ VF +M
Sbjct: 156 ASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM-YSKCGNVNDAQRVFDEMG 214
Query: 88 EPNVFVYHA----FSSLRHPLQAIAFYLYMLRA-----EVLLTTV--------------- 123
+ NV +++ F ++A+ + ML + EV L +V
Sbjct: 215 DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274
Query: 124 -HGQVWKNG-FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
HG+V KN + + + A VD Y+ ++ E+R + FD MP R +MI Y
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFI----FDSMPIRNVIAETSMISGY 330
Query: 182 A-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A + A L+F KM ++ SW +I Y+QN + EAL F K+ + A
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFA 390
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------------CRSLGRSLLVF 268
+L ACA L L LG ++ C + LVF
Sbjct: 391 NILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVF 450
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ E++ + WN++ A +G+ +EAL +F M +P+
Sbjct: 451 RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD 492
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 163 FDEMPERKFATWNTMIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F E N++ID Y + L+F KM D SW MI ++QN EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLL 277
+ F + +SG D +TM VLSAC H G ++ GR Y S+ R V LR+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRH---YFSSMTRDFGV-APLRDH--- 531
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYE 305
+ + + L GF EA M + M +
Sbjct: 532 -YTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 57/282 (20%)
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+F M E + Y+A FSS P +++ Y +LR E + T
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
VH QV + GF + FV + +VD Y+ R +RR+F EM + +N
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI----RDARRVFQEMEAKTVVMYN 216
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+I R A+ LF M D +WTTM+T +QN EALD F + + G G
Sbjct: 217 TLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGI 276
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
DQ T ++L+AC L AL+ G+ I Y CRS+ + VF
Sbjct: 277 DQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF 336
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +N++ W ++ + + EA+ F M + ++P+
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPD 378
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 56/213 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + + VFV +A+VD YS
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSI------------------------------ 329
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
RLAE +F +M +I SWT MI Y QN EA+ AF++ + G D T+ +V+S+C
Sbjct: 330 RLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSC 389
Query: 243 AHLGALDLGRGIQIYCRSLGRSLL------------------------VFFKLREKNLLC 278
A+L +L+ G Q +C +L L+ +F ++ + +
Sbjct: 390 ANLASLE--EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W ++ A G A E + +F++M ++P+G
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT ++T Y+Q + +E +D F K +G
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLK 477
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT VLSAC+ G ++ G
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKG 499
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA--RLA---EL 187
+ P F+ ++ Y+ S + +RRV FDEMP+ T N ++ A A RL E
Sbjct: 45 APPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMER 100
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLG 246
LF MP D S+ +IT +S ++ + ++ ++T++ ++ + L
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 247 ALDLGRGIQIYCRSLG 262
LG + LG
Sbjct: 161 DRALGHSVHCQVLRLG 176
>gi|297605095|ref|NP_001056652.2| Os06g0125600 [Oryza sativa Japonica Group]
gi|255676676|dbj|BAF18566.2| Os06g0125600 [Oryza sativa Japonica Group]
Length = 377
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 33/199 (16%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAEL 187
SS F+ +A+V Y+ S E+R+V FDE+ R A +N ++ AYA+ AE
Sbjct: 119 SSDPFLSSALVSFYAKSKLLVEARKV----FDELTCRDTAVYNALLSAYAKGGLVDSAEK 174
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACAHLG 246
LF +MP ++ SWT M++ Y+QN + EA++ F + +++G +++T+++VL ACA +G
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
Query: 247 ALDLGRGIQIYCRSLG--RSLLVFFKL---------------------REKNLLCWNSIT 283
A++LGR ++ Y R G R++ V L R+++L WNS+
Sbjct: 235 AMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMI 294
Query: 284 EALAIHGFAHEALGMFDRM 302
A A+HG EAL +F ++
Sbjct: 295 MAFAVHGLWREALALFYKL 313
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 31/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V +NG V A+++ Y K + ++ R+FD M + +WN++I + R
Sbjct: 364 HGYVLRNGLEGWDNVCNAIINMYMKCGK----QEMACRVFDRMLNKTRVSWNSLIAGFVR 419
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ +F+ MP D+ SW TMI + Q F+EA++ F + G +D+VTM V
Sbjct: 420 NGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGV 479
Query: 239 LSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNL 276
SAC +LGALDL + I Y + LG +L+ VF K+ ++++
Sbjct: 480 ASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDV 539
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W + A+A+ G A+ +FD M + ++P+G
Sbjct: 540 SAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDG 574
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 129/310 (41%), Gaps = 44/310 (14%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT--SRFHFIDYTILVFPQMQEPNVF 92
KKC ++ EL+ +++ I K N IS CT F ++Y E N
Sbjct: 41 KKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGI 100
Query: 93 V--YHAFSSLRHPLQAIAF---YLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS 147
+ ++ FSSL A + + R + + V + F+ P FV +A + +
Sbjct: 101 MGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAV-----PDNFTFP-FVLSACTKSAA 154
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
+ F + + F ER N++I Y E+ +F+KM ++ SWT+
Sbjct: 155 LTEGFQVHGAIVKMGF----ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTS 210
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI-------- 254
+I Y++ ++EA+ F + + G + VTM V+SACA L L LG +
Sbjct: 211 LIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE 270
Query: 255 --------------QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+ C ++ ++ +F + +KNL+ +N+I G A E L +
Sbjct: 271 LEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLG 330
Query: 301 RMTYENVRPN 310
M RP+
Sbjct: 331 EMLKHGPRPD 340
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D +AR + +FNKM D+ +WT I + + A++ F++ + G
Sbjct: 513 ALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKP 572
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D V +L+A +H G ++ +G I+ RS+ + + + + + + + L G
Sbjct: 573 DGVVFVALLTALSHGGLVE--QGWHIF-----RSMKDIYGIAPQAVH-YGCMVDLLGRAG 624
Query: 291 FAHEALGMFDRMTYENVRPN 310
EAL + + M E PN
Sbjct: 625 LLSEALSLINSMQME---PN 641
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y + + +F++ ++ + T++++Y + RE L + K G
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D++TM + +SAC+ L + G+ Y C + V
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
F ++ K + WNS+ +G A +F M
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM 433
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 55/312 (17%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP------NV 91
+S K + C + ++ ++ N++ F+ I T ++Q P ++
Sbjct: 3 ASAKAISCTHPSLHLSHPNIESFVWNNLIRASTRS------------RVQNPAFPPALSL 50
Query: 92 FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
++ ++ L F L + +H Q+ G ++ FVQT++++ YS
Sbjct: 51 YLRMRLHAVLPDLHTFPFLLQSINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCG- 109
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITS 206
+ +R+ FDE+ + +WN +I A A+ +A LF++MP ++ SW+ MI
Sbjct: 110 ---TPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHG 166
Query: 207 YSQNKQFREALDAFNKTKKSGTGS----DQVTMATVLSACAHLGALDLGRGIQIY----- 257
Y +++ AL F ++ ++ GS ++ TM++VLSACA LGAL G+ + Y
Sbjct: 167 YVSCGEYKAALSLF-RSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTG 225
Query: 258 -----------------CRSLGRSLLVFFKL-REKNLLCWNSITEALAIHGFAHEALGMF 299
C S+ R+ +F L EK+++ W+++ A ++HG + E L +F
Sbjct: 226 MKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELF 285
Query: 300 DRMTYENVRPNG 311
RM + VRPN
Sbjct: 286 ARMVNDGVRPNA 297
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 176 TMIDAYARL-----AELLFNKM-PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ID YA+ A+ +F+ + P D+ +W+ MIT++S + E L+ F + G
Sbjct: 235 SLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVR 294
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT VL AC H G + G
Sbjct: 295 PNAVTFVAVLCACVHGGLVSEG 316
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 29/181 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R++FDEM R +WN M+D YA+ +L +F MP D+ SW++MI + ++
Sbjct: 11 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEY 70
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------- 257
AL F + + G +++VTM +VL ACAHLGAL+ GR + Y
Sbjct: 71 GVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSL 130
Query: 258 ------CRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C ++ ++ VF + + ++L WN+I LA HG HE+L +F M + P
Sbjct: 131 MDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVP 190
Query: 310 N 310
+
Sbjct: 191 D 191
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 54/237 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------ 158
+HG+V K G +VQ A+V Y + ++R+V
Sbjct: 147 LHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGATGD 206
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQN 210
L EMPER + WN I +AR+ ++ +F +MP D SW ++I Y++
Sbjct: 207 LHGVELLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKL 266
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------- 257
++ +AL+ F + + SG ++T+ +VL ACA +G L+LG+G+ Y
Sbjct: 267 GRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVG 326
Query: 258 ---------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C SL + +F + +++ CWN++ ++HG++ +AL +FD M E
Sbjct: 327 NALVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMRVE 383
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 45/322 (13%)
Query: 34 LKKC----SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
L KC ++++ ++ I+K F+ + F + + VF +M E
Sbjct: 80 LLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPER 139
Query: 90 NVFVYHAFSS---LRHPLQAIAFYLYMLRAEVLLT--TVHGQVWKNG---FSSPVFVQTA 141
+V +++ S R +Q+ L + ++T +V + K G + VF Q
Sbjct: 140 DVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMP 199
Query: 142 MVDNYSYSNKF-----FESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNK 191
+ + S+++ R ++ +F +MPE+ +W MI YA + AE +FN
Sbjct: 200 LRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNH 259
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDL 250
MP ++ SW MI+ Y N +F +AL F+ +G DQ T+ ++LSACAHLG+L+
Sbjct: 260 MPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEH 319
Query: 251 GRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALAI 288
G+ I Y + LG +L+ VF + ++ ++ W ++ LA+
Sbjct: 320 GKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAV 379
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
+G EA+ +FD+M E +P+
Sbjct: 380 NGKCREAINLFDKMCLEGTKPD 401
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ +F+ M I +WTTM++ + N + REA++ F+K GT
Sbjct: 340 NALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTK 399
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D V VLSAC H G ++ G+ +
Sbjct: 400 PDDVIFIAVLSACTHGGLVEEGKRV 424
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+LFDEMPER +W MI Y+ L LF+ MP ++ SW MI+ Y QNKQ
Sbjct: 204 ARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQP 263
Query: 214 REALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCR--------SLGRS 264
EAL F++ + + + D+VT+ +VL A A LGALDLG + + R ++G +
Sbjct: 264 YEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTA 323
Query: 265 LL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ VF + EK WN++ A AI+G A EALG+F M ++ PN
Sbjct: 324 LIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPN 383
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 76 IDYTILVFPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYMLRA------EVLLTTVHG 125
+D +F M E N+F ++A S + P +A+ + M EV + +V
Sbjct: 232 LDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSV-- 289
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
P +D + ++F +++ +R +ID YA+
Sbjct: 290 --------LPAIADLGALDLGGWVHRFVRRKKL---------DRATNVGTALIDMYAKCG 332
Query: 186 ELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
E++ F+ MP + SW +I +++ N + +EAL F + G +++TM VLS
Sbjct: 333 EIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLS 392
Query: 241 ACAHLGALDLGR 252
AC H G ++ G+
Sbjct: 393 ACNHSGLVEEGK 404
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q+ G FVQT++++ YS F +R++FDE+ + +WN++I+A
Sbjct: 103 IHTQIHHFGLVHDSFVQTSLINMYSSCGNF----SFARQIFDEIAQPDLPSWNSIINASV 158
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK---SGTGSDQVT 234
++ A LF+ MP ++ +W+ MI + + +++EAL F + + ++ T
Sbjct: 159 KVGLVDVARGLFDVMPERNVITWSCMINGFVKCGEYKEALALFREMQMLEVRDVKPNEFT 218
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL- 271
M++VLSAC LGAL+ G+ Y C S+ R+ LVF L
Sbjct: 219 MSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVLGTSLIDMYAKCGSIDRARLVFDNLG 278
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+++ W+++ LA+HG+ E L +F +M + +RPN
Sbjct: 279 SNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQGLRPN 317
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 176 TMIDAYARL-----AELLFNKMPA-WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ID YA+ A L+F+ + + D+ +W+ MI+ + + E L+ F+K G
Sbjct: 256 SLIDMYAKCGSIDRARLVFDNLGSNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQGLR 315
Query: 230 SDQVTMATVLSACAHLG 246
+ VT VL AC H G
Sbjct: 316 PNNVTFLAVLYACVHGG 332
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 57/282 (20%)
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+F M E + Y+A FSS P +++ Y +LR E + T
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
VH QV + GF + FV + +VD Y+ R +RR+F EM + +N
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI----RDARRVFQEMEAKTVVMYN 216
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+I R A+ LF M D +WTTM+T +QN EALD F + + G G
Sbjct: 217 TLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGI 276
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
DQ T ++L+AC L AL+ G+ I Y CRS+ + VF
Sbjct: 277 DQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF 336
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +N++ W ++ + + EA+ F M + ++P+
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPD 378
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 56/213 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + + VFV +A+VD YS
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSI------------------------------ 329
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
RLAE +F +M +I SWT MI Y QN EA+ AF++ + G D T+ +V+S+C
Sbjct: 330 RLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSC 389
Query: 243 AHLGALDLGRGIQIYCRSLGRSLL------------------------VFFKLREKNLLC 278
A+L +L+ G Q +C +L L+ +F ++ + +
Sbjct: 390 ANLASLE--EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W ++ A G A E + +F++M ++P+G
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT ++T Y+Q + +E +D F K +G
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLK 477
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT VLSAC+ G ++ G
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKG 499
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA--RLA---EL 187
+ P F+ ++ Y+ S + +RRV FDEMP+ T N ++ A A RL E
Sbjct: 45 APPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMER 100
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLG 246
LF MP D S+ +IT +S ++ + ++ ++T++ ++ + L
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 247 ALDLGRGIQIYCRSLG 262
LG + LG
Sbjct: 161 DRALGHSVHCQVLRLG 176
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 61/306 (19%)
Query: 67 SFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV---- 118
S S H + VF +Q P+ +++ A + + P ++I F+ ML +
Sbjct: 67 SGSNSSAHHLLSAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDA 126
Query: 119 -----LLTT------------VHGQVWKNGF-SSPVFVQTAMVDNYS-YSNKFFESRRVS 159
LL VH +V NG+ SS VF+ + +V+ Y+ + +
Sbjct: 127 HTYSFLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASA 186
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFR 214
R++FD+M ER WN+M+ Y R L +F +MP ++ SWTTMI+ Y++N + +
Sbjct: 187 RKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCK 246
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
+AL+ F++ +K+G DQV + L+ACA LG L +G I Y
Sbjct: 247 QALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLN 306
Query: 258 ---------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF---DRMTYE 305
C + + VF + E++ + W S+ A A G+A L +F R+
Sbjct: 307 NALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTS 366
Query: 306 NVRPNG 311
RP+G
Sbjct: 367 EARPDG 372
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I YA + +F MP SWT++IT++++ + L+ F ++ GT
Sbjct: 307 NALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTS 366
Query: 230 S---DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
D +T VL AC+H G +D GR Q++ + R + K R ++ C + + L
Sbjct: 367 EARPDGITFIGVLCACSHAGLVDEGR--QLFKDMIQRWGI---KPRIEHYGC---MVDLL 418
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
+ GF EA + M V+PN
Sbjct: 419 SRAGFLDEAQELIATMP---VKPN 439
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 39/255 (15%)
Query: 90 NVFVYHAFSSLRHPLQAIAFYLYMLRAEVLL------TTVHGQVWKNGFSSPVFVQTAMV 143
++ +YH P A F ++L+A L T +H + K G+ ++ +++
Sbjct: 94 SLLLYHRMLCCSAPHNAYTF-PFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLI 152
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD-I 197
++Y+ + F + + LFD + E +WN++I Y + E+ LF KMP +
Sbjct: 153 NSYAVTGNF----KHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNA 208
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
SWTTMI+ Y Q +EAL F++ + S D V++A+ LSAC+ LGAL+ G+ I Y
Sbjct: 209 ISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSY 268
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C + +L VF ++ K++ W ++ A HG EA
Sbjct: 269 ANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREA 328
Query: 296 LGMFDRMTYENVRPN 310
+ F M V+PN
Sbjct: 329 ISKFLEMQNMGVKPN 343
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ E+ +F M ++ WT +I+ Y+ + REA+ F + + G +
Sbjct: 284 LIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPN 343
Query: 232 QVTMATVLSACAHLGALDLGRGI 254
+T VL+AC++ G ++ G+ +
Sbjct: 344 AITFTAVLTACSYTGLVEEGKSV 366
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 82/329 (24%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFV 93
+ CS++++ + ++A + +L+ + + ISFC S + Y L+F Q+Q PN+F
Sbjct: 12 QSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFA 71
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAE----------------------VLLTTVHGQV 127
Y+ A+S P A+ ++ ML E +L +H V
Sbjct: 72 YNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWV 131
Query: 128 WKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
KNG SS VQTA+V Y+ ++R+ LFDE+P WN +++ Y R
Sbjct: 132 LKNGVASSDRHVQTALVRFYAECCAMGDARK----LFDEIPNLDVVQWNVLLNGYVR--- 184
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
R EAL+AF SG D+ + T L CA LG
Sbjct: 185 -----------RGLAP------------EALNAFRNMLVSGVEPDEFCLTTALKGCAQLG 221
Query: 247 ALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
AL G+ I Y C + RS+ VF + ++N+ W+++
Sbjct: 222 ALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMI 281
Query: 284 EALAIHGFAHEALGMFDRMTYEN-VRPNG 311
A+HG +A+ +RM E+ +RP+G
Sbjct: 282 GGFALHGHVRKAMQCLERMQVEDGLRPDG 310
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 45/245 (18%)
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
V A +RH A + YML +++++ + +A++ Y+
Sbjct: 16 VLPACGHIRHLRIGKAIHSYMLVSDMIIGA--------------HISSALISLYASCANM 61
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSY 207
++ +L++EMP + + M+ YAR +A +F+ MP D+ SW+ MI+ Y
Sbjct: 62 ----EMAEKLYNEMPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGY 117
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------- 257
+ Q EAL FN ++ G SD+VTM +V+SACA+LG+L+ + I +
Sbjct: 118 VDSNQPNEALSLFNGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVL 177
Query: 258 ------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C + +L VF ++ KN++ W S+ A A+HG +L +F++M E
Sbjct: 178 HICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDE 237
Query: 306 NVRPN 310
PN
Sbjct: 238 GAEPN 242
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ LA +FN+MP ++ +WT+MI++++ + + +L F + K G
Sbjct: 181 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAE 240
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
++VT ++L AC H+G + GR
Sbjct: 241 PNEVTFLSLLYACCHVGLVYEGR 263
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 33/223 (14%)
Query: 117 EVLLT-TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
EV LT VHGQ+ GF S V + ++++D Y ++R+ LFDEM R W
Sbjct: 207 EVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARK----LFDEMSARDVLAWT 262
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
TM+ YA+ ++ LF +MP + SWT +I+ Y++N +AL+ F K
Sbjct: 263 TMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRP 322
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
DQ T ++ L ACA + +L G+ I Y C SLG VF
Sbjct: 323 DQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVF 382
Query: 269 FKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ K +++ WN+I ALA HG EA+ M D M +P+
Sbjct: 383 DLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPD 425
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 63/247 (25%)
Query: 123 VHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH + G P F+ +++ Y+ K E+R+V FD+M R +WN M+ Y
Sbjct: 81 VHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKV----FDKMSARNLYSWNNMLSGY 136
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+L A LF+KMP D+ SW TM+ +++Q + EAL +++ ++ G + + A
Sbjct: 137 AKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196
Query: 237 TVLSACAHLGALDLGRGIQ----------------------IYCRSLG-----------R 263
VL+ C L + L R + + C +G R
Sbjct: 197 GVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR 256
Query: 264 SLL--------------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
+L +F ++ EKN + W ++ A +G H+AL +F +M
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMM 316
Query: 304 YENVRPN 310
+VRP+
Sbjct: 317 LFHVRPD 323
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 29/129 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + F V +A++D YS S + R++FD
Sbjct: 346 IHAYLLRINFQPNTIVVSALIDMYSKCG----SLGIGRKVFD------------------ 383
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+ NK+ D+ W T+I++ +Q+ EA+ + +SG D++T +L+AC
Sbjct: 384 ----LMGNKL---DVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNAC 436
Query: 243 AHLGALDLG 251
+H G + G
Sbjct: 437 SHSGLVQQG 445
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 23/127 (18%)
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG- 262
I + + EA+ + + G D T+A++L CA AL G+ + ++ + G
Sbjct: 31 IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90
Query: 263 ----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+ VF K+ +NL WN++ A G A +FD
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150
Query: 301 RMTYENV 307
+M ++V
Sbjct: 151 KMPEKDV 157
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 36/209 (17%)
Query: 121 TTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H +K+GF+ + V V TA++D Y+ K +R V FD+M R +WNTMID
Sbjct: 110 AALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLV----FDQMGVRNLVSWNTMID 165
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y + ++ LF+K+P ++ SWT +I + + + + EAL+ F + + +G D VT
Sbjct: 166 GYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVT 225
Query: 235 MATVLSACAHLGALDLG--------------------RGIQIY----CRSLGRSLLVFFK 270
+ ++SACA+LGAL LG I +Y C L R VF
Sbjct: 226 VIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQ--VFDG 283
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMF 299
+ ++NL+ WNSI A++G A +AL F
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFF 312
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 26/135 (19%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH--------LGAL-- 248
SWT+ I+ + +N F +A F + ++ + +T+ T+LSACAH GA
Sbjct: 54 SWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALH 113
Query: 249 -----------DLGRG---IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
D+ G I +Y C L + LVF ++ +NL+ WN++ + +G
Sbjct: 114 THAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDV 173
Query: 293 HEALGMFDRMTYENV 307
+AL +FD++ +NV
Sbjct: 174 DDALKLFDKLPVKNV 188
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
+ AM+D Y+ S ++RLFD+MPE+ +W TM+ YA++ E +F+ M
Sbjct: 236 LSNAMLDMYTKCG----SVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM 291
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLG 251
P DI +W +I++Y Q + +EAL+ F++ + S T D+VT+ + HL
Sbjct: 292 PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLKQGMKLNCHLTT---- 347
Query: 252 RGIQIYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
I +YC+ L ++L+VF + K++ W+++ LA+HG +A+ +F +M + V+P
Sbjct: 348 SLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKP 407
Query: 310 NG 311
N
Sbjct: 408 NA 409
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 138/304 (45%), Gaps = 44/304 (14%)
Query: 19 PTSVSFIRIHIIANQ-----LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SR 72
P S++ AN + +CS K+L+ ++A +++T D F A + I+ S
Sbjct: 22 PNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSP 81
Query: 73 FHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128
F +DY VF Q+ PN++ ++ A++S +P Q++ +L ML +
Sbjct: 82 FPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLH--------QSPDF 133
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+ F+ P ++ A ++ K F + L ++ N++I YA+ EL
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV-----FILNSLIHFYAKCGELG 188
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F +P D+ SW +MIT++ Q EAL+ F + + + +T++ +
Sbjct: 189 LGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNS----LTLSNAM---- 240
Query: 244 HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
LD+ C S+ + +F K+ EK+++ W ++ A G A G+FD M
Sbjct: 241 ----LDM----YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMP 292
Query: 304 YENV 307
+++
Sbjct: 293 NQDI 296
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y + +L +F+ + D+ W+ MI + + ++A+ F+K ++
Sbjct: 348 SLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKP 407
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT +L AC+H+G ++ GR
Sbjct: 408 NAVTFTNILCACSHVGLVEEGR 429
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 28/181 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD MP+ +WNT++ YA E+ +F +MPA ++ SW +I Y +N F
Sbjct: 75 ARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLF 134
Query: 214 REALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQIYCRSLG---------- 262
+EAL+ F + G + T+ VLSAC+ LG L++G+ + +Y S+G
Sbjct: 135 KEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNA 194
Query: 263 ------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++L VF L K+++ WN+I +LA+H A +AL +F+ M RP+
Sbjct: 195 LIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPD 254
Query: 311 G 311
G
Sbjct: 255 G 255
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +F+ + DI +W T+I S + + +AL F K++G
Sbjct: 193 NALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGER 252
Query: 230 SDQVTMATVLSACAHLG 246
D VT +LSAC H+G
Sbjct: 253 PDGVTFVGILSACTHMG 269
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 32/219 (14%)
Query: 121 TTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+++HG K G + V V TA++D YS + +R+V F + + +WNTM++
Sbjct: 114 SSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKV----FYNLGVKNSVSWNTMLN 169
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
+ R E+ LF++MP D SWT +I ++ +AL+ F++ ++SG +D V+
Sbjct: 170 GFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVS 229
Query: 235 MATVLSACAHLGALDLG--------------------RGIQIY--CRSLGRSLLVFFKLR 272
+ VL+ACA LGAL LG I +Y C + + VF K+
Sbjct: 230 IIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMA 289
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ L+ WNSI A++GFA E+L F M E +P+G
Sbjct: 290 KRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDG 328
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 25/139 (17%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG-- 246
FN I WT+ + Y +N Q EA F + + +G + +T T+LSACA
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 247 ---------------ALDLGRG------IQIY--CRSLGRSLLVFFKLREKNLLCWNSIT 283
LD G I +Y C LG + VF+ L KN + WN++
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 284 EALAIHGFAHEALGMFDRM 302
+G A+ +FD M
Sbjct: 169 NGFMRNGEIELAIQLFDEM 187
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y+R A +F KM + SW ++I ++ N E+L+ F +K G
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFK 325
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
D V+ L+AC+H G ++ +G++++
Sbjct: 326 PDGVSYTGALTACSHAGLVN--KGLELF 351
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 100/212 (47%), Gaps = 35/212 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K GF++ V+V T ++ ++Y+ F+ + LFDEMP+R TWNTMI Y+R +
Sbjct: 81 KLGFNTHVYVSTCLL--HAYAVMSFDQ---ACDLFDEMPQRNIVTWNTMITGYSRSGSIN 135
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSAC 242
LF MP D SW+ MIT Y N + L F + DQVT+ +VLS C
Sbjct: 136 KARSLFEAMPVRDAASWSAMITCYINNGFRDQGLSFFQEMMANENPKPDQVTVGSVLSGC 195
Query: 243 AHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNLLC 278
AH+G+L L G ++ C ++ VF ++E+N+
Sbjct: 196 AHMGSLGLLAGKSVHGFVVKNGWELNVDIGTLLVDMYAKCGFFKNAVWVFVLMQERNVST 255
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ A HGF E L +F M VRPN
Sbjct: 256 WTALICGAAQHGFCQEVLSLFKMMQEAGVRPN 287
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 147/346 (42%), Gaps = 78/346 (22%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
++ + +++C +K + ++A ++ + + + + F +F DY QM++
Sbjct: 11 VLLDSIQRCKKLKIFKKIHAQLITSGVVSNDLVVNRAAEFFAKGPNFADYACDFLSQMED 70
Query: 89 ---PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN 145
P +F + A L++ A ++ + VHG + K F ++V+ ++V
Sbjct: 71 GFLPYMFTFPAV------LKSCAKFMAVDEGR----QVHGVIAKMDFVCDIYVENSLVHF 120
Query: 146 YSYSNKFFESRRVSRRLFDEMPERKFATW------------------------------- 174
YS ++ RV FDEM R +W
Sbjct: 121 YSVCGSLDDASRV----FDEMLVRDAVSWTGVIYPGIKGYLILGKGIHGLIIERGFGLGL 176
Query: 175 ---NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
N ++D Y + L +F+++P DI SWT++I Q K +E L+ F + S
Sbjct: 177 EVSNALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSS 236
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
G D + + +VLSA A GALD GR ++ Y C + +
Sbjct: 237 GIEPDGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMA 296
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +F + KN+L WN++ LA+HG +AL +F+ M E +RPN
Sbjct: 297 MQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPN 342
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 161 RLFDEMPERKFATWN-----TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
RL E + K W+ ++D YA+ +A +FN MP ++ +W M+ + +
Sbjct: 262 RLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMH 321
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++AL F + + G ++VT L+AC H G + GR
Sbjct: 322 GHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGR 363
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 33/223 (14%)
Query: 117 EVLLT-TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
EV LT VHGQ+ GF S V + ++++D Y ++R+ LFDEM R W
Sbjct: 207 EVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARK----LFDEMSARDVLAWT 262
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
TM+ YA+ ++ LF +MP + SWT +I+ Y++N +AL+ F K
Sbjct: 263 TMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRP 322
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
DQ T ++ L ACA + +L G+ I Y C SLG VF
Sbjct: 323 DQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVF 382
Query: 269 FKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ K +++ WN+I ALA HG EA+ M D M +P+
Sbjct: 383 DLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPD 425
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 63/247 (25%)
Query: 123 VHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH + G P F+ +++ Y+ K E+R+V FD+M R +WN M+ Y
Sbjct: 81 VHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKV----FDKMSARNLYSWNNMLSGY 136
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+L A LF+KMP D+ SW TM+ +++Q + EAL +++ ++ G + + A
Sbjct: 137 AKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196
Query: 237 TVLSACAHLGALDLGRGIQ----------------------IYCRSLG-----------R 263
VL+ C L + L R + + C +G R
Sbjct: 197 GVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR 256
Query: 264 SLL--------------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
+L +F ++ EKN + W ++ A +G H+AL +F +M
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMM 316
Query: 304 YENVRPN 310
+VRP+
Sbjct: 317 LFHVRPD 323
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 29/129 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + F V +A++D YS S + R++FD
Sbjct: 346 IHAYLLRINFQPNTIVVSALIDMYSKCG----SLGIGRKVFD------------------ 383
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+ NK+ D+ W T+I++ +Q+ EA+ + +SG D++T +L+AC
Sbjct: 384 ----LMGNKL---DVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNAC 436
Query: 243 AHLGALDLG 251
+H G + G
Sbjct: 437 SHSGLVQQG 445
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 23/127 (18%)
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG- 262
I + + EA+ + + G D T+A++L CA AL G+ + ++ + G
Sbjct: 31 IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90
Query: 263 ----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+ VF K+ +NL WN++ A G A +FD
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150
Query: 301 RMTYENV 307
+M ++V
Sbjct: 151 KMPEKDV 157
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 154/358 (43%), Gaps = 88/358 (24%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF 97
+S +L ++ + + N + QFIS C+S + +DY I +F + + N ++++A
Sbjct: 53 NSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSS-LNSVDYAISIFQRFELKNSYLFNAL 111
Query: 98 SSLRHPLQ------AIAFYLYMLRAEV---------------------LLTTVHGQVWKN 130
+R + +I+F++ ML+ ++ + +H + K
Sbjct: 112 --IRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKF 169
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRV-------------------------------S 159
G FV+ ++VD Y + + +V +
Sbjct: 170 GLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKA 229
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFR 214
LFD MP++ +WN++I+ + ++ ++ LF KMP ++ SWTTM+ +SQN
Sbjct: 230 TELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPE 289
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
+AL+ F + G + T+ + LSACA +GALD G I Y
Sbjct: 290 KALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALV 349
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ + VF + +EK LL W+ + AIHG +AL F+ M + +P+
Sbjct: 350 DMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPD 407
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ AE +F++ + W+ MI ++ + FR+AL F K +GT
Sbjct: 347 ALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKP 406
Query: 231 DQVTMATVLSACAHLGALDLG 251
D V VL+AC+H G ++ G
Sbjct: 407 DSVVFLAVLNACSHSGQVNEG 427
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 153/366 (41%), Gaps = 103/366 (28%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA 96
C L V+A I++ L +A Q +S C+S DY++ +F +E N FV +A
Sbjct: 39 CKDTASLRHVHAQILRRGV-LSSRVAAQLVS-CSSLLKSPDYSLSIFRNSEERNPFVLNA 96
Query: 97 F-----------SSLRHPLQAIAFYLYMLRAEV---------------------LLTTVH 124
SS+RH ++ MLR V L +H
Sbjct: 97 LIRGLTENARFESSVRH-------FILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALH 149
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNK-------FFES-RRVSRR--------------- 161
KN FV+ ++VD Y+ + + F ES R+ +
Sbjct: 150 AATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRA 209
Query: 162 --------LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
LF MPER +W+T+I Y EL LF MP ++ SWTT+I +S
Sbjct: 210 KDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFS 269
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC---------- 258
Q + A+ + + + G ++ T+A VLSAC+ GA LG GI+I+
Sbjct: 270 QTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGA--LGSGIRIHGYILDNGIKLD 327
Query: 259 RSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
R++G +L+ VF + K++L W ++ + A+HG H+A+ F +M Y
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 305 ENVRPN 310
+P+
Sbjct: 388 SGEKPD 393
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 82 VFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
+F M E NV + + FS AI+ Y ML + G +
Sbjct: 249 LFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML--------------EKGLKPNEY 294
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
A++ S S R+ + D + A ++D YA+ EL +F+ M
Sbjct: 295 TIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM 354
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
DI SWT MI ++ + +F +A+ F + SG D+V VL+AC + +DLG
Sbjct: 355 NHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLG 413
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 31/237 (13%)
Query: 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160
R + + L L VH Q+ + GF + F + +VD Y+ ++RRV
Sbjct: 145 RITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRV-- 202
Query: 161 RLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
FDEM + NTMI R A LF + D +WTTM+T +QN E
Sbjct: 203 --FDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESE 260
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------ 257
ALD F + + G G DQ T ++L+AC L AL+ G+ I Y
Sbjct: 261 ALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVD 320
Query: 258 ----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
CRS+ + VF ++ KN++ W ++ +G EA+ +F M + ++P+
Sbjct: 321 MYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPD 377
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 48/278 (17%)
Query: 82 VFPQMQEPNVFVYHAFSS--LRHPLQAIAFYLYML---RAEVLLTTVHGQVWKNGFSSPV 136
VF +M+ NV + + + LR + A A L+ R + TT+ + +NG S
Sbjct: 202 VFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEA 261
Query: 137 F-------VQTAMVDNYSYSN---------KFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+ +D Y++ + E +++ + E + ++D
Sbjct: 262 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDM 321
Query: 181 YA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ RLAE +F +M +I SWT MI Y QN EA+ F++ ++ G D T+
Sbjct: 322 YSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTL 381
Query: 236 ATVLSACAHLGALDLG---------RGIQIY-------------CRSLGRSLLVFFKLRE 273
+V+S+CA+L +L+ G G++ Y C S+ + +F ++
Sbjct: 382 GSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF 441
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + W ++ A G A E + +F++M + V+P+G
Sbjct: 442 HDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDG 479
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT ++ Y+Q + +E +D F K G
Sbjct: 417 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVK 476
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VT VLSAC+ G +D GR
Sbjct: 477 PDGVTFIGVLSACSRSGLVDKGR 499
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 69/253 (27%)
Query: 118 VLLTTVHGQVWKN-GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+L VH + + SP ++ ++ Y+ S +RRV FD MP R T N+
Sbjct: 27 ILTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRV----FDAMPGRNLVTGNS 82
Query: 177 MIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTG 229
++ A AR E LF +P D S+ ++ +S+ A A+ ++G
Sbjct: 83 LLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVR 142
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSL------------------------GRSL 265
++TM+ V+ + LG LGR Q++C+ L G +
Sbjct: 143 PSRITMSGVVMVASALGDRALGR--QVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDAR 200
Query: 266 LVFFKLREKNL-------------------------------LCWNSITEALAIHGFAHE 294
VF ++ KN+ + W ++ L +G E
Sbjct: 201 RVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESE 260
Query: 295 ALGMFDRMTYENV 307
AL +F RM E V
Sbjct: 261 ALDVFRRMRAEGV 273
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 57/323 (17%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY----H 95
+KE E V+A++V+T F++ + F + + VF +M++P + ++
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVA-CGLVGKGRQVFDEMRQPGLVLWTLIIR 165
Query: 96 AFSSLRHPLQAIAFYLYMLRAE-----VLLTTV----------------HGQVWKNGFSS 134
A+ + P +A+ + M V ++TV H + K+G
Sbjct: 166 AYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEV 225
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLF 189
FV + ++ Y S + R F E P + WNTMI L + LF
Sbjct: 226 DAFVSSTLISTYGECG----SLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
MP D+ SW +MI +++ Q++EAL F++ + SG + +T+ + LSACA GALD
Sbjct: 282 QSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALD 341
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
G I Y C + +++ +F + ++L W SI LA
Sbjct: 342 TGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLA 401
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+HG +AL F +M V+P+
Sbjct: 402 MHGRGEKALHYFSKMKEAQVQPD 424
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+++ID Y++ ++ +F + D+ +WT+++ + + + +AL F+K K++
Sbjct: 363 SSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQ 422
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VTM VLSACAH G LD G
Sbjct: 423 PDDVTMVGVLSACAHAGLLDQG 444
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 116/389 (29%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+K C +I L +A I+ D F+ F+S TS + Y+ +F ++ P+ F+
Sbjct: 16 IKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSISTS----VSYSTSIFNRLLNPSTFL 71
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHGQV 127
Y+ FS + + + M ++E L+ VHG
Sbjct: 72 YNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSA 131
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SR 160
+ G S V+V ++++ Y + +R+V ++
Sbjct: 132 IRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAK 191
Query: 161 RLFDEMPERKFATWN-------------------------------TMIDAYARLAEL-- 187
R+F+ MPER +WN MID YA++ ++
Sbjct: 192 RVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMAS 251
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
LF++ P D+ +W+ +I+ YS+N+Q EA+ F + D+ M +++SAC+
Sbjct: 252 ARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQ 311
Query: 245 LGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LG DL + + Y C ++ +++ +F + ++L+ S
Sbjct: 312 LGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCS 371
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + L+IHG EA+ +F+RM E + P+
Sbjct: 372 LIQGLSIHGRGVEAVELFNRMLDEGLIPD 400
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 143/333 (42%), Gaps = 62/333 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L C+++ L+ ++ + D L +FI + ++ Y VF P++F
Sbjct: 37 LCHCTNLSHLQQTQGFMLTRGLDQDDILLARFI-YTSASLGLSSYAYSVFISNHRPSIFF 95
Query: 94 YH----AFSSLRHPLQAIAFY---------------LYMLRAEVLLTTVH------GQVW 128
Y+ A SS +P +AI+ + ++L+A V L+ VH Q
Sbjct: 96 YNNVIWALSS-SNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAI 154
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+G S V T++V YS +R+ LFD + WN M+ YA++ +
Sbjct: 155 VSGLDSHPSVVTSLVQMYSSCAHLSSARK----LFDGATFKHAPLWNAMLAGYAKVGNMS 210
Query: 188 ----LFNKMPA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
LF MP D+ SWTT+I+ Y+Q EA+ F D++ + VLSA
Sbjct: 211 NARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSA 270
Query: 242 CAHLGALDLGRGIQIY--------------CRSL----------GRSLLVFFKLREKNLL 277
CA LGAL LG I Y C SL ++ +F ++ K ++
Sbjct: 271 CADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTII 330
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ LA+HGF EAL +F M V+PN
Sbjct: 331 TWTTVISGLALHGFGKEALDVFSCMEKARVKPN 363
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID YA+ ++ LF M I +WTT+I+ + + +EALD F+ +K+
Sbjct: 302 NSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVK 361
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRS 260
++VT+ VLSAC+H+G ++LGR I RS
Sbjct: 362 PNEVTLIAVLSACSHVGLVELGRNIFTSMRS 392
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 39/227 (17%)
Query: 119 LLTTVHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
L VH Q + G + V ++V Y+ ++RRLFDE+P +WN +
Sbjct: 80 LARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPG----LARRLFDEIPRPNHVSWNAL 135
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN-----KTKKSG 227
+D YA+ +L +F +MP D+ SW+ MI + + REAL F + G
Sbjct: 136 LDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDG 195
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265
++ VTM +VL ACAHLG L GR + Y C ++ +L
Sbjct: 196 VRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEAL 255
Query: 266 LVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ LA+HG + E+L MF +M + V P+
Sbjct: 256 EVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPD 302
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 175 NTMIDAYARLAELL-----FNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+++D YA+ ++ F+ +P + D+ W +I + + RE+L F K + +G
Sbjct: 239 TSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 298
Query: 228 TGSDQVTMATVLSACAHLGALD 249
D++T +LSAC H G +D
Sbjct: 299 VVPDEITYLCLLSACVHGGLVD 320
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 140/325 (43%), Gaps = 61/325 (18%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVY----H 95
+KE E V+A++V+T F++ + F + + VF +M++P + ++
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVA-CGLVGKGRQVFDEMRQPGLVLWTLIIR 165
Query: 96 AFSSLRHPLQAIAFYLYMLRAEVLLT-----------------------TVHGQVWKNGF 132
A+ + P +A+ + M EV LT +H + K+G
Sbjct: 166 AYVCVTFPEKALELFRTM--REVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGI 223
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAEL 187
FV + ++ Y S + R F E P + WNTMI L +
Sbjct: 224 EVDAFVSSTLISTYGECG----SLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQ 279
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF MP D+ SW +MI +++ Q++EAL F++ + SG + +T+ + LSACA GA
Sbjct: 280 LFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGA 339
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
LD G I Y C + +++ +F + ++L W SI
Sbjct: 340 LDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCG 399
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
LA+HG +AL F +M V+P+
Sbjct: 400 LAMHGRGEKALHYFSKMKEAQVQPD 424
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+++ID Y++ ++ +F + D+ +WT+++ + + + +AL F+K K++
Sbjct: 363 SSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQ 422
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VTM VLSACAH G LD G
Sbjct: 423 PDDVTMVGVLSACAHAGLLDQG 444
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 148/347 (42%), Gaps = 107/347 (30%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPN 90
+ L KC+++ +++ ++A I+K+N ++D F+ + IS F R + F Q+Q PN
Sbjct: 51 SDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATN--AFNQVQYPN 108
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAE---------------------VLLTTVHG 125
V +Y+ A S P QA A + M R ++ +VH
Sbjct: 109 VHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHA 168
Query: 126 QVWKNGFSSPVFVQTAMVDNYS--------YSNKFFES---RR----------------- 157
Q+ K GF S VFV +++D+YS + K F S RR
Sbjct: 169 QIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGL 228
Query: 158 --VSRRLFDEMPERKFATWNTMIDAYAR-------------------------------- 183
+R++FDEMPE+ +WNTM+D Y +
Sbjct: 229 YEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKA 288
Query: 184 ----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+A +LF+KMP ++ SWT +++ +++ REA+ F++ +K+ D T+ ++L
Sbjct: 289 GDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSIL 348
Query: 240 SACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+ACA G L LG I ++ N C I+ AL
Sbjct: 349 AACAESGLLGLGEKIHA-------------SIKNNNFKCTTEISNAL 382
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+LFDEMPER +W MI Y+ L LF+ MP ++ SW MI+ Y QNKQ
Sbjct: 378 ARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQP 437
Query: 214 REALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCR--------SLGRS 264
EAL F++ + + + D+VT+ +VL A A LGALDLG + + R ++G +
Sbjct: 438 YEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTA 497
Query: 265 LL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ VF + EK WN++ A AI+G A EALG+F M ++ PN
Sbjct: 498 LIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPN 557
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRA------EVLLTTVHG 125
+D +F M E N+F ++A + + P +A+ + M EV + +V
Sbjct: 406 LDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSV-- 463
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
P +D + ++F V R+ D R +ID YA+
Sbjct: 464 --------LPAIADLGALDLGGWVHRF-----VRRKKLD----RATNVGTALIDMYAKCG 506
Query: 186 ELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
E++ F+ MP + SW +I +++ N + +EAL F + G +++TM VLS
Sbjct: 507 EIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLS 566
Query: 241 ACAHLGALDLGR 252
AC H G ++ G+
Sbjct: 567 ACNHSGLVEEGK 578
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 129/301 (42%), Gaps = 59/301 (19%)
Query: 64 QFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYM------ 113
F+S CTS H I Y +F PN+ +++ A SS Q+ F+ M
Sbjct: 46 HFVSVCTS-LHQIPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNI 104
Query: 114 ----------------LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
LR L +H V GF V+ +++ YS K ++ +
Sbjct: 105 LPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANK 164
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
V FDEM R+ WN MI+ + ++ +L LF +M + SW MI+ +Q K+
Sbjct: 165 V----FDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKK 220
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR---------SLGR 263
EA F + + G D T+ TVL CA LG +D G I Y S+G
Sbjct: 221 DGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGN 280
Query: 264 SLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
SL+ VF ++ +KN++ WN++ L ++G + +F++M + V P
Sbjct: 281 SLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTP 340
Query: 310 N 310
+
Sbjct: 341 S 341
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LF 189
PV + VD + + + + + + R++ + N+++D Y + L +F
Sbjct: 248 PVCARLGDVDAGEWIHSYADGKGLLRKVI--------SVGNSLVDFYCKCGNLEAAWKVF 299
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
N+M ++ SW MI+ N + ++ F K + G T VL+ CAH G +D
Sbjct: 300 NEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVD 359
Query: 250 LGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
GR +I+ S+ V FKL K L + + + L G EA + M
Sbjct: 360 KGR--EIF-----DSMTVKFKLSPK-LEHYGCVVDLLGRCGHVKEAYDLIRNM 404
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 155/374 (41%), Gaps = 96/374 (25%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNV 91
+L + S IKELE A IVK + + I+F + S + + +F + +
Sbjct: 5 KLHRLSCIKELEQAQAFIVKAGFYNHIPIITKLIAFSSLSPLGSLPHACALFQETSMDDS 64
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEV----------------------------- 118
F+ + A+S+ PL+A+ Y M R +V
Sbjct: 65 FICNTMIRAYSNTVFPLKALLIYNRMQRMDVDSDHFTYNFVLRACARAIKCTEMDDQCFG 124
Query: 119 ------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------- 158
+ +H ++ K GF VQ +++ YS S +R +
Sbjct: 125 HHIISRKGSEIHARILKLGFDQDHHVQNSLLLVYSGSGLVGFARLIFNEMTVKTAVSWNI 184
Query: 159 -------------SRRLFDEMPERKFATWNTMIDAYARLAELL-----FNKMPAWDIRSW 200
+ L + MP+ +WNT++ Y RL L+ F +MP D+ SW
Sbjct: 185 MMSAYNRVHDYKSADVLLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSW 244
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----- 255
++I+ Y K ++ ALD F+ K+ + +VT ++L ACA LGAL++G+ I
Sbjct: 245 NSIISGYVNVKDYKGALDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKE 304
Query: 256 ---------------IY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
+Y C LG +L VF ++ K + CWN++ LA+HG AL M
Sbjct: 305 KHYRIEGYLGNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEM 364
Query: 299 FDRMTYENV--RPN 310
FD M E+ +PN
Sbjct: 365 FDSMKAEDGDHKPN 378
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 157 RVSRRLFDEMPERKFAT----WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
+ +++ D + E+ + N ++D YA+ EL +FN+M + W MI
Sbjct: 293 EIGKKIHDSLKEKHYRIEGYLGNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGL 352
Query: 208 SQNKQFREALDAFN--KTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + AL+ F+ K + +++T +L AC+H G L GR
Sbjct: 353 AVHGHCERALEMFDSMKAEDGDHKPNRITFIALLIACSHKGLLAEGR 399
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA-----EVLLTTVHGQVWKNG- 131
VF ++ + ++ ++ +S +RH +A+ + M+ A E+ L +V G + G
Sbjct: 184 VFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGD 243
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
+V+ +V+N N F S +I Y + +L
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGS--------------------ALIHMYGKCGDLVSAR 283
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F+ M D +W MIT Y+QN EA+ F + S T DQ+T+ +LSACA +G
Sbjct: 284 RIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIG 343
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
ALDLG+ ++IY C SL + VF+ + +KN + WN++
Sbjct: 344 ALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMIS 403
Query: 285 ALAIHGFAHEALGMFDRMTYEN--VRPN 310
ALA HG A EAL +F M E V PN
Sbjct: 404 ALAFHGQAQEALALFKSMMNEGGTVSPN 431
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
V RR DE +++I YAR ++ +F+++ D+ SW +MI+ YS+ +
Sbjct: 153 VIRRGLDE----DGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRH 208
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EA+ F + ++G +++++ +VL AC LG L LG ++ +
Sbjct: 209 AGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA 268
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + +F +++K+ + WN++ A +G + EA+ +F M + P+
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPD 328
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG--T 228
++D YA+ L +F MP + SW MI++ + + Q +EAL F G
Sbjct: 369 ALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTV 428
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
+ +T VLSAC H G +D GR
Sbjct: 429 SPNDITFVGVLSACVHAGLVDEGR 452
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 58/300 (19%)
Query: 64 QFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF---SSLRHPLQA-IAFYLYM------ 113
F+S C S + Y +F PN+ +++A SL P A +F+ M
Sbjct: 45 HFVSVCAS-LRRVPYATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAIS 103
Query: 114 ---------------LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV 158
LR VL VH V + GF+ V+ A ++ Y+ + ++ +V
Sbjct: 104 PDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKV 163
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
FDEM + WN MI + ++ +L +F +M + SW M++ ++N +
Sbjct: 164 ----FDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKE 219
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS---------LGRS 264
+AL+ FN+ + G D ++ TVL CA LGA+D+G I Y S +G S
Sbjct: 220 EKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNS 279
Query: 265 LLVFF--------------KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ F+ + KN++ WN++ LA +G + +F+ M + PN
Sbjct: 280 LVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPN 339
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+++D Y + L +FN M + ++ SW MI+ + N + ++ F + G
Sbjct: 278 NSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFE 337
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ T VL+ CAH+G +D G R L S+ V FK+ K L + + + L
Sbjct: 338 PNDSTFVGVLACCAHVGLVDRG-------RDLFASMSVKFKVSPK-LEHYGCVVDLLGRC 389
Query: 290 GFAHEALGMFDRM 302
G EA + M
Sbjct: 390 GHVREARDLITSM 402
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 59/344 (17%)
Query: 22 VSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTI 80
+S I H + L ++ KE+ ++A + D L QF+ + S ++DY
Sbjct: 9 MSRIVKHPAISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYAN 68
Query: 81 LVFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLY-------------------MLRAEVL 119
+ + +P +F ++ + + P+ +F Y +++A
Sbjct: 69 QILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTG 128
Query: 120 LT------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L VHG + GF + VQT ++ Y+ +V F+ + F
Sbjct: 129 LGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKV----FNSVSYPDFVC 184
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
M+ A AR ++ LF MP D +W MI+ Y+Q + REAL+ F+ + G
Sbjct: 185 RTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGV 244
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
+ V+M +VLSAC LGALD GR Y C + +++
Sbjct: 245 KVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAME 304
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF+ + EKN+ W+S LA++GF + L +F M + V PN
Sbjct: 305 VFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPN 348
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +++ Y + +L LF + ++ SW TMI + QN E L FN ++ G
Sbjct: 676 NALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLK 735
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQ---IYCR----------------SLGR---SLLV 267
DQ T VL C +G + L +GI ++C LGR S V
Sbjct: 736 PDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTV 795
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ + + W ++ A A HG+ +A+ F+ M + + P+
Sbjct: 796 FLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPD 838
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+L L +F ++ + D +WT M+ +Y+ + R+A+ F G
Sbjct: 778 ALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSP 837
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D VT +L+AC+H G ++ GR Y ++ + + E L ++ + + + G
Sbjct: 838 DHVTFTHLLNACSHSGLVEEGR---YYFETMSKRYRI-----EPRLDHYSCMVDLMGRSG 889
Query: 291 FAHEALGMFDRMTYE 305
+A G+ M E
Sbjct: 890 LLQDAYGLIKEMPME 904
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRR---------------------------VSRRLFDEMPE 168
VF TAMV Y + E+R+ ++ LF+ MP
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322
Query: 169 RKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R ++WNTMI Y + A LF+ MP D SW +I+ Y+QN + EAL+ F +
Sbjct: 323 RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGR----------------------GIQIYCRSL 261
K+ G S++ T + LS CA + AL+LG+ G+ C S
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGST 442
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF + EK+++ WN++ A HGF +AL +F+ M V+P+
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPD 491
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
AM+ Y + KF ++R LFD+MPER +WN M+ Y R A LF+ MP
Sbjct: 81 NAMISGYLRNAKF----SLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK 136
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ SW M++ Y+QN EA + FNK + ++ +L+A H G L R
Sbjct: 137 KDVVSWNAMLSGYAQNGFVDEAREVFNKMPH----RNSISWNGLLAAYVHNGRLKEAR-- 190
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+F L+ WN + +A +FDRM +V
Sbjct: 191 -----------RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDV 232
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+F+ MP R ++N MI Y R LA LF+KMP D+ SW M+T Y +N++ E
Sbjct: 67 RVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGE 126
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A F+ K D V+ +LS A G +D R VF K+ +N
Sbjct: 127 AHKLFDLMPK----KDVVSWNAMLSGYAQNGFVDEAR-------------EVFNKMPHRN 169
Query: 276 LLCWNSITEALAIHGFAHEALGMFD 300
+ WN + A +G EA +F+
Sbjct: 170 SISWNGLLAAYVHNGRLKEARRLFE 194
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+LFD MP R +WNTMI YA++ +L LFN+ P D+ +WT M++ Y QN
Sbjct: 220 ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMV 279
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS------------- 260
EA F++ S +A + + A +L + CR+
Sbjct: 280 DEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMP--CRNISSWNTMITGYGQ 337
Query: 261 ---LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++ +F + +++ + W +I A +G EAL MF M + N
Sbjct: 338 NGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSN 390
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 30/133 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L VHGQV K GF + FV A++ Y E+ V F+ + E+
Sbjct: 409 LGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDV----FEGIEEK--------- 455
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
D+ SW TMI Y+++ R+AL F KK+G D++TM V
Sbjct: 456 -----------------DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGV 498
Query: 239 LSACAHLGALDLG 251
LSAC+H G +D G
Sbjct: 499 LSACSHSGLIDRG 511
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
DI +W I+S+ +N AL FN + + S ++ L A DL +
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104
Query: 256 --------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
+ R LG + +F + +K+++ WN++ A +GF EA +F++
Sbjct: 105 ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNK 164
Query: 302 MTYEN 306
M + N
Sbjct: 165 MPHRN 169
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 68 FCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIA----FYLYMLRAEVLL--- 120
+C + PQ P F A +H Q +A + ++L+A L
Sbjct: 156 YCPPGVRPKSRVVARLPQGLLPRSFPLEALHLFKHARQHLADDTFVFKFVLKACAGLGWH 215
Query: 121 ---TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+H V + GF +V A+++ Y S E+R+V FDEMP + +WN M
Sbjct: 216 RAGAQLHALVVQKGFEFHAYVHIALINVYVMSRCLVEARKV----FDEMPVKNVVSWNVM 271
Query: 178 IDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I +A A LLF++MP ++ SWT +I Y+ + EAL G +
Sbjct: 272 ITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLLRHMMAGGISPSE 331
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFK 270
+ + V+ A ++LG + +G + YC G SL VF +
Sbjct: 332 IIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLIDLYAKIGSVQNSLKVFDE 391
Query: 271 -LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L +NL+ W SI A+HG + EAL +F M ++PN
Sbjct: 392 MLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 432
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKM-PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N++ID YA++ + +F++M ++ SWT++I+ ++ + EAL+ F + +++G
Sbjct: 370 NSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGI 429
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+++T +V++ C+H G + G
Sbjct: 430 KPNRITFLSVINVCSHGGLVQQG 452
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 39/227 (17%)
Query: 119 LLTTVHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
L VH Q + G + V ++V Y+ ++RRLFDE+P +WN +
Sbjct: 80 LARAVHAQPLRRGLLPHDLHVSNSLVHMYAAC----ALPGLARRLFDEIPRPNHVSWNAL 135
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN-----KTKKSG 227
+D YA+ +L +F +MP D+ SW+ MI + + REAL F + G
Sbjct: 136 LDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDG 195
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265
++ VTM +VL ACAHLG L GR + Y C ++ +L
Sbjct: 196 VRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEAL 255
Query: 266 LVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ LA+HG + E+L MF +M + V P+
Sbjct: 256 EVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPD 302
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 175 NTMIDAYARLAELL-----FNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+++D YA+ ++ F +P D+ W +I + + RE+L F K + +G
Sbjct: 239 TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 298
Query: 228 TGSDQVTMATVLSACAHLGALD 249
D++T ++LSAC H G +D
Sbjct: 299 VVPDEITYLSLLSACVHGGLVD 320
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 132/307 (42%), Gaps = 49/307 (15%)
Query: 34 LKKCSS---IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
+K C+ ++E + ++ +K D F+ ++ S+ ID VF M + +
Sbjct: 119 IKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNM-YSKCGEIDCARKVFDGMIDKD 177
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V ++++ I Y ++ L Q+++ F T +VD S
Sbjct: 178 VVLWNSL---------IDGYARCGEIDIAL-----QLFEEMPERDAFSWTVLVDGLSKCG 223
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
K +R+LFD+MP R +WN MI+ Y + + LF +MP WD+ +W MI
Sbjct: 224 KV----ESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIA 279
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------- 257
Y N QF +A+ F K G+ T+ +VLSA + L L GR I Y
Sbjct: 280 GYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFEL 339
Query: 258 --------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
C + +L VF +++K + W +I L IHG A+ AL +F M
Sbjct: 340 DGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMC 399
Query: 304 YENVRPN 310
++PN
Sbjct: 400 KTGLKPN 406
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR----------LAELLFNKMPAWDI 197
YS+ +R +FD + R WNT+I Y EL+ +P D
Sbjct: 55 YSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLP--DN 112
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
+ +I ++ +E K G GSD ++++ + G +D R
Sbjct: 113 FTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARK---- 168
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
VF + +K+++ WNS+ + A G AL +F+ M
Sbjct: 169 ---------VFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS +F ++R V FD M ++ TW
Sbjct: 88 SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLV----FDYMEDKNSVTW 143
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F+KMP D+ SWT MI + + EAL F + + SG
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLV 267
D V + L+AC +LGAL G I +YCR + + V
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F+ + ++ ++ WNS+ A +G AHE+L F +M + +P+
Sbjct: 264 FYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPD 306
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F M + SW ++I ++ N E+L F K ++ G
Sbjct: 245 NSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFK 304
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 305 PDAVTFTGALTACSHVGLVEEG 326
>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
Length = 523
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 27/179 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ F+++PE+ W+ MI Y R+ ++ +F ++ A D+ W T+IT Y+QN
Sbjct: 196 ARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVFARDLVIWNTLITGYAQNGYS 255
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQI-------- 256
+A+DAF + G D VT+++VLSACA G LD+GR GI++
Sbjct: 256 GDAIDAFYNMQGEGYEPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIELNQFVSNAL 315
Query: 257 -----YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + VF L ++L CWNS+ LAIHG +EAL MF M +++P+
Sbjct: 316 IDMYAKCGDLENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFRTMGSLDLKPD 374
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 32/218 (14%)
Query: 118 VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VL +H + K G S V V ++++ Y +R+V FDEMPER ATWN M
Sbjct: 63 VLGKLLHSESIKFGVCSDVMVGSSLISMYGKWGCVVSARKV----FDEMPERNVATWNAM 118
Query: 178 IDAY-----ARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKT--KKSGTG 229
I Y A A LF ++ + +W M+ Y + K+ +A + F + +
Sbjct: 119 IGGYMGNGDAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIEKARELFERMPFELKNVK 178
Query: 230 SDQVTMATVLSACAHLGALDLGR---------------GIQIYCR--SLGRSLLVFFKLR 272
+ V + +S H D + I Y R + + VF+++
Sbjct: 179 AWSVMLGVYVS---HRKMEDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVF 235
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++L+ WN++ A +G++ +A+ F M E P+
Sbjct: 236 ARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPD 273
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ +L +F + + W +MI+ + + + EAL+ F
Sbjct: 313 NALIDMYAKCGDLENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFRTMGSLDLK 372
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
D++T VL+AC H G L G++I+
Sbjct: 373 PDEITFLAVLTACVHGGFLM--EGLKIF 398
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++H V + + V + A++D Y +R + FD M + +W +M+
Sbjct: 377 LGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREI----FDSMGTKDVFSWTSMV 432
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ YA+ EL F+ MP ++ SW MI YSQN Q ++A+ F+ G +
Sbjct: 433 NGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLFHHMVGEGLIPIEN 492
Query: 234 TMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFK 270
T+ VLSAC LG LDLGR I +Y C + + VF
Sbjct: 493 TLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIANALIDMYAKCGVIDAAARVFNG 552
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++L+ WNS+ A A HG A +AL MF +M +E +P+
Sbjct: 553 MPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPD 592
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 142/345 (41%), Gaps = 78/345 (22%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
+S K + ++ + I H + ++ C+ + +L+ + A ++ T F + ++FC
Sbjct: 142 SSTKTTRWNSTTNVIVTHPVLLIMESCTCMIQLKQIQAHMIITGLITHTFPVSRVLAFCA 201
Query: 71 -SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT--- 122
+ I + L+F Q++ PN ++++ FS+ + P+ ++F+ M+R V + T
Sbjct: 202 LADTGDIRHAHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSF 261
Query: 123 ------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
+H +WK GF + VQ ++ YS ++R++FD
Sbjct: 262 VFALKASEQFLTALEGESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLV----LARKVFD 317
Query: 165 EMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
E P R +W +MID YS + + +AL F+
Sbjct: 318 ETPARDVVSWTSMIDG--------------------------YSTHDYYTDALKLFDSML 351
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----SLGRSLL-------------- 266
S ++VTM +VLSAC+ G L LG+ I Y R +L +L+
Sbjct: 352 LSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLV 411
Query: 267 ----VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+F + K++ W S+ A G A FD M NV
Sbjct: 412 AAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNV 456
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ A +FN MP D+ SW +MI + + + ++AL F + G
Sbjct: 531 NALIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFK 590
Query: 230 SDQVT 234
D +T
Sbjct: 591 PDDIT 595
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 81/329 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK C +I EL+ ++A IVK + + FL + + C + + +Y L+F + +PN F+
Sbjct: 66 LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVC-NHYGETEYANLLFKGVADPNAFL 124
Query: 94 YHAF-SSLRHP---LQAIAFYLYMLRAE--------------------------VLLTTV 123
Y+A + +H + AI Y ML L V
Sbjct: 125 YNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 184
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V+K G S V+ ++V+ Y + ++ RV F+EM ER DA
Sbjct: 185 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRV----FEEMTER---------DA--- 228
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
I SWT +++ Y++ + +AL+ F + + G D++++ +VL CA
Sbjct: 229 ------------TIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCA 276
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LGAL+LG+ I IY C S+ + +F +++E++++ W++
Sbjct: 277 QLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWST 336
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA HG A EA+ +F M + P+
Sbjct: 337 MIVGLANHGRAREAIELFQEMQKAKIEPS 365
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R N +I+ YA+ + LF++M D+ SW+TMI + + + REA++ F +
Sbjct: 298 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 357
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
+K+ +T +L+ACAH G L+ G Y S+ R + E + + +
Sbjct: 358 QKAKIEPSIITFVGLLTACAHAGLLNEGLR---YFESMKRDYNI-----EPGVEHYGCLV 409
Query: 284 EALAIHGFAHEALGMFDRMTYENVRP 309
L + G +AL + +M + P
Sbjct: 410 NLLGLSGRLDQALELVKKMPRKPDSP 435
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 161/376 (42%), Gaps = 91/376 (24%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
PT FI + + +I +L ++A I+ N + + Q IS + R I++
Sbjct: 79 PTEAHFISL------IHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLR-KSINH 131
Query: 79 TILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEV---------------- 118
++ VF + N+F ++A ++ H AI + MLR+ +
Sbjct: 132 SLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAG 191
Query: 119 -----LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------- 158
L +H + + G FV+ ++VD Y K + +V
Sbjct: 192 LFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSAL 251
Query: 159 -----------------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
+ +LF MP+++ +W+T+ID +A+ ++ LF++MP +
Sbjct: 252 LWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKN 311
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SWTTM+ +S+N +AL F+K + G + T+ + LSACA +G L+ G I
Sbjct: 312 VVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHK 371
Query: 257 YCR--------SLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHE 294
Y + +LG +L+ VF + +K++ W + AIHG + +
Sbjct: 372 YIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQ 431
Query: 295 ALGMFDRMTYENVRPN 310
A+ F +M + ++P+
Sbjct: 432 AIACFKQMMFAGIKPD 447
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 23/185 (12%)
Query: 76 IDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131
+D + +F QM E NV + FS +A++ + ML + G
Sbjct: 297 MDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKML--------------EEG 342
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
F + + + R+ + + D A ++D YA+ +
Sbjct: 343 VRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESAS 402
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F + IR+WT MI ++ + +A+ F + +G D+V +L+AC H G
Sbjct: 403 EVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSG 462
Query: 247 ALDLG 251
+D+G
Sbjct: 463 QVDIG 467
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 68 FCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIA----FYLYMLRAEVLL--- 120
+C + PQ P F A +H Q +A + ++L+A L
Sbjct: 156 YCPPGVRPKSRVVARLPQGLLPRSFPLEALHLFKHARQHLADDTFVFKFVLKACAGLGWH 215
Query: 121 ---TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+H V + GF +V A+++ Y S E+R+V FDEMP + +WN M
Sbjct: 216 RAGAQLHALVVQKGFEFHAYVHIALINVYVMSRCLVEARKV----FDEMPVKNVVSWNVM 271
Query: 178 IDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I +A A LLF++MP ++ SWT +I Y+ + EAL G +
Sbjct: 272 ITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLLRHMMAGGISPSE 331
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFK 270
+ + V+ A ++LG + +G + YC G SL VF +
Sbjct: 332 IIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLIDLYAKIGSVQNSLKVFDE 391
Query: 271 -LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L +NL+ W SI A+HG + EAL +F M ++PN
Sbjct: 392 MLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 432
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIR---SWTTMITSYSQNKQFREALDAFNKTKKS 226
N++ID YA++ + +F++M D R SWT++I+ ++ + EAL+ F + +++
Sbjct: 370 NSLIDLYAKIGSVQNSLKVFDEM--LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRA 427
Query: 227 GTGSDQVTMATVLSACAHLGALDLG 251
G +++T +V++ C+H G + G
Sbjct: 428 GIKPNRITFLSVINVCSHGGLVQQG 452
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 57/301 (18%)
Query: 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLR--- 115
++ I+ TS + + L+F + P+ ++Y+ +++ PL A+ + +M R
Sbjct: 24 RKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGP 83
Query: 116 -----------------AEVLLT-TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
A +L +H Q K G VFV+ +++ Y SN +S
Sbjct: 84 PPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYG-SNSRMDS-- 140
Query: 158 VSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
+RR+FD M R A+W T++ YA A +F++MP + S++ M+ +Y + +
Sbjct: 141 -ARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNR 199
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
FREAL+ F + + +VL ACA+LGALD+GR + +
Sbjct: 200 FREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIAT 259
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C S+ +LLVF +EK++ W ++ LA+HG + + F++M ++P
Sbjct: 260 ALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKP 319
Query: 310 N 310
+
Sbjct: 320 D 320
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A L+F + WT M++ + + + ++AF K SG D+VT +LS C+H
Sbjct: 274 ALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSH 333
Query: 245 LGALDLG 251
G ++ G
Sbjct: 334 SGLVNEG 340
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 146/327 (44%), Gaps = 57/327 (17%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQM 86
H + + +CS K+L+ ++A +++T D F A + I+ S F +DY VF Q+
Sbjct: 36 HPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI 95
Query: 87 QEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM 142
PN++ ++ A++S +P Q++ +L ML + + F+ P ++ A
Sbjct: 96 PHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLH--------QSPDFPDKFTFPFLIKAAS 147
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDI 197
++ K F + L ++ N++I YA+ EL +F P D+
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDV-----FILNSLIHFYAKCGELGLGYRVFVNXPRRDV 202
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
SW +MIT++ Q EAL+ F + + + +TM VLSACA + GR + Y
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSI------------T 283
C S+ + +F K+ EK+++ W ++
Sbjct: 263 IERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA+HG +A+ +F +M + V+PN
Sbjct: 323 QGLAMHGHGKDAIALFSKMQEDKVKPN 349
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACA 243
A+ +F+++P ++ +W T+I +Y+ + ++L F + +S D+ T ++ A +
Sbjct: 88 AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAAS 147
Query: 244 HLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNS 281
L L G+ I Y C LG VF ++++ WNS
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNS 207
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ A G EAL +F M +NV+PNG
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNG 237
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 59/268 (22%)
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA-----EVLLTTVHGQVWKNG- 131
VF ++ + ++ ++ +S +RH +A+ + M+ A E+ L +V G + G
Sbjct: 184 VFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGD 243
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
+V+ +V+N N F S +I Y + +L
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGS--------------------ALIHMYGKCGDLVSAR 283
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F+ M D +W MIT Y+QN EA+ F + S T DQ+T+ +LSACA +G
Sbjct: 284 RIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIG 343
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
ALDLG+ ++IY C SL + VF+ + KN + WN++
Sbjct: 344 ALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMIS 403
Query: 285 ALAIHGFAHEALGMFDRMTYEN--VRPN 310
ALA HG A EAL +F M E V PN
Sbjct: 404 ALAFHGQAQEALALFKSMMNEGGTVSPN 431
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
V RR DE +++I YAR ++ +F+++ D+ SW +MI+ YS+ +
Sbjct: 153 VIRRGLDE----DGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRH 208
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EA+ F + ++G +++++ +VL AC LG L LG ++ +
Sbjct: 209 AGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA 268
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + +F +++K+ + WN++ A +G + EA+ +F M + P+
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPD 328
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG--T 228
++D YA+ L +F MP + SW MI++ + + Q +EAL F G
Sbjct: 369 ALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTV 428
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
+ +T VLSAC H G +D GR
Sbjct: 429 SPNDITFVGVLSACVHAGLVDEGR 452
>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
Length = 534
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 54/251 (21%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------- 158
LRA + VHG + G V+ A+VD Y + ++RRV
Sbjct: 107 LRAVRVGIQVHGFLVNAGLGRAEHVRAALVDMYGNHGRVADARRVFDEMSATSVVLGNTM 166
Query: 159 ------------SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWT 201
R +FD M ER +WNT++ Y R +A LF +MP ++ SW
Sbjct: 167 VACYVRAGDVESGRVVFDRMVERDLISWNTLMMGYLRQGGAGVARELFEEMPDRNVNSWN 226
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------- 253
I +YSQ + + +A+ FN+ + + D TMA ++SACA LG+L + R
Sbjct: 227 MAIAAYSQERSWADAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKG 286
Query: 254 ------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
I +Y C S+ ++ L+F + K+ + +N + ALA HG +AL +F
Sbjct: 287 CVEMNFHVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVF 346
Query: 300 DRMTYENVRPN 310
D M+ E ++P+
Sbjct: 347 DEMSKERLQPD 357
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
+R+V L E F N++ID YA+ A LLF + D S+ MI + ++
Sbjct: 276 ARQVHGILRKGCVEMNFHVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALAR 335
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ R+AL F++ K D VT+ VLSACAH G + G+
Sbjct: 336 HGHGRDALQVFDEMSKERLQPDAVTLLGVLSACAHAGLVHDGK 378
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 145/333 (43%), Gaps = 82/333 (24%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDC--FLAKQFISFCT-SRFHFIDYTILVFPQM 86
IA ++KC S++ L ++A ++ + F + I FC S + IDY +F Q+
Sbjct: 60 IALLIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQI 119
Query: 87 QEPNVFVYHAF----SSLRHPLQAIAFYL-----------------YMLRAEVLLTT--- 122
Q PN+F +++ S + P + ++L+A +++
Sbjct: 120 QRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEE 179
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
VH V K+GF S FV+TA+V+ Y+ ++ ++FDE+ +R
Sbjct: 180 GQQVHANVLKSGFGSSPFVETALVNFYAKCEDIV----LASKVFDEITDRNLV------- 228
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+W+TMI+ Y++ EAL F +K+G D+VTM +V+
Sbjct: 229 -------------------AWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVI 269
Query: 240 SACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL 277
SACA GALD G+ + Y C + R+ VF + K+
Sbjct: 270 SACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTK 329
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W+S+ LAI+G A +AL F RM V+PN
Sbjct: 330 AWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 362
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 19/227 (8%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS + LE V+A ++K+ F+ ++F ++ I VF ++ + N
Sbjct: 168 LKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNF-YAKCEDIVLASKVFDEITDRN 226
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ + S + + L + R + K G +++ + S
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFR----------DMQKAGVVPDEVTMVSVISACAASG 276
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMIT 205
+ V + ++ E +++ YA+ A+ +F+ MP D ++W++MI
Sbjct: 277 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 336
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ N +AL+ F + +++ + VT VLSACAH G + GR
Sbjct: 337 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGR 383
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 98/199 (49%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R TW TMID YA+L A+ LF++MP
Sbjct: 260 NSMIDGYVKHGRIEDAKD----LFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 315
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ S+ +M+ Y QNK EAL+ F + K+S D+ T+ VLSA A LG L
Sbjct: 316 RDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 375
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LAIHG
Sbjct: 376 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGL 435
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 436 GESAFDMLLQIERRSIKPD 454
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 136/319 (42%), Gaps = 67/319 (21%)
Query: 34 LKKCSSIKELECVYATIVKT----NANLDCFLAKQFISFCTSRFHFIDYTILVF------ 83
L +C + +++ ++A ++ T N+NL + F + + R + ++ LVF
Sbjct: 22 LGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAA--SPRPYLAEFARLVFREYHVC 79
Query: 84 ---PQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
P + + F+++A S + P QA+ + ML V +
Sbjct: 80 SSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLG 139
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N
Sbjct: 140 FVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCL----GFARQIFDRMPQRDSVSFN 195
Query: 176 TMIDAYARL-----AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+MID Y + A LF+ MP ++ SW ++I+ Y+Q + +D +
Sbjct: 196 SMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTS---DGVDIASNLFAEMP 252
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
D ++ +++ G ++ + + F + ++++ W ++ + A
Sbjct: 253 EKDLISWNSMIDGYVKHGRIEDAKDL-------------FDAMPRRDVVTWATMIDGYAK 299
Query: 289 HGFAHEALGMFDRMTYENV 307
GF H+A +FD+M + +V
Sbjct: 300 LGFVHQAKTLFDQMPHRDV 318
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 130/305 (42%), Gaps = 81/305 (26%)
Query: 53 TNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIA 108
TN ++ +L +SFC+ + Y +F Q+Q PN+F ++ ++ +P+ A+
Sbjct: 71 TNPDMGKYLIFTLLSFCSP----MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALE 126
Query: 109 FY---------------LYMLRAEVLL------TTVHGQVWKNGFSSPVFVQTAMVDNYS 147
Y ++L+A L VH +NGF S VFVQ +V Y+
Sbjct: 127 LYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYA 186
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSY 207
+ +LF+ M ER TWN++I+ YA N P
Sbjct: 187 ACGH----AESAHKLFELMAERNLVTWNSVINGYA------LNGRP-------------- 222
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------- 257
EAL F + G D TM ++LSACA LGAL LGR +Y
Sbjct: 223 ------NEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNL 276
Query: 258 ------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C S+ ++ VF ++ EK+++ W S+ LA++GF EAL +F + +
Sbjct: 277 HAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERK 336
Query: 306 NVRPN 310
+ P+
Sbjct: 337 GLMPS 341
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA R A +F++M + SWT++I + N +EAL+ F + ++ G
Sbjct: 280 NALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLM 339
Query: 230 SDQVTMATVLSACAHLGALDLG--------------RGIQIY---CRSLGRSLLV----- 267
++T VL AC+H G +D G I+ Y LGR+ LV
Sbjct: 340 PSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHE 399
Query: 268 FFK--LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
F + + N + W ++ A IHG H ALG R + P
Sbjct: 400 FIQNMPMQPNAVVWRTLLGACTIHG--HLALGEVARAQLLQLEP 441
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F+++ +I +W TMI Y++++ AL+ + + S D T +L A A
Sbjct: 93 AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152
Query: 245 LGALDLGRGIQIYCRSL--GRSLLVFFK----------------------LREKNLLCWN 280
L +D+ G +++ ++ G LVF + + E+NL+ WN
Sbjct: 153 L--MDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
S+ A++G +EAL +F M V P+G
Sbjct: 211 SVINGYALNGRPNEALTLFREMGLRGVEPDG 241
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH K G S V +Q A++ YS S + +S +++LF+ +WN+MI Y
Sbjct: 181 VHSLAVKIGIESYVNLQNALIHMYS-SCREIDS---AQKLFNVGYSLDQISWNSMISGYL 236
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ E+ LF+ M D+ SW+ MI+ Y+Q+ +F E L F + + G D+ T+ +
Sbjct: 237 KCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVS 296
Query: 238 VLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKN 275
V+SAC HL ALD G+ I +Y R LG +L+ VF ++EK
Sbjct: 297 VVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVEDALEVFHGMKEKG 356
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ LA++G H +L F M V PN
Sbjct: 357 VSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPN 391
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 59/243 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V K F+ V+VQ +++ YS ++R+V FDE P +WN+++
Sbjct: 52 IHCHVLKMSFNFDVYVQNTLINLYSVCQNLGDARKV----FDESPVLDLVSWNSILAGKG 107
Query: 183 RLAEL--LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+ E LF++M D+ SW+ +I+ Y QN ++ EAL F K G D+V + +VLS
Sbjct: 108 DVTEAYRLFSEMCKKDLVSWSALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLS 167
Query: 241 ACAHLGALDLGR---------GIQIY---------------------------------- 257
ACAHL A+ G+ GI+ Y
Sbjct: 168 ACAHLFAVKTGKLVHSLAVKIGIESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQIS 227
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C + ++ +F + +K+L+ W+++ A H E L +F M + V
Sbjct: 228 WNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGV 287
Query: 308 RPN 310
+P+
Sbjct: 288 KPD 290
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+ID Y + + +F+ M + +W +I + N +LD F++ K G
Sbjct: 331 TLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVP 390
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+++T VL AC H+G ++ GR
Sbjct: 391 NEITFVAVLVACRHMGLVEEGR 412
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 78/311 (25%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVFVYH--- 95
+K+L+ ++A +++ + F+ + I FC + H ++Y + VF ++ +P+ F+++
Sbjct: 1 MKDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMI 60
Query: 96 -AFSSLRHPLQAIAFYLYM---------------------LRAEVLLTTVHGQVWKNGFS 133
F P +A +Y M L +L +H K G +
Sbjct: 61 RGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLN 120
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP 193
S VFV+ +V Y F+ SR+LF+E+P + WN +ID +
Sbjct: 121 SHVFVRNTLVHMYGT----FKDIEASRQLFEEIPNPELVAWNIIIDCHVSCG-------- 168
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
+F EAL+ F++ K G D+ T +LSAC+ LGALD GR
Sbjct: 169 ------------------KFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRW 210
Query: 254 IQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ C +L + +F + +KN + WN++ LA HG+
Sbjct: 211 VHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGY 270
Query: 292 AHEALGMFDRM 302
A+EAL +F M
Sbjct: 271 ANEALALFSNM 281
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+F K+ D + TMI + + R+A D + + ++ G SD T + +L C LG
Sbjct: 44 VFEKIGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGL 103
Query: 248 LDLGRGIQIYCRSLGRSL------------------------LVFFKLREKNLLCWNSIT 283
+ LGR ++C +L R L +F ++ L+ WN I
Sbjct: 104 VLLGR--LMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIII 161
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+ G +EAL MF RM + P+
Sbjct: 162 DCHVSCGKFNEALEMFSRMLKFGIEPD 188
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 146/331 (44%), Gaps = 56/331 (16%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
+ L++CSS++E++ ++ + F++ + ++F + Y +F + P
Sbjct: 7 VVGLLEQCSSMREMKQIHGHAITHGLARFAFISSKLLAFYARSD--LRYAHTLFSHIPFP 64
Query: 90 NVFVYHAFSSLRHPLQAIAFYLYMLRAEV-------------------LLTTVHGQVWKN 130
N+F Y+ + P + F++ ML A V L +H + +
Sbjct: 65 NLFDYNTIITAFSPHYSSLFFIQMLNAAVSPNSRTFSLLLSKSSPSLPFLHQLHSHIIRR 124
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLA 185
G S +V T+++ YS S R +RRLFD+ P + A W +++ Y A
Sbjct: 125 GHVSDFYVITSLLAAYSNHG----STRAARRLFDQSPYKNVACWTSLVTGYCNNGLVNDA 180
Query: 186 ELLFNKMPAWDIR--SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF+ +P + S++ M++ Y +N FRE + F + K + +A+VLSACA
Sbjct: 181 RNLFDAIPERERNDVSYSAMVSGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACA 240
Query: 244 HLGALDLGRGIQIYCR----------SLGRSLL--------------VFFKLREKNLLCW 279
+GA + G+ I Y LG +L+ VF ++ K++ W
Sbjct: 241 SVGAFEEGKWIHAYVDQNKSQCYYELELGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAW 300
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ LAI+ EAL +F+ M RPN
Sbjct: 301 SAMVLGLAINAKNQEALELFEEMEKVGPRPN 331
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y + A+ +F M D+ +W+ M+ + N + +EAL+ F + +K G
Sbjct: 271 ALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRP 330
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-----NLLCWNSITEA 285
+ VT VL+AC H DL G +L +F + +K ++ + + +
Sbjct: 331 NAVTFIGVLTACNH---KDL----------FGEALKLFGYMSDKYGIVASIEHYGCVVDV 377
Query: 286 LAIHGFAHEALGMFDRMTYENVRPNG 311
LA G EAL M V P+G
Sbjct: 378 LARSGKIEEALEFIKSM---EVEPDG 400
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 34/210 (16%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA-YARL---- 184
NG + V TAM+ ++ + ++R V FD M +R ATWN MI YA+
Sbjct: 228 NGVVNMVLC-TAMISGFAKTGSVDDARSV----FDGMRQRDVATWNVMIGVMYAKCGLVE 282
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A +F+ MP ++ WT+MI+ Y+Q +F++A+ F + SG +D T+ATV+S+C
Sbjct: 283 DARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCG 342
Query: 244 HLGALDLGRGIQIYC--RSLGRSLLV--------------------FFKLREKNLLCWNS 281
+GALDLGR + YC LG+ + V F L +++ W
Sbjct: 343 QMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTV 402
Query: 282 ITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
+ A++G + EAL +F +M E V PN
Sbjct: 403 MIMGFAVNGLSGEALDLFAQMEEEGEVMPN 432
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 26/191 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY- 181
VH V+KNGF + + T +VD Y+ + ++RRV FD + + +NTMI AY
Sbjct: 126 VHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRV----FDRLLVKDAQLYNTMIAAYM 181
Query: 182 ----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
LAE LF MP + + M+ YS A F + V
Sbjct: 182 EAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGV---VNMVLCTA 238
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL-AIHGFAHEAL 296
++S A G++D R VF +R++++ WN + + A G +A
Sbjct: 239 MISGFAKTGSVDDARS-------------VFDGMRQRDVATWNVMIGVMYAKCGLVEDAR 285
Query: 297 GMFDRMTYENV 307
+FD M NV
Sbjct: 286 KVFDAMPERNV 296
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/407 (22%), Positives = 157/407 (38%), Gaps = 115/407 (28%)
Query: 19 PTSVSFIRI---HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
PT +R+ + ++ C + K++ + A I+ + ++ + ++ C +
Sbjct: 90 PTGGGHLRLTALRCLRENMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICAT-LKR 148
Query: 76 IDYTILVFPQMQEPNVFVYHAF---SSLRHPLQAIAFYLYMLRA----------EVLLTT 122
+ Y +F Q+ +PN+ ++++ + + + F + ++ V+L +
Sbjct: 149 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 208
Query: 123 ------------VHGQVWKNGFSSPVFVQTAMVDNYSYSN----------KFFESRRVS- 159
VH + K GF FV T ++D YS + FE V+
Sbjct: 209 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 268
Query: 160 ----------------RRLFDEMPERKFATWNTMIDAYARLAEL---------------- 187
RRLFD PER WN M+ Y ++
Sbjct: 269 TSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVM 328
Query: 188 --------------------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKS 226
LF +MP +I SW +I Y+ N F E L +F + +S
Sbjct: 329 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 388
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RS 264
+ T+ TVLSACA LGALDLG+ + +Y S G +
Sbjct: 389 DVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 448
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ VF + K+L+ WN++ LA+H +AL +F +M +P+G
Sbjct: 449 ISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDG 495
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F M D+ SW T+I + + + +AL+ F + K +G
Sbjct: 433 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 492
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D +T +L AC H+G ++ G Y +S+ L+ ++ + + + LA
Sbjct: 493 PDGITFIGILCACTHMGLVEDGFA---YFQSMADDYLIMPQIEH-----YGCMVDMLARA 544
Query: 290 GFAHEALGMFDRMTYE 305
G +A +M E
Sbjct: 545 GRLEQAXAFVRKMPVE 560
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 29/181 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD+MP R +WNT+++ YA + ++ +F+ MP ++ SW +I Y+QN +
Sbjct: 56 ARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRV 115
Query: 214 REALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGR--------- 263
E L +F + G+ + TM VLSACA LGA D G+ + Y +LG
Sbjct: 116 SEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKN 175
Query: 264 --------------SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ VF ++ ++L+ WN++ LA HG EAL +F M + P
Sbjct: 176 ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISP 235
Query: 310 N 310
+
Sbjct: 236 D 236
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + +A +F + D+ SW TMI + + EAL+ F++ K SG
Sbjct: 175 NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGIS 234
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT VL AC H+G ++ G
Sbjct: 235 PDKVTFVGVLCACKHMGLVEDG 256
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIY 257
WT+MI Y NK A F+ + + D V T++S +G + R + Q+
Sbjct: 9 WTSMINGYLLNKDLVSARRYFDLSPE----RDIVLWNTMISGYIEMGNMLEARSLFDQMP 64
Query: 258 CRSL--------GRSLL--------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
CR + G + + VF + E+N+ WN + + A +G E LG F R
Sbjct: 65 CRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKR 124
Query: 302 MTYEN-VRPN 310
M E V PN
Sbjct: 125 MVDEGSVVPN 134
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 33/204 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
+ + M+ Y E+R LFD+MP R +WNT+++ YA + ++ +F+
Sbjct: 90 IVLWNTMISGYIEMGNMLEARS----LFDQMPCRDVMSWNTVLEGYANIGDMEACERVFD 145
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALD 249
MP ++ SW +I Y+QN + E L +F + G+ + TM VLSACA LGA D
Sbjct: 146 DMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFD 205
Query: 250 LGRGIQIYCRSLGR-----------------------SLLVFFKLREKNLLCWNSITEAL 286
G+ + Y +LG ++ VF ++ ++L+ WN++ L
Sbjct: 206 FGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGL 265
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A HG EAL +F M + P+
Sbjct: 266 AAHGHGTEALNLFHEMKNSGISPD 289
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + +A +F + D+ SW TMI + + EAL+ F++ K SG
Sbjct: 228 NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGIS 287
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT VL AC H+G ++ G
Sbjct: 288 PDKVTFVGVLCACKHMGLVEDG 309
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F +M ++ WT+MI Y NK A F+ + + D V T++S
Sbjct: 47 ANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPE----RDIVLWNTMISGYIE 102
Query: 245 LGALDLGRGI--QIYCRSL--------GRSLL--------VFFKLREKNLLCWNSITEAL 286
+G + R + Q+ CR + G + + VF + E+N+ WN + +
Sbjct: 103 MGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 162
Query: 287 AIHGFAHEALGMFDRMTYEN-VRPN 310
A +G E LG F RM E V PN
Sbjct: 163 AQNGRVSEVLGSFKRMVDEGSVVPN 187
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+++D Y + +++ LF++MP+R TW TM+D YA+L A+ LF++MP
Sbjct: 256 NSLIDGYVKHGRMEDAKS----LFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPL 311
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +MIT Y QN+ +EA+ FN K+S D+ T+ VLSA A LG L
Sbjct: 312 RDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD 371
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
I +Y C S+ +S+ VF ++ K++ WN++ LAIHG
Sbjct: 372 IHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGL 431
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 432 GESAFDMLLQIEKRSIKPD 450
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 75/294 (25%)
Query: 71 SRFHFIDYTILVFPQMQEPNVF--VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT------ 122
+RF F +Y + ++P ++ V + S P +A+ + ML V +
Sbjct: 68 ARFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLV 127
Query: 123 ---------------VHGQVWKNGFSSPVFVQTAMVDNY------SYSNKFFE--SRRVS 159
+HG + K G S +++Q ++ Y Y+ + F+ RR S
Sbjct: 128 LKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDS 187
Query: 160 -------------------RRLFDEMPERK--FATWNTMIDAYAR------LAELLFNKM 192
R LFD MP+ K +WN MI YA+ +A+ LF++M
Sbjct: 188 VSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEM 247
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P D+ SW ++I Y ++ + +A FNK K D VT AT++ A LG + +
Sbjct: 248 PEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPK----RDVVTWATMVDGYAKLGFVHQAK 303
Query: 253 GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
+ F ++ ++++ +NS+ + + EA+G+F+ M E+
Sbjct: 304 SL-------------FDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKES 344
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 29/198 (14%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNK 191
F A++D Y R +R LFD+M ER WN+MID YAR + LF +
Sbjct: 213 FSWGALIDGYGKQGGAGVDR--ARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEE 270
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP ++ SW+ +I + + + +EAL+ F + G D+V +SACA LGAL+ G
Sbjct: 271 MPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQG 330
Query: 252 RGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R + Y C + ++L+F + E++++ WN + L H
Sbjct: 331 RWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTH 390
Query: 290 GFAHEALGMFDRMTYENV 307
G+ +A+ +F RM E V
Sbjct: 391 GYGLDAVMLFHRMEAERV 408
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP--ERKFATWNTMIDA 180
VH + + G + +F A++ Y R+V FDE R +WN+M+
Sbjct: 135 VHAEAVRRGLGADLFTVNALISFYCRILDCISGRKV----FDEAGGVSRDLVSWNSMVAG 190
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y E+ LF++MP D SW +I Y KQ +D + T D V
Sbjct: 191 YVGCGEMGLAQELFDEMPQRDAFSWGALIDGY--GKQGGAGVDRARELFDQMTERDLVCW 248
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ A G +D R + F ++ E+N++ W+ + + G A EA
Sbjct: 249 NSMIDGYARHGRMDEARSL-------------FEEMPERNVISWSIVIDGHVRCGEAKEA 295
Query: 296 LGMFDRMTYENVRPN 310
L F M +RP+
Sbjct: 296 LEHFQSMLRCGIRPD 310
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI---- 178
+H + K S V VQTA++D Y + ++ +F+ MPER TWN MI
Sbjct: 333 LHSYLEKKKVLSDVVVQTALIDMYMKCGRM----DLAMLIFESMPERSVVTWNVMIVGLG 388
Query: 179 -DAYARLAELLFNKMPAW----DIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
Y A +LF++M A D S M+T+ + E L+ F++ KK
Sbjct: 389 THGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKD 441
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ID Y + LA L+F MP + +W MI + +A+ F++ +
Sbjct: 350 TALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVA 409
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCR 259
D +++ +L+AC H G + G++I+ R
Sbjct: 410 VDDLSLLAMLTACTHAGLVS--EGLEIFHR 437
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 34/187 (18%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++RRLFDE+P +WN ++D YA+ +L +F +MP D+ SW+ MI + +
Sbjct: 10 LARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGE 69
Query: 213 FREALDAFN-----KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------- 257
REAL F + G ++ VTM +VL ACAHLG L GR + Y
Sbjct: 70 HREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNI 129
Query: 258 ------------CRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
C ++ +L VF + ++L WN++ LA+HG + E+L MF +M
Sbjct: 130 RLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKME 189
Query: 304 YENVRPN 310
+ V P+
Sbjct: 190 HAGVVPD 196
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 175 NTMIDAYARLAELL-----FNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+++D YA+ ++ F +P D+ W +I + + RE+L F K + +G
Sbjct: 133 TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 192
Query: 228 TGSDQVTMATVLSACAHLGALD 249
D++T ++LSAC H G +D
Sbjct: 193 VVPDEITYLSLLSACVHGGLVD 214
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + +G VFV T ++ Y K VSRR+FD+MP R TWN M+ YA
Sbjct: 138 IHALIVTSGIEPDVFVSTELIRVYGECGKLA----VSRRVFDDMPSRSTITWNAMLHQYA 193
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK---TKKSGTGSDQVT 234
R ++ LF MP D+ SW T++ Y + REAL F + + T
Sbjct: 194 RHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPT 253
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL- 271
M+T+L ACA G L+ G + Y C S+ +L VF K
Sbjct: 254 MSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAP 313
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R+++L W ++ LA+HG A +AL MFD M + P+
Sbjct: 314 RKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPD 352
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 177 MIDAYARLAEL-----LFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y + + +F K P D+ SWTT+I + + + +AL F+ + +G
Sbjct: 292 LIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICP 351
Query: 231 DQVTMATVLSACAHLGALDLGRG 253
D VT+ VL+ACAH G +D G G
Sbjct: 352 DDVTLVGVLNACAHGGLVDEGLG 374
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ AYA L A LF++MP + T M ++ + Q +A+ F G
Sbjct: 51 ALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFP 110
Query: 231 DQVTMATVLSACAHLG-------------ALDLGRGIQ-----------IY--CRSLGRS 264
D V +A L AC G AL + GI+ +Y C L S
Sbjct: 111 DNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVS 170
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
VF + ++ + WN++ A HG A +F M +V
Sbjct: 171 RRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDV 213
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 163/401 (40%), Gaps = 112/401 (27%)
Query: 19 PTSVSFIRIHI--IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFIS--FCTSRFH 74
P+ + H+ + + L+ ++EL +A ++K +LD A + IS R
Sbjct: 51 PSQRRLVEQHLASLPHGLQHLHHVQEL---HAQLLKHGLHLDPLAASKLISSYALQRRLP 107
Query: 75 FIDYTILVFPQMQE----PNVFV-YHAFSSLRH---------PLQAIAFYLYMLRAE--- 117
FP Q PN + +A ++L H P + Y ++++A
Sbjct: 108 ASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSS 167
Query: 118 --VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV----------------- 158
L VH V K G +V A++D YS + F ++ +V
Sbjct: 168 GLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMA 227
Query: 159 ----------SRRLFDEMPERKFATWNTMIDAYAR------------------------- 183
+RR+FDEMP++ +WNT++D Y +
Sbjct: 228 AMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTV 287
Query: 184 -----------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+A ++F+KMP ++ +WT M+++ +QN EA F + K++ D
Sbjct: 288 VSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDV 347
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRS--LGRSLLV-------FFK------------- 270
+ ++L+ACA G+L LG+ I Y R+ LGRS V F K
Sbjct: 348 AAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDT 407
Query: 271 -LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ EK+ + WN+I A+HG +AL F +M + RP+
Sbjct: 408 EIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPD 448
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMPAWDIRSWTTMITSYS 208
+R+ R + R N MID + + A+ +F+ ++ D SW T+I ++
Sbjct: 366 GKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFA 425
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF 268
+ +ALD F + K G D VTM VLSAC H+G ++ GR + ++ R +
Sbjct: 426 MHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQ---HFSNMERDYGIV 482
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + + L G EA+G+ M ++ PN
Sbjct: 483 PQIEH-----YGCMIDLLGRGGLIEEAVGLIKSMPWD---PN 516
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 150/386 (38%), Gaps = 113/386 (29%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV--- 93
C S KE ++ ++ + A + + S + + + +F ++EP+ F+
Sbjct: 69 CGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNT 128
Query: 94 -YHAFSSLRHPLQAIAFYL-YMLRAEV--------LLTTV-------------HGQVWKN 130
+ ++ P A+ FY M+R V LL V H ++ K
Sbjct: 129 IMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKF 188
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLF 163
GF +FV+ +++ YS + ++R + +R LF
Sbjct: 189 GFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELF 248
Query: 164 DEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQN-------- 210
+EMPER +WN+MI Y AE LFNKMP DI SW MI Y+Q
Sbjct: 249 EEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACE 308
Query: 211 -----------------------KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
K + E L F+K T ++ T+ +VL+ACAHLG
Sbjct: 309 LFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGE-TMPNEATLVSVLTACAHLGR 367
Query: 248 LDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
LD G+ I Y C ++ + VF K+ ++++ WNS+
Sbjct: 368 LDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIM 427
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
+HG A +AL MF M PN
Sbjct: 428 GYGMHGQADKALEMFLDMEKRGPMPN 453
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LA +F+KM + SW +MI Y + Q +AL+ F +K G + T VLSACA
Sbjct: 406 LARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACA 465
Query: 244 HLGAL 248
H G +
Sbjct: 466 HSGMI 470
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 35/210 (16%)
Query: 124 HGQVWKNGF--SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H + K+G S F+ +A+V Y+ S E+RRV FDEMP R A +N ++ AY
Sbjct: 110 HALLVKSGHFASGDPFLGSALVSFYAKSRLLDEARRV----FDEMPRRDTAVYNALLSAY 165
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTM 235
AR AE LF +M ++ SWT M++ Y+QN + A++ F + + +G +++T+
Sbjct: 166 ARCGLVDAAEKLFGEMTERNVVSWTAMVSGYAQNGRHEAAVETFLEMWEGAGVQPNELTV 225
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
++VL ACA +GA++LG ++ Y C S+ R+ VF +
Sbjct: 226 SSVLPACAAVGAMELGTKVEEYARGKGHLGNVFVTNALLEMYAKCGSIQRAWQVFQGIGH 285
Query: 274 KNLLC-WNSITEALAIHGFAHEALGMFDRM 302
+ LC WN++ A A+HG EAL +F ++
Sbjct: 286 RRDLCSWNTMIMAFAVHGLWMEALALFHKL 315
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-- 181
H Q GF +FV +A+VD YS + R +R LFDE+ R +W +MI Y
Sbjct: 99 HQQALIFGFEPDLFVSSALVDMYSKCGEL----RDARTLFDEISHRNIVSWTSMITGYVQ 154
Query: 182 ---ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMAT 237
A A +F+ M D+ SW ++I Y+QN E+++ F++ K G + VT++
Sbjct: 155 NDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSA 214
Query: 238 VLSACAHLGALDLGRGIQ--------------------IYCR--SLGRSLLVFFKLREKN 275
VL ACAH G+ LG+ I +YC+ + + F ++REKN
Sbjct: 215 VLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKN 274
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ +HG A EAL +F M V+PN
Sbjct: 275 VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPN 309
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
++ +F +M + Y+A + L A+ ++ L +H QV K G S VFV
Sbjct: 192 SMEIFHRMVKDGEINYNAVT-----LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFV 246
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIR 198
T+++D Y K ++R+ FD M E+ +++
Sbjct: 247 GTSIIDMYCKCGKV----EMARKAFDRMREK--------------------------NVK 276
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
SW+ M+ Y + +EAL+ F + +G + +T +VL+AC+H G L+ G
Sbjct: 277 SWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 188 LFNK-MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LFNK + ++ SW ++I +++ EAL AF+ +K ++ T + +C+ L
Sbjct: 31 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL- 89
Query: 247 ALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
LDL G Q + C L + +F ++ +N++ W S+
Sbjct: 90 -LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSM 148
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
+ AH AL +FD M +V
Sbjct: 149 ITGYVQNDDAHRALRVFDGMAERDV 173
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 141/330 (42%), Gaps = 82/330 (24%)
Query: 63 KQFISFCTSRFHF-IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFY------- 110
++ + C + F + Y VF + P++F+++A ++ P A A Y
Sbjct: 35 RELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEAS 94
Query: 111 ---------LYMLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKF--- 152
Y+LRA L VHG V K GF +V+ A+++ ++
Sbjct: 95 RLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVA 154
Query: 153 -------FESRRVS-----------------RRLFDEMPERKFATWNTMIDAYARLAEL- 187
E V+ R++FDE + WN M+ AYA+ E+
Sbjct: 155 SVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEME 214
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF++ P D+ SW T+IT Y+ + AL+ F++ + +G D+ T+ ++LS CA
Sbjct: 215 NARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCA 274
Query: 244 HLGALDLGRGI--QIY---------------------CRSLGRSLLVFFKLREKNLLCWN 280
+ G LD GR I Q++ C L ++ F +++ ++ WN
Sbjct: 275 NTGLLDAGRMIHHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWN 334
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ LA HG A +++ F +M + + PN
Sbjct: 335 SVIGGLAFHGQAEQSVRFFKKMLEKRIHPN 364
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 29/145 (20%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ YA+ +L FN M D+ +W ++I + + Q +++ F K +
Sbjct: 303 NALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIH 362
Query: 230 SDQVTMATVLSACAHLGALDLGR----------GIQIYCRS-------LGRSLL------ 266
++++ VL AC+H G ++ G+ GI+ R LGR+ L
Sbjct: 363 PNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYA 422
Query: 267 VFFKLR-EKNLLCWNSITEALAIHG 290
+ +R E + + W ++ A HG
Sbjct: 423 IVSNMRCEPSAVVWRTLLGACRTHG 447
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V + GF +V TA+++ Y S E+R+V FDEMP + +WN MI +A
Sbjct: 501 LHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKV----FDEMPVKNVVSWNVMITGFA 556
Query: 183 RLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
E LLF++MP ++ SWT +I Y++ + EAL G ++T+
Sbjct: 557 GWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLA 616
Query: 238 VLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFK-LREK 274
V+ A ++LG + +G + YC G SL VF + L +
Sbjct: 617 VIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRR 676
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL+ W SI A+HG + EAL +F M ++PN
Sbjct: 677 NLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKM-PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N++ID YA++ + +F++M ++ SWT++I+ ++ + EAL+ F + +++G
Sbjct: 650 NSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGI 709
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+++T +V++AC+H G ++ G
Sbjct: 710 KPNRITFLSVINACSHGGLVEQG 732
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 77/325 (23%)
Query: 32 NQLKKC----SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
++L KC ++I++ + VY + + FL ++ +F+ +D + +F QM
Sbjct: 61 SELIKCCLARNAIEQGKQVYKHLSSNGYQPNIFLINMLLNMYV-KFNLLDEALTLFDQMP 119
Query: 88 EPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVL------------------LTTVHG 125
E NV + AFS+ + +A+ F + MLR V L +HG
Sbjct: 120 ERNVVSWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYSSILRACDGVYNLRQLHG 179
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ K+G S V+V++A++D YS K+ ES A
Sbjct: 180 NIIKSGLDSDVYVRSALIDIYS---KWGESEN---------------------------A 209
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+FN+M D+ W ++I ++QN EAL+ F K++G ++Q + +VL AC L
Sbjct: 210 LYVFNEMVTGDLIVWNSIIAGFAQNNDGDEALNLFKSMKRNGFPANQSALTSVLRACTGL 269
Query: 246 GALDLGRGIQIY--------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L+LGR + ++ C SL + VF ++ EK+++ W+++
Sbjct: 270 ALLELGRQVHVHVFKHDQDLVLNNALLDMYCKCGSLEDANYVFTRMVEKDVISWSTMIAG 329
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
A +G++ EAL +F+ M +PN
Sbjct: 330 FAQNGYSREALKLFESMKVSGTKPN 354
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 26/227 (11%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C + L ++ I+K+ + D ++ I S++ + + VF +M ++ V
Sbjct: 165 LRACDGVYNLRQLHGNIIKSGLDSDVYVRSALIDI-YSKWGESENALYVFNEMVTGDLIV 223
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149
+++ F+ +A+ + M R NGF + T+++ +
Sbjct: 224 WNSIIAGFAQNNDGDEALNLFKSMKR--------------NGFPANQSALTSVLRACTGL 269
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
R+V +F ++ N ++D Y + L +F +M D+ SW+TMI
Sbjct: 270 ALLELGRQVHVHVFKH--DQDLVLNNALLDMYCKCGSLEDANYVFTRMVEKDVISWSTMI 327
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
++QN REAL F K SGT + +T+ VL AC+H G L+ G
Sbjct: 328 AGFAQNGYSREALKLFESMKVSGTKPNYITILGVLFACSHAGLLEAG 374
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V G V + A++D Y S +++ +F+ + + +W TMI +A
Sbjct: 246 LHEFVDSKGVRCTVRLMNAVMDMYVKCG----SLELAKSVFERIDNKTVVSWTTMIVGHA 301
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
RL A +LF++MP D+ W ++ Y QNKQ +EA+ F++ ++S +++TM
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVN 361
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
+LSAC+ LGAL++G + Y C ++ +++ +F ++ +KN
Sbjct: 362 LLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKN 421
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W ++ LA HG A EA+ F RM ++P+
Sbjct: 422 ALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPD 456
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 54/213 (25%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
V G V K GFS+ VFV A V +S S ++RRLFDE P R
Sbjct: 141 AAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMV----LARRLFDESPAR----------- 185
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATV 238
D+ SW T+I Y ++ REAL+ F + + G D+VTM
Sbjct: 186 ---------------DVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGA 230
Query: 239 LSACAHLGALDLG---------RGIQ-------------IYCRSLGRSLLVFFKLREKNL 276
+S CA +G L+LG +G++ + C SL + VF ++ K +
Sbjct: 231 VSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTV 290
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ W ++ A G +A +FD M +V P
Sbjct: 291 VSWTTMIVGHARLGMMEDARMLFDEMPERDVFP 323
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +++D YA+ + +F ++P + +WT MI + + EA++ F +
Sbjct: 392 ALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDL 451
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D++T VLSAC H G + GR
Sbjct: 452 GLQPDEITFIGVLSACCHAGLVKEGR 477
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 32/204 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFN 190
V + MV Y E+R+ LF EMP R WNT++ YA E LF
Sbjct: 233 VVLWNIMVSGYIEGGDMVEARK----LFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFE 288
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACAHLGALD 249
+MP +I SW +I Y+ N F E L +F + +S + T+ TVLSACA LGALD
Sbjct: 289 EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALD 348
Query: 250 LGRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALA 287
LG+ + +Y S +G +L+ VF + K+L+ WN++ LA
Sbjct: 349 LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 408
Query: 288 IHGFAHEALGMFDRMTYENVRPNG 311
+H +AL +F +M +P+G
Sbjct: 409 MHSRGADALNLFFQMKNAGQKPDG 432
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F M D+ SW T+I + + + +AL+ F + K +G
Sbjct: 370 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 429
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D +T +L AC H+G ++ G Y +S+ L+ ++ + + + LA
Sbjct: 430 PDGITFIGILCACTHMGLVEDGFA---YFQSMADDYLIMPQIEH-----YGCMVDMLARA 481
Query: 290 GFAHEALGMFDRMTYE 305
G +A+ +M E
Sbjct: 482 GRLEQAMAFVRKMPVE 497
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 26/140 (18%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+++P +I W +M Y+Q++ +RE + F + K + T VL +C
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 245 LGALDLGRGIQIYC------------------------RSLGRSLLVFFKLREKNLLCWN 280
+ AL G Q++C ++G + +F ++ E+N++ W
Sbjct: 149 INALIEGE--QVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWT 206
Query: 281 SITEALAIHGFAHEALGMFD 300
S+ + A +FD
Sbjct: 207 SMINGYILSADLVSARRLFD 226
>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 51/282 (18%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVL-LTTVHGQVWKN 130
ID + +F +M E N+ ++ A +A+ + M R +V+ T + + KN
Sbjct: 156 IDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKN 215
Query: 131 GFSSP------------VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
G + AM+ Y+ +N+ E+ + LF MPER FA+WNTMI
Sbjct: 216 GKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQ----LFQVMPERDFASWNTMI 271
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ R E+ LF++MP ++ SWTTMIT Y +NK+ EAL+ F+K + G+ V
Sbjct: 272 TGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNV 331
Query: 234 -TMATVLSACAHLGALDLGRGI-QIYCRSLGR-----------------SLLVFFKLREK 274
T ++LSAC+ L L G+ I Q+ +S+ + L+ K+ +
Sbjct: 332 GTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDN 391
Query: 275 NLLC------WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+C WNS+ A HG EA+ M+++M +P+
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPS 433
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V TAMV Y S + ++ LF EMPER +WNTMID YA+ + LF+
Sbjct: 109 VVTWTAMVSGYLRSKQL----SIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFD 164
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+MP +I SW +M+ + Q + EA++ F + + D V+ ++ A G +D
Sbjct: 165 EMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR----DVVSWTAMVDGLAKNGKVDE 220
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
R + F + E+N++ WN++ A + EA +F M
Sbjct: 221 ARRL-------------FDCMPERNIISWNAMITGYAQNNRIDEADQLFQVM 259
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 157 RVSRRLFDEMPERK-FATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
R +R LFD + RK TW M+ Y R +AE+LF +MP ++ SW TMI Y+Q+
Sbjct: 94 REARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQS 153
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270
+ +AL+ F++ + V+ +++ A G +D ++ +F +
Sbjct: 154 GRIDKALELFDEMPERNI----VSWNSMVKALVQRGRID-------------EAMNLFER 196
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ ++++ W ++ + LA +G EA +FD M N+
Sbjct: 197 MPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNI 233
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 23/155 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQ 212
+R+LFD +PER TW +I Y +L ++ LF+++ + ++ +WT M++ Y ++KQ
Sbjct: 65 ARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQ 124
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
A F + + V+ T++ A G +D ++L +F ++
Sbjct: 125 LSIAEMLFQEMPERNV----VSWNTMIDGYAQSGRID-------------KALELFDEMP 167
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
E+N++ WNS+ +AL G EA+ +F+RM +V
Sbjct: 168 ERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDV 202
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
D+ SW +MI Y+ + +EA++ +N+ +K G VT +L AC+H G ++ G
Sbjct: 398 DLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 57/282 (20%)
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+F M E + Y+A FSS P +++ Y +LR E + T
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
VH QV + GF + FV + +VD Y+ R +RR+F EM + +N
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI----RDARRVFQEMEAKTVVMYN 216
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T+I R A+ LF M D +WTTM+T +QN EALD F + + G G
Sbjct: 217 TLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGI 276
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
DQ T ++L+AC L A + G+ I Y CRS+ + VF
Sbjct: 277 DQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF 336
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +N++ W ++ + + EA+ F M + ++P+
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPD 378
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 56/213 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + + VFV +A+VD YS
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSI------------------------------ 329
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
RLAE +F +M +I SWT MI Y QN EA+ AF++ + G D T+ +V+S+C
Sbjct: 330 RLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSC 389
Query: 243 AHLGALDLGRGIQIYCRSLGRSLL------------------------VFFKLREKNLLC 278
A+L +L+ G Q +C +L L+ +F ++ + +
Sbjct: 390 ANLASLE--EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W ++ A G A E + +F++M ++P+G
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLVNGLKPDG 480
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT ++T Y+Q + +E +D F K +G
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLK 477
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT VLSAC+ G ++ G
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKG 499
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA--RLA---EL 187
+ P F+ ++ Y+ S + +RRV FDEMP+ T N ++ A A RL E
Sbjct: 45 APPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMER 100
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLG 246
LF MP D S+ +IT +S ++ + ++ ++T++ ++ + L
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 247 ALDLGRGIQIYCRSLG 262
LG + LG
Sbjct: 161 DRALGHSVHCQVLRLG 176
>gi|242049246|ref|XP_002462367.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
gi|241925744|gb|EER98888.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
Length = 532
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 39/222 (17%)
Query: 122 TVHGQVWKNGFSSPV----FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+H + +G +P V T++V Y+ + + ++R+V FDEM R A WN M
Sbjct: 160 ALHARALASGMLAPTGESGHVMTSLVGVYAAARQLEDARKV----FDEMLTRAVAAWNCM 215
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ AY R E+ F +MP D +WTTMI + + EA+D F + +K+ D
Sbjct: 216 LAAYVRCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRAAEAVDLFWRMRKARVKDDT 275
Query: 233 VTMATVLSACAHLGALDLGRGIQ-----------------------IYCRSLGRSLLVFF 269
VTM +L+ACA LG L+LGR + + C ++ + +F
Sbjct: 276 VTMVALLTACAELGDLELGRWVHARVDLEGSQWRTVLLDNALIHMYLKCGAIEDARCLFG 335
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ ++ + W ++ LAIHG EAL +F RM RP+G
Sbjct: 336 MMPRRSTVSWTTMISGLAIHGHPQEALNLFHRM---QDRPDG 374
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF MP SWTTMI+ + + +EAL+ F++ + D TM VL AC+H
Sbjct: 330 ARCLFGMMPRRSTVSWTTMISGLAIHGHPQEALNLFHRMQDR---PDGATMLAVLRACSH 386
Query: 245 LGALDLGR 252
G +D R
Sbjct: 387 AGRIDDAR 394
>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 117/285 (41%), Gaps = 56/285 (19%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV-------- 118
+ F IDYTI +F + P FV + A+S P +A+ FY ML++
Sbjct: 92 ADFGDIDYTIFIFKFIASPGTFVVNNVVKAYSLSSEPNKALVFYFEMLKSGFCPNSYTFV 151
Query: 119 -------------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165
L HGQ KNG + V+ +++ Y +++++FDE
Sbjct: 152 SLFGCCAKVGCAKLGKKYHGQAVKNGVDRILPVENSLIHCYGCCGDM----GLAKKVFDE 207
Query: 166 MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
M R +WN++ID YA L EL LF MP ++ SW +I+ Y + L F
Sbjct: 208 MSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVLMLF 267
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------C 258
K G + T+ +VLSAC L GR + + C
Sbjct: 268 RKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVHGFIVKKFSSMNVIHETTLIDMYNRC 327
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
+ + +F K+ +NL CWN++ +HG + L +F M
Sbjct: 328 HKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPDDGLELFKDMV 372
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VHG + K S V +T ++D Y+ +K ++RR+FD++ R WN MI +
Sbjct: 300 SVHGFIVKKFSSMNVIHETTLIDMYNRCHKV----EMARRIFDKVVRRNLGCWNAMILGH 355
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L N ++ F++ +D K+ D+VT VL A
Sbjct: 356 C----LHGNPDDGLEL---------------FKDMVDRAGLGKRDSVHPDEVTFIGVLCA 396
Query: 242 CAHLGALDLGR 252
CA G L G+
Sbjct: 397 CARAGLLTEGK 407
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG------- 253
++ +YS + + +AL + + KSG + T ++ CA +G LG+
Sbjct: 116 NNVVKAYSLSSEPNKALVFYFEMLKSGFCPNSYTFVSLFGCCAKVGCAKLGKKYHGQAVK 175
Query: 254 -------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
I Y C +G + VF ++ ++L+ WNSI + A G A G+
Sbjct: 176 NGVDRILPVENSLIHCYGCCGDMGLAKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGL 235
Query: 299 FDRMTYENV 307
F+ M NV
Sbjct: 236 FEVMPERNV 244
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V G V + A++D Y S ++ +F+ + R +W TMI +A
Sbjct: 246 LHEFVDNKGVRCTVRLMNAVMDMYVKCG----SLELANSVFERISNRTAVSWTTMIVGHA 301
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
RL A +LF++MP D+ W ++ Y QNKQ +EA+ F++ +KS +++TM
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVN 361
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
+LSAC+ LGAL++G + Y C ++ +++ VF ++ +N
Sbjct: 362 LLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQN 421
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W S+ LA HG A EA+ F RM ++P+
Sbjct: 422 ALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPD 456
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 54/213 (25%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
V G V K GFS+ VFV A + +S +RRLFDE P R
Sbjct: 141 AAVLGHVQKLGFSADVFVVNAAMHFWSVRGPM----AFARRLFDESPVR----------- 185
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATV 238
D+ SW T+I Y ++ REAL+ F + + G D+VT+
Sbjct: 186 ---------------DVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGA 230
Query: 239 LSACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNL 276
+S CA +G L+LG+ + + C SL + VF ++ +
Sbjct: 231 VSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTA 290
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ W ++ A G +A +FD M +V P
Sbjct: 291 VSWTTMIVGHARLGMMEDARMLFDEMPERDVFP 323
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +++D YA+ + +FN++P + +WT+MI + + EA++ F +
Sbjct: 392 ALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDL 451
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D++T VLSAC H G ++ GR
Sbjct: 452 GLQPDEITFIGVLSACCHAGLVEAGR 477
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 32/204 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFN 190
V + MV Y E+R+ LF EMP R WNT++ YA E LF
Sbjct: 75 VVLWNIMVSGYIEGGDMVEARK----LFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFE 130
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMATVLSACAHLGALD 249
+MP +I SW +I Y+ N F E L +F + +S + T+ TVLSACA LGALD
Sbjct: 131 EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALD 190
Query: 250 LGRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEALA 287
LG+ + +Y S +G +L+ VF + K+L+ WN++ LA
Sbjct: 191 LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 250
Query: 288 IHGFAHEALGMFDRMTYENVRPNG 311
+H +AL +F +M +P+G
Sbjct: 251 MHSRGADALNLFFQMKNAGQKPDG 274
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 51/186 (27%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR---------------------------------LA 185
+R+LFD++P+ A WN+M YA+ A
Sbjct: 4 ARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADLVSA 63
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF+ P D+ W M++ Y + EA F++ D + TVL A
Sbjct: 64 RRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPN----RDVMFWNTVLKGYATN 119
Query: 246 GALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
G ++ G+ F ++ E+N+ WN++ A +G E LG F RM E
Sbjct: 120 GNVEALEGL-------------FEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSE 166
Query: 306 -NVRPN 310
+V PN
Sbjct: 167 SDVPPN 172
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F M D+ SW T+I + + + +AL+ F + K +G
Sbjct: 212 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 271
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D +T +L AC H+G ++ G Y +S+ L+ ++ + + + LA
Sbjct: 272 PDGITFIGILCACTHMGLVEDGFA---YFQSMADDYLIMPQIEH-----YGCMVDMLARA 323
Query: 290 GFAHEALGMFDRMTYE 305
G +A+ +M E
Sbjct: 324 GRLEQAMAFVRKMPVE 339
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-- 181
HG ++ G S + VQ A++ YS F + +RRLFD +WN+MI Y
Sbjct: 289 HGLAFRAGLGSRLNVQNALIHMYSS----FLNVVAARRLFDSGQCLDQFSWNSMIAGYLK 344
Query: 182 ---ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ A+ LF MP D SWTTMI+ QN Q EAL FN + G D+VT+ +V
Sbjct: 345 NGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSV 404
Query: 239 LSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNL 276
+SAC ++ +L+ G+ + Y R LG SL+ VF + E+
Sbjct: 405 ISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGT 464
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
CWN++ LA++G ++L MF M + PN
Sbjct: 465 PCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPN 499
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 112/286 (39%), Gaps = 71/286 (24%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR------FHFID 77
+ + ++ L +CSS + L ++A V + D F A + I F TS FH
Sbjct: 1 MLTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFH--- 57
Query: 78 YTILVFPQMQEPNVFV---------YHAFSSLRHPL-----QAIAFYLYMLRAEVLLT-- 121
+++ + + PN F H L PL A Y + + A T
Sbjct: 58 HSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSAAPDCYTHTILAAACATRR 117
Query: 122 ------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
VH ++GF +++ A++ YS ++R+V FD P +WN
Sbjct: 118 AIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKV----FDAGPVWDAVSWN 173
Query: 176 TMIDAYARLAEL-----LFNKMPAW-------------------------------DIRS 199
T++ AY + ++ +F +MP D+ +
Sbjct: 174 TILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFT 233
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
WT MI+ + +N +F EAL F+ + G D+ M V++ACA L
Sbjct: 234 WTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARL 279
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y + L +F+ M W +I + N ++LD F++ + S T +
Sbjct: 438 SLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTAT 497
Query: 231 -DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE------KNLLCWNSIT 283
+++T VLSAC H G ++ G+ FFKL + N+ + +
Sbjct: 498 PNEITFTGVLSACRHAGLVEEGQH--------------FFKLMQHKYHIIPNIRHYGCMV 543
Query: 284 EALAIHGFAHEALGMFDRM 302
+ L G+ EA + + M
Sbjct: 544 DLLGRAGYVKEAENLIESM 562
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-- 181
HG ++ G S + VQ A++ YS F + +RRLFD +WN+MI Y
Sbjct: 289 HGLAFRAGLGSRLNVQNALIHMYSS----FLNVVAARRLFDSGQCLDQFSWNSMIAGYLK 344
Query: 182 ---ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ A+ LF MP D SWTTMI+ QN Q EAL FN + G D+VT+ +V
Sbjct: 345 NGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSV 404
Query: 239 LSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNL 276
+SAC ++ +L+ G+ + Y R LG SL+ VF + E+
Sbjct: 405 ISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGT 464
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
CWN++ LA++G ++L MF M + PN
Sbjct: 465 PCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPN 499
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 112/286 (39%), Gaps = 71/286 (24%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR------FHFID 77
+ + ++ L +CSS + L ++A V + D F A + I F TS FH
Sbjct: 1 MLTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFH--- 57
Query: 78 YTILVFPQMQEPNVFV---------YHAFSSLRHPL-----QAIAFYLYMLRAEVLLT-- 121
+++ + + PN F H L PL A Y + + A T
Sbjct: 58 HSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSAAPDCYTHTILAAACATRR 117
Query: 122 ------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
VH ++GF +++ A++ YS ++R+V FD P +WN
Sbjct: 118 AIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKV----FDAGPVWDAVSWN 173
Query: 176 TMIDAYARLAEL-----LFNKMPAW-------------------------------DIRS 199
T++ AY + ++ +F +MP D+ +
Sbjct: 174 TILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFT 233
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
WT MI+ + +N +F EAL F+ + G D+ M V++ACA L
Sbjct: 234 WTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARL 279
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y + L +F+ M W +I + N ++LD F++ + S T +
Sbjct: 438 SLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTAT 497
Query: 231 -DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE------KNLLCWNSIT 283
+++T VLSAC H G ++ G+ FFKL + N+ + +
Sbjct: 498 PNEITFTGVLSACRHAGLVEEGQH--------------FFKLMQHKYHIIPNIRHYGCMV 543
Query: 284 EALAIHGFAHEALGMFDRM 302
+ L G+ EA + + M
Sbjct: 544 DLLGRAGYVKEAENLIESM 562
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 159/397 (40%), Gaps = 120/397 (30%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNV 91
L++C +IK+L+ V+A ++KT +LD + + + ++Y + +F + P+
Sbjct: 32 LQQCKTIKDLKQVHAHLLKTRRHLDSTVTENLLESAAIILPATTMEYALSIFDNIDGPDS 91
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQ 126
Y+ AF+ R P +A+AF+ ML V +H Q
Sbjct: 92 SAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEGKQIHAQ 151
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------S 159
+ K GF S V ++ Y+ + +R + +
Sbjct: 152 IVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKSGYYEDT 211
Query: 160 RRLFDEMPE---------------------------------------RKFATWNTMIDA 180
RLF+EM E R ++D
Sbjct: 212 VRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLVTALVDM 271
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
YA+ E+ LF++M D+ +W+ MI+ YSQ ++ +EA+D FN+ + + ++VTM
Sbjct: 272 YAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQMANLDPNEVTM 331
Query: 236 ATVLSACAHLGALDLGRGIQIYCR--------SLGRSLLVFFK--------------LRE 273
+VLS CA LGAL G+ I +Y + +LG +L+ F+ +
Sbjct: 332 VSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGKCGLVDSAIEVFQLMPV 391
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KN+ W ++ + LA +G AL + M NV PN
Sbjct: 392 KNVYSWTALIQGLANNGQGKRALEYYQLMRESNVEPN 428
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 31/198 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
AM+ Y + K ++R LF+ MP R ++WNTMI Y ++ ++ F+ MP
Sbjct: 301 NAMIAGYVQTKKM----DIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQ 356
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D SW +I Y+Q+ + EAL+ F + K+ G ++ T LS CA + AL+LG+ I
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416
Query: 255 Q----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
C S+ + F + EK+++ WN++ A HGF
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFG 476
Query: 293 HEALGMFDRMTYENVRPN 310
+AL +F+ M V+P+
Sbjct: 477 RQALTVFESMKTAGVKPD 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
AM+ Y ++KF ++R LFD+MPER +WN M+ Y R L LF+ MP
Sbjct: 84 NAMISGYLRNSKF----NLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE 139
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG--- 251
D+ SW ++++ Y+QN EA + F+ + + ++ +L+A H G ++
Sbjct: 140 KDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLL 195
Query: 252 ---------------RGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
G + + LG + +F K+ ++ + WN++ A G +A
Sbjct: 196 FESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQAR 255
Query: 297 GMFDRMTYENV 307
+FD +V
Sbjct: 256 RLFDESPTRDV 266
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 27/164 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD+MP R +WNTMI YA+ L LF++ P D+ +WT M++ Y QN
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIYCRS----------- 260
EA F++ + ++V+ +++ +D+ R + + CR+
Sbjct: 283 DEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY 338
Query: 261 -----LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
+ ++ F + +++ + W +I A G EAL MF
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 162 LFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
+F+ MP R ++N MI Y R LA LF++MP D+ SW M+T Y +N + +A
Sbjct: 71 VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDA 130
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276
F+ + D V+ ++LS A G +D R VF + EKN
Sbjct: 131 RRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEAR-------------EVFDNMPEKNS 173
Query: 277 LCWNSITEALAIHGFAHEALGMFD 300
+ WN + A +G EA +F+
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFE 197
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 30/133 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HGQ K G+ + FV A++ Y E+ F+ + E+
Sbjct: 412 LGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDT----FEGIEEK--------- 458
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
D+ SW TM+ Y+++ R+AL F K +G D++TM V
Sbjct: 459 -----------------DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGV 501
Query: 239 LSACAHLGALDLG 251
LSAC+H G LD G
Sbjct: 502 LSACSHTGLLDRG 514
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN I + R +FN MP S+ MI+ Y +N +F A + F++ +
Sbjct: 52 WNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL 111
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
S V + + C LG + +F + EK+++ WNS+ A
Sbjct: 112 FSWNVMLTGYVRNC-----------------RLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 289 HGFAHEALGMFDRMTYEN 306
+G+ EA +FD M +N
Sbjct: 155 NGYVDEAREVFDNMPEKN 172
>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 34/201 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
AM+ Y+Y+N+ E+ + LF MPER FA+WNTMI + R E+ LF++MP
Sbjct: 237 NAMITGYTYNNRIDEADQ----LFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQ 292
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV-TMATVLSACAHLGALDLGRG 253
++ SWT MIT Y +NK+ EAL F+K + G V T ++LSAC+ L L G+
Sbjct: 293 KNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQ 352
Query: 254 I-QIYCRSLGR-----------------SLLVFFKLREKNLLC------WNSITEALAIH 289
I Q+ +S+ + L+ K+ + L+C WNS+ A H
Sbjct: 353 IHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHH 412
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G EA+ M+D+M +P+
Sbjct: 413 GHGKEAIEMYDQMRKHGFKPS 433
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 157 RVSRRLFDEMPERK-FATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
R +R LFD + RK TW M+ Y R +AE LF +MP +I SW TMI Y+Q+
Sbjct: 94 REARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQS 153
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270
+ +AL+ F++ + T V+ T++ A G +D ++ +F +
Sbjct: 154 GRIDKALELFDEMPERNT----VSWNTMIKALVQRGRID-------------EAMNLFER 196
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ K+++ W ++ + LA +G EA +FD M N+
Sbjct: 197 MPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNI 233
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 26/172 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V TAMV Y S + V+ LF EMPER +WNTMID YA+ + LF+
Sbjct: 109 VVTWTAMVSGYLRSKQL----SVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFD 164
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+MP + SW TMI + Q + EA++ F + D ++ ++ A G +D
Sbjct: 165 EMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIK----DVISWTAMVDGLAKNGKVDE 220
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
R + F + E+N++ WN++ + EA +F M
Sbjct: 221 ARRL-------------FDCMPERNIISWNAMITGYTYNNRIDEADQLFQVM 259
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 23/155 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQ 212
+R+LFD +PER TW +I Y +L + LF+++ + ++ +WT M++ Y ++KQ
Sbjct: 65 ARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGYLRSKQ 124
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
A F + + V+ T++ A G +D ++L +F ++
Sbjct: 125 LSVAETLFQEMPERNI----VSWNTMIDGYAQSGRID-------------KALELFDEMP 167
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
E+N + WN++ +AL G EA+ +F+RM ++V
Sbjct: 168 ERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDV 202
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 175 NTMIDAYARLAELLFNK-------MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+ +I+ Y++ EL+ + + D+ SW +MI Y+ + +EA++ +++ +K G
Sbjct: 370 SALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHG 429
Query: 228 TGSDQVTMATVLSACAHLGALDLG 251
+VT +L AC+H G ++ G
Sbjct: 430 FKPSEVTYLNLLFACSHAGLVEKG 453
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 167/369 (45%), Gaps = 71/369 (19%)
Query: 9 IITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKT---NANLDCFLAKQF 65
++T F F + + ++ +++C ++KE++ ++ I+K+ + +L +
Sbjct: 1 MVTIFDIKVFGEPKNLTLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRL 60
Query: 66 ISFCT-SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHP------LQAIAFYLYML 114
+ FC+ S + +Y VF ++ P + VY+ ++ + +A+ Y ML
Sbjct: 61 LYFCSFSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQML 120
Query: 115 RAEVL---LT-------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
++ LT +H V K GF + VFV +++ +
Sbjct: 121 NKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMN---- 176
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
F + +R++FDEM R +WN+M+ Y R E+ LF KM +I +W ++IT
Sbjct: 177 FGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGL 236
Query: 208 SQNKQFREALDAFNKTK-KSGTG---SDQVTMATVLSACAHLGALDLGRGIQIY------ 257
Q +E+L+ F++ + SG D++T+A+VLSACA LG++D G+ + Y
Sbjct: 237 VQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDI 296
Query: 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
C + +++ +F + EK+ W ++ A+HGF +A F
Sbjct: 297 ECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLE 356
Query: 302 MTYENVRPN 310
M V+PN
Sbjct: 357 MEKAGVKPN 365
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++ Y + ++ +FN MP D +WT MI+ ++ + ++A D F + +K+G
Sbjct: 305 ALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKP 364
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT +LSAC+H G ++ GR
Sbjct: 365 NHVTFVGLLSACSHSGLVEQGR 386
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 32/224 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G S V V TA++ YS S R +R +FD + ++ TW
Sbjct: 73 SEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHL----RKARLVFDYIEDKNSVTW 128
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F+KMP D+ SWT MIT + + EAL F + + SG
Sbjct: 129 NTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVN 188
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLV 267
D V + + ++AC +LGAL G I +YCR + + V
Sbjct: 189 PDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQV 248
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F K+ ++ ++ WNS+ A +G A+E+L F +M E P+G
Sbjct: 249 FDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDG 292
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 230 NSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFT 289
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 290 PDGVTFTGALTACSHVGLVEEG 311
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 37/221 (16%)
Query: 123 VHGQVWKN--GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK-FATWNTMID 179
+H QV+KN S + +++A+VD Y+ ++ R+F M K A W++M+
Sbjct: 234 IHAQVYKNLRSIDSNILLKSAIVDMYAKCGLI----NIAERVFSTMGTSKSAAAWSSMVC 289
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
YAR E+ LFN M D+ SWT MI+ YSQ Q EAL+ F + + G D+VT
Sbjct: 290 GYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVT 349
Query: 235 MATVLSACAHLGALDLGRGI---------------------QIY--CRSLGRSLLVFFKL 271
+ VLSACA LGA DLG+ + +Y C S+ +L +F ++
Sbjct: 350 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409
Query: 272 RE--KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ K +NS+ LA HG A+ +F + ++P+
Sbjct: 410 GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPD 450
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 62/266 (23%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT--SRFHFIDYTILVFPQMQEPNV 91
L+ C S K+ ++A + + F + ISF + +D++ L+F Q+ PN+
Sbjct: 16 LESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNL 75
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEV----------LLTT------------VHG 125
F+++ +S +P +AI Y+ M+ + LL + VH
Sbjct: 76 FMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHS 135
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ K+GF S +FV+ A++ YS F + ++R LFDE R
Sbjct: 136 HIIKHGFESDLFVRNALIHLYS----VFGNLNLARTLFDESLVR---------------- 175
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
D+ S+ TMI Y++ Q AL F + + SG D+ T + S C+ L
Sbjct: 176 ----------DLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVL 225
Query: 246 GALDLGRGI--QIY--CRSLGRSLLV 267
++G+ I Q+Y RS+ ++L+
Sbjct: 226 NEPNVGKQIHAQVYKNLRSIDSNILL 251
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS + ++R V FD M ++ TW
Sbjct: 88 SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCV----FDYMEDKNSVTW 143
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F+KMP D+ SWT MI + EAL F + + SG
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVK 203
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLV 267
D V + L+AC +LGAL G I +YCR + + V
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F K+ ++ ++ WNS+ A +G AHE+L F +M E +P+
Sbjct: 264 FDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPD 306
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++
Sbjct: 245 NSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFK 304
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 305 PDAVTFTGALTACSHVGLVEEG 326
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + +L+ F+ MP D+ +W +IT Y+QN EA+ FN +++G
Sbjct: 268 SALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH 327
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D+VTM VLSAC+ +GALDLG+ ++ + C SL ++ V
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRV 387
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN--VRPN 310
F + KN + WN++ ALA HG A EAL +F RM+ +N V+PN
Sbjct: 388 FESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPN 432
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 130/325 (40%), Gaps = 83/325 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF- 92
+K+C S L+ ++A ++ + FL + I + Y LVF Q+ +PN++
Sbjct: 40 IKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLKD-----LAYASLVFNQLTKPNIYA 94
Query: 93 --------------------VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ-----V 127
+Y+ SL + + + VHG+ V
Sbjct: 95 FNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLV 154
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
+K G +V +++ Y+ + +R++FDEM +R +WN+MI Y+++
Sbjct: 155 FKAGLDGDEYVNHSLITMYARCGEM----GFARKVFDEMGDRDLVSWNSMISGYSKMG-- 208
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
F K EA+ F + ++ G D++T+ +VL AC LG
Sbjct: 209 -FTK-----------------------EAIGLFMEMREEGFEPDEMTLVSVLGACGDLGD 244
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L LGR ++ + C L + VF + K+++ WN+I
Sbjct: 245 LGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITG 304
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
A +G ++EA+ +F+ M P+
Sbjct: 305 YAQNGASNEAIVLFNGMREAGPHPD 329
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGT 228
+ +ID YA+ L +F MP + SW MI++ + + Q +EAL F + +K +GT
Sbjct: 369 SALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGT 428
Query: 229 -GSDQVTMATVLSACAHLGALDLGR 252
+ +T VLSAC H G +D GR
Sbjct: 429 VQPNDITFIGVLSACVHAGLVDEGR 453
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 151/373 (40%), Gaps = 100/373 (26%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
L+KC S+ +L+ +++ +K + D + I+FC + ++Y VF + P++F
Sbjct: 14 LEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMF 73
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVL----------------LTTVHGQ-----V 127
+++ +S + HP ++ YL ML + + + HG+
Sbjct: 74 IWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHA 133
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL--- 184
K+GF S +FVQ A + +S ++ ++FD + TWN M+ Y R+
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCGIV----DLAHKVFDMGDACEVVTWNIMLSGYNRVKQF 189
Query: 185 ---------------------------------------------AELLFNKMPAWDIRS 199
A+ +F+ M D+ S
Sbjct: 190 KISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVS 249
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI--- 256
WT MI Y + F AL F + + S D+ TM ++L ACA LGAL+LG ++
Sbjct: 250 WTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCID 309
Query: 257 -------------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
C ++ ++ VF ++ +K+ W ++ LAI+G EAL
Sbjct: 310 KNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALA 369
Query: 298 MFDRMTYENVRPN 310
MF M +V P+
Sbjct: 370 MFSNMIEASVTPD 382
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y R A+ +F +M D +WTTMI + N EAL F+ ++
Sbjct: 321 NALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVT 380
Query: 230 SDQVTMATVLSAC 242
D++T VL AC
Sbjct: 381 PDEITYIGVLCAC 393
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
VF TA++ ++ +++ LFD MPE+ + M+ YA+ EL LF+
Sbjct: 93 VFFWTAIIHGHALRGDVVSAQQ----LFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFD 148
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
M D W MI Y+QN EAL F + K+ ++VT+ +VLSAC LGAL+
Sbjct: 149 GMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALES 208
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
GR + Y C SL + LVF K+ +K+++ WNS+ A+
Sbjct: 209 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 268
Query: 289 HGFAHEALGMFDRMTYENVRP 309
HGF+ EAL +F M + P
Sbjct: 269 HGFSQEALQLFKSMCRMGLHP 289
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 60/229 (26%)
Query: 48 ATIVKTNANLDCFLAKQFISF-----CTSRFHFIDYTILVFPQMQEPNVFVYH----AFS 98
+V D K +S C ++ +D ++F M+E + ++ ++
Sbjct: 107 GDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYT 166
Query: 99 SLRHPLQAIAFYLYMLRA-----EVLLTTV----------------HGQVWKNGFSSPVF 137
P +A+ + ML+A EV + +V H + NG V
Sbjct: 167 QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVH 226
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
V TA+VD YS ++R V FD++ ++ WN+MI YA
Sbjct: 227 VGTALVDMYSKCGSLEDARLV----FDKIDDKDVVAWNSMIVGYA--------------- 267
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+ +SQ EAL F + G +T +LSAC H G
Sbjct: 268 ------MHGFSQ-----EALQLFKSMCRMGLHPTNITFIGILSACGHSG 305
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 22/136 (16%)
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
+YA L L LF + + WT +I ++ A F+ + V+
Sbjct: 71 SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSL----VS 126
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+ +L+ A G LD R ++F + E++ +CWN + + +G +E
Sbjct: 127 LTAMLTCYAKHGELDAAR-------------VLFDGMEERDGVCWNVMIDGYTQNGMPNE 173
Query: 295 ALGMFDRMTYENVRPN 310
AL +F RM +PN
Sbjct: 174 ALVLFRRMLKAKAKPN 189
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V +G VFV T ++ Y S + VSRR+FD+MP R TWN M+ YA
Sbjct: 137 IHALVVTSGIVPDVFVSTELIRVYGESGEL----PVSRRVFDDMPSRSTITWNAMLHQYA 192
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK---TKKSGTGSDQVT 234
R ++ +F MP D+ SW T++ Y + REAL F + + T
Sbjct: 193 RHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPT 252
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL- 271
M+T+L ACA G L+ G + Y C S+ +L VF K
Sbjct: 253 MSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAP 312
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R+K+L W ++ LA+HG +AL MFD M + P+
Sbjct: 313 RKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPD 351
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 177 MIDAYARLAEL-----LFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y + + +F K P D+ SWTT+I + + + +AL F+ + +G
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 231 DQVTMATVLSACAHLGALDLGRG 253
D VT+ VL+ACAH G +D G G
Sbjct: 351 DDVTLVGVLNACAHGGLVDEGLG 373
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ AYA L A LF++MP + T M ++ + Q +A+ F G
Sbjct: 50 ALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFP 109
Query: 231 DQVTMATVLSACAHLG-------------ALDLGRG-----------IQIYCRS--LGRS 264
D V +A L AC G AL + G I++Y S L S
Sbjct: 110 DNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVS 169
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
VF + ++ + WN++ A HG A MF M +V
Sbjct: 170 RRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDV 212
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 35/217 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V K+GFS+ VF+Q ++D Y+ + R+ LFD+MP+R TWN+++
Sbjct: 42 VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQ----LFDKMPQRNVFTWNSVVTGLT 97
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+L A+ LF MP D +W +M++ ++Q+ + EAL F K G ++ T A+
Sbjct: 98 KLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFAS 157
Query: 238 VLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLRE 273
LSAC+ L D+ RG+QI+ C ++ + VF ++ +
Sbjct: 158 GLSACSGLN--DMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGD 215
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ WNS+ +G A EAL +F M V P+
Sbjct: 216 RNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPD 252
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 141/342 (41%), Gaps = 67/342 (19%)
Query: 31 ANQLKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
A+ L CS + ++ +++ I K+ D ++ + S+ ++ VF +M
Sbjct: 156 ASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDM-YSKCGNVNDAQQVFDEMG 214
Query: 88 EPNVFVYHAFSSLRH----PLQAIAFYLYMLRA-----EVLLTTV--------------- 123
+ NV +++ + ++A+ + ML + EV L +V
Sbjct: 215 DRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQE 274
Query: 124 -HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H +V K + + + + A VD Y+ ++ E+R + FD MP R +M+ Y
Sbjct: 275 VHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFI----FDSMPIRNVIAETSMVSGY 330
Query: 182 A-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A + A L+F KM ++ SW +I Y+QN + EAL F K+ T A
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFA 390
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------------CRSLGRSLLVF 268
+L ACA L L LG ++ C + LVF
Sbjct: 391 NILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVF 450
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ E++ + WN++ A +G+ +EAL +F M +P+
Sbjct: 451 RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPD 492
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 163 FDEMPERKFATWNTMIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F E N++ID Y + L+F KM D SW MI ++QN EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLL 277
+ F + SG D +TM VLSAC H G ++ GR Y S+ R V LR+
Sbjct: 479 ELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRH---YFSSMTRDFGV-APLRDH--- 531
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + + L GF EA + + M V+P+
Sbjct: 532 -YTCMVDLLGRAGFLEEAKSIIEEMP---VQPD 560
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V +G VFV T ++ Y S + VSRR+FD+MP R TWN M+ YA
Sbjct: 137 IHALVVTSGIVPDVFVSTELIRVYGESGEL----PVSRRVFDDMPSRSTITWNAMLHQYA 192
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK---TKKSGTGSDQVT 234
R ++ +F MP D+ SW T++ Y + REAL F + + T
Sbjct: 193 RHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPT 252
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL- 271
M+T+L ACA G L+ G + Y C S+ +L VF K
Sbjct: 253 MSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAP 312
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R+K+L W ++ LA+HG +AL MFD M + P+
Sbjct: 313 RKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPD 351
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 177 MIDAYARLAEL-----LFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y + + +F K P D+ SWTT+I + + + +AL F+ + +G
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 231 DQVTMATVLSACAHLGALDLGRG 253
D VT+ VL+ACAH G +D G G
Sbjct: 351 DDVTLVGVLNACAHGGLVDEGLG 373
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ AYA L A LF++MP + T M ++ + Q +A+ F G
Sbjct: 50 ALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFP 109
Query: 231 DQVTMATVLSACAHLG-------------ALDLGRG-----------IQIYCRS--LGRS 264
D V +A L AC G AL + G I++Y S L S
Sbjct: 110 DNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVS 169
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
VF + ++ + WN++ A HG A MF M +V
Sbjct: 170 RRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDV 212
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 57/249 (22%)
Query: 119 LLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNK---------FFESRR----------- 157
L ++H + ++GF++ +FV+TA+V+ Y+ + F E+ R
Sbjct: 65 LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124
Query: 158 ---------VSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTM 203
+R++FD M R +WNTMI YA +A +F+ D SW++M
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSM 184
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------ 257
I++Y++ + +EAL+ + + + +G D ++M +VLSAC+ +GAL +G + +
Sbjct: 185 ISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRV 244
Query: 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
C + SL VF + K++L W+S+ LA HG H+AL +F
Sbjct: 245 EVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSE 304
Query: 302 MTYENVRPN 310
M + ++PN
Sbjct: 305 MISQGLQPN 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
++F ES RV E ++D YA+ ++ +F+ MP D+ +W++MI
Sbjct: 236 HRFVESNRV---------EVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMI 286
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + +AL F++ G +++T VL AC H+G ++ G+
Sbjct: 287 IGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGK 334
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 53/343 (15%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
++F+++ ++ R + + L+ C + ++ ++A I++T + D F+ + I C+
Sbjct: 13 STFRRDPDANTLRLARRKTLISLLRNCKNNAQVPSIHAKIIRTFHDQDAFVVFELIRVCS 72
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVL-----LT 121
+ IDY VF + PNV++Y A F S ++ Y M+ + VL +T
Sbjct: 73 T-LDSIDYAYDVFRYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVIT 131
Query: 122 TV------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
+V H QV K GF S V +++ Y S + ++++V FDEMP+R
Sbjct: 132 SVLKACGLDECREIHSQVLKLGFGSSRSVGLKLMEIYGKSGELADAKKV----FDEMPDR 187
Query: 170 KFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
MI+ Y+ + A LF + D WT MI +N++ +AL+ F + +
Sbjct: 188 DQVVATVMINCYSECGCIKEALELFQDVKIKDTVCWTAMIDGLVRNREMNKALELFREMQ 247
Query: 225 --------------KSGTGSDQVTMATVLSACAHLG-ALDLGRGIQIY--CRSLGRSLLV 267
SG G + +G AL I +Y C + + V
Sbjct: 248 LSVFYLPARIWVRWSSGAGVHSFVENQKMELSNFVGNAL-----INMYSRCGDINVAKRV 302
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +R+K+++ +N++ LA+HG + EA+ +F M RPN
Sbjct: 303 FKGMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFRPN 345
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R ++ +F M D+ S+ TMI+ + + EA++ F G
Sbjct: 284 NALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFR 343
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+QVT+ +L+AC+H G LD+G
Sbjct: 344 PNQVTLVALLNACSHGGLLDIG 365
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 65/246 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H +V K G +VQ A+V Y + E+R+ FDEMP + +WN ++ A+
Sbjct: 176 LHCRVLKLGCGQDRYVQNALVSMYGQFGRLGEARKA----FDEMPVKNAVSWNALVVAHG 231
Query: 183 -------------------------------RLAEL-----LFNKMPAWDIRSWTTMITS 206
RL +L +F MP D+ SW ++I+
Sbjct: 232 VSGDLQGAERVSQATPERNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISG 291
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS------ 260
Y++ + ALD F K+ ++T+ + L ACA +G L+LGRGI Y +S
Sbjct: 292 YAKLGMYSRALDVFRDMWKNDIEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEAD 351
Query: 261 --LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
+G +L+ VF + K++ CWN++ L++HG +H+AL +FD M
Sbjct: 352 GYVGNALVDMYAKCGNLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLM-- 409
Query: 305 ENVRPN 310
N+ P+
Sbjct: 410 -NIEPD 414
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-- 183
+WKN + + + + R + L + E N ++D YA+
Sbjct: 307 DMWKNDIEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCG 366
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
LA +F+ M D+ W TMI S + +AL F+ D VT VL+
Sbjct: 367 NLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLMNIE---PDHVTFLGVLT 423
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
AC+H G L+ GR +Y +S+ + ++ + I L +G HEA M +
Sbjct: 424 ACSHSGLLNEGR---VYFKSMIEDYKIVPSMKH-----YGCIINMLCRYGKVHEAYQMIN 475
Query: 301 RM 302
M
Sbjct: 476 DM 477
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V+K F + V A+VD Y E+R+
Sbjct: 225 VHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARK------------------------- 259
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+++P DI SWT++I+ Q KQ +++L+ F + SG D++ + +VLSAC
Sbjct: 260 -----LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSAC 314
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LGALD GR +Q Y C + +L +F + +N+ WN
Sbjct: 315 ASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWN 374
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ LA+HG HEAL F+ M +RPN
Sbjct: 375 ALLGGLAMHGHGHEALKHFELMIGAGIRPN 404
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 130/335 (38%), Gaps = 82/335 (24%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVF 83
F+++ ++ N + +C +I+ L+ ++A ++ + D F+ + F F+DY
Sbjct: 3 FLKLRLL-NSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFL 61
Query: 84 PQMQE-----PNVFVYHAFSSLRHPLQAIAFY-----------LYMLRAEVLLTT----- 122
Q P + A++S P A Y +Y + T
Sbjct: 62 NQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121
Query: 123 -----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VHG K GF ++VQ +++ YS K+ + RV FDEM R
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRV----FDEMLVR-------- 169
Query: 178 IDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
D+ SWT +I+ Y + F EA++ F K + T +
Sbjct: 170 ------------------DVVSWTGLISGYVRTGLFDEAINLFLKMDVV---PNVATFVS 208
Query: 238 VLSACAHLGALDLGRGIQ--IYCRSLGRSLLV--------------------FFKLREKN 275
VL AC +G L +G+G+ +Y R+ G L+V F +L +++
Sbjct: 209 VLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRD 268
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W SI L ++L +F M V P+
Sbjct: 269 IVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPD 303
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 161 RLFDEMPERKFATWN-----TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
R E ER+ W+ ++D YA+ +A +FN +P +I +W ++ + +
Sbjct: 324 RWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMH 383
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
EAL F +G ++VT +L+AC H G + GR
Sbjct: 384 GHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGR 425
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 77/318 (24%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSS 99
+K L+ ++A I+ T L + +SF + I YT +F + +P+ F++H+ +
Sbjct: 32 LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91
Query: 100 LRH----PLQAIAFYLYMLRAEV---------------------LLTTVHGQVWKNGFSS 134
L P +++ Y ML A + + T+H V+ G+
Sbjct: 92 LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA 194
+VQ A+V Y+ S ++R++FD+MPE+ WN
Sbjct: 152 DAYVQAALVSFYAKSGHVM----IARKVFDKMPEKTVVAWN------------------- 188
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
+MI+ Y QN +EA++ F + G D T ++LSACA +GA+ LG +
Sbjct: 189 -------SMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWV 241
Query: 255 QIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
Y C ++ ++ VF + EKN++ W ++ +HG
Sbjct: 242 HEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHG 301
Query: 293 HEALGMFDRMTYENVRPN 310
+A+ +F+ M+++ RPN
Sbjct: 302 SQAIELFNEMSFDGPRPN 319
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +N F V + TA+++ YS ++R V FD M E+
Sbjct: 241 VHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREV----FDSMEEK------------- 283
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+I +WT MI+ Y + +A++ FN+ G + VT VLSAC
Sbjct: 284 -------------NIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330
Query: 243 AHLGALDLGRGI 254
AH G +D GR I
Sbjct: 331 AHAGLVDEGRQI 342
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 31/198 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
AM+ Y + K ++R LF+ MP R ++WNTMI Y ++ ++ F+ MP
Sbjct: 301 NAMIAGYVQTKKM----DIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQ 356
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D SW +I Y+Q+ + EAL+ F + K+ G ++ T LS CA + AL+LG+ I
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416
Query: 255 Q----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
C S+ + F + EK+++ WN++ A HGF
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFG 476
Query: 293 HEALGMFDRMTYENVRPN 310
+AL +F+ M V+P+
Sbjct: 477 RQALTVFESMKTAGVKPD 494
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
AM+ Y ++KF ++R LFD+MPER +WN M+ Y R L LF+ MP
Sbjct: 84 NAMISGYLRNSKF----NLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE 139
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG--- 251
D+ SW ++++ Y+QN EA + F+ + + ++ +L+A H G ++
Sbjct: 140 KDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLL 195
Query: 252 ---------------RGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
G + + LG + +F K+ ++ + WN++ A G +A
Sbjct: 196 FESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQAR 255
Query: 297 GMFDRMTYENV 307
+FD +V
Sbjct: 256 RLFDESPTRDV 266
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 27/164 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD+MP R +WNTMI YA+ L LF++ P D+ +WT M++ Y QN
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIYCRS----------- 260
EA F++ + ++V+ +++ +D+ R + + CR+
Sbjct: 283 DEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY 338
Query: 261 -----LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
+ ++ F + +++ + W +I A G EAL MF
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 162 LFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
+F+ MP R ++N MI Y R LA LF++MP D+ SW M+T Y +N + +A
Sbjct: 71 VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDA 130
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276
F+ + D V+ ++LS A G +D R VF + EKN
Sbjct: 131 RRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEAR-------------EVFDNMPEKNS 173
Query: 277 LCWNSITEALAIHGFAHEALGMFD 300
+ WN + A +G EA +F+
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFE 197
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 30/133 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HGQ K G+ + FV A++ Y E+ F+ + E+
Sbjct: 412 LGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDT----FEGIEEK--------- 458
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
D+ SW TM+ Y+++ R+AL F K +G D++TM V
Sbjct: 459 -----------------DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGV 501
Query: 239 LSACAHLGALDLG 251
LSAC+H G LD G
Sbjct: 502 LSACSHTGLLDRG 514
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN I + R +FN MP S+ MI+ Y +N +F A + F++ +
Sbjct: 52 WNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL 111
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
S V + + C LG + +F + EK+++ WNS+ A
Sbjct: 112 FSWNVMLTGYVRNC-----------------RLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 289 HGFAHEALGMFDRMTYEN 306
+G+ EA +FD M +N
Sbjct: 155 NGYVDEAREVFDNMPEKN 172
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 33/211 (15%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K G S +FV AM+ Y+ E+RRV FD ++ +WN MI Y E+
Sbjct: 60 KIGLESNLFVTNAMIRMYANWGLVDEARRV----FDWSLDQDLYSWNIMIGGYVGSGEIG 115
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F++M D+ SWTT+I Y Q F+EALD F++ ++G ++ T+A+ L+ACA
Sbjct: 116 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 175
Query: 244 HLGALDLGRGIQIYC---------RSLGRSLLVFFKLREKNLLC---------------W 279
+L ALD GR I +Y R L L ++ K E + W
Sbjct: 176 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPW 235
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ A+HG + EA+ +F++M E V PN
Sbjct: 236 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPN 266
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 165 EMPERKFATWNTMIDAYARLAELLFN----------KMPAWDIRSWTTMITSYSQNKQFR 214
+M ER A+ ++D YA+ E+ F K+ W W MI Y+ + + +
Sbjct: 196 KMNERLLAS---LLDMYAKCGEIDFAAKVFHDEYGLKLKVW---PWNAMIGGYAMHGKSK 249
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
EA+D F + K ++VT +L+AC+H ++ GRG Y +S+ S
Sbjct: 250 EAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRG---YFKSMASS 296
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V+K F + V A+VD Y E+R+
Sbjct: 225 VHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARK------------------------- 259
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+++P DI SWT++I+ Q KQ +++L+ F + SG D++ + +VLSAC
Sbjct: 260 -----LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSAC 314
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LGALD GR +Q Y C + +L +F + +N+ WN
Sbjct: 315 ASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWN 374
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ LA+HG HEAL F+ M +RPN
Sbjct: 375 ALLGGLAMHGHGHEALKHFELMIGAGIRPN 404
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 130/335 (38%), Gaps = 82/335 (24%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVF 83
F+++ ++ N + +C +I+ L+ ++A ++ + D F+ + F F+DY
Sbjct: 3 FLKLRLL-NSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFL 61
Query: 84 PQMQE-----PNVFVYHAFSSLRHPLQAIAFY-----------LYMLRAEVLLTT----- 122
Q P + A++S P A Y +Y + T
Sbjct: 62 NQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121
Query: 123 -----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VHG K GF ++VQ +++ YS K+ + RV FDEM R
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRV----FDEMLVR-------- 169
Query: 178 IDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
D+ SWT +I+ Y + F EA++ F K + T +
Sbjct: 170 ------------------DVVSWTGLISGYVRTGLFDEAINLFLKMDVV---PNVATFVS 208
Query: 238 VLSACAHLGALDLGRGIQ--IYCRSLGRSLLV--------------------FFKLREKN 275
VL AC +G L +G+G+ +Y R+ G L+V F +L +++
Sbjct: 209 VLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRD 268
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W SI L ++L +F M V P+
Sbjct: 269 IVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPD 303
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 161 RLFDEMPERKFATWN-----TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
R E ER+ W+ ++D YA+ +A +FN +P +I +W ++ + +
Sbjct: 324 RWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMH 383
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
EAL F +G ++VT +L+AC H G + GR
Sbjct: 384 GHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGR 425
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 31/216 (14%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VH + G F+ A++D Y+ K E+ R F+++P + A+WN+M+D +
Sbjct: 389 SVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT----FEQLPCKSAASWNSMLDGF 444
Query: 182 AR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
R A FNK+P DI SW TM+ +Y ++ F E+ + F K + S D+ T+
Sbjct: 445 CRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLI 504
Query: 237 TVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREK 274
++LS+CA +GAL+ G + +Y LG +L+ +F ++ EK
Sbjct: 505 SLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEK 564
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N+ W ++ A A+ G A EA+ ++ M V+P+
Sbjct: 565 NVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPD 600
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 24/247 (9%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYT 79
TS S +R H I + LK CS+I+E ++A ++ N D + Q ++F S + +D
Sbjct: 28 TSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLS-VNNLDCA 86
Query: 80 ILVFPQMQEPNVFVYHAF--SSLRH--PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP 135
+ EP +++ + L+ P + + Y +M+ VLL S+
Sbjct: 87 HQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLD----------ISTF 136
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
F+ A N+ V R+ R + N ++ Y++ +L LF
Sbjct: 137 HFLIHACCKNFDVK----LGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFE 192
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
KM D+ SW TMI+ Y +REALD F++ SG D++TM +++S CA L L++
Sbjct: 193 KMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEM 252
Query: 251 GRGIQIY 257
G+ + +Y
Sbjct: 253 GKRLHLY 259
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 65/249 (26%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L V ++W G + +VD YS K E+ + R DE E W T++
Sbjct: 258 LYIVDNKLWIRGS-----LLNCLVDMYSKCGKMDEAHGLLSRC-DE-SEVDVVLWTTLVS 310
Query: 180 AYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y + A LF+KM + SWTTM++ Y Q + E+L+ F + + D+V
Sbjct: 311 GYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVA 370
Query: 235 MATVLSACAHLGALDLGRGIQI-------------------------------------- 256
+ TVLSAC HL DLGR +
Sbjct: 371 LVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLP 430
Query: 257 -------------YCRSLG--RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
+CRS G ++ F K+ EK+++ WN++ A H +E+ +F +
Sbjct: 431 CKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCK 490
Query: 302 MTYENVRPN 310
M NV+P+
Sbjct: 491 MQSSNVKPD 499
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y + +A +F ++ ++ WT M+ +Y+ Q EA+D + + ++ G D
Sbjct: 541 LIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPD 600
Query: 232 QVTMATVLSACAHLGALDLG 251
VT +L+AC+H G +D G
Sbjct: 601 HVTFIALLAACSHGGLVDEG 620
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 50/252 (19%)
Query: 92 FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
F+ A + L P A++ + + LR +L +H N F ++ A+ D
Sbjct: 65 FLGRAAARLASPRLALSLHSHPLRLGLLPCDLH---IANSFVH-MYAACALPD------- 113
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
++RRLFDE+P +WN ++D YA+ +L +F++MP D+ SW+ MI
Sbjct: 114 ------LARRLFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDG 167
Query: 207 YSQNKQFREALDAFNKTKKSGTG----SDQVTMATVLSACAHLGALDLGRGIQIY----- 257
+ ++REAL F + + TG ++ VTM ++L ACAHLG L GR + Y
Sbjct: 168 CVKCGEYREALALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERG 227
Query: 258 -----------------CRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGM 298
C ++ +L VF + ++L WN++ LA+HG E + +
Sbjct: 228 FLLNLRLATSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVEL 287
Query: 299 FDRMTYENVRPN 310
F M + V P+
Sbjct: 288 FQEMQHSGVVPD 299
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 157 RVSRRLFDEMPERKFAT----WNTMIDAYARLAEL-----LFNKMP--AWDIRSWTTMIT 205
R R++ + ER F +++D YA+ + +F +P + D+ W MI
Sbjct: 214 RRGRQMHRYLQERGFLLNLRLATSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIG 273
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+ + E ++ F + + SG D++T +LSAC H G +D
Sbjct: 274 GLAVHGMGMETVELFQEMQHSGVVPDEITYLGLLSACVHGGLVD 317
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 129/301 (42%), Gaps = 80/301 (26%)
Query: 60 FLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFVY------------------HAFSSL 100
FL + +SF S F DY +F Q+ P +F Y H F +
Sbjct: 23 FLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDM 82
Query: 101 ---RHPLQAIAFYLYMLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
+P ++L+A ++ +H Q+ ++GFSS +VQ+++V+ YS
Sbjct: 83 VGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKC-- 140
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211
E ++R++FDE+ ER W + M++ Y++
Sbjct: 141 --EEITIARKVFDEITERNLVCW--------------------------SAMVSGYARLG 172
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
EAL F + + G D+V++ VLSACA +GALD+G+ + Y
Sbjct: 173 MINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNT 232
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C + ++ +F ++R K+ W+S+ LAIHG A +AL +F RM +P
Sbjct: 233 ALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKP 292
Query: 310 N 310
N
Sbjct: 293 N 293
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS I LE ++A I+++ + ++ ++F S+ I VF ++ E N
Sbjct: 99 LKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNF-YSKCEEITIARKVFDEITERN 157
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ + A S L I L M R ++ +V G S + A+ D + +
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGAL-DIGKWVH 216
Query: 151 KFFESRRVSRRLFDEMPERKFATWNT-MIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ + R + L NT +I+ YA+ A +F++M D ++W++MI
Sbjct: 217 AYIKKRMIHVDL----------ELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMI 266
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + +AL+ F++ +++ + VT +LSACAH G + G+
Sbjct: 267 VGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGK 314
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS ++ ++R V FD M ++ TW
Sbjct: 77 SEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLV----FDYMEDKNSVTW 132
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F+KMP D+ SWT MI + + EAL F + + SG
Sbjct: 133 NTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVK 192
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR----SLGRSL 265
D V + L+AC +LGAL G I +YCR R
Sbjct: 193 PDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFARE- 251
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF K+ ++ ++ WNS+ A +G AHE+L F +M E +P+
Sbjct: 252 -VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPD 295
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 234 NSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFK 293
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 294 PDAVTFTGALTACSHVGLVEEG 315
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 124/276 (44%), Gaps = 44/276 (15%)
Query: 75 FIDYTILVFPQMQEPNVFVYHAFSSLRH------PLQAIAFYLYMLRAEV------LLTT 122
F+ +L F + +P + + FS LR P AF A
Sbjct: 104 FLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAKSATASRSLPAAAAA 163
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
V GF FV+ +++ Y +R+V FDEM E+ +W +++ AY
Sbjct: 164 HAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKV----FDEMVEKDVISWTSIVVAYT 219
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R AE +F + P D+ +WT M+T Y+QN +AL+ F++ + G D+V++
Sbjct: 220 RSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTG 279
Query: 238 VLSACAHLGALD-------------------LGRG-IQIY--CRSLGRSLLVFFKLREKN 275
+SACA LGAL +G G + +Y C + + VF+ ++EKN
Sbjct: 280 AISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKN 339
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE-NVRPN 310
+ ++S+ LA HG A EA+ +F M NV PN
Sbjct: 340 VYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPN 375
>gi|255542098|ref|XP_002512113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549293|gb|EEF50782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 336
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 58/305 (19%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
L+KC S+K+L+ +A + + F + ++FC+ H + + +F +Q+P +
Sbjct: 15 LEKCKSMKQLKQAHAQAITCGLGNNSFTLSRILAFCSDPNHASLSHAWKIFQHIQQPTIC 74
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
+Y+ M++A +L GFS V +++ Y
Sbjct: 75 IYNT----------------MIKALLL----------KGFSVNAVVGNSLILMYCG---- 104
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207
F + R +R +FDE+P +W MI +A++ A L F+ P D MI+ Y
Sbjct: 105 FCNMRAARYVFDEIPGPCVVSWTLMISGFAKVGDIESARLFFDGAPRKDRGICGAMISGY 164
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLV 267
QN F+E L F+ + + D+ ++L ACA LGALD G I Y LG L +
Sbjct: 165 VQNNCFKECLYMFSMIQLTDNVPDEGIFLSILCACAQLGALDTGIWIHRYMDRLGLPLTI 224
Query: 268 ----------------------FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
F ++ +++ +CWN + LA+HG A+ +F +M
Sbjct: 225 RLSTGLIDMYAKCGNVDLAKSLFDEMPQRDTVCWNVMISGLAMHGDGEGAINLFLKMEEA 284
Query: 306 NVRPN 310
+P+
Sbjct: 285 GFKPD 289
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ LA+ LF++MP D W MI+ + + A++ F K +++G D
Sbjct: 230 LIDMYAKCGNVDLAKSLFDEMPQRDTVCWNVMISGLAMHGDGEGAINLFLKMEEAGFKPD 289
Query: 232 QVTMATVLSACAHLG 246
VT +LSAC++ G
Sbjct: 290 DVTFIAILSACSYSG 304
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 132/306 (43%), Gaps = 72/306 (23%)
Query: 66 ISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAE 117
+ FC HF + Y I VF +QEPN+ ++ HA S P+ A+ Y+ M+
Sbjct: 1 LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSP--DPVSALKLYVCMISLG 58
Query: 118 VLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESR 156
+L + +HG V K G+ ++V T+++ Y + + ++
Sbjct: 59 LLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAH 118
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNK 211
+V FD R ++ ++ YA A +F+++P D+ SW MI+ Y +
Sbjct: 119 KV----FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETG 174
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
++EAL+ F + K+ D+ TM TV+SA A G+++LGR + +
Sbjct: 175 NYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVN 234
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTY 304
C + + +F L K+++ WN + I G+ H EAL +F M
Sbjct: 235 ALIDFYSKCGEMETACGLFLGLSYKDVISWN-----ILIGGYTHLNLYKEALLLFQEMLR 289
Query: 305 ENVRPN 310
PN
Sbjct: 290 SGESPN 295
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ E+ LF + D+ SW +I Y+ ++EAL F + +SG
Sbjct: 234 NALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES 293
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 294 PNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAH 353
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A+ A +F RM ++P+
Sbjct: 354 QVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPD 398
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID Y++ ++ +FN M + +W MI ++ + + A D F++ +K+
Sbjct: 338 SLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKP 397
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ +K+ K L + + + L G
Sbjct: 398 DDITFVGLLSACSHAGMLDLGRHIF-------RSMTHNYKITPK-LEHYGCMIDLLGHSG 449
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M MT E P+G
Sbjct: 450 LFKEAEEMISTMTME---PDG 467
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 36/209 (17%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + +NG V + A++D Y +R+LFD M + +W TM
Sbjct: 203 HCYIEENGLKLTVPLANALMDMYMKCGNL----ESARKLFDSMTNKTMVSWTTM------ 252
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF++MP D+ W MI Y + +EAL FN+ + D+VTM + LSAC+
Sbjct: 253 ----LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACS 308
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
LGALD+G I Y C + +++ VF +L +N L W +
Sbjct: 309 QLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTA 368
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
I LA+HG AH A+ F M +V P+
Sbjct: 369 IISGLALHGNAHGAIAYFSEMIDNSVMPD 397
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 121/323 (37%), Gaps = 105/323 (32%)
Query: 58 DCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLY 112
D F + + I+FC S + +DY + + PN F ++ F +P +A+ Y
Sbjct: 9 DGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKR 68
Query: 113 MLRAEV----------------------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+L+ + + + + G V GF S +FV A++
Sbjct: 69 VLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCG 128
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210
+R++FD+ R +WN+MI+ Y R R W
Sbjct: 129 DL----DGARKMFDKSCVRDLVSWNSMINGYVR--------------RGWA--------- 161
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSL----- 265
EAL+ + + K G D+VTM V+S+CA L LDLGR Y G L
Sbjct: 162 ---YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 218
Query: 266 ---------------------------------LVFFKLREKNLLCWNSITEALAIHGFA 292
++F ++ +K+++ WN++ I G+
Sbjct: 219 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAM-----IGGYV 273
Query: 293 H-----EALGMFDRMTYENVRPN 310
H EAL +F+ M N+ P+
Sbjct: 274 HANRGKEALALFNEMQAMNINPD 296
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 45/260 (17%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELEC------VYATIVKTNANLDCFL-------AKQF 65
P V+ I + QL+ +E C + T+ NA +D ++ A++
Sbjct: 178 PDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 237
Query: 66 ISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHG 125
T++ + +T ++F +M + +V ++A I Y++ R + L +
Sbjct: 238 FDSMTNK-TMVSWTTMLFDEMPDKDVVPWNAM---------IGGYVHANRGKEALALFNE 287
Query: 126 QVWKNGFSSPVFV--------QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
N V + Q +D + + + E +S + A +
Sbjct: 288 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNV---------ALGTAL 338
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
ID YA+ ++ +F ++P + +WT +I+ + + A+ F++ + D+
Sbjct: 339 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 398
Query: 233 VTMATVLSACAHLGALDLGR 252
VT +LSAC H G ++ GR
Sbjct: 399 VTFLGLLSACCHGGLVEEGR 418
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 31/211 (14%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V +NG + + A++D +S E+RR+ FD + +R +W TMI YAR
Sbjct: 283 VKENGLRMTIPLVNALMDMFSKCGDIHEARRI----FDNLEKRTIVSWTTMISGYARCGL 338
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L LF+ M D+ W MI Q K+ ++AL F + + S T D++TM LSA
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C+ LGALD+G I Y C ++ +L VF ++ +N L +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY 458
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+I LA+HG A A+ F+ M + P+
Sbjct: 459 TAIIGGLALHGDASTAISYFNEMIDAGIAPD 489
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 133/321 (41%), Gaps = 51/321 (15%)
Query: 23 SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTIL 81
SF+ + + + L+KC + L+ + A ++ LD F + + I+FC S ++DY++
Sbjct: 49 SFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVK 108
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHG--QVWKNGFSSP 135
+ ++ PN+F ++ FS +P ++ Y MLR HG + + F+ P
Sbjct: 109 ILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLR--------HGCCESRPDHFTYP 160
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V + S + RL E N I +A ++ +F+
Sbjct: 161 VLFKVCADLRLSSLGHMILGHVLKLRL-----ELVSHVHNASIHMFASCGDMENARKVFD 215
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+ P D+ SW +I Y + + +A+ + + G D VTM ++S+C+ LG DL
Sbjct: 216 ESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLG--DL 273
Query: 251 GRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
RG + Y C + + +F L ++ ++ W ++
Sbjct: 274 NRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGY 333
Query: 287 AIHGFAHEALGMFDRMTYENV 307
A G + +FD M ++V
Sbjct: 334 ARCGLLDVSRKLFDDMEEKDV 354
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/256 (17%), Positives = 102/256 (39%), Gaps = 46/256 (17%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT--- 70
K+N ++ + + + + KC I E ++ + K + +S+ T
Sbjct: 284 KENGLRMTIPLV--NALMDMFSKCGDIHEARRIFDNLEK----------RTIVSWTTMIS 331
Query: 71 --SRFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEVL---LT 121
+R +D + +F M+E +V +++A + A+A + M + +T
Sbjct: 332 GYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEIT 391
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H Q +D + +++ E +S + A +++D Y
Sbjct: 392 MIH--------CLSACSQLGALDVGIWIHRYIEKYSLSLNV---------ALGTSLVDMY 434
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ + +F+ + + ++T +I + + A+ FN+ +G D++T
Sbjct: 435 AKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFI 494
Query: 237 TVLSACAHLGALDLGR 252
+LSAC H G + GR
Sbjct: 495 GLLSACCHGGMIQTGR 510
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R TW+TMID YA+L A+ LF++MP
Sbjct: 260 NSMIDGYVKHGRIEDAKY----LFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPH 315
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ S+ +MI Y QN+ EAL+ F + K+S D+ T+ VLSA A LG L
Sbjct: 316 RDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 375
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LAIHG
Sbjct: 376 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGL 435
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 436 GESAFDMLLQIERRSIKPD 454
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N+MID Y
Sbjct: 147 IHGFLKKTGLWSDLFLQNCLIGLYLKCGWL----GFARQIFDRMPQRDSVSYNSMIDGYV 202
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q + +D +K D ++
Sbjct: 203 KCGSTESARELFDLMPEEMKNLISWNSMISGYAQTS---DGVDIASKLFSEMPDKDLISW 259
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ G ++ + +F + ++++ W+++ + A GF H+A
Sbjct: 260 NSMIDGYVKHGRIEDAK-------------YLFDVMPRRDVVTWSTMIDGYAKLGFVHQA 306
Query: 296 LGMFDRMTYENV 307
+FD+M + +V
Sbjct: 307 KTLFDQMPHRDV 318
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 36/214 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT---WNTMIDAYARLA 185
K GF FV+TA++D ++ + ++F+++ K+ + WN MI AYAR+
Sbjct: 281 KVGFRPNYFVKTALLDMHAKCGNL----EAAHKIFEQLGVYKYRSSVPWNAMISAYARVG 336
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTGSDQVTMATV 238
+L LF+KMP D SW +MI Y+QN + +A+ F + + + D+VTM +V
Sbjct: 337 DLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSV 396
Query: 239 LSACAHLGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKNL 276
SAC HLG L LG I +Y C S+ ++L+F ++ ++L
Sbjct: 397 FSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDL 456
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +N++ A HG E++ + +M + + P+
Sbjct: 457 VSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 490
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 123/329 (37%), Gaps = 97/329 (29%)
Query: 65 FISFCTSRFHFIDYTILVFPQMQEPNVFVY--------------HAFSSL-RHPLQAI-- 107
++ CT YT +F P+V V+ F SL +H LQ
Sbjct: 26 LLTQCTRFLAPSSYTCHIFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDI 85
Query: 108 ----AFYLYMLRA---EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160
+FY M+++ E +L H V K+G+ +V+ ++ Y+ + +R
Sbjct: 86 KPNASFYSVMMKSAGSESMLFLAH--VLKSGYDRDHYVRNGILGIYAK----YGPIEFAR 139
Query: 161 RLFDEMPERKFATWNTMIDAY--------------------------------------- 181
+LFDEMP+R A WN MI Y
Sbjct: 140 KLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKG 199
Query: 182 -ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVL 239
+ A + F+KMP + SW M++ Y+Q E + FN G D+ T ATV+
Sbjct: 200 NLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVI 259
Query: 240 SACAHLGALDLGRGI-----------------------QIYCRSLGRSLLVFFKL---RE 273
S+C+ LG L I C +L + +F +L +
Sbjct: 260 SSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKY 319
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM 302
++ + WN++ A A G A +FD+M
Sbjct: 320 RSSVPWNAMISAYARVGDLPSAKHLFDKM 348
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+ +N++I+ Y+R A L+F +M D+ S+ T+I+ ++++ E+++ +K K+
Sbjct: 425 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 484
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR 252
G D++T +L+AC+H G LD G+
Sbjct: 485 DGIEPDRITYIAILTACSHAGLLDEGQ 511
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HGQ+ K GF + VFV +++VD Y+ V+ ++FDE+ ER +NTMI
Sbjct: 160 IHGQIVKFGFGAYVFVGSSLVDMYAKMGLV----SVASQVFDEVQERNVVMYNTMITGLL 215
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R + LF+ M D SWTTMIT QN EA+D F ++ G DQ T +
Sbjct: 216 RSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGS 275
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+AC L AL G+ I CRS+ + VF ++ KN
Sbjct: 276 VLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKN 335
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ +GF+ EA+ +F M + P+
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPD 370
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 56/221 (25%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LRA +H + ++G++ VFV +A+VD Y + R V
Sbjct: 283 LRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYC------KCRSV--------------- 321
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
R AE +F +M ++ SWT M+ Y QN EA+ F +++G D
Sbjct: 322 ---------RYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-------------------- 273
T+ +V+S+CA+L +L+ G Q +C++L L+ F +
Sbjct: 373 TLGSVISSCANLASLE--EGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFD 430
Query: 274 ----KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + W ++ A G A+E + +F+RM + ++P+
Sbjct: 431 EMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPD 471
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R +FD+MP+ +WNTM+ AY++ +L +F+ MP D SW ++I+ Y
Sbjct: 59 ARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSV 118
Query: 214 REALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
EA+ +N K G +++T +T+L + G +DLGR I G VF
Sbjct: 119 VEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVG-- 176
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+S+ + A G A +FD + NV
Sbjct: 177 -------SSLVDMYAKMGLVSVASQVFDEVQERNV 204
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 18/220 (8%)
Query: 39 SIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVFVYHAF 97
++KE + ++ I+++ N + F+ + +C R + Y VF +M NV + A
Sbjct: 285 ALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRS--VRYAEAVFKRMANKNVVSWTAM 342
Query: 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
+ + E + V + +NG F +++ + + E +
Sbjct: 343 --------LVGYGQNGFSEEAV--RVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ 392
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+ N +I Y + + LF++M D SWT +++ Y+Q +
Sbjct: 393 FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGK 452
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
E +D F + G D VT VLSAC+ G ++ G+
Sbjct: 453 ANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 143/330 (43%), Gaps = 64/330 (19%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF-- 97
IK + +A IV + FLA + ++ S +D ++VF ++ P+ +Y++
Sbjct: 93 IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGD-LDSAVVVFDRIDNPSSLLYNSIIR 151
Query: 98 SSLRHP--------LQAIA--FYLYMLRAEVLLT----------------TVHGQVWKNG 131
+ RH L+A A +L +L L VHGQ + G
Sbjct: 152 AYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVG 211
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAE 186
+V +++D Y ++R+ LFD+M R A+WN +I Y + +AE
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARK----LFDKMIVRDMASWNALIAGYMKEGEIGVAE 267
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT--GSDQVTMATVLSACAH 244
LF +M +I SWT MI+ Y+QN +AL F++ + G+ + VT+ +VL ACA
Sbjct: 268 DLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 327
Query: 245 LGALDLGRGIQIYCRSLG------------------------RSLLVFFKLREKNLLCWN 280
AL+ GR I + +G R KNL+ WN
Sbjct: 328 SAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 387
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ A A HG EA+ +F+ M V+P+
Sbjct: 388 TMITAYASHGCGVEAVSIFENMLRAGVQPD 417
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+W TMIT+Y+ + EA+ F ++G D VT +LS C+H G +D G
Sbjct: 385 AWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 437
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 51/230 (22%)
Query: 102 HPLQAIAFYLYMLRAEV--LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159
HP + ++ R L H Q+ +G F+ MV Y+ S + V
Sbjct: 76 HPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV- 134
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
FD + +N++I AY R + L+A
Sbjct: 135 ---FDRIDNPSSLLYNSIIRAYTR-----------------------HGXXXXXXXXLEA 168
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IY 257
+ + G D T+ VL +CA L + +GR + +
Sbjct: 169 YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 228
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C +G + +F K+ +++ WN++ G A +F+RM + N+
Sbjct: 229 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI 278
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS +F ++R V FD M ++ TW
Sbjct: 34 SETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRFGKARCV----FDYMEDKNSVTW 89
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMIDAY R ++ LF++MP D+ SWT MI + + EAL F + + SG
Sbjct: 90 NTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISGVK 149
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR----SLGRSL 265
D V + L+AC +LGAL G I +YCR R
Sbjct: 150 PDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFARE- 208
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF K+ ++ ++ WNS+ A +G AHE+L F +M E P+
Sbjct: 209 -VFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPD 252
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I + N E+L F K ++ G
Sbjct: 191 NSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFN 250
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
D VT L+AC+H+G ++ GIQ +
Sbjct: 251 PDAVTFTGALTACSHVGLVE--EGIQYF 276
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V S + ++ AM+D Y+ + + + F M R +W T++ +
Sbjct: 262 VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI----FRSMNNRDIISWTTIVSGFT 317
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
L E+ F+KMP D SWT MI Y ++ +F+EAL+ F + + D+ TM +
Sbjct: 318 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 377
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+ACAHLGAL+LG I+ Y C + ++ +F ++ +++
Sbjct: 378 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 437
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ LA++G +AL MF M ++ P+
Sbjct: 438 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPD 472
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 131/328 (39%), Gaps = 72/328 (21%)
Query: 6 VRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQF 65
+ A ++ K S PT H + + L+ C S+ +L+ V+ +K N + L +
Sbjct: 25 IAATSSALKSFSPPT-------HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRV 77
Query: 66 ISFC-TSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL 120
++FC T + Y +F ++ EPN+F+++ +S L P ++ YL MLR V
Sbjct: 78 MTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 137
Query: 121 T---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159
+HG V K+G VFV TA+V Y + +R V
Sbjct: 138 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV- 196
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
FD P+ TWN +I AY ++ +F E+
Sbjct: 197 ---FDVCPKADVITWNMIISAYNKVG--------------------------KFEESRRL 227
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCW 279
F + VT+ VLSAC+ L L G+ + Y ++ E NL+
Sbjct: 228 FLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK---------VESNLVLE 278
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENV 307
N++ + A G ALG+F M ++
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDI 306
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 48/203 (23%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRL------FDE------------MPERKFATW------- 174
TAM+D Y SN+F E+ + R + DE + + W
Sbjct: 341 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 400
Query: 175 ----------NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
N +ID Y + AE +F +M D +WT MI + N +ALD
Sbjct: 401 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDM 460
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCW 279
F+ K+ D++T VLSAC H G +D GR + + R + + E N+ +
Sbjct: 461 FSNMLKASILPDEITYIGVLSACTHTGLVDKGR--KYFLRMTSQHGI------EPNIAHY 512
Query: 280 NSITEALAIHGFAHEALGMFDRM 302
+ + LA G EA + + M
Sbjct: 513 GCLVDLLARAGRLKEAYEVIENM 535
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+++D Y + +++ LFD+MP R TW TM+D YA+L A+ LF++MP
Sbjct: 258 NSLIDGYVKHGRIEDAKD----LFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQ 313
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QN+ EA+D FN K+S D+ T+ VLSA A LG L
Sbjct: 314 RDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 373
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ +++ VF ++ K++ WN++ LAIHG
Sbjct: 374 MHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGL 433
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 434 GESAFDMLLQIERRSIKPD 452
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG + K G S +F+Q ++ Y +R+V FD M +R ++N+MID Y +
Sbjct: 146 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQV----FDRMSQRDSVSYNSMIDGYVK 201
Query: 184 L-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A LF+ MP+ ++ SW +MI Y+Q + +D + D ++
Sbjct: 202 CGLIESARELFDLMPSEKKNLISWNSMINGYAQRA---DGVDIASNLFDEMPEKDLISWN 258
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+++ G ++ + + F K+ ++++ W ++ + A GF H+A
Sbjct: 259 SLIDGYVKHGRIEDAKDL-------------FDKMPRRDVVTWATMVDGYAKLGFVHQAK 305
Query: 297 GMFDRMTYENV 307
+FD+M +V
Sbjct: 306 SLFDQMPQRDV 316
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR------- 252
W +I S+S + R+AL F K+G D+ +++ VL AC+ LG + G
Sbjct: 91 WNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLR 150
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G+ + C LG + VF ++ +++ + +NS+ + G A
Sbjct: 151 KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARE 210
Query: 298 MFDRMTYE 305
+FD M E
Sbjct: 211 LFDLMPSE 218
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V S + ++ AM+D Y+ + + + F M R +W T++ +
Sbjct: 241 VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI----FRSMNNRDIISWTTIVSGFT 296
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
L E+ F+KMP D SWT MI Y ++ +F+EAL+ F + + D+ TM +
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 356
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+ACAHLGAL+LG I+ Y C + ++ +F ++ +++
Sbjct: 357 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 416
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ LA++G +AL MF M ++ P+
Sbjct: 417 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPD 451
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 131/328 (39%), Gaps = 72/328 (21%)
Query: 6 VRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQF 65
+ A ++ K S PT H + + L+ C S+ +L+ V+ +K N + L +
Sbjct: 4 IAATSSALKSFSPPT-------HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRV 56
Query: 66 ISFC-TSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL 120
++FC T + Y +F ++ EPN+F+++ +S L P ++ YL MLR V
Sbjct: 57 MTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 116
Query: 121 T---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159
+HG V K+G VFV TA+V Y + +R V
Sbjct: 117 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV- 175
Query: 160 RRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
FD P+ TWN +I AY ++ +F E+
Sbjct: 176 ---FDVCPKADVITWNMIISAYNKVG--------------------------KFEESRRL 206
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCW 279
F + VT+ VLSAC+ L L G+ + Y ++ E NL+
Sbjct: 207 FLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK---------VESNLVLE 257
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENV 307
N++ + A G ALG+F M ++
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDI 285
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 40/153 (26%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLF------DE------------MPERKFATW------- 174
TAM+D Y SN+F E+ + R + DE + + W
Sbjct: 320 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 379
Query: 175 ----------NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
N +ID Y + AE +F +M D +WT MI + N +ALD
Sbjct: 380 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDM 439
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
F+ K+ D++T VLSAC H G +D GR
Sbjct: 440 FSNMLKASILPDEITYIGVLSACTHTGLVDKGR 472
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 32/223 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS +F R +R +FD M ++ TW
Sbjct: 35 SEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRF----RKARLIFDYMEDKNSVTW 90
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ LF++M D+ SWT M+ + + EAL F + + SG
Sbjct: 91 NTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVK 150
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------V 267
D V + L+AC +LGAL G I Y S + SL+ V
Sbjct: 151 PDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 210
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F K+ ++ ++ WNS+ A +G AHE+L F +M E +P+
Sbjct: 211 FDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPD 253
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 192 NSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFK 251
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 252 PDAVTFTGALTACSHVGLVEEG 273
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 33/215 (15%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + ++G + + A++D Y + +R LFD M ++ +W TM+ YAR
Sbjct: 282 HCYIKEHGLEFTIPLTNALMDMYVKCGELL----TARVLFDNMAQKTLVSWTTMVLGYAR 337
Query: 184 LA------ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
E+L+ K+P + W +I+ Q KQ +EAL F++ + D+VTM
Sbjct: 338 FGFLDVAREILY-KIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVN 396
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
LSAC+ LGALD+G I Y C ++ R+L VF ++ ++N
Sbjct: 397 CLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRN 456
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W ++ LA+HG A +AL F +M + + P+
Sbjct: 457 CLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPD 491
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 138/319 (43%), Gaps = 39/319 (12%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDY 78
T+ SF+R + + + L++C S+ +L+ + A +V T + F A + ++FC S +DY
Sbjct: 50 TTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDY 109
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYL-YMLRAEVLLTTVHGQVWKNGFSSPVF 137
+ +++E NVF ++A ++R +++ +ML +LL G + + + P+
Sbjct: 110 CTRILYRIKELNVFSWNA--AIRGYVESGDIEGGFMLYKRMLLG---GTLKPDNHTYPLL 164
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
++ YS V + F E N I EL +FNK
Sbjct: 165 LK-GCCGQYSSCLGLGVLGHVLKFGF----ECDIFVHNASITMLLSCGELSVAYDVFNKS 219
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ +W +MIT + EA+ + + + +++TM ++S+C+ + L+LG+
Sbjct: 220 RVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGK 279
Query: 253 GIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
Y C L + ++F + +K L+ W ++ A G
Sbjct: 280 EFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFG 339
Query: 291 FAHEALGMFDRMTYENVRP 309
F A + ++ ++V P
Sbjct: 340 FLDVAREILYKIPEKSVVP 358
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A ++D YA+ + +F ++P + +WT +I + + ++AL F+K
Sbjct: 427 ALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHI 486
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D++T VLSAC H G ++ GR
Sbjct: 487 GIVPDEITFLGVLSACCHGGLVEEGR 512
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 36/196 (18%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+Q MV N F SR V+ F + E K + T I R+ EL ++
Sbjct: 76 IQAQMVSTGLIENGFAASRLVA---FCALSESKELDYCTRI--LYRIKEL--------NV 122
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQ- 255
SW I Y ++ + + GT D T +L C + LG G+
Sbjct: 123 FSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLG 182
Query: 256 ---------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+ C L + VF K R ++L+ WNS+ G A E
Sbjct: 183 HVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIE 242
Query: 295 ALGMFDRMTYENVRPN 310
A+ ++ M E VRPN
Sbjct: 243 AIKIYKEMEAEKVRPN 258
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 33/215 (15%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + ++G + + A++D Y + +R LFD M ++ +W TM+ YAR
Sbjct: 282 HCYIKEHGLEFTIPLTNALMDMYVKCGELL----TARVLFDNMAQKTLVSWTTMVLGYAR 337
Query: 184 LA------ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
E+L+ K+P + W +I+ Q KQ +EAL F++ + D+VTM
Sbjct: 338 FGFLDVAREILY-KIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVN 396
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
LSAC+ LGALD+G I Y C ++ R+L VF ++ ++N
Sbjct: 397 CLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRN 456
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W ++ LA+HG A +AL F +M + + P+
Sbjct: 457 CLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPD 491
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 138/319 (43%), Gaps = 39/319 (12%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDY 78
T+ SF+R + + + L++C S+ +L+ + A +V T + F A + ++FC S +DY
Sbjct: 50 TTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDY 109
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYL-YMLRAEVLLTTVHGQVWKNGFSSPVF 137
+ +++E NVF ++A ++R +++ +ML +LL G + + + P+
Sbjct: 110 CTRILYRIKELNVFSWNA--AIRGYVESGDIEGGFMLYKRMLLG---GTLKPDNHTYPLL 164
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
++ YS V + F E N I EL +FNK
Sbjct: 165 LK-GCCGQYSSCLGLGVLGHVLKFGF----ECDIFVHNASITMLLSCGELSVAYDVFNKS 219
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ +W +MIT + EA+ + + + +++TM ++S+C+ + L+LG+
Sbjct: 220 RVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGK 279
Query: 253 GIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
Y C L + ++F + +K L+ W ++ A G
Sbjct: 280 EFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFG 339
Query: 291 FAHEALGMFDRMTYENVRP 309
F A + ++ ++V P
Sbjct: 340 FLDVAREILYKIPEKSVVP 358
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A ++D YA+ + +F ++P + +WT +I + + ++AL F+K
Sbjct: 427 ALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHI 486
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D++T VLSAC H G ++ GR
Sbjct: 487 GIVPDEITFLGVLSACCHGGLVEEGR 512
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 36/196 (18%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+Q MV N F SR V+ F + E K + T I R+ EL ++
Sbjct: 76 IQAQMVSTGLIENGFAASRLVA---FCALSESKELDYCTRI--LYRIKEL--------NV 122
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQ- 255
SW I Y ++ + + GT D T +L C + LG G+
Sbjct: 123 FSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLG 182
Query: 256 ---------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+ C L + VF K R ++L+ WNS+ G A E
Sbjct: 183 HVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIE 242
Query: 295 ALGMFDRMTYENVRPN 310
A+ ++ M E VRPN
Sbjct: 243 AIKIYKEMEAEKVRPN 258
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R TW TMID YA+L A+ LF+++P
Sbjct: 240 NSMIDGYVKHGRIEDAKD----LFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPH 295
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ F K K+S D+ T+ VLSA A LG L
Sbjct: 296 RDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 355
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ Y C S+ ++LVF L KN+ WN+I LAIHG
Sbjct: 356 MHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGL 415
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 416 GGPAFDMLLQIERLSIKPD 434
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 60/223 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y SR+V FD MP+R ++N+MID Y
Sbjct: 127 IHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQV----FDRMPQRDSVSYNSMIDGYV 182
Query: 183 R---------------------------------------LAELLFNKMPAWDIRSWTTM 203
+ +A LF++MP D+ SW +M
Sbjct: 183 KCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSM 242
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGR 263
I Y ++ + +A D F+ + D +T AT++ A LG + + +
Sbjct: 243 IDGYVKHGRIEDAKDLFDVMPR----RDVITWATMIDGYAKLGFIHQAKTL--------- 289
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
F ++ ++++ +NS+ + + EAL +F +M E+
Sbjct: 290 ----FDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKES 328
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 62/332 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF----IDYTILVFPQMQEP 89
L CS+ + ++A +++T LD + ++F R + +D ++ + + ++P
Sbjct: 296 LTSCSTARRAAELHAAVLRTGL-LDA--TDRAVAFRLQRAYAASGRLDLSLALLRRTRDP 352
Query: 90 NVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT------------------VHGQV 127
Y HA SS H L A+A ML +L T +HG
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSPGRALHGYA 412
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAYARLAE 186
+K + +V TA++ Y+ + +R LFD+M P+ + M+ YA +
Sbjct: 413 FKLALAGDSYVATALLGMYARAG----DATAARALFDDMLPDPHVVSVTAMLTCYADMGA 468
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L LF+ +P D W MI Y+Q+ + EAL F + SG D+VT+ VLSA
Sbjct: 469 LDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSA 528
Query: 242 CAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNLLC 278
A LG ++ G+ + Y C SLG ++ VF + +K+++
Sbjct: 529 VAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVV 588
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A+HG + +AL MF + + + P
Sbjct: 589 WNAMINGYAMHGDSRKALEMFVQSREQGLWPT 620
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ID Y + L +F+ + DI W MI Y+ + R+AL+ F ++++ G
Sbjct: 559 TALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLW 618
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+T +L+AC+H G ++ GR
Sbjct: 619 PTDITFIGLLNACSHSGMVEEGR 641
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V +G S V + A++D Y S +++ +F+ + R +W TMI +A
Sbjct: 250 LHGFVDSDGVSCTVRLMNALMDMYIKCG----SLEMAKSVFERIEHRTVVSWTTMIVGFA 305
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A +F++MP D+ W ++T Y Q KQ +EAL F++ +++ D++TM
Sbjct: 306 KFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVN 365
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
+L+AC+ LGAL++G + Y C ++ +++ +F ++ EKN
Sbjct: 366 LLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKN 425
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W ++ LA HG A+EA+ F M +P+
Sbjct: 426 ALTWTAMICGLANHGHANEAIEHFRTMIELGQKPD 460
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 77/206 (37%), Gaps = 50/206 (24%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
V + G S VFV A S ++RR LFD P R +WNT+I Y R
Sbjct: 150 HVLRLGLDSDVFVVNAATHFLSIRGPMEDARR----LFDRSPVRDLVSWNTLIGGYVRRG 205
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
PA + + M+ A DA + D+VTM +S C +
Sbjct: 206 N------PAEALELFWRMV-----------AEDAVVR-------PDEVTMIAAVSGCGQM 241
Query: 246 GALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSIT 283
L+LGR + I C SL + VF ++ + ++ W ++
Sbjct: 242 RDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMI 301
Query: 284 EALAIHGFAHEALGMFDRMTYENVRP 309
A G +A +FD M +V P
Sbjct: 302 VGFAKFGLMDDARKVFDEMPERDVFP 327
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
++F +D VF +M E +VF ++A + + +A++ + M A V+ +
Sbjct: 305 AKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMV 364
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
S ++ M + +++ E R+ +F A ++ID YA+
Sbjct: 365 NLLTACSQLGALEMGM-----WVHRYIEKHRL---VF------SVALGTSLIDMYAKCGN 410
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ +F ++P + +WT MI + + EA++ F + G D++T VLSA
Sbjct: 411 IEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSA 470
Query: 242 CAHLGALDLGR 252
C H G + GR
Sbjct: 471 CCHAGLVKEGR 481
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V++NG + A++D Y K R + ++FD M + TWN++I R
Sbjct: 347 HAYVFRNGLERLDNISNAIIDMYMKCGK----REAACKVFDSMSNKTVVTWNSLIAGLVR 402
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
EL +F +MP ++ SW TMI + Q F EA+D + + G D+VTM +
Sbjct: 403 DGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGI 462
Query: 239 LSACAHLGALDLGRGIQIYCR--------SLGRSLL--------------VFFKLREKNL 276
SAC +LGALDL + I Y LG +L+ VF + ++++
Sbjct: 463 ASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDV 522
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W + A+ G A A+ +FD M ++V+ +
Sbjct: 523 SAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKAD 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K G +FV +++ Y+ K + R++FDEM ER
Sbjct: 144 VHGVVVKMGLVKDLFVANSLIHFYAACGKV----DLGRKVFDEMLER------------- 186
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ SWT++I YS +EA+ F + + G + VTM +SAC
Sbjct: 187 -------------NVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISAC 233
Query: 243 AHLGALDLGRGIQIYCRSLG--------RSLL--------------VFFKLREKNLLCWN 280
A L L+LG+ + LG +LL +F + +KNL+ +N
Sbjct: 234 AKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYN 293
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+I HG A E L + D M + RP+
Sbjct: 294 TIMSNYVQHGLAGEVLVVLDEMLQKGQRPD 323
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 122/312 (39%), Gaps = 57/312 (18%)
Query: 34 LKKCSSI---KELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
L CS I E V+ +VK D F+A I F + +D VF +M E N
Sbjct: 129 LSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHF-YAACGKVDLGRKVFDEMLERN 187
Query: 91 VFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
V + + +S + +A+ + M+ V +PV MV
Sbjct: 188 VVSWTSLINGYSVVNMAKEAVCLFFEMVEVGV-------------EPNPV----TMVCAI 230
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFAT----WNTMIDAYARLAEL-----LFNKMPAWDI 197
S K + + +++ + M E + N ++D Y + ++ +F++ ++
Sbjct: 231 SACAKL-KDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNL 289
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
+ T++++Y Q+ E L ++ + G D+VTM + ++ACA LG L +G+ Y
Sbjct: 290 VMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAY 349
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C + VF + K ++ WNS+ L G A
Sbjct: 350 VFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELA 409
Query: 296 LGMFDRMTYENV 307
L +F M N+
Sbjct: 410 LRIFGEMPESNL 421
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-- 181
HG V + G S V VQ A++ YS F +RRLFD +WN+MI Y
Sbjct: 289 HGLVIRAGLCSQVNVQNALIHMYSSCLDVF----AARRLFDSGECLDQYSWNSMIAGYLK 344
Query: 182 ---ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ A LF+ MP D SW+T+I+ QN Q +AL F+ + G D+VT+ +V
Sbjct: 345 NGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSV 404
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
+SAC +L AL+ G+ + Y C L +L F + EK
Sbjct: 405 ISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGT 464
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
CWN++ LA++G ++L MF M + PN
Sbjct: 465 PCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPN 499
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 112/287 (39%), Gaps = 77/287 (26%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR------FHFID 77
+ + ++ L +C S + L ++A + + D F A + + F ++ FH
Sbjct: 1 MLTVSLLDAHLARCCSARHLLQIHAQFIASGLLADAFAASRLLLFTSASRLLPLPFH--- 57
Query: 78 YTILVFPQMQEPNVFVYHAF------------------------SSLRHPLQAIAFYLYM 113
+++ + ++ PN F + S HP+ A A
Sbjct: 58 HSLRLLRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYASLPAPPDSYTHPILAAAC---A 114
Query: 114 LRAEVLLT-TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
R +V+ VH +GF ++++ A++ YS +++RRV FD P
Sbjct: 115 SRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRV----FDAGPVWDAV 170
Query: 173 TWNTMIDAYARLAEL-----LFNKMP-------------------------------AWD 196
+WNT++ AY ++ +F +MP D
Sbjct: 171 SWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRD 230
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
I +WT MI+ + +N F EAL F+ ++ D+ M +V+SACA
Sbjct: 231 IFTWTAMISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACA 277
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGA 247
FN M W +I + N ++LD F++ + S T + +++T VLSAC H G
Sbjct: 456 FNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGL 515
Query: 248 LDLGRGIQIYCRSLGRSLLVFFKLRE------KNLLCWNSITEALAIHGFAHEALGMFDR 301
+D GR FFKL + N+ + + + L G+ EA M
Sbjct: 516 VDEGRH--------------FFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQS 561
Query: 302 M 302
M
Sbjct: 562 M 562
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K GF S VFV + +VD YS +R++FDE+PE+ +NT+I
Sbjct: 165 IHGHVVKFGFMSYVFVGSPLVDMYSKMGMI----SCARKVFDELPEKNVVMYNTLIMGLM 220
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R + LF +M D SWT+MIT ++QN R+A+D F + K DQ T +
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGS 280
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+AC + AL G+ + Y C+++ + VF K+ KN
Sbjct: 281 VLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKN 340
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ +G++ EA+ F M + P+
Sbjct: 341 VVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPD 375
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 31/165 (18%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y + AE +F KM ++ SWT M+ Y QN EA+ F+ +K G
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE---------------- 273
D T+ +V+S+CA+L +L+ G Q + R+L L+ F +
Sbjct: 374 PDDFTLGSVISSCANLASLE--EGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSH 431
Query: 274 --------KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ + W ++ A G A+E +G+F+ M ++P+
Sbjct: 432 RLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPD 476
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 62/233 (26%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA-----ELLFNK 191
+ +T +++N S S + ++FD+MP +WNT++ AY++L E LF+
Sbjct: 41 YPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDA 100
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGAL 248
MP D SW ++I+ Y+ +++ A+N K+ GS +++T +T+L + G +
Sbjct: 101 MPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKN-DGSFNLNRITFSTLLILASKRGCV 159
Query: 249 DLGRGIQIYCRSLGRSLLVF---------------------------------------- 268
LGR I + G VF
Sbjct: 160 KLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGL 219
Query: 269 -------------FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
F++RE++ + W S+ +G +A+ +F M EN++
Sbjct: 220 MRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQ 272
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LFN++ D +WT +++ Y+Q + E + F G
Sbjct: 415 NALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLK 474
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D+VT VLSAC+ G ++ G I
Sbjct: 475 PDKVTFIGVLSACSRAGLVEKGNQI 499
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 36/214 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT---WNTMIDAYARLA 185
K GF FV+TA++D ++ + ++F+++ K+ + WN MI AYAR+
Sbjct: 224 KVGFRPNYFVKTALLDMHAKCGNL----EAAHKIFEQLGVYKYRSSVPWNAMISAYARVG 279
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTGSDQVTMATV 238
+L LF+KMP D SW +MI Y+QN + +A+ F + + + D+VTM +V
Sbjct: 280 DLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSV 339
Query: 239 LSACAHLGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKNL 276
SAC HLG L LG I +Y C S+ ++L+F ++ ++L
Sbjct: 340 FSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDL 399
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +N++ A HG E++ + +M + + P+
Sbjct: 400 VSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 433
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 76/265 (28%)
Query: 108 AFYLYMLRA---EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
+FY M+++ E +L H V K+G+ +V+ ++ Y+ + +R+LFD
Sbjct: 33 SFYSVMMKSAGSESMLFLAH--VLKSGYDRDHYVRNGILGIYAK----YGPIEFARKLFD 86
Query: 165 EMPERKFATWNTMIDAY----------------------------------------ARL 184
EMP+R A WN MI Y +
Sbjct: 87 EMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKT 146
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACA 243
A + F+KMP + SW M++ Y+Q E + FN G D+ T ATV+S+C+
Sbjct: 147 ARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCS 206
Query: 244 HLGALDLGRGI-----------------------QIYCRSLGRSLLVFFKL---REKNLL 277
LG L I C +L + +F +L + ++ +
Sbjct: 207 SLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSV 266
Query: 278 CWNSITEALAIHGFAHEALGMFDRM 302
WN++ A A G A +FD+M
Sbjct: 267 PWNAMISAYARVGDLPSAKHLFDKM 291
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+ +N++I+ Y+R A L+F +M D+ S+ T+I+ ++++ E+++ +K K+
Sbjct: 368 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 427
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR 252
G D++T +L+AC+H G LD G+
Sbjct: 428 DGIEPDRITYIAILTACSHAGLLDEGQ 454
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 32/205 (15%)
Query: 134 SPVFV-QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL----- 187
PV V + A++D Y+ + +FD M R +W ++ + L ++
Sbjct: 252 EPVRVLENALIDMYAACGDM----DTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARN 307
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
F+KMP D SWT MI Y Q +F+E L F + + + D+ TM ++L+ACAHLGA
Sbjct: 308 YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGA 367
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L+LG I+ Y C ++ +++ +F + ++ + W ++
Sbjct: 368 LELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
LAI+G+ EAL MF +M ++ P+
Sbjct: 428 LAINGYGEEALDMFSQMLKASITPD 452
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 65/300 (21%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
+K C S+ +L+ +++ + T + + Q I+FC ++Y +VF M PN F
Sbjct: 26 IKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHF 85
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
V++ +S + P A++ Y ML V+ +H +
Sbjct: 86 VWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHI 145
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GFSS VFVQ A++ YS S + +R V
Sbjct: 146 VKLGFSSNVFVQNALIHLYSLSGEVSVARGV----------------------------- 176
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
F++ D+ +W MI+ Y+++KQF E++ F++ ++ +T+ +VLSAC+ L
Sbjct: 177 -FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKD 235
Query: 248 LDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L++G+ + Y + L K+ +L N++ + A G ALG+FD M +V
Sbjct: 236 LNVGKRVHRYVKDL--------KIEPVRVL-ENALIDMYAACGDMDTALGIFDNMKSRDV 286
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + +FN MP D SWT +I + N EALD F++ K+
Sbjct: 391 NALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT 450
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+VT VL AC H G +D G+
Sbjct: 451 PDEVTCIGVLCACTHSGMVDKGK 473
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 97/211 (45%), Gaps = 31/211 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V + G S V VQ A++ YS +RRLFD +WN+MI Y +
Sbjct: 292 HGLVVRAGLGSRVNVQNALIHMYSSCLDVV----AARRLFDSSESLDHFSWNSMISGYLK 347
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A+ LFN MP D SW+ MI QN Q EAL F+ + D+VT+ +V
Sbjct: 348 NGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSV 407
Query: 239 LSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNL 276
+SAC +L AL+ G+ + Y R LG SL+ VF + EK
Sbjct: 408 ISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGT 467
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENV 307
CWN++ LA++G +L MF M +
Sbjct: 468 PCWNAVIVGLAMNGLVTRSLDMFSEMETSGI 498
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 60/280 (21%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF------HFID 77
+ + ++ QL +C S + L ++A + + D + A + + F TS +
Sbjct: 1 MLTVSLLDAQLSRCRSARHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARLLPQPLH 60
Query: 78 YTILVFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLY--MLRAEVLLT------------ 121
+++ +F ++ PN F + ++LR L + F LY M A T
Sbjct: 61 HSLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASMPAAPDTYTHPLLAAACAARG 120
Query: 122 ------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV----------------- 158
VH K+GF ++++ A++ YS +RRV
Sbjct: 121 DAREGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILA 180
Query: 159 ----------SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTM 203
+ +F MPER A ++M+ +AR A +F+ D +WT M
Sbjct: 181 TYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAM 240
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
I+ + +N F EAL F+ ++ G D+ M +V++ACA
Sbjct: 241 ISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACA 280
>gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K GF V+V T +++ Y+ F E+++V FDEMP R TWN I A
Sbjct: 112 LHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQV----FDEMPVRNSVTWNVFITGLA 167
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
+ EL L ++MP + SWTT+I Y++ Q ++AL F G ++T+
Sbjct: 168 KWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLL 227
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG---------RSLL--------------VFFKL-- 271
+ A ++LGAL++ + I Y G SLL VF ++
Sbjct: 228 AIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAA 287
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W SI A A+HG A EAL F+RM E ++PN
Sbjct: 288 KGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPN 326
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 176 TMIDAYARL-----AELLFNKMPA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+++D YA+ A +F ++ A ++ SWT++I++++ + +EAL+ F + +K
Sbjct: 264 SLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECL 323
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+++T +VL+AC+H G ++ G
Sbjct: 324 KPNRITFLSVLNACSHGGLVEEG 346
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 85/334 (25%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQE 88
I + L+ C+S+++L ++A I+ + ++++ ++FC S + Y LVF ++
Sbjct: 8 ILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHN 67
Query: 89 PNVFVYH----AFSSLRHPLQ--AIAFYLYMLRA----------------------EVLL 120
P ++ FS PLQ AI FY +ML A E
Sbjct: 68 PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC 127
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VHG + + G+ V + T ++ +Y+ N E+ + ++F+EMP R +WN
Sbjct: 128 REVHGFIIRFGYDQDVVLCTNLIRSYA-GNGLIET---AHKVFEEMPARDLVSWN----- 178
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+MI+ Y Q EAL +++ + S G D T+ ++LS
Sbjct: 179 ---------------------SMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLS 217
Query: 241 ACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNL 276
+CAH+GAL + G+Q++ C SL +L +F + ++++
Sbjct: 218 SCAHVGALHM--GVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDV 275
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ +HG EA+ F M VRPN
Sbjct: 276 FTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 309
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
++F RR+ +F N +ID YA+ L +FN MP D+ +W +MI
Sbjct: 232 HRFAGERRLVENIF---------VGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMI 282
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
Y + + EA+ F +G + +T +L C+H G + G
Sbjct: 283 VGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 329
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNK---QFREALDAFNKTKKSGTGSDQVTMATVLSA 241
A+L+F+++ +W +MI +SQ+ Q + + + S D T + +L A
Sbjct: 58 AQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKA 117
Query: 242 CAHLGALDLGRGIQIY--------------CRSLGRSLL----------VFFKLREKNLL 277
C A + G+ +++ C +L RS VF ++ ++L+
Sbjct: 118 CEE--AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLV 175
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
WNS+ G EAL M+D+M NV +G
Sbjct: 176 SWNSMISCYCQTGLHEEALKMYDQMRISNVGFDG 209
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 97/212 (45%), Gaps = 54/212 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
V G V + G ++ +A++ YS + SRR+ FD MP R F TWN I AYA
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRI----FDGMPSRDFITWNAAISAYA 296
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
QN EA+ F+ K++G ++VT+ VLSAC
Sbjct: 297 --------------------------QNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330
Query: 243 AHLGALDLG---------RGIQ-------------IYCRSLGRSLLVFFKLREKNLLCWN 280
A +GALDLG RG+Q C SL + VF + KN WN
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390
Query: 281 SITEALAIHGFAHEALGMFDRMTYE--NVRPN 310
++ ALA HG A EAL +F+RM+ E + RPN
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPN 422
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 45/321 (14%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYT 79
T+ + I ++ + LK+C S K L+ ++ + + L Q IS Y+
Sbjct: 14 TNTNHSPIFLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKD-----FTYS 68
Query: 80 ILVFPQM-QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VF 137
L+F + PN + ++ LR Y L + T++ + N F+ P VF
Sbjct: 69 TLIFSHITPHPNDYAFNIM--LRATTTTWHDYPLTLHLYHQMKTLN--ISPNNFTFPFVF 124
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE-----LLFNKM 192
+ A ++ + R +F + T N+M+ Y R E +F+++
Sbjct: 125 LACANLEEIRMA------RLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLG 251
D+ SW ++++ Y++ REA++ F + ++ SG D++++ +VL AC LG L+LG
Sbjct: 179 TEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELG 238
Query: 252 RGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R ++ + C L S +F + ++ + WN+ A A +
Sbjct: 239 RWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G A EA+ +F M V PN
Sbjct: 299 GMADEAISLFHSMKENGVDPN 319
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS- 230
+ID YA+ L +FN MP + SW MI++ + + + +EAL F + G +
Sbjct: 361 LIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSAR 420
Query: 231 -DQVTMATVLSACAHLGALDLG 251
+ +T ++LSAC H G +D G
Sbjct: 421 PNDITFVSLLSACVHAGLVDEG 442
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
+ ++ ++D ++ + E++ V FD M R +W +++ +A + ++ F+
Sbjct: 243 LILENVLIDMFAACGEMDEAQSV----FDNMKNRDVISWTSIVTGFANIGQIDLARKYFD 298
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P D SWT MI Y + +F EAL F + + S D+ TM ++L+ACAHLGAL+L
Sbjct: 299 QIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALEL 358
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G ++ Y C ++G++ VF ++ K+ W ++ LAI
Sbjct: 359 GEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAI 418
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
+G EAL MF M ++ P+
Sbjct: 419 NGHGEEALAMFSNMIEASITPD 440
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 65/300 (21%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
L+KC S+ +L+ +++ +K + D K+ I+FC + + Y VF + +P +F
Sbjct: 14 LEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLF 73
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVL----------------LTTVHGQVW---- 128
+++ +S + HP ++ YL ML + + + +G+V
Sbjct: 74 IWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHA 133
Query: 129 -KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K+GF S +FVQ A + +S RL D LA
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLC-----------RLVD-------------------LARK 163
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+F+ AW++ +W M++ Y++ KQF+++ F + +K G + VT+ +LSAC+ L
Sbjct: 164 VFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKD 223
Query: 248 LDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L+ G+ I Y + E+NL+ N + + A G EA +FD M +V
Sbjct: 224 LEGGKHIYKYING---------GIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDV 274
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + A+ +F +M D +WT MI + N EAL F+ ++
Sbjct: 379 NALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASIT 438
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D++T VL AC H G ++ G+
Sbjct: 439 PDEITYIGVLCACTHAGMVEKGQ 461
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 85/334 (25%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQE 88
I + L+ C+S+++L ++A I+ + ++++ ++FC S + Y LVF ++
Sbjct: 26 ILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHN 85
Query: 89 PNVFVYH----AFSSLRHPLQ--AIAFYLYMLRA----------------------EVLL 120
P ++ FS PLQ AI FY +ML A E
Sbjct: 86 PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC 145
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
VHG + + G+ V + T ++ +Y+ N E+ + ++F+EMP R +WN
Sbjct: 146 REVHGFIIRFGYDQDVVLCTNLIRSYA-GNGLIET---AHKVFEEMPARDLVSWN----- 196
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+MI+ Y Q EAL +++ + S G D T+ ++LS
Sbjct: 197 ---------------------SMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLS 235
Query: 241 ACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNL 276
+CAH+GAL + G+Q++ C SL +L +F + ++++
Sbjct: 236 SCAHVGALHM--GVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDV 293
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ +HG EA+ F M VRPN
Sbjct: 294 FTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 327
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
++F RR+ +F N +ID YA+ L +FN MP D+ +W +MI
Sbjct: 250 HRFAGERRLVENIF---------VGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMI 300
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
Y + + EA+ F +G + +T +L C+H G + G
Sbjct: 301 VGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 347
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNK---QFREALDAFNKTKKSGTGSDQVTMATVLSA 241
A+L+F+++ +W +MI +SQ+ Q + + + S D T + +L A
Sbjct: 76 AQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKA 135
Query: 242 CAHLGALDLGRGIQIY--------------CRSLGRSLL----------VFFKLREKNLL 277
C A + G+ +++ C +L RS VF ++ ++L+
Sbjct: 136 CEE--AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLV 193
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
WNS+ G EAL M+D+M NV +G
Sbjct: 194 SWNSMISCYCQTGLHEEALKMYDQMRISNVGFDG 227
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 99/212 (46%), Gaps = 54/212 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
V G V + G ++ +A++ YS + SRR+ FD MP R F TWN I AYA
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRI----FDGMPSRDFITWNAAISAYA 296
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
QN EA+ F+ K++G ++VT+ VLSAC
Sbjct: 297 --------------------------QNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330
Query: 243 AHLGALDLG---------RGIQ-----------IY--CRSLGRSLLVFFKLREKNLLCWN 280
A +GALDLG RG+Q +Y C SL + VF + KN WN
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390
Query: 281 SITEALAIHGFAHEALGMFDRMTYE--NVRPN 310
++ ALA HG A EAL +F+RM+ E + RPN
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPN 422
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 45/321 (14%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYT 79
T+ + I ++ + LK+C S K L+ ++ + + L Q IS Y+
Sbjct: 14 TNTNHSPIFLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKD-----FTYS 68
Query: 80 ILVFPQM-QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VF 137
L+F + PN + ++ LR Y L + T++ + N F+ P VF
Sbjct: 69 TLIFSHITPHPNDYAFNIM--LRATTTTWHDYPLTLHLYHQMKTLN--ISPNNFTFPFVF 124
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE-----LLFNKM 192
+ A ++ + R +F + T N+M+ Y R E +F+++
Sbjct: 125 LACANLEEIRMA------RLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLG 251
D+ SW ++++ Y++ REA++ F + ++ SG D++++ +VL AC LG L+LG
Sbjct: 179 TEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELG 238
Query: 252 RGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R ++ + C L S +F + ++ + WN+ A A +
Sbjct: 239 RWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G A EA+ +F M V PN
Sbjct: 299 GMADEAISLFHSMKENGVDPN 319
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS- 230
+ID YA+ L +FN MP + SW MI++ + + + +EAL F + G +
Sbjct: 361 LIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSAR 420
Query: 231 -DQVTMATVLSACAHLGALDLG 251
+ +T ++LSAC H G +D G
Sbjct: 421 PNDITFVSLLSACVHAGLVDEG 442
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 35/204 (17%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAYARLAEL-----LFN 190
FV+TA++D Y+ S +RR+FDE+ R TWN MI AY R+ L LFN
Sbjct: 296 FVRTALLDMYAKCG----SIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFN 351
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTGSDQVTMATVLSACAHLGAL 248
MP ++ +W +MI Y+QN Q A++ F + T K T D+VTM +V+SAC HLGAL
Sbjct: 352 TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT-PDEVTMVSVISACGHLGAL 410
Query: 249 DLGRGI-------QI---------------YCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+LG + QI C S+ + VF ++ ++++ +N++
Sbjct: 411 ELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGF 470
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A HG EA+ + M + P+
Sbjct: 471 AAHGHGVEAINLMSTMKEGGIEPD 494
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 148/355 (41%), Gaps = 80/355 (22%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
IA+++ S +++L +A I+ + + + I+ CT YT L+F P
Sbjct: 7 IASRVGNFSHLRQL---HAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNP 63
Query: 90 NVFVYHA----FSSLRHPLQAIAFYLYM----LRAEVLLTTV------------HGQVWK 129
NVFV+ + +S L+ + + + +M +R + + + H V K
Sbjct: 64 NVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLK 123
Query: 130 NGFSSPVFVQTAMVDNYS------YSNKFF-----------------------ESRRVSR 160
G S FV+ A++D Y+ ++ K F ES ++
Sbjct: 124 LGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQ 183
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
LFD MPER TW M+ YA++ +L F+ MP + SW M++ Y+QN E
Sbjct: 184 WLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEE 243
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQI---------- 256
L F++ +G D+ T TV+SAC+ G L + IQ+
Sbjct: 244 VLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLD 303
Query: 257 ---YCRSLGRSLLVFFKLRE-KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C S+G + +F +L +N + WN++ A G A +F+ M NV
Sbjct: 304 MYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNV 358
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N MI Y+R + +F +M D+ S+ T+I+ ++ + EA++ + K+ G
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D+VT VL+AC+H G L+ GR +
Sbjct: 493 PDRVTFIGVLTACSHAGLLEEGRKV 517
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G + + A+VD Y ++ FD MP + +W +M+ A A
Sbjct: 233 VHSHLLVRGCRIDLILANALVDMYGKCGDLL----MAHTCFDMMPFKNAVSWTSMLCALA 288
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A + F ++P I SW MI+ Y Q +F EALD +N+ K G D+ T+A
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348
Query: 238 VLSACAHLGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKN 275
VLSAC LG L G+ G+ ++ C + ++ +F ++ KN
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKN 408
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WN+I ALA+HG A +AL F M ++ P+
Sbjct: 409 VISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPD 443
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 58/245 (23%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L++C S+ L ++A +V +D ++ S+C + Y +F ++ +P+ F
Sbjct: 19 LRRCGSVHRLNQLHAHLVVHG--VDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVL---------------------LTTVHGQV 127
VY+ A+ + P +A+ M+R +L + HG V
Sbjct: 77 VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GF VFV A++ +Y+ + +SRR FDEM +R +WN+MI+ YA
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRR----FFDEMVDRNVVSWNSMINGYA----- 187
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
Q REA F ++ G +D+ T+ ++L AC+ G
Sbjct: 188 ---------------------QAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGN 226
Query: 248 LDLGR 252
L+ G+
Sbjct: 227 LEFGK 231
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
G + F A++ + + + D A +N+++D YAR ++
Sbjct: 338 GLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTA 397
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF++MP+ ++ SW +I + + + + ++AL F D++T +LSAC H
Sbjct: 398 ISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHG 457
Query: 246 GALDLGR 252
G L+ G+
Sbjct: 458 GLLEAGQ 464
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+++P D + ++I +Y + +EAL + G ++ T+ +L ACA
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 245 LGA-----------LDLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSI 282
+ A + LG Q++ SLG S F ++ ++N++ WNS+
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
A G EA +F+ M + +
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGL 207
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 30/194 (15%)
Query: 147 SYSNKFFESRRV--SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRS 199
S + + + RR+ ++ LFD MP + TW TMID YA+L A+ LF++MP D+ +
Sbjct: 229 SLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVA 288
Query: 200 WTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY- 257
+ +M+ Y QNK EA+ FN K+S D+ T+ VLSA A LG L I +Y
Sbjct: 289 YNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYI 348
Query: 258 ---------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
C S+ +S+ VF ++ K++ WN++ LAIHG A
Sbjct: 349 MDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAF 408
Query: 297 GMFDRMTYENVRPN 310
M ++ +++P+
Sbjct: 409 DMLLQIEKRSIKPD 422
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 60/223 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG + K G S +F+Q ++ Y +R++FD MP+R ++N+MID Y
Sbjct: 115 VHGFLRKTGIYSDLFLQNCLIGLYLKCGCL----GFARQVFDRMPQRDSVSYNSMIDGYV 170
Query: 183 R---------------------------------------LAELLFNKMPAWDIRSWTTM 203
+ +A LF++MP D+ SW ++
Sbjct: 171 KCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSL 230
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGR 263
I Y ++++ +A F+ + D VT AT++ A LG + + +
Sbjct: 231 IDGYVKHRRIEDAKSLFDLMPR----KDVVTWATMIDGYAKLGFVHQAKKL--------- 277
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
F ++ +++++ +NS+ + + EA+G+F+ M E+
Sbjct: 278 ----FDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKES 316
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR------- 252
W +I S+S R AL F ++ D+ +++ VL AC+ LG +D G
Sbjct: 61 WNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLR 120
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G+ + C LG + VF ++ +++ + +NS+ + G A
Sbjct: 121 KTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 180
Query: 298 MFDRMTYE 305
+FD M E
Sbjct: 181 LFDLMPRE 188
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 138/329 (41%), Gaps = 56/329 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L +C ++EL+ ++A + + I C + F + +F ++ P++
Sbjct: 21 LAQCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLIS 80
Query: 94 YHAFSSLRHPL----QAIAFYLYMLRA---------------------EVLLTTVHGQVW 128
+ + SL L +AI+ + ++ A +V+ VHG ++
Sbjct: 81 FTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIF 140
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+ G V V A++D YS KF + +V FD M + TW +M+ Y + A +
Sbjct: 141 RLGLDGEVVVGNALIDMYSQCGKFESAVKV----FDRMSLKDEVTWGSMLHGYIKCAGVD 196
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
F+++P + +WT +IT + Q +Q AL+ F + G VT+ VLSACA
Sbjct: 197 SALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACA 256
Query: 244 HLGALDLGRGIQIYCRSLGRSL----------------------LVFFKLREKNLLCWNS 281
+GALDLGR I Y SL VF +++ K+ W +
Sbjct: 257 DIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTT 316
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + G +AL +F M V PN
Sbjct: 317 MISCCTVQGDGKKALELFQDMLRAGVVPN 345
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F ++ + D +WTTMI+ + ++AL+ F ++G
Sbjct: 284 NALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVV 343
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ VT +VLSAC+H G ++ GI+++ R R L L E + + + L
Sbjct: 344 PNSVTFVSVLSACSHSGLIE--EGIELFDRM--RQLYKIDPLLEH----YGCMIDLLGRG 395
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G EA + M NV P+
Sbjct: 396 GLLEEAEALIADM---NVEPD 413
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 96/334 (28%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
N+ P + ++ + KKCS++K+L+ ++A IV++ + F
Sbjct: 41 NTNPKDTCLYKEQLLKSHFKKCSTVKDLKQIHACIVQSGFEQNLF--------------- 85
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYM------------------ 113
++VF ++ P+ F+++ F P +A +Y M
Sbjct: 86 ----VIVFENIECPDEFLWNTMIRGFGKSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKV 141
Query: 114 ---LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L + +L +H V K GF S VFV+ ++ Y F+ +SR+LF+E+
Sbjct: 142 CGQLGSVLLGKQMHCSVLKYGFESHVFVRNTLIHMYG----IFKDFEISRQLFEEI---- 193
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
P+ ++ +W T+I Y +F+EALD F++ K
Sbjct: 194 ----------------------PSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEP 231
Query: 231 DQVTMATVLSACAHLGALDLGRGIQ--------------------IY--CRSLGRSLLVF 268
D+ T+ +L+AC+ LG LD+GR I +Y C +L + F
Sbjct: 232 DEATLVVILAACSALGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAF 291
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
K+ ++N + WN++ LA HG +EAL +F +M
Sbjct: 292 NKMSQRNTVTWNTMILGLATHGHTNEALVLFSKM 325
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 26/148 (17%)
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
++F + D W TMI + ++ + + A + + + ++ G +D T + ++ C LG
Sbjct: 87 IVFENIECPDEFLWNTMIRGFGKSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLG 146
Query: 247 ALDLGRGIQIYCRSLG---------RSLLV---------------FFKLREKNLLCWNSI 282
++ LG+ Q++C L R+ L+ F ++ L+ WN++
Sbjct: 147 SVLLGK--QMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFEEIPSPELVAWNTV 204
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
G EAL MF RM ++ P+
Sbjct: 205 IGCYVDCGRFKEALDMFSRMLKLHIEPD 232
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 31/196 (15%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWD 196
+++ Y S E+RR LFDEMPER +W M+ YA A LF++MP +
Sbjct: 208 LINGYVKSGDLDEARR----LFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRN 263
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW+ +I Y Q + +AL+ F + + + D+V + T+LSACA LGALD GR + +
Sbjct: 264 LVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHM 323
Query: 257 Y----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
Y C + + VF + +K + W+S+ LA+H F +
Sbjct: 324 YIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEK 383
Query: 295 ALGMFDRMTYENVRPN 310
A+ +F +M + P+
Sbjct: 384 AIELFAKMIECGIEPS 399
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 38/180 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K+G + TA++D YS + ++ ++F E ++K W++MI A
Sbjct: 321 LHMYIDKHGIKVDAHLSTALIDMYSKCGRI----DMAWKVFQETGDKKVFVWSSMIGGLA 376
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ S+ + +A++ F K + G ++T +L+AC
Sbjct: 377 ---------------------MHSFGE-----KAIELFAKMIECGIEPSEITYINILAAC 410
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G +D+ G+QI+ R +V + + + + I + L G H+A + + M
Sbjct: 411 THSGLVDV--GLQIFNR------MVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETM 462
>gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera]
Length = 610
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K GF V+V T +++ Y+ F E+++V FDEMP R TWN I A
Sbjct: 112 LHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQV----FDEMPVRNSVTWNVFITGLA 167
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
+ EL L ++MP + SWTT+I Y++ Q ++AL F G ++T+
Sbjct: 168 KWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLL 227
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG---------RSLL--------------VFFKL-- 271
+ A ++LGAL++ + I Y G SLL VF ++
Sbjct: 228 AIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAA 287
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W SI A A+HG A EAL F+RM E ++PN
Sbjct: 288 KGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPN 326
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 176 TMIDAYARL-----AELLFNKMPA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+++D YA+ A +F ++ A ++ SWT++I++++ + +EAL+ F + +K
Sbjct: 264 SLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECL 323
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+++T +VL+AC+H G ++ G
Sbjct: 324 KPNRITFLSVLNACSHGGLVEEG 346
>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMP-ERKFATWNTMIDAYARLAELL-----FN 190
FV+TA++D N + +R +F+E+ R +TWN MI AY R+ +LL F+
Sbjct: 223 FVKTALLD----MNAKCGNLEAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSARDLFD 278
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALD 249
KMP D SW TMI+ Y+QN Q A++ F + + D+VTM +++SAC HLGAL+
Sbjct: 279 KMPERDAVSWNTMISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLGALE 338
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG I + C ++ + +F ++ ++++ +NS+ A
Sbjct: 339 LGTWIVNFISEYRIELTISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNSLIGGFA 398
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
HG +EA+ + M E V P+
Sbjct: 399 AHGEGNEAIKLLLSMKEEGVDPD 421
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 40/159 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-- 181
H + K G S +++ ++D Y+ + E+ +R+LFDEM ER A WN+MI Y
Sbjct: 47 HAHILKLGHQSDPYIRNVILDMYA-KHSLIEN---ARKLFDEMTERSLADWNSMICGYWK 102
Query: 182 -----------------------------ARLAEL-----LFNKMPAWDIRSWTTMITSY 207
+++ EL F+ MP +I SW +I+ Y
Sbjct: 103 CGNETEACSLFSMTPERNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISGY 162
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+QN EAL FN + G ++ T ATV+S+C+ G
Sbjct: 163 AQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCSSCG 201
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 168 ERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E + +N +I Y++ A+ +F +M D+ S+ ++I ++ + + EA+
Sbjct: 353 ELTISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLLLS 412
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
K+ G D VT VL+AC+H G ++ G + R S + RE LL W +
Sbjct: 413 MKEEGVDPDHVTYIGVLTACSHAGLVEEGSTSNV-TRGFPSSKKAYS--RESQLLNWKHL 469
Query: 283 TEALAIHGFAHEALGMFDRMTYEN 306
+ F +E G F Y N
Sbjct: 470 PTWILSAKFRYELKGEFWSKIYIN 493
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 31/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ +G + +++A+VD Y + ++RR F+ MP + +W +M+ A
Sbjct: 235 VHCRMLVSGSRVDLILESALVDMYGKCGDLW----MARRCFEMMPIKSVVSWTSMLCAQT 290
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A F+ MP +I SW MI+ Y Q Q EALD +N+ + G D++T+
Sbjct: 291 KHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVA 350
Query: 238 VLSACAHLGALDLGRGIQIYCR--------SLGRSLL--------------VFFKLREKN 275
VLSA +G L +G+ + +Y R SL SLL +F ++ +N
Sbjct: 351 VLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRN 410
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ WN I LA+HG A + + F M ++ P+G
Sbjct: 411 VVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDG 446
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 128/326 (39%), Gaps = 85/326 (26%)
Query: 34 LKKCSSIKELECVYATIV---KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
L++C SI+ L ++A ++ +A D LA + + + + + +F + P+
Sbjct: 18 LRQCRSIQRLNQLHAHLLVHGSLSAASDLLLAS-YCALAKAGHGVLCHARRLFDGIPGPD 76
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEVL---------------------LTTVHG 125
+Y+ A+ + P +A+ + MLR +L VHG
Sbjct: 77 RVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHG 136
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ G VFV A++ +Y+ + +SRR FDEM +R +WN+
Sbjct: 137 VALRLGLVGQVFVGNALLHSYASAGSLGDSRR----FFDEMVDRNVVSWNS--------- 183
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
MI Y+Q RE F + ++ G D+ T+ ++L AC+
Sbjct: 184 -----------------MIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQE 226
Query: 246 GALDLGRGIQIYCRSLG---------RSLLV---------------FFKLREKNLLCWNS 281
G L++GR ++CR L S LV F + K+++ W S
Sbjct: 227 GNLEIGR--LVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTS 284
Query: 282 ITEALAIHGFAHEALGMFDRMTYENV 307
+ A HG + A FD M N+
Sbjct: 285 MLCAQTKHGSVNAARCWFDHMPERNI 310
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+++D YA+ ++ LF++M ++ SW +I + + + + + F
Sbjct: 384 NSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFA 443
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D +T +LSAC+H G L+ G+
Sbjct: 444 PDGITFVALLSACSHGGLLETGQ 466
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q+ + GF + F + +VD Y+ +++RV FDEM + +NTMI
Sbjct: 171 VHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRV----FDEMVVKNVVMYNTMITGLL 226
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R A +F M D +WTTM+T +QN EALD F + + G G DQ T +
Sbjct: 227 RCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGS 286
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
+L+AC L A + G+ I Y CRS+ + VF ++ KN
Sbjct: 287 ILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKN 346
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ +G EA+ +F M + ++PN
Sbjct: 347 IISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPN 381
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 122/278 (43%), Gaps = 48/278 (17%)
Query: 82 VFPQMQEPNVFVYHAFSS--LRHPL--QAIAFYLYML-RAEVLLTTVHGQVWKNGFSSPV 136
VF +M NV +Y+ + LR + +A + M+ R + TT+ + +NG S
Sbjct: 206 VFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEA 265
Query: 137 F-------VQTAMVDNYSYSNKFF---------ESRRVSRRLFDEMPERKFATWNTMIDA 180
+ +D Y++ + E +++ + + + ++D
Sbjct: 266 LDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDM 325
Query: 181 YA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ RLAE +F +M +I SWT MI Y QN EA+ F++ + G + T+
Sbjct: 326 YSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTL 385
Query: 236 ATVLSACAHLGALDLG---------RGIQIY-------------CRSLGRSLLVFFKLRE 273
+V+S+CA+L +L+ G G++ Y C S+ + +F ++
Sbjct: 386 GSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPF 445
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + + ++ A G A E + +F++M + V+PNG
Sbjct: 446 HDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNG 483
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 35/190 (18%)
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID--AYARL---AELLF 189
P +V ++ Y+ S + ++RRLFD MP+ T N ++ A+ARL + LF
Sbjct: 44 PTYVLNHLLTAYARSGRL----PLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLF 99
Query: 190 NKMPAWDIRSWTTMITSYSQNKQF------------REALDAFNKTKKSGTGSDQVTMAT 237
MP D S+ +I +S EA+ + + S ++TM+
Sbjct: 100 ASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPS-----RITMSG 154
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
++ A + LG LGR + LG F W+ + + A G +A
Sbjct: 155 MVMAASALGDRALGRQVHCQIMRLGFGAYAF---------TWSPLVDMYAKMGLIGDAKR 205
Query: 298 MFDRMTYENV 307
+FD M +NV
Sbjct: 206 VFDEMVVKNV 215
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF++MP D S+T +++ Y+Q + +E +D F K G + VT VLSAC+
Sbjct: 436 AHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSR 495
Query: 245 LGALDLG 251
G ++ G
Sbjct: 496 SGLVEKG 502
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K GF V+V T +++ Y+ F E+++V FDEMP R TWN I A
Sbjct: 112 LHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQV----FDEMPVRNSVTWNVFITGLA 167
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
+ EL L ++MP + SWTT+I Y++ Q ++AL F G ++T+
Sbjct: 168 KWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLL 227
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG---------RSLL--------------VFFKL-- 271
+ A ++LGAL++ + I Y G SLL VF ++
Sbjct: 228 AIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASRVFGEIDA 287
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W SI A A+HG A EAL F+RM E ++PN
Sbjct: 288 KSRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPN 326
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 55/197 (27%)
Query: 82 VFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+ +M P V + ++ + P QA+A +L M E + T
Sbjct: 178 LLDEMPMPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLG 237
Query: 123 -------VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+H K+G +S + ++T+++D Y+ + RV F E
Sbjct: 238 ALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASRV----FGE--------- 284
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
IDA +R ++ SWT++I++++ + +EAL+ F + +K +++T
Sbjct: 285 ---IDAKSR------------NLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 235 MATVLSACAHLGALDLG 251
+VL+AC+H G ++ G
Sbjct: 330 FLSVLNACSHGGLVEEG 346
>gi|302822511|ref|XP_002992913.1| hypothetical protein SELMODRAFT_136241 [Selaginella moellendorffii]
gi|300139258|gb|EFJ06002.1| hypothetical protein SELMODRAFT_136241 [Selaginella moellendorffii]
Length = 510
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 141/335 (42%), Gaps = 63/335 (18%)
Query: 34 LKKCSSIKEL---ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
L++C + L + V+A I D FL + R +D F ++ E N
Sbjct: 62 LQECGRLNALAAGKLVHAHIRSMRLEHDRFLGNLVVDM-YGRCGRLDEAAAAFQEIHEKN 120
Query: 91 VFVYH--------------AFSSLR----HPLQA--IAFY--LYMLRAEVLLTTVHGQVW 128
VF ++ A L+ H ++A + F L A LL V
Sbjct: 121 VFSWNIWIGANAMNGQSMAALELLKKMELHGIKATRVTFLNALSACAAPELLAQARSIVE 180
Query: 129 K---NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-- 183
K G V V TA+V Y+ +R V FD MP R +WN MI+AYA+
Sbjct: 181 KITAAGMDRDVLVATAVVSAYARCGAMASAREV----FDAMPARNIVSWNAMIEAYAQHG 236
Query: 184 ------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
A +F+ + S + MIT+ +QN +REAL+ + + ++ G S+ +T +
Sbjct: 237 RGADAIAARQVFDSIAPRTAISCSVMITTLAQNGFYREALELYREMQEEGLESNNMTFLS 296
Query: 238 VLSACAHLGALDLGRGIQ------------------IY----CRSLGRSLLVFFKLREKN 275
+L A AHL AL GR I +Y C SL + VF + KN
Sbjct: 297 LLEASAHLTALGQGRRIHASIIDYGLARDLLIQTALVYMYGKCASLDEAREVFESMERKN 356
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W SI A + HG E+L +F RM + V PN
Sbjct: 357 VVAWTSIIAAYSQHGHCEESLELFRRMALDGVMPN 391
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ + G S ++++ ++ + RR+ + D R ++ Y + A
Sbjct: 281 EMQEEGLESNNMTFLSLLEASAHLTALGQGRRIHASIIDYGLARDLLIQTALVYMYGKCA 340
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
L +F M ++ +WT++I +YSQ+ E+L+ F + G ++VT T+LS
Sbjct: 341 SLDEAREVFESMERKNVVAWTSIIAAYSQHGHCEESLELFRRMALDGVMPNEVTYGTLLS 400
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
C+H G +D + Y F +++ L + + +AL G EA + +
Sbjct: 401 TCSHAGLVD-----EAYDN--------FVEMKNPRLTHYRCMVDALGRAGKLDEAEDLLN 447
Query: 301 RMTYE 305
M +E
Sbjct: 448 NMPFE 452
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 35/211 (16%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT---WNTMIDAYARLAEL 187
GF FV+TA++D ++ + ++F+++ K+ + WN MI AYAR+ +L
Sbjct: 298 GFRPNYFVKTALLDMHAKCGNL----EAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDL 353
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSA 241
LF+KMP D SW +MI Y+QN + +A+ F + S + D+VTM +V SA
Sbjct: 354 PSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSA 413
Query: 242 CAHLGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKNLLCW 279
C HLG L LG I +Y C S+ ++L+F ++ ++L+ +
Sbjct: 414 CGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSY 473
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ A HG E++ + +M + + P+
Sbjct: 474 NTLISGFAEHGHGMESIELLLKMKEDGIEPD 504
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 133/360 (36%), Gaps = 97/360 (26%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+ K +++ L ++A +V + + ++ CT YT +F P+V V
Sbjct: 10 VSKITNLHRLRQLHAQLVHHSLHHQNHWVVLLLTQCTRLLAPSSYTCHIFHAATHPDVRV 69
Query: 94 YH---------------AFSSLRHPLQA------IAFYLYMLRA---EVLLTTVHGQVWK 129
+ S +H L+ +FY M+++ E +L H V K
Sbjct: 70 FTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSESMLFLAH--VLK 127
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-------- 181
+G+ +V+ ++ Y+ + +R+LFDEMP+R A WN MI Y
Sbjct: 128 SGYDRDHYVRNGILGIYAK----YGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEE 183
Query: 182 --------------------------------ARLAELLFNKMPAWDIRSWTTMITSYSQ 209
+ A + F+KMP + SW M++ Y+Q
Sbjct: 184 ASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQ 243
Query: 210 NKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGI-------------- 254
E + FN G D+ T TV+S+C+ LG L I
Sbjct: 244 GGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNY 303
Query: 255 ---------QIYCRSLGRSLLVFFKL---REKNLLCWNSITEALAIHGFAHEALGMFDRM 302
C +L + +F +L + ++ + WN++ A A G A +FD+M
Sbjct: 304 FVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKM 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+ +N++I Y+R A L+F +M D+ S+ T+I+ ++++ E+++ K K+
Sbjct: 439 ISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKE 498
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR 252
G D++T +L+AC+H G L G+
Sbjct: 499 DGIEPDRITYIAILTACSHAGLLGEGQ 525
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 76/295 (25%)
Query: 92 FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHGQVWK 129
+ HA SSL A+A + MLR V VHG ++
Sbjct: 86 YARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVREGIQVHGFLFS 145
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SRRL 162
G V A+VD Y + ++RRV R +
Sbjct: 146 AGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDV 205
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
FD M ER +WNT++ Y R E LF +MP ++ SW +I + SQ + +A+
Sbjct: 206 FDRMAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAV 265
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG--------RG------------IQIY 257
+ FN+ + + D TMA ++SACA LG+L + +G I +Y
Sbjct: 266 EVFNRMRLARFQPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLIDMY 325
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++ L+F + R K+ + +N + ALA HG +AL +FD M+ E ++P+
Sbjct: 326 AKCGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPD 380
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E F N++ID YA+ A LLF + D S+ MI + +Q+ R+AL F++
Sbjct: 312 EMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDALQIFDE 371
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ G D VT VLSACAH G + G+
Sbjct: 372 MSEEGLQPDAVTFLGVLSACAHAGLVHDGK 401
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 27/176 (15%)
Query: 162 LFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
LF+ MPER +W+TM+ Y + +A +LF++MP ++ SWT +++ Y+ ++A
Sbjct: 65 LFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDA 124
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI-------------------- 256
+ +F + +++G D T+ ++L++CA G L LG+ +
Sbjct: 125 IRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDM 184
Query: 257 --YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + R+L VF + +K+L+ WN + + LA+HG +AL +F M E RP+
Sbjct: 185 YAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPD 240
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
RLF M ER +WN+MI ++ EL LF++MP D SW T++ Y + + +
Sbjct: 2 RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A F + V+ +T++S G +++ R ++F ++ KN
Sbjct: 62 AFGLFESMPERNV----VSWSTMVSGYCKAGDMEMAR-------------MLFDRMPVKN 104
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ W I A+ G A +A+ F++M ++P+
Sbjct: 105 LVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPD 139
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ ++ +FN M D+ SW M+ + + +AL F+ ++ G
Sbjct: 179 NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFR 238
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT+ VL AC H G +D G
Sbjct: 239 PDKVTLVAVLCACVHAGFVDEG 260
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K GF V+V T +++ Y+ F E+++V FDEMP R TWN I A
Sbjct: 112 LHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQV----FDEMPVRNSVTWNVFITGLA 167
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
+ EL L ++MP + SWTT+I Y++ Q ++AL F G ++T+
Sbjct: 168 KWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLL 227
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG---------RSLL--------------VFFKL-- 271
+ A ++LGAL++ + I Y G SLL VF ++
Sbjct: 228 AIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAA 287
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W SI A A+HG A EAL F+RM E ++PN
Sbjct: 288 KGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPN 326
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 176 TMIDAYARL-----AELLFNKMPA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+++D YA+ A +F ++ A ++ SWT++I++++ + +EAL+ F + +K
Sbjct: 264 SLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECL 323
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+++T +VL+AC+H G ++ G
Sbjct: 324 KPNRITFLSVLNACSHGGLVEEG 346
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 30/183 (16%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R++FDEMP R +WN M+ YA E+ LF+ MP D+ SWT MI+ Y+Q +
Sbjct: 242 LARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGR 301
Query: 213 FREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCR----------SL 261
+ + L+ F + G ++VTM +VLSACAHL AL+ GR ++ +L
Sbjct: 302 YAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNL 361
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G +L+ +F L +KN+ WN++ LA++ A + +F++M
Sbjct: 362 GAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEE 421
Query: 308 RPN 310
+P+
Sbjct: 422 KPD 424
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+ +F +ID YA+ LA +F+ + ++ +W +IT + N R +D F +
Sbjct: 356 DNEFNLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQ 415
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
K S D +T +VL+ACAH G +D GR
Sbjct: 416 MKMSEEKPDDITFVSVLTACAHAGLVDEGR 445
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAY 181
V+ Q + GF + FV +++ Y+ F R +F+ E +WNT++ Y
Sbjct: 115 VYAQAARRGFLADTFVVNSLLAMYAA----FRDTASMRAVFESCAEVADVVSWNTVVFGY 170
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ E+ +F++MP + SW+ M+ +Y+ + A + F++ G + +T
Sbjct: 171 AKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDRMP--AIGRNIITWN 228
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+++ G L L R + F ++ +N++ WN++ A++G A
Sbjct: 229 LMVTGFGRHGLLPLARKM-------------FDEMPIRNIVSWNAMLRGYAMNGEMDVAR 275
Query: 297 GMFDRMTYENV 307
+FD M ++V
Sbjct: 276 ELFDVMPEKDV 286
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 149/356 (41%), Gaps = 84/356 (23%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF 97
+++ +L ++A I N + + Q IS S +DY + +F PN+FV++A
Sbjct: 51 NTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCS-LKSLDYALSIFRCFDHPNLFVFNAL 109
Query: 98 S----------------------SLRHPLQAIAFYLYMLRAEV---LLTTVHGQVWKNGF 132
S+R + F L + A V L +HG V K G
Sbjct: 110 IRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL 169
Query: 133 SSPVFVQTAMVDNYSYSNK-------FFESRRVSR------------------------R 161
FV+ ++VD Y + F ES + ++
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAAS 229
Query: 162 LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREA 216
LF+ MPER +WN++I+ + R +L LF +MP ++ SWTTMI +SQN +A
Sbjct: 230 LFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKA 289
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC--------RSLGRSLL-- 266
L F + + G + +T+ + L AC +GAL +G I Y R +G +L+
Sbjct: 290 LSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDM 349
Query: 267 ------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + + K+LL W+ + AIHG +AL F +M + P+
Sbjct: 350 YAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPD 405
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 76 IDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVL---LTTVHGQVW 128
+D +F QM E NV + + FS +A++ + ML V LT V +
Sbjct: 255 LDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLA 314
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
+ + NY SN F +R + ++D YA+ +
Sbjct: 315 CTKIGA--LQVGERIHNYLSSNGFQLNRGIG---------------TALVDMYAKCGNIK 357
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
+F + D+ +W+ MI ++ + F +AL F K K +G D+V +L+AC+
Sbjct: 358 SASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACS 417
Query: 244 HLGALDLG 251
H G +D G
Sbjct: 418 HSGNVDQG 425
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 33/208 (15%)
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA-TWNTMIDAYARLAEL--- 187
F S FV+TA++D ++ V++++F+++ K + TWN MI AYAR+ +L
Sbjct: 295 FRSNYFVKTALLDMHAKCGNL----EVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLA 350
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSACAH 244
LFNKMP + SW +MI Y+QN + +A+ F + S + D+VTM +V SAC H
Sbjct: 351 RDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGH 410
Query: 245 LGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKNLLCWNSI 282
LG L LG I Y C S+ + + F ++ K+L+ +N++
Sbjct: 411 LGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTL 470
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
LA HG E++ + +M + + P+
Sbjct: 471 ISGLAAHGHGTESIKLMSKMKEDGIGPD 498
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 140/361 (38%), Gaps = 93/361 (25%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV 91
N K +++ L ++A +V + + ++ CT +YT +F PNV
Sbjct: 8 NIASKITNLHHLRQLHAQLVLHSQHHHNHWVALLLTQCTHLLAPSNYTSHIFRAATYPNV 67
Query: 92 FVYHA----FSSLRHPLQAI-----------------AFYLYMLR----AEVLLTTVHGQ 126
V+ +S + Q + +FY +++ A +LL H
Sbjct: 68 HVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIKSAGKAGMLL---HAY 124
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN----------- 175
+ K G S V+ A++ Y+ + ++R+LFDEMP+R A WN
Sbjct: 125 LLKLGHSHDHHVRNAIMGIYAK----YGCIELARKLFDEMPDRTAADWNVIISGYWKCGN 180
Query: 176 ----------------------TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYS 208
TM+ +A++ A + F++MP + SW M++ Y+
Sbjct: 181 EKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYA 240
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI-------------- 254
Q+ +E + F+ SG D+ T TVLS+C+ LG L I
Sbjct: 241 QSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYF 300
Query: 255 --------QIYCRSLGRSLLVFFKLRE-KNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C +L + +F +L KN + WN++ A A G A +F++M
Sbjct: 301 VKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPER 360
Query: 306 N 306
N
Sbjct: 361 N 361
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+ +N++I Y R A + F +M D+ S+ T+I+ + + E++ +K K+
Sbjct: 433 ISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKE 492
Query: 226 SGTGSDQVTMATVLSACAHLGALDLG 251
G G D++T VL+AC+H G L+ G
Sbjct: 493 DGIGPDRITYIGVLTACSHAGLLEEG 518
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + GF +V T++++ Y ++R FDEMP + +WN MI +A
Sbjct: 116 LHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMA----FDEMPVKNVVSWNVMITGFA 171
Query: 183 RLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
E LLF +MP+ ++ SWT +I Y+++ EA+ + G ++T+
Sbjct: 172 GRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVLA 231
Query: 238 VLSACAHLGALDLGRGIQIYCRS--------LGRSLLVFFK---------------LREK 274
V+ A + +G + +G + YC +G SL+ + L +
Sbjct: 232 VVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNRR 291
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL+ W SI A+HG + EA+ +F M +RPN
Sbjct: 292 NLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPN 327
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 54/201 (26%)
Query: 76 IDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLT---------- 121
I+Y L+F +M NV + ++ H ++A+A M+ + T
Sbjct: 176 IEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVLAVVPA 235
Query: 122 -----------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
T+HG KNG + V +++D Y+ S + S ++F M R+
Sbjct: 236 ISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAK----IGSIQSSLKVFHGMLNRR 291
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ SWT++I+ ++ + EA++ F + ++SG
Sbjct: 292 -------------------------NLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRP 326
Query: 231 DQVTMATVLSACAHLGALDLG 251
++VT +VL+AC+H G ++ G
Sbjct: 327 NRVTFLSVLNACSHGGLVEQG 347
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS ++R V FD M + TW
Sbjct: 79 SETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLV----FDYMEDINSVTW 134
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F+KMP D+ SWT MI + + EAL F + + SG
Sbjct: 135 NTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVR 194
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR----SLGRSL 265
D V + L+AC +LGAL G I +YCR R
Sbjct: 195 PDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFARE- 253
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF K+ ++ ++ WNS+ A +G AHE+L F +M E +P+
Sbjct: 254 -VFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPD 297
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++ G
Sbjct: 236 NSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFK 295
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 296 PDAVTFTGALTACSHVGLVEEG 317
>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 467
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 36/221 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HGQ ++ G FVQT+ V Y + SR++FD++ + N+++DA
Sbjct: 108 LHGQAFRRGVLWDPFVQTSFVRFYGEVGDL----KSSRKMFDDILDPCVVACNSLLDACG 163
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN---KTKKSGTGSDQVT 234
R E+ LF KMP D+ SWTT+I +S+N +AL F + +++ ++ T
Sbjct: 164 RNGEMNSAFELFQKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEAT 223
Query: 235 MATVLSACAHL--GALDLGRGIQIYCRS--------LGRSLL--------------VFFK 270
VLS+CA+ G + LG+ I Y + LG +LL +F +
Sbjct: 224 FVCVLSSCANFDQGGIRLGKQIHGYILTKEIILTPILGTALLDMYGKAGDLEMALTIFHQ 283
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+R+K + WN+I ALA +G + L MF+ M NV PNG
Sbjct: 284 IRDKKVCAWNAIIPALASNGRPKQTLEMFEMMKSSNVHPNG 324
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D Y + +L +F+++ + +W +I + + N + ++ L+ F K S +
Sbjct: 264 LLDMYGKAGDLEMALTIFHQIRDKKVCAWNAIIPALASNGRPKQTLEMFEMMKSSNVHPN 323
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY 257
+T+ +L+ACA +DL GIQ++
Sbjct: 324 GITLLAILTACARYKLVDL--GIQLF 347
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 80/297 (26%)
Query: 64 QFISFCT-SRFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYL------- 111
+ I FC S + IDY +F Q+Q PN+F +++ S + P +
Sbjct: 27 KIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRG 86
Query: 112 ----------YMLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155
++L+A +++ VH V K+GF S FV+TA+V+ Y+
Sbjct: 87 YPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIV-- 144
Query: 156 RRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
++ ++FDE+ +R +W+TMI+ Y++ E
Sbjct: 145 --LASKVFDEITDRNLV--------------------------AWSTMISGYARIGLVNE 176
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------ 257
AL F +K+G D+VTM +V+SACA GALD G+ + Y
Sbjct: 177 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 236
Query: 258 ----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + R+ VF + K+ W+S+ LAI+G A +AL F RM V+PN
Sbjct: 237 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 293
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 19/227 (8%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS + LE V+A ++K+ F+ ++F ++ I VF ++ + N
Sbjct: 99 LKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNF-YAKCEDIVLASKVFDEITDRN 157
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ + S + + L + R + K G +++ + S
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFR----------DMQKAGVVPDEVTMVSVISACAASG 207
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMIT 205
+ V + ++ E +++ YA+ A+ +F+ MP D ++W++MI
Sbjct: 208 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 267
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ N +AL+ F + +++ + VT VLSACAH G + GR
Sbjct: 268 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGR 314
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 58/274 (21%)
Query: 90 NVFVYHAFSS---LRH-PLQAIAFYLYMLRAEVLLTT----------------------- 122
N+F+Y++ L H P +AI YL ML +L
Sbjct: 348 NIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCL 407
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V GF FV +A+++ YS + F+ +R LFD +P R W MID Y
Sbjct: 408 VHAHVVTFGFDEDPFVVSALIEFYSLN---FD-MGTARTLFDRIPNRDVVLWTAMIDGYG 463
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ A +LF MP + SW+ ++ +YS+ F+E L F + +++GT ++ + +
Sbjct: 464 KMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVS 523
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VL+ACAHLGAL G + Y C + +L F + K+
Sbjct: 524 VLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKD 583
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
WN++ +A++G A ++L +F++M +P
Sbjct: 584 AGAWNAMISGVAMNGDAWKSLELFNKMISNGTQP 617
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
F +P D +W MI+ + N ++L+ FNK +GT + T VL+AC H
Sbjct: 576 FQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTH 631
>gi|218191188|gb|EEC73615.1| hypothetical protein OsI_08110 [Oryza sativa Indica Group]
Length = 289
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 115/258 (44%), Gaps = 39/258 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L +C+++ L+ ++A V T + F + R + Y +F PNVF+
Sbjct: 17 LHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPGPNVFL 76
Query: 94 YHAFSSL---------RHPLQAIAFYLYMLR---------------------AEVLLTTV 123
Y A S H ++A +L MLR L+ ++
Sbjct: 77 YSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSI 136
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H K+GF F++T+++D YS ++R+ LFD + +R +W ++ YAR
Sbjct: 137 HCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARK----LFDGLTDRNVVSWTALVSGYAR 192
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ LF +MP D+ +W +I +QN F EA+ F + G + T++ +
Sbjct: 193 AGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCL 252
Query: 239 LSACAHLGALDLGRGIQI 256
LSAC HLG L +G+ + I
Sbjct: 253 LSACGHLGMLKIGKDLSI 270
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 27/182 (14%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNK 211
++ +++ M + + M+ YA+ +A +FN M D+ SW+ MI++Y++N
Sbjct: 146 EMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENN 205
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
Q E L+ FNK + G D++TM +V+SACA++G+LD R I
Sbjct: 206 QPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICN 265
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C SL +L +F + KN++ W S+ A A+HG AL +F +M E V P
Sbjct: 266 ALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEP 325
Query: 310 NG 311
NG
Sbjct: 326 NG 327
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG + G FV TA+V Y+ + E+RRV FD MPER
Sbjct: 16 HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRV----FDGMPER-------------- 57
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
D+ +W M+ SY + +RE L NK K+S DQV +ATVLS C
Sbjct: 58 ------------DLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCG 105
Query: 244 HLGALDLGRGIQIY 257
H L G+ I Y
Sbjct: 106 HTRHLRSGKTIHSY 119
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +++ L +FN MP ++ +WT+MI +++ + AL F + K G
Sbjct: 265 NALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVE 324
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
+ VT +L AC H G + G RSL +L +++ K+ + + + +
Sbjct: 325 PNGVTFLVLLYACCHAGLVYEG-------RSLFECMLQEYRIEPKHEH-YGCMVDLMGRA 376
Query: 290 GFAHEALGMFDRMTYENVRPN 310
EA+ + + M ++RPN
Sbjct: 377 KLMQEAVDLIESM---HIRPN 394
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 31/207 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V +G + V A++D Y+ ++ + LF+ M R +W ++I +
Sbjct: 145 VHKCVVASGVLPDLKVGNALIDMYAECSEM----DAAWELFEGMEVRNTVSWTSVISGFL 200
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
RL ++ LF+ MP D SWT MI Y Q QFREAL+ F + + S +D+ TM +
Sbjct: 201 RLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVS 260
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V++ACA LGAL+ G +IY C S+ ++L VF ++ ++
Sbjct: 261 VVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRD 320
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRM 302
W ++ LA++G EA+ MF RM
Sbjct: 321 KFTWTAVILGLAVNGHGEEAINMFYRM 347
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y++ + +F +M D +WT +I + N EA++ F + +
Sbjct: 294 NALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEA 353
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+VT VL+AC H G +D GR
Sbjct: 354 PDEVTFIGVLTACTHAGLVDKGR 376
>gi|255550516|ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544538|gb|EEF46055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 599
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 49/270 (18%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130
+R D +F +M EPN+ Y++ I+ L +LR VHG
Sbjct: 84 ARVGLFDNARDLFDKMPEPNLISYNSL---------ISGSLDLLRQ------VHGAAILI 128
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
G V V A++D+Y + S + R+F ER +W +M+DAYAR + +
Sbjct: 129 GLEFNVIVYNALIDSYGKCGQHNTSYCIFSRMF----ERDVVSWTSMVDAYARASRMDDA 184
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF +MP + SWT++I +++N +AL+ F + ++ T TVL ACA L
Sbjct: 185 FRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPSAFTFVTVLGACADL 244
Query: 246 GALDLGRGIQIY-CRSLGRSLL------------------------VFFKLREKNLLCWN 280
++ G+ I + RS GR+ L +F + EK+++ WN
Sbjct: 245 ALIERGKQIHGHIIRSSGRTDLFNMYVYNALIDMYCKCGDMKSSKSLFEGMSEKDIVSWN 304
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ LA +G A E+L +F +M N PN
Sbjct: 305 SLITGLAQNGHAEESLDLFRKMVEGNRLPN 334
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+N +ID Y + ++ LF M DI SW ++IT +QN E+LD F K +
Sbjct: 272 YNALIDMYCKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNR 331
Query: 229 GSDQVTMATVLSACAHLG 246
+ VT + VLSAC+H G
Sbjct: 332 LPNHVTFSGVLSACSHTG 349
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L T+H + K F ++D YS N +++V FD+ P + +WNTMI
Sbjct: 25 LGLTLHSFLIKTALICSPFFSNRVMDLYSKFNVIDSAQKV----FDDNPIKNIHSWNTMI 80
Query: 179 DAYARL-----AELLFNKMPAWDIRSWTTMIT-SYSQNKQFREA---------------- 216
YAR+ A LF+KMP ++ S+ ++I+ S +Q A
Sbjct: 81 GGYARVGLFDNARDLFDKMPEPNLISYNSLISGSLDLLRQVHGAAILIGLEFNVIVYNAL 140
Query: 217 LDAFNKTKKSGTG---------SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLV 267
+D++ K + T D V+ +++ A A +D + +
Sbjct: 141 IDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYARASRMD-------------DAFRL 187
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ KN + W S+ A +G +++AL +F +M ENV P+
Sbjct: 188 FMEMPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPS 230
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K+GF S ++V ++++ S F +R++F++M ER +W +++ YA
Sbjct: 200 VHGMVVKSGFESNLYVGNSVINMCS----VFARMEDARKVFNQMSERDVFSWTSLLGGYA 255
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
+ E+ LFN MP + SW MI+ + ++ EAL F N ++ +
Sbjct: 256 KHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLV 315
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG--------RSLL--------------VFFKLREK 274
VLSACAHLGALD G I +Y +G +L+ VF + ++
Sbjct: 316 CVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKR 375
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++L + S+ L+ HG +AL +F +M ENV PN
Sbjct: 376 DVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPN 411
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 163 FDEMPERKFATWNT-MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREA 216
D++ R+ + +T +ID YA+ + +FN + D+ S+T+MI+ S + ++A
Sbjct: 337 IDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDA 396
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL 261
L F + +++T+ VL+ C+H G ++ G I SL
Sbjct: 397 LRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESL 441
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 131/303 (43%), Gaps = 62/303 (20%)
Query: 64 QFISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLR 115
Q I F HF + Y I +F +QEPN+ ++ HA +S + A+ Y+ M+
Sbjct: 1 QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNS--DSVTALKLYVCMIS 58
Query: 116 AEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+L + +HG V K G+ ++V T+++ Y+ + + +
Sbjct: 59 LGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLED 118
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
+ +V FD R ++ +I YA A LF+++ D+ SW MI+ Y +
Sbjct: 119 AHKV----FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVE 174
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG---------------- 253
F+EAL+ + K+ D+ TM TV+SACA G+++LGR
Sbjct: 175 TCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKI 234
Query: 254 ----IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
I +Y C + + +F L +K+++ WN++ EAL +F M
Sbjct: 235 VNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE 294
Query: 308 RPN 310
PN
Sbjct: 295 SPN 297
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 33/189 (17%)
Query: 155 SRRVSRRLFDEMPERKFAT----WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
S + R+L + + F + N +ID Y++ E+ LF + D+ SW T+I
Sbjct: 212 SIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIG 271
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------- 257
++ ++EAL F + +SG + VTM +VL ACAHLGA+D+GR I +Y
Sbjct: 272 GHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGV 331
Query: 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
C + + VF + ++L WN++ A+HG A+ A +F +
Sbjct: 332 TNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSK 391
Query: 302 MTYENVRPN 310
M + P+
Sbjct: 392 MRKNGIDPD 400
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ M + SW MI ++ + + A D F+K +K+G
Sbjct: 340 SLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP 399
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR I RS+ + + KL + + + L G
Sbjct: 400 DDITFVGLLSACSHSGMLDLGRHI---FRSMSQDYKITPKLEH-----YGCMIDLLGHCG 451
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M M E P+G
Sbjct: 452 LFKEAKEMIRTMPME---PDG 469
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 144/325 (44%), Gaps = 64/325 (19%)
Query: 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----- 96
+L ++A ++ N + F+S C S + + Y +F Q Q P + +++A
Sbjct: 24 QLREIHAHFLRHGLNQLNQILSHFVSICGS-LNKMAYANRIFKQTQNPTIILFNAMIKGY 82
Query: 97 ------------FSSLRH-----------PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133
FSS+++ PL L +L+ L +H +V GF
Sbjct: 83 SLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQ---LGKCMHKEVLVVGFE 139
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----L 188
++ +++ YS ++ +V FDEM +R WN MI + + ++ L
Sbjct: 140 GFSAIRIGVIELYSSCGVMEDAEKV----FDEMYQRDVIVWNLMIHGFCKRGDVDMGLCL 195
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F +M + SW MI+ +Q+++ EAL F+ G D+ T+ TVL CA LG++
Sbjct: 196 FRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSV 255
Query: 249 DLGRGIQIYCRS---------LGRSLL--------------VFFKLREKNLLCWNSITEA 285
D+G+ I Y +S +G +L+ VF ++ KN++ WN++
Sbjct: 256 DVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISG 315
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
LA++G + + + M E VRPN
Sbjct: 316 LALNGNGELGVELLEEMMNEGVRPN 340
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 32/191 (16%)
Query: 76 IDYTILVFPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYMLR-----AEVLLTTVHGQ 126
+D + +F QM++ +V ++ S R +A+ + ML E + TV
Sbjct: 189 VDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTV--- 245
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR--- 183
P+ + VD + + + +S + R A N ++D Y +
Sbjct: 246 -------LPICARLGSVDVGKWIHSYAKSSGLYRDFV--------AVGNALVDFYNKSGM 290
Query: 184 --LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
A +F++MP ++ SW T+I+ + N ++ + G + T VLS
Sbjct: 291 FETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSC 350
Query: 242 CAHLGALDLGR 252
CAH G + GR
Sbjct: 351 CAHAGLFERGR 361
>gi|449491452|ref|XP_004158900.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 547
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 56/288 (19%)
Query: 70 TSRFHFIDYTILVFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT--- 122
S F I YT+L+F ++ PN F V A+S PL+A+ Y L + +
Sbjct: 92 ASEFGDIVYTVLIFRHIKVPNTFCVNRVIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTF 151
Query: 123 ------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
HGQ +KNG S + + +++ Y + R++FD
Sbjct: 152 LSLFSACASFGCGASGRKCHGQAFKNGVDSVMVLGNSLIHMYGCCKHI----ELGRKVFD 207
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
EM + +WN+++ AYAR+ +L +F+ MP ++ SW MI+ Y + A+
Sbjct: 208 EMSTQDLVSWNSIVTAYARVGDLYTAHDMFDVMPERNVVSWNLMISEYLRGGNPGCAMKL 267
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------- 257
F G + TM VLSAC+ L+ GR + +
Sbjct: 268 FRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRSVHGFMYRASMKFCVFINTALVDMYSK 327
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C + + VF +L +NL+ WN++ ++HG + L +F+ M E
Sbjct: 328 CHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGNPKDGLELFEEMVGE 375
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VHG +++ VF+ TA+VD YS ++ V+RR+FD + R TWN MI +
Sbjct: 301 SVHGFMYRASMKFCVFINTALVDMYSKCHRV----SVARRVFDRLMIRNLVTWNAMILGH 356
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQ-NKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+ + P + + M+ + N++ K DQ+T VL
Sbjct: 357 S------LHGNPKDGLELFEEMVGELREINEETGNGKKFKQDEGKRKVFPDQITFIGVLC 410
Query: 241 ACAHLGAL 248
ACA G L
Sbjct: 411 ACARAGLL 418
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------- 253
+I +YS + EA+ + + +G D T ++ SACA G GR
Sbjct: 119 VIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNG 178
Query: 254 -----------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
I +Y C+ + VF ++ ++L+ WNSI A A G + A MFD
Sbjct: 179 VDSVMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMFD 238
Query: 301 RMTYENV 307
M NV
Sbjct: 239 VMPERNV 245
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
T+H + + + + + AM+D Y +R +F+ M R +W ++++ Y
Sbjct: 274 TLHEHIRRKDITCSLNLLNAMLDMYVKCGCL----TTAREIFNNMERRDVFSWTSLLNGY 329
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTM 235
A+ +L LF++MP +I SW MI YSQN Q EAL+ F N G + T+
Sbjct: 330 AKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTL 389
Query: 236 ATVLSACAHLGALDLGR----------GIQIY-------------CRSLGRSLLVFFKLR 272
VLSA LG L++G+ GIQ+ C S+ + +F +
Sbjct: 390 VCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMP 449
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
EKNL+ WNS+ A A +G A +AL +FD+M ++P+
Sbjct: 450 EKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPD 487
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 126/322 (39%), Gaps = 78/322 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+ CSS+ +L+ + A I T F A + ++FC S I Y L+F Q + PN F
Sbjct: 59 LQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCF 118
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLR---------------------AEVLLTTVHGQV 127
++ + HP +F+ M+R +++ VH +
Sbjct: 119 FWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVI 178
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
WK GF S +FVQ ++ NY + +R++FDE + TW TMI+ YAR
Sbjct: 179 WKRGFDSDLFVQNGLIQNYVETGCL----GFARQMFDESSVKDVVTWTTMINGYAR---- 230
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
N EA+ FN S ++VTM +LSAC+ G
Sbjct: 231 ----------------------NNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGD 268
Query: 248 LDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEA 285
++G+ + + C L + +F + +++ W S+
Sbjct: 269 SEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNG 328
Query: 286 LAIHGFAHEALGMFDRMTYENV 307
A +G A +FD M N+
Sbjct: 329 YAKNGDLGSARKLFDEMPERNI 350
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + LF+ MP ++ SW +MI++Y+ ++AL F++ SG
Sbjct: 426 NAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLK 485
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D +T VLSAC++ G + G+
Sbjct: 486 PDHITFIGVLSACSYGGFVSEGQ 508
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G S V V TA++ YS R +R +FD M ++ TW
Sbjct: 85 SEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHV----RKARLVFDYMEDKNSVTW 140
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F++MP D+ SWT MIT + + EAL F + + SG
Sbjct: 141 NTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVN 200
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLV 267
D V + L+AC +LGAL G I +YCR + + V
Sbjct: 201 PDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQV 260
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + ++ ++ WNS+ A +G A+E+L F +M E +P+
Sbjct: 261 FDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPD 303
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+ M + SW ++I ++ N E+L F K ++ G
Sbjct: 242 NSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFK 301
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 302 PDAVTFTGALTACSHVGLVEEG 323
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 139/307 (45%), Gaps = 49/307 (15%)
Query: 34 LKKCSSI---KELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
+K C+ + KE + ++ ++K L+ F++ ++ S+ ID VF M + +
Sbjct: 114 IKGCARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNM-YSKCKDIDSAKKVFLSMDDKD 172
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
+ +++ I Y+ + E+ + ++++ +F T ++D +S
Sbjct: 173 LVSWNSL---------IDGYVKCGQVELGM-----KLFEEMPERDLFSWTVLIDGFSKCG 218
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMIT 205
K V+R LFD+MP R +WN MI+ Y + LA LF+KMP ++ SW +M+
Sbjct: 219 KV----DVARELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVA 274
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------- 257
Y N++F+EALD F + + T+ + SA + L +L G+ + Y
Sbjct: 275 GYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQL 334
Query: 258 --------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
C ++ +L VF + +K L W +I L +HG A AL F M
Sbjct: 335 DGVLATSLINMYSKCGNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMC 394
Query: 304 YENVRPN 310
+RP+
Sbjct: 395 RTGMRPH 401
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 130/307 (42%), Gaps = 51/307 (16%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVF 92
LK + KE + ++A VKTN ++ +S + + + ++Y + +F ++QEP +
Sbjct: 15 LKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPALV 74
Query: 93 VYHA-----------------FSSLRHPLQAIAFYL-------YMLRAEVLLTTVHGQVW 128
+Y+ FS L H F L L A +HG V
Sbjct: 75 LYNILIKCYIQNQLSHDAITLFSQLLHEFNPDGFTLPCVIKGCARLHATKEGKQIHGLVL 134
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K GF FV +++V+ YS +++V F M ++ +WN++ID Y + ++
Sbjct: 135 KLGFGLNKFVSSSLVNMYSKCKDIDSAKKV----FLSMDDKDLVSWNSLIDGYVKCGQVE 190
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF +MP D+ SWT +I +S+ + A + F+K S + + A
Sbjct: 191 LGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGD 250
Query: 244 HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
+ A +L F K+ EKNL+ WNS+ ++ EAL +F M
Sbjct: 251 FVLASEL-----------------FDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTML 293
Query: 304 YENVRPN 310
+ PN
Sbjct: 294 ERDFTPN 300
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 60/306 (19%)
Query: 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSS 99
+C ++ ++K+ D + I+ SR + VF ++ E ++ ++ +S
Sbjct: 146 QCAHSGVLKSGLCADGHVRHSLITM-YSRCGELGCARRVFDEISEKDLVSWNSMISGYSR 204
Query: 100 LRHPLQAIAFYLYMLRA-----EVLLTTVHGQVWKNG-FSSPVFVQTAMVDNYSYSNKFF 153
+ + A+ + M A E+ L ++ G G +++ +V+N N F
Sbjct: 205 MGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFV 264
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
S +I Y + +L +F++M D+ +W MIT Y+
Sbjct: 265 GS--------------------ALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYA 304
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQ--IY 257
QN EA+ F+ ++SG D++T+ VLSACA +GALD G RG+Q IY
Sbjct: 305 QNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIY 364
Query: 258 -----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C SL +L VF + +KN + WN++ ALA HG E+L +F RM+ E
Sbjct: 365 VSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEG 424
Query: 307 --VRPN 310
VRPN
Sbjct: 425 GAVRPN 430
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 83/325 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
LK+C+S K L+ ++ ++ + FL +FI + L+F Q+ PN +
Sbjct: 38 LKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKD-----FNNASLLFSQIPYPNEYA 92
Query: 94 YH-AFSSLRHPLQ----AIAFYLYM----------------LRAEVLLTTVHGQ-----V 127
++ L Q I FY M + LL HGQ V
Sbjct: 93 FNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGV 152
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K+G + V+ +++ YS + +RR+FDE+ E+ +WN+MI Y+R+
Sbjct: 153 LKSGLCADGHVRHSLITMYSRCGEL----GCARRVFDEISEKDLVSWNSMISGYSRMG-- 206
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
Y+ +A+ F + + +G D++T+ ++L AC LG
Sbjct: 207 -------------------YAG-----DAVGLFGEMRDAGFEPDEMTLVSILGACGDLGD 242
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L LG I+ + C L + VF ++ +K+++ WN++
Sbjct: 243 LGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITG 302
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
A +G + EA+ +F M V P+
Sbjct: 303 YAQNGVSDEAIILFSGMRESGVNPD 327
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG- 229
+ID YA+ L +F MP + SW MI++ + + + +E+L F + K G
Sbjct: 368 ALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAV 427
Query: 230 -SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
+ ++ VLSAC H G +D GR Q++ + S + K+ + + + LA
Sbjct: 428 RPNDISFIGVLSACVHAGLVDEGR--QLF-DLMSSSFGLVPKIEHHSCM-----VDLLAR 479
Query: 289 HGFAHEALGMFDRM 302
G HEA ++M
Sbjct: 480 AGHVHEAWDFIEKM 493
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 82/345 (23%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
NS P S+ + I + L++ I ++ ++A +++ + D F+ + + C S+ H
Sbjct: 21 NSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHA 79
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------- 122
IDY +F PNV++Y A F S + AI Y ML +L
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 123 ------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
VH + K G SS V+ +++ Y + ++RRV F+EMPE
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRV----FEEMPEDV 195
Query: 171 FAT----WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A W MID + R N++ AL+AF +
Sbjct: 196 VAKDTVCWTAMIDGFVR--------------------------NEEMNRALEAFRGMQGE 229
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
++ T+ VLSAC+ LGAL++GR + Y C S+ +
Sbjct: 230 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 289
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
VF ++++++++ +N++ L+++G + +A+ +F M +RP
Sbjct: 290 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRP 334
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R A+ +F++M D+ ++ TMI+ S N + R+A++ F
Sbjct: 274 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 333
Query: 230 SDQVTMATVLSACAHLGALDLG 251
VT VL+AC+H G +D G
Sbjct: 334 PTNVTFVGVLNACSHGGLVDFG 355
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 26/137 (18%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA-----------HLGAL 248
+T +I + + + +A+ +++ D MA++L AC H AL
Sbjct: 98 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 157
Query: 249 DLG---------RGIQIY--CRSLGRSLLVFFKLRE----KNLLCWNSITEALAIHGFAH 293
LG R +++Y C LG + VF ++ E K+ +CW ++ + + +
Sbjct: 158 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMN 217
Query: 294 EALGMFDRMTYENVRPN 310
AL F M ENVRPN
Sbjct: 218 RALEAFRGMQGENVRPN 234
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 31/206 (15%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V + G S V VQ ++ YS +RRLFD +WN+MI Y +
Sbjct: 292 HGLVVRAGLGSRVNVQNVLIHMYSSCQDVV----AARRLFDNGESLDHFSWNSMISGYLK 347
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A+ LF+ MP D SW+ MI N Q EAL+ F+ + D VT+ +V
Sbjct: 348 NGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSV 407
Query: 239 LSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNL 276
+SAC++L AL+ G+ + Y R LG SL+ VF L EK
Sbjct: 408 ISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGT 467
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM 302
CWN++ LA++G +L MF M
Sbjct: 468 PCWNAVIVGLAMNGLVTRSLDMFSEM 493
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 140/365 (38%), Gaps = 90/365 (24%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF------HFID 77
+ + I+ QL +C S + L ++A + + D + A + + F TS H +
Sbjct: 1 MLTVSILDAQLSRCCSARHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLH 60
Query: 78 YTILVFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLYM-------------------LRA 116
+++ +F ++ PN F + ++LR + F LY R
Sbjct: 61 HSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPLLAAACAARG 120
Query: 117 EVLLT-TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+V VH K+GFS ++++ A++ YS +RRV FD P +WN
Sbjct: 121 DVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRV----FDAGPVWDAVSWN 176
Query: 176 TMIDAYARLAEL-----LFNKMPA-------------------------------WDIRS 199
T++ Y R ++ +F +MP D +
Sbjct: 177 TILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFT 236
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG------ 253
WT M++ + +N F EAL F+ ++ G D+ M +V++ACA G + G
Sbjct: 237 WTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVV 296
Query: 254 --------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
I +Y C+ + + +F + WNS+ +G +A
Sbjct: 297 RAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKA 356
Query: 298 MFDRM 302
+FD M
Sbjct: 357 LFDVM 361
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG- 229
++ID Y + + +F+ + W +I + N +LD F++ + +GT
Sbjct: 441 SLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAV 500
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK------NLLCWNSIT 283
+++T VLSAC H G ++ GR FFKL + N+ + +
Sbjct: 501 PNEITFTGVLSACRHGGLVEEGR--------------QFFKLMQNKYQIVPNIRHYGCMV 546
Query: 284 EALAIHGFAHEALGMFDRM 302
+ L G+ EA M M
Sbjct: 547 DLLGRAGYVREAEDMIQSM 565
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 135/307 (43%), Gaps = 49/307 (15%)
Query: 34 LKKCS---SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ +++E + ++ ++K +D F+ +S S+ I+ VF +M++ +
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSM-YSKCGEIELCRKVFDRMEDKD 179
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V +++ I Y E+ L K+ FS T ++D S S
Sbjct: 180 VVSWNSL---------IDGYARCGEIELALEMFEEMPEKDSFS-----WTILIDGLSKSG 225
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMIT 205
K +R +FD MP R +WN MI+ Y + A+ LF++MP + +W +MIT
Sbjct: 226 KL----EAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMIT 281
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------- 257
Y +NKQF +AL F + + T+ +SA + + +L GR + Y
Sbjct: 282 GYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKT 341
Query: 258 --------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
C S+ +L VF + +K L W S+ L +HG + L +FD M
Sbjct: 342 DGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMC 401
Query: 304 YENVRPN 310
++P+
Sbjct: 402 RTGLKPH 408
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+ + + SW +I Y +N++ +A+ F K D T+ VL CA
Sbjct: 68 AHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCAR 126
Query: 245 LGALDLGRGIQIYCRSLG--------RSLL--------------VFFKLREKNLLCWNSI 282
LGAL G+ I +G SL+ VF ++ +K+++ WNS+
Sbjct: 127 LGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSL 186
Query: 283 TEALAIHGFAHEALGMFDRMTYEN 306
+ A G AL MF+ M ++
Sbjct: 187 IDGYARCGEIELALEMFEEMPEKD 210
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G + + A+VD Y ++ FD MP + +W +M+ A A
Sbjct: 233 VHSHLLVRGCRIDLILANALVDMYGKCGDLL----MAHTCFDMMPFKNAVSWTSMLCALA 288
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A + F ++P I SW MI+ Y Q +F EALD +N+ K G D+ T+A
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348
Query: 238 VLSACAHLGALDLGR-------------GIQIY---------CRSLGRSLLVFFKLREKN 275
VLSAC LG L G+ G+ ++ C + ++ +F ++ KN
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKN 408
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WN+I ALA+HG A +AL F M + P+
Sbjct: 409 VISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPD 443
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 58/245 (23%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L++C S+ L ++A +V +D ++ S+C + Y +F ++ +P+ F
Sbjct: 19 LRRCGSVHRLNQLHAHLVVHG--VDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVL---------------------LTTVHGQV 127
VY+ A+ + P +A+ M+R +L + HG V
Sbjct: 77 VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GF VFV A++ +Y+ + +SRR FDEM +R +WN+MI+ YA
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRR----FFDEMVDRNVVSWNSMINGYA----- 187
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
Q REA F ++ G +D+ T+ ++L AC+ G
Sbjct: 188 ---------------------QAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGN 226
Query: 248 LDLGR 252
L+ G+
Sbjct: 227 LEFGK 231
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
G + F A++ + + + D A +N+++D YAR ++
Sbjct: 338 GLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTA 397
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF++MP+ ++ SW +I + + + + ++AL F D++T +LSAC H
Sbjct: 398 ISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHG 457
Query: 246 GALDLGR 252
G L+ G+
Sbjct: 458 GLLEAGQ 464
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+++P D + ++I +Y + +EAL + G ++ T+ +L ACA
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 245 LGA-----------LDLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSI 282
+ A + LG Q++ SLG S F ++ ++N++ WNS+
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
A G EA +F+ M + +
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGL 207
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + + S + V+ A++D Y+ + V+ +F+ M R +W ++ +A
Sbjct: 211 VHKYISDHVVQSNLIVENALIDMYAACGEM----SVALGIFESMKSRDVISWTAIVTGFA 266
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +L F++MP D SWT MI Y Q F+EAL F++ + S D+ TM +
Sbjct: 267 NIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVS 326
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
+L+ACA LGAL+LG ++ Y C ++ ++ +F + +
Sbjct: 327 ILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPD 386
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ LAI+G+ EAL MF +M +V P+
Sbjct: 387 KFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPD 421
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 65/294 (22%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQEPNVFVYH--- 95
+ +L+ +++ +KT + + SFC T F ++Y +F + EP VF ++
Sbjct: 1 MDQLKQIHSQTIKTGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTML 60
Query: 96 -AFSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGFS 133
+S + P ++ YL ML+ +VL +H V K G
Sbjct: 61 KGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLG 120
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP 193
S VFVQ A+++ YS +A +F+
Sbjct: 121 SNVFVQNALINMYSLC------------------------------GLTDMARGIFDMSY 150
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ +W MI++Y++ KQ+ + F++ +K VT+ +VLSAC+ L L+ G+
Sbjct: 151 KTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQK 210
Query: 254 IQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ Y + + NL+ N++ + A G ALG+F+ M +V
Sbjct: 211 VHKYISD---------HVVQSNLIVENALIDMYAACGEMSVALGIFESMKSRDV 255
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + + +FN MP D +WT MI + N EALD F + K+
Sbjct: 360 NALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVT 419
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D++T VL AC H G +D GR +
Sbjct: 420 PDEITYVGVLCACTHTGMVDEGRNL 444
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 86/276 (31%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------- 158
+TVHG V + GF V + T+ VD Y +R+V
Sbjct: 127 STVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKS 186
Query: 159 -----SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP--------------- 193
++R+FD MPER TWN ++D + +L LF++MP
Sbjct: 187 GELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYA 246
Query: 194 ----------------AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
D+R+W+ +I Y+QN Q EA F++ D+ M
Sbjct: 247 KGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 306
Query: 238 VLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREK 274
++SAC+ +G +L + Y C + R+ +F ++ ++
Sbjct: 307 LMSACSQMGCFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQR 366
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+L+ + S+ E +AIHG EA+ +F++M E + P+
Sbjct: 367 DLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPD 402
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 123/295 (41%), Gaps = 49/295 (16%)
Query: 62 AKQFISFCTSRFHFIDY-------TILVFPQMQEPN------VFVYHAFSSLRHPLQAIA 108
+K+ +S+ TS F FI TI+ + EP+ FV S+
Sbjct: 60 SKEVVSYATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFP 119
Query: 109 FYLYMLRAE-----VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
F A+ L+ T+H Q + G S +F ++ YS + +LF
Sbjct: 120 FVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYS----LIAPIDSALQLF 175
Query: 164 DEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
DE P+R T+N +ID + E+ LF+ MP D+ SW ++I+ Y+Q REA+
Sbjct: 176 DENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIK 235
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------- 257
F++ G D V + + LSACA G G+ I Y
Sbjct: 236 LFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYA 295
Query: 258 -CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C + ++ +F +K L WN++ LA+HG + F +M ++P+G
Sbjct: 296 KCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 178 IDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
ID + EL +K + +W MIT + + +D F K SG D VT +
Sbjct: 300 IDTAMEIFELCSDKT----LFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFIS 355
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
VL C+H G +D R + RSL + + + + + L G EA
Sbjct: 356 VLVGCSHSGLVDEARNLFDQMRSLYDV--------NREMKHYGCMADLLGRAGLIEEAAE 407
Query: 298 MFDRMTYEN 306
M ++M +
Sbjct: 408 MIEQMPKDG 416
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 123/289 (42%), Gaps = 58/289 (20%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFY--------------------- 110
+DY+ + Q +P VF + A S P ++ F+
Sbjct: 32 VDYSNQILDQCNDPTVFALNSMIRAHSKGSKPQKSFYFFNRIIHSHNGISPDNYTFNFLI 91
Query: 111 --LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
L A+ + VHG V K GF VQ+ ++ Y+ R++FD +P+
Sbjct: 92 RACAQLLAKEIGLAVHGCVIKYGFGLDPHVQSGLIFMYAE----LGCLGFCRQVFDLIPQ 147
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
M+ A ++ ++ LF+ MP D +W+ MI Y+Q Q REAL F+
Sbjct: 148 PDLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQCGQSREALALFHLM 207
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSL 261
+ +V+M +VLSA + LGALD GR Y C +
Sbjct: 208 QLEDVKVSEVSMVSVLSASSQLGALDNGRWAHAYIERNKIPVTVTLGTALVDMYAKCGDM 267
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ VF+ ++EKN+ W+S LA++G H+ L +F M + V PN
Sbjct: 268 NKAMEVFWAMKEKNVYTWSSAIYGLAMNGAGHKCLELFSLMKKDGVLPN 316
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 147/325 (45%), Gaps = 63/325 (19%)
Query: 45 CVYATIVKTNANLDCFLAKQFISFCT-----SRFHFIDYTILVFPQMQEPNVFVY----H 95
CV +++V+ A D K +S+ S+ F+D +VF ++ ++ +
Sbjct: 244 CVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIID 303
Query: 96 AFSSLRHPLQAIAFYLYMLRA-----EVLLTTV-----------HGQ-----VWKNGFSS 134
+ + +A+ Y M+ A +V++ + GQ V K GF
Sbjct: 304 GYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDC 363
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLF 189
F+Q+ ++ Y+ + E+ R E A+WN +I Y R A LF
Sbjct: 364 YDFIQSTIIHLYAACGRINEACLQFRIGSKE----NVASWNALIAGYVRNRMIDRAMELF 419
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
N+MP D+ SW+TMI+ Y+QN+Q AL+ F+K SG ++VTM +VLSA A G L
Sbjct: 420 NEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLK 479
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREK--NLLCWNSITEA 285
GR Y C S+ +L VF+++REK + WN+I
Sbjct: 480 EGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICG 539
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
LA+HG A+ +L +F + +++ N
Sbjct: 540 LAVHGHANLSLKIFSDLERRHIKLN 564
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 53/292 (18%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQM--QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAE 117
FL S+ S ++ IL PQ+ Q+ N F++ +SL +P + Y L
Sbjct: 13 FLITSPFSYPASSLKWVSTEILKIPQIFQQQENPFLH--LNSLLNPKTGQRHFNYEL--- 67
Query: 118 VLLTT---------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRL 162
VL++ +H V K+G S F+Q ++++ Y +++ +
Sbjct: 68 VLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSI---- 123
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
FD P ++N MI Y + +L LF++MP S+TTMI +SQN+ + +A+
Sbjct: 124 FDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAV 183
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---GIQI------------------ 256
+ F + + G ++VT+AT++SA +H G + R G+ I
Sbjct: 184 ELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMY 243
Query: 257 -YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C SL + +F ++ EKN++ WN + + GF A +F+R+ +++
Sbjct: 244 CVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDL 295
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 59/330 (17%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+C+S+ L ++A +VK+ D A + ++FC + Y + PN F+++
Sbjct: 42 RCASMAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVSYAERLVRHHPRPNSFMWN 101
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQVWKN 130
A S P A+A ++ ML + LL +HG K
Sbjct: 102 TVIRALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKL 161
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----A 185
G + +V+ A + Y+ + E+ LF + PE N+ I A AR A
Sbjct: 162 GLAGDAYVRNATIAMYASCARADEALA----LFGQCPEFDAVACNSAIVALARAGRVDEA 217
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+F+ MP + +W+ M+++Y++ + EAL F+ + G + + +VL CA L
Sbjct: 218 RAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCASL 277
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN---LLCWN 280
GALD G + Y C S+ + VF R + L WN
Sbjct: 278 GALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWN 337
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ + LA+HG EA+ +F + + P+
Sbjct: 338 SMMQGLAVHGQWREAVALFSELRSYGLSPD 367
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 27/127 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + ++G + V TA+VD Y ++R+V FD + A
Sbjct: 286 VHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQV----FDAARSQGSAK--------- 332
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ SW +M+ + + Q+REA+ F++ + G D VT VL+A
Sbjct: 333 --------------LSSWNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAY 378
Query: 243 AHLGALD 249
H G D
Sbjct: 379 GHAGMPD 385
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 58/287 (20%)
Query: 77 DYTILVFPQMQEPNVF----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHG------- 125
DY + ++ + P VF + F P +I+ Y +M R+ V H
Sbjct: 83 DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142
Query: 126 ---------------QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-R 169
V K GF VFV+ A++ Y + +++V FDE+P R
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQV----FDEVPSSR 198
Query: 170 KFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
+WN+MI + RL ++ LF +MP D+ SW T+I+ QN + +ALD F +
Sbjct: 199 DVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELG 258
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLG 262
+ ++ + ++L+A A LG L+ G+ I C +
Sbjct: 259 EQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCID 318
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
S +F ++ EK+ WN + LA HG EAL +F++ + P
Sbjct: 319 ESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHP 365
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 25/138 (18%)
Query: 176 TMIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LF++MP D SW MI + + +EAL F K G
Sbjct: 306 ALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHP 365
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSITE 284
VT VL+AC+ G + G+ FFKL E + + + +
Sbjct: 366 VNVTFIGVLTACSRAGLVSEGKH--------------FFKLMTDTYGIEPEMEHYGCMVD 411
Query: 285 ALAIHGFAHEALGMFDRM 302
L+ GF ++A+ M +RM
Sbjct: 412 LLSRAGFVYDAVEMINRM 429
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 117/274 (42%), Gaps = 86/274 (31%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------ 158
+H V K GF ++V TA+VD Y+ + +R++
Sbjct: 110 IHNHVLKMGFGLDLYVSTALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGD 169
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI------ 204
+R LFD+MPE+ A +N M+D Y + ++ LF+KMPA ++ SWT+MI
Sbjct: 170 MGNARILFDQMPEKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSG 229
Query: 205 -------------------------TSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATV 238
YSQN + EAL F++ + ++ D+VT+ +V
Sbjct: 230 GDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSV 289
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
L A A LGALDLG I + C + ++ VF + +K
Sbjct: 290 LPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAKCGEMLKARRVFDSMPKKEE 349
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A++G A EAL F M E V+PN
Sbjct: 350 ASWNALINGFAVNGCADEALTAFSEMKREGVKPN 383
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL-----F 189
P +D S+ ++F +++ +R ++D YA+ E+L F
Sbjct: 291 PAIADLGALDLGSWIHQFARLKKI---------DRSINVCTALVDMYAKCGEMLKARRVF 341
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+ MP + SW +I ++ N EAL AF++ K+ G + VTM +VLSAC H G ++
Sbjct: 342 DSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVKPNDVTMISVLSACNHGGLVE 401
Query: 250 LGR 252
G+
Sbjct: 402 EGK 404
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHGQ + G +V +++D Y ++R+ LFD+M R A+WN +I Y
Sbjct: 129 VHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK----LFDKMIVRDMASWNALIAGYM 184
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT--GSDQVTM 235
+ +AE LF +M +I SWT MI+ Y+QN +AL F++ + G+ + VT+
Sbjct: 185 KEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTI 244
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLG------------------------RSLLVFFKL 271
+VL ACA AL+ GR I + +G R
Sbjct: 245 VSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQ 304
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KNL+ WN++ A A HG EA+ +F+ M V+P+
Sbjct: 305 NGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPD 343
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+W TMIT+Y+ + EA+ F ++G D VT +LS C+H G +D G
Sbjct: 311 AWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 363
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
V+ V G V ++ A++D + F +R +FD M + +W TM++AYA
Sbjct: 265 VYRYVADGGVGRSVNLENALIDMFGK----FGCAASAREVFDSMAVKDVYSWTTMVNAYA 320
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +L LF+ MP + SW+ MI +YSQ Q EA+ F + G + +
Sbjct: 321 KCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVS 380
Query: 238 VLSACAHLGALDLGR---------GIQIYCRSLGRSLL--------------VFFKLREK 274
VLSACA LG LDLGR G + +LG + + +F ++ E+
Sbjct: 381 VLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAER 440
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ WNS+ A A+HG + E L +F+++ + P+
Sbjct: 441 NVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPD 476
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 131/339 (38%), Gaps = 81/339 (23%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDY 78
T+ + + H + L+ C+S ++A + + F A + ++FC S +D+
Sbjct: 30 TNRNLVVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDH 89
Query: 79 TILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLR------AEVLLTTVHGQVW 128
+ + PN ++ AF R P +A A + ++R A L+ +
Sbjct: 90 AAAILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAAS 149
Query: 129 KNGFSSPV--------------FVQTAMVDN---YSYSNKFFESRRVSRRLFDEMPERKF 171
++ SP Q+ +V N + Y+N S +R LFDEMP+R
Sbjct: 150 EHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANH--RSLAHARNLFDEMPDRDV 207
Query: 172 ATWNTMIDAYAR--LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+W T++D YAR LA+ AW R + M+ + G
Sbjct: 208 VSWTTLVDGYARRGLAD------EAW--RVFCRMVVA-------------------GGLQ 240
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCR--SLGRSL--------------------LV 267
++VT+ V+SA +G L GR + Y +GRS+ V
Sbjct: 241 PNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREV 300
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
F + K++ W ++ A A G A +FD M N
Sbjct: 301 FDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRN 339
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ID YA+ + LF +M ++ SW +MI +++ + Q E L F + K +
Sbjct: 415 NAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIV 474
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D++T +LSAC+H G + GR
Sbjct: 475 PDEITFLGLLSACSHSGLVSEGR 497
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 137/300 (45%), Gaps = 58/300 (19%)
Query: 64 QFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF---SSLRHPL-QAIAFYLYMLRAEV- 118
FIS C S F+ I Y +F Q PN+F++++ SL P Q++ + M +
Sbjct: 46 HFISVCAS-FNRIAYADRLFSQSHNPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIV 104
Query: 119 --------------------LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV 158
L V +V++ GF ++ +V+ Y K ++ +
Sbjct: 105 PDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWK- 163
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+FDEM R WN MI + + + LF +M + SW T+I+ +QN++
Sbjct: 164 ---MFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRD 220
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS---------LGRS 264
EAL+ F + ++ G D+VT+ T+L C+ LGAL++G+ I Y S +G S
Sbjct: 221 VEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNS 280
Query: 265 LLVFF--------------KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ F+ K+ K+++ WN+I A++G A+ +F M E ++PN
Sbjct: 281 LIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPN 340
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + + +F KM + SW T+I ++ N + A+D F + +K
Sbjct: 279 NSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLK 338
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ T VL+AC H G L+ GR
Sbjct: 339 PNDATFVAVLTACVHSGLLEKGR 361
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 132/311 (42%), Gaps = 80/311 (25%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVFVYHAF- 97
+K+L+ V+A ++ T L + I+ C++R I YT L+F + P+ F++++
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVI 79
Query: 98 ---SSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQVWKNGFS 133
S LR PL +A+Y ML + V + VH +GF
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP 193
+VQ A+V YS +R+V FD MPE+ WN
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQV----FDRMPEKSIVAWN------------------ 177
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
++++ + QN EA+ F + ++SG D T ++LSACA GA+ LG
Sbjct: 178 --------SLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSW 229
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ Y C +G++ VF K++E N+ W ++ A HG+
Sbjct: 230 VHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 292 AHEALGMFDRM 302
+A+ +F++M
Sbjct: 290 GQQAVELFNKM 300
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 118/261 (45%), Gaps = 29/261 (11%)
Query: 3 VKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKEL---ECVYATIVKTNANLDC 59
V Y R +++S N P++ +F + +K C+ + L + V+ V + LD
Sbjct: 92 VAYYRRMLSS---NVSPSNYTFTSV------IKSCADLSALRIGKGVHCHAVVSGFGLDT 142
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVL 119
++ ++F S+ ++ VF +M E ++ +++ S F L E +
Sbjct: 143 YVQAALVTF-YSKCGDMEGARQVFDRMPEKSIVAWNSLVS--------GFEQNGLADEAI 193
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
V Q+ ++GF +++ + + V + + E + +I+
Sbjct: 194 --QVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALIN 251
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQV 233
Y+R ++ +F+KM ++ +WT MI++Y + ++A++ FNK + G + V
Sbjct: 252 LYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNV 311
Query: 234 TMATVLSACAHLGALDLGRGI 254
T VLSACAH G ++ GR +
Sbjct: 312 TFVAVLSACAHAGLVEEGRSV 332
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LLF +P D + ++I S S+ + + + + S T +V+ +CA L
Sbjct: 62 LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL +G+G+ + C + + VF ++ EK+++ WNS+
Sbjct: 122 ALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVS 181
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
+G A EA+ +F +M P+
Sbjct: 182 GFEQNGLADEAIQVFYQMRESGFEPD 207
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 32/213 (15%)
Query: 122 TVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++H V K G + V V TA+VD YS + ++ +FDEM R +WNTMID
Sbjct: 112 SIHAYVRKLGLDTENVMVGTALVDMYSKCGQL----DLAWLMFDEMHVRNSVSWNTMIDG 167
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
R E+ LF++M D SWT+MI + + F +AL+ F + + +G D VT+
Sbjct: 168 CMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTI 227
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
+VL+ACA+LGAL LG I + C + + VF ++ +
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
++L+ WNS+ A++G A EAL F+ M E
Sbjct: 288 RSLVSWNSMIVGFALNGHAEEALEFFNLMRKEG 320
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 127/283 (44%), Gaps = 58/283 (20%)
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAE-------VLLTTV------- 123
+F M + ++ Y+A FS QA+ YL +L+A+ + ++T+
Sbjct: 94 LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153
Query: 124 ---------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
H Q+ + GF + FV + +VD Y+ + +++R FDE+ + +
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRA----FDEVDSKNVVMY 209
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMI R A LF M D +WTTM+T ++QN EAL+ F + + G
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIA 269
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
DQ T ++L+AC L AL+ G+ I Y CRS+ + V
Sbjct: 270 IDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETV 329
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ KN++ W ++ +G + EA+ +F M + + P+
Sbjct: 330 FRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 56/213 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + + VFV +A+VD YS
Sbjct: 294 IHAYIIRTRYDDNVFVGSALVDMYSKCRSI------------------------------ 323
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+LAE +F +M +I SWT +I Y QN EA+ F++ ++ G D T+ +V+S+C
Sbjct: 324 KLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSC 383
Query: 243 AHLGALDLGRGIQIYCRSLGRSLL------------------------VFFKLREKNLLC 278
A+L +L+ G Q +C +L L+ +F ++ + +
Sbjct: 384 ANLASLE--EGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 441
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W ++ A G A E + +F++M + V+P+G
Sbjct: 442 WTALVSGYAQFGRAKETIDLFEKMLAKGVKPDG 474
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT +++ Y+Q + +E +D F K G
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVK 471
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VT VLSAC+ G ++ GR
Sbjct: 472 PDGVTFIGVLSACSRAGFVEKGR 494
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 37/200 (18%)
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID--AYARL---AELLF 189
P ++ ++ Y + + +RRV FD MP T+N ++ A+ARL E LF
Sbjct: 40 PTYLLNHLLTAYGKAGRHARARRV----FDAMPHPNLFTYNALLSTLAHARLLSDMEALF 95
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTGSDQVTMATVLSACAHLGA 247
M DI S+ +I +S +A+ + S ++TM+T++ A + LG
Sbjct: 96 ASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGD 155
Query: 248 LDLGRGIQIYCRSL------------------------GRSLLVFFKLREKNLLCWNSIT 283
LG+ Q +C+ L G + F ++ KN++ +N++
Sbjct: 156 RALGK--QFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213
Query: 284 EALAIHGFAHEALGMFDRMT 303
L EA +F+ MT
Sbjct: 214 TGLLRCKMVEEARRLFEVMT 233
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 34/220 (15%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTM 177
L + VH K G + +FV+ A+V Y S RRV FDE+P R TWN +
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRV----FDELPRVRDVLTWNEV 219
Query: 178 IDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ Y R +A +F++MP D SW+T++ Y + ++ AL F + G +Q
Sbjct: 220 LAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQ 279
Query: 233 VTMATVLSACAHLGALDLGR---------GIQIYCRSLGRSLL--------------VFF 269
+ T LSA A LG L+ G+ G+ + C ++G +L+ VF
Sbjct: 280 AAVVTALSAAARLGLLEHGKFVHNVVQRSGMPV-CMNVGAALVDMYAKCGCVAVAREVFD 338
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+R +++ WN++ LA HG +A+ +F+R E + P
Sbjct: 339 GMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSP 378
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ +A +F+ M D+ +W MI + + R+A++ F + G
Sbjct: 319 ALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSP 378
Query: 231 DQVTMATVLSACAHLGALDLGR 252
VT VL+ C+ G + GR
Sbjct: 379 TNVTFVGVLNGCSRSGLVAEGR 400
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG+V + GF V+ +V+ Y+ + ++++V FDEMPER WN M+ +
Sbjct: 646 VHGEVIRTGFHRLGKVRIGVVELYTSGGRMGDAQKV----FDEMPERNVVVWNLMVRGFC 701
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ F +M I SW +MI+S S+ + REAL+ F + G D+ T+ T
Sbjct: 702 DSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVT 761
Query: 238 VLSACAHLGALDLGRGIQ---------------------IYCRS--LGRSLLVFFKLREK 274
+L A LG LD G+ I YC+S L + +F K++ +
Sbjct: 762 MLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDFYCKSGDLEAATAIFRKMQRR 821
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
N++ WN++ A++G + +FD M E V PN
Sbjct: 822 NVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPN 858
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 34/220 (15%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTM 177
L + VH K G + +FV+ A+V Y S RRV FDE+P R TWN +
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRV----FDELPRVRDVLTWNEV 219
Query: 178 IDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ Y R +A +F++MP D SW+T++ Y + ++ AL F + G +Q
Sbjct: 220 LAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQ 279
Query: 233 VTMATVLSACAHLGALDLGR---------GIQIYCRSLGRSLL--------------VFF 269
+ T LSA A LG L+ G+ G+ + C ++G +L+ VF
Sbjct: 280 AAVVTALSAAARLGLLEHGKFVHNVVQRSGMPV-CMNVGAALVDMYAKCGCVAVAREVFD 338
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+R +++ WN++ LA HG +A+ +F+R E + P
Sbjct: 339 GMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSP 378
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ +A +F+ M D+ +W MI + + R+A++ F + G
Sbjct: 319 ALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSP 378
Query: 231 DQVTMATVLSACAHLGALDLGR 252
VT VL+ C+ G + GR
Sbjct: 379 TNVTFVGVLNGCSRSGLVAEGR 400
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
++ + K G P + ++ A++D ++ + +R V FDEM R +W +++ +
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGV----FDEMKTRDVISWTSIVTGF 316
Query: 182 AR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A LA F++MP D SWT MI Y + +F+E L F + S D+ TM
Sbjct: 317 ANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMV 376
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
++L+ACAHLGAL+LG + Y C ++ ++ +F ++++K
Sbjct: 377 SILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKK 436
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W ++ LA +G EAL MF M +V P+
Sbjct: 437 DKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPD 472
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 126/283 (44%), Gaps = 27/283 (9%)
Query: 34 LKKCSSIKELECVYATIVKTNANLD-CFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L+ C+++ E+ +++ +KT + + FL K I CT + Y VF ++ +P+VF
Sbjct: 42 LETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVF 101
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
+++ +S + ++ Y ML VH + +GF+ P ++ D
Sbjct: 102 IWNTMIKGYSRINCSESGVSLYKLML--------VH-NIKPDGFTFPFLLKGFTKDMALK 152
Query: 149 SNKFFESRRVSRRLFDE--MPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITS 206
K + V D ++ F ++ A +F+ W++ +W +++
Sbjct: 153 YGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLC-GLVNYARKIFDMGDGWEVVTWNVVLSG 211
Query: 207 YSQNKQFREALDAFNKTKK--SGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
Y++ K++ E+ F + +K + VT+ +LSAC+ L DL G IY + +
Sbjct: 212 YNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLK--DLVGGKCIYNKYIKEG 269
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++ E NL+ N++ + A G A G+FD M +V
Sbjct: 270 IV------EPNLILENALIDMFASCGEMDAARGVFDEMKTRDV 306
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + A+ +FN+M D +WT MI + N EAL F+ ++
Sbjct: 411 NALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVT 470
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D++T V+ AC H+G + G+
Sbjct: 471 PDEITYIGVMCACTHVGLVAKGK 493
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 105/248 (42%), Gaps = 71/248 (28%)
Query: 107 IAFYLYMLRAEVLLTTV---------------------HGQVWKNGFSSPVFVQTAMVDN 145
+ FY MLR +VL + H Q+ K GF + +QT ++D
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74
Query: 146 YSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMIT 205
Y+ E+R LFD M ER + +W TMI+
Sbjct: 75 YAKHGYVEEARN----LFDNMTERNSNSV------------------------TWNTMIS 106
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS----- 260
+Y Q +F A+ F + + +VTM ++LSACAHLGALD+G I Y R+
Sbjct: 107 AYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKI 166
Query: 261 ---LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
LG +L+ VF L KN+ CWNSI L ++G EA+ F M
Sbjct: 167 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVME 226
Query: 304 YENVRPNG 311
E ++P+G
Sbjct: 227 KEGIKPDG 234
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + L +F+ + +I W ++I N + EA+ AF +K G
Sbjct: 172 NALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIK 231
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D VT +LS C+H G L G+ + + LG L E + + + + L
Sbjct: 232 PDGVTFVGILSGCSHSGLLSAGQ--RYFSEMLGVYGL------EPGVEHYGCMVDLLGRA 283
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G+ EAL + M ++PN
Sbjct: 284 GYLKEALELIRAMP---MKPN 301
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 67/342 (19%)
Query: 31 ANQLKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
+ L C+ +K+L+ ++ ++K+ LD ++ I S+ F+D VF M
Sbjct: 155 GSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDI-YSKCGFVDCAQRVFDGMM 213
Query: 88 EPNVFVYHAFSSLRH----PLQAIAFYLYMLRA-----EVLLTTV--------------- 123
E NV +++ + +A+ ++ M+ + EV L +V
Sbjct: 214 ERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLE 273
Query: 124 -HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H V K + + + A+VD Y+ + E+R V FD MP R + +M+ Y
Sbjct: 274 IHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCV----FDRMPIRNVVSETSMVSGY 329
Query: 182 ARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ A LLF KM ++ SW +I Y+QN + EAL F K+ T
Sbjct: 330 AKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFG 389
Query: 237 TVLSACAHLGALDLGRG--------------------------IQIY--CRSLGRSLLVF 268
+L+ACA+L L LGR I +Y C S+ +F
Sbjct: 390 NLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIF 449
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ E++ + WN++ A +G+ EALG+F +M +P+
Sbjct: 450 ENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPD 491
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ K F+ VF+Q ++D Y F ++R++ FD+MPE+ +WN ++
Sbjct: 41 IHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKI----FDQMPEKNVFSWNAIVSTLV 96
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ L LF MP D SW ++I ++Q+ +F EAL+ F K + G ++ T +
Sbjct: 97 KSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGS 156
Query: 238 VLSACAHLGALDLGRGIQIYCRSL----------GRSLL--------------VFFKLRE 273
LSACA G DL G QI+ L G +L+ VF + E
Sbjct: 157 GLSACA--GLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMME 214
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ WNS+ +G + EAL +F RM P+
Sbjct: 215 RNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPD 251
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 94/259 (36%), Gaps = 70/259 (27%)
Query: 29 IIANQL----KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFP 84
I++N L KC I E CV+ + N + + + + + L+F
Sbjct: 289 ILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTAS-----VKAARLLFT 343
Query: 85 QMQEPNVFVYHAFSS--LRHPLQAIAFYLY-MLRAEVLLTT------------------- 122
+M E NV ++A + ++ A L+ ML+ E + T
Sbjct: 344 KMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLADLQL 403
Query: 123 ---VHGQVWKNGF------SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
H V K+GF S VFV A++D Y E R+ F+ M ER +
Sbjct: 404 GRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRI----FENMVERDYV- 458
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
SW MI Y+QN EAL F K SG D V
Sbjct: 459 -------------------------SWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHV 493
Query: 234 TMATVLSACAHLGALDLGR 252
TM L AC+H G + GR
Sbjct: 494 TMIGALCACSHAGLVQEGR 512
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFDEMPER +W +MI Y A LF+ MP ++ SW MI Y QNKQ
Sbjct: 218 ARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQP 277
Query: 214 REALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQ----------------- 255
EAL F + + S ++VT+ ++L A A LGAL+LG +
Sbjct: 278 HEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTS 337
Query: 256 -----IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ C + ++ VF ++ +K WN++ A++G A EAL F M E ++PN
Sbjct: 338 LVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPN 397
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 35/172 (20%)
Query: 82 VFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
+F ++Q VF + + + L AIA L A L VH V + + V V T+
Sbjct: 283 LFRELQSSTVFEPNEVTVV-SILPAIA----TLGALELGEWVHRFVQRKKLDAAVNVCTS 337
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWT 201
+VD Y + ++R+V F E+P+++ ATWN +I+ +A
Sbjct: 338 LVDMYLKCGEISKARKV----FSEIPKKETATWNALINGFA------------------- 374
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
N EAL+AF++ ++ G + +TM VLSAC+H G ++ G+G
Sbjct: 375 -------MNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKG 419
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 31/220 (14%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L+ T+H Q + G S +F ++ YS + +LFDE P+R T+N +I
Sbjct: 549 LVKTLHCQALRFGLLSDLFTLNTLIRAYS----LMAPIGSALQLFDENPQRDVVTYNVLI 604
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
D + E+ LF+ MP D+ SW ++I Y+Q Q REA+ F++ G D V
Sbjct: 605 DGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDEMIGLGLKPDNV 664
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
+ + LSACA G L+ G+ I Y C + ++ +F
Sbjct: 665 AIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAMEIFHLS 724
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+K L WN++ LA+HG + F +M ++P+G
Sbjct: 725 SDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDG 764
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
+W MIT + + +D F+K SG D V+ +VL C+H G + R +
Sbjct: 731 TWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVGCSHSGLVGEARKLFDQM 790
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
RSL + + ++ + + + + L G EA M ++M + +
Sbjct: 791 RSL-------YDV-DREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGK 832
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 60/350 (17%)
Query: 17 SFPTSVSFIRIHIIANQLK-KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF 75
S P+ +F+ H L +C+++ L ++A +VK+ + D A + ++FC
Sbjct: 21 SSPSISAFLASHPALTLLHTQCATMAHLRQLHAALVKSGLSKDPIAASRAVAFCAGEGRD 80
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL----------- 120
Y + PN F+++ A S P A+A ++ MLR+
Sbjct: 81 AAYAARIVRYHPRPNSFMWNTAIRALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLFAA 140
Query: 121 ----------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
+HG V K G + + + + Y+ S + E+ LF +
Sbjct: 141 YARLGRADDGAALHGMVLKLGLAGDAYTRNTTIAMYASSGRADEALA----LFGQCQVFD 196
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
N+ I A +R A +F+ MP+ + +W+ M+++YS+ +F +A+D F+ +
Sbjct: 197 VVACNSAIVALSRAGRVDEARAVFDGMPSRTVATWSAMVSAYSRAARFHDAVDLFSAMQV 256
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
G + + +VL CA LGAL+ G + Y C S+ +
Sbjct: 257 DGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKQDVGMNALVVIALVDMYCKCGSIHK 316
Query: 264 SLLVFFKLREKNLL---CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF R + L WN++ LA HG EAL +F + +RP+
Sbjct: 317 ARQVFDTSRSQGLAKLSSWNAMMLGLAAHGQCQEALALFSELESYGLRPD 366
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
T M+ Y + KF E+ LF++MP++ MI Y + A++LF+++P
Sbjct: 134 TVMISGYVENGKFDEAEN----LFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 189
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG- 253
D+ SW MIT Y+QN EAL ++ K G D T+ +VL+AC+ L +L GR
Sbjct: 190 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 249
Query: 254 -------------------IQIYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
I +YC+ S+ S L F ++ +++ WN++ A A HGF
Sbjct: 250 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 309
Query: 293 HEALGMFDRMTYENVRPNG 311
AL F M V P+G
Sbjct: 310 DRALASFGEMRSNRVEPDG 328
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 159 SRRLFDEMPERKFATWNTMI-----DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
S+RLF MP + +WN+MI D A F MP + SW MI+ + +
Sbjct: 25 SKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRV 84
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
EA F + + ++ ++ A +G ++ R + F + +
Sbjct: 85 EEASRLFEEMPRRNV----ISYTAMVDGYAKIGEIEQARAL-------------FNCMPQ 127
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
KN++ W + +G EA +F++M +N+
Sbjct: 128 KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI 161
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q+ K G +++ S E R+ + E + + N +I Y
Sbjct: 214 LHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYC 273
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +EL F ++ D+ SW MI +++++ + AL +F + + + D +T +
Sbjct: 274 KCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLS 333
Query: 238 VLSACAHLGAL 248
+LSAC H G +
Sbjct: 334 LLSACGHAGKV 344
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 153/331 (46%), Gaps = 46/331 (13%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC 69
+ +F +NS V+ + + + + KC++I + ++ +N +L +A ++
Sbjct: 258 VYAFIRNS-GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQG 316
Query: 70 TSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWK 129
+R + +++ ++ + + A SS LR + + HG V +
Sbjct: 317 LTREALGVFNLMMDSGVRPDRISMLSAISSCSQ-----------LRNILWGKSCHGYVLR 365
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
NGF S + A++D Y ++ + + R+FD M + TWN+++ Y E+
Sbjct: 366 NGFESWDNICNALIDMYMKCHR----QDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACA 243
F MP +I SW T+I+ Q F EA++ F + + G +D VTM ++ SAC
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACG 481
Query: 244 HLGALDLGR---------GIQIYCRSLGRSLL--------------VFFKLREKNLLCWN 280
HLGALDL + GIQ+ R LG +L+ +F L +++ W
Sbjct: 482 HLGALDLAKWIYYYIEKNGIQLDVR-LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 540
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ A+A+ G A A+ +FD M + ++P+G
Sbjct: 541 AAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 55/220 (25%)
Query: 115 RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
RA+ +HG + K G++ +FVQ ++V Y+ + +R+V FDEM ER +W
Sbjct: 148 RAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKV----FDEMSERNVVSW 203
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQF-REALDAFNK-TKKSGTGSDQ 232
+MI YAR + F ++A+D F + + +
Sbjct: 204 TSMICGYAR---------------------------RDFAKDAVDLFFRMVRDEEVTPNS 236
Query: 233 VTMATVLSACAHLGALDLGR---------GIQI-------------YCRSLGRSLLVFFK 270
VTM V+SACA L L+ G GI++ C ++ + +F +
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL N++ G EALG+F+ M VRP+
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-- 257
+ ++I Y+ + EA+ F + SG D+ T LSACA A G GIQI+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRA--KGNGIQIHGL 159
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C L + VF ++ E+N++ W S+ A FA +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 296 LGMFDRMTY-ENVRPN 310
+ +F RM E V PN
Sbjct: 220 VDLFFRMVRDEEVTPN 235
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++D ++R + +FN + D+ +WT I + + A++ F+ + G
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D V L+AC+H G + G+ I Y S+L + +++ + + + L G
Sbjct: 570 DGVAFVGALTACSHGGLVQQGKEI-FY------SMLKLHGVSPEDVH-YGCMVDLLGRAG 621
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA+ + + M E PN
Sbjct: 622 LLEEAVQLIEDMPME---PN 638
>gi|255587181|ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525755|gb|EEF28217.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 513
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 27/180 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
+++ LF+ MP R ++WNTMI YA+ + LF++MP D SW+ MI Y QN
Sbjct: 323 MAKELFEAMPFRNISSWNTMITGYAQSGNVPHARNLFDRMPQRDSISWSAMIAGYVQNGC 382
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQ-------- 255
EA+ + + K+ G ++ + +VL+ACA + ALDLG+ G Q
Sbjct: 383 NEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAALDLGKQFHGWLVKVGYQTGCYVGNA 442
Query: 256 ---IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+YC+ S+ + F ++ +K+L+ WN++ A HGF EAL +F+ M V+P+
Sbjct: 443 LLAMYCKCGSIDEADDAFHEITDKDLISWNTMIYGYARHGFGKEALIVFESMKTVGVKPD 502
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
AM+ Y + +F ++R +FD+MPER TWN M+ Y R L LF +MP
Sbjct: 93 AMISGYLSNGRF----DLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRR 148
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR--- 252
D+ SW M++ Y+QN EA + F++ + ++ +L+A G ++ R
Sbjct: 149 DVVSWNAMLSGYAQNGFIAEAREIFDEMPVKNS----ISWNGLLAAYVQNGRIEDARRLF 204
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G + + L + VF ++ ++ + WN++ A +G EA
Sbjct: 205 ESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARK 264
Query: 298 MFDRMTYENV 307
+F+ ++V
Sbjct: 265 LFEESPTQDV 274
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 112/262 (42%), Gaps = 40/262 (15%)
Query: 77 DYTILVFPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYMLRAEVL-LTTVHGQVWKNG 131
D +F +M E ++F ++ S ++ A + M R +V+ + +NG
Sbjct: 105 DLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNG 164
Query: 132 F---SSPVFVQTAMVDNYSYSN---KFFESRRV--SRRLFDEMPERKFATWNTMIDAYAR 183
F + +F + + ++ S++ + ++ R+ +RRLF+ + +WN ++ + +
Sbjct: 165 FIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRLFESKMDWDVVSWNCLMGGFVK 224
Query: 184 LAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L+ F+++P D SW TMIT Y+QN + EA F ++ D T +
Sbjct: 225 KKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARKLFEESPT----QDVFTWTAM 280
Query: 239 LSACAHLGALDLGRGI------------------QIYCRSLGRSLLVFFKLREKNLLCWN 280
+S G +D R I + C+ + + +F + +N+ WN
Sbjct: 281 VSGYVQNGMVDEARSIFDKMPEKNSVSWNAMIAGYVQCKRMDMAKELFEAMPFRNISSWN 340
Query: 281 SITEALAIHGFAHEALGMFDRM 302
++ A G A +FDRM
Sbjct: 341 TMITGYAQSGNVPHARNLFDRM 362
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 26/171 (15%)
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
AM+ Y+ + E+R + FDEMP + +WN ++ AY + + LF W
Sbjct: 155 AMLSGYAQNGFIAEAREI----FDEMPVKNSISWNGLLAAYVQNGRIEDARRLFESKMDW 210
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D+ SW ++ + + K+ +A F++ D+V+ T+++ A G L+ R +
Sbjct: 211 DVVSWNCLMGGFVKKKRLVDARRVFDRIPV----RDEVSWNTMITGYAQNGELEEARKL- 265
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
F + +++ W ++ +G EA +FD+M +N
Sbjct: 266 ------------FEESPTQDVFTWTAMVSGYVQNGMVDEARSIFDKMPEKN 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 53/151 (35%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
++F+ MP R T+N MI Y LA +F+KMP D+ +W M++ Y +NK +
Sbjct: 78 QVFNTMPRRSTVTYNAMISGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLTD 137
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A RG+ F ++ ++
Sbjct: 138 A-----------------------------------RGL-------------FERMPRRD 149
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
++ WN++ A +GF EA +FD M +N
Sbjct: 150 VVSWNAMLSGYAQNGFIAEAREIFDEMPVKN 180
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
DI +W IT++ +N Q AL FN + T VT ++S G DL R +
Sbjct: 56 DIVNWNMAITTHMRNGQCHSALQVFNTMPRRST----VTYNAMISGYLSNGRFDLAREM- 110
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
F K+ E++L WN + + +A G+F+RM +V
Sbjct: 111 ------------FDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDV 150
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 34/220 (15%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTM 177
L + VH K G + +FV+ A+V Y S RRV FDE+P R TWN +
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRV----FDELPRVRDVLTWNEV 219
Query: 178 IDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ Y R +A +F++MP D SW+T++ Y + ++ AL F + G +Q
Sbjct: 220 LAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQ 279
Query: 233 VTMATVLSACAHLGALDLGR---------GIQIYCRSLGRSLL--------------VFF 269
+ T LSA A LG L+ G+ G+ + C ++G +L+ VF
Sbjct: 280 AAVVTALSAAARLGLLEHGKFVHNVVQRSGMPV-CMNVGAALVDMYAKCGCVAVAREVFD 338
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+R +++ WN++ LA HG +A+ +F+R E + P
Sbjct: 339 GMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSP 378
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ +A +F+ M D+ +W MI + + R+A++ F + G
Sbjct: 319 ALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSP 378
Query: 231 DQVTMATVLSACAHLGALDLGR 252
VT VL+ C+ G + GR
Sbjct: 379 TNVTFVGVLNGCSRSGLVAEGR 400
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 60/331 (18%)
Query: 34 LKKCSSIKELECVYATIV--KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV 91
L +C +I+EL+ ++A + + N K F S+ + F +F ++ P++
Sbjct: 27 LTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSY--AEFGRPADAGRLFDEIPHPDI 84
Query: 92 FVYHAFSSLR----HPLQAIAFYLYM---------------------LRAEVLLTTVHGQ 126
+ + SL H +AI+ + + L + + + VHG
Sbjct: 85 ISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGL 144
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+++ G S + V A+VD Y KF +R V FD M + TW +M+ Y +
Sbjct: 145 IFRCGLDSELVVCNALVDMYCRCGKFEPARTV----FDRMLVKDEVTWGSMLYGYMKCVG 200
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ F +MP SWT +IT + Q+KQ +AL+ F K G + +T+ VLSA
Sbjct: 201 VDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSA 260
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA +GALDLGR I Y S+ + VF +++ K+ W
Sbjct: 261 CADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTW 320
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + G +A+ +F M + PN
Sbjct: 321 TTMISSFTVQGNGRKAVELFWDMLRSGILPN 351
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F ++ D +WTTMI+S++ R+A++ F +SG
Sbjct: 290 NALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL 349
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-----KNLLCWNSITE 284
+ VT +VLSAC+H G + GR + F K+RE L + + +
Sbjct: 350 PNSVTFVSVLSACSHAGLIQEGREL-------------FDKMREVYHIDPRLEHYGCMVD 396
Query: 285 ALAIHGFAHEALGMFDRMTYE 305
L G EA + D M E
Sbjct: 397 LLGRGGLLEEAEALIDHMDVE 417
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +G + + A+VD YS ++RR F+ MP + +W +M+ A
Sbjct: 168 VHCLMLVSGSPVDLILGGALVDMYSKCGDLC----MARRCFEMMPIKSVVSWTSMLCAQT 223
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A F+ MP + SW TMI+ Y Q Q+ EALD + + + G D+ T+
Sbjct: 224 KHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVP 283
Query: 238 VLSACAHLGALDLGRGIQIYCR--------SLGRSLL--------------VFFKLREKN 275
VLSAC +G L +G+ + +Y R SL SLL +F ++ +N
Sbjct: 284 VLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRN 343
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ WN I LA+HG A +A+ F M N P+G
Sbjct: 344 VVSWNVIIGGLAMHGRALDAITFFRSMV-RNTSPDG 378
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 101/272 (37%), Gaps = 77/272 (28%)
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLT---------------- 121
+F + +P+ +Y+ A+ + P +A+ + MLR VL
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 122 -----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
VHG K GF VFV A++ +Y+ + +SRR FDEM R +WN+
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRR----FFDEMAGRNVVSWNS 116
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
MI YA Q REA F + ++ G D+ T+A
Sbjct: 117 MIGGYA--------------------------QAGDTREACALFGEMRRQGFLGDEFTLA 150
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
++L AC+ G L+ GR + C L + F + K
Sbjct: 151 SLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIK 210
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
+++ W S+ A HG A FD M N
Sbjct: 211 SVVSWTSMLCAQTKHGSVDAARCWFDHMPERN 242
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 30/216 (13%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+ H G VFVQTA+VD Y+ N +S ++ F EMP + N +I
Sbjct: 194 SQTHCHALVRGMLGDVFVQTALVDFYA-KNGDMDSALMA---FKEMPVKDPIPMNCLITG 249
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y++ ++ LF+ MP SW +MI Y+ +FREAL F++ + G + +T+
Sbjct: 250 YSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITI 309
Query: 236 ATVLSACAHLGALDLGRGIQ---------------------IYCRSLGRSLLVFFKLREK 274
TV S CA G LD GR + + CR++ + F ++ +
Sbjct: 310 TTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRR 369
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ W+++ + +G HE+L +F+RM N +PN
Sbjct: 370 DVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPN 405
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 22/144 (15%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F++MP D+ +W+TMI YSQN + E+L+ F + K + ++VT+ VLSACA LG+
Sbjct: 363 FDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+LG I Y C + R+ VF ++ +K ++ WNS+ L
Sbjct: 423 ELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGL 482
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A++GFA +A+ ++ +M + ++PN
Sbjct: 483 ALNGFAEDAIALYRKMVGDGIQPN 506
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +FN+M + +W +MI + N +A+ + K G
Sbjct: 445 SALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQ 504
Query: 230 SDQVTMATVLSACAHLGALDLG 251
++VT +L+AC H G +D G
Sbjct: 505 PNEVTFVALLTACTHAGLVDKG 526
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 147/344 (42%), Gaps = 95/344 (27%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTN-----ANLDCFLAKQFISFCTSRFHFIDYTI 80
R+H A L+ CS + +L+ ++A ++T A L FL + + +S F ++Y
Sbjct: 26 RVH--ATVLQTCSDMSQLKQLHAFTLRTTYPEEPATL--FLYGKILQL-SSSFSDVNYAF 80
Query: 81 LVFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYML-RAE----------VLLTT-- 122
VF ++ + F+++ + +A Y ML R E VL
Sbjct: 81 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 140
Query: 123 ---------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
VH Q+ K+GF V+V ++ Y ++R++FDEMPER +
Sbjct: 141 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL----DLARKVFDEMPERSLVS 196
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
WN+MIDA R E + AL F + ++S D
Sbjct: 197 WNSMIDALVRFGE--------------------------YDSALQLFREMQRSFE-PDGY 229
Query: 234 TMATVLSACAHLGALDLGRG-----------------------IQIYCR--SLGRSLLVF 268
TM +VLSACA LG+L LG I++YC+ SL + VF
Sbjct: 230 TMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVF 289
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT--YENVRPN 310
+++++L WN++ A HG A EA+ FDRM ENVRPN
Sbjct: 290 QGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPN 333
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSG 227
N++I+ Y R+AE +F M D+ SW MI ++ + + EA++ F++ K+
Sbjct: 270 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 329
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ VT +L AC H G ++ GR Q + ++V E L + I + +A
Sbjct: 330 VRPNSVTFVGLLIACNHRGFVNKGR--QYF------DMMVRDYCIEPALEHYGCIVDLIA 381
Query: 288 IHGFAHEALGM 298
G+ EA+ M
Sbjct: 382 RAGYITEAIDM 392
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYA------RLAELLFNKM-----PAWDIRSWTTMITSYSQ 209
R+FD + WNT+I A A A +L+ KM + D ++ ++ + +
Sbjct: 81 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 140
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
F E + K G G D ++ G LDL R VF
Sbjct: 141 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK-------------VFD 187
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ E++L+ WNS+ +AL G AL +F M + P+G
Sbjct: 188 EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDG 228
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 60/331 (18%)
Query: 34 LKKCSSIKELECVYATIV--KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV 91
L +C +I+EL+ ++A + + N K F S+ + F +F ++ P++
Sbjct: 27 LTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSY--AEFGRPADAGRLFDEIPHPDI 84
Query: 92 FVYHAFSSLR----HPLQAIAFYLYM---------------------LRAEVLLTTVHGQ 126
+ + SL H +AI+ + + L + + + VHG
Sbjct: 85 ISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGL 144
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+++ G S + V A+VD Y KF +R V FD M + TW +M+ Y +
Sbjct: 145 IFRCGLDSELVVCNALVDMYCRCGKFEPARTV----FDRMLVKDEVTWGSMLYGYMKCVG 200
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ F +MP SWT +IT + Q+KQ +AL+ F K G + +T+ VLSA
Sbjct: 201 VDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSA 260
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA +GALDLGR I Y S+ + VF +++ K+ W
Sbjct: 261 CADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTW 320
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + G +A+ +F M + PN
Sbjct: 321 TTMISSFTVQGNGRKAVELFWDMLRSGILPN 351
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F ++ D +WTTMI+S++ R+A++ F +SG
Sbjct: 290 NALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGIL 349
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-----KNLLCWNSITE 284
+ VT +VLSAC+H G + GR + F K+RE L + + +
Sbjct: 350 PNSVTFVSVLSACSHAGLIQEGREL-------------FDKMREVYHIDPRLEHYGCMVD 396
Query: 285 ALAIHGFAHEALGMFDRMTYE 305
L G EA + D M E
Sbjct: 397 LLGRGGLLEEAEALIDHMDVE 417
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 153/331 (46%), Gaps = 46/331 (13%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC 69
+ +F +NS V+ + + + + KC++I + ++ +N +L +A ++
Sbjct: 258 VYAFIRNS-GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQG 316
Query: 70 TSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWK 129
+R + +++ ++ + + A SS LR + + HG V +
Sbjct: 317 LTREALGVFNLMMDSGVRPDRISMLSAISSCSQ-----------LRNILWGKSCHGYVLR 365
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
NGF S + A++D Y ++ + + R+FD M + TWN+++ Y E+
Sbjct: 366 NGFESWDNICNALIDMYMKCHR----QDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACA 243
F MP +I SW T+I+ Q F EA++ F + + G +D VTM ++ SAC
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACG 481
Query: 244 HLGALDLGR---------GIQIYCRSLGRSLL--------------VFFKLREKNLLCWN 280
HLGALDL + GIQ+ R LG +L+ +F L +++ W
Sbjct: 482 HLGALDLAKWIYYYIEKNGIQLDVR-LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 540
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ A+A+ G A A+ +FD M + ++P+G
Sbjct: 541 AAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 55/220 (25%)
Query: 115 RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
RA+ +HG + K G++ +FVQ ++V Y+ + +R+V FDEM ER +W
Sbjct: 148 RAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKV----FDEMSERNVVSW 203
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQF-REALDAFNK-TKKSGTGSDQ 232
+MI YAR + F ++A+D F + + +
Sbjct: 204 TSMICGYAR---------------------------RDFAKDAVDLFFRMVRDEEVTPNS 236
Query: 233 VTMATVLSACAHLGALDLGR---------GIQI-------------YCRSLGRSLLVFFK 270
VTM V+SACA L L+ G GI++ C ++ + +F +
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL N++ G EALG+F+ M VRP+
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-- 257
+ ++I Y+ + EA+ F + SG D+ T LSACA A G GIQI+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRA--KGNGIQIHGL 159
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C L + VF ++ E+N++ W S+ A FA +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 296 LGMFDRMTY-ENVRPN 310
+ +F RM E V PN
Sbjct: 220 VDLFFRMVRDEEVTPN 235
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++D ++R + +FN + D+ +WT I + + A++ F+ + G
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D V L+AC+H G + G+ I Y S+L + +++ + + + L G
Sbjct: 570 DGVAFVGALTACSHGGLVQQGKEI-FY------SMLKLHGVSPEDVH-YGCMVDLLGRAG 621
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA+ + + M E PN
Sbjct: 622 LLEEAVQLIEDMPME---PN 638
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 131/309 (42%), Gaps = 46/309 (14%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
++A S++E + V+A +VK LD F+ FI F + D +M
Sbjct: 163 LVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSD------ARMVF 216
Query: 89 PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
N FV S Y+ E+ L +++ + +F +M+ Y
Sbjct: 217 DNGFVLDLVS------WNSMIDGYVKNGELGLAR---EIFDEMYERDIFTWNSMISGYVG 267
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTM 203
+R LFD+MP R +WN MID +AR+ ++ F++MP ++ SW M
Sbjct: 268 VGDM----EAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVM 323
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------ 257
+ Y + K++ + L F+ D+ ++ +VL+ACA L LD G+ + Y
Sbjct: 324 LALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGI 383
Query: 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
C ++ + VF K+ EK+++ WNS+ IHG +AL MF
Sbjct: 384 KPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFRE 443
Query: 302 MTYENVRPN 310
M PN
Sbjct: 444 MEKGGPMPN 452
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LA +F+KMP + SW +MI Y + +AL+ F + +K G + T +VLSAC+
Sbjct: 405 LAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACS 464
Query: 244 HLG 246
H G
Sbjct: 465 HSG 467
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 53/271 (19%)
Query: 72 RFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
R+ ++ +F +M NV Y A ++ + QA A + M + V+ TV
Sbjct: 152 RYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTV---- 207
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR---- 183
M+ Y + KF E+ LF++MP++ MI Y +
Sbjct: 208 --------------MISGYVENGKFDEAEN----LFEQMPDKNIVAMTAMITGYCKEGKT 249
Query: 184 -LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A++LF+++P D+ SW MIT Y+QN EAL ++ K G D T+ +VL+AC
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309
Query: 243 AHLGALDLGRG--------------------IQIYCR--SLGRSLLVFFKLREKNLLCWN 280
+ L +L GR I +YC+ S+ S L F ++ +++ WN
Sbjct: 310 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 369
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ A A HGF AL F M V P+G
Sbjct: 370 AMIAAFARHGFYDRALASFGEMRSNRVEPDG 400
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+LFDEMP R +WN++I Y + ++ LF MP ++ SW +MI ++++
Sbjct: 66 ARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERI 125
Query: 214 REALDAFNKTKKSGTGS-----------DQVTMATVL-SACAHLGALDLGRGIQIYCR-- 259
EA F + T S D+V A+ L + + Y +
Sbjct: 126 DEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIG 185
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ ++ +F + +KN++ W + +G EA +F++M +N+
Sbjct: 186 EIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI 233
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q+ K G +++ S E R+ + E + + N +I Y
Sbjct: 286 LHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYC 345
Query: 183 RLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ EL F ++ D+ SW MI +++++ + AL +F + + + D +T +
Sbjct: 346 KCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLS 405
Query: 238 VLSACAHLGAL 248
+LSAC H G +
Sbjct: 406 LLSACGHAGKV 416
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 149/341 (43%), Gaps = 88/341 (25%)
Query: 21 SVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYT 79
SV F++ H C+SI + + +A +++T+ + + + ISF S ++Y
Sbjct: 13 SVDFLKTH--------CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYA 64
Query: 80 ILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV----------------- 118
+F QMQ P+ F+ + ++ ++P +A++ Y +M+ V
Sbjct: 65 RKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARL 124
Query: 119 ----LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
L H +V KNGF S +FV A++ Y F + +FDE R TW
Sbjct: 125 GAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSF----GCACDVFDESTVRDVVTW 180
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
N MI+ A L + L K A+D+ LD TK D+VT
Sbjct: 181 NIMIN--AHLNKGLSEK--AFDL-------------------LDEM--TKLDNLRPDEVT 215
Query: 235 MATVLSACAHLGALDLGRGIQIY-------------------------CRSLGRSLLVFF 269
M +++ ACA LG L+ G+ + Y C S+ +L VF
Sbjct: 216 MVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFR 275
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++R +N+ WN++ LA+HG +A+ +FD+M ++ + P+
Sbjct: 276 RMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPD 316
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LA +F +M ++ +W +I + + +A+ F++ +
Sbjct: 256 ALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMP 315
Query: 231 DQVTMATVLSACAHLGALDLG 251
D VT +L AC+H G +D G
Sbjct: 316 DDVTFIALLCACSHAGLVDEG 336
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD +P R TW TMID YA+L A+ LF++MP
Sbjct: 222 NSMIDGYVKHGRIEDAKD----LFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 277
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QN+ EAL+ F + K+S D+ T+ VLSA A LG L
Sbjct: 278 RDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 337
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LAIHG
Sbjct: 338 MHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGL 397
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 398 GESAFDMLLQIERRSIKPD 416
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N+MID Y
Sbjct: 109 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCL----GFARQIFDRMPQRDSVSYNSMIDGYV 164
Query: 183 RLAEL-----LFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ + LF+ MP ++ SW ++I+ Y+Q E +D +K D ++
Sbjct: 165 KCGSIESASELFDLMPREMKNLISWNSLISGYAQTS---EGVDIASKLFAEMPEKDLISW 221
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ G ++ + + F + ++++ W ++ + A GF H+A
Sbjct: 222 NSMIDGYVKHGRIEDAKDL-------------FDMVPRRDVVTWATMIDGYAKLGFVHQA 268
Query: 296 LGMFDRMTYENV 307
+FD+M + +V
Sbjct: 269 KTLFDQMPHRDV 280
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPE 168
VF TAMV Y + E+RRV +R LF+ MP
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 244
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
+ ++WNTMI YA+ ++ F++MP D SW +I Y+Q+ EAL F +
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCR--SL 261
K+ G ++ T + LS CA + AL+LG+ + +YC+ ++
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +VF + EK ++ WN++ A HGF EAL +F+ M + P+
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPD 413
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y N+ ++R + FD MPER +WNTMI YA+ EL LF + P D
Sbjct: 129 MMGGYVKRNRLVDARGI----FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ +WT M++ Y QN EA F+ + + S +A +
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY-----------------V 227
Query: 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
C+ + ++ +F + +N+ WN++ A +G +A FDRM
Sbjct: 228 QCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 273
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSY 207
+ + R +R LFD+MPER +WN M+ YA + A+ +F++MP + SW M+ +Y
Sbjct: 43 YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAY 102
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLV 267
QN + +A F +S + ++ ++ L RGI
Sbjct: 103 VQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGI------------- 145
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
F ++ E++ + WN++ A +G EA +F+ +V
Sbjct: 146 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV 185
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L VHG+V K G S +V A++ Y +
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCG-------------------------NID 365
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
DAY ++F + ++ SW TMI Y+++ +EAL F KK+G D VTM V
Sbjct: 366 DAY-----IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 420
Query: 239 LSACAHLGALDLG 251
LSAC+H G +D G
Sbjct: 421 LSACSHTGLVDKG 433
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 114/273 (41%), Gaps = 86/273 (31%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------- 158
H V+K G FV A++D YS ++ ++++V
Sbjct: 227 HTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEV 286
Query: 159 --SRRLFDEMPERKFATWNTMIDAYAR--------------------------------- 183
+R +FDEMPE+ +WNTM+D YA+
Sbjct: 287 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKG 346
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+A ++F+KMPA ++ +WT M+++ +Q EA F + K++ D V + ++L+
Sbjct: 347 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILA 406
Query: 241 ACAHLGALDLGRGI--QIYCRSLGRSLLVFFKLR---------------------EKNLL 277
ACA G L LG+ I + R LGRS LV L EK+ +
Sbjct: 407 ACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSV 466
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN I A+HG +AL +F +M + P+
Sbjct: 467 SWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPD 499
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMPAWDIRSWTTMITSYS 208
+R+ R + R N ++D + + A+ +F+ ++ D SW +I ++
Sbjct: 417 GKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFA 476
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ +AL+ F + K+ G D VT+ VLSAC H+G ++ GR
Sbjct: 477 MHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGR 520
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 142/345 (41%), Gaps = 66/345 (19%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT--SRFHFIDYTILV 82
+++H+ +KC S+ +L ++ I++ + L I+FC S + Y + +
Sbjct: 20 VQMHVEPFHFEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKL 79
Query: 83 FPQMQEPNVFVYHAF------SSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
F + +P+ F+Y+ S L + Y +ML+ VL
Sbjct: 80 FDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQ 139
Query: 123 ----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
+H ++K GF + +++ Y F++ +RR+F +P +W ++I
Sbjct: 140 HGMQIHAHLFKFGFGAHSVCLNSLIHMYVT----FQALEEARRVFHTIPHPDSVSWTSLI 195
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQ 232
Y++ + +F MP + SW M+ +Y Q +F EA F++ K D+
Sbjct: 196 SGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDK 255
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
T+LSAC LGALD G+ I Y C L ++L VF
Sbjct: 256 FVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHS 315
Query: 271 LREKNLLC-----WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L L C WN + LA+HG A+ +F M + V P+
Sbjct: 316 L---PLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPD 357
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 176 TMIDAYARLAEL-----LFNKMPA---WDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
++D Y + L +F+ +P W I SW MI + + A+ F + ++
Sbjct: 295 AIVDMYCKCGCLEKALQVFHSLPLPCRW-ISSWNCMIGGLAMHGNGEAAIQLFKEMERQR 353
Query: 228 TGSDQVTMATVLSACAHLGALDLGR 252
D +T +L+ACAH G ++ GR
Sbjct: 354 VAPDDITFLNLLTACAHSGLVEEGR 378
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 53/271 (19%)
Query: 72 RFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
R+ ++ +F +M NV Y A ++ + QA A + M + V+
Sbjct: 152 RYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV-------S 204
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR---- 183
W T M+ Y + KF E+ LF++MP++ MI Y +
Sbjct: 205 W-----------TVMISGYVENGKFDEAEN----LFEQMPDKNIVAMTAMITGYCKEGKT 249
Query: 184 -LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A++LF+++P D+ SW MIT Y+QN EAL ++ K G D T+ +VL+AC
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309
Query: 243 AHLGALDLGRG--------------------IQIYCR--SLGRSLLVFFKLREKNLLCWN 280
+ L +L GR I +YC+ S+ S L F ++ +++ WN
Sbjct: 310 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 369
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ A A HGF AL F M V P+G
Sbjct: 370 AMIAAFARHGFYDRALASFGEMRSNRVEPDG 400
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
+R++FDEMP R +WN++I Y + ++ LF MP ++ SW +MI ++++
Sbjct: 65 AARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDER 124
Query: 213 FREALDAFNKTKKSGTGS-----------DQVTMATVL-SACAHLGALDLGRGIQIYCR- 259
EA F + T S D+V A+ L + + Y +
Sbjct: 125 IDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKI 184
Query: 260 -SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ ++ +F + +KN++ W + +G EA +F++M +N+
Sbjct: 185 GEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI 233
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q+ K G +++ S E R+ + E + + N +I Y
Sbjct: 286 LHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYC 345
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +EL F ++ D+ SW MI +++++ + AL +F + + + D +T +
Sbjct: 346 KCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLS 405
Query: 238 VLSACAHLGAL 248
+LSAC H G +
Sbjct: 406 LLSACGHAGKV 416
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 80/301 (26%)
Query: 60 FLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFVYHAF---SSLRHPLQAIAFYLY--- 112
F + ++FC S F I+Y VF Q+ PN+F +++ S H L +L+
Sbjct: 23 FALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKL 82
Query: 113 ---------------MLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
+L+A ++T VH V K+GF S +FVQT++V+ Y
Sbjct: 83 TETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKC-- 140
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211
E +R++F+EMP R ++ +WT MI+ +++
Sbjct: 141 --EEIGFARKVFEEMPVR--------------------------NLVAWTAMISGHARVG 172
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
EA++ F + +K+G D +T+ +V+SACA GALD+G + Y
Sbjct: 173 AVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELST 232
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C + R+ VF + K+ W+S+ A HG A +A+ F +M V P
Sbjct: 233 ALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTP 292
Query: 310 N 310
+
Sbjct: 293 D 293
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V ++G V ++ A+VD + ++ + FD MP + +W +M+ AYA
Sbjct: 255 VHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEI----FDGMPIKDVYSWTSMVSAYA 310
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +L LF ++P + SW+ M+ +YSQ EA+ FN +G T+ +
Sbjct: 311 KCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVS 370
Query: 238 VLSACAHLGALDLGRG---------------------IQIY--CRSLGRSLLVFFKLREK 274
VLSACA LG LD+GR I ++ C +G + +F + +K
Sbjct: 371 VLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDK 430
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ WN++ A A+HG + EAL +F + + P+
Sbjct: 431 NVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPD 466
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ID +A+ ++ LF M ++ SW TMI +++ + Q EAL F K K G
Sbjct: 405 NAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIF 464
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D++T VLSAC+H G + GR
Sbjct: 465 PDEITYIGVLSACSHSGLVSEGR 487
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 77/335 (22%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDY 78
T+ + + H + + L+ C+S + L + A + + F A + ++FC S + +
Sbjct: 24 TNRNLVVTHPLLSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLAFCALSDPPRLAH 83
Query: 79 TILVFPQMQE-PNVFVY----HAFSSLRHPLQAIAFYLYMLR------------AEVLLT 121
V Q E PN ++ F P A+A + +LR A T
Sbjct: 84 AAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAAT 143
Query: 122 T-------VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
T +H +K GF V V A+V Y+ S ++R+ LFDEM +R +
Sbjct: 144 TSSSPAEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARK----LFDEMADRDVVS 199
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
W T++D YAR +P R + M+ + G ++V
Sbjct: 200 WTTLVDGYAR------GGLPDEAWRVFCRMVVA-------------------GGGWPNEV 234
Query: 234 TMATVLSACAHLGALDLGR---------GIQIY-------------CRSLGRSLLVFFKL 271
T+ SA +G L LGR G+++ C + + +F +
Sbjct: 235 TLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGM 294
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
K++ W S+ A A G A +F + N
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRN 329
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 133/311 (42%), Gaps = 80/311 (25%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVFVYHAF- 97
+K+L+ V+A ++ T+ L + I+ C++R I YT L+F + P+ F++++
Sbjct: 22 VKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVI 79
Query: 98 ---SSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQVWKNGFS 133
S LR PL +A+Y ML + V + VH +GF
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFG 139
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP 193
+VQ A+V YS +R++FD MPE+ WN
Sbjct: 140 LDTYVQAALVTFYSKCGDM----EAARQVFDRMPEKSVVAWN------------------ 177
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
++++ + QN +A+ F + ++SG D T ++LSACA GA+ LG
Sbjct: 178 --------SLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSW 229
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ Y C +G++ VF K++E N+ W ++ A HG+
Sbjct: 230 VHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 292 AHEALGMFDRM 302
+A+ +F++M
Sbjct: 290 GKQAVDLFNKM 300
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LLF +P D + ++I S S+ + + + + S T +V+ +CA L
Sbjct: 62 LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL +G+G+ + C + + VF ++ EK+++ WNS+
Sbjct: 122 ALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVS 181
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
+G A +A+ +F +M P+
Sbjct: 182 GFEQNGLAEDAIRVFYQMRESGFEPD 207
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 80/301 (26%)
Query: 60 FLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFVYHAF---SSLRHPLQAIAFYLY--- 112
F + ++FC S F I+Y VF Q+ PN+F +++ S H L +L+
Sbjct: 23 FALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKL 82
Query: 113 ---------------MLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
+L+A ++T VH V K+GF S +FVQT++V+ Y
Sbjct: 83 TETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKC-- 140
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211
E +R++F+EMP R ++ +WT MI+ +++
Sbjct: 141 --EEIGFARKVFEEMPVR--------------------------NLVAWTAMISGHARVG 172
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
EA++ F + +K+G D +T+ +V+SACA GALD+G + Y
Sbjct: 173 AVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELST 232
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C + R+ VF + K+ W+S+ A HG A +A+ F +M V P
Sbjct: 233 ALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTP 292
Query: 310 N 310
+
Sbjct: 293 D 293
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++D YA+ A+ +F MP D +W++MI ++ + ++A+DAF + ++
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVT 291
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VT VLSACAH G + GR
Sbjct: 292 PDHVTFLAVLSACAHGGLVSRGR 314
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 154/338 (45%), Gaps = 69/338 (20%)
Query: 10 ITSF---KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFI 66
+TSF K N+ TS+ + H+I+ + KC+++KEL+ + A +KTN + + +FI
Sbjct: 8 LTSFSLTKPNTETTSLLPLP-HLIS-LIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFI 65
Query: 67 SFCTSRF--HFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLR----- 115
+FCTS +++ +F Q+ +PN+ +++ ++ L PL+ I + LR
Sbjct: 66 NFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKV 125
Query: 116 -AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
A +H K G S ++V +++ Y+ SRRV FD++ E +
Sbjct: 126 KALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRV----FDKIDEPCVVAY 181
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
N +I + AR N + EAL F + ++ G VT
Sbjct: 182 NAIIMSLAR--------------------------NNRANEALALFRELQEIGLKPTDVT 215
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
M VLS+CA LG+LDLGR + Y C SL ++ VF +
Sbjct: 216 MLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP 275
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ W++I A A HG +A+ M + M E V+P+
Sbjct: 276 KRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPD 313
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVF 83
F R + +++K + K+L C VK + + ++ I+ T+ ID + VF
Sbjct: 115 FRRCLRLVSKVKALAEGKQLHCF---AVKLGVSDNMYVVPTLINMYTA-CGDIDASRRVF 170
Query: 84 PQMQEPNVFVYHAF--SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
++ EP V Y+A S R+ A L+ E+ L + V A
Sbjct: 171 DKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLV------VLSSCA 224
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
++ + E V + FD R T+ID YA+ L +F MP D
Sbjct: 225 LLGSLDLGRWMHE--YVKKYGFD----RYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRD 278
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
++W+ +I +Y+ + +A+ N+ KK D++T +L AC+H G ++ G
Sbjct: 279 TQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEG 333
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-- 184
+ NGF+ + + AM+D Y +++ LF++M E+ +W TM+D +A+L
Sbjct: 300 IENNGFTEHLILNNAMLDMYVKCGCINDAKD----LFNKMSEKDIVSWTTMLDGHAKLGN 355
Query: 185 ---AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLS 240
A +F+ MP +W +I++Y QN + R AL F++ + S D+VT+ L
Sbjct: 356 YDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALC 415
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
A A LGA+D G I +Y C +L +++ VF + K++
Sbjct: 416 ASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYV 475
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
W+++ ALA++G AL +F M ++PN
Sbjct: 476 WSAMIGALAMYGQGKAALDLFSSMLEAYIKPNA 508
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 135/321 (42%), Gaps = 79/321 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVF 92
+ +C++ +L+ ++A +++T+ D + A + ++ + S + Y VF Q+ +PN++
Sbjct: 79 IDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLY 138
Query: 93 VYH----AFSSLRHPLQAIAFYLYML--------------------RAEVLL--TTVHGQ 126
++ ++S P Q+ +L+ML R +VL + +HG
Sbjct: 139 CWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGM 198
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V K SS +F+ ++++ Y S P+ LA
Sbjct: 199 VIKASLSSDLFILNSLINFYGSSGA---------------PD---------------LAH 228
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F MP D+ SW MI +++ +AL F + + + +TM +VLSACA
Sbjct: 229 RVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKI 288
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
L+ GR I Y C + + +F K+ EK+++ W ++ +
Sbjct: 289 DLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLD 348
Query: 285 ALAIHGFAHEALGMFDRMTYE 305
A G EA +FD M ++
Sbjct: 349 GHAKLGNYDEAHCIFDAMPHK 369
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQ--NK-QFRE 215
++ +F+++P+ WNT+I YA ++ P + M+ S S+ NK F
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSD------PTQSFLIFLHMLHSCSEFPNKFTFPF 178
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL--VFFKLRE 273
A ++ K GS V V+ A L I Y S L VF +
Sbjct: 179 LFKAASRLKVLHLGS--VLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPG 236
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+++ WN++ A A+ G +AL +F M ++V+PN
Sbjct: 237 KDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPN 273
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++D YA+ L +F+ + D+ W+ MI + + Q + ALD F+ ++
Sbjct: 447 SLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKP 506
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT +L AC H G ++ G
Sbjct: 507 NAVTFTNILCACNHAGLVNEGE 528
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPE 168
VF TAMV Y + E+RRV +R LF+ MP
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 325
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
+ ++WNTMI YA+ ++ F++MP D SW +I Y+Q+ EAL F +
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCR--SL 261
K+ G ++ T + LS CA + AL+LG+ + +YC+ ++
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +VF + EK ++ WN++ A HGF EAL +F+ M + P+
Sbjct: 446 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPD 494
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y N+ ++R + FD MPER +WNTMI YA+ EL LF + P D
Sbjct: 210 MMGGYVKRNRLVDARGI----FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 265
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ +WT M++ Y QN EA F+ + + S +A +
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY-----------------V 308
Query: 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
C+ + ++ +F + +N+ WN++ A +G +A FDRM
Sbjct: 309 QCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 354
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 26/168 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
AM+ ++KF+ ++R+LF++MP R +WN MI R A LLF++MP
Sbjct: 84 NAMISGCLSNDKFY----LARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPE 139
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ SW M++ Y+QN +EA + F++ + ++ +L+A G ++ R
Sbjct: 140 RDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLAAYVQNGRIEDAR-- 193
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+F + L+ WN + +A G+FDRM
Sbjct: 194 -----------RLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM 230
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L VHG+V K G S +V A++ Y +
Sbjct: 412 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCG-------------------------NID 446
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
DAY ++F + ++ SW TMI Y+++ +EAL F KK+G D VTM V
Sbjct: 447 DAY-----IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 501
Query: 239 LSACAHLGALDLG 251
LSAC+H G +D G
Sbjct: 502 LSACSHTGLVDKG 514
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 22/145 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
RLF+ MP R +WN MI LA LF KMP D+ SW MI+ + + R
Sbjct: 70 RLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRA 129
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A F++ + D V+ +LS A G + + I F ++ KN
Sbjct: 130 ARLLFDQMPE----RDVVSWNAMLSGYAQNGYVKEAKEI-------------FDEMPCKN 172
Query: 276 LLCWNSITEALAIHGFAHEALGMFD 300
+ WN + A +G +A +F+
Sbjct: 173 SISWNGMLAAYVQNGRIEDARRLFE 197
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 48/317 (15%)
Query: 26 RIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85
R+ N L C S + + A ++ N + + +A FI+ C S +D +L+F
Sbjct: 10 RVTKFLNLLTNCCSPCHIHQIQAQLIVQNLHSNTTIAHHFITACQSLG-LLDSALLLFTH 68
Query: 86 MQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
+P+VF+ + AFS P + Y +M +L N F+ P F+ +
Sbjct: 69 HSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSIL---------PNNFTFP-FLLKS 118
Query: 142 MVDNYSYS-NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
+ D S + + V FD++ N++++ YA ++ +F++MP
Sbjct: 119 LADFKGLSEGQCIHTHVVKLGQFDDI-----YVQNSLLNVYASCGDMGLCMRVFDEMPHR 173
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D+ SWT +IT Y +++ +AL AF + + +G + VTM LSACA GAL++G I
Sbjct: 174 DVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIH 233
Query: 256 IYCRSLG----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
+ R G L+VF ++EKN+ WNS+ + LA+
Sbjct: 234 EFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGA 293
Query: 294 EALGMFDRMTYENVRPN 310
EA+ F RM E ++ +
Sbjct: 294 EAVWWFYRMEQEGIKAD 310
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 77 DYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV 136
D ++ F QMQ V H ++ + L A A + A + +H + ++G+ V
Sbjct: 192 DDALIAFEQMQYAGVVPNHV--TMVNALSACADF----GALEMGVWIHEFIRRSGWEFDV 245
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD 196
+ T+++D Y + E V F M E+ TWN++I A LA
Sbjct: 246 ILGTSLIDMYGKCGRIEEGLVV----FRSMKEKNVFTWNSLIKGLA-LA----------- 289
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ EA+ F + ++ G +D+VT+ VL AC+H G + +GR QI
Sbjct: 290 --------------RSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGR--QI 333
Query: 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ SL FF K+ C + + LA G EA+ + RM +E PN
Sbjct: 334 F-GSLMNGKYEFFP-GVKHYAC---VIDLLARAGILQEAMEVMTRMPFE---PN 379
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 33/243 (13%)
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
H SL L+++A + A VL TVH K G V V A++ ++ F
Sbjct: 73 HTLPSL---LKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHA---GFLG 126
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
S L +T+NT+I AYAR L LF++MPA + SW+ M+ Y Q
Sbjct: 127 SLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQ 186
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
REAL F + + D + VL+ACA GAL+ G+ + Y ++ G + +FF
Sbjct: 187 AGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFF 246
Query: 270 ----------------------KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+++ KN+L W ++ + LA+HG EA+ +F +M +
Sbjct: 247 GTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGI 306
Query: 308 RPN 310
RP+
Sbjct: 307 RPD 309
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 38/183 (20%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG + +G +F TA+VD YS +
Sbjct: 231 VHGYLKAHGIKINLFFGTALVDMYSKCGEV------------------------------ 260
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+LA +F +M ++ +WTTMI + + + EA+ F + + SG D + VL AC
Sbjct: 261 QLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCAC 320
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G +D G R L S++ + ++ K + + + + LA +GF +EA M +M
Sbjct: 321 THAGLVDKG-------RELFDSMVRKYGIKPK-IEHYGCMVDLLARNGFLYEAKEMIQKM 372
Query: 303 TYE 305
E
Sbjct: 373 PME 375
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 30/216 (13%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T H G VFVQTA+VD Y+ N +S ++ F+EMP + N +I
Sbjct: 98 TQTHCHALVRGMLGDVFVQTALVDFYA-KNGNMDSAVMA---FEEMPIKDPIPMNCLITG 153
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+R ++ LF+ MP SW +MI Y+ +F+EAL F++ + G + +T+
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213
Query: 236 ATVLSACAHLGALDLGRGIQ---------------------IYCRSLGRSLLVFFKLREK 274
TV S CA G L+ GR + + CR++ + F ++ +
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRR 273
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ W+++ + +G HE+L +F+RM N +PN
Sbjct: 274 DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPN 309
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 22/144 (15%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F++MP D+ +W+TMI YS N + E+L+ F + K + ++VT+ VLSACA LG+
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+LG I Y C + R+ VF ++ +K ++ WNS+ L
Sbjct: 327 ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGL 386
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A++GFA +A+ ++ M + V+PN
Sbjct: 387 ALNGFAEDAIALYGEMVGDGVQPN 410
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +F++M + +W +MI + N +A+ + + G
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQ 408
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+++T +L+AC H G +D G
Sbjct: 409 PNEITFLALLTACTHAGLVDKG 430
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LR L +HG V +G V + ++D Y ++ V F+ + ++ +
Sbjct: 235 LRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSV----FEGIDKKTIVS 290
Query: 174 WNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W TMI YA+ A +F++MP D+ W ++T Y Q K+ +EAL F+ +++
Sbjct: 291 WTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMV 350
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
D +TM +LSAC+ LGAL++G + Y C ++ +++
Sbjct: 351 EPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIR 410
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ EKN L W ++ LA HG A A+ F RM ++P+
Sbjct: 411 VFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPD 454
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACA 243
A LF+ D+ SW T+I Y + REAL+ F + G D+VTM V+S A
Sbjct: 174 ARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSA 233
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
L L+LGR + Y C L R+ VF + +K ++ W +
Sbjct: 234 QLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTT 293
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRP 309
+ A G +A +FD M +V P
Sbjct: 294 MIVGYAQFGLMDDARKVFDEMPERDVFP 321
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 123/293 (41%), Gaps = 46/293 (15%)
Query: 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-----SRFHFIDYTIL 81
++++ + KC ++ + V+ I K K +S+ T ++F +D
Sbjct: 260 MNVVMDMYIKCGDLERAKSVFEGIDK----------KTIVSWTTMIVGYAQFGLMDDARK 309
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
VF +M E +VF ++A + + +A+ + M A V + N S+
Sbjct: 310 VFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDI---TMVNLLSA--C 364
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
Q ++ + + + + RRVS + ++D Y++ + +F ++
Sbjct: 365 SQLGALEMGMWVHHYIDRRRVSLSVM---------LGTNLVDMYSKCGNIEKAIRVFKEI 415
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P + +WT MI+ + + A+ F + + G D++T VLSAC H G + G+
Sbjct: 416 PEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQ 475
Query: 253 GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
+ + SL+V E+ + ++ + + L G+ EA + + M E
Sbjct: 476 --EFF------SLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPME 520
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 63/326 (19%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFL-------AKQFISFCTSRFHFIDYTILVFPQMQ 87
K CS I EL +TI+ NA +D ++ A+Q C ++ + TI+
Sbjct: 252 KVCSYISELGMELSTIM-VNALVDMYMKCGDICAARQIFDECANKNLVMYNTIM------ 304
Query: 88 EPNVFVYHAFSS----------LRHPLQAIAFYLYMLRAEVLLTTV------HGQVWKNG 131
+ +V+H ++S + P L + A L + H V +NG
Sbjct: 305 --SNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNG 362
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-----DAYARLAE 186
+ A++D Y K R + ++F+ MP + TWN++I D LA
Sbjct: 363 LEGWDNISNAIIDMYMKCGK----REAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAW 418
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F++M D+ SW TMI + Q F EA++ F + + G D+VTM + SAC +LG
Sbjct: 419 RIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLG 478
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
ALDL + + Y C ++ VF ++ ++++ W +
Sbjct: 479 ALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIG 538
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
+A+ G A+ +F+ M + V+P+
Sbjct: 539 VMAMEGNTEGAIELFNEMLEQKVKPD 564
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 131/333 (39%), Gaps = 89/333 (26%)
Query: 34 LKKCSSIKELECVYATIVKTN-------ANLDCFLAKQFISFCTSRFHFIDYTILVFPQM 86
L C ++KEL+ ++ ++K +NL+ +A S +DY F
Sbjct: 32 LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIAS---SVQIGTLESLDYARNAFGDD 88
Query: 87 QE--PNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT--------- 122
++F+Y+ ++S QAI Y+ ML + LL+
Sbjct: 89 DGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSE 148
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
VHG V K G +FV +++ Y+ K + R+LFD M ER
Sbjct: 149 GVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKV----DLGRKLFDGMLER---------- 194
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
++ SWT++I YS +EA+ F + ++G + VTM V+
Sbjct: 195 ----------------NVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVI 238
Query: 240 SACAHLGALDLGRGIQIYCRSLGRSL----------------------LVFFKLREKNLL 277
SACA L L+LG+ + Y LG L +F + KNL+
Sbjct: 239 SACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLV 298
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N+I H +A + L + D M + RP+
Sbjct: 299 MYNTIMSNYVHHEWASDVLVILDEMLQKGPRPD 331
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D ++R + +F +M D+ +WT I + A++ FN+ +
Sbjct: 504 ALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKP 563
Query: 231 DQVTMATVLSACAHLGALDLGR 252
D V +L+AC+H G++D GR
Sbjct: 564 DDVVFVALLTACSHGGSVDQGR 585
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 116/249 (46%), Gaps = 45/249 (18%)
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
H SL L+++A + A L VH K G + + V A++ ++
Sbjct: 207 HTLPSL---LKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHA------- 256
Query: 155 SRRVSRRLFDEMPERKFA------TWNTMIDAYARL-----AELLFNKMPAWDIRSWTTM 203
+ RL D + + A T+NT+I AYAR A LF++MPA + SW+ M
Sbjct: 257 --GILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAM 314
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--- 260
+ Y Q REAL F + + G D + VL+ACA LG L+ G+ + Y ++
Sbjct: 315 VNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNI 374
Query: 261 -----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
LG +L+ VF ++EKN+L W ++ + LA+HG EAL +F +
Sbjct: 375 RITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQ 434
Query: 302 MTYENVRPN 310
M V+P+
Sbjct: 435 MERLGVKPD 443
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ E+ +F M ++ +WTTMI + + + EAL+ F++ ++ G
Sbjct: 383 ALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKP 442
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D + L AC H G +D G R L S++ + ++ K + + + + LA +G
Sbjct: 443 DDIAFIGALCACTHTGLVDKG-------RELFDSMVRKYGIKPK-IEHYGCMVDLLARNG 494
Query: 291 FAHEALGMFDRM 302
+EA M ++M
Sbjct: 495 LLNEAREMVEKM 506
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPE 168
VF TAMV Y E+RRV R LF+EMP
Sbjct: 250 VFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF 309
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
+WN MI Y + +L LF+ MP D SW +I Y+QN + EA++ +
Sbjct: 310 PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGR----------------------GIQIYCRSL 261
K+ G ++ T LSACA + AL+LG+ G+ C +
Sbjct: 370 KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCI 429
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF ++ K+++ WN++ A HGF +AL +F+ M V+P+
Sbjct: 430 DEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPD 478
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 31/191 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPA 194
AM+ Y + KF ++R LFD+MP + +WN M+ YA R A +LF+ MP
Sbjct: 68 NAMISGYLRNAKF----SLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPE 123
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR-- 252
D+ SW M++ Y ++ EA D F++ + ++ +L+A G L+ R
Sbjct: 124 KDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNS----ISWNGLLAAYVRSGRLEEARRL 179
Query: 253 ----------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
G + LG + +F ++ ++L+ WN++ A G +A
Sbjct: 180 FESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQAR 239
Query: 297 GMFDRMTYENV 307
+F+ +V
Sbjct: 240 RLFEESPVRDV 250
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+LFD++P R +WNTMI YA+ +L LF + P D+ +WT M+ +Y Q+
Sbjct: 207 ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGML 266
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG----------------IQIY 257
EA F++ + +++ +++ A +D+GR I Y
Sbjct: 267 DEARRVFDEMPQ----KREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGY 322
Query: 258 CRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C++ L ++ +F + +++ + W +I A +G EA+ M M +
Sbjct: 323 CQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 162 LFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
+FD MP R ++N MI Y R LA LF+KMP D+ SW M+T Y++N++ R+A
Sbjct: 55 VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA 114
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276
F+ + D V+ +LS G +D R VF ++ KN
Sbjct: 115 RMLFDSMPE----KDVVSWNAMLSGYVRSGHVDEARD-------------VFDRMPHKNS 157
Query: 277 LCWNSITEALAIHGFAHEALGMFD 300
+ WN + A G EA +F+
Sbjct: 158 ISWNGLLAAYVRSGRLEEARRLFE 181
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 30/133 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L VHGQV + G+ V A+V Y E+ V
Sbjct: 396 LGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDV-------------------- 435
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
F + DI SW TM+ Y+++ R+AL F +G D++TM V
Sbjct: 436 ----------FQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGV 485
Query: 239 LSACAHLGALDLG 251
LSAC+H G D G
Sbjct: 486 LSACSHTGLTDRG 498
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
M + + LA +F+ MP + S+ MI+ Y +N +F A D F+K D +
Sbjct: 44 MRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPH----KDLFSWN 99
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+L+ A R L + ++F + EK+++ WN++ G EA
Sbjct: 100 LMLTGYAR-------------NRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEAR 146
Query: 297 GMFDRMTYEN 306
+FDRM ++N
Sbjct: 147 DVFDRMPHKN 156
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 156/354 (44%), Gaps = 68/354 (19%)
Query: 21 SVSFIRIHIIANQLKKCSSIKELECVYATIVKT---NANLDCFLAKQFISFCT-SRFHFI 76
S+S + ++ +++C +++EL+ + I+K+ + +L + + C+ S +
Sbjct: 12 SLSLTLRNTLSRLIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSF 71
Query: 77 DYTILVFPQMQEPNVFVYH----AFSSLR-----HPLQAIAFYLYMLRAEVL---LT--- 121
Y VF ++ P++ Y+ A+ S+ H +A+ Y M +++ LT
Sbjct: 72 SYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPF 131
Query: 122 ---------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
+H QV K GF V+V +++ Y +R+V FDEM
Sbjct: 132 LLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKV----FDEM 187
Query: 167 PERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
TWN+M+ R +A LF KM +I +W ++IT +Q +E+L+ F+
Sbjct: 188 LVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFH 247
Query: 222 KTK---KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------- 257
+ + D++T+A+VLSACA LGA+D G+ + Y
Sbjct: 248 EMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYG 307
Query: 258 -CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + ++ +F ++ EK+ W + A+HG +A F M V+PN
Sbjct: 308 KCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPN 361
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 36/133 (27%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSN---KFFESRRVSRRLFDEMPERKFATWNTMID 179
VHG + +NG V + TA+V+ Y K FE +F+EMPE+
Sbjct: 283 VHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFE-------IFEEMPEK---------- 325
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
D +WT MI+ ++ + +A + F + +K+G + VT +L
Sbjct: 326 ----------------DASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLL 369
Query: 240 SACAHLGALDLGR 252
SACAH G ++ GR
Sbjct: 370 SACAHSGLVEQGR 382
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 123/282 (43%), Gaps = 72/282 (25%)
Query: 57 LDCFLAKQFISFCTSRFHFID-----YTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYL 111
LD L ++ CT F FI+ + +L FP ++ P+ F Y + L + +
Sbjct: 68 LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLK-PDAFTYPSVLKACSGLGRVGYG- 125
Query: 112 YMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
VH V K+GF+ V V ++ V Y+ N F ++ + LFDEMPER
Sbjct: 126 ---------KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIK----LFDEMPERDV 172
Query: 172 ATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
A+WN +I+ Y Q+ Q +AL+ F + K SG D
Sbjct: 173 ASWN--------------------------NVISCYYQDGQPEKALELFEEMKVSGFKPD 206
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLV 267
VT+ TV+S+CA L LDL RG +I+ C L + V
Sbjct: 207 SVTLTTVISSCARL--LDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEV 264
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
F +++ KN++ WNS+ ++ G + + +F RM E +RP
Sbjct: 265 FEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 136/351 (38%), Gaps = 91/351 (25%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELE---CVYATIVKTNANLDCFLAKQFI 66
++ FK P SV+ + + C+ + +LE ++ +V++ LD F++ +
Sbjct: 200 VSGFK----PDSVTLTTV------ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALV 249
Query: 67 SFCTSRFHFIDYTILVFPQMQEPNVFVYHAF----------------------SSLRHPL 104
+ ++ VF Q+Q NV +++ +R L
Sbjct: 250 DM-YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 308
Query: 105 QAIAFYLYMLRAEVLLTT---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRR 161
++ L V L +HG + +N + +FV ++++D Y + V
Sbjct: 309 TTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENV--- 365
Query: 162 LFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
F MP+ +WN MI Y ++ L EAL F
Sbjct: 366 -FQNMPKTNVVSWNVMISGYVKVGSYL--------------------------EALVIFT 398
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CR 259
+K+G D +T +VL AC+ L L+ G+ I + C
Sbjct: 399 DMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCG 458
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +L +F +L E++ + W S+ A HG A EAL +F++M + +P+
Sbjct: 459 AVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPD 509
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++D YA+ + +FN++P D SWT+MI +Y + Q EAL F K ++S
Sbjct: 448 GALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAK 507
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT +LSAC+H G +D G
Sbjct: 508 PDKVTFLAILSACSHAGLVDEG 529
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 123/282 (43%), Gaps = 72/282 (25%)
Query: 57 LDCFLAKQFISFCTSRFHFID-----YTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYL 111
LD L ++ CT F FI+ + +L FP ++ P+ F Y + L + +
Sbjct: 260 LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLK-PDAFTYPSVLKACSGLGRVGYG- 317
Query: 112 YMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
VH V K+GF+ V V ++ V Y+ N F ++ + LFDEMPER
Sbjct: 318 ---------KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIK----LFDEMPERDV 364
Query: 172 ATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
A+WN +I+ Y Q+ Q +AL+ F + K SG D
Sbjct: 365 ASWN--------------------------NVISCYYQDGQPEKALELFEEMKVSGFKPD 398
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLV 267
VT+ TV+S+CA L LDL RG +I+ C L + V
Sbjct: 399 SVTLTTVISSCARL--LDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEV 456
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
F +++ KN++ WNS+ ++ G + + +F RM E +RP
Sbjct: 457 FEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 498
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + +N + +FV ++++D Y + V F MP+ +WN MI Y
Sbjct: 522 IHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENV----FQNMPKTNVVSWNVMISGYV 577
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ L EAL F +K+G D +T +VL AC
Sbjct: 578 KVGSYL--------------------------EALVIFTDMRKAGVKPDAITFTSVLPAC 611
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
+ L L+ G+ I + C ++ +L +F +L E++ + W
Sbjct: 612 SQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWT 671
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ A HG A EAL +F++M + +P+
Sbjct: 672 SMIAAYGSHGQAFEALKLFEKMQQSDAKPD 701
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++D YA+ + +FN++P D SWT+MI +Y + Q EAL F K ++S
Sbjct: 640 GALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAK 699
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT +LSAC+H G +D G
Sbjct: 700 PDKVTFLAILSACSHAGLVDEG 721
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 118 VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+L VH +V ++G V+ A+VD Y+ + LF+ M R A+W ++
Sbjct: 178 LLGMQVHKRVLESGVLPDQRVENALVDMYAECGDM----DAAWVLFEGMQMRSMASWTSV 233
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I R ++ LF+ MP D +WT MI Y Q +FR+AL+ F + +D+
Sbjct: 234 ISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADE 293
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
TM +V++ACA LGAL+ G +IY C S+ R+L VF
Sbjct: 294 FTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKD 353
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ ++ W +I LA++G EA+ MF RM
Sbjct: 354 MHNRDKFTWTAIILGLAVNGRGEEAIDMFYRM 385
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ + +F M D +WT +I + N + EA+D F + ++
Sbjct: 332 NALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQT 391
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+VT VL+AC H G +D GR
Sbjct: 392 PDEVTFVGVLTACTHAGLVDKGR 414
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 95/219 (43%), Gaps = 51/219 (23%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LR L VHG + K GF +FVQ MV Y + E +R+LFDEMP+ T
Sbjct: 122 LRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGME---FARKLFDEMPKLDPVT 178
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
W MI YARL Q A+ F K + +G D V
Sbjct: 179 WTAMIGGYARLG--------------------------QSAGAVGLFRKMQIAGVCPDDV 212
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM +VLSAC LGAL+LG+ I+ Y C + ++L +F +
Sbjct: 213 TMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNM 272
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ ++ W S+ LA+HG EA+ +F+ M + P
Sbjct: 273 SKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPE 311
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 120/290 (41%), Gaps = 39/290 (13%)
Query: 34 LKKCSSIKEL---ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ +++L + V+ ++VK + D F+ + +++ +F +M + +
Sbjct: 116 LKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLD 175
Query: 91 VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
+ A ++ L A+ + M A V V + V V +A D
Sbjct: 176 PVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDV----------TMVSVLSACTDLG 225
Query: 147 SYS-NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
+ K+ ES R+ + N ++D +A+ ++ LF M I SW
Sbjct: 226 ALELGKWIESYIEKERVL-----KTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSW 280
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS 260
T++I + + + EA+ F + K SG + + +LSAC+H G ++ GR Y
Sbjct: 281 TSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQ---YFSE 337
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ R + K+ + + + L+ G EAL +RM E PN
Sbjct: 338 MTRQFGIVPKIEH-----YGCMVDLLSRAGLVTEALEFVERMPIE---PN 379
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 34/211 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----R 183
K G + VFV A++ Y ES++V F +R +WNT+I AY
Sbjct: 143 KVGLENNVFVVNALIGMYGKWGLVGESQKV----FQWAVDRDLYSWNTLIAAYVGSGNMS 198
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LA+ LF+ M D+ SW+T+I Y Q F EALD F+K + G ++ T+ + L+AC+
Sbjct: 199 LAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACS 258
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFF--KLREKNLLCW 279
+L ALD G+ I Y C + + VFF K+++K L W
Sbjct: 259 NLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWL-W 317
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N++ A+HG +EA+ +F++M E + PN
Sbjct: 318 NAMIGGFAMHGMPNEAINVFEQMKVEKISPN 348
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 30/183 (16%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R++FDEMP R +WN M+ Y+ +++ LF+ MP D+ SWT MI+ Y+Q +
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 213 FREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----------SL 261
+++ L+ F + +S ++VTM +VLSACA+L AL+ GR + + +L
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 363
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G +L+ +F L KN+ WN++ LA++G A +++ F++M
Sbjct: 364 GAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGE 423
Query: 308 RPN 310
+PN
Sbjct: 424 KPN 426
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ +A +FN + ++ +W +IT + N ++++DAF + K++G
Sbjct: 366 ALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKP 425
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ +T VL+AC+H G +D GR
Sbjct: 426 NDITFVGVLTACSHGGLVDEGR 447
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/419 (22%), Positives = 167/419 (39%), Gaps = 115/419 (27%)
Query: 6 VRAIITSFKKNSFPTSVSFIRIHI---IANQLKKCSSIKELECVYATIVKTNANLDCFLA 62
V I TS S S F R+H I LK C + LE V+A I+ D FL
Sbjct: 6 VIPIPTSTSMRSISHSSPF-RLHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLV 64
Query: 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF-------SSLRHPLQAIA------- 108
FIS + + Y VF ++ P+ +++ + H L A A
Sbjct: 65 FLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGA 124
Query: 109 -----FYLYMLRA------EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
Y +++A ++HG ++ G ++V T+++D Y + ++R+
Sbjct: 125 LPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARK 184
Query: 158 V---------------------------SRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
V +R+LFDEMP R A+WN+M+ + ++ +L
Sbjct: 185 VFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGA 244
Query: 188 --LFNKMPAW-------------------------------DIRSWTTMITSYSQNKQFR 214
+F+ MP D+ +W+ +I+ Y QN
Sbjct: 245 RGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPN 304
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
+AL F + + D+ + +++SA A LG L+L + + Y
Sbjct: 305 QALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAAL 364
Query: 258 ------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ R+L +F + ++++ + S+ + L+IHG EA+ +F+RM E + P+
Sbjct: 365 LDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPD 423
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF++ P D+ + +MI S + + EA++ FN+ G D+V +L+AC+ G
Sbjct: 380 LFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGL 439
Query: 248 LDLGRGI-----QIYCRS 260
+D GR Q YC S
Sbjct: 440 VDEGRNYFQSMKQKYCIS 457
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
A+VD S +++ LFDEMP+R ++ +MID YA+ ++ LF +
Sbjct: 211 NALVDGLVKSGDLVNAKK----LFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARG 266
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+R+W+ +I Y+QN Q EA F++ D+ M ++SAC+ +G +L +
Sbjct: 267 VDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKV 326
Query: 255 QIY-----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
Y C + R+ +F ++ +++L+ + S+ E +AIHG
Sbjct: 327 DSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGC 386
Query: 292 AHEALGMFDRMTYENVRPN 310
EA+ +F++M E + P+
Sbjct: 387 GSEAIRLFEKMVDEGIVPD 405
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 25/210 (11%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q K G S +V ++ YS ++ +LFDEMP + T +TMI AY
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKC--VVGDLNLACKLFDEMPHKDTVTLDTMITAYFE 58
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A +F MP DI +W ++I ++ N + EAL + + G D TM ++LSACA
Sbjct: 59 SAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACA 118
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR-EKNLLCWN 280
L L LGR +Y C ++ + +F ++ E+N++ W
Sbjct: 119 ELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWT 178
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ LA++GF EAL F M E + P+
Sbjct: 179 SLIVGLAVNGFGKEALEHFKDMEREGLVPS 208
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 59/304 (19%)
Query: 47 YATIVKTNANLDCFL-----AKQFISFCTSRFHFIDYTILVFPQMQEPNVF----VYHAF 97
Y+ V + NL C L K ++ T + + VF M E ++ V + F
Sbjct: 23 YSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESAYKVFELMPEKDIVAWNSVINGF 82
Query: 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
+ P +A+ Y M G F +++ + RR
Sbjct: 83 ALNGKPNEALTLYKRM--------------GSEGVEPDGFTMVSLLSACAELATLVLGRR 128
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP-AWDIRSWTTMITSYSQNK 211
+ + N ++D YA+ + +F++M ++ SWT++I + N
Sbjct: 129 AHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNG 188
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS----------- 260
+EAL+ F ++ G ++T VL AC+H G ++ G + + R
Sbjct: 189 FGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVN--EGFEYFKRMKEQYDIVPRIE 246
Query: 261 --------LGRSLLVFFKLR-------EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
LGR+ L+ + N + W ++ A IHG H LG F R
Sbjct: 247 HYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHG--HLGLGAFARARLL 304
Query: 306 NVRP 309
+ P
Sbjct: 305 QLEP 308
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF + EK+++ WNS+ A++G +EAL ++ RM E V P+G
Sbjct: 63 VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDG 107
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 38/228 (16%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+RA L +HG V +G V + AMV+ YS + + E+R LFD++ R T
Sbjct: 189 IRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARH----LFDQISIRDNVT 244
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W +MI Y ++ +L +F+ MP D +WT +I+ + QN + AL+ F + G
Sbjct: 245 WTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGV 304
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYC----RSLGR--------------------- 263
+ +VL ACA LG + RG +++C RS+G
Sbjct: 305 SPTTFALVSVLGACAKLGLVT--RGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDM 362
Query: 264 --SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ VF ++ E++ + WNS+ + +G ++L +F+ M VRP
Sbjct: 363 TAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRP 410
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y++ ++ +F++MP D SW +M+T +S N +++L F + +G
Sbjct: 350 NALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVR 409
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
VT VL+AC+H G + GR I
Sbjct: 410 PTHVTFLAVLTACSHSGLVSNGRLI 434
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH ++ K +S + +V YS S + FD++P + ++NT++ A
Sbjct: 57 AVHARLVKTALTSHTLLSNRLVALYSR----LPSSAAAVAAFDDLPHKNAHSYNTLLAAL 112
Query: 182 ARLAEL------LFNKMPAWDIR---SWTTMITSYSQNKQFREALDAFNKTKKS-----G 227
R + LF+ MPA D R S+ T+++S + + EAL + + G
Sbjct: 113 LRRPDTFPDALHLFDTMPA-DARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPG 171
Query: 228 TGSDQVTMATVLSACAHLGA 247
D+ T+ +V +ACA + A
Sbjct: 172 LAMDRFTVVSVATACAGIRA 191
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 58/254 (22%)
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
TI ++ QM E + Y +L + L+A A L++ L + HGQ K GF +FV
Sbjct: 14 TIQIYSQMLENGL--YPDNYTLPYVLKACAG----LQSCHLGESAHGQSVKLGFWFDIFV 67
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIR 198
++ YS F + R +R +FDEMP W+T +
Sbjct: 68 GNTLIAMYSS----FGNVRAARCIFDEMP------WHTAV-------------------- 97
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
SWT MI+ Y++N F+E L F + +G D+ + ++L ACAHLGA+++G + Y
Sbjct: 98 SWTVMISGYAKNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYL 157
Query: 259 RSLGRSLLV----------------------FFKLREKNLLCWNSITEALAIHGFAHEAL 296
LG L V F + +++ +CWN++ +A++G AL
Sbjct: 158 DQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNAL 217
Query: 297 GMFDRMTYENVRPN 310
+F M V+P+
Sbjct: 218 RLFSEMEKAGVKPD 231
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ L LF+ M D W MI+ + N AL F++ +K+G D
Sbjct: 172 LIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPD 231
Query: 232 QVTMATVLSACA 243
+T + +A A
Sbjct: 232 DITFIAIFTASA 243
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 30/216 (13%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T H G VFVQTA+VD Y+ N +S ++ F+EMP + N +I
Sbjct: 98 TQTHCHALVRGMLGDVFVQTALVDFYA-KNGNMDSAVMA---FEEMPIKDPIPMNCLIIG 153
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+R ++ LF+ MP SW +MI Y+ +F+EAL F++ + G + +T+
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213
Query: 236 ATVLSACAHLGALDLGRGIQ---------------------IYCRSLGRSLLVFFKLREK 274
TV S CA G L+ GR + + CR++ + F ++ +
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRR 273
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ W+++ + +G HE+L +F+RM N +PN
Sbjct: 274 DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPN 309
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 22/144 (15%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F++MP D+ +W+TMI YS N + E+L+ F + K + ++VT+ VLSACA LG+
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+LG I Y C + R+ VF ++ +K ++ WNS+ L
Sbjct: 327 ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGL 386
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A++GFA +A+ ++ M + V+PN
Sbjct: 387 ALNGFAEDAIALYGEMVGDGVQPN 410
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +F++M + +W +MI + N +A+ + + G
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQ 408
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+++T +L+AC H G +D G
Sbjct: 409 PNEITFLALLTACTHAGLVDKG 430
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 98/215 (45%), Gaps = 58/215 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q+ K+GF V+V ++ Y ++R++FDEMPER +WN+MIDA
Sbjct: 230 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALV 285
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R E + AL F + ++S D TM +VLSAC
Sbjct: 286 RFGE--------------------------YDSALQLFREMQRSFE-PDGYTMQSVLSAC 318
Query: 243 AHLGALDLGRG-----------------------IQIYCR--SLGRSLLVFFKLREKNLL 277
A LG+L LG I++YC+ SL + VF +++++L
Sbjct: 319 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 378
Query: 278 CWNSITEALAIHGFAHEALGMFDRMT--YENVRPN 310
WN++ A HG A EA+ FDRM ENVRPN
Sbjct: 379 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPN 413
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSG 227
N++I+ Y R+AE +F M D+ SW MI ++ + + EA++ F++ K+
Sbjct: 350 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 409
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ VT +L AC H G ++ GR Q + ++V E L + I + +A
Sbjct: 410 VRPNSVTFVGLLIACNHRGFVNKGR--QYF------DMMVRDYCIEPALEHYGCIVDLIA 461
Query: 288 IHGFAHEALGM 298
G+ EA+ M
Sbjct: 462 RAGYITEAIDM 472
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYA------RLAELLFNKM-----PAWDIRSWTTMITSYSQ 209
R+FD + WNT+I A A A +L+ KM + D ++ ++ + +
Sbjct: 161 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 220
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
F E + K G G D ++ G LDL R VF
Sbjct: 221 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK-------------VFD 267
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ E++L+ WNS+ +AL G AL +F M + P+G
Sbjct: 268 EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDG 308
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 36/217 (16%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HGQV GF S + + ++++D Y+ ++ ++RR LFDEM R W TM+ YA+
Sbjct: 206 HGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARR----LFDEMIIRDVLAWTTMVSGYAQ 261
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ LF+ MP + +WT++I Y+++ +AL+ F K DQ T ++
Sbjct: 262 WGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSC 321
Query: 239 LSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLREK 274
L A A + +L+ G+ I Y C +GR LVF + +K
Sbjct: 322 LCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGR--LVFDLMGDK 379
Query: 275 -NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ WN+I +LA HG EA+ MFD M ++P+
Sbjct: 380 WDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPD 416
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 66/275 (24%)
Query: 98 SSLRHPLQAIAFYLYML---RAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFF 153
+ +R P + +A+ L ++ L VH + G P F+ +++ YS +
Sbjct: 44 NGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYP 103
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
+ +V FDEM R +WN M+ YA+L ++ LF+KMP D+ SW TM+ +Y+
Sbjct: 104 SAYKV----FDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYA 159
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------------- 253
++ +AL + + ++ G G ++ + A +L+ C + L+L +
Sbjct: 160 KSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLV 219
Query: 254 -----IQIY--CRSLG-----------RSLL--------------------VFFKLREKN 275
+ Y C +G R +L +F + EKN
Sbjct: 220 ISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKN 279
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W S+ A H H+AL +F +M N+RP+
Sbjct: 280 PVAWTSLIAGYARHDLGHKALELFTKMMALNIRPD 314
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 175 NTMIDAYAR-----LAELLFNKM-PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+++ID Y++ + L+F+ M WD+ W T+I+S +Q+ + +EA+ F+ + G
Sbjct: 354 SSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGM 413
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY 257
D++T+ +L+AC+H G + G+++Y
Sbjct: 414 KPDRITLIVLLNACSHSGLVQ--EGLRLY 440
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 30/183 (16%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R++FDEMP R +WN M+ Y+ +++ LF+ MP D+ SWT MI+ Y+Q +
Sbjct: 244 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 303
Query: 213 FREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----------SL 261
+++ L+ F + +S ++VTM +VLSACA+L AL+ GR + + +L
Sbjct: 304 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 363
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G +L+ +F L KN+ WN++ LA++G A +++ F++M
Sbjct: 364 GAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGE 423
Query: 308 RPN 310
+PN
Sbjct: 424 KPN 426
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ +A +FN + ++ +W +IT + N R+++DAF + K++G
Sbjct: 366 ALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKP 425
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ +T VL+AC+H G +D GR
Sbjct: 426 NDITFVGVLTACSHGGLVDEGR 447
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 68/341 (19%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
++F KN F + ++H ++ L KC+S+ EL+ + A +KTN D + + I+FCT
Sbjct: 18 SAFSKNEFVIN----QLHPLS-LLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCT 72
Query: 71 --SRFHFIDYTILVFPQMQEPNVFVYH--AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
++D+ +F Q+ + ++ +++ A R +AF L+ G+
Sbjct: 73 LNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLF------------GE 120
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT----------WNT 176
+ +G + D+Y++S+ ++ S+ L + M FA T
Sbjct: 121 LLCSGL---------LPDDYTFSS-LLKACASSKALREGMGLHCFAVKLGLNHNIYICPT 170
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I+ YA ++ +F++M I S+ +IT Y+++ Q EAL F + + S
Sbjct: 171 LINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPT 230
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
VTM +V+ +CA LGALDLG+ I Y C SL ++ +F
Sbjct: 231 DVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFE 290
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+R ++ W+++ A A HG +A+ MF+ M E VRP+
Sbjct: 291 GMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPD 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 59/248 (23%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+S K L ++ VK N + ++ I+ + + ++ VF +M++P
Sbjct: 137 LKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINM-YAECNDMNAARGVFDEMEQPC 195
Query: 91 VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTV---------------------HG 125
+ Y+A ++ P +A++ + + + + T V H
Sbjct: 196 IVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHE 255
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
V K GF V V TA++D FA ++ DA +
Sbjct: 256 YVKKKGFDKYVKVNTALID-------------------------MFAKCGSLTDAIS--- 287
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+F M D ++W+ MI +++ + +A+ F + K+ G D++T +L AC+H
Sbjct: 288 --IFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHA 345
Query: 246 GALDLGRG 253
G ++ GRG
Sbjct: 346 GLVEQGRG 353
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 29/181 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD+MP R +WNT+++ YA + ++ +F++M ++ SW +I Y+QN +
Sbjct: 106 ARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRV 165
Query: 214 REALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGR--------- 263
E L +F + G+ + T+ VLSACA LGA D G+ + Y +LG
Sbjct: 166 SEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKN 225
Query: 264 --------------SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ VF ++ ++L+ WN++ LA HG EAL +F M + P
Sbjct: 226 ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISP 285
Query: 310 N 310
+
Sbjct: 286 D 286
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + +A +F + D+ SW TMI + + EALD F++ K G
Sbjct: 225 NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGIS 284
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT VL AC H+G ++ G
Sbjct: 285 PDKVTFVGVLCACKHMGLVEDG 306
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
F T +M+ A +F +M ++ WT+MI Y NK A F+ + +
Sbjct: 35 FGTLCSMVSANK-----VFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPE----R 85
Query: 231 DQVTMATVLSACAHLGALDLGRGI--QIYCRSL--------GRSLL--------VFFKLR 272
D V T+++ +G + R + Q+ CR + G + + VF ++
Sbjct: 86 DIVLWNTMVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEML 145
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
E+N+ WN + + A +G E LG F RM E V PN
Sbjct: 146 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPN 184
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 98/215 (45%), Gaps = 58/215 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q+ K+GF V+V ++ Y ++R++FDEMPER +WN+MIDA
Sbjct: 173 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALV 228
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R E + AL F + ++S D TM +VLSAC
Sbjct: 229 RFGE--------------------------YDSALQLFREMQRSFE-PDGYTMQSVLSAC 261
Query: 243 AHLGALDLGRG-----------------------IQIYCR--SLGRSLLVFFKLREKNLL 277
A LG+L LG I++YC+ SL + VF +++++L
Sbjct: 262 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 321
Query: 278 CWNSITEALAIHGFAHEALGMFDRMT--YENVRPN 310
WN++ A HG A EA+ FDRM ENVRPN
Sbjct: 322 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPN 356
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSG 227
N++I+ Y R+AE +F M D+ SW MI ++ + + EA++ F++ K+
Sbjct: 293 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ VT +L AC H G ++ GR Q + ++V E L + I + +A
Sbjct: 353 VRPNSVTFVGLLIACNHRGFVNKGR--QYF------DMMVRDYCIEPALEHYGCIVDLIA 404
Query: 288 IHGFAHEALGMFDRM 302
G+ EA+ M M
Sbjct: 405 RAGYITEAIDMVMSM 419
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYA------RLAELLFNKM-----PAWDIRSWTTMITSYSQ 209
R+FD + WNT+I A A A +L+ KM + D ++ ++ + +
Sbjct: 104 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 163
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
F E + K G G D ++ G LDL R VF
Sbjct: 164 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK-------------VFD 210
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ E++L+ WNS+ +AL G AL +F M + P+G
Sbjct: 211 EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDG 251
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+HG K G + V V TA++ YS + ++R V FD M + TWNTMID Y
Sbjct: 91 LHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLV----FDHMEGKNSMTWNTMIDGY 146
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
R ++ LF++MP + SWT MI + + EAL F + + SG D V +
Sbjct: 147 MRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAII 206
Query: 237 TVLSACAHLGALDLG--------------------RGIQIYCRSLGRSLL--VFFKLREK 274
VL+AC +LGAL G I ++CR L VF + ++
Sbjct: 207 AVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKR 266
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WNS+ + +G A E+L F RM E +PN
Sbjct: 267 TVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPN 302
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+ ID + R LA+ +F+ M + SW ++I +S N E+L F + ++ G
Sbjct: 241 NSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFK 300
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT L+AC+H+G ++ G
Sbjct: 301 PNAVTFTGALTACSHVGLVEEG 322
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 25/129 (19%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL--GALDLGRGIQI 256
SWT+ IT S+N + EA F+ + +G + +T +LS C G+ G +
Sbjct: 34 SWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLLHG 93
Query: 257 YCRSLG-----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
Y LG ++ LVF + KN + WN++ + G
Sbjct: 94 YACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKID 153
Query: 294 EALGMFDRM 302
+A +FD M
Sbjct: 154 DAYKLFDEM 162
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 58/256 (22%)
Query: 111 LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------ 158
L LRA + VHG + K G +S + V ++D+Y + ++RRV
Sbjct: 118 LSKLRAAHQVCQVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVG 177
Query: 159 ---------------SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIR 198
+R++FD M ER +WNT++ Y R LA LF++MP ++
Sbjct: 178 NAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVN 237
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY- 257
SW MI++ S+ + +++ FN+ + D TMA ++SACA LG L + R Q+Y
Sbjct: 238 SWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVAR--QVYG 295
Query: 258 -----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
C + L+F ++ K+++ +N + ALA HG +
Sbjct: 296 LLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKD 355
Query: 295 ALGMFDRMTYENVRPN 310
AL +F++M ++P+
Sbjct: 356 ALKLFEQMIEGGLQPD 371
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+++D +A+ A LLF +M D+ S+ M+++ + + ++AL F + + G
Sbjct: 310 NSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQ 369
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VT VLSACAH G +D G+
Sbjct: 370 PDAVTFLGVLSACAHAGLVDSGK 392
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 86/275 (31%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV----------------------- 158
VH V K G FV A++D YS + F ++R+V
Sbjct: 26 AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREG 85
Query: 159 ----SRRLFDEMPERKFATWNTMIDAYAR------------------------------- 183
R+LFDEMPE+ +WNT++D Y +
Sbjct: 86 ELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCK 145
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+A ++F+KMP+ ++ +WT M+++ +Q EA F + K++ D + ++
Sbjct: 146 KGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSI 205
Query: 239 LSACAHLGALDLGRGIQIYC--RSLGRSLLVFFKL---------------------REKN 275
L+ACA G+L LG+ I Y R+LGRS V L +K+
Sbjct: 206 LAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKD 265
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WNSI A+HG +AL +F +M + P+
Sbjct: 266 SVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 300
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMPAWDIRSWTTMITSYS 208
+R+ R + R N +ID + + A+ +F+ + D SW ++I ++
Sbjct: 218 GKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFA 277
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ +AL+ F + K+ G D VTM VLSAC H+G +D GR
Sbjct: 278 MHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 321
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
++ FD MP + +W M+D Y + A LF++MP ++ +W+TMI Y++N Q
Sbjct: 279 AKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQP 338
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------------- 253
+AL+ F + K+ D+ + ++SAC+ LG +D
Sbjct: 339 LKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSL 398
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
I +Y C S+ ++L +F K+LLC++++ ALA HG +A+ +FD+M N++P+
Sbjct: 399 IDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPD 457
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 153/356 (42%), Gaps = 77/356 (21%)
Query: 27 IHIIANQLKKCSSIKELECVYA-TIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85
+HII N C ++K L+ ++A +++++ F+ + + SRF DY VF +
Sbjct: 6 LHIIHN----CKTLKSLKSIHARLLIESSVASSEFVINKLLRL-YSRFGATDYAHKVFDE 60
Query: 86 MQEPNVFVY----HAFSSLRHPLQAIAFYLYM---------------LRAEVLLT----- 121
+ +PN +++ H + R +A + ++ M L+A LT
Sbjct: 61 ITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGG 120
Query: 122 -TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR----------------------- 157
V+G V K GF+ + VQ +++D + K +R+
Sbjct: 121 QAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNN 180
Query: 158 ----VSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYS 208
++R+ FD MPER +W +MI Y + A++LF+ MP D+ SW M++ Y
Sbjct: 181 DRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYM 240
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD----------LGRGIQI-- 256
A F K TGS + ++ A A D + GI +
Sbjct: 241 DIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDG 300
Query: 257 YCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
Y ++ + +F ++ KNL+ W+++ A +G +AL +F+R ++++P+
Sbjct: 301 YIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPD 356
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ + +F D+ ++TMI + + + R+A+ F+K +++
Sbjct: 397 SLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKP 456
Query: 231 DQVTMATVLSACAHLGALDLGR 252
D VT VL+AC H G +D GR
Sbjct: 457 DSVTFLGVLTACNHGGLVDEGR 478
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+++D Y + +++ LF MP R TW TMID YA+L A+ LF++MP
Sbjct: 231 NSLIDGYVKHGRMEDAKD----LFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 286
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ F + K+S D+ T+ VLSA A LG L
Sbjct: 287 RDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 346
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ +++LVF ++ K++ WN++ LAIHG
Sbjct: 347 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGL 406
Query: 292 AHEALGMFDRMTYENVRPN 310
A M + +++P+
Sbjct: 407 GESAFDMLLEIERRSIKPD 425
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N+MID Y
Sbjct: 118 IHGFLRKTGIWSDLFLQNCLIGLYLKCGCL----GFARQIFDRMPQRDSVSYNSMIDGYV 173
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q + ++ +K D ++
Sbjct: 174 KCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTS---DGVNIASKLFAEMPEKDLISW 230
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ G ++ + + F+ + ++++ W ++ + A GF H+A
Sbjct: 231 NSLIDGYVKHGRMEDAKDL-------------FYVMPRRDVVTWATMIDGYAKLGFVHKA 277
Query: 296 LGMFDRMTYENV 307
+FD+M + +V
Sbjct: 278 KTLFDQMPHRDV 289
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +G VFV T ++ Y + VSRRLFD MP + +WN M+ Y
Sbjct: 145 VHALIVTSGIVPDVFVSTELIRLYGEYGELL----VSRRLFDAMPVKSTVSWNAMVHQYI 200
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT---GSDQVT 234
R + + LF MP D+ SW T+I Y +F EAL+ F + + + T
Sbjct: 201 RHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPT 260
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
++TVL+ACA G L+ G + Y C S+ ++L VF K
Sbjct: 261 ISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAP 320
Query: 273 EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K +L W ++ LA+HG A +AL MF M +RP+
Sbjct: 321 GKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPD 359
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 176 TMIDAYARLAEL-----LFNKMPA-WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ID YA+ + +F K P D+ SWTT+I + + + +AL F + +G
Sbjct: 298 SLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIR 357
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT+ VL+ACAH G +D G
Sbjct: 358 PDDVTLVGVLNACAHGGLVDEG 379
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 98/215 (45%), Gaps = 58/215 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q+ K+GF V+V ++ Y ++R++FDEMPER +WN+MIDA
Sbjct: 164 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALV 219
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R E + AL F + ++S D TM +VLSAC
Sbjct: 220 RFGE--------------------------YDSALQLFREMQRSFE-PDGYTMQSVLSAC 252
Query: 243 AHLGALDLGRG-----------------------IQIYCR--SLGRSLLVFFKLREKNLL 277
A LG+L LG I++YC+ SL + VF +++++L
Sbjct: 253 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 312
Query: 278 CWNSITEALAIHGFAHEALGMFDRMT--YENVRPN 310
WN++ A HG A EA+ FDRM ENVRPN
Sbjct: 313 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPN 347
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSG 227
N++I+ Y R+AE +F M D+ SW MI ++ + + EA++ F++ K+
Sbjct: 284 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 343
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ VT +L AC H G ++ GR Q + ++V E L + I + +A
Sbjct: 344 VRPNSVTFVGLLIACNHRGFVNKGR--QYF------DMMVRDYCIEPALEHYGCIVDLIA 395
Query: 288 IHGFAHEALGM 298
G+ EA+ M
Sbjct: 396 RAGYITEAIDM 406
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYA------RLAELLFNKM-----PAWDIRSWTTMITSYSQ 209
R+FD + WNT+I A A A +L+ KM + D ++ ++ + +
Sbjct: 95 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 154
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
F E + K G G D ++ G LDL R VF
Sbjct: 155 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK-------------VFD 201
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ E++L+ WNS+ +AL G AL +F M + P+G
Sbjct: 202 EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDG 242
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + G + V + A++D Y K E+ ++ LF+ M ++ +W TM+ YA
Sbjct: 278 LHQSIEEMGLNLTVPLANALMDMY-IKCKNIEAAKI---LFENMTKKTVVSWTTMVIGYA 333
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ L LFN+MP D+ W +I + Q K+ +EAL F++ + S D++T+
Sbjct: 334 KFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVN 393
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
LSAC+ LGALD+G + Y C ++ +++ VF ++ +N
Sbjct: 394 CLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W +I LA+HG H A+ F M + P+
Sbjct: 454 SLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 134/343 (39%), Gaps = 79/343 (23%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SR 72
K ++ S I+ + + + L+ C+S+ +++ ++A ++ T D F + ++FC S
Sbjct: 41 KPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISE 100
Query: 73 FHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL-------- 120
+ +DY + NVF ++ + +P+ A+ Y MLR +
Sbjct: 101 WRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPL 160
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
+ G V + GF S +FV A++ + +R+LFDE
Sbjct: 161 LFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELL----AARKLFDES 216
Query: 167 PERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
R D+ SW ++I Y + EA D + K +
Sbjct: 217 CVR--------------------------DLVSWNSIINGYVRCGLADEAFDLYYKMGEL 250
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRS 264
D+VTM V+SA A L L LGR + I C+++ +
Sbjct: 251 NVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAA 310
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++F + +K ++ W ++ A G A+ +F+ M ++V
Sbjct: 311 KILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 52/287 (18%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-----SRFHFIDYTILVFPQMQEPN 90
KC +I+ + ++ + K K +S+ T ++F ++ + +F +M E +
Sbjct: 303 KCKNIEAAKILFENMTK----------KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352
Query: 91 VFVYHA----FSSLRHPLQAIAFYLYMLRAEVL---LTTVHGQVWKNGFSSPVFVQTAMV 143
V +++A F + +A+A + M + V +T V N S+ Q +
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVV------NCLSA--CSQLGAL 404
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR 198
D + + + + ++ + A ++D YA+ + +F +MP +
Sbjct: 405 DVGIWMHHYVDKHNLTMNV---------ALGTALVDMYAKCGNIKKAIQVFEEMPGRNSL 455
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
+WT +I + + Q A+ F++ G D++T VLSAC H G +D GR Y
Sbjct: 456 TWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRD---YF 512
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
+ + KL+ ++ + + L GF EA + M +E
Sbjct: 513 YQMTSKYGISPKLKH-----YSCLVDLLGRAGFLEEAEELIRSMPFE 554
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + G + V + A++D Y K E+ ++ LF+ M ++ +W TM+ YA
Sbjct: 278 LHQSIEEMGLNLTVPLANALMDMY-IKCKNIEAAKI---LFENMTKKTVVSWTTMVIGYA 333
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ L LFN+MP D+ W +I + Q K+ +EAL F++ + S D++T+
Sbjct: 334 KFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVN 393
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
LSAC+ LGALD+G + Y C ++ +++ VF ++ +N
Sbjct: 394 CLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W +I LA+HG H A+ F M + P+
Sbjct: 454 SLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 79/343 (23%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SR 72
K ++ S I+ + + + L+ C+S+ +++ ++A ++ T D F + ++FC S
Sbjct: 41 KPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISE 100
Query: 73 FHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLL-------- 120
+ +DY + N F ++ + +P+ A+ Y MLR +
Sbjct: 101 WRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPL 160
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
+ G V + GF S +FV A++ + +R+LFDE
Sbjct: 161 LFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELL----AARKLFDES 216
Query: 167 PERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
R D+ SW ++I Y + EA D + K +
Sbjct: 217 CVR--------------------------DLVSWNSIINGYVRCGLADEAFDLYYKMGEL 250
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRS 264
D+VTM V+SA A L L LGR + I C+++ +
Sbjct: 251 NVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAA 310
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++F + +K ++ W ++ A G A+ +F+ M ++V
Sbjct: 311 KILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 52/287 (18%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-----SRFHFIDYTILVFPQMQEPN 90
KC +I+ + ++ + K K +S+ T ++F ++ + +F +M E +
Sbjct: 303 KCKNIEAAKILFENMTK----------KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352
Query: 91 VFVYHA----FSSLRHPLQAIAFYLYMLRAEVL---LTTVHGQVWKNGFSSPVFVQTAMV 143
V +++A F + +A+A + M + V +T V N S+ Q +
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVV------NCLSA--CSQLGAL 404
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR 198
D + + + + ++ + A ++D YA+ + +F +MP +
Sbjct: 405 DVGIWMHHYVDKHNLTMNV---------ALGTALVDMYAKCGNIKKAIQVFEEMPGRNSL 455
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
+WT +I + + Q A+ F++ G D++T VLSAC H G +D GR Y
Sbjct: 456 TWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRD---YF 512
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
+ + KL+ ++ + + L GF EA + M +E
Sbjct: 513 YQMTSKYGISPKLKH-----YSCLVDLLGRAGFLEEAEELIRSMPFE 554
>gi|255560231|ref|XP_002521133.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539702|gb|EEF41284.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 274
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP------------ERK 170
VHG V K + FV + +V Y ++R + R+ E E
Sbjct: 33 VHGYVIKLRLDNDEFVASNLVRMYVMCGVMEDARVLFRKHVFEYDICSKSTSDKRKREGI 92
Query: 171 FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
WN MID Y RL +L LF+ MP + SW MI+ Y+QN F+EA++ F+ +
Sbjct: 93 VVLWNVMIDGYVRLGDLAVSRDLFDNMPYRTVVSWNVMISGYAQNGYFKEAIELFHDMQM 152
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
+ VT+ +VL A + LGAL+LG+ + +Y C S+ +
Sbjct: 153 DDMSPNYVTLVSVLPAISRLGALELGKWVHLYAEKNNIEVNDVLGSALIDMYSKCGSIEK 212
Query: 264 SLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF + K N++ W++I LA+HG A +AL + RM V P+
Sbjct: 213 ATQVFESIHNKMNVVTWSAIIGGLAMHGRAKDALDYYRRMQEAGVTPS 260
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 58/255 (22%)
Query: 78 YTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
+++ ++ QM + +F S+ L+++A + R E L +H + + GF S V+
Sbjct: 125 HSVFIYTQMWKNGIFP--DSSTFPTVLKSVA---QLCRQE-LGKAIHCCIIQMGFESNVY 178
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
V TA+V+ Y + ++R+V FDE+P+R +WN
Sbjct: 179 VSTALVNMYGTCSSVSDARQV----FDEIPDRNIVSWN---------------------- 212
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
+IT Y+ N+ FR+ +D F + + +G +VTM VL ACAHLGAL+ GR I Y
Sbjct: 213 ----ALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDY 268
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C + + +F +R KN+ WN + A++G A
Sbjct: 269 IDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESA 328
Query: 296 LGMFDRMTYENVRPN 310
L F RM E +P+
Sbjct: 329 LQAFSRMIMEKFKPD 343
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ AE +F M ++ +W +I+ Y+ N + AL AF++
Sbjct: 283 ALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKP 342
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D+VT VL AC H G ++ GR Y S+ F LR + + + + + L G
Sbjct: 343 DEVTFLGVLCACCHQGLVNEGR---TYFTSMKEE----FGLRPR-IEHYGCMVDLLGRAG 394
Query: 291 FAHEALGMFDRMTYE 305
F EA + M+ +
Sbjct: 395 FLDEAQQLIQAMSMQ 409
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 30/183 (16%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R++FDEMP R +WN M+ Y+ +++ LF+ MP D+ SWT MI+ Y+Q +
Sbjct: 106 LARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGR 165
Query: 213 FREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----------SL 261
+++ L+ F + +S ++VTM +VLSACA+L AL+ GR + + +L
Sbjct: 166 YQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 225
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G +L+ +F L KN+ WN++ LA++G A +++ F++M
Sbjct: 226 GAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGE 285
Query: 308 RPN 310
+PN
Sbjct: 286 KPN 288
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ +A +FN + ++ +W +IT + N R+++DAF + K++G
Sbjct: 228 ALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKP 287
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ +T VL+AC+H G +D GR
Sbjct: 288 NDITFVGVLTACSHGGLVDEGR 309
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+WNT+I Y + E+ +F++MP + SW+TM+ Y+ + A + F++
Sbjct: 26 SWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP--A 83
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
G + VT ++++ A G L L R + F ++ +NL+ WN++ +
Sbjct: 84 IGRNVVTWNSMVTGFARHGLLPLARKM-------------FDEMPVRNLVSWNAMLRGYS 130
Query: 288 IHGFAHEALGMFDRMTYENV 307
++ A +FD M ++V
Sbjct: 131 VNSDMDGARELFDVMPEKDV 150
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 68/298 (22%)
Query: 76 IDYTILVFPQMQEPNVFV--YHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133
+D + +F +M + V S L QA A + RA L ++H V + GF
Sbjct: 224 VDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFG 283
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL--------- 184
S V ++VD Y+ K E+ +V F+ + +WN +I Y +L
Sbjct: 284 SDQHVGNSLVDLYAKGMKMDEAIKV----FESLSSVSIVSWNILITGYGQLGCYERAMEV 339
Query: 185 -------------------------------AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
A +F+K+P + +W T+++ Y Q +
Sbjct: 340 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELH 399
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------------- 253
+E +D F + + D+ T+A +LS+C+ LG +LG+
Sbjct: 400 QETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGL 459
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
I IY C +G +L++F + E++++CWNS+ LAIH + EA +M + P
Sbjct: 460 IDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFP 517
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H +V G ++ F+ +V+ YS S + R F +P ++N I A
Sbjct: 31 AAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRA----FRALPHPNVYSYNAAISAA 86
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
R +L L +MP + SW T+I + +++ EAL+ + + G T+A
Sbjct: 87 CRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLA 146
Query: 237 TVLSACAHLGALDLGR----------------------GIQIYCRSLGRSLLVFFKLREK 274
+VLSAC + ALD GR G+ C S+ ++ +F +
Sbjct: 147 SVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSP 206
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
N + + ++ LA G +AL +F RM+ +R
Sbjct: 207 NEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIR 240
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 59/244 (24%)
Query: 34 LKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
L CS + E V++ V+ + D F+A I S+ + +++F M E +
Sbjct: 425 LSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDI-YSKCGQVGIALIIFNMMTERD 483
Query: 91 VFVYHAFSS--LRHPLQAIAF-YLYMLRAEVLLTT----------------------VHG 125
V +++ S H L AF +L +R + T +H
Sbjct: 484 VVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHA 543
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
QV K+G+ V+V +++D Y+ S ++R
Sbjct: 544 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDAR----------------------------- 574
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
L FN M ++ +W MI Y+QN +A++ F + D VT VL+ C+H
Sbjct: 575 -LFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHS 633
Query: 246 GALD 249
G +D
Sbjct: 634 GLVD 637
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 27/161 (16%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ +A ++FN M D+ W +MI+ + + EA D + +++G
Sbjct: 459 LIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPT 518
Query: 232 QVTMATVLSACAHLGALDLGRG--------------------IQIYCRS--LGRSLLVFF 269
+ + A++++ CA L ++ GR I +Y +S + + L F
Sbjct: 519 ESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFN 578
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ KNL+ WN + A +GF +A+ +F+ M +P+
Sbjct: 579 CMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPD 619
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF+ MP+ + S+T M+ +Q +AL F + ++G D V +++VL ACA A
Sbjct: 199 LFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACA 258
Query: 248 LD--LGRGIQI 256
D + R IQ+
Sbjct: 259 GDYNVARAIQL 269
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 32/209 (15%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL----- 184
GF FV+ +++ Y +R+V FDEM + W +++ AY+R
Sbjct: 175 GGFDKHRFVENSLIGAYIACGDVGAARKV----FDEMVVKDVICWTSIVVAYSRSRDMGS 230
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
AE +F + P D+ +WT M+T Y+QN +AL+ F++ G G D+V++ +SACA
Sbjct: 231 AEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQ 290
Query: 245 LGALD-------------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSI 282
LGA+ +G G + +Y C + + VF ++EKN+ ++S+
Sbjct: 291 LGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSM 350
Query: 283 TEALAIHGFAHEALGMF-DRMTYENVRPN 310
LA HG A EA+ +F D + +V PN
Sbjct: 351 VVGLASHGRAREAIALFKDMVRRADVAPN 379
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H +K GF S V+VQTA++ Y+ S ++ +V FDEMP+R TWN +I
Sbjct: 137 LHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKV----FDEMPDRSSVTWNVLITGLV 192
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMA 236
+ EL +F++MP + SWT +I Y++ + EA F G ++VT+
Sbjct: 193 KFGELKRARDVFDQMPMRTVVSWTAIIDGYTRLNRHEEAAGLFWRMVAHFGMEPNEVTLL 252
Query: 237 TVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLRE 273
T+ A ++LGAL L + + Y C + + VF ++
Sbjct: 253 TIFPAISNLGALKLCQSVHAYAEKKGFKVSDVRIANSLIDCYAKCGCINSASKVFEEMSA 312
Query: 274 --KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KNL+ W SI +HG EA+ F+ M E PN
Sbjct: 313 EIKNLVSWTSIISGFTMHGMGKEAMESFEIMEKEGHEPN 351
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
Query: 175 NTMIDAYARL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
N++ID YA+ A +F +M A ++ SWT++I+ ++ + +EA+++F +K G
Sbjct: 288 NSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEKEG 347
Query: 228 TGSDQVTMATVLSACAHLGALDLG 251
++VT +++SAC+H G ++ G
Sbjct: 348 HEPNRVTFLSIVSACSHGGLVEEG 371
>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
Length = 652
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 50/260 (19%)
Query: 83 FPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM 142
F QM E N+F + + S Y +V G+V+ + + TAM
Sbjct: 139 FDQMPERNLFSWTSLLSA-----------YGRSGDV---KAAGRVFDSMPEWNLVAWTAM 184
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDI 197
+ YS S ++R FD MPER W M+ AYA R +F +MP D+
Sbjct: 185 LTGYSLSGDVVRAKRA----FDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKK-----SGTGSDQVTMATVLSACAHLGALDLGR 252
SW TM+ + +N E+ + F++ + G ++VT T+L AC+ LGAL GR
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300
Query: 253 GIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I C +LG + +VF +R ++++ W+S+ A A G
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRG 360
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA+ ++ RM E P+
Sbjct: 361 RVDEAMELYHRMLSEGTLPD 380
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R FD+MPER +W +++ AY R ++ +F+ MP W++ +WT M+T YS +
Sbjct: 135 ARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDV 194
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
A AF+ + D + +LSA A G L R I F ++ E
Sbjct: 195 VRAKRAFDSMPE----RDLIAWTAMLSAYAFNGHLRYTREI-------------FQRMPE 237
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM 302
++L+ W ++ AL + E+ +FDRM
Sbjct: 238 RDLISWATMVAALVENDLLEESKELFDRM 266
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 22/154 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R++FD + +R +W M+ YAR +L +F++MP W + SWT ++++++ +
Sbjct: 11 ARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHH 70
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
EA F+ ++ D + +L+ A ++ + F ++ E
Sbjct: 71 EEAKTLFDTMQE----RDLIAWTIMLTVLATFSNIEDAK-------------YHFDQMPE 113
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++L+ W ++ A A G A FD+M N+
Sbjct: 114 RDLVAWTAMLAANAERGQMENARETFDQMPERNL 147
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWD 196
++D S+ E R++ + + + N +++ Y R A+++F+ M D
Sbjct: 286 LLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRD 345
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+ SW++MI++++Q + EA++ +++ GT D + +VL AC++ G ++
Sbjct: 346 VISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVE 398
>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
Length = 596
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 34/226 (15%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LR L +HG V +G V + AMVD YS + + ++R V FD+M R +
Sbjct: 183 LRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV----FDQMTIRDSVS 238
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W +MI Y R + L +F+ MPA D +WT +I+ + QN + AL+ F + G
Sbjct: 239 WTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGV 298
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQ--IYCRSLGR----------------------- 263
+ + L ACA +G + G+ + I RS+G
Sbjct: 299 VPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVA 358
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ VF ++ E++++ WNS+ + +G ++L +F+RM + V+P
Sbjct: 359 AMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQP 404
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +++ F++M DI SW +M+T +S N Q +++L F + K
Sbjct: 344 NALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQ 403
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
VT VL+AC+H G + GR I
Sbjct: 404 PTYVTFLAVLTACSHAGLVSDGRRI 428
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 136 VFVQTAMVDNYSYSNKF------FESRRVSRRLFDEMPERKFATWNTMIDAYARL----- 184
+ V+TA+ + SN+ + S FD++P + ++N+++ A AR
Sbjct: 54 LLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALARGRGTLP 113
Query: 185 -AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMA--TV 238
A L + MP + ++ S+ T+I+S +++ + EAL F + + G G QV + TV
Sbjct: 114 DALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTV 173
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
+SA + L R + R L +++V E ++ N++ +A + G +A G+
Sbjct: 174 VSAASACAGLRDAR----HLRELHGAVVV--SGMEVTVIMANAMVDAYSKAGRVEDARGV 227
Query: 299 FDRMTYEN 306
FD+MT +
Sbjct: 228 FDQMTIRD 235
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 139/332 (41%), Gaps = 60/332 (18%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C++++ +E + +VK F+A + F S D + F +M + N
Sbjct: 121 LKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRD-SRRFFGEMADRN 179
Query: 91 VFVYHA-----------------FSSLRH-PLQAIAFYLYML----RAEVLLTT---VHG 125
V ++ F +RH L A F L L +E L VH
Sbjct: 180 VVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHC 239
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ +G + A++D Y + ++ R FD MP + TW +M+ A A+
Sbjct: 240 HMLVSGSRVDRILGNALLDMYGKCGDLW----MAHRCFDMMPIKNVVTWTSMLCAQAKHG 295
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+ F +MP +I SW MI+ Y Q + E LD +N+ + G D+ T+A VLS
Sbjct: 296 SVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLS 355
Query: 241 ACAHLGALDLGRGIQIYCR--------SLGRSLL--------------VFFKLREKNLLC 278
AC G L G+ I Y R +L SLL +F ++ KN++
Sbjct: 356 ACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVIS 415
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN I ALA+HG A E + F M + P+
Sbjct: 416 WNVIIGALAMHGRAQETVTFFRTMVSDAFSPD 447
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 15/175 (8%)
Query: 83 FPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM 142
F QM E N+ ++A I+ Y+ R L ++ ++ G + F +
Sbjct: 304 FEQMPERNIVSWNAM---------ISCYVQCGRLHETLD-LYNRMRSLGITPDEFTLAGV 353
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDI 197
+ + + + + D + N+++D YAR ++ LF +MP ++
Sbjct: 354 LSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNV 413
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
SW +I + + + + +E + F D++T +LSAC+H G L+ G
Sbjct: 414 ISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGE 468
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC-- 242
A LF+++P D + T++ +YS + +EAL + G ++ T+ VL AC
Sbjct: 67 ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTT 126
Query: 243 ---------AHLGALDLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSI 282
AH + LG QI+ SL S F ++ ++N++ WN++
Sbjct: 127 VRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTM 186
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
A G EA +F M ++ +
Sbjct: 187 IGGYAQAGEVSEACALFGEMRHQGL 211
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 68/298 (22%)
Query: 76 IDYTILVFPQMQEPNVFV--YHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133
+D + +F +M + V S L QA A + RA L ++H V + GF
Sbjct: 123 VDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFG 182
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL--------- 184
S V ++VD Y+ K E+ +V F+ + +WN +I Y +L
Sbjct: 183 SDQHVGNSLVDLYAKGMKMDEAIKV----FESLSSVSIVSWNILITGYGQLGCYERAMEV 238
Query: 185 -------------------------------AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
A +F+K+P + +W T+++ Y Q +
Sbjct: 239 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELH 298
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------------- 253
+E +D F + + D+ T+A +LS+C+ LG +LG+
Sbjct: 299 QETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGL 358
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
I IY C +G +L++F + E++++CWNS+ LAIH + EA +M + P
Sbjct: 359 IDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFP 416
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP + SW T+I + +++ EAL+ + + G T+A+VLSAC + ALD G
Sbjct: 1 MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60
Query: 252 R----------------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R G+ C S+ ++ +F + N + + ++ LA
Sbjct: 61 RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120
Query: 290 GFAHEALGMFDRMTYENVR 308
G +AL +F RM+ +R
Sbjct: 121 GAVDDALRLFARMSRTGIR 139
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 59/244 (24%)
Query: 34 LKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
L CS + E V++ V+ + D F+A I S+ + +++F M E +
Sbjct: 324 LSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDI-YSKCGQVGIALIIFNMMTERD 382
Query: 91 VFVYHAFSS--LRHPLQAIAF-YLYMLRAEVLLTT----------------------VHG 125
V +++ S H L AF +L +R + T +H
Sbjct: 383 VVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHA 442
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
QV K+G+ V+V +++D Y+ S ++R
Sbjct: 443 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDAR----------------------------- 473
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
L FN M ++ +W MI Y+QN +A++ F + D VT VL+ C+H
Sbjct: 474 -LFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHS 532
Query: 246 GALD 249
G +D
Sbjct: 533 GLVD 536
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 27/161 (16%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ +A ++FN M D+ W +MI+ + + EA D + +++G
Sbjct: 358 LIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPT 417
Query: 232 QVTMATVLSACAHLGALDLGRG--------------------IQIYCRS--LGRSLLVFF 269
+ + A++++ CA L ++ GR I +Y +S + + L F
Sbjct: 418 ESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFN 477
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ KNL+ WN + A +GF +A+ +F+ M +P+
Sbjct: 478 CMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPD 518
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF+ MP+ + S+T M+ +Q +AL F + ++G D V +++VL ACA A
Sbjct: 98 LFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACA 157
Query: 248 LD--LGRGIQI 256
D + R IQ+
Sbjct: 158 GDYNVARAIQL 168
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 34/219 (15%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H Q K G + V +++ Y +RRV FD A+WNTM+ Y
Sbjct: 97 VAHAQALKCGALAHSVVTNSLLKLYCTLGLLPHARRV----FDSGAALDVASWNTMVSGY 152
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ +L +F +MP ++ SW+ MI + ++F EAL F++ + G D V +
Sbjct: 153 GKSGDLAAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMMREGFKPDVVVLV 212
Query: 237 TVLSACAHLGALDLGRG-----------------------IQIYCR--SLGRSLLVFFKL 271
++L ACAHLGA+ GR + +YC+ + + VF +
Sbjct: 213 SMLKACAHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCGCMEEAWCVFDGV 272
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R ++++ WNS+ LA++G AL +F RM E PN
Sbjct: 273 RYRDVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPN 311
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM---PERKFATWNTMI 178
+V Q+ + GF V V +M+ ++ R + L E +R ++
Sbjct: 194 SVFDQMMREGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALV 253
Query: 179 DAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
D Y + A +F+ + D+ W +MI + N AL+ F + + G +Q
Sbjct: 254 DMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQS 313
Query: 234 TMATVLSACAHLGALDLGRGI 254
T A L AC H G +D GR I
Sbjct: 314 TFAGALCACTHTGHVDEGREI 334
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V + G S + +Q ++ YS +RRLFD +WN+MI Y +
Sbjct: 289 HGLVIRAGLCSLLNIQNVLIHMYSCCLDVV----AARRLFDSGDCLDQFSWNSMIAGYLK 344
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ LF+ MP D SW+TMI+ QN Q AL F+ + G D+VT+ +V
Sbjct: 345 NGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSV 404
Query: 239 LSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNL 276
+SAC +L AL+ G+ + Y R LG SL+ VF + EK
Sbjct: 405 ISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGA 464
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM 302
CWN++ LA++G ++L +F M
Sbjct: 465 PCWNAVIVGLAMNGLVTKSLEIFSEM 490
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 69/284 (24%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF---IDYTI 80
+ + ++ QL +CSS++ L ++ + + D F A + + F ++ I ++
Sbjct: 1 MLTVSLLDAQLARCSSVRHLLQIHGQFIASGLLADAFAASRLLLFTSATRLLPFPIHHSF 60
Query: 81 LVFPQMQEPNVFVYHA-----------------FSSL-------RHPLQAIAFYLYMLRA 116
+ ++ PN F + ++SL HP+ A A +
Sbjct: 61 RLLRLVRCPNAFSCNTLLKAALLAGMPHLCLPLYTSLPASPDTYTHPILAAACAARRDVS 120
Query: 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
E V ++GF ++++ A++ YS +++RRV FD P +WNT
Sbjct: 121 EG--RQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRV----FDAGPVWDAVSWNT 174
Query: 177 MIDAYARLAEL-----LFNKMP-------------------------------AWDIRSW 200
++ AY ++ +F +MP DI +W
Sbjct: 175 ILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTW 234
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
T MI+ + +N F EAL F+ ++ D+ M +V++ACA
Sbjct: 235 TAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQ 278
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 26/139 (18%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG- 229
++ID Y + L +FN M W +I + N ++L+ F++ + S T
Sbjct: 438 SLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAI 497
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE------KNLLCWNSIT 283
+++T VLSAC H G ++ GR FFKL + N+ + +
Sbjct: 498 PNEITFTGVLSACRHAGLVEEGRH--------------FFKLMQHKYQIVPNIRHYGCMV 543
Query: 284 EALAIHGFAHEALGMFDRM 302
+ L G+ EA + + M
Sbjct: 544 DLLGRAGYVKEAEDLIESM 562
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 121/297 (40%), Gaps = 66/297 (22%)
Query: 43 LECVYATIVKTN------ANLDCFLAKQFISFCTSRFH-FIDYTILVFPQMQEPNVFVYH 95
L C +I+ T AN D FL I TS+FH F Y++ + N +
Sbjct: 53 LACAAGSIIYTRQIFLSVANPDSFLFNTLIK-STSKFHKFSIYSLFFY------NCMLLS 105
Query: 96 AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155
S + +I L + L VHG V NGF V+VQ A+V Y+ S +
Sbjct: 106 DISPSAYTFTSIVKSCADLSSLKLGKVVHGHVLVNGFGLDVYVQAALVACYAKSGDLGNA 165
Query: 156 RRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+V FD+M ER + SW ++I+ Y QN RE
Sbjct: 166 RKV----FDKMRER--------------------------SVVSWNSIISGYEQNGFGRE 195
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------ 257
A+ F K ++ G D T VLSACA LGAL +G + Y
Sbjct: 196 AIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIGHGLDLNVVLGTSLIN 255
Query: 258 ----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ ++ VF ++EKN++ W ++ +G +A+ +FD M PN
Sbjct: 256 MYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAVQLFDEMKRRGPCPN 312
>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
Length = 596
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 34/226 (15%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LR L +HG V +G V + AMVD YS + + ++R LFD+M R +
Sbjct: 183 LRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG----LFDQMTIRDSVS 238
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W +MI Y R + L +F+ MPA D +WT +I+ + QN + AL+ F + G
Sbjct: 239 WTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGV 298
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQ--IYCRSLGR----------------------- 263
+ + L ACA +G + G+ + I RS+G
Sbjct: 299 VPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVA 358
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ VF ++ E++++ WNS+ + +G ++L +F+RM + V+P
Sbjct: 359 AMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQP 404
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +++ F++M DI SW +M+T +S N Q +++L F + K
Sbjct: 344 NALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQ 403
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
VT VL+AC+H G + GR I
Sbjct: 404 PTYVTFLAVLTACSHAGLVSDGRRI 428
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 136 VFVQTAMVDNYSYSNKF------FESRRVSRRLFDEMPERKFATWNTMIDAYARL----- 184
+ V+TA+ + SN+ + S FD++P + ++N+++ A AR
Sbjct: 54 LLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALARGRGTLP 113
Query: 185 -AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMA--TV 238
A L + MP + ++ S+ T+I+S +++ + EAL F + + G G QV + TV
Sbjct: 114 DALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTV 173
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
+SA + L R + R L +++V E ++ N++ +A + G +A G+
Sbjct: 174 VSAASACAGLRDAR----HLRELHGAVVV--SGMEVTVIMANAMVDAYSKAGRVEDARGL 227
Query: 299 FDRMTYEN 306
FD+MT +
Sbjct: 228 FDQMTIRD 235
>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
Length = 596
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 34/226 (15%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LR L +HG V +G V + AMVD YS + + ++R V FD+M R +
Sbjct: 183 LRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV----FDQMTIRDSVS 238
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
W +MI Y R + L +F+ MPA D +WT +I+ + QN + AL+ F + G
Sbjct: 239 WTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGV 298
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQ--IYCRSLGR----------------------- 263
+ + L ACA +G + G+ + I RS+G
Sbjct: 299 VPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVA 358
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ VF ++ E++++ WNS+ + +G ++L +F+RM + V+P
Sbjct: 359 AMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQP 404
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ +++ F++M DI SW +M+T +S N Q +++L F + K
Sbjct: 344 NALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQ 403
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
VT VL+AC+H G + GR I
Sbjct: 404 PTYVTFLAVLTACSHAGLVSDGRRI 428
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 136 VFVQTAMVDNYSYSNKF------FESRRVSRRLFDEMPERKFATWNTMIDAYARL----- 184
+ V+TA+ + SN+ + S FD++P + ++N+++ A AR
Sbjct: 54 LLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALARGRGTLP 113
Query: 185 -AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMA--TV 238
A L + MP + ++ S+ T+I+S +++ + EAL F + + G G QV + TV
Sbjct: 114 DALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTV 173
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
+SA + L R + R L +++V E ++ N++ +A + G +A G+
Sbjct: 174 VSAASACAGLRDAR----HLRELHGAVVV--SGMEVTVIMANAMVDAYSKAGRVEDARGV 227
Query: 299 FDRMTYEN 306
FD+MT +
Sbjct: 228 FDQMTIRD 235
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 143/329 (43%), Gaps = 84/329 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
+K CS L ++A I++T+ + F++ QF+S S + Y+ VF Q+ +P+
Sbjct: 75 IKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGS 134
Query: 93 VYH----AFSSLRHPLQAIAFYLY---------------------MLRAEVLLT--TVHG 125
Y+ A+S P Q FYLY +R L+ +H
Sbjct: 135 QYNVMIRAYSMSHSPEQG--FYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHA 192
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ ++G S + T ++D YS +KF E+ +V FDE+P+
Sbjct: 193 RILRDGHQSDNLLLTTLMDLYSCCDKFEEACKV----FDEIPQ----------------- 231
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SDQVTMATVLSACA 243
WD SW +I+ N++ R+AL F+ + + G D VT +L ACA
Sbjct: 232 ---------WDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACA 282
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+LGAL+ G + Y C L ++ +F ++ E+N++ W++
Sbjct: 283 NLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSA 342
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ A+HG+ EA+ F++M V P+
Sbjct: 343 MISGFAMHGYGREAIEAFEQMQQLGVSPD 371
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I Y+R L +F +M ++ SW+ MI+ ++ + REA++AF + ++ G
Sbjct: 310 NSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVS 369
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D T+ VLSAC+H G +D G
Sbjct: 370 PDDQTLTGVLSACSHCGLVDDG 391
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 46/306 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
LK C S+ L+ ++A I + + D + ++FCT F+ ++Y +F ++ P +
Sbjct: 44 LKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLL 103
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV-HGQVWKNGFSSP-VFVQTAMVDNYSYSN 150
+Y+ ++A A R VL + + +W + F+ P VF + S +
Sbjct: 104 IYNLI------IKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAE 157
Query: 151 KFFESRRVSRRLFDEMPERKFATW--NTMIDAYARLA-----ELLFNKMPAWDIRSWTTM 203
K R +F T+ N++ID YA+LA ++LF++MP D+ SW M
Sbjct: 158 KL--------RGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVM 209
Query: 204 ITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS-- 260
I+ Y + ++F +A++ F + + +SG D+ T+ + LSAC L L+LG+ I Y R
Sbjct: 210 ISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNV 269
Query: 261 -----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
+G +LL VF ++ KN++CW ++ A G EA +F+
Sbjct: 270 KFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEG 329
Query: 302 MTYENV 307
+V
Sbjct: 330 SPIRDV 335
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V N +P+ + A++D Y ++R +F+EMP + W TM+ YA
Sbjct: 261 IHHYVRDNVKFTPI-IGNALLDMYCKCGCL----SIARAVFEEMPSKNVICWTTMVSGYA 315
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
EL LF P D+ WT MI Y Q +F EA+ F + + D+ + +
Sbjct: 316 NCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVS 375
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
+L+ CA GA++ G+ I + C + ++L +F+ LR K+
Sbjct: 376 LLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKD 435
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W SI LA++G +AL +F +M VRP+
Sbjct: 436 TASWTSIICGLAMNGKTSKALELFSKMKQAGVRPD 470
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP 193
QT ++ + ++F + R+ D + +I+ YA+ + +F +
Sbjct: 382 QTGAIEQGKWIHEFIDENRIP---IDAV------VGTALIEMYAKCGFIEKALEIFYGLR 432
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D SWT++I + N + +AL+ F+K K++G D +T VLSAC+H G ++ GR
Sbjct: 433 VKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGR 491
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 139/332 (41%), Gaps = 80/332 (24%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQ 87
+I L+ C+S+K+L +++ ++ + + FC S + + L+F
Sbjct: 7 VIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFD 66
Query: 88 -EPNV----FVYHAFSSLRHPLQAIAFYLYMLRAEV----LLT----------------- 121
+P+ ++ FS+ PL +I FY ML + V L T
Sbjct: 67 SDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKC 126
Query: 122 -TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+HG V ++GF V T++V YS + S ++ ++FDEMP R +WN MI
Sbjct: 127 LEIHGSVIRSGFLDDAIVATSLVRCYSANG----SVEIASKVFDEMPVRDLVSWNVMICC 182
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ + L N +AL + + G D T+ +LS
Sbjct: 183 FSHVG--LHN------------------------QALSMYKRMGNEGVCGDSYTLVALLS 216
Query: 241 ACAHLGALDLG--------------------RGIQIY--CRSLGRSLLVFFKLREKNLLC 278
+CAH+ AL++G I +Y C SL ++ VF +R++++L
Sbjct: 217 SCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLT 276
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ +HG EA+ F +M VRPN
Sbjct: 277 WNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 27/230 (11%)
Query: 34 LKKCSSIKEL-EC--VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C IK + +C ++ +++++ D +A + C S ++ VF +M +
Sbjct: 114 LKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVR-CYSANGSVEIASKVFDEMPVRD 172
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
+ ++ FS + QA++ Y M G + A++ +
Sbjct: 173 LVSWNVMICCFSHVGLHNQALSMYKRM--------------GNEGVCGDSYTLVALLSSC 218
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
++ + + R D E N +ID YA+ L +FN M D+ +W
Sbjct: 219 AHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWN 278
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+MI Y + EA+ F K SG + +T +L C+H G + G
Sbjct: 279 SMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEG 328
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 31/174 (17%)
Query: 168 ERKFAT----WNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
ER+F N M+D Y + A+ +F+++P DI SWT MIT Q+ +++L+
Sbjct: 230 ERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLE 289
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQ-----------IY- 257
F+ + G D + + +VLSACA LG LD G RGI+ +Y
Sbjct: 290 LFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYA 349
Query: 258 -CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + +L +F+ + ++N WN++ LA+HG HEAL +F+ M V+PN
Sbjct: 350 KCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPN 403
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 119/289 (41%), Gaps = 37/289 (12%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88
++ + +K C +++ ++A +V + D F+ + + F + + DY Q
Sbjct: 7 VLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNT 66
Query: 89 -----PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMV 143
P + + + P A++ Y M+R + + F+ PV ++
Sbjct: 67 RLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFV---------PDMFTFPVLLKAC-- 115
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR 198
N+S S E R+V + N++I Y + +F++M D+
Sbjct: 116 SNFSGSR---EGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVV 172
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
SW ++I+ + + F EA+ F + + T+ +VL+ACA G L G+GI
Sbjct: 173 SWNSLISGFMKAGHFDEAISVFFRMDVEPS---MTTLVSVLAACARNGDLCTGKGIH--- 226
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
V + + NL+ N++ + +G +EA +FD + ++
Sbjct: 227 -------GVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDI 268
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ +A +F M + +W ++ + + EAL+ F SG +
Sbjct: 344 IVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPN 403
Query: 232 QVTMATVLSACAHLGALDLGR 252
++T +L+AC H G +D GR
Sbjct: 404 EITFLAILTACCHCGLVDEGR 424
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 27/175 (15%)
Query: 163 FDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F E N ++D Y + LA +F+ + A DI SWT MI+ Q K+ EAL
Sbjct: 243 FRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEAL 302
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQ------------- 255
+ FN + SG D+V ++TVLSACA LGAL+ GR GI+
Sbjct: 303 EVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMY 362
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ C L ++ +F ++ KN+ WN++ A+HG EAL FDRM + PN
Sbjct: 363 VKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPN 417
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 159 SRRLFDEMPERKFATWN-----TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
S R E ERK W+ +++D Y + L +F +MP ++ SW +I ++
Sbjct: 335 SGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFA 394
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + REALD F++ SG ++VT TVL AC H G + GR
Sbjct: 395 LHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGR 438
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 55/209 (26%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H K GF V VQ A+V Y + ++R+V FDEM ER
Sbjct: 141 HAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKV----FDEMAER-------------- 182
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
D+ SWT +++++++ F EAL + + ++VT+A+VL AC
Sbjct: 183 ------------DVVSWTALLSAFTRGGMFMEALGVLAEMDVT---PNEVTLASVLVACG 227
Query: 244 HLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNS 281
+LG G+ + + C L + VF L ++++ W
Sbjct: 228 NLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTV 287
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L EAL +F+ M V+P+
Sbjct: 288 MISGLVQCKRPSEALEVFNAMQISGVKPD 316
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ FS +F+Q ++D Y + ++R+ LFD MP+R TWN++I
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK----LFDRMPQRNTFTWNSLISVLT 92
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A LF MP D SW +M++ ++Q+ +F E+L+ F K + ++ + +
Sbjct: 93 KSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGS 152
Query: 238 VLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLRE 273
LSACA G +DL G Q++ C S+ + VF + E
Sbjct: 153 ALSACA--GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIE 210
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL+ WNS+ +G A EAL +F RM + P+
Sbjct: 211 RNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPD 247
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 146/342 (42%), Gaps = 67/342 (19%)
Query: 31 ANQLKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
+ L C+ + +L V+A + K+ + D ++ I S+ + VF M
Sbjct: 151 GSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM-YSKCGSVACAEEVFSGMI 209
Query: 88 EPNVFVYHAFSSLRH----PLQAIAFYLYMLRA-----EVLLTTV--------------- 123
E N+ +++ + +A+ ++ M+ + EV L +V
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 124 -HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H +V K N F + + A+VD Y+ +K E+RRV FD M R + +M+ Y
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRV----FDRMSIRNVVSETSMVSGY 325
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
AR A + +F+KM ++ SW +I Y+QN + EAL F K+ T
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFG 385
Query: 237 TVLSACAHLGALDLGRG--------------------------IQIY--CRSLGRSLLVF 268
+LSACA+L L LGR I +Y C S+ VF
Sbjct: 386 NLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVF 445
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K++E++ + WN+I A +G+ EAL +F +M +P+
Sbjct: 446 EKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPD 487
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 68/297 (22%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
KC + + ++ + + N F IS T + F+D +F M EP+ ++
Sbjct: 62 KCDCLDDARKLFDRMPQRNT----FTWNSLISVLT-KSGFLDEAARLFGSMPEPDQCSWN 116
Query: 96 AFSS--LRHPL--QAIAFYLYMLRAEVLL---------------------TTVHGQVWKN 130
+ S +H +++ +++ M R + LL T VH V K+
Sbjct: 117 SMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKS 176
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFN 190
+S+ V++ +A++D YS S + +F M ER TWN
Sbjct: 177 RYSTDVYMGSALIDMYSKCG----SVACAEEVFSGMIERNLVTWN--------------- 217
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++IT Y QN EAL+ F + SG D+VT+A+V+SACA L AL
Sbjct: 218 -----------SLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK- 265
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G+QI+ R + + K R+ +L+ N++ + A +EA +FDRM+ NV
Sbjct: 266 -EGLQIHARVVKTN-----KFRD-DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNV 315
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F E N++ID Y + + +F KM D SW +I Y+QN EAL
Sbjct: 414 FQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEAL 473
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
F K G D VTM VL AC+H G ++ GR
Sbjct: 474 QIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGR 508
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 39/225 (17%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+HG V K GF + +FV+ +++ Y +R LF E+ + +WN +I +Y
Sbjct: 292 VIHGYVVKGGFENYLFVKNSLICLYGKHGNV----NAARILFLEIKTKNIVSWNALISSY 347
Query: 182 ARL-----AELLFNKMPAWD--------IRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
A L A +F ++ D + SW+ +I ++ Q EAL+ F + + +
Sbjct: 348 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKV 407
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY-CRSL-------GRSL--------------L 266
++ VT+A+VLS CA L AL LGR I + RSL G L L
Sbjct: 408 KANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNL 467
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF K+ K+L+ WN++ IHG A+ FD+M + P+G
Sbjct: 468 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 113 MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
++ + L +VHG V + GF + V ++ Y + ++R+V F+ M R
Sbjct: 147 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV----FERMAVRSCV 202
Query: 173 TWNTMIDAYA-----RLAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKT 223
+WNTM+ YA A +F M + + +WT++++S+++ Q E ++ F +
Sbjct: 203 SWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRM 262
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG--------------------- 262
+ G G+ +A VLS L A D G+ I Y G
Sbjct: 263 RMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNV 322
Query: 263 -RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM----TYENVRPN 310
+ ++F +++ KN++ WN++ + A G+ EA +F ++ Y VRPN
Sbjct: 323 NAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 375
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V ++ + V +++ Y+ S F E
Sbjct: 433 IHGHVVRSLMDGNILVGNGLINMYTKSGSFKE---------------------------- 464
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+F K+ D+ SW TM+ Y + A+ F++ K G D VT VLSAC
Sbjct: 465 --GNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSAC 522
Query: 243 AHLGALDLGR 252
+H G + GR
Sbjct: 523 SHAGLVAEGR 532
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
W +++ + + EAL+ + + +K G +D T V+ ACA +G+ L R + +
Sbjct: 103 WNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV 162
Query: 260 SL--------GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+ G L+ VF ++ ++ + WN++ A++ H A
Sbjct: 163 EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE 222
Query: 298 MFDRMTYENVRPN 310
MF M + PN
Sbjct: 223 MFRMMGSAGLEPN 235
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R TW TMID YA+L A+ LF++MP
Sbjct: 256 NSMIDGYVKHGRIEDAKG----LFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPH 311
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ F + K+S D T+ VL A A LG L
Sbjct: 312 RDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 371
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LAIHG
Sbjct: 372 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGL 431
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 432 GESAFDMLLQIERLSLKPD 450
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 58/192 (30%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +SR++FD MP+R ++N+MID Y
Sbjct: 143 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCL----GLSRQMFDRMPKRDSVSYNSMIDGYV 198
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q SD V +
Sbjct: 199 KCGLIVSARELFDLMPMEMKNLISWNSMISGYAQT-------------------SDGVDI 239
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
A+ L F + EK+L+ WNS+ + HG +A
Sbjct: 240 ASKL----------------------------FADMPEKDLISWNSMIDGYVKHGRIEDA 271
Query: 296 LGMFDRMTYENV 307
G+FD M +V
Sbjct: 272 KGLFDVMPRRDV 283
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR------- 252
W +I S+S K R+AL ++G D+ +++ VL AC+ LG + G
Sbjct: 89 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G+ + C LG S +F ++ +++ + +NS+ + G A
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARE 208
Query: 298 MFDRMTYE 305
+FD M E
Sbjct: 209 LFDLMPME 216
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 56/288 (19%)
Query: 75 FIDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT-------- 122
FI Y VF Q+ P+ V+ A+S L +A+ ++ M + V +
Sbjct: 45 FIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFK 104
Query: 123 -------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
VH V + GF S VF Q A+++ Y+ N + + FD + +
Sbjct: 105 SCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELI----FDGILVK 160
Query: 170 KFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
+N +I AY+R E+L F+KM I SW MI+ Y+QN + + F + +
Sbjct: 161 DTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQ 220
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSLG 262
+++T+ATVLS CA LG L++G I+ + C ++
Sbjct: 221 DEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVD 280
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
LVF + ++++ W+++ A +G ++EAL +F+ M ++PN
Sbjct: 281 DGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPN 328
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 22/148 (14%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
L+F+ M D+ +W+ MI Y+QN + EAL+ F K + + VT+ +VLSACA
Sbjct: 282 GRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQ 341
Query: 245 LGALDLGRGIQIYCRSLG----------------------RSLLVFFKLREKNLLCWNSI 282
LG+++ G I Y S G ++ +F KL +++ + WNS+
Sbjct: 342 LGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSM 401
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
LAI+GFA +A+ +++RM V+PN
Sbjct: 402 IMGLAINGFAEDAIALYNRMKEIEVKPN 429
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 56/188 (29%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V G S V+V +A++ YS ++R++ FD++P+R T
Sbjct: 355 VESRGLISNVYVASALLGMYSKCGNIIKARQI----FDKLPQRDNVT------------- 397
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
W +MI + N +A+ +N+ K+ + +T +++AC H G
Sbjct: 398 -------------WNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAG 444
Query: 247 ALDLGRG---------------------IQIYCRSLGRSLLVF-FKLR---EKNLLCWNS 281
++LG + ++CRS GR + + F R E N++ W +
Sbjct: 445 HVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRS-GRLIDAYEFICRMEVEPNVVIWGT 503
Query: 282 ITEALAIH 289
+ A IH
Sbjct: 504 LLSASRIH 511
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 144/333 (43%), Gaps = 63/333 (18%)
Query: 31 ANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF----IDYTILVFPQM 86
A+ L CS+ + ++A +V+ + D + ++F R + +D+++ + +
Sbjct: 28 ASLLAACSTARRASELHAAVVRKGLDSD-----RAVAFRLQRAYAASGRLDHSLTLLGRT 82
Query: 87 QEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT------------------VH 124
++P Y HA SS L +A ML +L T +H
Sbjct: 83 KDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALH 142
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
+K S +V TA++ Y+ + +R LFDEMP+ + M+ YA +
Sbjct: 143 AYAFKLALSGDSYVATALLSMYARAGDAA----AARALFDEMPDPHVVSVTAMLTCYANM 198
Query: 185 AEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
L LF+ +P D W MI Y+Q+ + EAL F + +S D+VT+ VL
Sbjct: 199 GALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVL 258
Query: 240 SACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNL 276
SA A LG ++ G+ + Y C SL ++ VF + K++
Sbjct: 259 SAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDI 318
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ WN++ A+HG + +AL MF ++ + + P
Sbjct: 319 VVWNAMINGYAMHGDSRKALEMFVQLRDQGLWP 351
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y + L +F+ + DI W MI Y+ + R+AL+ F + + G
Sbjct: 292 ALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWP 351
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+T +L+AC+H G ++ GR
Sbjct: 352 TDITFIGLLNACSHSGLVEEGR 373
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH ++ FS +F+Q ++D Y + ++R+ LFD MP+R TWN++I
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK----LFDRMPQRNTFTWNSLISVLT 92
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A LF MP D SW +M++ ++Q+ +F E+L+ F K + ++ + +
Sbjct: 93 KSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGS 152
Query: 238 VLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLRE 273
LSACA G +DL G Q++ C S+ + VF + E
Sbjct: 153 ALSACA--GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIE 210
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL+ WNS+ +G A EAL +F RM + P+
Sbjct: 211 RNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPD 247
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 139/316 (43%), Gaps = 45/316 (14%)
Query: 31 ANQLKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
+ L C+ + +L V+A + K+ + D ++ I S+ + VF M
Sbjct: 151 GSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM-YSKCGSVACAEEVFSGMI 209
Query: 88 EPNVFVYHAFSSLRH----PLQAIAFYLYMLRA-----EVLLTTV--------------- 123
E N+ +++ + +A+ ++ M+ + EV L +V
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 124 -HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
H +V K N F + + A+VD Y+ +K E+RRV FD M R + +M+ Y
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRV----FDRMSIRNVVSETSMVSGY 325
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
AR A + +F+KM ++ SW +I Y+QN + EAL F K+ T
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFG 385
Query: 237 TVLSACAHLGALDLGRGIQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+L + +G I +Y C S+ VF K++E++ + WN+I A +G+ E
Sbjct: 386 NLLKSDIFVG----NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAE 441
Query: 295 ALGMFDRMTYENVRPN 310
AL +F +M +P+
Sbjct: 442 ALQIFRKMLVCGEKPD 457
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 68/297 (22%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
KC + + ++ + + N F IS T + F+D +F M EP+ ++
Sbjct: 62 KCDCLDDARKLFDRMPQRNT----FTWNSLISVLT-KSGFLDEAARLFGSMPEPDQCSWN 116
Query: 96 AFSS--LRHPL--QAIAFYLYMLRAEVLL---------------------TTVHGQVWKN 130
+ S +H +++ +++ M R + LL T VH V K+
Sbjct: 117 SMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKS 176
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFN 190
+S+ V++ +A++D YS S + +F M ER TWN
Sbjct: 177 RYSTDVYMGSALIDMYSKCG----SVACAEEVFSGMIERNLVTWN--------------- 217
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++IT Y QN EAL+ F + SG D+VT+A+V+SACA L AL
Sbjct: 218 -----------SLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK- 265
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G+QI+ R + + K R+ +L+ N++ + A +EA +FDRM+ NV
Sbjct: 266 -EGLQIHARVVKTN-----KFRD-DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNV 315
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + + +F KM D SW +I Y+QN EAL F K G
Sbjct: 396 NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEK 455
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VTM VL AC+H G ++ GR
Sbjct: 456 PDHVTMIGVLCACSHAGLVEEGR 478
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R TW TMID YA+L A+ LF++MP
Sbjct: 249 NSMIDGYVKHGRIEDAKG----LFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPH 304
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ F + K+S D T+ VL A A LG L
Sbjct: 305 RDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 364
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LAIHG
Sbjct: 365 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGL 424
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 425 GESAFDMLLQIERLSLKPD 443
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 58/192 (30%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +SR++FD MP+R ++N+MID Y
Sbjct: 136 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCL----GLSRQMFDRMPKRDSVSYNSMIDGYV 191
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q SD V +
Sbjct: 192 KCGLIVSARELFDLMPMEMKNLISWNSMISGYAQT-------------------SDGVDI 232
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
A+ L F + EK+L+ WNS+ + HG +A
Sbjct: 233 ASKL----------------------------FADMPEKDLISWNSMIDGYVKHGRIEDA 264
Query: 296 LGMFDRMTYENV 307
G+FD M +V
Sbjct: 265 KGLFDVMPRRDV 276
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR------- 252
W +I S+S K R+AL ++G D+ +++ VL AC+ LG + G
Sbjct: 82 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 141
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G+ + C LG S +F ++ +++ + +NS+ + G A
Sbjct: 142 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARE 201
Query: 298 MFDRMTYE 305
+FD M E
Sbjct: 202 LFDLMPME 209
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 116/249 (46%), Gaps = 45/249 (18%)
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
H SL L+++A + A L VH K G + + V A++ ++
Sbjct: 207 HTLPSL---LKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHA------- 256
Query: 155 SRRVSRRLFDEMPERKFA------TWNTMIDAYARL-----AELLFNKMPAWDIRSWTTM 203
+ RL D + + A T+NT+I AYAR A LF++MPA + SW+ M
Sbjct: 257 --GILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAM 314
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--- 260
+ Y Q REAL F + + G D + VL+ACA LG L+ G+ + Y ++
Sbjct: 315 VNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNI 374
Query: 261 -----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
LG +L+ VF ++EKN+L W ++ + LA+HG EAL +F +
Sbjct: 375 RITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQ 434
Query: 302 MTYENVRPN 310
M V+P+
Sbjct: 435 MERLGVKPD 443
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ E+ +F M ++ +WTTMI + + + EAL+ F++ ++ G D
Sbjct: 384 LVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPD 443
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ L AC H G +D G R L S++ + ++ K + + + + LA +G
Sbjct: 444 DIAFIGALCACTHTGLVDKG-------RELFDSMVRKYGIKPK-IEHYGCMVDLLARNGL 495
Query: 292 AHEALGMFDRM 302
+EA M ++M
Sbjct: 496 LNEAREMVEKM 506
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 119 LLTTVHGQVWKN-GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
L +H V K GF++ + A++D Y+ ++R +FDEM + W +M
Sbjct: 317 LGDEIHNYVRKELGFTTRI--DNALLDMYAKCGCL----NIARNIFDEMSMKNVICWTSM 370
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I Y +L LF+K P D+ WT MI Y Q F +A+ F + + D+
Sbjct: 371 ISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDK 430
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
T+ T+L+ CA LGAL+ G+ I Y C + +SL +F++
Sbjct: 431 FTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 490
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L +K+ W SI LA++G EAL +F M +P+
Sbjct: 491 LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 530
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 44/305 (14%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+ C S+ +L+ + + I + D + ++FC S + Y +F +Q+P++F
Sbjct: 104 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLF 163
Query: 93 VYHAFSSL---RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149
VY+ + R L+ + LR + L W +GF+ P FV A+
Sbjct: 164 VYNVMVKIYAKRGILRKVLLLFQQLREDGL--------WPDGFTYP-FVLKAI----GCL 210
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ +V + + +N++ID Y L A+ LF++M D SW MI
Sbjct: 211 RDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 270
Query: 205 TSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCRS--- 260
+ Y + ++F +A++ F + ++ G D+ T+ + LSAC L L+LG I Y R
Sbjct: 271 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELG 330
Query: 261 ----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ +LL +F ++ KN++CW S+ G EA +FD+
Sbjct: 331 FTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKS 390
Query: 303 TYENV 307
+V
Sbjct: 391 PVRDV 395
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 72 RFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
+FH D + +F +MQ +P+ F + L A+ + +HG +
Sbjct: 407 QFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKW----------IHGYL 456
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
+N + V V TA+++ YS +S + L D+
Sbjct: 457 DENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK---------------------- 494
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
D SWT++I + N + EAL F++ ++ G D +T VLSAC+H G
Sbjct: 495 --------DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL 546
Query: 248 LDLGR 252
++ GR
Sbjct: 547 VEEGR 551
>gi|255578953|ref|XP_002530329.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530133|gb|EEF32045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 342
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 43/232 (18%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSY------SNKFFESRRVSRRLFDEMPERKF----- 171
+H V+K G FVQTA++ Y + K F+ R SR L M F
Sbjct: 73 LHSHVFKTGCLLEPFVQTALISMYGRCALIDNARKVFDENRQSRILEVGMSIHGFCVKFG 132
Query: 172 -----ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
+ N ++ Y + E+ LFN +P + +W MI YSQN + L+ +
Sbjct: 133 LVMDMSVGNCLLTMYVKCGEVGSARKLFNDIPGKGLITWNAMINGYSQNGLATDVLELYR 192
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IY--CR 259
+ + SG D VT+A VLS+CAHLGA +GR I+ +Y C
Sbjct: 193 EMELSGVSPDAVTLAGVLSSCAHLGAQSVGREIEERMNVCGFASNPFLNNALINLYARCG 252
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+L R+ +F + K+++ W +I +HG A+ +F+ M VRP+G
Sbjct: 253 NLVRARDIFDGMPVKSVVSWTAILGGYGMHGEGETAVKLFNDMIRTGVRPDG 304
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 155 SRRVSRRLFDEMPERKFATW----NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
++ V R + + M FA+ N +I+ YAR L +F+ MP + SWT ++
Sbjct: 218 AQSVGREIEERMNVCGFASNPFLNNALINLYARCGNLVRARDIFDGMPVKSVVSWTAILG 277
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
Y + + A+ FN ++G D +VLSAC+H G +D G
Sbjct: 278 GYGMHGEGETAVKLFNDMIRTGVRPDGTAFVSVLSACSHAGLIDKG 323
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 136/330 (41%), Gaps = 84/330 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C+++ +L ++ I+K + + + +F S +S H DY F E + +
Sbjct: 36 LQACNALPKLTQIHTHILKLGLHNNPLVLTKFASI-SSLIHATDYAA-SFLFSAEADTRL 93
Query: 94 YHAF----------SSLRHPLQAIAFYLYMLRAEVLLT---------------------T 122
Y AF + +A+A Y ML +L T
Sbjct: 94 YDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQT 153
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K GF + VQ MV YS S +R++FDEMP+
Sbjct: 154 VHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINS---ARKVFDEMPKS------------- 197
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D +W+ MI Y++ + EA+ F + + + D++TM ++LSAC
Sbjct: 198 -------------DSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSAC 244
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
LGAL+LG+ I+ Y C + ++L +F + EK ++ W
Sbjct: 245 TDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWT 304
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ +A+HG EA +F+ MT V P+
Sbjct: 305 SVIVGMAMHGRGQEATCLFEEMTSSGVAPD 334
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 132/311 (42%), Gaps = 76/311 (24%)
Query: 65 FISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRA 116
+ C HF + Y I VF +QEPN+ ++ HA SS P+ A+ Y+ M+
Sbjct: 1 LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSS--DPVSALEMYVRMVSL 58
Query: 117 EVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155
L + +H QV K G +V T+++ Y+ + ++
Sbjct: 59 GHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDA 118
Query: 156 RRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQN 210
R+V FD R + +I YA R A +F+++ D+ SW MIT Y +N
Sbjct: 119 RKV----FDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVEN 174
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------- 257
++ EAL+ F + ++ D+ T+ +V+SACA G+++LGR + +
Sbjct: 175 GRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSS 234
Query: 258 -------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMF 299
C + + +F L K+++ WN++ I G+ H EAL +F
Sbjct: 235 LKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTL-----IGGYTHTNLYKEALLLF 289
Query: 300 DRMTYENVRPN 310
M PN
Sbjct: 290 QEMLRSGECPN 300
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ ++ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 239 NALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC 298
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VT+ +VL ACAHLGA+D+GR I +Y C + +
Sbjct: 299 PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAH 358
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + ++L WN++ A+HG A+ A +F RM V P+
Sbjct: 359 QVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPD 403
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN M + SW MI ++ + + A D F++ + +
Sbjct: 343 SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D +T +LSAC+H G LDLGR QI+ +S+ + L K L + + + L G
Sbjct: 403 DDITFVGLLSACSHSGLLDLGR--QIF-----KSMTQDYNLTPK-LEHYGCMIDLLGHSG 454
Query: 291 FAHEALGMFDRMTYENVRPNG 311
EA M M E P+G
Sbjct: 455 LFKEAEEMIHTMPME---PDG 472
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 119 LLTTVHGQVWKN-GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
L +H V K GF++ + A++D Y+ ++R +FDEM + W +M
Sbjct: 363 LGDEIHNYVRKELGFTTRI--DNALLDMYAKCGCL----NIARNIFDEMSMKNVICWTSM 416
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
I Y +L LF+K P D+ WT MI Y Q F +A+ F + + D+
Sbjct: 417 ISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDK 476
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
T+ T+L+ CA LGAL+ G+ I Y C + +SL +F++
Sbjct: 477 FTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 536
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L +K+ W SI LA++G EAL +F M +P+
Sbjct: 537 LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 576
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 44/305 (14%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+ C S+ +L+ + + I + D + ++FC S + Y +F +Q+P++F
Sbjct: 150 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLF 209
Query: 93 VYHAFSSL---RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149
VY+ + R L+ + LR + L W +GF+ P FV A+
Sbjct: 210 VYNVMVKMYAKRGILRKVLLLFQQLREDGL--------WPDGFTYP-FVLKAI----GCL 256
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ +V + + +N++ID Y L A+ LF++M D SW MI
Sbjct: 257 RDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 316
Query: 205 TSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCRS--- 260
+ Y + ++F +A++ F + ++ G D+ T+ + LSAC L L+LG I Y R
Sbjct: 317 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELG 376
Query: 261 ----LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ +LL +F ++ KN++CW S+ G EA +FD+
Sbjct: 377 FTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKS 436
Query: 303 TYENV 307
+V
Sbjct: 437 PVRDV 441
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 44/185 (23%)
Query: 72 RFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
+FH D + +F +MQ +P+ F + L A+ + +HG +
Sbjct: 453 QFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKW----------IHGYL 502
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
+N + V V TA+++ YS +S + L D+
Sbjct: 503 DENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK---------------------- 540
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
D SWT++I + N + EAL F++ ++ G D +T VLSAC+H G
Sbjct: 541 --------DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL 592
Query: 248 LDLGR 252
++ GR
Sbjct: 593 VEEGR 597
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 39/225 (17%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+HG V K GF + +FV+ +++ Y +R LF E+ + +WN +I +Y
Sbjct: 292 VIHGYVVKGGFENYLFVKNSLICLYGKHGNV----NAARILFLEIKTKNIVSWNALISSY 347
Query: 182 ARL-----AELLFNKMPAWD--------IRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
A L A +F ++ D + SW+ +I ++ Q EAL+ F + + +
Sbjct: 348 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKV 407
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY-CRSL-------GRSL--------------L 266
++ VT+A+VLS CA L AL LGR I + RSL G L L
Sbjct: 408 KANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNL 467
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF K+ K+L+ WN++ IHG A+ FD+M + P+G
Sbjct: 468 VFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 113 MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
++ + L +VHG V + GF + V ++ Y + ++R+V F+ M R
Sbjct: 147 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV----FERMAVRSCV 202
Query: 173 TWNTMIDAYA-----RLAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKT 223
+WNTM+ YA A +F M + + +WT++++S+++ Q E ++ F +
Sbjct: 203 SWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRM 262
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG--------------------- 262
+ G G+ +A VLS L A D G+ I Y G
Sbjct: 263 RMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNV 322
Query: 263 -RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM----TYENVRPN 310
+ ++F +++ KN++ WN++ + A G+ EA +F ++ Y VRPN
Sbjct: 323 NAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 375
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V ++ + V +++ Y+ S F E
Sbjct: 433 IHGHVVRSLMDGNILVGNGLINMYTKSGSFKE---------------------------- 464
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+F K+ D+ SW TM+ Y + A+ F++ K G D VT VLSAC
Sbjct: 465 --GNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSAC 522
Query: 243 AHLGALDLGR 252
+H G + GR
Sbjct: 523 SHAGLVAEGR 532
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
W +++ + + EAL+ + + +K G +D T V+ ACA +G+ L R + +
Sbjct: 103 WNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV 162
Query: 260 SLG----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+G + VF ++ ++ + WN++ A++ H A
Sbjct: 163 EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE 222
Query: 298 MFDRMTYENVRPN 310
MF M + PN
Sbjct: 223 MFRMMGSAGLEPN 235
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 27/170 (15%)
Query: 168 ERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E N ++D Y + LA +F+ + A DI SWT MI+ Q K+ EAL+ FN
Sbjct: 248 ELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNA 307
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQ-------------IYCRS 260
+ SG D+V ++TVLSACA LGAL+ GR GI+ + C
Sbjct: 308 MQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGC 367
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L ++ +F ++ KN+ WN++ A+HG EAL FDRM + PN
Sbjct: 368 LDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPN 417
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 159 SRRLFDEMPERKFATWN-----TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
S R E ERK W+ +++D Y + L +F +MP ++ SW +I ++
Sbjct: 335 SGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFA 394
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + REALD F++ SG ++VT TVL AC H G + GR
Sbjct: 395 LHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGR 438
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 55/209 (26%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H K GF V VQ A+V Y + ++R+V FDEM ER
Sbjct: 141 HAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKV----FDEMAER-------------- 182
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
D+ SWT +++++++ F EAL + + ++VT+A+VL AC
Sbjct: 183 ------------DVVSWTALLSAFTRGGMFMEALGVLAEMDVT---PNEVTLASVLVACG 227
Query: 244 HLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNS 281
+LG G+ + + C L + VF L ++++ W
Sbjct: 228 NLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTV 287
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L EAL +F+ M V+P+
Sbjct: 288 MISGLVQCKRPSEALEVFNAMQISGVKPD 316
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 63/251 (25%)
Query: 80 ILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQ 139
IL+F + PN+F Y SS+ + L +H + K G S VFV+
Sbjct: 144 ILMFREGVRPNMFTY---SSVLRACDGLPN----------LRQLHCGIIKTGLESDVFVR 190
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRS 199
+A++D YS + + V FDEMP R WN++I +A
Sbjct: 191 SALIDVYSKWSDLDNALGV----FDEMPTRDLVVWNSIIGGFA----------------- 229
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-- 257
QN EAL+ F + K++G +DQ T+ +VL AC L L+LGR + ++
Sbjct: 230 ---------QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVL 280
Query: 258 ------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
C SL + F ++ EK+++ W+++ LA +G++ +AL +F
Sbjct: 281 KFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF 340
Query: 300 DRMTYENVRPN 310
+ M RPN
Sbjct: 341 ESMKESGSRPN 351
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 25/198 (12%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL---- 184
++G + + ++ S E +RV +F + E K NT+++ Y +
Sbjct: 48 RHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLE 107
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
AE LF++MP ++ SWTTMI++YS NK +AL + G + T ++VL AC
Sbjct: 108 EAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACD 166
Query: 244 --------HLGALDLGRGIQIYCRS-----------LGRSLLVFFKLREKNLLCWNSITE 284
H G + G ++ RS L +L VF ++ ++L+ WNSI
Sbjct: 167 GLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIG 226
Query: 285 ALAIHGFAHEALGMFDRM 302
A + +EAL +F RM
Sbjct: 227 GFAQNSDGNEALNLFKRM 244
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 114/259 (44%), Gaps = 36/259 (13%)
Query: 4 KYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAK 63
K ++ +I F++ P ++ ++ L+ C + L ++ I+KT D F+
Sbjct: 138 KALKCLILMFREGVRPNMFTY------SSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS 191
Query: 64 QFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVL 119
I S++ +D + VF +M ++ V++ F+ +A+ + M RA
Sbjct: 192 ALIDV-YSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRA--- 247
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRL--FDEMPERKFATWNTM 177
GF + T+++ + R+V + FD+ N +
Sbjct: 248 -----------GFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQ----DLILNNAL 292
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
ID Y + L F++M D+ SW+TM+ +QN R+AL+ F K+SG+ +
Sbjct: 293 IDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNY 352
Query: 233 VTMATVLSACAHLGALDLG 251
+T+ VL AC+H G ++ G
Sbjct: 353 ITVLGVLFACSHAGLVEKG 371
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 27/184 (14%)
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
E +++ LFD MP R +TWNTMI YA+ ++ LF+KMP D SW MI YS
Sbjct: 321 ERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS 380
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------- 255
Q+ EAL F ++ G ++ + ++ LS CA + AL+LG+ +
Sbjct: 381 QSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCF 440
Query: 256 -------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
+YC+ S+ + +F ++ K+++ WN++ + HGF EAL F+ M E
Sbjct: 441 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREG 500
Query: 307 VRPN 310
++P+
Sbjct: 501 LKPD 504
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
AM+ Y + +F ++R LFDEMPER +WN MI Y R A LF +MP
Sbjct: 94 NAMISGYLRNGEF----ELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPE 149
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG------SDQVTMATVLSACAHLGAL 248
D+ SW T+++ Y+QN +A F++ + S V + + AC G+
Sbjct: 150 RDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSR 209
Query: 249 DLGRGIQIYC--------RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+ + C + + + F ++ ++++ WN+I A +G EA +FD
Sbjct: 210 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD 269
Query: 301 RMTYENV 307
+V
Sbjct: 270 ESPVHDV 276
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ FD M R +WNT+I YA+ E+ LF++ P D+ +WT M++ Y QN+
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMV 292
Query: 214 REALDAFNKTKKSGTGS-----------DQVTMATVL---SACAHLGALDLGRGIQIYCR 259
EA + F++ + S ++V MA L C ++ + C
Sbjct: 293 EEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCG 352
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + +F K+ +++ + W ++ + G ++EAL +F M E R N
Sbjct: 353 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLN 403
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+F MP ++N MI Y R LA +LF++MP D+ SW MI Y +N+ +
Sbjct: 80 RVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGK 139
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A + F + + D + T+LS A G +D R VF ++ EKN
Sbjct: 140 ARELFERMPE----RDVCSWNTILSGYAQNGCVDDAR-------------RVFDRMPEKN 182
Query: 276 LLCWNSITEALAIHGFAHEALGMF 299
+ WN++ A + EA +F
Sbjct: 183 DVSWNALLSAYVQNSKLEEACVLF 206
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 30/134 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HG++ K G+ + FV A++ Y E
Sbjct: 422 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE------------------------ 457
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A LF +M DI SW TMI YS++ EAL F K+ G D TM V
Sbjct: 458 ------ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAV 511
Query: 239 LSACAHLGALDLGR 252
LSAC+H G +D GR
Sbjct: 512 LSACSHTGLVDKGR 525
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI- 254
DI+ W I+SY + + EAL F + + + V+ ++S G +L R +
Sbjct: 58 DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSS----VSYNAMISGYLRNGEFELARMLF 113
Query: 255 -----------------QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+ R+LG++ +F ++ E+++ WN+I A +G +A
Sbjct: 114 DEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARR 173
Query: 298 MFDRMTYEN 306
+FDRM +N
Sbjct: 174 VFDRMPEKN 182
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 38/221 (17%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q+ G FV+T++++ YS R ++R+FD+ + WN++++AYA+
Sbjct: 85 HAQILLFGLDKDPFVRTSLLNMYSSCGDL----RSAQRVFDDSGSKDLPAWNSVVNAYAK 140
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN-----KTKKSGTGSDQV 233
A LF++MP ++ SW+ +I Y +++EALD F K ++ ++
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM+TVLSAC LGAL+ G+ + Y C SL R+ VF L
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTY-ENVRPN 310
+K++ ++++ LA++G E +F MT +N+ PN
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPN 301
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K GF + +FV+ +++ Y +R LF E+ + +WN +I +YA
Sbjct: 1131 IHGYVVKGGFENYLFVKNSLICLYGKHGNV----NAARILFLEIKTKNIVSWNALISSYA 1186
Query: 183 RL-----AELLFNKMPAWD--------IRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
L A +F ++ D + SW+ +I ++ Q EAL+ F + + +
Sbjct: 1187 DLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVK 1246
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY-CRSL-------GRSL--------------LV 267
++ VT+A+VLS CA L AL LGR I + RSL G L LV
Sbjct: 1247 ANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLV 1306
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F K+ K+L+ WN++ IHG A+ FD+M + P+G
Sbjct: 1307 FEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 1350
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 113 MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
++ + L +VHG V + GF + V ++ Y + ++R+V F+ M R
Sbjct: 985 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV----FERMAVRSCV 1040
Query: 173 TWNTMIDAYA-----RLAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKT 223
+WNTM+ YA A +F M + + +WT++++S+++ Q E ++ F +
Sbjct: 1041 SWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRM 1100
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG--------------------- 262
+ G G+ +A VLS L A D G+ I Y G
Sbjct: 1101 RMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNV 1160
Query: 263 -RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM----TYENVRPN 310
+ ++F +++ KN++ WN++ + A G+ EA +F ++ Y VRPN
Sbjct: 1161 NAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPN 1213
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V ++ + V +++ Y+ S F E
Sbjct: 1271 IHGHVVRSLMDGNILVGNGLINMYTKSGSFKE---------------------------- 1302
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+F K+ D+ SW TM+ Y + A+ F++ K G D VT VLSAC
Sbjct: 1303 --GNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSAC 1360
Query: 243 AHLGALDLGR 252
+H G + GR
Sbjct: 1361 SHAGLVAEGR 1370
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
W +++ + + EAL+ + + +K G +D T V+ ACA +G+ L R + +
Sbjct: 941 WNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV 1000
Query: 260 SLG----------------------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+G + VF ++ ++ + WN++ A++ H A
Sbjct: 1001 EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE 1060
Query: 298 MFDRMTYENVRPN 310
MF M + PN
Sbjct: 1061 MFRMMGSAGLEPN 1073
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 111/274 (40%), Gaps = 87/274 (31%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------ 158
+H ++ K GF +FV+ +++ YS + ++R +
Sbjct: 32 IHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGE 91
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQN 210
+R LF+EMPER +WN+MI Y AE LFNKMP DI SW MI Y+Q
Sbjct: 92 IGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQV 151
Query: 211 -------------------------------KQFREALDAFNKTKKSGTGSDQVTMATVL 239
K + E L F+K T ++ T+ +VL
Sbjct: 152 QNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGE-TMPNEATLVSVL 210
Query: 240 SACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKNL 276
+ACAHLG LD G+ I Y C ++ + VF K+ +++
Sbjct: 211 TACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSV 270
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WNS+ +HG A +AL MF M PN
Sbjct: 271 VSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPN 304
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LA +F+KM + SW +MI Y + Q +AL+ F +K G + T VLSACA
Sbjct: 257 LARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACA 316
Query: 244 HLGAL 248
H G +
Sbjct: 317 HSGMI 321
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 130/303 (42%), Gaps = 62/303 (20%)
Query: 64 QFISFCTSRFHF--IDYTILVFPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLR 115
Q + FC HF + Y I VF ++EPN+ ++ HA +S + A+ Y+ M+
Sbjct: 9 QLLEFCVLSPHFDGLPYAISVFETIEEPNLLIWNTMFRGHALNS--DSVSALKLYVCMIS 66
Query: 116 AEVLLTT---------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+L + +HG V K G+ ++V T+++ Y+ + + +
Sbjct: 67 LGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLED 126
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQ 209
+ +V FD R ++ +I YA + A LF+++ DI SW MI+ Y +
Sbjct: 127 AHKV----FDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVE 182
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ-------------- 255
++EAL+ + + K+ D+ TM TV+SACA ++LGR +
Sbjct: 183 TFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKV 242
Query: 256 ------IY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+Y C + + +F L K+ + WN++ EAL +F M
Sbjct: 243 VNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGE 302
Query: 308 RPN 310
PN
Sbjct: 303 SPN 305
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 29/185 (15%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
R+V + D N ++D Y++ E+ LF + D SW T+I ++
Sbjct: 224 GRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTH 283
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------ 257
++EAL F + +SG + VTM +VLSACAHLGA+D+GR I +Y
Sbjct: 284 MNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSS 343
Query: 258 ------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C + + VF + ++L WN++ A+HG A+ A +F +M
Sbjct: 344 SLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKS 403
Query: 306 NVRPN 310
+ P+
Sbjct: 404 GIEPD 408
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +F+ M A + SW MI ++ + + A D F+K +KSG
Sbjct: 348 SLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEP 407
Query: 231 DQVTMATVLSACAHLGALDLGRGI 254
D +T +LSAC+H G LDLGR I
Sbjct: 408 DDITFVGLLSACSHSGMLDLGRHI 431
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 99/233 (42%), Gaps = 62/233 (26%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR------------ 183
V T MVD + S K E+R LFD MPER +WN MI Y R
Sbjct: 198 VMAWTTMVDGVARSGKVDEARV----LFDSMPERNVVSWNAMISGYTRNHRIDEALDLFM 253
Query: 184 ------------------------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
A LF++MP ++ +WTTM+ Y + KQ AL
Sbjct: 254 KMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGL 313
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI-QIYCRS------------------ 260
F+ +GT +QVT L AC+ L AL G+ + Q+ C++
Sbjct: 314 FSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAK 373
Query: 261 ---LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+G + +F REK+L+ WN I A A HG EA+ ++++M RPN
Sbjct: 374 CGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPN 426
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LF MPER W TM+D AR A +LF+ MP ++ SW MI+ Y++N +
Sbjct: 186 ARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRI 245
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
EALD F K + S + + I + L R+ +F ++ E
Sbjct: 246 DEALDLFMKMPERDIASCNIMVTGF-----------------IQNKDLKRARELFDEMPE 288
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ W ++ + ALG+F M RPN
Sbjct: 289 RNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPN 325
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERK-FATWNTMIDAYARL-----AELLFNKMP 193
TA+V Y+ R +R LFD R+ TW ++ YAR AE LF +MP
Sbjct: 77 TALVSAYARRGML----RDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRMP 132
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
++ SW TM+ +Y+ + +A F++ GS + +AT++ + G++D R
Sbjct: 133 QRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRS----GSVDKARE 188
Query: 254 IQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ F ++ E++++ W ++ + +A G EA +FD M NV
Sbjct: 189 L-------------FGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNV 229
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+ P WD+ SWT ++++Y++ R+A + F++ + VT +LS A
Sbjct: 61 ARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDAR---RNVVTWTALLSGYAR 117
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
R + + +F ++ ++N++ WN++ EA A G +A +FDRM
Sbjct: 118 -------------ARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM 162
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 57/200 (28%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + K F FV++A+++ Y+ + ++R+LFD E+
Sbjct: 348 VHQMICKTTFQFDAFVESALMNVYAKCGEIG----LARKLFDLSREK------------- 390
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW +I +Y+ + EA+ + K +++G + VT +LSAC
Sbjct: 391 -------------DLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSAC 437
Query: 243 AHLGALDLG----------RGIQI----------YCRSLGR-----SLLVFFKLREKNLL 277
+H G +D G R I + C GR L+ + K++ +
Sbjct: 438 SHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGS 497
Query: 278 CWNSITEALAIHGFAHEALG 297
W+++ HG +E++G
Sbjct: 498 VWSALLGGCNAHG--NESIG 515
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 149/358 (41%), Gaps = 76/358 (21%)
Query: 24 FIRIH---------IIANQLKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTS 71
F+R+H + L CS +K+L+ ++ I K+ +LD F+ I F S
Sbjct: 144 FVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDF-YS 202
Query: 72 RFHFIDYTILVFPQMQEPNVFVYHAFSSLRH----PLQAIAFYLYMLR-----AEVLLTT 122
+ + VF M+E NV ++ + ++A+ + M EV L +
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262
Query: 123 V----------------HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165
V H +V K + F + + + A+VD Y+ + E+R V FD
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCV----FDR 318
Query: 166 MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
MP R + TM+ YA+ A + +F + DI SW +I Y+QN + EAL F
Sbjct: 319 MPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------------------------I 254
K+ T +L+A A+L L+LGR I
Sbjct: 379 RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLI 438
Query: 255 QIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+Y C S+ L VF + EK+ + WN++ A +G+ EAL +F +M +P+
Sbjct: 439 DMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPD 496
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 31/224 (13%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
LR+ +VHG++ + F VF+Q ++D Y +R+V FD M ER +
Sbjct: 37 LRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKV----FDRMSERNVFS 92
Query: 174 WNTMIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+N++I R LF+ MP D SW +MI ++Q+ +F EALD F + +
Sbjct: 93 FNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDF 152
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLL 266
+ + + LSAC+ L L LG I C +G +
Sbjct: 153 VLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARR 212
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + EKN++ WN + +G A EAL F RMT +P+
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPD 256
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F E N++ID Y + + +F M D SW TMI Y+QN EAL
Sbjct: 423 FQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEAL 482
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ F K +SG D VTM L AC+H G ++ GR
Sbjct: 483 ELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGR 517
>gi|255580411|ref|XP_002531032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529385|gb|EEF31349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 392
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 38/311 (12%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEPNVF 92
L+KC ++ E++ ++A I+ F+ + ++ + S+ I+Y VF QM P+ F
Sbjct: 18 LRKCKNVAEIKQIHAHIITNGLARFTFITSKILALYAVSQNGDINYAQAVFNQMPLPSSF 77
Query: 93 VYHA----FSSLRHPLQAIAFYLYM--LRAEV----------------LLTTVHGQVWKN 130
+++ FS + I+ + M +R E LL VH Q+ K
Sbjct: 78 DFNSMILGFSQNSLSQKGISLFARMNSIRIETNTHTFTSLLKCCFCLSLLDQVHCQILKY 137
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-----DAYARLA 185
G+ S V++ ++++ YS +R++FDE + W ++I + A
Sbjct: 138 GYKSDVYINSSVISMYSKHGAV----EYARQVFDESSDTNVVCWTSLISGCCINGLIDEA 193
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAH 244
+F++MP + S++ M++ + +N F EA+ F + K G + + +VL+ACA
Sbjct: 194 REMFDRMPERNEVSYSAMVSGFVRNGFFNEAIALFRELKICGNVRFNASLLVSVLNACAA 253
Query: 245 LGALDLGRGIQIYCRSLGRS-----LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
+GA G+ I Y G S + +F +++ K++ W+++ LAI+G H +G+F
Sbjct: 254 IGAFQDGKCIHSYADMHGFSCELQIVDLFSRMQYKDVTTWSAMILGLAINGENHRGIGLF 313
Query: 300 DRMTYENVRPN 310
M + + N
Sbjct: 314 AEMERKGPKAN 324
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 26/260 (10%)
Query: 8 AIITSFKKNSFPTS-------VSFIRI----HIIANQLKKCSSIKELECVYATIVKTNAN 56
++I F +NS ++ IRI H + LK C + L+ V+ I+K
Sbjct: 81 SMILGFSQNSLSQKGISLFARMNSIRIETNTHTFTSLLKCCFCLSLLDQVHCQILKYGYK 140
Query: 57 LDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYML-- 114
D ++ IS S+ ++Y VF + + NV + + S I M
Sbjct: 141 SDVYINSSVISM-YSKHGAVEYARQVFDESSDTNVVCWTSLISGCCINGLIDEAREMFDR 199
Query: 115 ---RAEVLLTTVHGQVWKNGF---SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
R EV + + +NGF + +F + + N ++ S + +
Sbjct: 200 MPERNEVSYSAMVSGFVRNGFFNEAIALFRELKICGNVRFNASLLVSVLNACAAIGAFQD 259
Query: 169 RKFATWNTMIDAYARLAEL----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
K ++ D + EL LF++M D+ +W+ MI + N + + F + +
Sbjct: 260 GK--CIHSYADMHGFSCELQIVDLFSRMQYKDVTTWSAMILGLAINGENHRGIGLFAEME 317
Query: 225 KSGTGSDQVTMATVLSACAH 244
+ G ++ VT VL+AC H
Sbjct: 318 RKGPKANAVTFMGVLTACNH 337
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+++D Y + +++ LFD MP R TW TMID YA+L A+ LF+ MP
Sbjct: 220 NSLIDGYVKHGRIEDAKG----LFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPH 275
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ F + K+S D+ T+ VLSA A LG L
Sbjct: 276 RDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD 335
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
I +Y C S+ +++ VF + K++ WN++ LA+HG
Sbjct: 336 IHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGL 395
Query: 292 AHEALGMFDRMTYENVRPN 310
A M + ++P+
Sbjct: 396 GEAAFDMLMEIEKRFIKPD 414
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K S +F+Q ++ Y + +R+V FD MP+R ++N+MID Y
Sbjct: 107 IHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQV----FDRMPQRDSVSYNSMIDGYV 162
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI Y+Q + + +D +K D ++
Sbjct: 163 KCGLIESARELFDLMPKEKKNLISWNSMIGGYAQRE---DGVDIASKLFAEMPEKDLISW 219
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ G ++ +G+ F + ++++ W ++ + A GF H+A
Sbjct: 220 NSLIDGYVKHGRIEDAKGL-------------FDVMPRRDVVTWATMIDGYAKLGFVHKA 266
Query: 296 LGMFDRMTYENV 307
+FD M + +V
Sbjct: 267 KSLFDVMPHRDV 278
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 22/128 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR------- 252
W +I S+S R+AL ++ D+ +++ V AC+ LG G
Sbjct: 53 WNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGFLT 112
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G+ I C LG + VF ++ +++ + +NS+ + G A
Sbjct: 113 KTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 172
Query: 298 MFDRMTYE 305
+FD M E
Sbjct: 173 LFDLMPKE 180
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 97/215 (45%), Gaps = 58/215 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q+ K+GFS V+V ++ Y ++R++FDEMPER +WN+MIDA
Sbjct: 154 VHCQIVKHGFSGDVYVNNGLIHFYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALV 209
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R+ E + AL F +KS D TM +VLSAC
Sbjct: 210 RVGE--------------------------YDSALQLFRDMQKSFE-PDGYTMQSVLSAC 242
Query: 243 AHLGALDLGRG-----------------------IQIYCR--SLGRSLLVFFKLREKNLL 277
A LG+L LG I++YC+ SL + VF +R+ +L
Sbjct: 243 AGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLA 302
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYE--NVRPN 310
WN++ A HG A EA+ FD M E NV+PN
Sbjct: 303 SWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPN 337
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I+ Y R+AE +F M D+ SW MI ++ + + EA++ F+ K G
Sbjct: 274 NSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKN 333
Query: 230 --SDQVTMATVLSACAHLGALDLGRG-IQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+ VT +L AC H G ++ GR + R G E L + I + L
Sbjct: 334 VKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYG---------IEPALEHYGCIIDLL 384
Query: 287 AIHGFAHEALGMFDRM 302
A G+ EA+ M M
Sbjct: 385 ARAGYITEAIDMVMSM 400
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH +V + + + A++D Y + ++R LFD M + +W +M++ YA
Sbjct: 380 VHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARE----LFDRMATKDVYSWTSMVNGYA 435
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +L F++ P + W+ MI YSQN + +E+L F++ + G + T+ +
Sbjct: 436 KCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVS 495
Query: 238 VLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREK 274
VLSAC L L+LG I Y C S+ + VF + E+
Sbjct: 496 VLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPER 555
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL+ WN++ A +G A +A+ +FD+M PN
Sbjct: 556 NLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPN 591
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 73/304 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
++ CS++++L+ + A + T F + I+FC + + Y +F ++++PN F
Sbjct: 164 MESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTF 223
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
+++ + + R P+ A +F++YM + V + + V+ V
Sbjct: 224 MWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVV 283
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
WK GF + V+ ++ Y+ +R+V FDE ++ TW TMID YA
Sbjct: 284 WKMGFDCELLVRNGLIHFYAERGLLKNARQV----FDESSDKDVVTWTTMIDGYA----- 334
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
A D EA++ F S ++VT+ V+SAC+ +G
Sbjct: 335 ------AHDCS---------------EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGN 373
Query: 248 LDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL----GMFDRMT 303
L++G+ + K+ EKN+ C S+ AL + L +FDRM
Sbjct: 374 LEMGKRVH-------------EKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMA 420
Query: 304 YENV 307
++V
Sbjct: 421 TKDV 424
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F+ MP ++ SW TMI Y+ N + ++A++ F++ + G
Sbjct: 530 NAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFE 589
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+ +T ++L+AC+H G + GR
Sbjct: 590 PNNITFVSLLTACSHGGLISEGR 612
>gi|356540832|ref|XP_003538888.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g51320-like [Glycine max]
Length = 560
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 135/325 (41%), Gaps = 57/325 (17%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF---- 92
C + + L + A +V ++ + FLA+ +S + +F YT+L+F + F
Sbjct: 68 CRNARHLLQMQALLVTSSLFRNPFLARTVLSRASHLCNFA-YTLLIFRTINSLGTFCVNT 126
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNG 131
V ++ + P +AI FY L + H Q KNG
Sbjct: 127 VIKSYCNSHAPREAIVFYFRSLMCGFFPNSYTFVPLVASCAKMGCIDSGKECHAQATKNG 186
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL---- 187
S + VQ +++ Y+ +++R LFD M R + N++ID + EL
Sbjct: 187 VDSVLPVQNSLIHMYACCGDV----QLARVLFDGMLSRDLVSRNSIIDGIMMVGELNAAH 242
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
L N+MP ++ +W MI+ Y + + A+ F + + G D TM V +AC G
Sbjct: 243 RLLNEMPDRNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGDARTMVCVATACGRSG 302
Query: 247 ALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITE 284
L G+ I +Y CR + + VF ++ E+NL+ WN++
Sbjct: 303 RLKEGKSVYGSIVRMLVRSSLILDTVLIDMYCKCRKVEDARRVFERMGERNLVSWNAMIL 362
Query: 285 ALAIHGFAHEALGMFDRMTYENVRP 309
I G + LG+FD M V P
Sbjct: 363 GHCIRGSPEDGLGLFDVMIGSKVAP 387
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 74/330 (22%)
Query: 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAF---S 98
+L ++A I++ + + + FIS C + + Y LVF Q Q PN+ ++++
Sbjct: 24 QLPQIHAHILRHHLHQSNQILSHFISVCGA-LDKMGYANLVFHQTQNPNLLLFNSMIKGY 82
Query: 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS-SPVF-------------------- 137
SL P + ++ +W + F+ +P+
Sbjct: 83 SLCGPSENSLLLFSQMKNR--------GIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVI 134
Query: 138 ---------VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
++ ++D Y+ + ++++V FDEM +R WN MI + ++ ++
Sbjct: 135 VVGFERFSSIRIGIIDLYTSCGRMEDAKKV----FDEMLDRDVIVWNMMIRGFCKVGDIE 190
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
LF +M + SW +MI Q+ + EAL+ F + G D T+ T+L CA
Sbjct: 191 MGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCA 250
Query: 244 HLGALDLGRGIQIYCR---------SLGRSLL--------------VFFKLREKNLLCWN 280
LGA+D+G I Y S+G SL+ VF ++ +KN++ WN
Sbjct: 251 RLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWN 310
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ L +G +F+ M + VRPN
Sbjct: 311 AMISGLTFNGKGELGADLFEEMINKGVRPN 340
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 33/199 (16%)
Query: 126 QVWKNGFSS---------PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
++W +GF PV + VD + + + ES R+ R + N+
Sbjct: 229 EMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFI--------SVGNS 280
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D Y + L +FN+MP ++ SW MI+ + N + D F + G +
Sbjct: 281 LVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPN 340
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
T VLS CAH G ++ G R+L S+ V K+ E L + + + LA +G
Sbjct: 341 DATFVGVLSCCAHAGLVERG-------RNLFTSMTVDHKM-EPKLEHFGCMVDLLARNGC 392
Query: 292 AHEALGMFDRMTYENVRPN 310
EA + M +RPN
Sbjct: 393 MEEARDLVRTMP---MRPN 408
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +G + + A+VD Y + ++ R FD MP + +W +M+ A A
Sbjct: 231 VHCHMLASGSRVDLILGNALVDMYGKCGDLW----MAHRCFDVMPIKNVVSWTSMLCALA 286
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A F +MP +I SW MI+ Y Q +F E L +N+ K G D+VT+A
Sbjct: 287 KHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAG 346
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
VLS G L GR I Y C + S+ +F ++ KN
Sbjct: 347 VLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKN 406
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN I ALA+HG A EA+ F M + P+
Sbjct: 407 TISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPD 441
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 83/327 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTIL----VFPQMQE 88
L++C SI+ L+ ++A ++ + + Q + S+C D + +F ++ +
Sbjct: 10 LQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPD 69
Query: 89 PNVFVYH----AFSSLRHPLQAIAFYLYMLR----------------------AEVLLTT 122
P+ F Y+ A+S+ P +A+ + +LR AE L T
Sbjct: 70 PDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALAT 129
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
HG K G+ VFV A++ +S+ S R SRRLF EM
Sbjct: 130 -HGVAIKLGYVRQVFVGNALL----HSSASAGSLRDSRRLFAEMA--------------- 169
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
P ++ SW TMI +Q + EA F + ++ G +D T ++L C
Sbjct: 170 ----------PHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVC 219
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
+ G L++GR + + C L + F + KN++ W
Sbjct: 220 SKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWT 279
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
S+ ALA HG A F++M N+
Sbjct: 280 SMLCALAKHGSVDAARDWFEQMPERNI 306
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 83 FPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLR-AEVLLTTVHGQVWKNGFSSPVFVQTA 141
F QM E N+ ++A I+ Y+ R E L ++ ++ G +
Sbjct: 298 FEQMPERNIISWNAM---------ISCYVQGGRFPETL--GLYNRMKSLGLTPDEVTLAG 346
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
++ + + R + + D + N++ID YAR ++ LF +MP +
Sbjct: 347 VLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKN 406
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
SW +I + + + + +EA+ F D++T +LSAC+H G L+ G+
Sbjct: 407 TISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQ 462
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 86/273 (31%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------- 158
H V K G + FV A++D YS + ++++V
Sbjct: 224 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 283
Query: 159 --SRRLFDEMPERKFATWNTMIDAYAR--------------------------------- 183
+R +FDEMPE+ +WNTM+D YA+
Sbjct: 284 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 343
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+A ++F+KMPA ++ +WT M+++ +Q EA F + + D + + ++L+
Sbjct: 344 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILA 403
Query: 241 ACAHLGALDLGRGIQIYCRS--LGRSLLVFFKLR---------------------EKNLL 277
ACA G+L LG+ I + R L RS LV L EK+L+
Sbjct: 404 ACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLV 463
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN I A+HG +AL +F +M + P+
Sbjct: 464 SWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 496
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 29/174 (16%)
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMPAWDIRSWTT 202
S +R+ R + R N ++D + + A+ +F+ ++ D+ SW
Sbjct: 408 SGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNI 467
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG 262
+I ++ + +AL+ F + K+ G D VT+ VLSAC H+G ++ GR
Sbjct: 468 IIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGR---------- 517
Query: 263 RSLLVFFKLREKN------LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
FF E + + + + + L G EA+ M RM +E PN
Sbjct: 518 ----RFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWE---PN 564
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 38/221 (17%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q+ G FV+T++++ YS R ++R+FD+ + WN++++AYA+
Sbjct: 85 HAQILLFGLDKDPFVRTSLLNMYSSCGDL----RSAQRVFDDSGSKDLPAWNSVVNAYAK 140
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN-----KTKKSGTGSDQV 233
A LF++MP ++ SW+ +I Y +++EALD F K ++ ++
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM+TVLSAC LGAL+ G+ + Y C SL R+ VF L
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTY-ENVRPN 310
+K++ ++++ LA++G E +F MT +N+ PN
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPN 301
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 143/336 (42%), Gaps = 88/336 (26%)
Query: 30 IANQLKKC-----SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILV 82
+ ++LKKC S+ + + + +++ + D +L + S HF Y +V
Sbjct: 1 MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLR---SSLHFAATQYATVV 57
Query: 83 FPQMQEPNVFVYH-----------------AFSSLR-HPLQAIAF-YLYMLRAEVLLT-- 121
F Q PN+F+Y+ ++S+R H F + ++L+A L
Sbjct: 58 FAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHY 117
Query: 122 -----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
++H V K GF VFV+T +V YS N F +R++FDE+PE+
Sbjct: 118 FHVGLSLHSLVIKTGFDWDVFVKTGLVCLYS-KNGFLTD---ARKVFDEIPEK------- 166
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
++ SWT +I Y ++ F EAL F + G D T+
Sbjct: 167 -------------------NVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLV 207
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
+L AC+ +G L GR I Y C S+ + VF + EK
Sbjct: 208 RILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEK 267
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++CW+++ + A +G EAL +F M ENVRP+
Sbjct: 268 DVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPD 303
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+ G + ++G VFV T++VD Y+ E+RRV FD M E+
Sbjct: 225 IDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRV----FDGMVEK------------- 267
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ W+ +I Y+ N +EALD F + ++ D M V SAC
Sbjct: 268 -------------DVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314
Query: 243 AHLGALDLG---RG-----------------IQIY--CRSLGRSLLVFFKLREKNLLCWN 280
+ LGAL+LG RG I Y C S+ ++ VF +R K+ + +N
Sbjct: 315 SRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFN 374
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ LA+ G A G+F +M ++P+G
Sbjct: 375 AVISGLAMCGHVGAAFGVFGQMVKVGMQPDG 405
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R T TMID YA+L A+ LF++MP
Sbjct: 249 NSMIDGYVKHGRIEDAKG----LFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPL 304
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ FN K+S D+ T+ +LSA A LG L
Sbjct: 305 RDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATD 364
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LA+HG
Sbjct: 365 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGL 424
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ ++ P+
Sbjct: 425 GESAFNMLLQIERLSIIPD 443
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 99/319 (31%)
Query: 34 LKKCSSIKELECVYATIVKT----NANLDCFLAKQFISFCTSRFHFI---------DYTI 80
L C + ++ ++ ++KT N+NL + ++F SR ++ +Y +
Sbjct: 12 LGSCKTSYDVNKIHGGLIKTGIIKNSNLT---TRIVLAFAASRRPYLAEFARCVFHEYHV 68
Query: 81 LVFP--QMQEPNVF--VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
F +M++P ++ V + S + P QA+ + ML V +
Sbjct: 69 CSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLG 128
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N
Sbjct: 129 FVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCL----GFARQMFDRMPQRDSVSYN 184
Query: 176 TMIDAYARL-----AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+MI+ Y + A LF+ MP ++ SW +MI+ Y+Q
Sbjct: 185 SMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQT------------------ 226
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
S+ V +A+ L F ++ EK+L+ WNS+ +
Sbjct: 227 -SEGVNIASKL----------------------------FAEMPEKDLISWNSMIDGYVK 257
Query: 289 HGFAHEALGMFDRMTYENV 307
HG +A G+FD M +V
Sbjct: 258 HGRIEDAKGLFDVMPRRDV 276
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R T TMID YA+L A+ LF++MP
Sbjct: 51 NSMIDGYVKHGRIEDAKG----LFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPL 106
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ FN K+S D+ T+ +LSA A LG L
Sbjct: 107 RDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATD 166
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LA+HG
Sbjct: 167 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGL 226
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ ++ P+
Sbjct: 227 GESAFNMLLQIERLSIIPD 245
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 62/289 (21%)
Query: 79 TILVFPQMQEPNV--------FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV------- 123
T+ ++ +M++ V FV A S L A + ++R LL
Sbjct: 96 TVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALIL 155
Query: 124 -HGQVWKNGFSSPVFVQTA---------MVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
H G +S +F +A M Y+ K E+ R LFDEMP++
Sbjct: 156 FHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMR----LFDEMPDKDQVA 211
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN MI + E+ LF++ D+ +W MI+ Y +EAL F + + +G
Sbjct: 212 WNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGE 271
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY---------------------------CRSL 261
D VT+ ++LSACA LG L+ G+ + IY C S+
Sbjct: 272 HPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSI 331
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R++ VF +++++L WN++ LA+H A ++ MF+ M V PN
Sbjct: 332 DRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPN 379
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
E+ VS ++ P WN +ID YA+ + +F M D+ +W T+I
Sbjct: 301 ILETASVSSSIYVGTP-----IWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVG 355
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + +++ F + ++ ++VT V+ AC+H G +D GR
Sbjct: 356 LALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 400
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 31/221 (14%)
Query: 118 VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+L +VH +++G ++ VQ+ V Y+ R F E+ M
Sbjct: 141 LLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAA----FAEIVSPDVVCVTAM 196
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ A + ++ LF+ MP D +W M+T Y + + REAL F++ +K+G +
Sbjct: 197 LGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSE 256
Query: 233 VTMATVLSACAHLGALDLG---------RGIQIY-------------CRSLGRSLLVFFK 270
VT+ +VL+ACA +GAL+ G RG+++ C + S+ VF
Sbjct: 257 VTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFET 316
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+RE+N+ W S LA++G E L +F RM + PNG
Sbjct: 317 MRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNG 357
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R T TMID YA+L A+ LF++MP
Sbjct: 55 NSMIDGYVKHGRIEDAKG----LFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPL 110
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ FN K+S D+ T+ +LSA A LG L
Sbjct: 111 RDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATD 170
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LA+HG
Sbjct: 171 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGL 230
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ ++ P+
Sbjct: 231 GESAFNMLLQIERLSIIPD 249
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 146/323 (45%), Gaps = 61/323 (18%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--- 96
I +L+ +++ I+ + +L L ++ ++ IDY +F Q+ +P +Y++
Sbjct: 15 INQLKQIHSLIIIKHPSLATVLVRKLLNLSD-----IDYARQLFDQVPQPGQILYNSLIS 69
Query: 97 -FSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNGFSS 134
+S L A+ + M ++ L+ VH + G
Sbjct: 70 TYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDC 129
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LF 189
V+VQT+++D Y+ + +R++ FD + + ++N +I Y++ ++ LF
Sbjct: 130 NVYVQTSLMDFYAKIGELGSARKI----FDGILVKDPISYNCLITGYSKAGDVIAARRLF 185
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
+ M + SW MI+ Y+ N E L F + + +++T+ T+LS CA LG L+
Sbjct: 186 DSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLE 245
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+G I+ Y C ++ + F ++ +++++ W+++ A
Sbjct: 246 MGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYA 305
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G ++EAL +F+ M E V+PN
Sbjct: 306 QNGRSNEALELFECMRREKVKPN 328
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F++M DI +W+ MI Y+QN + EAL+ F ++ + VT+ +VLSAC LG++
Sbjct: 286 FDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSACVQLGSV 345
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
++G I Y C ++ ++ VF K +K+++ WNS+ L
Sbjct: 346 EMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQKDIVTWNSMIVGL 405
Query: 287 AIHGFAHEALGMFDRM 302
A++GFA +A+ ++ M
Sbjct: 406 AVNGFAKDAIALYRNM 421
>gi|297844350|ref|XP_002890056.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
lyrata]
gi|297335898|gb|EFH66315.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK-FATWNTMIDAYARLAEL-----LFN 190
FV+TA++D ++ +RR+ F+E+ +K TWN MI Y R+ ++ LF+
Sbjct: 302 FVKTALLDMHAKCRDILSARRI----FNELGTQKNLVTWNAMISGYTRIGDMSSARQLFD 357
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249
MP ++ SW ++I Y+ N Q A++ F G + D+VTM +VLSAC H+G L+
Sbjct: 358 TMPKRNVVSWNSVIAGYAHNGQPALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMGDLE 417
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG I Y C +L + VF +++E++++ +N++ A A
Sbjct: 418 LGDCIVDYIGKKQIKLNDSGYRSLIFMYARCGNLWEAKRVFDEMKERDVVSYNTLFSAFA 477
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G + L + +M E + P+
Sbjct: 478 ANGDGVKTLNLLSKMKDEGIEPD 500
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 130/344 (37%), Gaps = 78/344 (22%)
Query: 42 ELECVYATIVKTNA-NLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA---- 96
+L ++A ++ +N+ + + A + IS CT Y LVF + PNVF+ ++
Sbjct: 21 QLNQIHAHLIVSNSLHRQSYWASRLISCCTRLRAPPYYARLVFDSVTFPNVFLVNSMFRY 80
Query: 97 FSSLRHPLQAIAFYLYMLRAEVLLTTV----------------HGQVWKNGFSSPVFVQT 140
FS + A+ Y R ++ T V K G +V+
Sbjct: 81 FSQMDMANDALRLYEQRSRCGIMPDTFFFPVVIKSAGKFGVLFQALVEKMGIFKDPYVRN 140
Query: 141 AMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPERKF-- 171
++D Y+ +R+V + +LFD MPE K
Sbjct: 141 VIMDMYAKHESVESARKVFDQITHRKGSDWNVMISGYWKYGNKEEACKLFDMMPEGKIDV 200
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+W MI +A+L +L F+ MP + SW M++ YSQN E L FN +
Sbjct: 201 VSWTVMITGFAKLKDLENARRCFDCMPEKSVVSWNAMLSGYSQNGFTEETLRLFNDMLRL 260
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI----------------------QIYCRSLGRS 264
G ++ T V+SAC+ L + CR + +
Sbjct: 261 GVRPNETTWVIVISACSFRADPSLAHSLVKLIGEKRIRLNFFVKTALLDMHAKCRDILSA 320
Query: 265 LLVFFKL-REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+F +L +KNL+ WN++ G A +FD M NV
Sbjct: 321 RRIFNELGTQKNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNV 364
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+ + ++I YAR L +F++M D+ S+ T+ ++++ N + L+ +K K
Sbjct: 436 SGYRSLIFMYARCGNLWEAKRVFDEMKERDVVSYNTLFSAFAANGDGVKTLNLLSKMKDE 495
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI 254
G D+VT +VL+AC G L+ G+ I
Sbjct: 496 GIEPDRVTYTSVLTACNRAGLLEEGQRI 523
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLAELLFN 190
V T +V Y + +R +FD MP R W++M+ Y A A+ +F+
Sbjct: 186 VVTWTVLVHGYVSAGDM----EAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFH 241
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P ++ +W +I Y+Q +AL+AF+ + D+ TMA++LSACA LG+L+
Sbjct: 242 RIPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQ 301
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + + C L + +F +R KN CWN++ ALA
Sbjct: 302 GKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALAS 361
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG + EAL +F +M + PN
Sbjct: 362 HGRSDEALHLFFQMEHSGQTPN 383
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++H + K+ F+ + V T +V Y ++RR FDEMP+R ++N ++
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRA----FDEMPDRNVISYNALL 129
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YA ++ LF M +W +W T+I +++ EA F T G V
Sbjct: 130 AGYAAAGDMDGALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWFETTPP---GMRTV 186
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLL--------------------VFFKLRE 273
TVL ++ A D+ +++ R R+ VF ++
Sbjct: 187 VTWTVL-VHGYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPT 245
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL+ WN++ A G + +AL FD M E V+P+
Sbjct: 246 RNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPD 282
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ +L +F+ M + W TMI++ + + + EAL F + + SG
Sbjct: 322 NGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHGRSDEALHLFFQMEHSGQT 381
Query: 230 SDQVTMATVLSACAHLGALDLG-------------RGIQIY---CRSLGRS-------LL 266
+ +T+ VL AC H G +D G G++ Y LGR+ +
Sbjct: 382 PNTITVLAVLGACTHGGFVDEGLRIFNKLDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEI 441
Query: 267 VFFKLREKNLLCWNSITEALAIHGFA 292
V E N + W S+ A +HG A
Sbjct: 442 VKNMPEEPNEVIWGSLLGACRVHGDA 467
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 27/168 (16%)
Query: 170 KFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
K N ++D Y + LA +F+++ D+ SWT MI+ Q K +AL+ FN+ +
Sbjct: 245 KLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQ 304
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLG 262
KS D+V ++TVLSAC LGAL+ GR + Y C L
Sbjct: 305 KSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLE 364
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
SL +F K+ KNL WN++ A+HG EAL FDRM + PN
Sbjct: 365 TSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPN 412
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 159 SRRLFDEMPERKFATWN-----TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
S R E ERK W+ +++D YA+ L +F KMP ++ SW +I ++
Sbjct: 330 SGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFA 389
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF 268
+ REAL+ F++ SG ++V+ VL AC H G + G+Q++ S+
Sbjct: 390 LHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQ--EGLQLF-----ESMKNS 442
Query: 269 FKLR--EKNLLCWNSITEALAIHGFAHEA 295
+KL E++ + S+ + L G HEA
Sbjct: 443 YKLSPWEEH---YGSVVDLLGRAGLIHEA 468
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 55/210 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH K GF + V+ A+V Y + ++RRV FDEM R
Sbjct: 135 VHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRV----FDEMASR------------- 177
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SWT +++++ + +F EAL + ++ T+A VL AC
Sbjct: 178 -------------DVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVAC 221
Query: 243 AHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWN 280
LGA G+ + + C L + VF +L ++++ W
Sbjct: 222 GRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWT 281
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L +AL +F+ M V+P+
Sbjct: 282 IMISGLVQCKLPSKALEVFNEMQKSRVKPD 311
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 113/277 (40%), Gaps = 86/277 (31%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------- 158
+ VH V K G FV A++D YS + F ++R+V
Sbjct: 454 VRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVR 513
Query: 159 ------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
R+LFDEMPE+ +WNT++D Y + E+ LF +MP ++ SW+TM++ Y
Sbjct: 514 EGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGY 573
Query: 208 -------------------------------SQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+Q EA F + K++ D +
Sbjct: 574 CKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVV 633
Query: 237 TVLSACAHLGALDLGRGIQIYC--RSLGRSLLVFFKL---------------------RE 273
++L+ACA G+L LG+ I Y R+LGRS V L +
Sbjct: 634 SILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQ 693
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ + WNSI A+HG +AL +F +M + P+
Sbjct: 694 KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 730
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D SW ++I ++ + +AL+ F + K+ G D VTM VLSAC H+G +D GR
Sbjct: 695 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 751
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 86/273 (31%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------- 158
H V K G + FV A++D YS + ++++V
Sbjct: 152 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 211
Query: 159 --SRRLFDEMPERKFATWNTMIDAYAR--------------------------------- 183
+R +FDEMPE+ +WNTM+D YA+
Sbjct: 212 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 271
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+A ++F+KMPA ++ +WT M+++ +Q EA F + + D + + ++L+
Sbjct: 272 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILA 331
Query: 241 ACAHLGALDLGRGIQIYCRS--LGRSLLVFFKLR---------------------EKNLL 277
ACA G+L LG+ I + R L RS LV L EK+L+
Sbjct: 332 ACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLV 391
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN I A+HG +AL +F +M + P+
Sbjct: 392 SWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 424
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 29/168 (17%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMPAWDIRSWTTMITSYS 208
+R+ R + R N ++D + + A+ +F+ ++ D+ SW +I ++
Sbjct: 342 GKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFA 401
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF 268
+ +AL+ F + K+ G D VT+ VLSAC H+G ++ GR F
Sbjct: 402 MHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGR--------------RF 447
Query: 269 FKLREKN------LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F E + + + + + L G EA+ M RM +E PN
Sbjct: 448 FANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWE---PN 492
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLAELLFN 190
V T +V Y + +R +FD MP R W++M+ Y A A +F+
Sbjct: 186 VVTWTVLVQGYVCAGDM----ETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFD 241
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P ++ +W +I Y+Q +AL+AF+ + D+ TMA++LSACA LG+L+
Sbjct: 242 RIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQ 301
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + + C L + +F +R KN CWN++ ALA
Sbjct: 302 GKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALAS 361
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG + EAL +F +M +PN
Sbjct: 362 HGQSDEALHLFFQMERSGRKPN 383
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++H + K+ F+ + V T +V Y ++RR FDEMP+R ++N ++
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRA----FDEMPDRNVISYNALL 129
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YA ++ LF M +W +W T+I +++ EA F T G V
Sbjct: 130 AGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATP---PGMRTV 186
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLL--------------------VFFKLRE 273
TVL ++ A D+ +++ R R+ VF ++
Sbjct: 187 VTWTVLVQ-GYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL+ WN++ A G + +AL F M E V+P+
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPD 282
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ +L +F+ M + W TMI++ + + Q EAL F + ++SG
Sbjct: 322 NGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRK 381
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
+ +T+ VL AC H G +D G+QI+
Sbjct: 382 PNTITVLAVLGACTHGGFVD--EGLQIF 407
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 32/228 (14%)
Query: 111 LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L LRA +HG V K G VF+ ++++D Y K + R V FD + E+
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV----FDLILEKN 381
Query: 171 FATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
WN+M+ Y+ E LF +P + SW T+I Y +N+Q + L+ FN
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR---------GIQ-------------IYCRSLGR 263
SG ++ T ++VL ACA + +LD G GIQ C +G
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT-YENVRPN 310
S VF ++ EKN + W + + LA GFA E+L +F+ M V PN
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 35/201 (17%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++ G V K GF + V +++ + S + E ++RR+FD M +R +W ++
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLI---TLSLRMGEID-LARRVFDRMEKRDVVSWTAIL 257
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
DAY +L +F++MP + SW+ MI YSQ+ EAL F+K + G +
Sbjct: 258 DAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNIS 317
Query: 234 TMATVLSACAHLGALDLGRGIQ--------------------IYCR----SLGRSLLVFF 269
A LSA A L AL G I +YC+ GR LVF
Sbjct: 318 CFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR--LVFD 375
Query: 270 KLREKNLLCWNSITEALAIHG 290
+ EKN++CWNS+ +I+G
Sbjct: 376 LILEKNVVCWNSMVGGYSING 396
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 39/244 (15%)
Query: 92 FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
+ FSS R+ IA L +L Q+ K S + V M+ Y
Sbjct: 47 LIKTGFSSQRY----IAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN 102
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDA---YARLAELL--FNKMPAWDIRSWTTMITS 206
++R LFDEMPER +W+ +I Y R+ E + F + P ++ SWT I+
Sbjct: 103 LVQARL----LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISG 158
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI---------- 256
+ +N EAL F + +SG + VT +V+ AC LG D G G+ I
Sbjct: 159 FVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELG--DFGLGMSILGLVVKAGFE 216
Query: 257 YCRSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ S+ SL+ VF ++ +++++ W +I +A G EA +FD M
Sbjct: 217 HYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM 276
Query: 303 TYEN 306
N
Sbjct: 277 PERN 280
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 31/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG++ K G +FV TA+ D Y+ S++V F+ MPE+
Sbjct: 470 VHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV----FERMPEK------------- 512
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSA 241
N++ SWT MI +++ E+L F + ++ S +++ + +VL A
Sbjct: 513 -------NEI------SWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFA 559
Query: 242 CAHLGALDLG 251
C+H G +D G
Sbjct: 560 CSHCGLVDKG 569
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 59/330 (17%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+C S+ L ++A +VK+ D A + ++FC + Y + PN F+++
Sbjct: 43 RCVSMAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVLYAERLVRHHPRPNSFMWN 102
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEV---------LLTT------------VHGQVWKN 130
A S P A+A ++ ML + LL +HG K
Sbjct: 103 TVIRALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKL 162
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
G + +V+ A + Y+ + E+ LF + PE N++I A AR +
Sbjct: 163 GLAGDAYVRNATIAMYASCGRADEALA----LFGQCPELDVVACNSVIVALARAGRVDEA 218
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
+F+ MP + +W+ M+++Y++ + EAL F+ + G + + +VL CA L
Sbjct: 219 RSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASL 278
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL---CWN 280
GAL G + Y C S+ + VF R + L WN
Sbjct: 279 GALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWN 338
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ + LA+HG EA+ +F + + P+
Sbjct: 339 SMMQGLAVHGQWREAVALFSELKSYGLSPD 368
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 27/127 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + ++G + V TA+VD Y ++R+V FD + A
Sbjct: 287 VHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQV----FDAARSQGLAK--------- 333
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ SW +M+ + + Q+REA+ F++ K G D VT VL+A
Sbjct: 334 --------------LSSWNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAY 379
Query: 243 AHLGALD 249
H G D
Sbjct: 380 GHSGMPD 386
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 86/274 (31%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------------------------ 158
VH V K G FV A++D YS + F ++R+V
Sbjct: 150 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 209
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYAR-------------------------------- 183
R+LFDEMPE+ +WNT++D Y +
Sbjct: 210 LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKK 269
Query: 184 ----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+A ++F+KMP+ ++ +WT M+++ +Q EA F + K++ D + ++L
Sbjct: 270 GDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSIL 329
Query: 240 SACAHLGALDLGRGIQIYC--RSLGRSLLVFFKL---------------------REKNL 276
+ACA G+L LG+ I Y R+LGRS V L +K+
Sbjct: 330 AACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDS 389
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WNSI A+HG +AL +F +M + P+
Sbjct: 390 VSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 423
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D SW ++I ++ + +AL+ F + K+ G D VTM VLSAC H+G +D GR
Sbjct: 388 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 444
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 27/164 (16%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++D Y + LA LFNKMP ++ W MI + ++ + EAL FN+ + SG
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D+VTMA++L AC HLGAL+LG+ + +Y C S+ ++ V
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F ++ EK+++ W ++ LA+ G +AL +F M V+P+
Sbjct: 397 FQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 440
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 139/333 (41%), Gaps = 79/333 (23%)
Query: 23 SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTIL 81
S I++H L+KC+++ +L+ ++A +++T +D F A + ++FC + Y L
Sbjct: 36 SQIQLHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARL 95
Query: 82 VFPQMQEPNVF----VYHAFSSLRHPLQAIAFY-LYMLRA---------------EVLLT 121
VF Q+ P F + +++ P QAI FY L ML+ VL
Sbjct: 96 VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE 155
Query: 122 --TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H K GF+S ++Q +++ YS +R+V FD+M + +W TMI
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKV----FDKMVNKSVVSWATMIG 211
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
AYA+ WD+ EA+ F + + + +++T+ VL
Sbjct: 212 AYAQ-----------WDLP---------------HEAIKLFRRMEIASVKPNEITLVNVL 245
Query: 240 SACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKN 275
+ACA L+ + + Y C L R L F K+ EKN
Sbjct: 246 TACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDL--FNKMPEKN 303
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
L CWN + EAL +F+ M V+
Sbjct: 304 LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E A ++D YA+ + +F +MP D+ +WT +I + Q +AL+ F++
Sbjct: 371 EVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHE 430
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLG 251
+ S D +T VL+AC+H G ++ G
Sbjct: 431 MQMSEVKPDAITFVGVLAACSHAGLVNEG 459
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA- 243
A L+FN++P + ++I Y+ R+A+ + G D+ T ++ +C
Sbjct: 93 ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV 152
Query: 244 -------HLGALDLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
H + LG Y C L + VF K+ K+++ W ++ A
Sbjct: 153 LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 212
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
A HEA+ +F RM +V+PN
Sbjct: 213 YAQWDLPHEAIKLFRRMEIASVKPN 237
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +G VFV T ++ Y + +SRRLFD MP R +WN M+ Y
Sbjct: 144 VHAIIVTSGIVPDVFVSTELIRVYGEYGELA----LSRRLFDAMPVRSTVSWNAMVHQYI 199
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG---SDQVT 234
R + + LF MP D+ SW TMI YS +F EAL+ + + + T
Sbjct: 200 RHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPT 259
Query: 235 MATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLR 272
M+TVL+ACA G L+ G + + C S+ ++L VF K
Sbjct: 260 MSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAP 319
Query: 273 E-KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
E ++L W ++ LA+HG A +AL MF M + P+
Sbjct: 320 EARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPD 358
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 176 TMIDAYARLAEL-----LFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ID Y + + +F K P A D+ SWTTMI + + + +AL F + +G
Sbjct: 297 SLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIH 356
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT+ VL+ACAH G +D G
Sbjct: 357 PDDVTLVGVLNACAHCGLVDEG 378
>gi|15223763|ref|NP_172899.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806395|sp|Q9M9R6.2|PPR43_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g14470
gi|332191047|gb|AEE29168.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 540
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAYARLAEL-----LFN 190
FV+TA++D ++ + +RR+F+E+ +R TWN MI Y R+ ++ LF+
Sbjct: 300 FVKTALLDMHAKCRDI----QSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFD 355
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249
MP ++ SW ++I Y+ N Q A++ F G + D+VTM +VLSAC H+ L+
Sbjct: 356 TMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLE 415
Query: 250 LGRGIQIYCR--------SLGRSLL--------------VFFKLREKNLLCWNSITEALA 287
LG I Y R S RSL+ VF +++E++++ +N++ A A
Sbjct: 416 LGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFA 475
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G E L + +M E + P+
Sbjct: 476 ANGDGVETLNLLSKMKDEGIEPD 498
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 121/323 (37%), Gaps = 75/323 (23%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR 115
+ A + IS CT YT L+F + PNVFV ++ FS + + Y R
Sbjct: 40 YWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSR 99
Query: 116 AEVLLTTV----------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV- 158
++ V K GF +V+ ++D Y +R+V
Sbjct: 100 CGIMPDAFSFPVVIKSAGRFGILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVF 159
Query: 159 ---SRR-----------------------LFDEMPERKFATWNTMIDAYARLAEL----- 187
S+R LFD MPE +W MI +A++ +L
Sbjct: 160 DQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARK 219
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
F++MP + SW M++ Y+QN +AL FN + G ++ T V+SAC+
Sbjct: 220 YFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRAD 279
Query: 248 LDLGRGI----------------------QIYCRSLGRSLLVFFKL-REKNLLCWNSITE 284
L R + CR + + +F +L ++NL+ WN++
Sbjct: 280 PSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMIS 339
Query: 285 ALAIHGFAHEALGMFDRMTYENV 307
G A +FD M NV
Sbjct: 340 GYTRIGDMSSARQLFDTMPKRNV 362
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+ + ++I YAR L +F++M D+ S+ T+ T+++ N E L+ +K K
Sbjct: 434 SGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDE 493
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI 254
G D+VT +VL+AC G L G+ I
Sbjct: 494 GIEPDRVTYTSVLTACNRAGLLKEGQRI 521
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLAELLFN 190
V T +V Y + +R +FD MP R W++M+ Y A A +F+
Sbjct: 186 VVTWTVLVQGYVCAGDM----ETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFD 241
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P ++ +W +I Y+Q +AL+AF+ + D+ TMA++LSACA LG+L+
Sbjct: 242 RIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQ 301
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G+ + + C L + +F +R KN CWN++ ALA
Sbjct: 302 GKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALAS 361
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG + EAL +F +M +PN
Sbjct: 362 HGQSDEALHLFFQMERSGRKPN 383
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++H + K+ F+ + V T +V Y ++RR FDEMP+R ++N ++
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRA----FDEMPDRNVISYNALL 129
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YA ++ LF M +W +W T+I +++ EA F T G V
Sbjct: 130 AGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPP---GMRTV 186
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLL--------------------VFFKLRE 273
TVL ++ A D+ +++ R R+ VF ++
Sbjct: 187 VTWTVLVQ-GYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+NL+ WN++ A G + +AL F M E V+P+
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPD 282
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ +L +F+ M + W TMI++ + + Q EAL F + ++SG
Sbjct: 322 NGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRK 381
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY 257
+ +T+ VL AC H G +D G+QI+
Sbjct: 382 PNTITVLAVLGACTHGGFVD--EGLQIF 407
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 135/304 (44%), Gaps = 53/304 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
L++CS+++EL ++ ++KT LD A + ++FC S + Y VF ++ PN F
Sbjct: 25 LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTF 84
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
+++ +S+ + P +A+ Y +ML + V N ++ P ++ S
Sbjct: 85 MWNTMIRGYSNSKEPEEALLLYHHML---------YHSVPHNAYTFPFLLKAC-----SS 130
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYS 208
+ E++++ + + T N++++ Y++ + DI+S +
Sbjct: 131 MSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSK----------SGDIKSARLLFDQVD 180
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------- 257
Q EAL+ F++ + +G D V + + L ACA LG LD G+ I Y
Sbjct: 181 QRDT--EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 238
Query: 258 -----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
C L ++ VF K+ EK + W ++ AIHG EAL F +M
Sbjct: 239 LGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAG 298
Query: 307 VRPN 310
V PN
Sbjct: 299 VEPN 302
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 146/310 (47%), Gaps = 48/310 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR--FHFIDYTILVFPQMQEPNV 91
+ KC+S++EL + A +K++ F+AK I+FCT + Y +F M EP++
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEAMSEPDI 94
Query: 92 FVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS 147
++++ +S +PL+ + ++ +L +L + ++ P ++ V
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILEDGIL---------PDNYTFPSLLKACAV---- 141
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTT 202
+ E R++ + T+I+ Y A +F+++ + +
Sbjct: 142 -AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNA 200
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----- 257
MIT Y++ + EAL F + + +++T+ +VLS+CA LG+LDLG+ I Y
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260
Query: 258 -----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
C SL ++ +F K+R K+ W+++ A A HG A +++ MF+
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320
Query: 301 RMTYENVRPN 310
RM ENV+P+
Sbjct: 321 RMRSENVQPD 330
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 35/235 (14%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ K LE ++ +K + + ++ I+ T +D VF ++ EP
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYT-ECEDVDSARXVFDRIVEPC 194
Query: 91 VFVYHA----FSSLRHPLQAIAFYL-----YMLRAEVLLTTVHGQVWKNGFSSPVFVQT- 140
V Y+A ++ P +A++ + Y+ E+ L +V SS + +
Sbjct: 195 VVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSV--------LSSCALLGSL 246
Query: 141 ---AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+ Y+ + F + +V+ L D FA ++ DA + +F KM D
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALID-----MFAKCGSLDDAVS-----IFEKMRYKDT 296
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++W+ MI +Y+ + + +++ F + + D++T +L+AC+H G ++ GR
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + +G VFV T ++ Y + +SRRLFD MP R +WN M+ Y
Sbjct: 72 VHAIIVTSGIVPDVFVSTELIRVYGEYGELA----LSRRLFDAMPVRSTVSWNAMVHQYI 127
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG---SDQVT 234
R + + LF MP D+ SW TMI YS +F EAL+ + + + T
Sbjct: 128 RHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPT 187
Query: 235 MATVLSACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLR 272
M+TVL+ACA G L+ G + + C S+ ++L VF K
Sbjct: 188 MSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAP 247
Query: 273 E-KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
E ++L W ++ LA+HG A +AL MF M + P+
Sbjct: 248 EARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPD 286
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 176 TMIDAYARLAEL-----LFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ID Y + + +F K P A D+ SWTTMI + + + +AL F + +G
Sbjct: 225 SLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIH 284
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT+ VL+ACAH G +D G
Sbjct: 285 PDDVTLVGVLNACAHCGLVDEG 306
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 146/310 (47%), Gaps = 48/310 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR--FHFIDYTILVFPQMQEPNV 91
+ KC+S++EL + A +K++ F+AK I+FCT + Y +F M EP++
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEAMSEPDI 94
Query: 92 FVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS 147
++++ +S +PL+ + ++ +L +L + ++ P ++ V
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILEDGIL---------PDNYTFPSLLKACAV---- 141
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTT 202
+ E R++ + T+I+ Y A +F+++ + +
Sbjct: 142 -AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 200
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----- 257
MIT Y++ + EAL F + + +++T+ +VLS+CA LG+LDLG+ I Y
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260
Query: 258 -----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
C SL ++ +F K+R K+ W+++ A A HG A +++ MF+
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320
Query: 301 RMTYENVRPN 310
RM ENV+P+
Sbjct: 321 RMRSENVQPD 330
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 35/235 (14%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ K LE ++ +K + + ++ I+ T +D VF ++ EP
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYT-ECEDVDSARCVFDRIVEPC 194
Query: 91 VFVYHA----FSSLRHPLQAIAFYL-----YMLRAEVLLTTVHGQVWKNGFSSPVFVQT- 140
V Y+A ++ P +A++ + Y+ E+ L +V SS + +
Sbjct: 195 VVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSV--------LSSCALLGSL 246
Query: 141 ---AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+ Y+ + F + +V+ L D FA ++ DA + +F KM D
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALID-----MFAKCGSLDDAVS-----IFEKMRYKDT 296
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++W+ MI +Y+ + + +++ F + + D++T +L+AC+H G ++ GR
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ F+++PE+ W+ M+ Y R+ ++ +F ++ A D+ W T+I Y+QN
Sbjct: 196 ARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYS 255
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQI-------- 256
+A+DAF + G D VT++++LSACA G LD+G RGI++
Sbjct: 256 DDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNAL 315
Query: 257 -----YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + VF + +++ C NS+ LAIHG EAL MF M +++P+
Sbjct: 316 IDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPD 374
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 60/232 (25%)
Query: 118 VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VL +H + K G S V V ++++ Y +R+V FDEMPER ATWN M
Sbjct: 63 VLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKV----FDEMPERNVATWNAM 118
Query: 178 IDAYA-------------------------------------RLAELLFNKMP--AWDIR 198
I Y A LF +MP +++
Sbjct: 119 IGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVK 178
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
+W+ M+ Y N++ +A F + + + ++S +G + R I
Sbjct: 179 AWSVMLGVYVNNRKMEDARKFFEDIPE----KNAFVWSLMMSGYFRIGDVHEARAI---- 230
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F+++ ++L+ WN++ A +G++ +A+ F M E P+
Sbjct: 231 ---------FYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPD 273
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 28/196 (14%)
Query: 83 FPQMQEPNVFVYHAFSSLR------HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV 136
F + E N FV+ S H +AI FY R V+ T+ +NG+S
Sbjct: 200 FEDIPEKNAFVWSLMMSGYFRIGDVHEARAI-FYRVFARDLVIWNTLIAGYAQNGYSDDA 258
Query: 137 F----------------VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++++ + S + R V + E N +ID
Sbjct: 259 IDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDM 318
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
YA+ +L +F + + +MI+ + + + +EAL+ F+ + D++T
Sbjct: 319 YAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITF 378
Query: 236 ATVLSACAHLGALDLG 251
VL+AC H G L G
Sbjct: 379 IAVLTACVHGGFLMEG 394
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 36/202 (17%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEM--PERKFATWNTMIDAYARLAEL-----LFNKM 192
AM+ Y+ N E + RLFDEM R TWN MI AY R+ +L LFN M
Sbjct: 140 NAMLSGYA-QNGLAEE---ALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTM 195
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGTGSDQVTMATVLSACAHLGALDL 250
P ++ +W +MI Y+QN Q A++ F + T K T D+VTM +V+SAC HLGAL+L
Sbjct: 196 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT-PDEVTMVSVISACGHLGALEL 254
Query: 251 GRGI-------QIY---------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G + QI C S+ + VF ++ ++++ +N++ A
Sbjct: 255 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 314
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG EA+ + M + P+
Sbjct: 315 HGHGVEAINLMSTMKEGGIEPD 336
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 52/259 (20%)
Query: 74 HFIDYT--ILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
H D+ +L++ QMQ P+ FVY I F H V
Sbjct: 7 HLQDHAKVVLMYEQMQGCGVRPDAFVYPILIK-SAGTGGIGF--------------HAHV 51
Query: 128 WKNGFSSPVFVQTAMVDNYSYS----NKF------FESRRVSRRLFDEMPERKFATWNTM 177
K G S FV+ A++D Y+ N +ES ++ LFD MPER TW M
Sbjct: 52 LKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAM 111
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+ YA++ +L F+ MP + SW M++ Y+QN EAL F++ G +
Sbjct: 112 VTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM--LGAYRNS 169
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
VT ++SA +G LD R + F + +N++ WNS+ A +G +
Sbjct: 170 VTWNAMISAYMRVGDLDSARKL-------------FNTMPGRNVVTWNSMIAGYAQNGQS 216
Query: 293 HEALGMFDRM-TYENVRPN 310
A+ +F M T + + P+
Sbjct: 217 AMAIELFKEMITAKKLTPD 235
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N MI Y+R + +F +M D+ S+ T+I+ ++ + EA++ + K+ G
Sbjct: 275 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 334
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D+VT VL+AC+H G L+ GR +
Sbjct: 335 PDRVTFIGVLTACSHAGLLEEGRKV 359
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 29/182 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R++FDEMP R +WN M+ YA ++ LF+ MP D+ SWT M++ Y++ +
Sbjct: 242 LARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGR 301
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR----------SLG 262
+AL+ F + ++VTM +V SACA L AL GR + +LG
Sbjct: 302 HAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLG 361
Query: 263 RSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
+L+ VF L KN+ WN++ LA +G A + +F++M + +
Sbjct: 362 AALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEK 421
Query: 309 PN 310
P+
Sbjct: 422 PD 423
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q + G + F +++ Y+ R V + +WNT++ YA
Sbjct: 115 VHAQAARRGLLADAFAVNSLLAMYAALRDAASMRGVLESCAEAA---DVVSWNTVVAGYA 171
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R EL F+ MP + SW+ M+ +Y+ Q A D F++ +G VT +
Sbjct: 172 RCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAPAAGR--SVVTWNS 229
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+++ A G L L R + F ++ +NL+ WN++ A++G A
Sbjct: 230 MVAGLARHGLLPLARKM-------------FDEMPARNLVSWNAMVRGYAVNGDVDGARE 276
Query: 298 MFDRMTYENV 307
+FD M ++V
Sbjct: 277 LFDAMPEKDV 286
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ +A +F + ++ +W +I + N R +D F + K S
Sbjct: 363 ALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKP 422
Query: 231 DQVTMATVLSACAHLGALDLGR 252
D VT +VL+ACA G +D GR
Sbjct: 423 DSVTFVSVLAACARAGLVDEGR 444
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 44/276 (15%)
Query: 75 FIDYTILVFPQMQEPNVFVYHAFSSLRH------PLQAIAFY-----LYMLRAEVLLTTV 123
F+ +L F + +P + + FS LR P AF R+
Sbjct: 109 FLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLPFAFSPLAKSAAAARSLPAAAGA 168
Query: 124 HG-QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
H + GF FV+ +++ Y +R+V DEM + +W +++ AY+
Sbjct: 169 HAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKV----LDEMVVKDVISWTSIVAAYS 224
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R AE +F P D+ +WT M+T Y+QN +AL+AF + +G D+V++
Sbjct: 225 RSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTG 284
Query: 238 VLSACAHLGAL-------------DLGRGIQI---------YCRSLGRSLLVFFKLREKN 275
+SACA LGA+ LGR + + C + + VF ++EKN
Sbjct: 285 AISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKN 344
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE-NVRPN 310
+ ++S+ LA HG A++A+ +F+ M +V PN
Sbjct: 345 VYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPN 380
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 31/214 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HGQV K G+ S FVQ ++ + Y+N F ++R +FD +R TW +I Y
Sbjct: 135 HGQVVKFGWESYDFVQNGLI--HLYANCGFMD--LARNMFDMSIKRDVVTWTCLISGYLN 190
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+A LF++MP + SW +I Y + F+EAL+ F + SG ++ ++
Sbjct: 191 SGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGA 250
Query: 239 LSACAHLGALDLGRGIQIYC--------RSLGRSLL--------------VFFKLREKNL 276
L+ACA LGALD GR I Y R LG +L+ VF ++ ++++
Sbjct: 251 LTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDV 310
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + LA H + A+ +F+RM E V PN
Sbjct: 311 YAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPN 344
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ +A +F++M D+ ++T +I+ + + + A+D FN+ + G
Sbjct: 284 ALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVP 343
Query: 231 DQVTMATVLSACAHLGALDLG 251
++VT VL+AC+ +G +D G
Sbjct: 344 NEVTFVCVLNACSRMGMVDEG 364
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 139/338 (41%), Gaps = 86/338 (25%)
Query: 23 SFIRIHIIANQLKKCSSIKELECVYATIVKTN-ANLDCFLAKQFISFCTSRFHFIDYTIL 81
S + H A L+ C+S+KEL + I+K N F K FC +F+ I
Sbjct: 40 SHVYRHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFC--KFNSITEAAR 97
Query: 82 VFPQMQEPNVFVYHAF-------SSLRHPLQAIAFYLYMLRAEVLLTT------------ 122
VF ++ +YH S+LR A+ FY M EV+
Sbjct: 98 VFEPVEHKLDVLYHTMLKGYAKNSTLR---DAVRFYERMRCDEVMPVVYDFTYLLQLSGE 154
Query: 123 ---------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+HG V NGF S +F TA+V+ Y+ + R++
Sbjct: 155 NLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYA------KCRQIE-------------- 194
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
DAY +F +MP D+ SW T++ Y+QN R A+ + +++G D +
Sbjct: 195 -----DAYK-----MFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSI 244
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ +VL A A L AL +GR I Y C S+ + LVF +
Sbjct: 245 TLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+N++ WN++ + A +G + EA F +M E V P
Sbjct: 305 SSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEP 342
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 52/219 (23%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L+A + ++HG ++ GF V V TAM+D Y F+ V
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTY------FKCGSV--------------- 294
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
R A L+F M + ++ SW TMI Y+QN + EA F K G V
Sbjct: 295 ---------RSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345
Query: 234 TMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKL 271
+M L ACA+LG L+ GR I +Y C+ + + VF L
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNL 405
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ K ++ WN++ A +G +EAL +F M +++P+
Sbjct: 406 KHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPD 444
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + VFV TA++D ++ + +R+LFD M ER TWN MID Y
Sbjct: 467 IHGLAIRTLMDKNVFVCTALIDTHAKCGAI----QTARKLFDLMQERHVITWNAMIDGYG 522
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
N REALD FN+ + +++T +V++AC
Sbjct: 523 --------------------------TNGHGREALDLFNEMQNGSVKPNEITFLSVIAAC 556
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 557 SHSGLVEEG 565
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 153 FESRRVSRRLFDEMPER-KFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITS 206
E R RL DE + N++I Y++ +A +F + + +W MI
Sbjct: 360 LERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILG 419
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---GIQI------- 256
Y+QN EAL+ F + + D T+ +V++A A L + G+ I
Sbjct: 420 YAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKN 479
Query: 257 ------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C ++ + +F ++E++++ WN++ + +G EAL +F+ M
Sbjct: 480 VFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQN 539
Query: 305 ENVRPN 310
+V+PN
Sbjct: 540 GSVKPN 545
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 82/193 (42%), Gaps = 26/193 (13%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ KNGF + QT ++ + N E+ RV F+ + + ++TM+ YA+ +
Sbjct: 67 IIKNGFYNEHLFQTKLISLFCKFNSITEAARV----FEPVEHKLDVLYHTMLKGYAKNST 122
Query: 187 L-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
L + +M ++ +T ++ +N R + +G S+ M
Sbjct: 123 LRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTA 182
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
V++ A CR + + +F ++ +++L+ WN++ A +GFA A+
Sbjct: 183 VVNLYAK-------------CRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQ 229
Query: 298 MFDRMTYENVRPN 310
+ +M +P+
Sbjct: 230 VVLQMQEAGQKPD 242
>gi|50253500|gb|AAT71952.1| At3g21470 [Arabidopsis thaliana]
gi|53850541|gb|AAU95447.1| At3g21470 [Arabidopsis thaliana]
Length = 442
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ F+++PE+ W+ M+ Y R+ ++ +F ++ A D+ W T+I Y+QN
Sbjct: 115 ARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYS 174
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQI-------- 256
+A+DAF + G D VT++++LSACA G LD+G RGI++
Sbjct: 175 DDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNAL 234
Query: 257 -----YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + VF + +++ C NS+ LAIHG EAL MF M +++P+
Sbjct: 235 IDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPD 293
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 56/191 (29%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYA------------------------------------ 182
+R++FDEMPER ATWN MI Y
Sbjct: 19 ARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIE 78
Query: 183 -RLAELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
A LF +MP ++++W+ M+ Y N++ +A F + + + ++
Sbjct: 79 IEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPE----KNAFVWSLMM 134
Query: 240 SACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
S +G + R I F+++ ++L+ WN++ A +G++ +A+ F
Sbjct: 135 SGYFRIGDVHEARAI-------------FYRVFARDLVIWNTLIAGYAQNGYSDDAIDAF 181
Query: 300 DRMTYENVRPN 310
M E P+
Sbjct: 182 FNMQGEGYEPD 192
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 28/196 (14%)
Query: 83 FPQMQEPNVFVYHAFSSLR------HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV 136
F + E N FV+ S H +AI FY R V+ T+ +NG+S
Sbjct: 119 FEDIPEKNAFVWSLMMSGYFRIGDVHEARAI-FYRVFARDLVIWNTLIAGYAQNGYSDDA 177
Query: 137 F----------------VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++++ + S + R V + E N +ID
Sbjct: 178 IDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDM 237
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
YA+ +L +F + + +MI+ + + + +EAL+ F+ + D++T
Sbjct: 238 YAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITF 297
Query: 236 ATVLSACAHLGALDLG 251
VL+AC H G L G
Sbjct: 298 IAVLTACVHGGFLMEG 313
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K GF F+QT ++ Y+ ++ F+ + +WN ++ +
Sbjct: 555 LHGMVVKKGFDCYNFIQTTIIHFYAACGMM----DLACLQFEVGAKDHLESWNALVSGFI 610
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A +F+ MP D+ SW+TMI+ Y+Q Q R AL+ F+K SG ++VTM +
Sbjct: 611 KNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVS 670
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK- 274
V SA A LG L GR Y C S+ +L F ++R+K
Sbjct: 671 VFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKT 730
Query: 275 -NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WN+I LA HG A L +F M N++PN
Sbjct: 731 FSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPN 767
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V K G S F+Q ++++ Y+ S + ++ LFD P + N M+ YA
Sbjct: 291 LHSLVLKLGLHSNTFIQNSLINMYAKRG----SIKDAQLLFDACPTLNPISCNIMVCGYA 346
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +L LF+ MP S+TTMI QN+ FREAL+ F + G + +T+
Sbjct: 347 KAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVN 406
Query: 238 VLSACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKN 275
V+ AC+H G + R I C +G + +F ++ E N
Sbjct: 407 VIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVN 466
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L+ WN + A G A +F+R+ ++V
Sbjct: 467 LVSWNVMLNGYAKAGLVDMARELFERVPDKDV 498
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFN 190
V V T ++ Y + E+RR LFD MPE +WN M++ YA+ +A LF
Sbjct: 436 VLVSTNLMRAYCLCSGVGEARR----LFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFE 491
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
++P D+ SW TMI Y + EAL + +SG +++ + ++SAC L A +
Sbjct: 492 RVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNA--I 549
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
G G Q++ ++V +K C+N I + IH +A A GM D
Sbjct: 550 GDGWQLH------GMVV-----KKGFDCYNFIQTTI-IHFYA--ACGMMD 585
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 176 TMIDAYARLAEL-----LFNKM--PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+ID YA+ + FN++ + + W +I + + LD F+ ++
Sbjct: 705 ALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNI 764
Query: 229 GSDQVTMATVLSACAHLGALDLGRGI 254
+ +T VLSAC H G ++ GR I
Sbjct: 765 KPNPITFIGVLSACCHAGLVEPGRRI 790
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 35/257 (13%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
L++C +I++L ++A ++KT L +A+ + +DY + +F Q+ EP+
Sbjct: 31 LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSP 90
Query: 93 VYH----AFSSLRHPLQAIAFYLYM---------------------LRAEVLLTTVHGQV 127
Y+ F+ + P +AI + M L+A +H +
Sbjct: 91 AYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALI 150
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA-- 185
K GF S FV+ ++ Y+ + V+RR+FDEM ER TWN+M Y +
Sbjct: 151 MKCGFGSHGFVKNTLIHMYANCGEV----EVARRVFDEMSERNVRTWNSMFAGYTKSGNW 206
Query: 186 -ELLFNKMPAWDIRSWTTMITSYS--QNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
E++ + ++ T+ITS Q + REALD F++ +K+ +++TM ++LS+C
Sbjct: 207 EEVVKLYVEEKGLKGNPTLITSLVDIQASRCREALDLFHEMQKANIDPNEITMVSILSSC 266
Query: 243 AHLGALDLGRGIQIYCR 259
A LGAL+ G+ + + +
Sbjct: 267 AVLGALETGKWVHFFIK 283
>gi|7262690|gb|AAF43948.1|AC012188_25 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC004044.1 and contains two domains PF|01535
of unknown function [Arabidopsis thaliana]
Length = 455
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAYARLAEL-----LFN 190
FV+TA++D ++ + +RR+F+E+ +R TWN MI Y R+ ++ LF+
Sbjct: 215 FVKTALLDMHAKCRDI----QSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFD 270
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249
MP ++ SW ++I Y+ N Q A++ F G + D+VTM +VLSAC H+ L+
Sbjct: 271 TMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLE 330
Query: 250 LGRGIQIYCR--------SLGRSLL--------------VFFKLREKNLLCWNSITEALA 287
LG I Y R S RSL+ VF +++E++++ +N++ A A
Sbjct: 331 LGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFA 390
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G E L + +M E + P+
Sbjct: 391 ANGDGVETLNLLSKMKDEGIEPD 413
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
+LFD MPE +W MI +A++ +L F++MP + SW M++ Y+QN +
Sbjct: 103 KLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTED 162
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--------------------- 254
AL FN + G ++ T V+SAC+ L R +
Sbjct: 163 ALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLD 222
Query: 255 -QIYCRSLGRSLLVFFKL-REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
CR + + +F +L ++NL+ WN++ G A +FD M NV
Sbjct: 223 MHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNV 277
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 57/189 (30%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V K GF +V+ ++D Y ES +R++FD++ +RK + WN MI Y +
Sbjct: 42 VEKLGFFKDPYVRNVIMDMYVK----HESVESARKVFDQISQRKGSDWNVMISGYWKWGN 97
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
LF+ MP D+ SWT MIT +++ K A F++
Sbjct: 98 KEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDR------------------- 138
Query: 242 CAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
+ EK+++ WN++ A +GF +AL +F+
Sbjct: 139 -----------------------------MPEKSVVSWNAMLSGYAQNGFTEDALRLFND 169
Query: 302 MTYENVRPN 310
M VRPN
Sbjct: 170 MLRLGVRPN 178
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+ + ++I YAR L +F++M D+ S+ T+ T+++ N E L+ +K K
Sbjct: 349 SGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDE 408
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI 254
G D+VT +VL+AC G L G+ I
Sbjct: 409 GIEPDRVTYTSVLTACNRAGLLKEGQRI 436
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 65/294 (22%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYML------------ 114
S++ I+Y +F + PN F Y+ ++ P A++ + ML
Sbjct: 70 SQYANINYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGQNKLTF 129
Query: 115 ----------RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164
RA VHG V+K+G S +FVQ +++ YS + ++F+
Sbjct: 130 PFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSSCGLI----GFACQVFN 185
Query: 165 EMPERKFATWNTMIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
++ + +WN+MI L + +F++M + +W +I Y + EA +
Sbjct: 186 KIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLLMEAREL 245
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------- 257
F++ + TM +VL+AC++LGAL+ G +Q +
Sbjct: 246 FDQMR--------FTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVLGTALVEMFAK 297
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C S+ R+L VF + E+++ WNSI LA HG EA +F M N +G
Sbjct: 298 CGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLDG 351
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 58/258 (22%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS ++ +E V+ + K + D F+ IS +S I + VF ++ +P+
Sbjct: 133 LKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSS-CGLIGFACQVFNKIDDPD 191
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V +++S+ L + F Q++ + ++D Y +
Sbjct: 192 VV---SWNSMISGLVDLGF-----------VEEGKQMFDRMSKRSLVTWNCLIDGYVKAG 237
Query: 151 KFFESRRVSRRLFDEMP--------------------------ERKFATWNT-----MID 179
E+R LFD+M E+ N+ +++
Sbjct: 238 LLMEARE----LFDQMRFTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVLGTALVE 293
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
+A+ + +F + D+ +W ++I + + +EA F+ +S T D +
Sbjct: 294 MFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLDGII 353
Query: 235 MATVLSACAHLGALDLGR 252
+LS C HLG +D G+
Sbjct: 354 FLGLLSVCRHLGLVDEGK 371
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 140/336 (41%), Gaps = 86/336 (25%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
+ N CS++ L+ ++A I T N + L+ + I FC ++Y + VF ++ +P
Sbjct: 15 LMNLFNHCSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCAVS-QNMNYALNVFDKIPKP 73
Query: 90 NVFVYHAF-----SSLRHPLQAIAFYLYM--------------------LRAEVLLTTVH 124
+ F+++ +S H AI F+ M LR L +H
Sbjct: 74 DSFLWNTMIRGFGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIARLRFVNLGKQLH 133
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
++K GF + +V+ +++ Y + ++ +LF+EM + +WN++ID +
Sbjct: 134 CSLFKFGFENHTYVRNSLIHMYG----MLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYC 189
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTG----SDQVTMATVL 239
++ EA+D F K ++ G D T+ L
Sbjct: 190 G--------------------------KYNEAIDLFTKMVQQQHNGMELQPDHATLVVTL 223
Query: 240 SACAHLGALDLGRGIQIYCR----SLGRSLLVFFKL--------------------REKN 275
SAC +G+LD GR + + R S G S+ VF L + KN
Sbjct: 224 SACGAIGSLDFGRKVHSFVRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKN 283
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENV-RPN 310
++ WN + A HG EAL +F RM +ENV RP+
Sbjct: 284 VVSWNVMILGFASHGNGEEALALFTRMLHENVERPD 319
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KK 225
+ +N ++D YA+ + F+ M ++ SW MI ++ + EAL F + +
Sbjct: 254 SVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALFTRMLHE 313
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR 252
+ D++T VL AC+H G +D GR
Sbjct: 314 NVERPDEITFLCVLCACSHGGLVDEGR 340
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 53/211 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K G S +FVQ A++ Y Y S ++ ++FDEM ER
Sbjct: 106 LHSLIVKYGLGSDIFVQNALICVYGYCG----SLEMAVKVFDEMSER------------- 148
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSA 241
D SW+T+I S+ N EALD F K + + D+VTM +V+SA
Sbjct: 149 -------------DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISA 195
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
+HLG L+LGR ++ + C S+ S++VF K+ +N+L W
Sbjct: 196 ISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTW 255
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ L IHG + EAL MF M V+P+
Sbjct: 256 TALINGLGIHGRSMEALAMFHSMRKSGVQPD 286
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 24/143 (16%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQF--REALDAFNKTKKSGTGSDQVTMATVLSAC 242
A +F+++P+ D ++ T+I S+S+ F +L F + +G D T VL AC
Sbjct: 41 ARYVFSRIPSPDTIAYNTIIRSHSR---FFPSHSLSYFFSMRSNGIPLDNFTFPFVLKAC 97
Query: 243 A------HLGAL----DLGRGIQI---------YCRSLGRSLLVFFKLREKNLLCWNSIT 283
+ HL +L LG I + YC SL ++ VF ++ E++ + W+++
Sbjct: 98 SRLQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVI 157
Query: 284 EALAIHGFAHEALGMFDRMTYEN 306
+ +G+A EAL +F++M E+
Sbjct: 158 ASFLNNGYASEALDLFEKMQLED 180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +ID ++R + +F KM ++ +WT +I + + EAL F+ +KS
Sbjct: 222 ALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKS 281
Query: 227 GTGSDQVTMATVLSACAHLGALDLG 251
G D VT + VL AC+H G + G
Sbjct: 282 GVQPDYVTFSGVLVACSHGGLVKEG 306
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FD M + N ++ Y + L +F MP D SW T++ ++ +
Sbjct: 152 ARRVFDRMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRL 211
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR-------------- 259
+A+ F++ ++ G D V +A VLS CA LGALD G+ + Y R
Sbjct: 212 EKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGI 271
Query: 260 -----SLGRSLL---VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
GR + VF EKN+ WN++ LA+HG AL FDRM E RP+G
Sbjct: 272 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 331
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ +A +F+ P ++ +W +I + + ALD F++ G D
Sbjct: 271 IVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPD 330
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-----KNLLCWNSITEAL 286
T VL C+H G +D R I F++++ + L + + + L
Sbjct: 331 GTTFLGVLIGCSHAGLVDTARRI-------------FYEMQHNHGVPRELKHYGCMADLL 377
Query: 287 AIHGFAHEALGMFDRMTYE 305
G EA+ M M E
Sbjct: 378 GRAGLIDEAMEMISSMPME 396
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 62/289 (21%)
Query: 79 TILVFPQMQEPNV--------FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV------- 123
T+ ++ +M++ V FV A S L AF+ ++R +L
Sbjct: 62 TVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALIL 121
Query: 124 -HGQVWKNGFSSPVFVQTA---------MVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
H G +S +F +A M Y+ K E+ R LFDEMP +
Sbjct: 122 FHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMR----LFDEMPYKDQVA 177
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN MI + E+ LF++ D+ +W MI+ Y +EAL F + + +G
Sbjct: 178 WNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGE 237
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY---------------------------CRSL 261
D VT+ ++LSACA LG L+ G+ + IY C S+
Sbjct: 238 HPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSI 297
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R++ VF +++++L WN++ LA+H A ++ MF+ M V PN
Sbjct: 298 DRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPN 345
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
E+ VS ++ P WN +ID YA+ + +F + D+ +W T+I
Sbjct: 267 ILETASVSSSIYVGTP-----IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVG 321
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + +++ F + ++ ++VT V+ AC+H G +D GR
Sbjct: 322 LALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 366
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 51/285 (17%)
Query: 74 HFIDYTILVFPQMQEPNVFVYHAF-SSLRH---PLQAIAFYLYMLRAEVLLTT------- 122
H ++Y++ +F P+ F+Y+ SL H PL ++ ++ +LR LL
Sbjct: 59 HVLNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFT 118
Query: 123 ----------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166
+H +++GF +FV T ++ Y+ + +R++FDEM
Sbjct: 119 LKGIANDGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCY----EYARKVFDEM 174
Query: 167 PERKFATWNTMIDAYARLA------------ELLFNKMPAWDIRSWTTMITSYSQNKQFR 214
+ WN ++ A R E++F +M D SW+TMI ++++ F
Sbjct: 175 SQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFH 234
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK--LR 272
+A F + + +V++ VLSACA GA + G+ + + G +V L
Sbjct: 235 DAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALI 294
Query: 273 EKNLLCWN------SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ C N +LA+HG A EA+ +F M VRP+G
Sbjct: 295 DTYSKCGNVDMAKLVFNISLAMHGRADEAIRVFHEMEESGVRPDG 339
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 29/178 (16%)
Query: 162 LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREA 216
L + MP + +WNT+I Y RL ++ +F MP D SW ++I K + A
Sbjct: 206 LLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGA 265
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL-- 266
+ F++ + + +VT+ +VL ACA GAL++G I ++ LG +LL
Sbjct: 266 MGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNM 325
Query: 267 ------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT--YENVRPN 310
VF +R K L CWN++ LA+HG+ EAL +F M + VRPN
Sbjct: 326 YSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPN 383
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 6 VRAIITSF---KKNSFPTSVSFIRIHIIANQLKKCSSIKEL---ECVYATIVKTNANLDC 59
+ A +T F ++ + P S SF + L+ C+ + L ++A ++ + D
Sbjct: 164 LHAALTEFNLLRQAALPDSFSFPCL------LRACARVSCLPAGRALHAAAIRLGVHADL 217
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPN----VFVYHAFSSLRHPLQAIAFYLYMLR 115
F+ I F R D +F Q+ P+ + A+ + + A A + M +
Sbjct: 218 FIRTALIQF-YGRCGVADAARALFYQIDIPSEVSWTAIIVAYVNNGGIIDARALFDTMPQ 276
Query: 116 AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
V VH V MVD Y +RRLFDEMPER
Sbjct: 277 RNV----VHWNV--------------MVDGYVKCGDL----EGARRLFDEMPERTATACT 314
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++I YA+ A LLF+K+ D+ SW+ MI+ Y+QN EAL F++ + G
Sbjct: 315 SLIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHP 374
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLV 267
D++ + ++SAC+ LG + L I+ Y C +L R+ +
Sbjct: 375 DELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFL 434
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + +++ + S+ + +HG A +A+ +F RM E + P+
Sbjct: 435 FESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPD 477
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF MP D+ S+ +++ Y + +A+ F++ G D VL+AC H
Sbjct: 431 ATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCH 490
Query: 245 LGALDLGR 252
G ++ G+
Sbjct: 491 AGLVEEGK 498
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 69/324 (21%)
Query: 47 YATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPNVFVYHAF------- 97
+A +VKT + + + + C HF + Y + VF QEPN+ +++
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 98 SSLRHPLQAIA------------FYLYMLRAEVLLTT------VHGQVWKNGFSSPVFVQ 139
S L PL+ + ++L++ T +H QV K G +
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPA 194
T+++ Y+ + + ++R+V FD +R + +I YA R A +F+ +
Sbjct: 122 TSLISMYARNGRLEDARKV----FDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITE 177
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ SW MIT Y +N + EAL+ F + ++ D+ T+ +VLSACA G+++LGR I
Sbjct: 178 RDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREI 237
Query: 255 QIYC---RSLGRSLLV--------------------FFKLREKNLLCWNSITEALAIHGF 291
G SL + F L K+++ WN++ I G+
Sbjct: 238 HTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTL-----IGGY 292
Query: 292 AH-----EALGMFDRMTYENVRPN 310
H EAL +F M PN
Sbjct: 293 THMNLYKEALLLFQEMLRSGESPN 316
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N I Y++ ++ LF + D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 255 NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 314
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM +VL ACAHLGA+D+GR I +Y C + +
Sbjct: 315 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAH 374
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A+ A +F RM + P+
Sbjct: 375 QVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPD 419
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN M + SW MI ++ + + A D F++ +K+G
Sbjct: 359 SLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP 418
Query: 231 DQVTMATVLSACAHLGALDLGRGI 254
D +T+ +LSAC+H G LDLGR I
Sbjct: 419 DDITLVGLLSACSHSGLLDLGRHI 442
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 51/312 (16%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
+KKC S++E + V+ I+K LD F + ++ C S ++ +DY +F Q+ EP F
Sbjct: 39 VKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTF 98
Query: 93 VYHAFSSLRHPLQAI----AFYLY--MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
++ +R + + A YLY ML+ EV + F+ PV ++
Sbjct: 99 DFNTM--IRGYVNNMNFENAIYLYNDMLQREV---------EPDNFTYPVVLKAC----- 142
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
+ E ++ +F E N++I+ Y + ++ +F +M + SW+
Sbjct: 143 ARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWS 202
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGR-------- 252
+I +++ + E L F + G +++ + VLSAC HLGA LGR
Sbjct: 203 AIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLK 262
Query: 253 --------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
+ + C SL + L +F + KN L ++ I L +HG+ +AL +
Sbjct: 263 NITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQI 322
Query: 299 FDRMTYENVRPN 310
F M E + P+
Sbjct: 323 FSEMVEEGLEPD 334
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 34 LKKCSS---IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ I+E ++ + K D ++ I+ + I+ + +F +M++ +
Sbjct: 139 LKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINM-YGKCRDIEMSCAIFRRMEQKS 197
Query: 91 VFVYHAF----SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
V + A +SL + +A + M R W+ S V V +A
Sbjct: 198 VASWSAIIAAHASLAMWWECLALFEDMSRE---------GCWRAEESILVNVLSAC---- 244
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
++ F R L + E A +++D Y + L LF M + S++
Sbjct: 245 THLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYS 304
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+I+ + R+AL F++ + G D VT +VLSAC+H G +D G
Sbjct: 305 VIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEG 354
>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g17630
gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 731
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 39/233 (16%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L A + VHG V K GF + + A++ Y K + + LF ++ + +
Sbjct: 307 LEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKV----KDAEHLFRQIRNKGIES 362
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWD--------IRSWTTMITSYSQNKQFREALDAF 220
WN++I ++ +L LF+++ + + +WT++I + + ++L+ F
Sbjct: 363 WNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYF 422
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------C 258
+ + S ++ VT+ +LS CA L AL+LGR I + C
Sbjct: 423 RQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKC 482
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L LVF +R+K+L+ WNSI + +HGFA +AL MFDRM P+G
Sbjct: 483 GLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDG 535
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 35/214 (16%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H QV + G + V ++ Y + + ++ LF EMP R +WN MI +++
Sbjct: 181 HTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYN----LFVEMPVRNRMSWNVMIKGFSQ 236
Query: 184 -----LAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
A +F M + + +WT++++ +SQ +F + L F+ + SG
Sbjct: 237 EYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEA 296
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLG-------RSLLV---------------FFKLR 272
+A S CA L AL + + Y G R+ L+ F ++R
Sbjct: 297 LAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIR 356
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
K + WNS+ + G EAL +F + N
Sbjct: 357 NKGIESWNSLITSFVDAGKLDEALSLFSELEEMN 390
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + S + VQ A+V+ Y+ E
Sbjct: 456 IHGHVIRTSMSENILVQNALVNMYAKCGLLSE---------------------------- 487
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+F + D+ SW ++I Y + +AL F++ SG D + + VLSAC
Sbjct: 488 --GSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSAC 545
Query: 243 AHLGALDLGRGI 254
+H G ++ GR I
Sbjct: 546 SHAGLVEKGREI 557
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 176 TMIDAYARLAELLFNK--------MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+I YARL LL + + D+R W +++ + + + AL+ + ++ G
Sbjct: 94 NLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRG 153
Query: 228 TGSDQVTMATVLSACAHLGALDLGRG-----IQIYCRS-----------------LGRSL 265
D + +L AC +LG L R IQI + +G +
Sbjct: 154 LTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHE-----ALGMFDRMTYENVRPN 310
+F ++ +N + WN + I GF+ E A+ +F+ M E +P+
Sbjct: 214 NLFVEMPVRNRMSWN-----VMIKGFSQEYDCESAVKIFEWMQREEFKPD 258
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 143/333 (42%), Gaps = 73/333 (21%)
Query: 39 SIKELECVYATIVKTNANLDCFLAKQFI---SFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
S+K ++ I+ + + LA + I + C +H + LVF +Q NVF+++
Sbjct: 38 SLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYH----SRLVFDSLQHKNVFLWN 93
Query: 96 AF--SSLRHPLQAIAFYLY--MLRAEVL-----LTT----------------VHGQVWKN 130
+ ++ L AF L+ M ++VL L+T +HG+ +
Sbjct: 94 SLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRI 153
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL-- 188
GF S V +++ Y F ESR+V FDEM R +WN +I YA L+
Sbjct: 154 GFVSDTVVANSIMSMYCKCGNFEESRKV----FDEMTIRNSGSWNVLIAGYAVSGNLVVG 209
Query: 189 ---FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAH 244
F++M ++ SWT MI Y +N EAL F + G ++V++ +VL AC+
Sbjct: 210 RRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSS 269
Query: 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC---- 278
L GR I + C SL + VF E + LC
Sbjct: 270 FSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF----EDDSLCKDAI 325
Query: 279 -WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W+S+ +HG EA+ ++D+M +RP+
Sbjct: 326 SWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 358
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 175 NTMIDAYARLAEL------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N +ID Y++ L + D SW++MI+ Y + + +EA+ ++K ++G
Sbjct: 296 NALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGI 355
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY 257
D +T +LSAC+ G ++ G+ IY
Sbjct: 356 RPDMITTVGILSACSRSGLVN--EGLNIY 382
>gi|356501900|ref|XP_003519761.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62890-like [Glycine max]
Length = 567
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 28/207 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H Q++ G ++ FVQT++++ YS +R++FDE+ + +WN +I A A
Sbjct: 80 LHAQIFLLGLANDPFVQTSLINMYSSRGTL----TFARQVFDEITQPDLPSWNAIIHANA 135
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +A LF++MP ++ SW+ MI Y+ +++ AL F + Q
Sbjct: 136 KAGMIHIARKLFDQMPHRNVISWSCMIHGYASCGEYKAALSLFRSLQTLEGSKVQPN--- 192
Query: 238 VLSACAHLGALDLGRGIQIYCRS--------LGRSLLVFFKL------REKNLLCWNSIT 283
CA LGAL+ G+ + Y LG SL+ + EK+++ W+++
Sbjct: 193 --EXCARLGALEHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGXIFGPEKDVMAWSAMI 250
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
A A+HG + E L +F RM + VRPN
Sbjct: 251 TAFAMHGLSEECLELFARMVNDGVRPN 277
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
++ID YA+ + P D+ +W+ MIT+++ + E L+ F + G + VT
Sbjct: 225 SLIDMYAKCGXIF---GPEKDVMAWSAMITAFAMHGLSEECLELFARMVNDGVRPNAVTF 281
Query: 236 ATVLSACAHLGALDLG 251
VL AC H G + G
Sbjct: 282 VGVLCACVHGGLVSEG 297
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 27/184 (14%)
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
E +++ LFD MP R +TWNTMI YA+ ++ LF+KMP D SW MI YS
Sbjct: 326 ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS 385
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------- 255
Q+ EAL F + ++ G ++ + ++ LS CA + AL+LG+ +
Sbjct: 386 QSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCF 445
Query: 256 -------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
+YC+ S+ + +F ++ K+++ WN++ + HGF AL F+ M E
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREG 505
Query: 307 VRPN 310
++P+
Sbjct: 506 LKPD 509
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
M+ Y + +F ++R+LFDEMPER +WN MI Y R A LF MP
Sbjct: 99 NGMISGYLRNGEF----ELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE 154
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ SW TM++ Y+QN +A F++ + + V+ +LSA ++
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSVFDRMPE----KNDVSWNALLSAYVQNSKME----- 205
Query: 255 QIYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ FK RE L+ WN + EA FD M +V
Sbjct: 206 ---------EACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDV 250
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ FD M R +WNT+I YA+ ++ LF++ P D+ +WT M++ Y QN+
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 214 REALDAFNKTKKSGTGS-----------DQVTMATVL---SACAHLGALDLGRGIQIYCR 259
EA + F+K + S +++ MA L C ++ + C
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + +F K+ +++ + W ++ + G + EAL +F +M E R N
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+F MP ++N MI Y R LA LF++MP D+ SW MI Y +N+ +
Sbjct: 85 RVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGK 144
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A + F + D + T+LS A G +D R VF ++ EKN
Sbjct: 145 ARELFEIMPE----RDVCSWNTMLSGYAQNGCVDDARS-------------VFDRMPEKN 187
Query: 276 LLCWNSITEALAIHGFAHEALGMF 299
+ WN++ A + EA +F
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLF 211
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 30/134 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HG++ K G+ + FV A++ Y E
Sbjct: 427 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE------------------------ 462
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A LF +M DI SW TMI YS++ AL F K+ G D TM V
Sbjct: 463 ------ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516
Query: 239 LSACAHLGALDLGR 252
LSAC+H G +D GR
Sbjct: 517 LSACSHTGLVDKGR 530
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI- 254
DI+ W I+SY + + EAL F + + + V+ ++S G +L R +
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSS----VSYNGMISGYLRNGEFELARKLF 118
Query: 255 -----------------QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+ R+LG++ +F + E+++ WN++ A +G +A
Sbjct: 119 DEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS 178
Query: 298 MFDRMTYEN 306
+FDRM +N
Sbjct: 179 VFDRMPEKN 187
>gi|302780855|ref|XP_002972202.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
gi|300160501|gb|EFJ27119.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
Length = 485
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 109/218 (50%), Gaps = 33/218 (15%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
++H +V +GF + VFV A+V+ YS + ++R F+ + + +WN+MI A+
Sbjct: 16 SIHDRVAADGFDTQVFVGNALVNMYSKCRRL----DLARAAFERIDSKDVVSWNSMIAAH 71
Query: 182 ARLA-------ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
++L +F++M ++ SW+ +I + +++ + R+A++ F++ G ++VT
Sbjct: 72 SQLGGSDEALETAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVT 131
Query: 235 MATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLR 272
+ +VL ACA GA+ GR + +Y C LG + VF +
Sbjct: 132 LLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMT 191
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ W ++ A HG EA +F M E ++PN
Sbjct: 192 WRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPN 229
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FD M + N ++ Y + L +F MP D SW T++ ++ +
Sbjct: 152 ARRVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRL 211
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR-------------- 259
+A+ F++ ++ G D V +A VLS CA LGALD G+ + Y R
Sbjct: 212 EKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGI 271
Query: 260 -----SLGRSLL---VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
GR + VF EKN+ WN++ LA+HG AL FDRM E RP+G
Sbjct: 272 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 331
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ +A +F+ P ++ +W +I + + ALD F++ G D
Sbjct: 271 IVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPD 330
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-----KNLLCWNSITEAL 286
T VL C+H G +D R I F++++ + L + + + L
Sbjct: 331 GTTFLGVLIGCSHAGLVDTARRI-------------FYEMQHNHGVPRELKHYGCMADLL 377
Query: 287 AIHGFAHEALGMFDRMTYE 305
G EA+ M M E
Sbjct: 378 GRAGLIDEAMEMISSMPME 396
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 62/289 (21%)
Query: 79 TILVFPQMQEPNV--------FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV------- 123
T+ ++ +M++ V FV A S L AF+ ++R +L
Sbjct: 96 TVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALIL 155
Query: 124 -HGQVWKNGFSSPVFVQTA---------MVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
H G +S +F +A M Y+ K E+ R LFDEMP +
Sbjct: 156 FHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMR----LFDEMPYKDQVA 211
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN MI + E+ LF++ D+ +W MI+ Y +EAL F + + +G
Sbjct: 212 WNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGE 271
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY---------------------------CRSL 261
D VT+ ++LSACA LG L+ G+ + IY C S+
Sbjct: 272 HPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSI 331
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R++ VF +++++L WN++ LA+H A ++ MF+ M V PN
Sbjct: 332 DRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPN 379
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
E+ VS ++ P WN +ID YA+ + +F + D+ +W T+I
Sbjct: 301 ILETASVSSSIYVGTP-----IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVG 355
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + +++ F + ++ ++VT V+ AC+H G +D GR
Sbjct: 356 LALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 400
>gi|15218490|ref|NP_172504.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213381|sp|Q9SY75.1|PPR30_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g10330
gi|4914335|gb|AAD32883.1|AC005489_21 F14N23.21 [Arabidopsis thaliana]
gi|332190445|gb|AEE28566.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HGQ K GF FVQT+ V Y SR++FD++ N+++DA
Sbjct: 108 LHGQALKRGFLWDPFVQTSFVRFYGEVGDL----ESSRKMFDDILNPCVVACNSLLDACG 163
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN---KTKKSGTGSDQVT 234
R E+ F +MP D+ SWTT+I +S+ +AL F + +++ ++ T
Sbjct: 164 RNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEAT 223
Query: 235 MATVLSACAHL--GALDLGRGIQIYCRS----------------------LGRSLLVFFK 270
+VLS+CA+ G + LG+ I Y S L +L +F +
Sbjct: 224 FVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQ 283
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+R+K + WN+I ALA +G +AL MF+ M V PNG
Sbjct: 284 IRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNG 324
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
D Y + +L +F+++ + +W +I++ + N + ++AL+ F K S + +
Sbjct: 266 DMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGI 325
Query: 234 TMATVLSACAHLGALDLGRGIQIY 257
T+ +L+ACA +DL GIQ++
Sbjct: 326 TLLAILTACARSKLVDL--GIQLF 347
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 124/279 (44%), Gaps = 62/279 (22%)
Query: 56 NLDCFLAKQFISFCTSRFH-FIDYTILVFPQMQEPNVF-VYHAFSSLRHPLQAIAFYLYM 113
N D FL I TS+FH F Y++ + +M NV + F+S+ +++ A + +
Sbjct: 72 NPDSFLFTSLIR-STSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSV---IKSCADLVAL 127
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+ +HG V NGF S V+VQTA++ Y +R+V FD+M +R T
Sbjct: 128 RHGRI----IHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKV----FDKMRDRSVVT 179
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
WN +MI+ Y QN +EA+ F++ K+ G +
Sbjct: 180 WN--------------------------SMISGYEQNGFAKEAIRLFDRMKEIGVEPNSA 213
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T +VLSACAHLGA LG + Y C ++ ++ VF +
Sbjct: 214 TFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSM 273
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+E+N++ W ++ +G+ +A+ +F M + PN
Sbjct: 274 KERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPN 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFRE-ALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F +P D +T++I S S+ F +L + + S T +V+ +CA L
Sbjct: 66 IFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLV 125
Query: 247 ALDLGR-----------GIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL GR G +Y C L + VF K+R+++++ WNS+
Sbjct: 126 ALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMIS 185
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
+GFA EA+ +FDRM V PN
Sbjct: 186 GYEQNGFAKEAIRLFDRMKEIGVEPN 211
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 53/211 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAY 181
+H Q + G + +VQT +++ Y+ E ++R +FD M P++ W+ MI+ Y
Sbjct: 148 LHAQALRQGLEASAYVQTGLLNLYAKC----EQVALARTVFDGMAPDKSLVAWSAMINGY 203
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+R+ M+T EAL F + + G D+VTM V+SA
Sbjct: 204 SRVG-----------------MVT---------EALGLFREMQAVGVEPDEVTMVGVISA 237
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA GALDLG+ + Y C + R+ VF + EK+ W
Sbjct: 238 CAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAW 297
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ AIHG +ALG+F RM VRPN
Sbjct: 298 SAMIVGFAIHGLVEDALGLFSRMLELKVRPN 328
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ A +F+ M D ++W+ MI ++ + +AL F++ +
Sbjct: 268 ALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRP 327
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT VLSACAH G +D GR
Sbjct: 328 NNVTFIGVLSACAHSGLVDDGR 349
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +++ YA+ + LF +MP D+ SW +I YS N Q EAL FN+ + G
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIK 319
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
+ +TM +VL ACAHL AL+ G+ I Y C ++ + +
Sbjct: 320 PNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKL 379
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ +KN++ WN+I + HG HEAL +F M + ++P+
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPD 422
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + GF S V V TA+ Y+ +R+V FD MP+R
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQV----FDRMPKR------------- 184
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW +I YSQN Q EAL F++ + +G + T+ +V+ C
Sbjct: 185 -------------DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVC 231
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
AHL AL+ G+ I Y C ++ + +F ++ +++ WN
Sbjct: 232 AHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWN 291
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+I +++ HEAL F+RM ++PN
Sbjct: 292 AIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 27/162 (16%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E N +++ YA+ + LF +MP ++ +W +I+ YSQ+ EAL F +
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIE 413
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRS 260
+ G D + +VL ACAH AL+ G+ I Y C +
Sbjct: 414 MQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGN 473
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ + +F ++ E++++ W ++ A IHG +AL +F +M
Sbjct: 474 VNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKM 515
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 63/249 (25%)
Query: 82 VFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTT--------------- 122
+F +M + NV ++A +S HP +A+A ++ M + +
Sbjct: 379 LFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLA 438
Query: 123 ------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+HG ++GF S V V T +VD Y+ K NT
Sbjct: 439 LEQGKQIHGYTIRSGFESNVVVGTGLVDIYA----------------------KCGNVNT 476
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ LF +MP D+ SWTTMI +Y + +AL F+K +++GT D +
Sbjct: 477 --------AQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFT 528
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+L+AC+H G +D +G+Q Y + + + KL + + + L G EA
Sbjct: 529 AILTACSHAGLVD--QGLQ-YFQCMKSDYGLAPKLEH-----YACLVDLLGRAGHLDEAN 580
Query: 297 GMFDRMTYE 305
G+ M+ E
Sbjct: 581 GIIKNMSLE 589
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 196 DIRS----WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
DIR+ W I Y +N + +AL + + +++G D++ +V+ AC L G
Sbjct: 80 DIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAG 139
Query: 252 RGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R + C SL + VF ++ +++++ WN+I + +
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQN 199
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G +EAL +F M ++PN
Sbjct: 200 GQPYEALALFSEMQVNGIKPN 220
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 86/277 (31%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--------------------- 158
L VH V K G +V A++D YS + F ++ +V
Sbjct: 138 LRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVR 197
Query: 159 ------SRRLFDEMPERKFATWNTMIDAYAR----------------------------- 183
+RR+FDEM E+ +WNT++D Y +
Sbjct: 198 QGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGY 257
Query: 184 -------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+A ++F+KMP ++ +WT M+++ +QN EA F + K++ D +
Sbjct: 258 CKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVV 317
Query: 237 TVLSACAHLGALDLGRGIQIYCRS--LGRS------LLVFF---------------KLRE 273
++L+ACA G+L LG+ I Y R+ LGRS L+ F ++ E
Sbjct: 318 SILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVE 377
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ + WN+I A+HG +AL F +M + P+
Sbjct: 378 KDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPD 414
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMPAWDIRSWTTMITSYS 208
+R+ R + R N +ID + + A+ +F+ ++ D SW T+I ++
Sbjct: 332 GKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFA 391
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ +ALD F + K G D VTM VLSAC H+G ++ GR
Sbjct: 392 MHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGR 435
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HGQV GF S V + +++D Y+ + ++R FDEM + W T+I YA+
Sbjct: 202 HGQVLVAGFLSNVVLSCSIIDAYAKCGQM----ESAKRCFDEMTVKDIHIWTTLISGYAK 257
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L AE LF +MP + SWT +I Y + ALD F K G +Q T ++
Sbjct: 258 LGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSC 317
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK-N 275
L A A + +L G+ I Y SL S VF +K +
Sbjct: 318 LCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHD 377
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ ALA HG H+AL M D M V+PN
Sbjct: 378 CVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPN 412
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 123 VHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H + GF P + ++ Y K ++ +V FD+M R +WN M+ Y
Sbjct: 68 IHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKV----FDQMHLRNLYSWNNMVSGY 123
Query: 182 AR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ A ++F+ MP D+ SW TM+ Y+Q+ EAL + + ++SG ++ + A
Sbjct: 124 VKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFA 183
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+L+AC L L R ++ G+ L+ F N++ SI +A A G A
Sbjct: 184 GLLTACVKSRQLQLNR------QAHGQVLVAGFL---SNVVLSCSIIDAYAKCGQMESAK 234
Query: 297 GMFDRMTYENV 307
FD MT +++
Sbjct: 235 RCFDEMTVKDI 245
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 35/191 (18%)
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
A+V +Y KF +++ FD+MP+R +W T+++ Y + ++ +F+ M
Sbjct: 177 ALVSSYMELGKFVDAQTA----FDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSER 232
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
++ SWT MI+ Y QNK+F +AL F K+ T + T ++VL ACA G+ L G+Q
Sbjct: 233 NVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACA--GSSSLIMGLQ 290
Query: 256 IY------------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
++ C + + VF +R+KNL+ WN+I A HG
Sbjct: 291 LHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGL 350
Query: 292 AHEALGMFDRM 302
A AL FDRM
Sbjct: 351 ATRALEEFDRM 361
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 57/199 (28%)
Query: 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+VL+ VH + G VFV ++++ Y+ + R F+++ + +WN
Sbjct: 122 DVLVRQVHALAFHLGHYLNVFVGSSLIRAYA----GLKEEEALGRAFNDISMKDVTSWNA 177
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++ +Y L A+ F++MP +I SWTT++ Y +NKQ +A
Sbjct: 178 LVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKA--------------- 222
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
RS VF + E+N++ W ++ +
Sbjct: 223 -------------------------------RS--VFDDMSERNVVSWTAMISGYVQNKR 249
Query: 292 AHEALGMFDRMTYENVRPN 310
+AL +F M RPN
Sbjct: 250 FVDALKLFVLMFKTETRPN 268
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++D YA+ ++ +F + ++ SW +I Y+ + AL+ F++ K GT
Sbjct: 309 SLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGT-P 367
Query: 231 DQVTMATVLSACAHLGALDLGR 252
D+VT VLSAC H G ++ G
Sbjct: 368 DEVTFVNVLSACVHAGLVEEGE 389
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 36/191 (18%)
Query: 150 NKFFESRRV--SRRLFDE-MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
N + ++ V + +L DE + +WN ++ AY + ++ LF+KMP D SW
Sbjct: 16 NTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWN 75
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC-----------AHLGALDL 250
M++ + + + F + ++G + T++T+L A H A L
Sbjct: 76 IMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHL 135
Query: 251 GRGIQIYCRS--------------LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
G + ++ S LGR+ F + K++ WN++ + G +A
Sbjct: 136 GHYLNVFVGSSLIRAYAGLKEEEALGRA---FNDISMKDVTSWNALVSSYMELGKFVDAQ 192
Query: 297 GMFDRMTYENV 307
FD+M N+
Sbjct: 193 TAFDQMPQRNI 203
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 32/228 (14%)
Query: 111 LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L LRA +HG V K G VF+ ++++D Y K + R V FD + E+
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV----FDLILEKN 381
Query: 171 FATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
WN+M+ Y+ E LF +P + SW T+I Y +N+Q + L+ FN
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR---------GIQ-------------IYCRSLGR 263
SG ++ T ++VL ACA + +LD G GIQ C +G
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT-YENVRPN 310
S VF ++ EKN + W + + LA GFA E+L +F+ M V PN
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 35/201 (17%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++ G V K GF + V +++ + S + E ++RR+FD M +R +W ++
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLI---TLSLRMGEID-LARRVFDRMEKRDVVSWTAIL 257
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
DAY +L +F++MP + SW+ MI YSQ+ EAL F+K + G +
Sbjct: 258 DAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNIS 317
Query: 234 TMATVLSACAHLGALDLGRGIQ--------------------IYCR----SLGRSLLVFF 269
A LSA A L AL G I +YC+ GR LVF
Sbjct: 318 CFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR--LVFD 375
Query: 270 KLREKNLLCWNSITEALAIHG 290
+ EKN++CWNS+ +I+G
Sbjct: 376 LILEKNVVCWNSMVGGYSING 396
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 86 MQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
+ + NV H FSS R+ IA L +L Q+ K S + V
Sbjct: 37 ITQGNVLHAHLIKTGFSSQRY----IAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNC 92
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA---YARLAELL--FNKMPAWD 196
M+ Y ++R LFDEMPER +W+ +I Y R+ E + F + P +
Sbjct: 93 MISAYVQWGNLVQARL----LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQN 148
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SWT I+ + +N EAL F + +SG + VT +V+ AC LG D G G+ I
Sbjct: 149 VVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELG--DFGLGMSI 206
Query: 257 ----------YCRSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFA 292
+ S+ SL+ VF ++ +++++ W +I +A G
Sbjct: 207 LGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDL 266
Query: 293 HEALGMFDRMTYEN 306
EA +FD M N
Sbjct: 267 REARRIFDEMPERN 280
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 31/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG++ K G +FV TA+ D Y+ S++V F+ MPE+
Sbjct: 470 VHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV----FERMPEK------------- 512
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSA 241
N++ SWT MI +++ E+L F + ++ S +++ + +VL A
Sbjct: 513 -------NEI------SWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFA 559
Query: 242 CAHLGALDLG 251
C+H G +D G
Sbjct: 560 CSHCGLVDKG 569
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 131/311 (42%), Gaps = 86/311 (27%)
Query: 82 VFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLYMLRA---------------------EV 118
+F P+ F+++ +S R L ++ FY+ ML A +
Sbjct: 70 IFLHTHNPSPFMFNTIIMASSR-TLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSL 128
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------------- 158
L +H V K G VFV M+ YS + +R+V
Sbjct: 129 LGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGF 188
Query: 159 --------SRRLFDEMPERKFATWNTMIDAYA---RLAEL--LFNKMPAWDIRSWTTMIT 205
+R++FD MP + +WN MI YA R+ E LF++MP D SW+ M++
Sbjct: 189 SNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVS 248
Query: 206 SYSQNKQFREALDAFNKTKKSGTGS----DQVTMATVLSACAHLGALDLGRGIQIYCR-- 259
YSQ EALD F + TG ++ + + +SACA L AL+ GR + Y +
Sbjct: 249 GYSQLGMCNEALDLFMEMV---TGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEK 305
Query: 260 ------SLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
+LG LL VF + E+N+ WNS+ LA++G EAL +F
Sbjct: 306 KLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLF 365
Query: 300 DRMTYENVRPN 310
+M + PN
Sbjct: 366 WKMQFVGPSPN 376
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 177 MIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D Y + +L FN M ++ SW +MI + N +EAL F K + G +
Sbjct: 317 LLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPN 376
Query: 232 QVTMATVLSACAHLGALDLGR 252
+T +L+ C+H G + GR
Sbjct: 377 AITFIALLTGCSHSGLITEGR 397
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 54/212 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K+G+ S +FV ++V+ YS ++ +++RV FDEMP+R
Sbjct: 179 VHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRV----FDEMPQR------------- 221
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQF-REALDAFNKTK-KSGTGSDQVTMATVLS 240
D+ +WT+++ Y+ +F EAL FN ++ + ++LS
Sbjct: 222 -------------DVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILS 268
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
ACAHLGALD G+ I +Y C + + VF L +++LL
Sbjct: 269 ACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLT 328
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W S+ L++HG E L F M E +P+
Sbjct: 329 WTSMISGLSMHGLGAECLWTFSEMLAEGFKPD 360
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 54/198 (27%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K+GF S ++V ++++ S + ++R+V
Sbjct: 382 VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKV------------------------ 417
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF--NKTKKSGTGSDQVTMATVLS 240
FN+M D+ SWT+++ Y+++ + A F N ++ + VLS
Sbjct: 418 ------FNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLS 471
Query: 241 ACAHLGALDLGRGIQIYCRSLG--------RSLL--------------VFFKLREKNLLC 278
ACAHLGALD G I +Y +G +L+ VF + ++++L
Sbjct: 472 ACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLS 531
Query: 279 WNSITEALAIHGFAHEAL 296
+ S+ L+ HG +AL
Sbjct: 532 FTSMISGLSYHGLGKDAL 549
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ + +F+ + D+ +WT+MI+ S + E L F++ G D
Sbjct: 301 LIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPD 360
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+T+ VL+ C+H G ++ + ++V E NL NS+ ++
Sbjct: 361 DITLLGVLNGCSHSGLVE---------EEIVHGMVVKSGF-ESNLYVGNSVINMCSVFAR 410
Query: 292 AHEALGMFDRMTYENV 307
+A +F++M+ +V
Sbjct: 411 MEDARKVFNQMSERDV 426
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 39/224 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K GF+ +F + A++ Y ++ + LF EM + +WN +I ++A
Sbjct: 297 IHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEK----LFHEMKVKNLVSWNALISSFA 352
Query: 183 ------RLAELL--FNKMPAW-----DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ELL KM A+ ++ +W+ +I ++ E+L+ F K + +
Sbjct: 353 ESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVK 412
Query: 230 SDQVTMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLV 267
++ VT+A+VLS CA L AL+LGR I +Y C S +V
Sbjct: 413 ANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMV 472
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F KL ++ + WNS+ HG +AL F+ M RP+G
Sbjct: 473 FEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDG 516
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 145/340 (42%), Gaps = 68/340 (20%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVF---PQMQEPN 90
L++C+ I+ + V++ V T A F++ + +S SR+ + VF P N
Sbjct: 45 LRQCNGIQHSKQVHSATVVTGAYCSAFVSARLVSI-YSRYGLVSDARKVFGSAPFECYSN 103
Query: 91 VFVYHAF--SSLRHPLQAIAFYLY-----------------MLRAEV------LLTTVHG 125
++++ +++ H A LY +LRA + +H
Sbjct: 104 FLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHC 163
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA--- 182
V + GF + + V ++ Y+ + ++R+V FD+M + +WNTM+ YA
Sbjct: 164 HVVQFGFQNHLHVGNELIGMYAKLERMDDARKV----FDKMRIKSVVSWNTMVSGYAYNY 219
Query: 183 --RLAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A +F++M + +WT++++S+++ E + F K + G G +A
Sbjct: 220 DVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLA 279
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK 274
VLS CA L L+ G+ I Y +G + +F +++ K
Sbjct: 280 VVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVK 339
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRM----TYENVRPN 310
NL+ WN++ + A G +AL + ++ Y ++PN
Sbjct: 340 NLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPN 379
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y + ++F K+ D SW +MI Y + ++AL FN KSG
Sbjct: 454 NGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYR 513
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VT LSAC+H G + G
Sbjct: 514 PDGVTFIAALSACSHAGLVAEGH 536
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 77/279 (27%)
Query: 68 FCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
C S + FP + ++ + FSS+ + F+ ++LR
Sbjct: 2 LCASSYQRFKSVSFCFPPL---SINFHSQFSSITYDEDLPDFFDHLLRQ----------- 47
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS-----------RRLFDEMP---ERKFAT 173
NG V +A V +Y + F +R VS R++F P F
Sbjct: 48 -CNGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLL 106
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
WN++I A N + I EAL + K + G D
Sbjct: 107 WNSIIRA---------NVYHGYCI-----------------EALQLYGKMRNYGVLGDGF 140
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL--------------VFFKL 271
T +L A ++LGA ++ + + + +G L+ VF K+
Sbjct: 141 TFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKM 200
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R K+++ WN++ A + + A MF +M E V PN
Sbjct: 201 RIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPN 239
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 158/370 (42%), Gaps = 80/370 (21%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQ-----LKKCSS----IKELECVYATIVKTNANLDCF 60
++S K F S IR + ++ L K SS +K++ C IV +L +
Sbjct: 110 VSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHC--HIIVSGCLSLGNY 167
Query: 61 LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA 116
L + F +F VF +M P+V ++ ++ L+A+ Y M+
Sbjct: 168 LWNSLVKFYMELGNF-GVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSD 226
Query: 117 EV---------------------LLTTVHGQVWKNG--FSSPVFVQTAMVDNYSYSNKFF 153
+ L VHG + + G +SS + + A++D Y F
Sbjct: 227 GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMY------F 280
Query: 154 ESRR--VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
+ + +++R FD M ++ +WNTM+ + RL ++ +F++MP D+ SW +++
Sbjct: 281 KCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFG 340
Query: 207 YSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------- 253
YS+ + RE + T D+VTM +++S A+ G L GR
Sbjct: 341 YSKKGCDQRTVRELF--YEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQ 398
Query: 254 -----------IQIYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
I +YC+ + R+ +VF EK++ W S+ LA HG +AL +F
Sbjct: 399 LKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFG 458
Query: 301 RMTYENVRPN 310
RM E V PN
Sbjct: 459 RMQEEGVTPN 468
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 85/325 (26%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF-HFIDYTILVFPQM-QEPNV 91
L+ C+S + + V A I++ N D F + I F + +D L+F PNV
Sbjct: 41 LENCNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNV 100
Query: 92 FVYHAF----------------SSLRHPLQAI-AFYLYMLRAEVLLTTV---HGQVWKNG 131
FVY+ S +RH + +LY+++A L+ V H + +G
Sbjct: 101 FVYNTMISAVSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHCHIIVSG 160
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AE 186
S + NY WN+++ Y L AE
Sbjct: 161 CLS--------LGNY--------------------------LWNSLVKFYMELGNFGVAE 186
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F +MP D+ S+ MI Y++ EAL + K G D+ T+ ++L C HL
Sbjct: 187 KVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLS 246
Query: 247 ALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
+ LG+G+ + C+ G + F +++K++ WN++
Sbjct: 247 DIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTM 306
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
G A +FD+M ++
Sbjct: 307 VVGFVRLGDMEAAQAVFDQMPKRDL 331
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + A ++F D+ WT+MIT + + ++AL F + ++ G
Sbjct: 407 SALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVT 466
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT+ VL+AC+H G ++ G
Sbjct: 467 PNNVTLLAVLTACSHSGLVEEG 488
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 32/228 (14%)
Query: 111 LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L LRA +HG V K G VF+ ++++D Y K + R V FD + E+
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLV----FDLILEKN 381
Query: 171 FATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
WN+M+ Y+ E LF +P + SW T+J Y +N+Q + L+ FN
Sbjct: 382 VVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLV 441
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGR---------GIQ-----------IY--CRSLGR 263
SG ++ T ++VL ACA + +LD G GIQ +Y C +G
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT-YENVRPN 310
S VF ++ EKN + W + + LA GFA E+L +F+ M V PN
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 35/201 (17%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L ++ G V K GF + V +++ + S + E ++RR+FD M +R +W ++
Sbjct: 202 LGMSILGLVVKAGFEHYLSVSNSLI---TLSLRMGEID-LARRVFDRMEKRDVVSWTAIL 257
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
DAY +L +F++MP + SW+ MI YSQ+ EAL F+K + G +
Sbjct: 258 DAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNIS 317
Query: 234 TMATVLSACAHLGALDLGRGIQ--------------------IYCR----SLGRSLLVFF 269
A LSA A L AL G I +YC+ GR LVF
Sbjct: 318 CFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR--LVFD 375
Query: 270 KLREKNLLCWNSITEALAIHG 290
+ EKN++CWNS+ +I+G
Sbjct: 376 LILEKNVVCWNSMVGGYSING 396
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 86 MQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
+ + NV H FSS R+ IA L +L Q+ K S + V
Sbjct: 37 ITQGNVLHAHLIKTGFSSQRY----IAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNC 92
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA---YARLAELL--FNKMPAWD 196
M+ Y ++R LFDEMPER +W+ +I Y R+ E + F + P +
Sbjct: 93 MISAYVQWGNLVQARL----LFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQN 148
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SWT I+ + +N EAL F + +SG + VT +V+ AC LG D G G+ I
Sbjct: 149 VVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELG--DFGLGMSI 206
Query: 257 ----------YCRSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFA 292
+ S+ SL+ VF ++ +++++ W +I +A G
Sbjct: 207 LGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDL 266
Query: 293 HEALGMFDRMTYEN 306
EA +FD M N
Sbjct: 267 REARRIFDEMPERN 280
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 31/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG++ K G +FV TA+ D Y+ S++V F+ MPE+
Sbjct: 470 VHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV----FERMPEK------------- 512
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSA 241
N++ SWT MI +++ E+L F + ++ S +++ + +VL A
Sbjct: 513 -------NEI------SWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFA 559
Query: 242 CAHLGALDLG 251
C+H G +D G
Sbjct: 560 CSHCGLVDKG 569
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF+ PV A++D Y+ ++ E+ + LF++MP R +W ++ Y +L
Sbjct: 181 GFNLPV--ANALLDMYTKNDCLEEAVK----LFEQMPARNIISWTILVSGYGLAGQLDKA 234
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LFN+ D+ WT MI + Q+ F EAL F + D+ T+ T+L+ CA+L
Sbjct: 235 RVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANL 294
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GALD G I Y C + +SL VF++++ ++ W +I
Sbjct: 295 GALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAII 354
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
LA +G A AL +F M V+P+G
Sbjct: 355 CGLATNGQAGRALELFQDMQRSKVKPDG 382
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 46/204 (22%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
Y ++LRA +L H K GF + +++++ Y+ + ++R++F
Sbjct: 52 YPFVLRAVGVLKLSVEGRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGRV----DIARKVF 107
Query: 164 DEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
DEMP R WN M+ Y R ++ A+ +
Sbjct: 108 DEMPSRALVLWNMMVRCYIRCG--------------------------RYSAAVALSEQM 141
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
++SG D+VT+ T ++AC+ L LGR I +Y ++ F NL N++
Sbjct: 142 ERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-------FGF---NLPVANALL 191
Query: 284 EALAIHGFAHEALGMFDRMTYENV 307
+ + EA+ +F++M N+
Sbjct: 192 DMYTKNDCLEEAVKLFEQMPARNI 215
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ID Y++ + +F +M D +WT +I + N Q AL+ F ++S
Sbjct: 320 TALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVK 379
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D VT VLSAC H G +D GR
Sbjct: 380 PDGVTFIGVLSACCHGGLVDEGR 402
>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPE 168
VF TAMV Y S E+RRV +R LF+ MP
Sbjct: 234 VFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPC 293
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R +WNT+I Y + ++ LF+ M D SW +I Y+Q + + + K
Sbjct: 294 RNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKM 353
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGI--------------------QIYCR--SL 261
K+ G ++ T LS CA + AL LG+ + ++YC+ S+
Sbjct: 354 KRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSI 413
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
G + VF +++ K+++ WN++ A HGF +AL +FD M +P+
Sbjct: 414 GEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPD 462
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MP R +WNTMI YAR +L LF + P D+ +WT M+ +Y Q+
Sbjct: 191 ARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGML 250
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIYCRSLGRSLLVFFKL 271
EA F++ G ++ +++ +D+ R + + CR++G
Sbjct: 251 DEARRVFDEM----PGKREMAYNVMIAGYVQYKKMDMARELFEAMPCRNVGS-------- 298
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
WN+I +G +A +FD MT +
Sbjct: 299 -------WNTIISGYGQNGDIAQARELFDMMTQRD 326
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 152 FFESRRV--SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ ++RR+ +R LFD MP++ +WN M+ Y R A+L+F+ MP D SW ++
Sbjct: 89 YVKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLL 148
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
Y QN + EA F +V + C G + + LG +
Sbjct: 149 AVYVQNGRLEEARRLF---------ESKVDWELISWNCLMGGYVKR--------KMLGDA 191
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+F + +N + WN++ A G +A +F+ +V
Sbjct: 192 RRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDV 234
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+ A VL VHGQ K G+ + V A+++ Y E+ V
Sbjct: 375 MAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIGEAYDV--------------- 419
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
F +M DI SW TM+ Y+++ R+AL F+ K +G D++
Sbjct: 420 ---------------FERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEI 464
Query: 234 TM 235
TM
Sbjct: 465 TM 466
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
M + + LA +F+ MP ++ SW M+T Y +N++ +A + F+ + D V+
Sbjct: 59 MRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQ----KDAVSWN 114
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+LS G +D + LVF + K+ + WN + +G EA
Sbjct: 115 VMLSGYVRSGCVDEAK-------------LVFDNMPYKDSISWNGLLAVYVQNGRLEEAR 161
Query: 297 GMFD 300
+F+
Sbjct: 162 RLFE 165
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K V V T ++ Y + R +RRLFDEMPER TWN M++ YA
Sbjct: 207 VHGLVVKMFVVGLVIVSTNLMHAYCLCSGV----REARRLFDEMPERNLVTWNVMLNGYA 262
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A LF+ + D+ SW TMI Y Q + REAL+ + ++G G ++V +
Sbjct: 263 KTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVN 322
Query: 238 VLSACAHLGALDLG---------RGIQIY-------------CRSLGRSLLVFFKLREKN 275
++SAC A+ G RG Y C + + L F + +
Sbjct: 323 LVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDH 382
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L WN++T +G AL FD+M +V
Sbjct: 383 LESWNALTAGFIKNGMMDHALKTFDKMHVRDV 414
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 31/212 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++K G F+Q ++++ Y+ + ++ LFD + N M+ Y
Sbjct: 75 IHSLIFKLGLHFNTFIQNSLINMYAKCGDI----KNAQLLFDGFATLDSVSCNIMVSGYV 130
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R ++ LF+ MP S+TTMI + QN FREAL+ F + G + +T+
Sbjct: 131 RNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVN 190
Query: 238 VLSACAHLGALDLGR------------GIQI--------YCRSLG--RSLLVFFKLREKN 275
V+SAC+HLG + R G+ I YC G + +F ++ E+N
Sbjct: 191 VISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERN 250
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L+ WN + A G EA +FD + ++V
Sbjct: 251 LVTWNVMLNGYAKTGLVDEARELFDGICDKDV 282
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K GF F+QT ++ Y+ ++ F+ + +WN + +
Sbjct: 339 LHGTVVKRGFDCYNFIQTTIIYFYAACGMM----DLACLQFEVGVKDHLESWNALTAGFI 394
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ + F+KM D+ SW+TMI+ Y+Q++ + AL+ F+K G ++VTM +
Sbjct: 395 KNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVS 454
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK- 274
V SA A LG L G+ Y C S+ +L F ++R++
Sbjct: 455 VFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEV 514
Query: 275 -NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WN+I LA HG A L +F M +++PN
Sbjct: 515 SSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPN 551
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF+ PV A++D Y+ ++ E+ + LF++MP R +W ++ Y +L
Sbjct: 181 GFNLPV--ANALLDMYTKNDCLEEAVK----LFEQMPARNIISWTILVSGYGLAGQLDKA 234
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LFN+ D+ WT MI + Q+ F EAL F + D+ T+ T+L+ CA+L
Sbjct: 235 RVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANL 294
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GALD G I Y C + +SL VF++++ ++ W +I
Sbjct: 295 GALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAII 354
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
LA +G A AL +F M V+P+G
Sbjct: 355 CGLATNGQAGRALELFQDMQRSKVKPDG 382
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 46/204 (22%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
Y ++LRA +L H K GF + +++++ Y+ + ++R++F
Sbjct: 52 YPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRV----DIARKVF 107
Query: 164 DEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
DEMP R WN M+ Y R W + + S+ +
Sbjct: 108 DEMPSRALVLWNMMVRCYIRCG--------------WYSAAVALSE------------QM 141
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283
++SG D+VT+ T ++AC+ L LGR I +Y ++ F NL N++
Sbjct: 142 ERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-------FGF---NLPVANALL 191
Query: 284 EALAIHGFAHEALGMFDRMTYENV 307
+ + EA+ +F++M N+
Sbjct: 192 DMYTKNDCLEEAVKLFEQMPARNI 215
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y++ + +F +M D +WT +I + N Q AL+ F ++S
Sbjct: 321 ALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKP 380
Query: 231 DQVTMATVLSACAHLGALDLGR 252
D VT VLSAC H G +D GR
Sbjct: 381 DGVTFIGVLSACCHGGLVDEGR 402
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 125/274 (45%), Gaps = 53/274 (19%)
Query: 72 RFHFIDYTILVFPQMQEPNVF--------VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV 123
RF +D +F +M++ NV + A + A Y +++ +V + T
Sbjct: 189 RFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDT- 247
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
+ TA+V Y+ + ++R F +M R M+ Y++
Sbjct: 248 -------------HLLTALVTMYAGAG----CMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A+++F++ D+ WTTMI++Y ++ +EAL F + SG D V+M +V
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 239 LSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNL 276
+SACA+LG LD + I +Y C L + VF K+ +N+
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+S+ AL++HG A +AL +F RM ENV PN
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPN 444
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 140/351 (39%), Gaps = 66/351 (18%)
Query: 17 SFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKT--NANLDCFLAKQFISFCTSRFH 74
+ P ++ + I +L C S+ ++ ++A I++T N L+ FL F +S
Sbjct: 2 TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFL---FNLSVSSSSI 58
Query: 75 FIDYTILVFPQM-QEPNVFVYHAF----SSLRHPLQAIAFY---------------LYML 114
+ Y + VF + P V++ F S P I FY L +L
Sbjct: 59 NLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPIL 118
Query: 115 RAEVLLTTV------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
+A ++ + HG +K FV+T +D Y+ + +R +FDEM
Sbjct: 119 KAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRI----NYARNVFDEMSH 174
Query: 169 RKFATWNTMIDAYARLAEL-----LF------NKMPAWDIRSWTTMITSYSQNKQFREAL 217
R TWNTMI+ Y R + LF N MP I + N ++ A+
Sbjct: 175 RDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAI 234
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG----------------IQIY--CR 259
F ++ D + +++ A G +D+ R + Y C
Sbjct: 235 YEF--LIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCG 292
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L + ++F + +K+L+CW ++ A + EAL +F+ M ++P+
Sbjct: 293 RLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPD 343
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E + + N +I+ YA+ L +F KMP ++ SW++MI + S + + +AL F +
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFAR 435
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
K+ ++VT VL C+H G ++ G+ I
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKI 467
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 27/185 (14%)
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207
E+ + +R L E + +++ Y + A F++M D+ +W+TMI Y
Sbjct: 233 LETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGY 292
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------- 257
+QN + E+L+ F + K + ++VT+ VLSACA LG+ +LG I +
Sbjct: 293 AQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTS 352
Query: 258 ------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C +GR+ VF ++ K ++ WNS+ LA++GFA +A+ ++ MT E
Sbjct: 353 YLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEE 412
Query: 306 NVRPN 310
+V+PN
Sbjct: 413 DVQPN 417
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 30/214 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH G +FVQTA+VD Y+ + + ++FDEMP + N +I Y+
Sbjct: 107 VHCHAIVRGLLGDIFVQTALVDFYAKNGDM----DCAVKVFDEMPVKDPIPMNCLITGYS 162
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ ++ LF+ M SW +MI Y+ +++EAL F + G + +T+AT
Sbjct: 163 KSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIAT 222
Query: 238 VLSACAHLGALDLGR---------------------GIQIYCRSLGRSLLVFFKLREKNL 276
+ S CA G L+ G+ + + C+++ + F +++++++
Sbjct: 223 MFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDV 282
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ A +G HE+L +F+RM + +PN
Sbjct: 283 VAWSTMIAGYAQNGRPHESLELFERMKATSCKPN 316
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 57/185 (30%)
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+R A LF+ +P T+I++ S+ +E LDAF+ + G+ + V+ +
Sbjct: 35 SRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKS 94
Query: 242 CAHLGALDLGRGIQIYCRSLGRSL---------LVFFKLREKNLLC-------------- 278
CA L A G+ Q++C ++ R L LV F + ++ C
Sbjct: 95 CAILAASRQGK--QVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPI 152
Query: 279 --------------------------------WNSITEALAIHGFAHEALGMFDRMTYEN 306
WNS+ A G EAL +F RM E
Sbjct: 153 PMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEG 212
Query: 307 VRPNG 311
RPN
Sbjct: 213 ARPNA 217
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +FN+M + +W +M+ + N ++A+ + + +
Sbjct: 356 SALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQ 415
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+++T +L+AC H G +D G
Sbjct: 416 PNEITFVALLTACTHAGLVDQG 437
>gi|242073008|ref|XP_002446440.1| hypothetical protein SORBIDRAFT_06g016100 [Sorghum bicolor]
gi|241937623|gb|EES10768.1| hypothetical protein SORBIDRAFT_06g016100 [Sorghum bicolor]
Length = 349
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 32/197 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWD 196
MVD Y ++RLFDEMPER ++I YA+ +A LLF+K+ D
Sbjct: 12 MVDGYVKCGDL----EGAKRLFDEMPERTATACTSLIGGYAKTGNMEIARLLFDKLEDRD 67
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW+ MI+ Y+QN EAL F++ + G D++ + ++SAC+ LG + L R I+
Sbjct: 68 LFSWSVMISGYAQNGYPGEALRTFDEFQGQGIHPDELLVVGLMSACSQLGNIRLARWIED 127
Query: 257 Y-----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
Y C +L R+ ++F + +++ + S+ + +HG A+
Sbjct: 128 YVTKYSIDMKNAHVLAGLVNMNAKCGNLERATVLFESMPVRDVFSYCSLMQGHCLHGSAN 187
Query: 294 EALGMFDRMTYENVRPN 310
+A+ +F +M E + P+
Sbjct: 188 KAVELFSQMLLEGLSPD 204
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +LF MP D+ S+ +++ + + +A++ F++ G D VL+AC+H
Sbjct: 158 ATVLFESMPVRDVFSYCSLMQGHCLHGSANKAVELFSQMLLEGLSPDNAAFTVVLTACSH 217
Query: 245 LGALD 249
G ++
Sbjct: 218 AGLVE 222
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 27/185 (14%)
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207
E+ + +R L E + +++ Y + A F++M D+ +W+TMI Y
Sbjct: 233 LETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGY 292
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------- 257
+QN + E+L+ F + K + ++VT+ VLSACA LG+ +LG I +
Sbjct: 293 AQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTS 352
Query: 258 ------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
C +GR+ VF ++ K ++ WNS+ LA++GFA +A+ ++ MT E
Sbjct: 353 YLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEE 412
Query: 306 NVRPN 310
+V+PN
Sbjct: 413 DVQPN 417
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 30/214 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH G +FVQTA+VD Y+ + + ++FDEMP + N +I Y+
Sbjct: 107 VHCHAIVRGLLGDIFVQTALVDFYAKNGDM----DCAVKVFDEMPVKDPIPMNCLITGYS 162
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ ++ LF+ M SW +MI Y+ +++EAL F + G + +T+AT
Sbjct: 163 KSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIAT 222
Query: 238 VLSACAHLGALDLGR---------------------GIQIYCRSLGRSLLVFFKLREKNL 276
+ S CA G L+ G+ + + CR++ + F +++++++
Sbjct: 223 MFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDV 282
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ A +G HE+L +F+RM + +PN
Sbjct: 283 VAWSTMIAGYAQNGRPHESLELFERMKATSCKPN 316
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 57/185 (30%)
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+R A LF+ +P T+I++ S+ +E LDAF+ + G+ + V+ +
Sbjct: 35 SRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKS 94
Query: 242 CAHLGALDLGRGIQIYCRSLGRSL---------LVFFKLREKNLLC-------------- 278
CA L A G+ Q++C ++ R L LV F + ++ C
Sbjct: 95 CAILAASRQGK--QVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPI 152
Query: 279 --------------------------------WNSITEALAIHGFAHEALGMFDRMTYEN 306
WNS+ A G EAL +F RM E
Sbjct: 153 PMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEG 212
Query: 307 VRPNG 311
RPN
Sbjct: 213 ARPNA 217
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + + +FN+M + +W +M+ + N ++A+ + + +
Sbjct: 356 SALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQ 415
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+++T +L+AC H G +D G
Sbjct: 416 PNEITFVALLTACTHAGLVDQG 437
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 53/211 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K G S +FVQ A++ Y Y S ++ ++FDEM ER
Sbjct: 106 LHSLIVKYGLDSDIFVQNALICVYGYCG----SLEMAVKVFDEMSER------------- 148
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSA 241
D SW+T+I S+ N EALD F K + + D+VTM +V+SA
Sbjct: 149 -------------DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISA 195
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
+HLG L+LGR ++ + C S+ S++VF K+ +N+L W
Sbjct: 196 ISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTW 255
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ L +HG + EAL MF M V+P+
Sbjct: 256 TALINGLGVHGRSTEALAMFHSMRKSGVQPD 286
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +ID ++R + +F KM ++ +WT +I + + EAL F+ +KS
Sbjct: 222 ALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKS 281
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
G D VT + VL AC+H G + G I R + R + L + + + L
Sbjct: 282 GVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYR--------MDPLLDHYGCMVDIL 333
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
G +EA +RM ++PN
Sbjct: 334 GRAGLLNEAYDFVERMP---MKPN 354
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 24/143 (16%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQF--REALDAFNKTKKSGTGSDQVTMATVLSAC 242
A +F+++P+ D ++ T+I S+S+ F +L F + +G D T VL AC
Sbjct: 41 ARYVFSRIPSPDTIAYNTIIRSHSR---FFPSHSLFYFFSMRSNGIPLDNFTFPFVLKAC 97
Query: 243 A------HLGALDLGRGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSIT 283
+ HL +L + G+ YC SL ++ VF ++ E++ + W+++
Sbjct: 98 SRLQINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVI 157
Query: 284 EALAIHGFAHEALGMFDRMTYEN 306
+ +G+A EAL +F++M E+
Sbjct: 158 ASFLNNGYASEALDLFEKMQLED 180
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL- 184
++ G S V+ T+++ + N + R V + N ++D YA+
Sbjct: 745 EMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCG 804
Query: 185 ----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
A L+F+++P DI SW TMI YS+N EAL F + +K + D +TMA +L
Sbjct: 805 SMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKE-SRPDGITMACLLP 863
Query: 241 ACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLC 278
AC L AL++GRGI + C SL + L+F + EK+L+
Sbjct: 864 ACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLIT 923
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W + +HG +EA+ F +M ++P+
Sbjct: 924 WTVMISGCGMHGLGNEAIATFQKMRIAGIKPD 955
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 28/164 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NT++D Y++ L F KM + SWT++I +Y + + +A+ F + + G
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D +M +VL ACA +LD GR + Y C S+ + LV
Sbjct: 753 PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLV 812
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
F ++ K+++ WN++ + + +EAL +F M E+ RP+G
Sbjct: 813 FSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDG 855
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + +NG+SS + V A++D Y +R
Sbjct: 877 IHGCILRNGYSSELHVANALIDMYVKCGSLVHAR-------------------------- 910
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LLF+ +P D+ +WT MI+ + EA+ F K + +G D++T ++L AC
Sbjct: 911 ----LLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYAC 966
Query: 243 AHLGALDLGRG 253
+H G L+ G G
Sbjct: 967 SHSGLLNEGWG 977
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 56/212 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--SRRLFDEMPERKFATWNTMIDA 180
+HG V+K GF S V +++ Y F+S V + +LFDE+ +R
Sbjct: 575 IHGCVYKLGFGSYNTVVNSLIATY------FKSGEVDSAHKLFDELGDR----------- 617
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
D+ SW +MI+ N AL+ F + G D T+ ++
Sbjct: 618 ---------------DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662
Query: 241 ACAHLGALDLGRGIQ--------------------IY--CRSLGRSLLVFFKLREKNLLC 278
ACA++G+L LGR + +Y C +L ++ F K+ +K ++
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W S+ A G +A+ +F M + V P+
Sbjct: 723 WTSLIAAYVREGLYDDAIRLFYEMESKGVSPD 754
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
W M++ Y++ +RE++ F K +K G + T + +L A LG + + I
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580
Query: 260 SLG--------RSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALG 297
LG SL+ +F +L +++++ WNS+ ++GF+H AL
Sbjct: 581 KLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALE 640
Query: 298 MFDRM 302
F +M
Sbjct: 641 FFVQM 645
>gi|255553391|ref|XP_002517737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543135|gb|EEF44669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 299
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + K+GFS V + T+++D YS + ++ V F EMPER N++I
Sbjct: 60 VHCLILKHGFSRDVIIMTSVIDMYSKCSAINDAYHV----FGEMPERDIVATNSLIYGLC 115
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R A +FN M + SW ++I+ +QN + AL F + + G D +TM +
Sbjct: 116 RCHFTSKAIEMFNNMDERNKGSWNSLISGLAQNSKESIALAFFERMRLEGAKVDVITMVS 175
Query: 238 VLSACAHLGALDLGR---------GIQIY-------------CRSLGRSLLVFFKLREKN 275
VLS CA L AL G G + Y C S+ + L F +L KN
Sbjct: 176 VLSICAELAALINGTKIHGLVIKYGFEFYLPVGNAIVDMYAKCGSMENACLCFKQLAIKN 235
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ + HG EAL D M + V PN
Sbjct: 236 VVSWTTLIVSYGKHGQGVEALKALDAMERDGVTPN 270
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ L F ++ ++ SWTT+I SY ++ Q EAL A + ++ G
Sbjct: 209 NAIVDMYAKCGSMENACLCFKQLAIKNVVSWTTLIVSYGKHGQGVEALKALDAMERDGVT 268
Query: 230 SDQVT 234
+++T
Sbjct: 269 PNKIT 273
>gi|255580653|ref|XP_002531149.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529262|gb|EEF31234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 311
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 34/217 (15%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HGQV KNG + VQ +++ Y ++R++FDEM + +WN++++AYA
Sbjct: 11 HGQVLKNGVDCILPVQNSLIHFYGCCGLV----ELARKVFDEMSQADLVSWNSIVNAYAN 66
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ EL +FN M + SW MI Y + +L F K SG + TM +V
Sbjct: 67 VGELDTAHDIFNIMLGKTVVSWNVMIYGYLKGNNPGCSLMLFRKMVNSGLRGNDKTMVSV 126
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
LSAC L GR I + C+ + + +F + +NL
Sbjct: 127 LSACGKSARLTEGRSIHGFLIRTSLNFSVILLTSLMDMYSKCQKVELARSIFDSMVHRNL 186
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM---TYENVRPN 310
+CWN++ IHG + L +F M T E + P+
Sbjct: 187 ICWNAMILGHCIHGKPADGLDLFAEMVNSTGETILPD 223
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
++HG + + + V + T+++D YS K ++R +FD M R WN MI
Sbjct: 141 SIHGFLIRTSLNFSVILLTSLMDMYSKCQKV----ELARSIFDSMVHRNLICWNAMI--- 193
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L + K PA + + M+ S + D+VT V+SA
Sbjct: 194 --LGHCIHGK-PADGLDLFAEMVNSTGETIL-----------------PDEVTYIGVISA 233
Query: 242 CAHLGALDLGR 252
CA G L GR
Sbjct: 234 CARAGLLTEGR 244
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 27/178 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+FDEMP ++N ++D Y + LA F +MP D SW T++ ++ ++ E
Sbjct: 34 RVFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEE 93
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL- 266
A+ F++ + G D + +A VLS CA LGAL+ GR + Y R L L+
Sbjct: 94 AVLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGLVD 153
Query: 267 -------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF E+N+ WN++ LA+HG L FDRM E RP+G
Sbjct: 154 LYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDG 211
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 131/311 (42%), Gaps = 86/311 (27%)
Query: 82 VFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLRA---------------------EV 118
+F P+ F+++ +S R L ++ FY+ ML A +
Sbjct: 68 IFLHTHNPSPFMFNTIIMASSR-TLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSL 126
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV-------------------- 158
L +H V K G VFV M+ YS + +R+V
Sbjct: 127 LGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGF 186
Query: 159 --------SRRLFDEMPERKFATWNTMIDAYA---RLAEL--LFNKMPAWDIRSWTTMIT 205
+R++FD MP + +WN MI YA R+ E LF++MP D SW+ M++
Sbjct: 187 SNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVS 246
Query: 206 SYSQNKQFREALDAFNKTKKSGTGS----DQVTMATVLSACAHLGALDLGRGIQIYCR-- 259
YSQ EALD F + TG ++ + + +SACA L AL+ GR + Y +
Sbjct: 247 GYSQLGMCNEALDLFMEMV---TGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEK 303
Query: 260 ------SLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
+LG LL VF + E+N+ WNS+ LA++G EAL +F
Sbjct: 304 KLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALF 363
Query: 300 DRMTYENVRPN 310
+M + PN
Sbjct: 364 WKMQFVGPSPN 374
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 177 MIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D Y + +L FN M ++ SW +MI + N +EAL F K + G +
Sbjct: 315 LLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPN 374
Query: 232 QVTMATVLSACAHLGALDLGR 252
+T +L+ C+H G + GR
Sbjct: 375 AITFIALLTGCSHSGLITEGR 395
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 33/243 (13%)
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
H SL L+++A + A L VH + G + + V A++ ++
Sbjct: 89 HTLPSL---LKSLALSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHA---GLLG 142
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+ L +T+NT+I A+AR + LF++MP + SW+ M+ Y Q
Sbjct: 143 RLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQ 202
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------L 261
REAL F++ + G D + VL+ACA LGAL+ G+ + Y ++ L
Sbjct: 203 AGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFL 262
Query: 262 GRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
G +L+ VF +++KN+L W ++ + LA+HG ++L +F +M V
Sbjct: 263 GTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGV 322
Query: 308 RPN 310
+P+
Sbjct: 323 KPD 325
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ E+ +F M ++ +WTTMI + + + ++L F++ + SG
Sbjct: 265 ALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKP 324
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D + L AC H G +D G R L S++ + ++ K + + + + LA +G
Sbjct: 325 DDIAFIGALCACTHTGLVDKG-------RELFNSMVNNYGIKPK-IEHYGCMVDLLARNG 376
Query: 291 FAHEALGMFDRM 302
EA M ++M
Sbjct: 377 LLSEARDMVEKM 388
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 35/220 (15%)
Query: 123 VHGQVWKNGFS---SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H + K+G S V V T+++ Y+ + ++R+V FD MP+R TWN ++D
Sbjct: 79 IHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKV----FDGMPDRTVVTWNVLLD 134
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQV 233
A R +L +F +MP ++ SW T+I +++N +EA+D F T G D+
Sbjct: 135 ALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEA 194
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM +SA +G L +G+ Y C S+G + F +
Sbjct: 195 TMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSV 254
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
KN+ W S+ A HG +AL +F M + PNG
Sbjct: 255 TTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNG 294
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
++ WT++I ++ + Q +AL F + ++ G + VT VL+AC H G + G
Sbjct: 258 NVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEG 313
>gi|414884311|tpg|DAA60325.1| TPA: hypothetical protein ZEAMMB73_267423 [Zea mays]
Length = 460
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 32/202 (15%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPER-KFATWNTMIDAYAR-----LAELLFNK 191
V A+V Y+ + ++RRV F+EMP ++NT++ AY +A +F
Sbjct: 120 VANALVSLYARHTRLGDARRV----FEEMPSAPDVVSYNTLMHAYVNTGSVAVAREVFEG 175
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
MP D SW T+I ++ Q EA+ F++ + G D V +A VLS CA LGALD G
Sbjct: 176 MPVRDATSWGTVIAGSAKAGQLEEAMALFDRMLEEGFRPDDVALAAVLSCCAQLGALDKG 235
Query: 252 RGIQ--------------------IY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
R + +Y C + + +F +++N+ WN++ LA++
Sbjct: 236 REVHGLVKLSRPRPNVFLCTGLVDLYAKCGCVEAAREMFEACQDRNVYTWNALIVGLAMY 295
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G AL F RM + +RP+G
Sbjct: 296 GHGTVALEYFHRMVADGIRPDG 317
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + + G S V V TA+V+ Y+ E+R+V F+ M R W+T+I AYA
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKV----FNAMKNRDAVAWSTLIGAYA 385
Query: 183 --------RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQV 233
R A +F+++ + D SW MIT+Y QN A+ F + T +G D V
Sbjct: 386 SNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAV 445
Query: 234 TMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKL 271
T VL ACA LG L + I +Y C SL + +F
Sbjct: 446 TFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAA 505
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+EK ++ W ++ A + +G EAL +F M E V+P+
Sbjct: 506 KEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPD 544
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 55/205 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ NGF + + V TA+++ Y E+R V
Sbjct: 229 IHAEIVANGFDTDLVVATALINMYGKCGSSHEAREV------------------------ 264
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
F+KM D+ SW MI Y N F EAL+ + K G + T ++L AC
Sbjct: 265 ------FDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
+ + AL GR + + C SL + VF ++ ++ + W+
Sbjct: 319 SSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWS 378
Query: 281 SITEALAIHGF---AHEALGMFDRM 302
++ A A +G+ A +A +FDR+
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRL 403
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ E + + ++ + E NT+I+ YAR AE LF + SWT M+
Sbjct: 458 GRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMV 517
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
++SQ ++ EALD F + G D VT ++L C H G+L+ G
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQG 564
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 35/194 (18%)
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL-----FNKMPAW---DIR 198
S E R + R+ ER N +I Y + L+ F M W ++
Sbjct: 18 SSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMD-WRQRNVV 76
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--- 255
SW MI +Y+QN EAL + + G G+D VT +VL AC+ L GR I
Sbjct: 77 SWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRV 133
Query: 256 -----------------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+Y R S+G + +F L+ ++ WN++ A + G AL
Sbjct: 134 FYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGAL 193
Query: 297 GMFDRMTYENVRPN 310
+F M +V+PN
Sbjct: 194 RIFKEMKC-DVKPN 206
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 91/197 (46%), Gaps = 31/197 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H +V+ +G S + A+V Y+ F S ++R+F + R +WN +I A++
Sbjct: 129 IHNRVFYSGLDSFQSLANALVTMYAR----FGSVGDAKRMFQSLQTRDETSWNAVILAHS 184
Query: 183 RLAEL-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ + +F +M D++ ++ +I+ +S + E + +G +D V
Sbjct: 185 QSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243
Query: 234 TMATVLSACAHLGALDLGRGIQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+AT L I +Y C S + VF K+++++++ WN + ++G
Sbjct: 244 -VATAL--------------INMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGD 288
Query: 292 AHEALGMFDRMTYENVR 308
HEAL ++ ++ E +
Sbjct: 289 FHEALELYQKLDMEGFK 305
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 32/198 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP +
Sbjct: 249 MISGYATSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKN 304
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD------ 249
+ SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++
Sbjct: 305 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 364
Query: 250 -------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
LG I ++ C +GR+ +F+K+ + ++ W ++ A +G
Sbjct: 365 SFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCR 424
Query: 294 EALGMFDRMTYENVRPNG 311
EAL +++ M E V +G
Sbjct: 425 EALLVYNNMCREGVELDG 442
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 71/250 (28%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVD-NYSYSNKFFESRRVSRRL 162
+ ++LRA LL VHGQ+ + GF S VFVQ A++D Y +R++
Sbjct: 113 FTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYRCGGGGAGGVGAARQV 172
Query: 163 FDE-------------------------------MPERKFATWNTMIDAYARLAEL---- 187
FDE MPER +WNT++ +AR ++
Sbjct: 173 FDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVTAR 232
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F++MP+ + SW MI+ Y+ + A F++ + D V+ ++SA A +G
Sbjct: 233 TVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQ----KDVVSWTAMVSAYAKIG 288
Query: 247 ALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDR 301
LD + + F + KNL+ WN++ I G+ H EAL F
Sbjct: 289 DLDTAKEL-------------FDHMPVKNLVSWNAM-----ITGYNHNSRYDEALRTFQL 330
Query: 302 MTYEN-VRPN 310
M E RP+
Sbjct: 331 MMLEGRFRPD 340
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A N +ID +A+ ++ +F KM I +WTTMI+ ++ N REAL +N +
Sbjct: 377 ALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCRE 436
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI 254
G D L+AC H G L G I
Sbjct: 437 GVELDGTVFIAALAACTHGGLLQEGWSI 464
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
V+R++FDEMP + W +M+ Y EL LF + P D+ WT MI Y Q
Sbjct: 10 VARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNH 69
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
F EA+ F + + D+ + +L+ CA +GAL+ G I Y
Sbjct: 70 FDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTS 129
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + ++L +F LREK+ W SI LA++G +AL +F +M P+
Sbjct: 130 LIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPD 189
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 44/185 (23%)
Query: 72 RFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127
+F+ D + +F +MQ +P+ FV A + + A+ T +HG +
Sbjct: 66 QFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQG----------TWIHGYI 115
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
+ G V T++++ YS ++ R+
Sbjct: 116 DEKGIPVDAVVGTSLIEMYSKCGCIEKALRI----------------------------- 146
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
F + D +WT++I + N + +AL+ F+K K+ D+VT VLSAC+H G
Sbjct: 147 -FCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGL 205
Query: 248 LDLGR 252
++ GR
Sbjct: 206 VEEGR 210
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 53/211 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG +GF VFV ++++D YS + ++R+V FD +P R W
Sbjct: 253 IHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKV----FDRIPHRNTVCW-------- 300
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
T+MI Y+Q+ F+EA++ F + + G +D T+A VLSAC
Sbjct: 301 ------------------TSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSAC 342
Query: 243 AHLGALDLGRGIQIYCR----------------------SLGRSLLVFFKLREKNLLCWN 280
H GAL GR I +YC + ++L +F L + ++ W+
Sbjct: 343 GHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWS 402
Query: 281 SITEALAIHGFAHEALGMFDRMTY-ENVRPN 310
++ LA++G + +AL +F +M ++RPN
Sbjct: 403 AVISGLAMNGESDKALHLFSQMEMISDIRPN 433
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 141 AMVDNYSYSNKFFE--SRRVSRRLF-DEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+++ N S+ F + S ++ +F D + K ++ D + LF ++ ++
Sbjct: 33 SLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNV 92
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
SW M +YS++ E + +N ++GT D + VL ACA L L GR I
Sbjct: 93 FSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSS 152
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
LG L VF + N++ A + G A +FD +
Sbjct: 153 TLKLGVHLDVFVQ---------NALISAFSSCGAVEAARAVFDML 188
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 32/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K GF VFV ++++D Y K E++ R LFD + E+ +WN M+ Y+
Sbjct: 338 IHGHVTKIGFEKDVFVSSSLIDMYC---KCGETKD-GRFLFDTILEKNMVSWNAMVGGYS 393
Query: 183 -----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
A+ LFN MP + SW+ +I + +QF E + FN+ G ++ T ++
Sbjct: 394 LNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSS 453
Query: 238 VLSACAHLGALDLGR---------GIQ-----------IYCRS--LGRSLLVFFKLREKN 275
+L ACA +LD G+ GIQ +Y +S + S VF ++ +KN
Sbjct: 454 LLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKN 513
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTY-ENVRPN 310
+ W ++ + LA G A E+L +F+ M ++ PN
Sbjct: 514 EVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPN 549
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 41/219 (18%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS--------------------- 159
+ +H ++K G SS ++ ++ Y K E+ ++S
Sbjct: 41 SALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGFDLVVHNCMISANVQR 100
Query: 160 ------RRLFDEMPERKFATWNTMIDA---YARLAELL--FNKMPAWDIRSWTTMITSYS 208
R+LFDEMP+ +W +I Y R+ E + F + P ++ SWT I+ Y
Sbjct: 101 GNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYV 160
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF 268
QN EA+ F K +S ++VT +V+ ACA+LG D G G+ + LG L+
Sbjct: 161 QNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLG--DFGLGMSV----LG---LIV 211
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
E +L NS+ G H A +FDRM ++V
Sbjct: 212 KTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDV 250
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
++R +FD M E+ +W ++D Y + EL +F++MP + SW+ MI Y Q+
Sbjct: 237 LAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGY 296
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG--------RS 264
E+L F + + G + +++LSA A + AL G I + +G S
Sbjct: 297 PEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSS 356
Query: 265 LL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
L+ +F + EKN++ WN++ +++G EA +F+ M N
Sbjct: 357 LIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRN 412
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 31/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG++ K G +V TA+ D Y+ S S++V
Sbjct: 470 LHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKV------------------------ 505
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSA 241
FN+MP + SWT MI +++ E+L F + +K S ++V VL A
Sbjct: 506 ------FNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFA 559
Query: 242 CAHLGALDLG 251
C+H G +D G
Sbjct: 560 CSHSGLVDKG 569
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GFS PV A++D Y+ N + E + ++F +MPER +W ++ YA +L
Sbjct: 178 GFSLPV--ANALLDMYT-KNGYLEE---AVKMFQQMPERNIISWTILVSGYAVAGQLDKA 231
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF + D+ WT MI + Q+ F EAL F + D+ T+ T+L+ CA++
Sbjct: 232 RMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANI 291
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GALD G I Y C + +SL +F +++ ++ W +I
Sbjct: 292 GALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAII 351
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
LA +G A +AL +F+ M +P+G
Sbjct: 352 CGLATNGQASKALELFEEMQRSKTKPDG 379
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH K GF + +++++ Y+ + +R++FDEMP+R WN M+ Y
Sbjct: 68 VHAAAVKTGFRWDAYTASSLLEMYTMLGRV----DFARKVFDEMPQRFLVLWNMMMRCYI 123
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R +F A+ + ++SG D+VT+ T ++AC
Sbjct: 124 RCG--------------------------RFTAAVALAEEMERSGATPDRVTLVTAVTAC 157
Query: 243 AHLGALDLGRGIQIYCRSL-GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
+ G L LGR I+ Y + G SL V N++ + +G+ EA+ MF +
Sbjct: 158 SRAGDLSLGRRIRAYMDGVFGFSLPVA-----------NALLDMYTKNGYLEEAVKMFQQ 206
Query: 302 MTYENV 307
M N+
Sbjct: 207 MPERNI 212
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G VFV T ++ Y + V+RR+FD MP + WNTM+ Y
Sbjct: 138 VHAFIVACGIEPDVFVSTELIRVYGERGEM----TVARRVFDSMPTKSTIAWNTMVHQYV 193
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS---DQVT 234
R ++ LF MP D+ SW T+I Y + +EAL F + + + + T
Sbjct: 194 RNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPT 253
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
M+TVLSACA G L+ G + +Y C S+ ++L VF K
Sbjct: 254 MSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAP 313
Query: 273 EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K +L W ++ LA+HG A++ L MF M + P+
Sbjct: 314 GKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPD 352
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 177 MIDAYARLAEL-----LFNKMPA-WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ + +F K P D+ SWTT+I + + + + L F+ + SG
Sbjct: 292 LIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCP 351
Query: 231 DQVTMATVLSACAHLGALDLG 251
D VT VL+ACAH G +D G
Sbjct: 352 DDVTFVGVLNACAHGGLVDEG 372
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ AY L A LF++MP + + T M +++ + Q +ALD F G
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 230 SDQVTMATVLSACAHLGA 247
D V +A VL+AC G+
Sbjct: 110 PDNVALAVVLAACHGAGS 127
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 38/254 (14%)
Query: 91 VFVYH----AFSSLRHP---LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMV 143
V +YH A SS+R + A+ L L H Q+ + GF FV + +V
Sbjct: 123 VRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLV 182
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIR 198
Y+ +++RV FDEM + +NTMI R A LF M D
Sbjct: 183 GMYAKMGLIGDAKRV----FDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCI 238
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY- 257
+WTTM+T ++QN +AL+ F + + G DQ T ++L+AC L AL+ G+ I Y
Sbjct: 239 TWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYI 298
Query: 258 ---------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
CRS+ + F ++ KN++ W ++ +G + EA+
Sbjct: 299 IRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAV 358
Query: 297 GMFDRMTYENVRPN 310
+F M + + P+
Sbjct: 359 RVFSEMQRDGIDPD 372
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/343 (19%), Positives = 143/343 (41%), Gaps = 56/343 (16%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
P+ ++ + + A+ L + ++ C I++ ++ F+ + ++ I
Sbjct: 138 PSRITMSAMVMAASALGDRALGRQFHC---QILRLGFGVNAFVGSPLVGM-YAKMGLIGD 193
Query: 79 TILVFPQMQEPNVFVYHAFSS--LRHPLQAIAFYLYML---RAEVLLTTVHGQVWKNGFS 133
VF +M NV +Y+ + LR + A L+ + R + TT+ +NG
Sbjct: 194 AKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLE 253
Query: 134 SPVF-------VQTAMVDNYSYSN---------KFFESRRVSRRLFDEMPERKFATWNTM 177
S Q +D Y++ + + +++ + + + +
Sbjct: 254 SQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSAL 313
Query: 178 IDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+D Y++ AE F +M +I SWT +I Y QN EA+ F++ ++ G D
Sbjct: 314 VDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373
Query: 233 VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL------------------------VF 268
T+ +V+S+CA+L +L+ G Q +C +L L+ +F
Sbjct: 374 FTLGSVISSCANLASLE--EGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLF 431
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ + + W ++ A G A E + +F++M ++V+P+G
Sbjct: 432 DEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDG 474
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++ Y + + LF++M D SWT ++T Y+Q + +E +D F K
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVK 471
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT VLSAC+ G ++ G
Sbjct: 472 PDGVTFIGVLSACSRAGFVEKG 493
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 159 SRRLFDEMPERKFATWNTMID--AYARL---AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+RR+FD P T+N ++ A+ARL + LF M D S+ +I +S
Sbjct: 60 ARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAH 119
Query: 214 REALDAFNKTKKSGTG--SDQVTMATVLSACAHLGALDLGRGIQIYCRSL---------- 261
A+ ++ ++G+ ++TM+ ++ A + LG LGR Q +C+ L
Sbjct: 120 ARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGR--QFHCQILRLGFGVNAFV 177
Query: 262 --------------GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
G + VF ++ KN++ +N++ L EA +F+ MT
Sbjct: 178 GSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMT 233
>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
Length = 698
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR----- 183
++G V T +V+ Y+ +R V LFD M +R +WN M+ A+A+
Sbjct: 219 QSGLDRDAVVGTTLVNLYARFGDVIAAREV---LFDSMKDRTVVSWNAMVTAFAQNARVD 275
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
AE LF +MP + SW MI + QN + ++AL+ F + G ++T +VL ACA
Sbjct: 276 EAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACA 335
Query: 244 HLGALDLGRGI---------------QIYCRSLGRSLL------VFFKLREKNLLCWNSI 282
+L A LGR I C G+ L F ++ ++++ W +I
Sbjct: 336 NLTASSLGRFICDGMDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAI 395
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPNG 311
A + +G++ EAL +F M V PNG
Sbjct: 396 IAAYSQNGYSSEALDIFRIMVQAGVEPNG 424
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 33/213 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ K G V +Q A+V Y+ + +++V FD + R +WN M+ A A
Sbjct: 82 IHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQV----FDRITHRDVVSWNAMVSANA 137
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
L ++ +M + D+ W+TMI++ + REAL+ + + S + T+AT
Sbjct: 138 EAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMILS-VRPNASTLAT 196
Query: 238 VLSACAHLGALDLGRGIQ--------------------IYCR---SLGRSLLVFFKLREK 274
VL+AC LG L G ++ +Y R + ++F ++++
Sbjct: 197 VLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDR 256
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++ WN++ A A + EA +F M ++V
Sbjct: 257 TVVSWNAMVTAFAQNARVDEAEKLFREMPDKSV 289
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 163 FDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
DE + + N++ + Y + LA F +M D+ SWT +I +YSQN EAL
Sbjct: 350 MDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEAL 409
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D F ++G + +T+ LSAC+H D G I
Sbjct: 410 DIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDI 446
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT--GSDQVTMATVLSAC 242
A +F+ MP + SW +I++Y + +EAL + +S T +D ++VL+AC
Sbjct: 11 ARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSSVLAAC 70
Query: 243 AHLGALDLG---------RGIQ-------------IYCRSLGRSLLVFFKLREKNLLCWN 280
A L L+ G RG++ C + R+ VF ++ ++++ WN
Sbjct: 71 ARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWN 130
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ A A G AL ++ M +V
Sbjct: 131 AMVSANAEAGHLEVALKIYQEMVSADV 157
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 34/184 (18%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKM--PAWDIRS----WTTMITSY 207
+R +FD MP R +W +I AY + A L+ + + +I++ +++++ +
Sbjct: 11 ARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSSVLAAC 70
Query: 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGR---- 263
++ K + L+ + K G D +++ A G +D R Q++ R R
Sbjct: 71 ARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRID--RAKQVFDRITHRDVVS 128
Query: 264 ----------------SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+L ++ ++ ++LCW+++ A A+ G EAL ++ M +V
Sbjct: 129 WNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMIL-SV 187
Query: 308 RPNG 311
RPN
Sbjct: 188 RPNA 191
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 61/321 (19%)
Query: 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLR 101
V+A ++ + + ++F S ID ++ VF + EP+ +++ A++
Sbjct: 92 VHAHMLLRGLQPTALVGSKMVAFYASSGD-IDSSVSVFNGIGEPSSLLFNSMIRAYARYG 150
Query: 102 HPLQAIAFYLYM---------------LRAEVLLTTV------HGQVWKNGFSSPVFVQT 140
+ +A Y M L++ V L +V HG + + G ++V T
Sbjct: 151 FAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVAT 210
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAW 195
+++ Y + ++ +V FD M R ++WN ++ Y + A +F +MP
Sbjct: 211 SLIILYGKCGEINDAGKV----FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR 266
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKK--SGTGSDQVTMATVLSACAHLGALDLGRG 253
+I SWTTMI+ YSQ+ ++AL F++ K SG + VT+ +VL ACA L L+ GR
Sbjct: 267 NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 326
Query: 254 I-QIYCR---------------------SLGRSLLVFFKL--REKNLLCWNSITEALAIH 289
I ++ CR SL + F KL EKNL+ WN++ A A +
Sbjct: 327 IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 386
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G +A+ F M ++P+
Sbjct: 387 GHGLQAVSTFREMIQAGIQPD 407
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+A +++DA +L N+ ++ +W TMIT+Y+ +A+ F + ++G
Sbjct: 350 YAKCGSLVDARNCFDKLNRNEK---NLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQP 406
Query: 231 DQVTMATVLSACAHLGALDLG 251
D +T +LS C+H G +D+G
Sbjct: 407 DDITFTGLLSGCSHSGLVDVG 427
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 120/273 (43%), Gaps = 45/273 (16%)
Query: 69 CTSRFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVH 124
C +R+H + I F +M +PN F + LQ + +H
Sbjct: 85 CFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSG----------RQLH 134
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
K G S VFV +A+VD Y+ E+++ F++ E ++ T+I Y +
Sbjct: 135 ACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKA----FEDTHEPNVVSYTTLIRGYLKK 190
Query: 185 -----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
A LF KMP ++ SW MI+ YSQ EA++ F + GT ++ T +
Sbjct: 191 ERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAI 250
Query: 240 SACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLL 277
SA A++ AL +GR + Y C S+ SLLVF L +KN++
Sbjct: 251 SAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIV 310
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A HG EA+ F++M +RPN
Sbjct: 311 SWNALICGYANHGRGMEAIYFFEKMQDTGLRPN 343
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+++ YA+ L+FN +P +I SW +I Y+ + + EA+ F K + +G
Sbjct: 282 NSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLR 341
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT+ +L AC H G +D G
Sbjct: 342 PNSVTLLGLLLACNHSGLVDKG 363
>gi|356495350|ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Glycine max]
Length = 579
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 61/320 (19%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID--YTILVFPQMQEPNVF-- 92
C + + L + A +V ++ + +LA+ +S + H D YT ++F + + F
Sbjct: 51 CQNARHLLQIQALLVTSSLFRNPYLARTILSRAS---HLCDVAYTRVIFRSINSLDTFCV 107
Query: 93 --VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWK 129
V A+S+ P +AI FY L + H Q K
Sbjct: 108 NIVIQAYSNSHAPREAIVFYFRSLMRGFFPNSYTFVPLVASCAKMGCIGSGKECHAQATK 167
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
NG S + VQ +++ Y +++R LFD M R +WN++I+ + + EL
Sbjct: 168 NGVDSVLPVQNSLIHMYVCCGGV----QLARVLFDGMLSRDLVSWNSIINGHMMVGELNA 223
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
LF+KMP ++ +W MI+ Y + + A+ F + + G + TM V +AC
Sbjct: 224 AHRLFDKMPERNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGNARTMVCVATACGR 283
Query: 245 LGALDLGR----------------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
G L + G+ CR + + +VF ++RE+NL+ WN +
Sbjct: 284 SGRLKEAKSVHGSIVRMSLRSSLILDTALIGMYCKCRKVEVAQIVFERMRERNLVSWNMM 343
Query: 283 TEALAIHGFAHEALGMFDRM 302
I G + L +F+ M
Sbjct: 344 ILGHCIRGSPEDGLDLFEVM 363
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG ++G +FV +A+V Y+ S R +R +FD MP R +WN ++ AY
Sbjct: 287 IHGFAVRHGMVVNLFVCSALVSLYAKC----LSVREARMVFDLMPHRDVVSWNGVLTAYF 342
Query: 183 RLAEL-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ E LF KM +R +W +I +N + EA++ F K +K G +++
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 402
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T++++L AC+ L +G+ I Y C L S VF +
Sbjct: 403 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 462
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R K+++ WN++ A A+HG EAL +FD+M V+PN
Sbjct: 463 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPN 501
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G S VFV A++ Y K E +RR+FD++ R
Sbjct: 186 VHDDATRCGVMSDVFVGNALIHAYGKC-KCVEG---ARRVFDDLVVR------------- 228
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SWT++ + Y + R+ +D F + SG + +T++++L AC
Sbjct: 229 -------------DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 275
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A L L G+ I + C S+ + +VF + ++++ WN
Sbjct: 276 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 335
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ A + + +F +M+ + VR +
Sbjct: 336 GVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 365
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ K GF ++++ S+S + + +F + ++ YA+
Sbjct: 391 KMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCG 450
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+L +F+ M D+ +W TMI + + + +EAL F+K S + VT VLS
Sbjct: 451 DLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLS 510
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLLV 267
C+H ++ G+QI+ S+GR LV
Sbjct: 511 GCSHSRLVE--EGVQIF-NSMGRDHLV 534
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA- 243
A LF+ +P D + +T+I++ + + EA+ ++ ++ G D ACA
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 176
Query: 244 ----------HLGALDLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSI 282
H A G ++ C+ + + VF L ++++ W S+
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+ GF + + +F M + V+PN
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGWSGVKPN 264
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V+K + + V A++D Y + ++R+ +FDEMPE+
Sbjct: 229 IHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARK----MFDEMPEK------------- 271
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
DI SWT+MI Q + RE+LD F++ + SG D V + +VLSAC
Sbjct: 272 -------------DIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSAC 318
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LG LD GR + Y C + + +F + KN+ WN
Sbjct: 319 ASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWN 378
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LAI+G+ EAL F+ + RPN
Sbjct: 379 AYIGGLAINGYGKEALKQFEDLVESGTRPN 408
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++D YA+ +A+ +FN MP+ +IR+W I + N +EAL F +SGT
Sbjct: 348 TLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRP 407
Query: 231 DQVTMATVLSACAHLGALDLGR 252
++VT V +AC H G +D GR
Sbjct: 408 NEVTFLAVFTACCHNGLVDEGR 429
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 128/320 (40%), Gaps = 59/320 (18%)
Query: 29 IIANQLKKCSSIKELECVYATIVKT---NANLDCFLAKQFISFCTSRFHF-------IDY 78
++ + + KC+ ++ + ++A ++ + +L A F+ + H+ D+
Sbjct: 11 VLLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDW 70
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
++ FP N+ + ++S + P AI Y + +R NGF V+
Sbjct: 71 SLSSFP----CNLLI-SGYASGQLPWLAILIYRWTVR--------------NGFVPDVYT 111
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE-----LLFNKMP 193
A++ + + + E R+ NT++ Y+ + +F M
Sbjct: 112 FPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDML 171
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ SWT +I+ Y + F EA+ F + + T ++L AC LG L+LG+G
Sbjct: 172 VRDVVSWTGLISGYVKTGLFNEAISLFLRMNVE---PNVGTFVSILGACGKLGRLNLGKG 228
Query: 254 IQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
I + C S+ + +F ++ EK+++ W S+ L
Sbjct: 229 IHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQS 288
Query: 292 AHEALGMFDRMTYENVRPNG 311
E+L +F +M P+G
Sbjct: 289 PRESLDLFSQMQASGFEPDG 308
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 116/268 (43%), Gaps = 39/268 (14%)
Query: 76 IDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT------VHGQVWK 129
I Y +F ++ P+VFVY+ +R Y ++L+A L VH Q+ K
Sbjct: 62 IYYAFSIFERIPSPDVFVYNTM--IRGLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIK 119
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY---ARL-- 184
G + ++++ Y+ S ++ RV E E N MI Y R+
Sbjct: 120 AGIVPDTHIHSSLIHMYTNSGSIDDAERV----LGEFSEENTLAKNAMISGYLTEGRVDK 175
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F+ M A D SW+ +IT Y++N EAL F S ++ + ++LSAC
Sbjct: 176 ARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQ 235
Query: 245 LGALDLGRGIQIY---CRSLGRSLL-------------------VFFKLREKNLLCWNSI 282
LG L GR I Y R L + L +F K+ ++++ W +
Sbjct: 236 LGTLHQGRWIHAYIDKTRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVM 295
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
A AIHG A + +FD M + +RPN
Sbjct: 296 ISAFAIHGHASKCFQLFDEMLADGIRPN 323
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ + LF KM D+ +W MI++++ + + F++ G +
Sbjct: 264 LIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPN 323
Query: 232 QVTMATVLSACAHLGALDLGR 252
+V +LSAC+H G ++ GR
Sbjct: 324 KVIFVAILSACSHAGCVEEGR 344
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 58/231 (25%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV--------------------SRRLFDE-------MPE 168
VF TA+V Y+ + E+RRV RR+ DE MP
Sbjct: 130 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 189
Query: 169 RKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R A+WNTM+ YA+ A+ +F+ MP D SW M+ +YSQ E L F +
Sbjct: 190 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 249
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL----------GRSLL------- 266
+ G ++ A VLS CA + AL+ G+Q++ R + G +LL
Sbjct: 250 GRCGEWVNRSAFACVLSTCADIAALEC--GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 307
Query: 267 -------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ E++++ WN++ A HGF EAL +FD M + +P+
Sbjct: 308 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 358
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 26/177 (14%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V A++ Y K E+R LFD MP R +WN M+ YAR ++ LF+
Sbjct: 68 VISWNALMSGYVQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 123
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
P D+ +WT +++ Y+QN EA F+ + S +A +
Sbjct: 124 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR--------- 174
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
R + + +F + +N+ WN++ A G EA +FD M ++
Sbjct: 175 --------RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 223
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
++R FD PE+ +WN M+ AY R A LFN WD+ SW +++ Y Q +
Sbjct: 24 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGK 83
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
EA + F++ G D V+ ++S A RG + R L F
Sbjct: 84 MSEARELFDRM----PGRDVVSWNIMVSGYAR-------RGDMVEARRL------FDAAP 126
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+++ W ++ A +G EA +FD M N
Sbjct: 127 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 161
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG++ + G+ FV A++ Y ++R F+EM ER
Sbjct: 280 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA----FEEMEER------------- 322
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW TMI Y+++ +EAL+ F+ + + T D +T+ VL+AC
Sbjct: 323 -------------DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 370 SHSGLVEKG 378
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 166 MPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
MP R T+N MI ++A LA F+ P D SW M+ +Y +N + EA F
Sbjct: 1 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWN 280
N S T D ++ ++S G + R +++ R GR +++ WN
Sbjct: 61 N----SRTEWDVISWNALMSGYVQWGKMSEAR--ELFDRMPGR-----------DVVSWN 103
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
+ A G EA +FD +V
Sbjct: 104 IMVSGYARRGDMVEARRLFDAAPVRDV 130
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 133/324 (41%), Gaps = 77/324 (23%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC--TSRF 73
N P S ++I ++ N +S EL V+A I+KTNA L + C T F
Sbjct: 54 NVKPQSSETLKIDLLRN----FNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSF 109
Query: 74 HFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWK 129
H+ I + Q+P FV++ A + P+ AI + Y LR
Sbjct: 110 HYAQ-QIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLF-YRLR-------------- 153
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLF 189
Y F V R A N + + R+ +
Sbjct: 154 ---------------QYDVCPDTFTCSSVLR-----------ACLNLLDLSNGRILHGVV 187
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
K+ RSWT+MI Y Q + +EA+ F K +++G ++VT+ VL+ACA LGALD
Sbjct: 188 EKV---GFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALD 244
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG I Y C L + VF ++ E+ ++ W+++ LA
Sbjct: 245 LGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 304
Query: 288 IHGFAHEALGMFDRMTYENVRPNG 311
+HG A EAL +F M+ + PNG
Sbjct: 305 MHGRAEEALRLFSDMSQVGIEPNG 328
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAYARLAEL-----LFN 190
FV+TA++D ++ F + ++R +FDE+ +R TWN MI AY R+ +L LF+
Sbjct: 294 FVKTALLDMHAK----FGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSACAHLGALD 249
MP D+ SW +MI Y+QN + +++ F + D+VT+A+VLSAC H+GAL
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409
Query: 250 LG-------------RGIQIY---------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
L GI + C S+ + +F + ++++ +N++ A
Sbjct: 410 LSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFA 469
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G EA+ + M E + P+
Sbjct: 470 ANGHGKEAIKLVLTMEEEGIEPD 492
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 162 LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREA 216
LF+ MP R TW +M+ YA++ +L F++MP + SW M ++Y+Q + +EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
L+ F++ + G D T +S+C+ +G L I
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSI 280
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 117/300 (39%), Gaps = 77/300 (25%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
K S+I++L + +V + + + + CT Y +F P+ VY
Sbjct: 10 KISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYS 69
Query: 96 A----FSSLRHPLQAIAF---------------YLYMLR-AEVLLTTVHGQVWKNGFSSP 135
+S + Q ++ Y+Y+++ A H V K G
Sbjct: 70 CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLGHIDD 129
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN 190
F++ A++D Y+ + + ++R LF++M ER A WN+MI + A +LFN
Sbjct: 130 HFIRNAILDMYAKNGQV----DLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFN 185
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
MPA +I +WT+M+T Y A +G L+
Sbjct: 186 MMPARNIITWTSMVTGY-----------------------------------AKMGDLES 210
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R F ++ E++++ WN++ A A EAL +F +M E + P+
Sbjct: 211 AR-------------RYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPD 257
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+ +N++I Y++ A +F M D+ S+ T+I+ ++ N +EA+ ++
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEE 486
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGI 254
G D VT VL+AC+H G L+ G+ +
Sbjct: 487 EGIEPDHVTYIGVLTACSHAGLLNEGKNV 515
>gi|144923518|gb|ABP02616.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 501
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPE 168
VF TAMV Y S E+RRV +R LF+ MP
Sbjct: 213 VFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPC 272
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R +WNT+I Y + ++ LF+ M D SW +I Y+Q + + + K
Sbjct: 273 RNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKM 332
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGI--------------------QIYCR--SL 261
K+ G ++ T LS CA + AL LG+ + ++YC+ S+
Sbjct: 333 KRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSI 392
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
G + VF +++ K+++ WN++ A HGF +AL +FD M +P+
Sbjct: 393 GEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPD 441
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD MP R +WNTMI YAR +L LF + P D+ +WT M+ +Y Q+
Sbjct: 170 ARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGML 229
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIYCRSLGRSLLVFFKL 271
EA F++ G ++ +++ +D+ R + + CR++G
Sbjct: 230 DEARRVFDEM----PGKREMAYNVMIAGYVQYKKMDMARELFEAMPCRNVG--------- 276
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
WN+I +G +A +FD MT +
Sbjct: 277 ------SWNTIISGYGQNGDIAQARELFDMMTQRD 305
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 152 FFESRRV--SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ ++RR+ +R LFD MP++ +WN M+ Y R A+L+F+ MP D SW ++
Sbjct: 68 YVKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLL 127
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
Y QN + EA F +V + C G + + LG +
Sbjct: 128 AVYVQNGRLEEARRLF---------ESKVDWELISWNCLM--------GGYVKRKMLGDA 170
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+F + +N + WN++ A G +A +F+ +V
Sbjct: 171 RRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDV 213
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+ A VL VHGQ K G+ + V A+++ Y E+ V
Sbjct: 354 MAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIGEAYDV--------------- 398
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
F +M DI SW TM+ Y+++ R+AL F+ K +G D++
Sbjct: 399 ---------------FERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEI 443
Query: 234 TM 235
TM
Sbjct: 444 TM 445
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
M + + LA +F+ MP ++ SW M+T Y +N++ +A + F+ + D V+
Sbjct: 38 MRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQ----KDAVSWN 93
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+LS G +D + LVF + K+ + WN + +G EA
Sbjct: 94 VMLSGYVRSGCVDEAK-------------LVFDNMPYKDSISWNGLLAVYVQNGRLEEAR 140
Query: 297 GMFD 300
+F+
Sbjct: 141 RLFE 144
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 32/217 (14%)
Query: 122 TVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++HG K G + V V TA++ YS +F R +R +FD + ++ TWNTMID
Sbjct: 83 SLHGYACKLGLDRNQVMVGTAILGMYSKRRRF----RKARLVFDRVEDKNSVTWNTMIDG 138
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y R + +F++MP D+ SWT MI + + EAL F + + SG D V +
Sbjct: 139 YMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAV 198
Query: 236 ATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLVFFKLRE 273
L+ACA+LGAL G I +YCR + + VF ++ +
Sbjct: 199 IAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEK 258
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++ WNS+ A +G AHE+L F RM E +P+
Sbjct: 259 RTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPD 295
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA---------HLGALD 249
SWT+ IT S+N + EA F + +G + +T+ +LS CA H A
Sbjct: 31 SWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCEPFGDSLHGYACK 90
Query: 250 LG------------RGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
LG G+ R ++ LVF ++ +KN + WN++ + G +A
Sbjct: 91 LGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAAK 150
Query: 298 MFDRM 302
+FD M
Sbjct: 151 VFDEM 155
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F++M + SW ++I ++ N E+L F + ++
Sbjct: 234 NSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFK 293
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 294 PDAVTFTGALTACSHVGLVEEG 315
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 28/183 (15%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNK 211
+++LFD MP R +WN MID YA++ A LFN+MP +I SW M+ Y + K
Sbjct: 270 EAAKKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCK 329
Query: 212 QFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LG 262
+ E L F++ ++ ++ ++ +VL+ACA+ LDLG+ I Y + L
Sbjct: 330 NYGECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLS 389
Query: 263 RSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
+LL +F K+ K+++ WNS+ AI+G A +AL F M ++
Sbjct: 390 TALLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMM 449
Query: 309 PNG 311
PN
Sbjct: 450 PNA 452
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F KMP + SW +MI Y+ N +AL+ F + +KS + T +VLSAC+H
Sbjct: 405 ARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPNAATFVSVLSACSH 464
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 47/310 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L+KCSS++EL+ ++A I+ + ISFC+ S+ + Y LVF + +PN F
Sbjct: 51 LEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKF 110
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
+++ +S+ HP+ AI Y+ M+R+ L N F+ P FV + +Y
Sbjct: 111 MFNCLIRGYSTSPHPINAIFLYVQMMRSGFL---------PNRFTLP-FVLKSCASQLAY 160
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTM 203
F + R M + N +I+AYA + A +F++M + SW +M
Sbjct: 161 WEAFVVHCQAIRL---GMLSHVYVH-NALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSM 216
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG- 262
I Y +N + A F + +++G D+ T+ +LS C+ LD+G+ + Y G
Sbjct: 217 IGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGI 276
Query: 263 -------RSLL---------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+LL +F ++ EKN++ WNS+ G EAL +F
Sbjct: 277 EFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQ 336
Query: 301 RMTYENVRPN 310
+M + P+
Sbjct: 337 QMCETTIIPD 346
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 28/164 (17%)
Query: 175 NTMID-AYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
N ++D AY+ R A +F+++P ++ SW +MI Y Q+ Q +EAL F + ++
Sbjct: 284 NALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTI 343
Query: 229 GSDQVTMATVLSACAHLGALDLGR----------------------GIQIYCRSLGRSLL 266
D+ T+ +VLSAC+ +G L +G + + C +L L
Sbjct: 344 IPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGALETVLD 403
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
FF+ ++KNL+ WN + +ALA+HG +AL +F+ M + P+
Sbjct: 404 FFFEFKDKNLVSWNIVIQALALHGHGLDALKLFNMMHTTGIWPD 447
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 58/231 (25%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV--------------------SRRLFDE-------MPE 168
VF TA+V Y+ + E+RRV RR+ DE MP
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 314
Query: 169 RKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R A+WNTM+ YA+ A+ +F+ MP D SW M+ +YSQ E L F +
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL----------GRSLL------- 266
+ G ++ A VLS CA + AL+ G+Q++ R + G +LL
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALEC--GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432
Query: 267 -------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ E++++ WN++ A HGF EAL +FD M + +P+
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 26/177 (14%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V A++ Y K E+R LFD MP R +WN M+ YAR ++ LF+
Sbjct: 193 VISWNALMSGYVQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 248
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
P D+ +WT +++ Y+QN EA F+ + S +A
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY------------ 296
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
I R + + +F + +N+ WN++ A G EA +FD M ++
Sbjct: 297 -----IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 38/207 (18%)
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVS------RRLFDEMPERKFATWNTMIDAYAR-- 183
++ +F DNYSY N + VS R LFDEMP R T+N MI ++A
Sbjct: 87 LAASLFRAIPRPDNYSY-NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG 145
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
LA F+ P D SW M+ +Y +N + EA FN S T D ++ ++S
Sbjct: 146 LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMS 201
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLL--------------------VFFKLREKNLLCWN 280
G + R +++ R GR ++ +F +++ W
Sbjct: 202 GYVQWGKMSEAR--ELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT 259
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ A +G EA +FD M N
Sbjct: 260 AVVSGYAQNGMLEEARRVFDAMPERNA 286
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG++ + G+ FV A++ Y ++R F+EM ER
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA----FEEMEER------------- 447
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW TMI Y+++ +EAL+ F+ + + T D +T+ VL+AC
Sbjct: 448 -------------DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 495 SHSGLVEKG 503
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+ RLF MP R +T+N M+ Y+ LA LF +P D S+ T++ + + +
Sbjct: 57 AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSL 116
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272
+A F++ D VT ++S+ A+ G + L R +F L
Sbjct: 117 ADARGLFDEMPV----RDSVTYNVMISSHANHGLVSLARH--------------YFDLAP 158
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
EK+ + WN + A +G EA G+F+ T +V
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV 193
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 63/335 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF----IDYTILVFPQ 85
+A L C++++ ++A V+ + D + + F R + +D T+ +
Sbjct: 38 VAGLLTGCATLRRTGELHAAAVRAGVDGD-----RAVGFRLQRAYAASDRLDLTVTLLRL 92
Query: 86 MQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT------------------V 123
+P Y HA SS L A+A ML ++ T+ +
Sbjct: 93 TPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRAL 152
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H +K + +V TA++ Y+ +R LFDEMP+ M+ YA+
Sbjct: 153 HAYAFKLALAGDSYVATALLGMYARGG----DADAARALFDEMPDPHVVPVTAMLTCYAK 208
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ L LF+ MP+ D W MI Y+Q+ + EAL F +SG D+V +
Sbjct: 209 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILA 268
Query: 239 LSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKN 275
LSA A LG + GR + Y C SL ++ VF + +K+
Sbjct: 269 LSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKD 328
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WN++ A+HG + +AL MF ++ + + P
Sbjct: 329 IVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 363
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ID Y + L +FN + DI W MI Y+ + R+AL+ F++ + G
Sbjct: 302 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 361
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+T +L+AC+H G +D G
Sbjct: 362 PTDITFIGLLNACSHSGLVDEG 383
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 63/335 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF----IDYTILVFPQ 85
+A L C++++ ++A V+ + D + + F R + +D T+ +
Sbjct: 37 VAGLLTGCATLRRTGELHAAAVRAGVDGD-----RAVGFRLQRAYAASDRLDLTVTLLRL 91
Query: 86 MQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT------------------V 123
+P Y HA SS L A+A ML ++ T+ +
Sbjct: 92 TPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRAL 151
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H +K + +V TA++ Y+ +R LFDEMP+ M+ YA+
Sbjct: 152 HAYAFKLALAGDSYVATALLGMYARGG----DADAARALFDEMPDPHVVPVTAMLTCYAK 207
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ L LF+ MP+ D W MI Y+Q+ + EAL F +SG D+V +
Sbjct: 208 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILA 267
Query: 239 LSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLREKN 275
LSA A LG + GR + Y C SL ++ VF + +K+
Sbjct: 268 LSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKD 327
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WN++ A+HG + +AL MF ++ + + P
Sbjct: 328 IVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 362
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ID Y + L +FN + DI W MI Y+ + R+AL+ F++ + G
Sbjct: 301 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 360
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+T +L+AC+H G +D G
Sbjct: 361 PTDITFIGLLNACSHSGLVDEG 382
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 115/283 (40%), Gaps = 79/283 (27%)
Query: 78 YTILVFPQMQEPNVFVYHA-------------------FSSLRHPLQA---------IAF 109
Y +F Q+ EP F Y++ F R L A +AF
Sbjct: 76 YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135
Query: 110 YLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
L A +H Q + +G +VQT +++ Y+ E ++R +FD M E
Sbjct: 136 VLKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARC----EEVALARNVFDGMVED 191
Query: 170 KFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
K ++ +W++MI YS+ EAL F + G
Sbjct: 192 K-------------------------NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVN 226
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D+VTM +V+SACA GALDLG+ + + C + R+ V
Sbjct: 227 PDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSV 286
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + E++ W+++ LA+HG A +ALG+F RM VRPN
Sbjct: 287 FDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPN 329
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ A+ +F+ M D ++W+ MI + + +AL F++ +
Sbjct: 269 ALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRP 328
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT VLSACAH G +D GR
Sbjct: 329 NNVTFVGVLSACAHSGLVDDGR 350
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAYARLAEL-----LFN 190
FV+TA++D ++ F + ++R +FDE+ +R TWN MI AY R+ +L LF+
Sbjct: 294 FVKTALLDMHAK----FGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSACAHLGALD 249
MP D+ SW +MI Y+QN + +++ F + D+VT+A+VLSAC H+GAL
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409
Query: 250 LG-------------RGIQIY---------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
L GI + C S+ + +F + ++++ +N++ A
Sbjct: 410 LSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFA 469
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G EA+ + M E + P+
Sbjct: 470 ANGHGKEAIKLVLTMEEEGIEPD 492
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 60/275 (21%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
K S+I++L + +V + + + + CT Y +F P+ VY
Sbjct: 10 KISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYS 69
Query: 96 A----FSSLRHPLQAIAF---------------YLYMLR-AEVLLTTVHGQVWKNGFSSP 135
+S + Q ++ Y+Y+++ A H V K G
Sbjct: 70 CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLGHIDD 129
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN 190
F++ A++D Y+ + + ++R LF++M ER A WN+MI + A +LFN
Sbjct: 130 HFIRNAILDMYAKNGQV----DLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFN 185
Query: 191 KMPAWDIRSWTTMIT-------------------------------SYSQNKQFREALDA 219
MPA +I +WT+M+T +Y+Q + +EAL+
Sbjct: 186 MMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
F++ + G D T +S+C+ +G L I
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSI 280
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+ +N++I Y++ A +F M D+ S+ T+I+ ++ N +EA+ ++
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEE 486
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGI 254
G D VT VL+AC+H G L+ G+ +
Sbjct: 487 EGIEPDHVTYIGVLTACSHAGLLNEGKNV 515
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 31/178 (17%)
Query: 162 LFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
LF MPE +WN MI ++ +LA LF ++P + SW +MI+ Y +N+ ++ A
Sbjct: 342 LFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGA 401
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------- 257
++ F + + G D+ T++++LSACA G +DL G QI+
Sbjct: 402 MNIFLQMQLEGKKPDRHTLSSILSACA--GLVDLVLGTQIHQLVTKAFIADLPINNSLVT 459
Query: 258 ----CRSLGRSLLVFFKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ + +VF ++ +++++ WN++ A HGFA EAL +FD M NV+P+
Sbjct: 460 MYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPS 517
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 142 MVDNY-SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAW 195
M+ Y S KF E +R +FD+MPE +WNTM+ YA+ AE LFN+MP
Sbjct: 125 MLSGYISCGGKFVER---ARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPER 181
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL-DLGRGI 254
++ SW M++ Y N +A++ F K D ++ ++S L + R +
Sbjct: 182 NVVSWNAMVSGYLMNGHVEKAIEFFKLMPK----RDSASLRALVSGLIQNDKLVEAERIL 237
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
Y ++G+ LV +N++ G A+EA +FDR+
Sbjct: 238 LQYGGNVGKGDLVD---------AYNTLIAGYGQKGMAYEARKLFDRI 276
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
+SLR + + ++ AE +L G V K V ++ Y +E+R+
Sbjct: 215 ASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDL---VDAYNTLIAGYGQKGMAYEARK 271
Query: 158 VSRRLFDEMP--------ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
LFD +P R +WN+MI Y R ++ LF+KM D SW TMI
Sbjct: 272 ----LFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
+ Y Q +EA + F++ + D ++ ++S + +G+L L +
Sbjct: 328 SGYVQILDMKEASNLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDL---------- 373
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ EK+L+ WNS+ + A+ +F +M E +P+
Sbjct: 374 ---FKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 24/151 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY-SQNKQ 212
+R LFD TWN MI AY + E+ LF +MP DI SW M++ Y S +
Sbjct: 76 ARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGK 135
Query: 213 FRE-ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271
F E A + F++ + +D V+ T+LS A G +D ++ +F ++
Sbjct: 136 FVERARNMFDQMPE----TDCVSWNTMLSGYAKSGTMD-------------KAEELFNEM 178
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRM 302
E+N++ WN++ ++G +A+ F M
Sbjct: 179 PERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160
RH L +I L VL T +H Q+ F + + + ++V YS E+R V
Sbjct: 417 RHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSRCGAIVEARMV-- 473
Query: 161 RLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
FDEM ++ D+ SW MI Y+ + EAL F
Sbjct: 474 --FDEMNLQR-------------------------DVISWNAMIGGYAYHGFATEALQLF 506
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ K+ +T +VL+ACAH G ++ GR
Sbjct: 507 DLMKQCNVQPSYITFISVLNACAHAGLIEEGR 538
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++++D Y + A+ +F++MP+ ++ +WT +I Y Q + F + + F + KS
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVA 303
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
++ T+++VLSACAH+GAL GR + Y C L ++LV
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILV 363
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +LREKN+ W ++ A HG+A A+ +F M +V PN
Sbjct: 364 FERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPN 406
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K GF S +FV+ +++ YS F R+FD ++ +W MID + R
Sbjct: 126 HAHILKFGFDSDLFVRNSLISGYSNCGLF----EFGSRVFDGTEDKDVVSWTAMIDGFVR 181
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N EA+ F + K+SG ++++T+ +VL A
Sbjct: 182 --------------------------NDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATR 215
Query: 244 HLGALDLGRGIQIYCRSLGR---------SLL--------------VFFKLREKNLLCWN 280
+ GR I + GR SL+ VF ++ +N++ W
Sbjct: 216 KAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWT 275
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + +F+ M +V PN
Sbjct: 276 ALIAGYVQGRCFEKGMFVFEEMLKSDVAPN 305
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
RRV + E T+ID YA+ A L+F ++ ++ +WT MI ++
Sbjct: 325 GRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAA 384
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
+ A+D F+ S ++VT VLSACAH G ++ GR + + S+ F
Sbjct: 385 HGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFL-------SMKERF 437
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
L E + + + G EA + +RM E
Sbjct: 438 NL-EPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 31/216 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY- 181
VH Q+ K G S + ++++ Y+ S E+ V R E E N+MI Y
Sbjct: 109 VHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVLR----EFSEENTLAKNSMISGYL 164
Query: 182 ----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
A +F++M A D+ SW+ +IT ++N EAL F S T ++ + +
Sbjct: 165 SKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVS 224
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLV----------------------FFKLREKN 275
+LSACAHLGAL GR I Y +G + + F K+ ++
Sbjct: 225 LLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRD 284
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ W +I AI+G A + +F+ M + + PNG
Sbjct: 285 IVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNG 320
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ ++ F KMP DI +W +I+ ++ Q ++ + F + G
Sbjct: 259 ALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYP 318
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ V +LSAC+H G ++ G+
Sbjct: 319 NGVIFVAILSACSHAGYVEEGK 340
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 58/231 (25%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV--------------------SRRLFDE-------MPE 168
VF TA+V Y+ + E+RRV RR+ DE MP
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 314
Query: 169 RKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R A+WNTM+ YA+ A+ +F+ MP D SW M+ +YSQ E L F +
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL----------GRSLLVFF---- 269
+ G ++ A VLS CA + AL+ G+Q++ R + G +LL +
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALEC--GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432
Query: 270 ----------KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ E++++ WN++ A HGF EAL +FD M + +P+
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 26/177 (14%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V A++ Y K E+R LFD MP R +WN M+ YAR ++ LF+
Sbjct: 193 VISWNALMSGYVQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 248
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
P D+ +WT +++ Y+QN EA F+ + S +A
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY------------ 296
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
I R + + +F + +N+ WN++ A G EA +FD M ++
Sbjct: 297 -----IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 38/207 (18%)
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVS------RRLFDEMPERKFATWNTMIDAYAR-- 183
++ +F DNYSY N + VS R LFDEMP R T+N MI ++A
Sbjct: 87 LAASLFRAIPRPDNYSY-NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG 145
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
LA F+ P D SW M+ +Y +N + EA FN S T D ++ ++S
Sbjct: 146 LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMS 201
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLL--------------------VFFKLREKNLLCWN 280
G + R +++ R GR ++ +F +++ W
Sbjct: 202 GYVQWGKMSEAR--ELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT 259
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ A +G EA +FD M N
Sbjct: 260 AVVSGYAQNGMLEEARRVFDAMPERNA 286
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG++ + G+ FV A++ Y ++R F+EM ER
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA----FEEMEER------------- 447
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW TMI Y+++ +EAL+ F+ + + T D +T+ VL+AC
Sbjct: 448 -------------DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 495 SHSGLVEKG 503
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+ RLF MP R +T+N M+ Y+ LA LF +P D S+ T++ + + +
Sbjct: 57 AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSL 116
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272
+A F++ D VT ++S+ A+ G + L R +F L
Sbjct: 117 ADARGLFDEMPV----RDSVTYNVMISSHANHGLVSLARH--------------YFDLAP 158
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
EK+ + WN + A +G EA G+F+ T +V
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV 193
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
++ LF MP R TW TMID YA+L A+ LF++MP D+ ++ +M+ Y QN+
Sbjct: 272 AKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHH 331
Query: 214 REALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EAL+ F + K+S D+ T+ VLSA A LG L + +Y
Sbjct: 332 MEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVA 391
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ +++ VF + K++ WN++ LAIHG A + + ++ P+
Sbjct: 392 LIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPD 451
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N+MID Y
Sbjct: 144 IHGFLRKTGIWSDLFLQNCLIGLYLKCGCL----GFARQIFDRMPQRDSVSYNSMIDGYI 199
Query: 183 RL-----AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q + ++ +K D ++
Sbjct: 200 KCGLIESARELFDLMPREMKNLISWNSMISGYAQTS---DGVNIASKLFAEMPEKDLISW 256
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ G ++ + + F + ++++ W ++ + A GF H+A
Sbjct: 257 NSLIYGYVKHGRMEDAKDL-------------FHVMPRRDVVTWATMIDGYAKLGFVHKA 303
Query: 296 LGMFDRMTYENV 307
+FD+M + +V
Sbjct: 304 KTLFDQMPHRDV 315
>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 39/233 (16%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L A + VHG V K GF + + A++ Y K + + +LF ++ + +
Sbjct: 307 LGALSIADKVHGFVIKGGFEECLPSRNALIHVYGKQGKV----KDAEQLFRQIRNKGIES 362
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWD--------IRSWTTMITSYSQNKQFREALDAF 220
WN++I ++ +L LF ++ D + +WT++I + + +L+ F
Sbjct: 363 WNSLITSFVDAGKLDEALSLFTELEEMDDVCNVKANVVTWTSVIKGCNVQGRGDYSLEYF 422
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------C 258
+ + S S+ VT+ +LS CA L AL+LGR I + C
Sbjct: 423 RRMQFSKVLSNSVTICCILSICAELPALNLGREIHGHVIRTSMSDNILVQNALVNMYTKC 482
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L LVF +R+K+L+ WNSI + +HGF +AL MFDRM P+G
Sbjct: 483 GLLREGSLVFEAIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDG 535
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L H QV + G + V ++ Y + + ++ LF EMP R +WN MI
Sbjct: 176 LCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYN----LFVEMPVRNRMSWNVMI 231
Query: 179 DAYAR-----LAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+++ A +F M D + +WT++++ +SQ +F + + F+ + S +
Sbjct: 232 KGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCGKFEDVIKYFHVMRMSASA 291
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLG-------RSLLV--------------- 267
+A S CA LGAL + + + G R+ L+
Sbjct: 292 VSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEECLPSRNALIHVYGKQGKVKDAEQL 351
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
F ++R K + WNS+ + G EAL +F +
Sbjct: 352 FRQIRNKGIESWNSLITSFVDAGKLDEALSLFTEL 386
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + S + VQ A+V+ Y+
Sbjct: 456 IHGHVIRTSMSDNILVQNALVNMYTKCGLL------------------------------ 485
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R L+F + D+ SW ++I Y + +AL F++ KSG D + + VLSAC
Sbjct: 486 REGSLVFEAIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSAC 545
Query: 243 AHLGALDLGRGI 254
+H G ++ GR I
Sbjct: 546 SHAGLVEKGRKI 557
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 40/168 (23%)
Query: 178 IDAYARLAELLFNK-------MPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ Y+RL LL + + W D+R W +++ + + + A + + ++ G
Sbjct: 96 VSVYSRLGLLLDARNVFETVSLVLWSDLRLWNSILKANVSHGLYENAFELYRGMRERGLT 155
Query: 230 SDQVTMATVLSACAHLGALDLGRG-----IQIYCRS-----------------LGRSLLV 267
D + +L AC +LG L R IQI + +G + +
Sbjct: 156 GDGFILPLILRACRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYNL 215
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHE-----ALGMFDRMTYENVRPN 310
F ++ +N + WN + I GF+ E A+ +F+ M E+ +P+
Sbjct: 216 FVEMPVRNRMSWN-----VMIKGFSQEFDCESAVKIFEWMQREDFKPD 258
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 126/301 (41%), Gaps = 79/301 (26%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR 115
+A + I C + + L+F + PN+F ++A + H AI F+ + +
Sbjct: 25 LIAVKLIGACADHAN-VRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVS 83
Query: 116 A-------EVLLTTV----------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
+ E T+V H V K GF S +FV+ +++D Y +
Sbjct: 84 SPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYL 143
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
++R LFDEM R ++ W MI Y+QN++
Sbjct: 144 L----LARHLFDEMFVRD------------------------RNVVCWNAMIAGYAQNEK 175
Query: 213 FREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
+ +A++ F ++ G + VT+ +VL ACAHLGALDLG+ I +
Sbjct: 176 YSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGN 235
Query: 258 --------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
C + + VF K+ E++++ W+ I LA++G A EA G F M +P
Sbjct: 236 ALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKP 295
Query: 310 N 310
N
Sbjct: 296 N 296
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLF 189
P +D + + F R ++ LF N + D YA+ A +F
Sbjct: 204 PACAHLGALDLGKWIDGFISRREMALGLF---------LGNALADMYAKCGCITEARRVF 254
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
NKM D+ SW+ +I + EA F + G + V +L+AC H G +
Sbjct: 255 NKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVK 314
Query: 250 LG 251
G
Sbjct: 315 KG 316
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 58/231 (25%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV--------------------SRRLFDE-------MPE 168
VF TA+V Y+ + E+RRV RR+ DE MP
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC 314
Query: 169 RKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R A+WNTM+ YA+ A+ +F+ MP D SW M+ +YSQ E L F +
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL----------GRSLLVFF---- 269
+ G ++ A VLS CA + AL+ G+Q++ R + G +LL +
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALEC--GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432
Query: 270 ----------KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ E++++ WN++ A HGF EAL +FD M + +P+
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
A++ Y K E+R LFD MP R +WN M+ YAR ++ LF+ P
Sbjct: 197 NALMSGYVQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPV 252
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ +WT +++ Y+QN EA F+ + S +A
Sbjct: 253 RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY---------------- 296
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
I R + + +F + +N+ WN++ A G EA +FD M ++
Sbjct: 297 -IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 38/207 (18%)
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVS------RRLFDEMPERKFATWNTMIDAYAR-- 183
++ +F DNYSY N + VS R LFDEMP R T+N MI ++A
Sbjct: 87 LAASLFRAIPRPDNYSY-NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG 145
Query: 184 ---LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
LA F+ P D SW M+ +Y +N + EA FN S T D ++ ++S
Sbjct: 146 LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDAISWNALMS 201
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLL--------------------VFFKLREKNLLCWN 280
G + R +++ R GR ++ +F +++ W
Sbjct: 202 GYVQWGKMSEAR--ELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT 259
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ A +G EA +FD M N
Sbjct: 260 AVVSGYAQNGMLEEARRVFDAMPERNA 286
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG++ + G+ FV A++ Y ++R F+EM ER
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA----FEEMEER------------- 447
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW TMI Y+++ +EAL+ F+ + + T D +T+ VL+AC
Sbjct: 448 -------------DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 495 SHSGLVEKG 503
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+ RLF MP R +T+N M+ Y+ LA LF +P D S+ T++ + + +
Sbjct: 57 AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSL 116
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272
+A F++ D VT ++S+ A+ G + L R +F L
Sbjct: 117 ADARGLFDEMPV----RDSVTYNVMISSHANHGLVSLARH--------------YFDLAP 158
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
EK+ + WN + A +G EA G+F+ T
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 31/178 (17%)
Query: 162 LFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216
LF MPE +WN MI ++ +LA LF ++P + SW +MI+ Y +N+ ++ A
Sbjct: 342 LFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGA 401
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------- 257
++ F + + G D+ T++++LSACA G +DL G QI+
Sbjct: 402 MNIFLQMQLEGKKPDRHTLSSILSACA--GLVDLVLGTQIHQLVTKAFIADLPINNSLVT 459
Query: 258 ----CRSLGRSLLVFFKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C ++ + +VF ++ +++++ WN++ A HGFA EAL +FD M NV+P+
Sbjct: 460 MYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPS 517
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 142 MVDNY-SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAW 195
M+ Y S KF E +R +FD+MPE +WNTM+ YA+ AE LFN+MP
Sbjct: 125 MLSGYISCGGKFVER---ARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPER 181
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL-DLGRGI 254
++ SW M++ Y N +A++ F K D ++ ++S L + R +
Sbjct: 182 NVVSWNAMVSGYLMNGHVEKAIEFFKLMPK----RDSASLRALISGLIQNDKLVEAERIL 237
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
Y ++G+ LV +N++ G A+EA +FDR+
Sbjct: 238 LQYGGNVGKGDLVD---------AYNTLIAGYGQKGMAYEARKLFDRI 276
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157
+SLR + + ++ AE +L G V K V ++ Y +E+R+
Sbjct: 215 ASLRALISGLIQNDKLVEAERILLQYGGNVGKGDL---VDAYNTLIAGYGQKGMAYEARK 271
Query: 158 VSRRLFDEMP--------ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
LFD +P R +WN+MI Y R ++ LF+KM D SW TMI
Sbjct: 272 ----LFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264
+ Y Q +EA + F++ + D ++ ++S + +G+L L +
Sbjct: 328 SGYVQILDMKEASNLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDL---------- 373
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++ EK+L+ WNS+ + A+ +F +M E +P+
Sbjct: 374 ---FKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 24/151 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY-SQNKQ 212
+R LFD TWN MI AY + E+ LF +MP DI SW M++ Y S +
Sbjct: 76 ARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGK 135
Query: 213 FRE-ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271
F E A + F++ + +D V+ T+LS A G +D ++ +F ++
Sbjct: 136 FVERARNMFDQMPE----TDCVSWNTMLSGYAKSGMMD-------------KAEELFNEM 178
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRM 302
E+N++ WN++ ++G +A+ F M
Sbjct: 179 PERNVVSWNAMVSGYLMNGHVEKAIEFFKLM 209
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160
RH L +I L VL T +H Q+ F + + + ++V YS E+R V
Sbjct: 417 RHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSRCGAIVEARMV-- 473
Query: 161 RLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
FDEM ++ D+ SW MI Y+ + EAL F
Sbjct: 474 --FDEMNLQR-------------------------DVISWNAMIGGYAYHGFATEALQLF 506
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ K+ +T +VL+ACAH G ++ GR
Sbjct: 507 DLMKQCNVQPSYITFISVLNACAHAGLIEEGR 538
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ K GF +QTA+ + Y+ +E+ +V F +M + W + + Y
Sbjct: 386 IHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV----FSKMANKNVVAWTSFLSMYI 441
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ AE +F++MP ++ SW MI Y+QN + + + K G D+VT+ T
Sbjct: 442 KCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVIT 501
Query: 238 VLSACAHLGALDLGR----------------------GIQIYCRSLGRSLLVFFKLREKN 275
+L AC L L+ G+ G+ C + + VF K+ ++
Sbjct: 502 ILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRD 561
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ HG EA+ +F RM E V PN
Sbjct: 562 TVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPN 596
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 95/196 (48%), Gaps = 27/196 (13%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWD 196
++++ + + +F + + V ++L + E N++I+ Y++ AE +F +M D
Sbjct: 62 VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ +W++MI +Y+ N +A D F + + +++T ++L AC + L+ GR I
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181
Query: 257 YCRSLGR----------------------SLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+++G + VF K+ E+N++ W +I +A A H +E
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241
Query: 295 ALGMFDRMTYENVRPN 310
A ++++M + PN
Sbjct: 242 AFELYEQMLQAGISPN 257
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 129/329 (39%), Gaps = 56/329 (17%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCS--SIKELECVYATIVKT-NANLDCFLAKQFISFCTSR 72
N P ++F+ I LK C+ SI E TIVK D +A I+ S+
Sbjct: 152 NIEPNRITFLSI------LKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITM-YSK 204
Query: 73 FHFIDYTILVFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130
I VF +M E NV + A ++ +H AF LY Q+ +
Sbjct: 205 CGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYE------------QMLQA 252
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----A 185
G S +++++ + RR+ + + E N +I Y + A
Sbjct: 253 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEA 312
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNK-QFREALDA----FNKTKKSGTGSDQVTMATVLS 240
+F++M D+ SW+ MI Y+Q+ + +E++D + ++ G ++VT ++L
Sbjct: 313 REIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
AC GAL+ GR I C S+ + VF K+ KN++
Sbjct: 373 ACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVA 432
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENV 307
W S G A +F M NV
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNV 461
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 133/317 (41%), Gaps = 56/317 (17%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
++ C+ + E V+ + + +D +L I+F S+F + VF +M +
Sbjct: 63 IEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINF-YSKFEDVASAEQVFRRMTLRD 121
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT-AMVDN 145
V + A++ HP +A + M A + + F+ +N
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI------------TFLSILKACNN 169
Query: 146 YSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
YS K R++ + E A +I Y++ E+ +F+KM ++ SW
Sbjct: 170 YSILEK---GRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSW 226
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----- 255
T +I + +Q+++ EA + + + ++G + VT ++L++C AL+ GR I
Sbjct: 227 TAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 286
Query: 256 ---------------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFA-----H 293
+YC+ S+ + +F ++ +++++ W+++ A G+
Sbjct: 287 RGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESID 346
Query: 294 EALGMFDRMTYENVRPN 310
E + +RM E V PN
Sbjct: 347 EVFQLLERMRREGVFPN 363
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 60/250 (24%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANL------------DCFLAKQFISFCTSRFHFID 77
I N KC SI E E V++ + N D A++ S +R + +
Sbjct: 405 IFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTR-NVVS 463
Query: 78 YTILVFPQMQEPNVF-VYHAFSSLR----HP--------LQAIAFYLYMLRAEVLLTTVH 124
+ +++ Q ++ V+ SS++ P L+A + R ++ VH
Sbjct: 464 WNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKL----VH 519
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
+ K G S V T+++ YS + E+R V
Sbjct: 520 AEAVKLGLESDTVVATSLIGMYSKCGQVAEARTV-------------------------- 553
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
F+KM D +W M+ Y Q+ EA+D F + K +++T+ V+SAC+
Sbjct: 554 ----FDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSR 609
Query: 245 LGALDLGRGI 254
G + GR I
Sbjct: 610 AGLVQEGREI 619
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 144/336 (42%), Gaps = 73/336 (21%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
H I +L+KC ++ L+ V+A ++ T + + ++ TS Y +F +
Sbjct: 6 HPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLN--TSSKFASTYAFTIFNHIP 63
Query: 88 EPNVFVYHAF-SSLRHPLQAI--AFYLY--MLRAEVLLTT-------------------- 122
P +F+Y+ SSL H I AF LY +L + L
Sbjct: 64 NPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHG 123
Query: 123 --VHGQVWKNGFSSPV---FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
+H V K F P FVQ ++++ Y+ K VSR LFD++ E ATWNTM
Sbjct: 124 PPLHAHVLK--FLQPPYDPFVQNSLLNFYAKYGKLC----VSRYLFDQISEPDLATWNTM 177
Query: 178 IDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ AYA+ A S + TS+ EAL F + S ++VT+
Sbjct: 178 LAAYAQSA-------------SHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVA 224
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
++SAC++LGAL G Y C L + +F +L +++
Sbjct: 225 LISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRD 284
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C+N++ A+HG ++AL ++ M E++ P+G
Sbjct: 285 TFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDG 320
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 134/311 (43%), Gaps = 71/311 (22%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHAFSSLR----HPLQAIAFYLYMLRAEVL--LTTVH 124
+RF I +F QM NV ++A + H +AI+ ++ M + T ++
Sbjct: 244 ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVIN 303
Query: 125 GQVWKNGFSSP-----------VFVQTAMVDNYSYSNKFFESRRV--------------- 158
G V V QTAM+ Y + + ++R++
Sbjct: 304 GYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTM 363
Query: 159 ------------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
+ LF +M ++ +WNTM+ +YA++ ++ +F +M +I SW
Sbjct: 364 IAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWN 423
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------- 253
++I+ +QN + +AL +F G DQ T A LS+CAHL AL +G+
Sbjct: 424 SLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKS 483
Query: 254 ------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
I +Y C S+ + L+F + +++ WNS+ A A++G EAL +F
Sbjct: 484 GYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLF 543
Query: 300 DRMTYENVRPN 310
+M E V P+
Sbjct: 544 HKMEVEGVAPD 554
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 23/185 (12%)
Query: 76 IDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP 135
+D I +F +M+E N+ +++SL L YL L++ +L+ G
Sbjct: 404 MDAAIKIFEEMKEKNIV---SWNSLISGLTQNGSYLDALKSFMLM----------GHEGQ 450
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT----WNTMIDAYARL-----AE 186
Q+ S S + +V ++L + + +AT N +I YA+ AE
Sbjct: 451 KPDQSTFACGLS-SCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAE 509
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LLF + +D+ SW ++I +Y+ N REAL F+K + G D+VT +LSAC+H+G
Sbjct: 510 LLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVG 569
Query: 247 ALDLG 251
+D G
Sbjct: 570 LIDQG 574
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 143 VDNYSYSNKFFESRRVS--RRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAW 195
V + S + F ++ R+S R+LFD MP+R +WN+MI AY A LF+KMP
Sbjct: 47 VTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTR 106
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D+ SWT MIT Y++N + +A + FN + V +++ A D R +
Sbjct: 107 DLYSWTLMITCYTRNGELAKARNLFNLLPYKW---NPVCCNAMVAGYAKNRQFDEARRL- 162
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
F + K+L+ WNS+ +G L F+ M +V
Sbjct: 163 ------------FDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV 202
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 58/205 (28%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYARLAEL----------------------------- 187
R+ + F+EM ER +WN M+D + + +L
Sbjct: 188 RLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFG 247
Query: 188 -------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
LF++MP ++ +W MI +Y QN EA+ F + + + ++ TV++
Sbjct: 248 KIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNS----ISWTTVIN 303
Query: 241 ACAHLGALDLGRGI------------------QIYCRSLGRSLLVFFKLREKNLLCWNSI 282
+G LD R + + + + + +F ++ ++++CWN++
Sbjct: 304 GYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTM 363
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
+ G EAL +F +M +++
Sbjct: 364 IAGYSQCGRMDEALHLFKQMVKKDI 388
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 58/205 (28%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL------------ 187
+M+ Y ++++ E+R+ LFD+MP R +W MI Y R EL
Sbjct: 81 NSMIAAYLHNDRVEEARQ----LFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPY 136
Query: 188 -------------------------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
LF+ MPA D+ SW +M+T Y++N + R L F +
Sbjct: 137 KWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEE 196
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSI 282
+ D V+ ++ +G L+ S F K+ N + W ++
Sbjct: 197 MAE----RDVVSWNLMVDGFVEVGDLN-------------SSWEFFEKIPNPNTVSWVTM 239
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
A G EA +FD+M NV
Sbjct: 240 LCGFARFGKIAEARRLFDQMPIRNV 264
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+++D Y + +++ LF MP R TW TMID YA+L A+ LF++MP
Sbjct: 234 NSLIDGYVKHGRMEDAKD----LFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 289
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ FN +K S D+ T+ VLSA A LG L
Sbjct: 290 RDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMS 349
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ Y C S+ +++ VF ++ K++ WN++ LAIHG
Sbjct: 350 MNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGH 409
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 410 GELAFDMLMQIERCSIKPD 428
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +R++FD MP+R ++N+MID Y
Sbjct: 121 IHGFLRKTGIWSDLFLQNCLIGLYLKCGCL----GFARQIFDRMPQRDSVSYNSMIDGYV 176
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q + ++ +K D ++
Sbjct: 177 KCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTS---DGVNIASKLFAEMPEKDLISW 233
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
+++ G ++ + + F+ + ++++ W ++ + A GF H+A
Sbjct: 234 NSLIDGYVKHGRMEDAKDL-------------FYVMPRRDVVTWATMIDGYAKLGFVHKA 280
Query: 296 LGMFDRMTYENV 307
+FD+M + +V
Sbjct: 281 KTLFDQMPHRDV 292
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 58/252 (23%)
Query: 82 VFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
+F +M+E V V PL + YL++ R ++HGQ K G S V V +
Sbjct: 143 MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGR------SLHGQCVKGGLDSEVAVLNS 196
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWT 201
+ Y S RRLFDEMP + TWN
Sbjct: 197 FITMYMKCG----SVEAGRRLFDEMPVKGLITWN-------------------------- 226
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR--------- 252
+I+ YSQN + L+ + + K SG D T+ +VLS+CAHLGA +G
Sbjct: 227 AVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESN 286
Query: 253 -----------GIQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
I +Y C +L ++ VF + K+L+ W ++ +HG L +F
Sbjct: 287 GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLF 346
Query: 300 DRMTYENVRPNG 311
D M +RP+G
Sbjct: 347 DDMIKRGIRPDG 358
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N I YAR L +F+ MP + SWT MI Y + L F+ K G
Sbjct: 296 NASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIR 355
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D VLSAC+H G D +G++++ R++ R +KL E ++ + + L
Sbjct: 356 PDGAVFVMVLSACSHSGLTD--KGLELF-RAMKRE----YKL-EPGPEHYSCLVDLLGRA 407
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G EA+ + M E P+G
Sbjct: 408 GRLDEAMEFIESMPVE---PDG 426
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 50/210 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V K G + FV TA++ Y ++R+V F+E P+ +
Sbjct: 75 LHCHVTKGGCETEPFVLTALISMYCKCGLVADARKV----FEENPQSSQLSV-------- 122
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ +I+ Y+ N + +A F + K++G D VTM ++ C
Sbjct: 123 ----------------CYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLC 166
Query: 243 AHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWN 280
L LGR + + C S+ +F ++ K L+ WN
Sbjct: 167 TVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWN 226
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + +G A++ L ++++M V P+
Sbjct: 227 AVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
>gi|255541938|ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 319
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 30/175 (17%)
Query: 166 MPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
MPER TWNTMI Y+R + F +MP D+ SW+ MIT+Y + ++ L F
Sbjct: 1 MPERNTITWNTMITGYSRSGNIDKARAFFEEMPLRDVGSWSAMITAYINHGRWDRGLLLF 60
Query: 221 NKT-KKSGTGSDQVTMATVLSACAHLGALDLGRG------------------------IQ 255
+ S DQVT+ TVLS C H+G L L G +
Sbjct: 61 REMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWELNVEIGTVLVDMY 120
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ C L ++ VF ++E+N++ W ++ A HG++ E L +F+ M +RPN
Sbjct: 121 VKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPN 175
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+ HG + KN + V + T +VD Y + RV FD M ER
Sbjct: 96 SAHGFIMKNRWELNVEIGTVLVDMYVKCGYLKNAIRV----FDLMKER------------ 139
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
++ +WT +I +Q+ E L FN +++ +++T +L+
Sbjct: 140 --------------NVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNELTFTGILNV 185
Query: 242 CAHLGALDLGR 252
CAH G ++ G+
Sbjct: 186 CAHSGLVEEGK 196
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 30/214 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH G VFV TA+VD Y+ N ES + +FDEMP + N +I Y+
Sbjct: 141 VHCHALVRGLLGDVFVLTALVDFYA-KNGDMES---AVSVFDEMPVKDPIPINCLITGYS 196
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ ++ LF+ M SW +MI Y+ +FREAL F++ G + +T+ +
Sbjct: 197 KAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITS 256
Query: 238 VLSACAHLGALDLGRGIQ---------------------IYCRSLGRSLLVFFKLREKNL 276
V S CA G LD G+ ++ + CR++ + F ++ ++++
Sbjct: 257 VFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDV 316
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ A +G E+L +F+RM + RPN
Sbjct: 317 VAWSTMIAGYAQNGRPLESLELFERMKATDCRPN 350
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 22/144 (15%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F++M D+ +W+TMI Y+QN + E+L+ F + K + ++VT+ V+SACA LG+
Sbjct: 308 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSD 367
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+L I Y C +GR+ VF ++ +K ++ WNS+ L
Sbjct: 368 ELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGL 427
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A++GFA +A+ ++++M V+PN
Sbjct: 428 AMNGFAEDAISLYEKMAENGVQPN 451
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y R + +F++M + +W +MI + N +A+ + K ++G
Sbjct: 390 SALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQ 449
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+++T +L+AC H G +D G
Sbjct: 450 PNEITFVALLAACTHAGLVDQG 471
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 15/162 (9%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNK 211
++ +L++ + E+ TM+ YA+ +A +FN MP D+ SW+ MI Y+++
Sbjct: 222 EMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESS 281
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--CRSLGRSLLVFF 269
+ EAL+ F+ ++SG D++TM ++L L I ++ C SL +L VF
Sbjct: 282 KPMEALNLFHDMQRSGVQPDEITMLSILPIGNAL--------IDMFSKCGSLTLALDVFN 333
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ +KN++ W SI A A+HG AL +F+ M E ++PNG
Sbjct: 334 AMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNG 375
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 30/136 (22%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
HG ++ G FV TA+V Y+ + ++R+V FD MP+R W M+D Y
Sbjct: 90 AAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKV----FDGMPDRDLVAWGVMLDCY 145
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
Q + + EAL F+ K+S DQV +ATVLS
Sbjct: 146 C--------------------------QARNYEEALLLFHSMKRSRVVPDQVIIATVLST 179
Query: 242 CAHLGALDLGRGIQIY 257
CAH L G+ I Y
Sbjct: 180 CAHTRNLRFGKAIHSY 195
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 90/247 (36%), Gaps = 79/247 (31%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR------------ 183
+ + T MV Y+ + K ++ +F+ MPE+ +W+ MI YA
Sbjct: 236 IVLSTTMVYGYAKNGKV----EIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFH 291
Query: 184 -----------------------------------LAELLFNKMPAWDIRSWTTMITSYS 208
LA +FN MP ++ +WT++IT+ +
Sbjct: 292 DMQRSGVQPDEITMLSILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASA 351
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR-----GIQIY------ 257
+ R AL F K G + VT +L AC H G ++ GR +Q Y
Sbjct: 352 MHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMH 411
Query: 258 ------CRSLGRS--------LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
LGR+ L+ LR N++ W S+ A +HG LG F
Sbjct: 412 EHYGCMVDLLGRAKLLGQAADLIQSMHLR-PNVVIWGSLLAACRMHGDLE--LGAFAAKK 468
Query: 304 YENVRPN 310
+ PN
Sbjct: 469 ILELDPN 475
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 115/278 (41%), Gaps = 80/278 (28%)
Query: 82 VFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
+F Q+ +P F Y++ ++ P A+A Y MLRA
Sbjct: 82 LFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139
Query: 123 --------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+H Q + G ++ +VQT +++ Y+ E ++R +FD M K
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKC----EQVALARTVFDGMAGDK---- 191
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
++ +W+ M++ YS+ EAL F + + G D+VT
Sbjct: 192 ---------------------NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVT 230
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
M +V+SACA GALDLG+ + Y C + R+ VF +
Sbjct: 231 MVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMV 290
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
EK+ W+++ AIHG +ALG+F RM VRPN
Sbjct: 291 EKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPN 328
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ A +F+ M D ++W+ MI ++ + +AL F++ +
Sbjct: 268 ALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRP 327
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT VLSACAH G ++ GR
Sbjct: 328 NNVTFIGVLSACAHSGLVEDGR 349
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 34/205 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFN 190
V +M+ YS +R+ +FD MPER +WN+M+D YA+ +A L+F+
Sbjct: 219 VVTWNSMISGYSRHGDMENARK----MFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFD 274
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249
MP I SW ++ Y++ + +RE L F+ G T ++ T +VL+ACA+LG L+
Sbjct: 275 GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLE 334
Query: 250 LGRGIQ------------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEA 285
GR + C + + +F + EK++ WNS+
Sbjct: 335 KGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIG 394
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
+HG + +AL +F M + RPN
Sbjct: 395 YGLHGQSEKALELFLEMERDGPRPN 419
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRL ++P TWNT++ A RL L LF++MP D+ S+ +M+ Y
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDL 204
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
A + F+ + D VT +++S + G ++ R + F + E
Sbjct: 205 AGARNLFDGMAR----RDVVTWNSMISGYSRHGDMENARKM-------------FDAMPE 247
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++++ WNS+ + A G A +FD M ++
Sbjct: 248 RDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSI 281
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +FN M + SW +MI Y + Q +AL+ F + ++ G ++ T VLS+CAH
Sbjct: 373 AREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAH 432
Query: 245 LG 246
G
Sbjct: 433 GG 434
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 126/318 (39%), Gaps = 68/318 (21%)
Query: 25 IRIHIIANQLKKCSSIK----ELECVYATIVKTN------ANLDCFLAKQFISFCTSRFH 74
+ HII + + S+ L C +I T N D FL I + +
Sbjct: 31 VHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHN 90
Query: 75 FIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS 134
F Y++ + +M NV S + ++ L A VHG V +GF
Sbjct: 91 FSIYSLYFYSRMVLSNV------SPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGL 144
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA 194
V+VQ A+V Y +R+V FD++ ER WN+
Sbjct: 145 DVYVQAALVALYGKCGDLINARKV----FDKIRERSIVAWNS------------------ 182
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
MI+ Y QN +EA+ F++ K++G D T +VLSACAHLGA LG +
Sbjct: 183 --------MISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWV 234
Query: 255 QIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
Y C ++ ++ VF ++E+N++ W ++ +G+
Sbjct: 235 HEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYG 294
Query: 293 HEALGMFDRMTYENVRPN 310
+A+ +F M + PN
Sbjct: 295 SQAVELFHEMRRNGLFPN 312
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 34/205 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFN 190
V +M+ YS +R+ +FD MPER +WN+M+D YA+ +A L+F+
Sbjct: 219 VVTWNSMISGYSRHGDMENARK----MFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFD 274
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249
MP I SW ++ Y++ + +RE L F+ G T ++ T +VL+ACA+LG L+
Sbjct: 275 GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLE 334
Query: 250 LGRGIQ------------------------IYCRSLGRSLLVFFKLREKNLLCWNSITEA 285
GR + C + + +F + EK++ WNS+
Sbjct: 335 KGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIG 394
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
+HG + +AL +F M + RPN
Sbjct: 395 YGLHGQSEKALELFLEMERDGPRPN 419
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRL ++P TWNT++ A RL L LF++MP D+ S+ +M+ Y
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDL 204
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
A + F+ + D VT +++S + G ++ R + F + E
Sbjct: 205 AGARNLFDGMAR----RDVVTWNSMISGYSRHGDMENARKM-------------FDAMPE 247
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++++ WNS+ + A G A +FD M ++
Sbjct: 248 RDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSI 281
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +FN M + SW +MI Y + Q +AL+ F + ++ G ++ T VLS+CAH
Sbjct: 373 AREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAH 432
Query: 245 LG 246
G
Sbjct: 433 GG 434
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 39/306 (12%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
LKKCS+++E + +A I+K D F A ++ C S + +DY +F QM E F
Sbjct: 38 LKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSF 97
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
++ +R ++ M E L+T + ++ + G F ++ +
Sbjct: 98 QFNTM--MRGHVKD------MNTEEALIT--YKEMAERGVKPDNFTYPTLLKACARLPAV 147
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSY 207
E +V + E N++I Y + E+ +F +M + SW+ +IT++
Sbjct: 148 EEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAH 207
Query: 208 SQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRG------------- 253
+ + + L G +++ + +VLSAC HLGALDLGR
Sbjct: 208 ASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLN 267
Query: 254 -------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
I++Y C SL + + +F K+ +KN L ++ + LA+HG+ E L +F M
Sbjct: 268 VIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLE 327
Query: 305 ENVRPN 310
+ + P+
Sbjct: 328 QGLEPD 333
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 22/235 (9%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ + +E V+A I+K D F+ IS + I VF QM E +
Sbjct: 138 LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISM-YGKCGEIGVCCAVFEQMNERS 196
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF-SSPVFVQTAMVDNYSYS 149
V + A + L + L +L G + G+ + + +++ ++
Sbjct: 197 VASWSALITAHASLGMWSDCLRLL----------GDMSNEGYWRAEESILVSVLSACTHL 246
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
R V L + ++I+ Y + L LF KM + S++ MI
Sbjct: 247 GALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMI 306
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
+ + + RE L F + + G D + VL+AC+H G + G+Q + R
Sbjct: 307 SGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQ--EGLQCFNR 359
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 120/273 (43%), Gaps = 45/273 (16%)
Query: 69 CTSRFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVH 124
C +R+H + I F +M +PN F + LQ + +H
Sbjct: 366 CFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSG----------RQLH 415
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
K G S VFV +A+VD Y+ E+++ F++ E ++ T+I Y +
Sbjct: 416 ACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKA----FEDTHEPNVVSYTTLIRGYLKK 471
Query: 185 -----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
A LF KMP ++ SW MI+ YSQ EA++ F + GT ++ T +
Sbjct: 472 ERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAI 531
Query: 240 SACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLL 277
SA A++ AL +GR + Y C S+ SLLVF L +KN++
Sbjct: 532 SAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIV 591
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ A HG EA+ F++M +RPN
Sbjct: 592 SWNALICGYANHGRGMEAIYFFEKMQDTGLRPN 624
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N+++ YA+ L+FN +P +I SW +I Y+ + + EA+ F K + +G
Sbjct: 563 NSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLR 622
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT+ +L AC H G +D G
Sbjct: 623 PNSVTLLGLLLACNHSGLVDKG 644
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG + + G ++V T+++ Y + ++ +V FD M R ++WN ++ Y
Sbjct: 156 VHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV----FDNMTIRDVSSWNALLAGYT 211
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK--SGTGSDQVTM 235
+ A +F +MP +I SWTTMI+ YSQ+ ++AL F++ K SG + VT+
Sbjct: 212 KSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTI 271
Query: 236 ATVLSACAHLGALDLGRGI-QIYCR---------------------SLGRSLLVFFKL-- 271
+VL ACA L L+ GR I ++ CR SL + F KL
Sbjct: 272 MSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNR 331
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
EKNL+ WN++ A A +G +A+ F M ++P+
Sbjct: 332 NEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPD 370
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+A +++DA +L N+ ++ +W TMIT+Y+ +A+ F + ++G
Sbjct: 313 YAKCGSLVDARNCFDKLNRNEK---NLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQP 369
Query: 231 DQVTMATVLSACAHLGALDLG 251
D +T +LS C+H G +D+G
Sbjct: 370 DDITFTGLLSGCSHSGLVDVG 390
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 133/327 (40%), Gaps = 82/327 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVF-----PQMQ 87
L+ C+++ L+ + A ++ ++ ++FC S + Y +F PQ Q
Sbjct: 16 LQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQ 75
Query: 88 EPNVFVYHAFSSLRHPLQAIAFYLYML----------------------RAEVLLTTVHG 125
N + F+ P+QAI +Y ML +A VHG
Sbjct: 76 AWNSII-RGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHG 134
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
+ + G+ V V T +V Y N E ++R +FD MPER WN
Sbjct: 135 SIIRTGYERDVVVCTGLVRCYG-RNGCVE---IARMVFDNMPERDLVAWN---------- 180
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
MI+ YSQ +EAL ++ + G D T+ +LS+C+H+
Sbjct: 181 ----------------AMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHV 224
Query: 246 GALDLG---------RG-----------IQIY--CRSLGRSLLVFFKLREKNLLCWNSIT 283
GAL++G +G I +Y C SL +L VF + ++ WNS+
Sbjct: 225 GALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGM-PRDAFTWNSMI 283
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+HGF EA+ F++M VRPN
Sbjct: 284 VGFGVHGFGDEAIYFFNQMLEAGVRPN 310
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 28/230 (12%)
Query: 34 LKKCSSIKEL---ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C IK L E V+ +I++T D + + C R ++ +VF M E +
Sbjct: 117 LKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVR-CYGRNGCVEIARMVFDNMPERD 175
Query: 91 VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
+ ++A +S + +A+ Y YM V V G F ++ +
Sbjct: 176 LVAWNAMISCYSQAGYHQEALRVYDYMRNENV---GVDG-----------FTLVGLLSSC 221
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
S+ ++ R ++ R N +ID YA+ L +FN MP D +W
Sbjct: 222 SHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMPR-DAFTWN 280
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+MI + + EA+ FN+ ++G + + +L C+H G ++ G
Sbjct: 281 SMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEG 330
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACA 243
A+ LF + ++W ++I ++Q+ +A+ +N+ S +G D T + L AC
Sbjct: 62 AQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACE 121
Query: 244 HLGALDLGRGIQ------------IYCRSLGR----------SLLVFFKLREKNLLCWNS 281
+ AL + + C L R + +VF + E++L+ WN+
Sbjct: 122 RIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNA 181
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + G+ EAL ++D M ENV +G
Sbjct: 182 MISCYSQAGYHQEALRVYDYMRNENVGVDG 211
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 144/326 (44%), Gaps = 52/326 (15%)
Query: 34 LKKCSS---IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS +KE V+ ++KT D FL I + F+ + VF +M E +
Sbjct: 113 LKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYI-KCGFLGFARQVFDRMPERD 171
Query: 91 VFVYHAF--SSLRHPLQAIAFYLY--MLRAEVLLTTVHGQVWKNGFS---SPVFVQTAMV 143
Y++ ++ L A L+ M R + L T + + G++ V V +
Sbjct: 172 SVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMI--GGYAQRADGVDVAEKLF 229
Query: 144 DNY---------SYSNKFFESRRV--SRRLFDEMPERKFATWNTMIDAYARL-----AEL 187
D S + + R+ ++ LF+ MP R TW MID Y +L A+
Sbjct: 230 DEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKT 289
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLG 246
LF++MP D+ ++ +M++ Y QN+ EAL+ FN K+S D+ ++ VLSA A LG
Sbjct: 290 LFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLG 349
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
L + +Y C S+ ++ VF + K++ WN++
Sbjct: 350 RLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIG 409
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
LA+HG A M ++ +++P+
Sbjct: 410 GLAVHGLGESAFDMLFQIERRSIKPD 435
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 122 TVHGQVWK--NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
VHG V++ F + A+VD Y+ + RV R + + A W +++
Sbjct: 202 VVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVR---NGNGKSGVAAWTSLVS 258
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
AYA E+ LF++M D+ SWT MI+ Y F+EAL+ F + + G D+V
Sbjct: 259 AYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVV 318
Query: 235 MATVLSACAHLGALDLGRGIQ----------------------IY--CRSLGRSLLVFFK 270
+ LSACA LGAL+LGR I +Y C S+ +L VF K
Sbjct: 319 VVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLK 378
Query: 271 LRE--KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ K +NSI LA HG A+ +F+ M + P+
Sbjct: 379 TSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPD 420
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 124/311 (39%), Gaps = 83/311 (26%)
Query: 50 IVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPL 104
+V T + D FL ISF + + + ++ L+F Q+ P++F+++ AFS + P
Sbjct: 1 MVVTGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPH 60
Query: 105 QAIAFYLYMLRAEV-----------------------LLTTVHGQVWKNGFSSPVFVQTA 141
A++ Y ML + L VH V+K+GF S VFV A
Sbjct: 61 NALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNA 120
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWT 201
++ Y F R + R+FDE P R ++NT+I+ R R+
Sbjct: 121 LLQVYF----VFGDARNACRVFDESPVRDSVSYNTVINGLVRAG------------RAGC 164
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ-IYCRS 260
+M + F E F + D+ T +LSAC+ L +GR + + R
Sbjct: 165 SM-------RIFAEMRGGFVEP-------DEYTFVALLSACSLLEDRGIGRVVHGLVYRK 210
Query: 261 LG----RSLLV-----------FFKLREK---------NLLCWNSITEALAIHGFAHEAL 296
LG LLV ++ E+ + W S+ A A+ G A
Sbjct: 211 LGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVAR 270
Query: 297 GMFDRMTYENV 307
+FD+M +V
Sbjct: 271 RLFDQMGERDV 281
>gi|356519999|ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Glycine max]
Length = 629
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K+G+SS + V+ +M+ Y+ E + + ++F+ +WN +IDA+
Sbjct: 227 VHGFVIKSGWSSAMEVKNSMLSFYAK----LECQDDAMKVFNSFGCFNQVSWNAIIDAHM 282
Query: 183 RLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+L + L F K P +I SWT+MI Y++N AL F ++ D +
Sbjct: 283 KLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGA 342
Query: 238 VLSACAHLGALDLGR---------GIQIY-------------CRSLGRSLLVFFKLREKN 275
VL ACA L L GR G+ Y C + S L F + +K+
Sbjct: 343 VLHACASLAILVHGRMVHGCIIRHGLDKYLYVGNSLVNMYAKCGDIKGSRLAFHDILDKD 402
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ WNS+ A +HG A+EA+ ++ M V+P+
Sbjct: 403 LISWNSMLFAFGLHGRANEAICLYREMVASGVKPD 437
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T+H V +G+ S + V +++D Y ++R+V FDE + TW +++ A
Sbjct: 93 ATLHALVVVSGYLSSLPVANSLIDMYGKCLLPDDARKV----FDETSDSNEVTWCSLMFA 148
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
YA L LF MP + +W MI +++ + L F + S DQ T
Sbjct: 149 YANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEACLHLFKEMCGSLCQPDQWTF 208
Query: 236 ATVLSACA 243
+ +++ACA
Sbjct: 209 SALINACA 216
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++++ YA+ + L F+ + D+ SW +M+ ++ + + EA+ + + SG
Sbjct: 376 NSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVK 435
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT +L C+HLG + G
Sbjct: 436 PDEVTFTGLLMTCSHLGLISEG 457
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+++P D +W M+T+YS ++++L F + S + D + + VL+ACA
Sbjct: 24 ARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDNFSFSAVLNACAC 83
Query: 245 LGA 247
GA
Sbjct: 84 AGA 86
>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g36980, mitochondrial; Flags: Precursor
gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 625
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + KNG+SS V + +++ Y+ SR + R + + +WN++IDA
Sbjct: 227 VHAVMLKNGWSSAVEAKNSVLSFYTK----LGSRDDAMRELESIEVLTQVSWNSIIDACM 282
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ E +F+ P +I +WTTMIT Y +N +AL F + KSG SD
Sbjct: 283 KIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGA 342
Query: 238 VLSACAHLGALDLGR---------GIQIY-------------CRSLGRSLLVFFKLREKN 275
VL AC+ L L G+ G Q Y C + + F + K+
Sbjct: 343 VLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKD 402
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ WN++ A +HG A +AL ++D M ++P+
Sbjct: 403 LVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPD 437
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F+ MP D +W TM+TSYS+ +EA+ F + + S D + +LS CA
Sbjct: 23 ARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCAS 82
Query: 245 LGALDLGRGIQ 255
LG + GR IQ
Sbjct: 83 LGNVKFGRKIQ 93
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +++ YA+ ++ F + D+ SW TM+ ++ + +AL ++ SG
Sbjct: 376 NALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIK 435
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT +L+ C+H G ++ G
Sbjct: 436 PDNVTFIGLLTTCSHSGLVEEG 457
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Query: 71 SRFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
SR I +F Q++ +P+ + + A S L + F +
Sbjct: 46 SRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCASLGNVKFG----------RKIQSL 95
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V ++GF + + V +++D Y + + +V R + + R TW +++ AY +
Sbjct: 96 VIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCD--SRNEVTWCSLLFAYMNAEQ 153
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+F +MP +W MI+ ++ + L F + +S D T +++++A
Sbjct: 154 FEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNA 213
Query: 242 CA 243
C+
Sbjct: 214 CS 215
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG ++G +FV +A+V Y+ S R +R +FD MP R +WN ++ AY
Sbjct: 201 IHGFAVRHGMVVNLFVCSALVSLYAKC----LSVREARMVFDLMPHRDVVSWNGVLTAYF 256
Query: 183 RLAEL-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ E LF KM +R +W +I +N + EA++ F K +K G +++
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 316
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T++++L AC+ L +G+ I Y C L S VF +
Sbjct: 317 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 376
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R K+++ WN++ A A+HG EAL +FD+M V+PN
Sbjct: 377 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPN 415
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + G S VFV A++ Y K E +RR+FD++ R
Sbjct: 100 VHDDATRCGVMSDVFVGNALIHAYGKC-KCVEG---ARRVFDDLVVR------------- 142
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SWT++ + Y + R+ +D F + SG + +T++++L AC
Sbjct: 143 -------------DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 189
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A L L G+ I + C S+ + +VF + ++++ WN
Sbjct: 190 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 249
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ A + + +F +M+ + VR +
Sbjct: 250 GVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 279
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ K GF ++++ S+S + + +F + ++ YA+
Sbjct: 305 KMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCG 364
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+L +F+ M D+ +W TMI + + + +EAL F+K S + VT VLS
Sbjct: 365 DLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLS 424
Query: 241 ACAHLGALDLGRGIQIYCRSLGRSLLV 267
C+H ++ G+QI+ S+GR LV
Sbjct: 425 GCSHSRLVE--EGVQIF-NSMGRDHLV 448
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA- 243
A LF+ +P D + +T+I++ + + EA+ ++ ++ G D ACA
Sbjct: 31 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90
Query: 244 ----------HLGALDLGRGIQIY-----------CRSLGRSLLVFFKLREKNLLCWNSI 282
H A G ++ C+ + + VF L ++++ W S+
Sbjct: 91 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+ GF + + +F M + V+PN
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGWSGVKPN 178
>gi|357483883|ref|XP_003612228.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513563|gb|AES95186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 665
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 60/325 (18%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP-NV 91
Q C + L + + ++ ++ + FL++ +S S +D+T L+F P +
Sbjct: 44 QPSHCQTTHHLLQIQSLLITSSFYRNPFLSRTLLSR-ASNLCTVDFTFLIFHHFNNPLDT 102
Query: 92 F----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQ 126
F V +++ + P +AI FY L+ + HGQ
Sbjct: 103 FCVNTVINSYCNSYVPHKAIVFYFSSLKIGFFANSYTFVSLISACSKMSCVDNGKMCHGQ 162
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
KNG + V+ ++ Y S + E V+R +FD M R +WN+MID Y ++ +
Sbjct: 163 AVKNGVDFVLPVENSLAHMYG-SCGYVE---VARVMFDGMVSRDLVSWNSMIDGYVKVGD 218
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L LF+ MP ++ +W +I+ YS+ + AL F + + + TM ++A
Sbjct: 219 LSAAHKLFDVMPERNLVTWNCLISGYSKGRNPGYALKLFREMGRLRIRENARTMVCAVTA 278
Query: 242 CAHLGALDLGRG--------------------IQIYCRSLGR---SLLVFFKLREKNLLC 278
C G L G+ I +YC+ GR + VF ++ +NL+
Sbjct: 279 CGRSGRLKEGKSVHGSMIRLFMRSSLILDTALIDMYCKC-GRVEAASKVFERMSSRNLVS 337
Query: 279 WNSITEALAIHGFAHEALGMFDRMT 303
WN++ IHG + L +FD M
Sbjct: 338 WNAMILGHCIHGNPEDGLSLFDLMV 362
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 60/263 (22%)
Query: 75 FIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEVLL---------- 120
IDY +F Q+Q PN+F+++A S ++P QA FY+ R +L
Sbjct: 16 LIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVK 75
Query: 121 -----------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
+ HG + K+GF V+VQ ++V ES +R+LFD+MPE+
Sbjct: 76 SCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVES---ARKLFDQMPEK 132
Query: 170 KFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
TW+TMI YA QN F +A++ F + G
Sbjct: 133 NLVTWSTMISGYA--------------------------QNNHFDKAVELFKVLQSQGVR 166
Query: 230 SDQVTMATVLSACAHLGALDLGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+++ M V+ L L LG + +Y C S+ +++ VF L E++ L W ++ L
Sbjct: 167 ANETVM--VIKNGMTLN-LILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGL 223
Query: 287 AIHGFAHEALGMFDRMTYENVRP 309
A+HG++ +L F M + P
Sbjct: 224 AMHGYSERSLKYFATMVEAGLTP 246
>gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g09220, mitochondrial; Flags: Precursor
gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana]
gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana]
gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana]
gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana]
gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K GF S V+VQTA+V Y ++ +V FDEMPER TWN MI L +
Sbjct: 151 KLGFESHVYVQTALVGMYLVGGNMIDAHKV----FDEMPERNPVTWNVMITGLTNLGDFE 206
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSAC 242
KMP + SWTT+I Y++ + +EA+ F++ +++T+ +L A
Sbjct: 207 KALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAV 266
Query: 243 AHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLR--EKNLL 277
+LG L + + Y C + + F ++ KNL+
Sbjct: 267 WNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLV 326
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ A AIHG EA+ MF M ++PN
Sbjct: 327 SWTTMISAFAIHGMGKEAVSMFKDMERLGLKPN 359
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
N++IDAYA+ + F ++P ++ SWTTMI++++ + +EA+ F ++ G
Sbjct: 296 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 355
Query: 228 TGSDQVTMATVLSACAHLG 246
++VTM +VL+AC+H G
Sbjct: 356 LKPNRVTMISVLNACSHGG 374
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
TVH + ++G V ++ A+VD + ++ V FD MP + +W +M+ AY
Sbjct: 254 TVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEV----FDGMPIKDVYSWTSMVSAY 309
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ +L LF ++P ++ SW+ M+ +YS EA+ FN +G T+
Sbjct: 310 AKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLV 369
Query: 237 TVLSACAHLGALDLGRG---------------------IQIY--CRSLGRSLLVFFKLRE 273
+VLSACA L +LD+G I ++ C +G + +F + +
Sbjct: 370 SVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMED 429
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
KN++ WN++ A +HG EAL +F + P+
Sbjct: 430 KNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPD 466
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 77/341 (22%)
Query: 15 KNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRF 73
+ ++ T+ + + H + + L+ C+S + L + A + + + F A + ++FC S
Sbjct: 19 RPAWNTNCNLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDP 78
Query: 74 HFIDYTILVFPQMQE-PNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT------ 122
+ + V Q E PN ++ F P A+ + +LR + +
Sbjct: 79 PRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFA 138
Query: 123 -------------VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
+H +K GF V A+V Y+ S ++R+ LFDEM +
Sbjct: 139 VKAAATSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARK----LFDEMAD 194
Query: 169 RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
R +W T+ID YAR +P R + M+ + S
Sbjct: 195 RDVVSWTTLIDGYAR------GGLPDEAWRVFCRMVVAES-------------------V 229
Query: 229 GSDQVTMATVLSACAHLGALDLGRGI-QIYCRSLGRSLL--------------------- 266
++VT+ SA +G L LGR + Q S GR +
Sbjct: 230 WPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKE 289
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
VF + K++ W S+ A A G A +F + NV
Sbjct: 290 VFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV 330
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ID +A+ ++ LF+ M ++ SW TMI ++ + Q EAL F + K +G
Sbjct: 405 NAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGIL 464
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+ T VLSAC+H G + GR
Sbjct: 465 PDEATYIGVLSACSHGGLVSEGR 487
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R FD MPE+ +WNTM+ AYAR L LF++MP+ + +W +MIT Q+
Sbjct: 158 ARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHC 217
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------- 257
EAL F+ SG ++ + + +SAC L ++ G + Y
Sbjct: 218 EEALRVFSDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATA 277
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++ VF + +N+ WNS+ LA++G +AL +F +M VRPN
Sbjct: 278 IVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPN 337
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y + + +F MP +I SW +MI + N R+AL F K + +G
Sbjct: 277 AIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRP 336
Query: 231 DQVTMATVLSACAHLGALDLGR----------GIQ-------IYCRSLGRSLLV-----F 268
+ +T +LSAC+H G +D GR GIQ + LGRS V F
Sbjct: 337 NDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDF 396
Query: 269 FKLR--EKNLLCWNSITEALAIHG 290
K E + W ++ A IHG
Sbjct: 397 VKSMPVEPHPGLWGALAGACKIHG 420
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 80/278 (28%)
Query: 82 VFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
+F Q+ +P F Y++ ++ P A+A Y MLRA
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 188
Query: 123 --------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+H Q + G ++ +VQT +++ Y+ + ++R +FD M K
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVA----LARTVFDGMAGDK---- 240
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
++ +W+ M++ YS+ EAL F + + G D+VT
Sbjct: 241 ---------------------NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVT 279
Query: 235 MATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR 272
M +V+SACA GALDLG+ + Y C + R+ VF +
Sbjct: 280 MVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMV 339
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
EK+ W+++ AIHG +ALG+F RM VRPN
Sbjct: 340 EKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPN 377
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID YA+ A +F+ M D ++W+ MI ++ + +AL F++ +
Sbjct: 317 ALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRP 376
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+ VT VLSACAH G ++ GR
Sbjct: 377 NNVTFIGVLSACAHSGLVEDGR 398
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 32/209 (15%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL----- 184
GF FV+ +++ Y +R+V FDEM + +W +++ AY+R+
Sbjct: 187 GGFDKHRFVENSLISAYVACGDVGAARKV----FDEMLVKDVISWTSIVVAYSRIRDMGS 242
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
AE +F P D+ +WT M+T Y+QN +AL+AF + +G D+V++ +SACA
Sbjct: 243 AEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQ 302
Query: 245 LGAL-------------DLGRGIQI---------YCRSLGRSLLVFFKLREKNLLCWNSI 282
LGA+ LGR + + C + + VF + +KN+ ++S+
Sbjct: 303 LGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSM 362
Query: 283 TEALAIHGFAHEALGMFDRMTYE-NVRPN 310
LA HG A++ + +F+ M +V PN
Sbjct: 363 IVGLASHGRANDVIALFNDMVRRADVEPN 391
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
++ LFD MP R TW MID Y +L A+ LF++MP D+ ++ +M++ + QN+
Sbjct: 243 AKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYH 302
Query: 214 REALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EAL+ FN K+S D+ T+ VLSA A LG L + +Y
Sbjct: 303 IEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVA 362
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++ VF + K++ WN++ LA+HG A M ++ +++P+
Sbjct: 363 LIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPD 422
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 58/192 (30%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG + K+ S +F+Q ++ Y +R+V FD MP+R ++N+MID Y
Sbjct: 115 VHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQV----FDRMPQRDSVSYNSMIDGYV 170
Query: 183 RL-----AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ +W +MI Y+Q +D V +
Sbjct: 171 KCGLVESAGELFDLMPREKRNLITWNSMIGGYAQR-------------------ADGVNV 211
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
A+ L F ++ EK+L+ WNS+ HG +A
Sbjct: 212 ASKL----------------------------FDEMPEKDLISWNSMIGGYVKHGRIEDA 243
Query: 296 LGMFDRMTYENV 307
G+FD M +V
Sbjct: 244 KGLFDVMPRRDV 255
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 29/217 (13%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T H ++ + G+ + + +++ Y N+ + +V R++F A N +ID+
Sbjct: 31 TETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAYQVIRQVFSWTV--SLAGLNLVIDS 88
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ R+ E +F KMP D+ +W +MI Y +N +F EAL +F S D+ T
Sbjct: 89 FMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTF 148
Query: 236 ATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLRE 273
A+V++ACA LGAL+ + I +Y C + + VF +
Sbjct: 149 ASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVER 208
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ WNS+ LA+HG A +A+ +F +M ENV P+
Sbjct: 209 NDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPD 245
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E F + +ID Y++ + +F + D+ W ++I + + +A+ F+K
Sbjct: 177 EVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSK 236
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ D +T +L AC+H G + GR
Sbjct: 237 MEAENVLPDSLTFLGILKACSHCGLVKEGR 266
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 59/256 (23%)
Query: 84 PQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLL---TTVHGQVWKNGFSSPVFVQT 140
P ++FV F ++ F L + LL +VH Q+ + G + FVQT
Sbjct: 44 PTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQT 103
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSW 200
+++ YS S ++R LF MPER +W+ MI+ Y R
Sbjct: 104 SLISMYSSSGLV----DMARNLFAVMPERNVISWSCMINGYVRCG--------------- 144
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGALDLGRGIQIY 257
Q++EAL F + + G ++ TM+ VL+AC LGAL+ G+ Y
Sbjct: 145 -----------QYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAY 193
Query: 258 ----------------------CRSLGRSLLVFFKLR-EKNLLCWNSITEALAIHGFAHE 294
C S+ ++ VF L K+++ W+++ LA+HG A E
Sbjct: 194 IDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEE 253
Query: 295 ALGMFDRMTYENVRPN 310
+G+F +M + VRPN
Sbjct: 254 CVGLFSKMINQGVRPN 269
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 175 NTMIDAYARLAEL------LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
+ID YA+ + N P D+ +W+ MI+ + + E + F+K G
Sbjct: 207 TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV 266
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
+ VT V AC H G + G+
Sbjct: 267 RPNAVTFLAVFCACVHGGLVSEGK 290
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 142/345 (41%), Gaps = 90/345 (26%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFL--AKQFISFCTSRFHFI 76
P +SF+ + L+ C SIK L+ ++A+I+KT + D L + + + C I
Sbjct: 20 PHKLSFL------STLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLP-I 72
Query: 77 D--YTILVFPQMQEPNVFVYHAF-----SSLRHPLQAIAFYLYMLRAEVLLTT------- 122
D Y + + Q++ PN+ +Y+A +S ++ + Y ML ++
Sbjct: 73 DPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVL 132
Query: 123 --------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
VHGQ K G +S V+V ++ Y+ + R +R++FD P+
Sbjct: 133 KACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVI----RSARKVFDTSPQ 188
Query: 169 RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
R D+ SWTTMI Y + RE + F +
Sbjct: 189 R--------------------------DLVSWTTMIQGYVKMGFAREGVGLFFEMCGENL 222
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSL 265
+D +T+ VLS+CA LG L LGR + Y C +
Sbjct: 223 QADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFAR 282
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ KN++ WNS+ LA G E+L MF +M V+P+
Sbjct: 283 KVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPD 327
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y A A +F +MP ++ SW +MI+ +Q QF+E+L F K ++ G
Sbjct: 266 NALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVK 325
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D VT+ VL++CA+LG L+LG+ + Y C S+ ++ V
Sbjct: 326 PDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWV 385
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + K++ + ++ LA+HG +AL +F M + P+
Sbjct: 386 FQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPD 428
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ + +F M D+ S+T MI + + Q +ALD F++ K G
Sbjct: 367 NALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIE 426
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+VT VL+AC+H+G ++ GR
Sbjct: 427 PDEVTFVGVLTACSHVGLVEEGR 449
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 30/156 (19%)
Query: 180 AYARLAELLFNKMPAWD--IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
A + LA+L +P ++ IR T N E L + + G D T+
Sbjct: 77 ALSLLAQLRTPNLPLYNAIIRGLAT------SNNDSIEGLVVYKQMLSKGIVPDNYTIPF 130
Query: 238 VLSACA-----------HLGALDLGRGIQIY-----------CRSLGRSLLVFFKLREKN 275
VL ACA H A+ +G +Y C + + VF +++
Sbjct: 131 VLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD 190
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L+ W ++ + GFA E +G+F M EN++ +G
Sbjct: 191 LVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADG 226
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 138/332 (41%), Gaps = 79/332 (23%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFI---SFCTSRFHFIDYTILV-- 82
H + + LK CSS L ++A I+ + D F + + + SR ++L
Sbjct: 31 HQLLSLLKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHC 90
Query: 83 -FPQMQEPNVFVYHAFSSLRHPLQAIAFY---------------LYMLRAEVLLTTV--- 123
F P F+ +SS P +AI+ + ++L+A L T+
Sbjct: 91 HFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEG 150
Query: 124 ---HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
H K G V+V+ +++ Y + +R+V FDEM ER +WN +
Sbjct: 151 KQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKV----FDEMTERTLVSWNAV--- 203
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
IT+ +N F EA+D F K G D+ TM +LS
Sbjct: 204 -----------------------ITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILS 240
Query: 241 ACAHLGALDLGRGIQ--------------------IYCRS--LGRSLLVFFKLREKNLLC 278
ACA LG L LGR + +Y +S +G + VF L++K++
Sbjct: 241 ACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWT 300
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W+++ LA HGFA+EA+ +F MT + PN
Sbjct: 301 WSAMILGLAQHGFANEAIELFTNMTSSPIVPN 332
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 178 IDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+D YA+ ++ +FN + + +W+ MI +Q+ EA++ F S +
Sbjct: 274 VDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMTSSPIVPNH 333
Query: 233 VTMATVLSACAHLGALD 249
VT VL AC+H G +D
Sbjct: 334 VTFIGVLCACSHAGLVD 350
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 145/352 (41%), Gaps = 77/352 (21%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+ + L ++A I+ + + + I+ CT YT L+F PNVFV+
Sbjct: 10 RVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFT 69
Query: 96 A----FSSLRHPLQAIAFYLYM----LRAEVLLTTV------------HGQVWKNGFSSP 135
+ +S L+ + + Y M +R + + + H V K G S
Sbjct: 70 SMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGHGSD 129
Query: 136 VFVQTAMVDNYS------YSNKFF-----------------------ESRRVSRRLFDEM 166
FV+ A++D Y+ ++ K F ES ++ LFD M
Sbjct: 130 AFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVM 189
Query: 167 PERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
PER TW M+ YA++ +L F+ MP + SW M++ Y+QN EAL F+
Sbjct: 190 PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFD 249
Query: 222 KTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQIYC-------------R 259
+ +G D+ T TV+SAC+ G L + IQ+ C
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFG 309
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
L + +F + +N++ WNS+ A +G + A+ +F M T + + P+
Sbjct: 310 DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 361
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 30/164 (18%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSGT 228
++D YA+ +L LFN MP ++ +W +MI Y+QN Q A++ F + T K T
Sbjct: 300 ALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 359
Query: 229 GSDQVTMATVLSACAHLGALDLGRGI-------QIY---------------CRSLGRSLL 266
D+VTM +V+SAC HLGAL+LG + QI C S+ +
Sbjct: 360 -PDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ ++++ +N++ A HG EA+ + M + P+
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPD 462
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 20/230 (8%)
Query: 34 LKKCSSIKELECVYATIVKT----NANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
+ CSS + C+ A++V+T L+CF+ + ++F +D +F M
Sbjct: 267 ISACSSRGD-PCLAASLVRTLHQKRIQLNCFVRTALLDM-YAKFGDLDSARKLFNTMPGR 324
Query: 90 NVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149
NV +++ IA Y ++ + + + + +++ +
Sbjct: 325 NVVTWNSM---------IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL 375
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
V R L + + + N MI Y+R + +F +M D+ S+ T+I
Sbjct: 376 GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLI 435
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
+ ++ + EA++ + K+ G D+VT VL+AC+H G L+ GR +
Sbjct: 436 SGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKV 485
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 65/246 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA-- 180
+H +V K G +V+ A+V Y + ++R+ FDEMP++ +WN ++ A
Sbjct: 134 LHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKA----FDEMPDKNAVSWNALVGAHR 189
Query: 181 ----------------------------------YARLAELLFNKMPAWDIRSWTTMITS 206
Y A +F++MP D SW ++I+
Sbjct: 190 AAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISG 249
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------- 255
Y++ ++ +AL F + +++G ++T+ VL ACA +G LDLG I
Sbjct: 250 YTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVAD 309
Query: 256 -----------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C L + VF ++ +++ CWN++ ++HG + EAL +FD M
Sbjct: 310 GLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMKI 369
Query: 305 ENVRPN 310
E PN
Sbjct: 370 E---PN 372
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 65/246 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA-- 180
+H +V K G +V+ A+V Y + ++R+ FDEMP++ +WN ++ A
Sbjct: 120 LHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKA----FDEMPDKNAVSWNALVGAHR 175
Query: 181 ----------------------------------YARLAELLFNKMPAWDIRSWTTMITS 206
Y A +F++MP D SW ++I+
Sbjct: 176 AAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISG 235
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------- 255
Y++ ++ +AL F + +++G ++T+ VL ACA +G LDLG I
Sbjct: 236 YTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVAD 295
Query: 256 -----------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C L + VF ++ +++ CWN++ ++HG + EAL +FD M
Sbjct: 296 GLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMKI 355
Query: 305 ENVRPN 310
E PN
Sbjct: 356 E---PN 358
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V NGF ++ +++V Y+ E+RRV
Sbjct: 219 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRV------------------------- 253
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
FN+MP ++ WT+MI +Q+ +F+EA+D F + +G +D T+ATV+S+C
Sbjct: 254 -----FNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCG 308
Query: 244 HLGALDLGRGIQIYC--RSLGRSLLV--------------------FFKLREKNLLCWNS 281
+GALDLGR + YC LG+ L V F L ++++ W
Sbjct: 309 QMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTV 368
Query: 282 ITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
+ A++G EAL +F +M E+ V PN
Sbjct: 369 MIMGFAMNGLCVEALDLFAQMEGEDKVMPN 398
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 31/166 (18%)
Query: 175 NTMIDAYARL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
N +I+ Y+ A L+ + P W D+ SW T+I Y + +AL +F++ K
Sbjct: 132 NALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQ 191
Query: 228 TGSDQVTMATVLSACAHLGALDLG---------RGIQIYCRSLGRSLL------------ 266
D+VT+ VL ACA GA+ +G G +I C +G SL+
Sbjct: 192 VRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCY-IGSSLVSMYAKCGMVEEA 250
Query: 267 --VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ E+N++CW S+ G EA+ +F M V+ +
Sbjct: 251 RRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKAD 296
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 135/330 (40%), Gaps = 62/330 (18%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHF 75
P V+FI N L CSS + LE ++A IV L+ LA IS ++
Sbjct: 77 PNCVTFI------NTLGACSSAEFLETGKKIHAQIVAGEVELELNLANSLISMYSNCGSL 130
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131
+D F M NV ++ AFS H +A+ + M K G
Sbjct: 131 VDAKRF-FDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFYEME--------------KQG 175
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AE 186
F ++ S + RR+ R D + + NT+++ YAR A
Sbjct: 176 FKPDRVSFVSVFSACSILEDLSQGRRIHARFCDGRMKLDVSIGNTLLNMYARCGSLDDAR 235
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
L+F+ + + +I SWT+MI +Y+Q +F +A + F +K G ++VT T+L ACA
Sbjct: 236 LVFDSITSRNIVSWTSMIAAYAQFDRFHDAYEVF---QKMGVAPNEVTFITILGACAEAR 292
Query: 247 ALDLGRGIQ------------------------IYCRSLGRSLLVFFKL--REKNLLCWN 280
AL R I C SL + VF + E+N++ W
Sbjct: 293 ALKQAREIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVVTWT 352
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
SI A + G EAL +F RM E + N
Sbjct: 353 SIIAACGLCGHPREALALFHRMELEGIPAN 382
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 53/314 (16%)
Query: 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV 91
N KC S+ + + V+ ++ N+ + + I+ C H + + +F +M+ +
Sbjct: 323 NTYAKCGSLSDAKTVFESMATAERNVVTWTS--IIAACGLCGHPRE-ALALFHRMELEGI 379
Query: 92 FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT-----VHGQVWKNGFSSPVFVQTAMVDNY 146
P I F + L +T +HG + G+ V +++ +
Sbjct: 380 -----------PANEITFGTVLSACADLGSTREARYLHGLIVSGGYDRDTVVCNGLINMF 428
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW---DIR 198
++R + F+ M R TW M+ AY + E+ LF +M D+
Sbjct: 429 GKCGMLEDARAI----FERMRSRNLVTWTGMLGAYIQQQEIRQAVSLFQQMERISYKDVM 484
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY- 257
+WTTM+ +Y+Q EAL + + G D++T +L AC+ +GA G I+ +
Sbjct: 485 AWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITFVNLLHACSRMGAKKEGWTIRSHI 544
Query: 258 -------CRSLGRSL--------------LVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
R LG L +VF L E++ WN+ HGF E+L
Sbjct: 545 LERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENLAERDSAAWNAAIGVSGQHGFYDESL 604
Query: 297 GMFDRMTYENVRPN 310
+F+RM E + P+
Sbjct: 605 RLFERMVLEGMEPD 618
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 156 RRVSRRLFDEMPERKFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQN 210
RR+ L + + NT++ Y + L F+ + ++ SW+ +I YS++
Sbjct: 1 RRIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSRH 60
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIY----------- 257
+ REA++ F+ + VT L AC+ L+ G+ I QI
Sbjct: 61 RLSREAIELFHAMDVR---PNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLA 117
Query: 258 ---------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
C SL + F + +N++ WN I A + HG EA+ +F M + +
Sbjct: 118 NSLISMYSNCGSLVDAKRFFDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFYEMEKQGFK 177
Query: 309 PN 310
P+
Sbjct: 178 PD 179
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 56/212 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H QV GF + + V TA+V Y+ ++R+V FD MP R +W+ MI AY
Sbjct: 382 IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQV----FDAMPRRDVVSWSAMIGAYV 437
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+N EA + F+ K+S D VT +L+AC
Sbjct: 438 --------------------------ENGYGTEAFETFHLMKRSNIEPDGVTYINLLNAC 471
Query: 243 AHLGALDLGRGIQIYCRS----------LGRSLL--------------VFFKLREKNLLC 278
HLGALD+ G++IY ++ LG +L+ +F + ++++
Sbjct: 472 GHLGALDV--GMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVIT 529
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ ++HG A EAL +FDRM E RPN
Sbjct: 530 WNAMIGGYSLHGNAREALYLFDRMLKERFRPN 561
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 52/212 (24%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH Q G + V T+++ Y+ +RRV
Sbjct: 280 AVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV----------------------- 316
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
F+ M D+ SWT MI Y++N +A F ++ G D++T +++A
Sbjct: 317 -------FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369
Query: 242 CAHLGALDLGRGI--QIYCRSLGRSLLV--------------------FFKLREKNLLCW 279
CA L+ R I Q+ G LLV F + ++++ W
Sbjct: 370 CAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSW 429
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+++ A +G+ EA F M N+ P+G
Sbjct: 430 SAMIGAYVENGYGTEAFETFHLMKRSNIEPDG 461
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH QV GF S + TA+V Y ++R+V FD + R +T+N M+ YA
Sbjct: 180 VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV----FDGLHIRDVSTFNVMVGGYA 235
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ + W+ +A + F + ++ G ++++ ++L C
Sbjct: 236 KSGD--------WE------------------KAFELFYRMQQVGLKPNKISFLSILDGC 269
Query: 243 AHLGALDLGRGIQIYCRSLG--------RSLL--------------VFFKLREKNLLCWN 280
AL G+ + C + G SL+ VF ++ ++++ W
Sbjct: 270 WTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWT 329
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ E A +G +A G+F M E ++P+
Sbjct: 330 VMIEGYAENGNIEDAFGLFATMQEEGIQPD 359
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F+ M D+ +W MI YS + REAL F++ K + VT VLSAC+
Sbjct: 515 ARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSR 574
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKL 271
G +D GR Y GR ++ KL
Sbjct: 575 AGFVDEGRRFFTYLLE-GRGIVPTVKL 600
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NT+I Y+ A +F+ + + +W +I Y+Q +EA F + G
Sbjct: 96 NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCR--SLGRSLLV 267
+T +VL AC+ L+ G+ + +Y + S+ + V
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F L +++ +N + A G +A +F RM ++PN
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPN 258
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 27/162 (16%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++D YA+ ++ LF++M D+ +W+ MI+ YSQ + REALD F++ +K+
Sbjct: 265 SLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDP 324
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
+++TM ++LS+CA LGAL+ G+ + + C S+ S+ VF
Sbjct: 325 NEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVF 384
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ KN+L W + + LA +G +AL F M +NV PN
Sbjct: 385 GKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPN 426
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 132/325 (40%), Gaps = 78/325 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQEPNVF 92
L++C +I++L ++A ++KT L +A+ + +DY + +F Q+ EP+
Sbjct: 31 LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSP 90
Query: 93 VYH----AFSSLRHPLQAIAFYLYM---------------------LRAEVLLTTVHGQV 127
Y+ F+ + P +AI + M L+A +H +
Sbjct: 91 AYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALI 150
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K GF S FV+ ++ Y+ + V+RR+FDEM ER TWN
Sbjct: 151 MKCGFGSHGFVKNTLIHMYANCGEV----EVARRVFDEMSERNVRTWN------------ 194
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+M Y+++ + E + F++ + D+VT+ +VL+AC L
Sbjct: 195 --------------SMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLAD 240
Query: 248 LDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEA 285
L+LG I Y C + + +F ++ ++++ W+++
Sbjct: 241 LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISG 300
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
+ EAL +F M N+ PN
Sbjct: 301 YSQASRCREALDLFHEMQKANIDPN 325
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ + +F KMP ++ SWT +I + N Q ++AL+ F + +
Sbjct: 367 LMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPN 426
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
VT VLSAC+H G +D GR + + S+ R + E + + + + L G
Sbjct: 427 DVTFIGVLSACSHAGLVDEGRDLFV---SMSRDFGI-----EPRIEHYGCMVDILGRAGL 478
Query: 292 AHEALGMFDRMTYENVRPNG 311
EA M ++PN
Sbjct: 479 IEEAFQFIKNMP---IQPNA 495
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y + A+ +FN++ D+ SWT+M++ +++ F+EAL F K + +
Sbjct: 252 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIE 311
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D++T+ VLSACA GALD G+ I + C S+ +L V
Sbjct: 312 LDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 371
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F ++R +N+ WN++ LA+HG +A+ +FD+M ++ + P+
Sbjct: 372 FRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPD 414
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 145/336 (43%), Gaps = 85/336 (25%)
Query: 21 SVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYT 79
SV F++ H C+SI + + +A +++T+ + + + ISF S ++Y
Sbjct: 13 SVDFLKTH--------CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYA 64
Query: 80 ILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEV----------------- 118
+F QMQ P+ F+ + ++ ++P +A++ Y +M+ V
Sbjct: 65 RKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARL 124
Query: 119 ----LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
L H +V KNGF S +FV A++ Y F + +FDE R TW
Sbjct: 125 GAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSF----GCACDVFDESTVRDVVTW 180
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
N MI+ A L + L K A+D+ LD TK D+VT
Sbjct: 181 NIMIN--AHLNKGLSEK--AFDL-------------------LDEM--TKLDNLRPDEVT 215
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLG--------RSLL--------------VFFKLR 272
M +++ ACA LG L+ G+ + Y + LG ++L VF ++R
Sbjct: 216 MVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIR 275
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
EK++L W S+ LA G+ EAL +F +M +
Sbjct: 276 EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIE 311
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF +M D TMI Y++++ EA+ + + G D T VL+ACA
Sbjct: 64 ARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACAR 123
Query: 245 LGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSI 282
LGA+ LGR IQ Y C S G + VF + ++++ WN +
Sbjct: 124 LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIM 183
Query: 283 TEALAIHGFAHEALGMFDRMT-YENVRPN 310
A G + +A + D MT +N+RP+
Sbjct: 184 INAHLNKGLSEKAFDLLDEMTKLDNLRPD 212
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D YA+ LA +F +M ++ +W +I + + +A+ F++ +
Sbjct: 354 ALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMP 413
Query: 231 DQVTMATVLSACAHLGALDLG 251
D VT +L AC+H G +D G
Sbjct: 414 DDVTFIALLCACSHAGLVDEG 434
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T +H ++K GF V+VQT ++ YS S E+ +V F EM R +WN I
Sbjct: 157 TQLHALIFKVGFQFQVYVQTRLLQMYSSSGLLVEAAQV----FYEMQHRNLVSWNVFITG 212
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVT 234
+L E+ +FN+MPA + SWT +I Y++ Q +AL F K + G +VT
Sbjct: 213 LIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVT 272
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKL- 271
+ T+ A A++G + + + + Y G S+ FF+
Sbjct: 273 LLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEI 332
Query: 272 --REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W S A++G EAL F+ M +RPN
Sbjct: 333 PDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPN 373
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 29/131 (22%)
Query: 122 TVHGQVWKNGFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+VHG V K GF++ V + A++D Y+ VSR F E+P+++
Sbjct: 291 SVHGYVEKRGFNAFDVRITNALLDLYAKCGCI---ASVSR-FFQEIPDQR---------- 336
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ SWT+ I+ ++ N REAL++F +K+G + VT VLS
Sbjct: 337 --------------RNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLS 382
Query: 241 ACAHLGALDLG 251
AC+H G ++ G
Sbjct: 383 ACSHGGLVEEG 393
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 120/271 (44%), Gaps = 72/271 (26%)
Query: 82 VFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVL------------------ 119
VF +M + NV + A+S+ + +A+ F + MLR V
Sbjct: 22 VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFN 81
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +H + K G S VFV++A++D YS + + RV
Sbjct: 82 LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV--------------------- 120
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
F++M D+ W+++I ++QN EAL F + K++G + Q T+ +VL
Sbjct: 121 ---------FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVL 171
Query: 240 SACAHLGALDLGRGIQIY--------------------CRSLGRSLLVFFKLREKNLLCW 279
AC L L+LGR + ++ C SL + VF ++ EK+++ W
Sbjct: 172 RACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISW 231
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ LA +G++ EAL +F+ M ++PN
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVLGIKPN 262
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y + A+ +F+KMP ++ SWTTMI++YS K +AL+ + G
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 230 SDQVTMATVLSACA--------HLGALDLGRGIQIYCRS-----------LGRSLLVFFK 270
+ T ++VL AC H + +G ++ RS L +L VF +
Sbjct: 64 PNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDE 123
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
+ +L+ W+SI A + EAL +F RM
Sbjct: 124 MVTGDLVVWSSIIAGFAQNSDGDEALRLFKRM 155
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 26/227 (11%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ C + L ++ I+K + D F+ I SR+ ++ + VF +M ++ V
Sbjct: 73 LRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDV-YSRWGELENALRVFDEMVTGDLVV 131
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149
+ F+ +A+ + M RA GF + T+++ +
Sbjct: 132 WSSIIAGFAQNSDGDEALRLFKRMKRA--------------GFLAQQTTLTSVLRACTGL 177
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
R+V + ++ N ++D Y + L +F +M D+ SW+TMI
Sbjct: 178 ALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMI 235
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+QN +EAL F K G + VT+ VL AC+H G ++ G
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG 282
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L TVH + ++G V ++ A+VD + ++ V FD MP + +W +M+
Sbjct: 251 LGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEV----FDGMPIKDVYSWTSMV 306
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
AYA+ +L LF ++P ++ SW+ M+ +YS EA+ FN +G
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 234 TMATVLSACAHLGALDLGRG---------------------IQIY--CRSLGRSLLVFFK 270
T+ +VLSACA L +LD+G I ++ C +G + +F
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +KN++ WN++ A +HG EAL +F + P+
Sbjct: 427 MEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPD 466
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 124/336 (36%), Gaps = 77/336 (22%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDY 78
T+ + + H + + L+ C+S + L + A + + + F A + ++FC S + +
Sbjct: 24 TNCNLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAH 83
Query: 79 TILVFPQMQE-PNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTT----------- 122
V Q E PN ++ F P A+ + +LR + +
Sbjct: 84 AAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAA 143
Query: 123 --------VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+H +K GF V A+V Y+ S ++R+ LFDEM +R +
Sbjct: 144 TSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARK----LFDEMADRDVVS 199
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
W T+ID YAR +P R + M+ + S ++V
Sbjct: 200 WTTLIDGYAR------GGLPDEAWRVFCRMVVAES-------------------VWPNEV 234
Query: 234 TMATVLSACAHLGALDLGRGI-QIYCRSLGRSLL---------------------VFFKL 271
T+ SA +G L LGR + Q S GR + VF +
Sbjct: 235 TLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGM 294
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K++ W S+ A A G A +F + NV
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV 330
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ID +A+ ++ LF+ M ++ SW TMI ++ + Q EAL F + K +G
Sbjct: 405 NAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGIL 464
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D+ T VLSAC+H G + GR
Sbjct: 465 PDEATYIGVLSACSHGGLVSEGR 487
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 117/279 (41%), Gaps = 90/279 (32%)
Query: 122 TVHGQVWKNGFS---SPVFVQTAMVDNY------SYSNKFFES---RRV----------- 158
++HGQV K GFS ++V+TA+VD Y + K F+ R V
Sbjct: 5 SIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYL 64
Query: 159 -------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
+ LF +MPER FA+WN MI + ++ F+ MP + SW TMI+
Sbjct: 65 KAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISG 124
Query: 207 YS-------------------------------QNKQFREALDAFNKTKKS--GTGSDQV 233
YS QN + EAL+ FN D++
Sbjct: 125 YSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEM 184
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKL 271
T+A+V+SAC+ LG L G I+ Y R LG ++ +F L
Sbjct: 185 TLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGL 244
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R+K+L+ + ++ I+G A +A+ +FD M + PN
Sbjct: 245 RKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPN 283
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 33/203 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V + AM+D + S +RR LFDEM + TW TMI Y ++ LF+
Sbjct: 176 VVIYNAMMDGFVKSGDMTSARR----LFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFD 231
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD 249
MP ++ SW TMI Y QNKQ +EA+ F + + + + D VT+ +VL A + GAL
Sbjct: 232 AMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALS 291
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG + C + ++ +F ++ EK + WN++ A
Sbjct: 292 LGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYA 351
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
++G AH AL +F M E +P+
Sbjct: 352 LNGNAHAALDLFLTMAKEE-KPD 373
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 31/129 (24%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V + V V TA++D YS + +++R+ FDEMPE++ A+WN MI YA
Sbjct: 297 HCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRI----FDEMPEKQVASWNAMIHGYAL 352
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N ALD F K D++TM V+SAC
Sbjct: 353 --------------------------NGNAHAALDLFLTMAKE-EKPDEITMLAVISACN 385
Query: 244 HLGALDLGR 252
H G ++ GR
Sbjct: 386 HGGLVEEGR 394
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q+ G FV+T++++ YS + R+ FDE + WN++++AYA+
Sbjct: 84 HAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRI----FDESVSKDLPAWNSVVNAYAK 139
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN-----KTKKSGTGSDQV 233
A LF++MP ++ SW+ +I Y +++EALD F K + ++
Sbjct: 140 AGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKF 199
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM+TVLSAC LGAL+ G+ + Y C SL R+ VF L
Sbjct: 200 TMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDAL 259
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTYE-NVRPN 310
+K++ ++++ LA++G E +F MT N+ PN
Sbjct: 260 GSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPN 300
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 95 HAFSSLRHPLQAIAFYLY--MLRAEV------LLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
H FS+LR F+ + +L+A L ++H Q K G +F ++ Y
Sbjct: 95 HLFSTLRRLSLPPDFHTFPFVLKASAQLHSLSLAQSLHSQALKFGLLPDLFSLNTLIGVY 154
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
S ++ ++ + LF E P ++N +I + ++ LF++MP D SW
Sbjct: 155 SIHHRVNDAHK----LFYECPHGDVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWG 210
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---- 257
TMI YS K +A++ FN+ + D + + +VLSACA LG L+ G + Y
Sbjct: 211 TMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLSACAQLGELEQGSIVHDYIKRN 270
Query: 258 ------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
C + + VF EK + WN++ AIHG L F
Sbjct: 271 RIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYF 330
Query: 300 DRMTYENVRPNG 311
RM E V+P+G
Sbjct: 331 SRMVSEGVKPDG 342
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 80/370 (21%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQ-----LKKCSS----IKELECVYATIVKTNANLDCF 60
++S K F S IR + ++ L K SS +K++ C IV +L +
Sbjct: 109 VSSSKNECFGLYSSMIRYRVSPDRQTFLHLMKASSFLSEVKQIHC--HIIVSGCLSLGNY 166
Query: 61 LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA 116
L + F + + VF M +P+V ++ ++ L+A+ Y M+
Sbjct: 167 LWNSLVKFYM-ELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSD 225
Query: 117 EV---------------------LLTTVHGQVWKNG--FSSPVFVQTAMVDNYSYSNKFF 153
+ L VHG + + G +SS + ++ A++D Y F
Sbjct: 226 GIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMY------F 279
Query: 154 ESRR--VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
+ + +++R FD + ++ +WNTM+ + RL ++ +F++MP D+ SW +++
Sbjct: 280 KCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFC 339
Query: 207 YSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------- 253
YS+ + RE +K D+VTM +++S A+ G L GR
Sbjct: 340 YSKKGCDQRAVRELFYEMLIVEK--VKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQ 397
Query: 254 -----------IQIYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
I +YC+ + R+ +VF EK++ W S+ A HG+ +AL +F
Sbjct: 398 LEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFK 457
Query: 301 RMTYENVRPN 310
RM E+V PN
Sbjct: 458 RMQEEDVTPN 467
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + A ++F D+ WT+MIT ++ + ++AL F + ++
Sbjct: 406 SALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVT 465
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK 274
++VT+ VL+AC+H G ++ G L VF+ ++EK
Sbjct: 466 PNKVTLLAVLTACSHSGLVEEG-------------LHVFYHMKEK 497
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GFS PV A++D Y+ N + E + ++F++MPER +W ++ Y +L
Sbjct: 178 GFSLPV--ANALLDMYT-KNGYLEE---AVKMFEQMPERNIISWTILVSGYGIAGQLDKA 231
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
F + D+ WT+MI + Q+ F EAL F + D+ T+ T+L+ CA++
Sbjct: 232 RVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANI 291
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GALD G I Y C + +SL +F +++ K+ W +I
Sbjct: 292 GALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAII 351
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPNG 311
LA +G A +AL +F+ M +P+G
Sbjct: 352 CGLATNGQASKALELFEEMQRSKTKPDG 379
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 42/186 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH K GF + ++++ Y+ + +RRV FDEMP+R WN M+ Y
Sbjct: 68 VHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRV----FDEMPQRFLVLWNMMMRCYI 123
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R +F A+ + + G D+VT+ T ++AC
Sbjct: 124 RCG--------------------------RFTAAVALAVQMESGGATPDRVTLVTAVTAC 157
Query: 243 AHLGALDLGRGIQIYCRSL-GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
+ G L+LGR I Y + G SL V N++ + +G+ EA+ MF++
Sbjct: 158 SRAGDLNLGRRIHSYMDGVFGFSLPVA-----------NALLDMYTKNGYLEEAVKMFEQ 206
Query: 302 MTYENV 307
M N+
Sbjct: 207 MPERNI 212
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I+ Y++ + +F +M D +WT +I + N Q +AL+ F + ++S T D
Sbjct: 319 LIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPD 378
Query: 232 QVTMATVLSACAHLGALDLGR 252
+T VLSAC H G +D G+
Sbjct: 379 GITFIGVLSACCHGGLVDEGQ 399
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 133/306 (43%), Gaps = 39/306 (12%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
LK+C S++E + V+A I+K D F ++ C SR+ ++Y +F Q++EP F
Sbjct: 38 LKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSF 97
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
Y+ +R + ++ E LL V ++ + G F ++ S
Sbjct: 98 EYNTM--IRGNVNSMDL------EEALLLYV--EMLERGIEPDNFTYPFVLKACSLLVAL 147
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207
E ++ +F+ E N +I Y + A ++F +M + SW+++I ++
Sbjct: 148 KEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAH 207
Query: 208 SQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQ----------- 255
+ + + E L + G +++ + + LSAC HLG+ +LGR I
Sbjct: 208 ASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELN 267
Query: 256 -----------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
+ C SL + L VF + KN + + LAIHG EAL +F M
Sbjct: 268 VVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLE 327
Query: 305 ENVRPN 310
E + P+
Sbjct: 328 EGLTPD 333
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 18/226 (7%)
Query: 34 LKKCS---SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS ++KE ++A + +D F+ IS + I++ +VF QM E +
Sbjct: 138 LKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISM-YGKCGAIEHAGVVFEQMDEKS 196
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V ++SS+ ++ + L +LL + + S + + + N
Sbjct: 197 VA---SWSSIIGAHASVEMWHECL---MLLGDMSREGRHRAEESILVSALSACTHLGSPN 250
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
R + L + E ++ID Y + L +F M + S+T MI
Sbjct: 251 L---GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIA 307
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+ + + REAL F+ + G D V VLSAC+H G + G
Sbjct: 308 GLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEG 353
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 40/226 (17%)
Query: 119 LLTTVHGQVWKNG----FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
L + +H Q K+G SS V V A++ YS ++RRV FDEMP R ++
Sbjct: 140 LPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGDARRV----FDEMPARDVISF 195
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++ + + A ++F++MP D+ SWT MI++Y++ ++ REAL F+
Sbjct: 196 SGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRPREALALFDAMP---VQ 252
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D+VTM +V+SAC LG L G + Y C SL + +
Sbjct: 253 PDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLTEARNL 312
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE--NVRPNG 311
F + ++L WN+ A A HG + +F RM + +V+P+G
Sbjct: 313 FDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKSVKPDG 358
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ L LF+ M + SW T I++Y+ + + F++ G
Sbjct: 294 NALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKS 353
Query: 230 --SDQVTMATVLSACAHLGALDLGRGI 254
D T+ VL+A AH G ++ GR +
Sbjct: 354 VKPDGTTLLAVLTAYAHKGFVEEGRAM 380
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 127/303 (41%), Gaps = 85/303 (28%)
Query: 61 LAKQFISFCT-SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQ--AIAFYLYM 113
++++ ++FC S + Y LVF ++ P ++ FS PLQ AI FY +M
Sbjct: 432 ISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHM 491
Query: 114 LRA----------------------EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNK 151
L A E VHG + + G+ V + T ++ +Y+ N
Sbjct: 492 LSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYA-GNG 550
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211
E+ + ++F+EMP R +WN +MI+ Y Q
Sbjct: 551 LIET---AHKVFEEMPARDLVSWN--------------------------SMISCYCQTG 581
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------- 257
EAL +++ + S G D T+ ++LS+CAH+GAL + G+Q++
Sbjct: 582 LHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHM--GVQMHRFAGERRLVENIFV 639
Query: 258 ----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C SL +L +F + ++++ WNS+ +HG EA+ F M V
Sbjct: 640 GNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGV 699
Query: 308 RPN 310
RPN
Sbjct: 700 RPN 702
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMI 204
++F RR+ +F N +ID YA+ L +FN MP D+ +W +MI
Sbjct: 625 HRFAGERRLVENIF---------VGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMI 675
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
Y + + EA+ F +G + +T +L C+H G + G
Sbjct: 676 VGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 722
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNK---QFREALDAFNKTKKSGTGSDQVTMATVLSA 241
A+L+F+++ +W +MI +SQ+ Q + + + S D T + +L A
Sbjct: 451 AQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKA 510
Query: 242 CAHLGALDLGRGIQIY--------------CRSLGRSLL----------VFFKLREKNLL 277
C A + G+ +++ C +L RS VF ++ ++L+
Sbjct: 511 CEE--AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLV 568
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
WNS+ G EAL M+D+M NV +G
Sbjct: 569 SWNSMISCYCQTGLHEEALKMYDQMRISNVGFDG 602
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
++ LFD MP R TW TMID YA+L A+ LF++M D+ + +M+ Y QNK
Sbjct: 251 AKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYH 310
Query: 214 REALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EAL+ FN +K S D+ T+ VLSA A LG L + +Y
Sbjct: 311 MEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVA 370
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++ VF + K++ WN++ LAIHG A M ++ +++P+
Sbjct: 371 LIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPD 430
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +R+V FD MP+R ++N+MID Y
Sbjct: 123 IHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQV----FDRMPQRDSVSYNSMIDGYV 178
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q + L+ +K D ++
Sbjct: 179 KCGLMKSAHKLFDLMPREIKNLISWNSMISGYAQTA---DGLNTASKLFSEMPEKDLISW 235
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
++++ C G ++ +G+ F + ++++ W ++ + A GF H A
Sbjct: 236 NSMINGCVKHGRIEDAKGL-------------FDVMPRRDVVTWATMIDGYAKLGFVHHA 282
Query: 296 LGMFDRMTYENV 307
+FD+M +V
Sbjct: 283 KSLFDQMHQRDV 294
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F+ D W +I SYS R AL F ++G D+ +++ VL AC+ L L
Sbjct: 58 FSAGEGEDPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFL 117
Query: 249 DLGR----------------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286
G G+ + C LG + VF ++ +++ + +NS+ +
Sbjct: 118 KEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGY 177
Query: 287 AIHGFAHEALGMFDRMTYE 305
G A +FD M E
Sbjct: 178 VKCGLMKSAHKLFDLMPRE 196
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V NGF ++ +++V Y+ E+RRV
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRV------------------------- 165
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
FN+MP ++ WT+MI +Q+ +F+EA+D F + +G +D T+ATV+S+C
Sbjct: 166 -----FNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCG 220
Query: 244 HLGALDLGRGIQIYC--RSLGRSLLV--------------------FFKLREKNLLCWNS 281
+GALDLGR + YC LG+ L V F L ++++ W
Sbjct: 221 QMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTV 280
Query: 282 ITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
+ A++G EAL +F +M E+ V PN
Sbjct: 281 MIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 31/166 (18%)
Query: 175 NTMIDAYARL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
N +I+ Y+ A L+ + P W D+ SW T+I Y + +AL +F++ K
Sbjct: 44 NALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQ 103
Query: 228 TGSDQVTMATVLSACAHLGALDLG---------RGIQIYCRSLGRSLL------------ 266
D+VT+ VL ACA GA+ +G G +I C +G SL+
Sbjct: 104 VRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCY-IGSSLVSMYAKCGMVEEA 162
Query: 267 --VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF ++ E+N++CW S+ G EA+ +F M V+ +
Sbjct: 163 RRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKAD 208
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + + G S V V TA+V+ Y+ E+R+V F+ M R W+T+I AYA
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKV----FNAMKNRDAVAWSTLIGAYA 385
Query: 183 --------RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQV 233
R A +F+++ + D W MIT+Y QN A+ F + T +G D V
Sbjct: 386 SNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAV 445
Query: 234 TMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKL 271
T VL ACA LG L + I +Y C SL + +F
Sbjct: 446 TFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAA 505
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+EK ++ W ++ A + +G EAL +F M E V+P+
Sbjct: 506 KEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPD 544
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 55/205 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ NGF S + V TA+++ Y E+R V FD+M +R +WN MI Y
Sbjct: 229 IHAEIVANGFDSDLVVATALINMYGKCGSSHEAREV----FDKMKKRDMVSWNVMIGCYV 284
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
QN F EAL+ + K G + T ++L AC
Sbjct: 285 --------------------------QNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
+ + AL GR + + C SL + VF ++ ++ + W+
Sbjct: 319 SSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWS 378
Query: 281 SITEALAIHGF---AHEALGMFDRM 302
++ A A +G+ A +A +FDR+
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRL 403
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 150 NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMI 204
+ E + + ++ + E NT+I+ YAR AE LF + SWT M+
Sbjct: 458 GRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMV 517
Query: 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
++SQ ++ EALD F + G D VT ++L C H G+L+ G
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQG 564
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 35/187 (18%)
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL-----FNKMPAW---DIRSWTTMIT 205
E R + R+ ER N +I Y + L+ F M W ++ SW MI
Sbjct: 25 EGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMD-WRQRNVVSWNAMIA 83
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ---------- 255
+Y+QN EAL + + G G+D VT +VL AC+ L GR I
Sbjct: 84 AYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDS 140
Query: 256 ----------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
+Y R S+G + +F L+ ++ WN++ A + G AL +F M
Sbjct: 141 FQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK 200
Query: 304 YENVRPN 310
+++PN
Sbjct: 201 C-DMKPN 206
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H +V+ +G S + A+V Y+ F S ++R+F + R +WN +I A++
Sbjct: 129 IHNRVFYSGLDSFQSLANALVTMYAR----FGSVGDAKRMFQSLQTRDETSWNAVILAHS 184
Query: 183 RLAEL-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ + +F +M D++ ++ +I+ +S + E + +G SD V
Sbjct: 185 QSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243
Query: 234 TMATVLSACAHLGALDLGRGIQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+AT L I +Y C S + VF K+++++++ WN + +G
Sbjct: 244 -VATAL--------------INMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD 288
Query: 292 AHEALGMFDRMTYENVR 308
HEAL ++ ++ E +
Sbjct: 289 FHEALELYQKLDMEGFK 305
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 54/229 (23%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRV---------------------------SRRLFDEMPE 168
VF TA+V Y+ + E++RV ++ LFD MP
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC 383
Query: 169 RKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R A+WNTM+ YA+ A +F MP D SW M+ +YSQ E L F +
Sbjct: 384 RNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGR-----------GIQIY-----------CRSL 261
+ G ++ A VLS CA + AL+ G G+ + C S+
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSM 503
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ F ++ E++++ WN++ A HGF EAL +FD M + +P+
Sbjct: 504 EEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD 552
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 27/173 (15%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
++R FD PE+ +WN M+ AY R A LF+ WD SW ++ Y Q Q
Sbjct: 218 LARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQ 277
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG----------------IQI 256
EA FNK + D V+ T++S A G + R +
Sbjct: 278 IEEAQKMFNKMPQ----RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSG 333
Query: 257 YCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
Y ++ L + VF + +KN + WN++ A EA +FD M NV
Sbjct: 334 YAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV 386
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A F +M D+ SW TMI Y+++ +EAL+ F+ +K+ T D +T+ VL+AC+H
Sbjct: 506 AHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSH 565
Query: 245 LGALDLG 251
G ++ G
Sbjct: 566 SGLVEKG 572
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 24/151 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYA---RLAELL--FNKMPAWDIRSWTTMITSYSQNKQF 213
+ RLF MP R +T+NTM+ YA RL + L F +P D S+ T++ + +
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSL 185
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272
+ F++ D V+ ++S+ A+ G + L R +F L
Sbjct: 186 ADVRALFDEMPV----KDSVSYNVMISSHANHGLVSLARH--------------YFDLAP 227
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
EK+ + WN + A +G EA +FD T
Sbjct: 228 EKDAVSWNGMLAAYVRNGRIQEARELFDSRT 258
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 30/214 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH G VFV TA+VD Y+ N ES + FDEMP + N +I Y+
Sbjct: 92 VHCHALVRGLLGDVFVLTALVDFYA-KNGDMES---AVSAFDEMPVKDPIPINCLITGYS 147
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ ++ LF+ M SW +MI Y+ +FREAL F++ G + +T+ +
Sbjct: 148 KAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITS 207
Query: 238 VLSACAHLGALDLGRGIQ---------------------IYCRSLGRSLLVFFKLREKNL 276
V S CA G LD G+ ++ + CR++ + F ++ ++++
Sbjct: 208 VFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDV 267
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+++ A +G E+L +F+RM + RPN
Sbjct: 268 VAWSTMIAGYAQNGRPLESLELFERMKATDCRPN 301
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 22/144 (15%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F++M D+ +W+TMI Y+QN + E+L+ F + K + ++VT+ V+SACA LG+
Sbjct: 259 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSD 318
Query: 249 DLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
+L I Y C +GR+ VF ++ +K ++ WNS+ L
Sbjct: 319 ELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGL 378
Query: 287 AIHGFAHEALGMFDRMTYENVRPN 310
A++GFA +A+ ++++M V+PN
Sbjct: 379 AMNGFAEDAISLYEKMAENGVQPN 402
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y R + +F++M + +W +MI + N +A+ + K ++G
Sbjct: 341 SALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQ 400
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+++T +L+AC H G +D G
Sbjct: 401 PNEITFVALLAACTHAGLVDQG 422
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 119/297 (40%), Gaps = 61/297 (20%)
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHAF-SSLRH--------------------------P 103
SR F VF +M PN+ Y+ SS H
Sbjct: 88 SRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEIT 147
Query: 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
L +IA L A L VHG G + V A+VD Y S +F
Sbjct: 148 LVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCG----DPDASYSIF 203
Query: 164 DEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
M ER TW +M+ AY + + L +F+ MP ++ +WT +I + +NK EALD
Sbjct: 204 SRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALD 263
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------- 255
F + + T + T VLSACA L + G+ I
Sbjct: 264 LFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALID 323
Query: 256 IYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+Y +S + + ++F + EK+++ WNS+ A +G EAL F +MT +RPN
Sbjct: 324 LYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPN 380
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
++H + K S +F+ ++D YS N S +++ FD++P R +WNT++ +Y
Sbjct: 32 SLHSHLIKTALSFDLFLANRLIDMYSKCN----SMENAQKAFDDLPIRNIHSWNTILASY 87
Query: 182 ARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT--GSDQVT 234
+R A +F++MP +I S+ T+I+S++ + + E+++ F + ++ D++T
Sbjct: 88 SRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEIT 147
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+ ++ CA LGAL+ R + G ++++ E N++ N+I +A G
Sbjct: 148 LVSIAGTCACLGALEFLRQVH------GAAIVIGL---EFNMIVCNAIVDAYGKCGDPDA 198
Query: 295 ALGMFDRMTYENV 307
+ +F RM +V
Sbjct: 199 SYSIFSRMKERDV 211
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ A +LFN + D+ SW ++IT ++QN REAL AF K + G
Sbjct: 319 NALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIR 378
Query: 230 SDQVTMATVLSACAHLG 246
++VT VLSAC+H G
Sbjct: 379 PNKVTFLAVLSACSHTG 395
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 39/218 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR--RLFDEMPERKFATWNTMIDA 180
VH V+K GF++ + + +A+VD YS + RR +LF ++ N+MI
Sbjct: 327 VHAHVYKVGFTNDIIIDSALVDMYS------KCRRPDDACKLFSDLQAYDTILLNSMITV 380
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ + +F+ MP+ + SW +MI +SQN EALD F + K G D+ ++
Sbjct: 381 YSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSL 440
Query: 236 ATVLSACAHLGALDLGRGI--------------------QIYCR----SLGRSLLVFFKL 271
A V+SACA + +L+LG I YC+ GR L F ++
Sbjct: 441 AGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKL--FDRM 498
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ + + WNS+ A +G EAL +FD+M V+P
Sbjct: 499 MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQP 536
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNK 191
F M++ Y S S+ S LFD MP + +WN +I +A+ +A LFN+
Sbjct: 74 FSWNTMIEGYLKSG----SKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNE 129
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG---SDQVTMATVLSACAHLGAL 248
MP + +W +MI Y+ N + +EA+ F + D +ATV+ AC +LGAL
Sbjct: 130 MPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGAL 189
Query: 249 DLGRGIQIYCR 259
D G+ QI+ R
Sbjct: 190 DCGK--QIHAR 198
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
W +MI+ Y N + EAL+ FN ++ G D T A+VLSAC+ LG +D +GIQ++
Sbjct: 273 WNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIID--QGIQVH 328
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+++D Y + + LF++M D W +M+ Y+ N EAL+ F++ + G
Sbjct: 477 SLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQP 536
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+T VLSAC H G ++ GR
Sbjct: 537 TDITFVGVLSACDHCGLVEEGR 558
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R A+ LF +MP + SW TMI Y ++ ++L+ F+ D + V+S
Sbjct: 59 REAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGF 114
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
A G L++ R + F ++ KN + WNS+ A +G EA+G+F +
Sbjct: 115 AKEGNLEVARRL-------------FNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDL 161
Query: 303 T 303
+
Sbjct: 162 S 162
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 30/172 (17%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
++ NT++DAYA+ E+ +F+ M D+ SW +MI Y+QN +A + F+
Sbjct: 224 DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHG 283
Query: 223 TKKSGTGS-DQVTMATVLSACAHLGALDLGRG--------------------IQIYCRSL 261
K+G G ++VT++T+L ACAH GAL +G I +YC+
Sbjct: 284 MLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKC- 342
Query: 262 GRSLLV---FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
G++ + F ++EKN+ W ++ +HGFA EAL +F +M + V+PN
Sbjct: 343 GQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 84/210 (40%), Gaps = 61/210 (29%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q GF S +FV +A++D YS K +R LFDE+P R T
Sbjct: 105 HQQALVFGFESDLFVSSALIDMYSKCGKLSNARV----LFDEIPRRNIVT---------- 150
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK---------TKKSGTGSDQVT 234
WT++IT Y QN EAL F + ++ GT D V
Sbjct: 151 ----------------WTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVA 194
Query: 235 MATVLSACAHLG---------------ALDLGRGIQ-------IYCRSLGRSLLVFFKLR 272
M +VLSAC+ + LD G++ C + S VF +
Sbjct: 195 MISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMA 254
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRM 302
EK+++ WNS+ A +G + +A +F M
Sbjct: 255 EKDVVSWNSMIAVYAQNGLSTDAFEVFHGM 284
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 56/196 (28%)
Query: 82 VFPQMQEPNVFVYHAFSSL--RHPLQAIAFYLY--MLRA------EVLLTTV-------- 123
VF M E +V +++ ++ ++ L AF ++ ML+A EV L+T+
Sbjct: 249 VFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEG 308
Query: 124 --------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
H QV K G+ + V + T+++D Y + ++R FD M E+
Sbjct: 309 ALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQ----AEMARNAFDGMKEK------ 358
Query: 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
++RSWT MI Y + REALD F + +G + +T
Sbjct: 359 --------------------NVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITF 398
Query: 236 ATVLSACAHLGALDLG 251
+VL+AC+H G L+ G
Sbjct: 399 ISVLAACSHAGFLEEG 414
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 188 LFNK-MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LFNK D+ SW ++I ++ E+L AF+ +K ++ T + +C+ L
Sbjct: 37 LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96
Query: 247 ALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITE 284
L+ G+ I +Y C L + ++F ++ +N++ W S+
Sbjct: 97 DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPNG 311
+ AHEAL +F +E NG
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNG 183
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 94/210 (44%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + GF V+ TA+V Y ++ + LFDEMPER TWN
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ----LFDEMPERNAVTWN------- 159
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+IT Y+ N++F +A+DAF G + T+ VLSAC
Sbjct: 160 -------------------ALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSAC 200
Query: 243 AHLGALDLGRGIQ--IYCRSL------GRSLL--------------VFFKLREKNLLCWN 280
+HLGA + G+ I IY L G +L+ VF ++REKN+ WN
Sbjct: 201 SHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWN 260
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ A++G AL F RM EN +P+
Sbjct: 261 VLISGYAMNGQGDAALQAFSRMLMENFKPD 290
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ N VFV TA++D Y+ +E +V F+E+ E+
Sbjct: 212 IHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKV----FEEIREK------------- 254
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ +W +I+ Y+ N Q AL AF++ D+VT VL AC
Sbjct: 255 -------------NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCAC 301
Query: 243 AHLGALDLGR 252
H G + GR
Sbjct: 302 CHQGLVTEGR 311
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 33/217 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + K+GF + +FVQ ++ Y S + ++ +L D+ A+WN +
Sbjct: 299 LHTVILKDGFDTHLFVQATLIHFYG-SCDLLDLAKMQFKLSDK---SHIASWNAFMAGIV 354
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R A LF+ MP D SW+T+++ Y Q+ AL F +G + +T+A+
Sbjct: 355 RKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLAS 414
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK- 274
LSA A+ G L+ GR I Y C S+ ++L+F ++EK
Sbjct: 415 TLSAVANSGTLEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGSVADAVLLFNHVKEKL 474
Query: 275 -NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+L WN++ +LAIHG AH +L +F ++ N++PN
Sbjct: 475 SSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPN 511
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATWNTMID 179
+H K+G S +FV+ +++ YS + ++ LFDE+P R A NT++
Sbjct: 28 LHALAAKSGLLVSNLFVRNSLLAFYSRLPSS-HAPALAHHLFDEIPLALRDAAAHNTLLA 86
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
A AR L + +MP D S+TT++T+ ++ +A+ F ++VT
Sbjct: 87 ALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQDVPPNEVT 146
Query: 235 MATVLSACAH------LG---ALDLGRGIQIY-------------CRSLGRSLLVFFKLR 272
+A V++A A LG + + RG+ + +G + VF +
Sbjct: 147 LAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVFEWMP 206
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+KN + WN++ G A MF+R+ +V
Sbjct: 207 DKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDV 241
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 56/216 (25%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +H QV + GF + + V TA+V Y+ ++R+V FD M R +W+ MI
Sbjct: 382 LAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQV----FDAMSRRDVVSWSAMI 437
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
AY +N EA + F+ K++ D VT +
Sbjct: 438 GAYV--------------------------ENGCGEEAFETFHLMKRNNVEPDVVTYINL 471
Query: 239 LSACAHLGALDLGRGIQIYCR------------------------SLGRSLLVFFKLREK 274
L+AC HLGALDL G++IY + S+ R+ +F + ++
Sbjct: 472 LNACGHLGALDL--GMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQR 529
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ WN + ++HG A EAL +FDRM E RPN
Sbjct: 530 DVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPN 565
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 77/211 (36%), Gaps = 52/211 (24%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH Q G V V TA++ Y +RRV
Sbjct: 284 AVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV----------------------- 320
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
F+KM D+ SWT MI Y++N +A F ++ G D++T +++A
Sbjct: 321 -------FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373
Query: 242 CAHLGALDLGRGI--QIYCRSLGRSLL--------------------VFFKLREKNLLCW 279
CA L L R I Q+ G LL VF + ++++ W
Sbjct: 374 CASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSW 433
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ A +G EA F M NV P+
Sbjct: 434 SAMIGAYVENGCGEEAFETFHLMKRNNVEPD 464
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H QV K GF S + TA+V Y +R+V FD + +R +T+N MI
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV----FDGLYKRDVSTFNVMIGG--- 237
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
Y+++ +A F + ++ G ++++ ++L C+
Sbjct: 238 -----------------------YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274
Query: 244 HLGALDLGRGIQIYCRSLG----------------------RSLLVFFKLREKNLLCWNS 281
AL G+ + C + G + VF K++ ++++ W
Sbjct: 275 TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTV 334
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ A + +A G+F M E ++P+
Sbjct: 335 MIRGYAENSNIEDAFGLFATMQEEGIQPD 363
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F M D+ +W MI YS + REALD F++ K + VT VLSAC+
Sbjct: 519 ARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSR 578
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
G ++ GR Y GR ++ +L + + + L G EA + +RM
Sbjct: 579 AGFVEEGRRFFSYLLD-GRGIVPTMEL-------YGCMVDLLGRAGELDEAELLINRMP- 629
Query: 305 ENVRPN 310
++PN
Sbjct: 630 --LKPN 633
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 52/220 (23%)
Query: 113 MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
MLR L V + ++G ++ ++ +S E+R+ FD + +
Sbjct: 73 MLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQT----FDSVENKTVV 128
Query: 173 TWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
TWN +I YA+L + +EA F +
Sbjct: 129 TWNAIIAGYAQLGHV--------------------------KEAFALFRQMVDEAMEPSI 162
Query: 233 VTMATVLSACAHLGALDLGRG--------------------IQIYCR--SLGRSLLVFFK 270
+T VL AC+ L LG+ + +Y + S+ + VF
Sbjct: 163 ITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDG 222
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L ++++ +N + A G +A +F RM E +PN
Sbjct: 223 LYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPN 262
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
T +H V+K GF V+V+T ++ YS S E+ +V F EM R +WN I
Sbjct: 143 TQLHALVFKVGFQFHVYVKTGLLQMYSSSGLLVEAAQV----FYEMQHRNLVSWNVFITG 198
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVT 234
+ E+ +FN+MPA + SWT +I Y++ Q +AL F K + G +VT
Sbjct: 199 LIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVT 258
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLG----------------------RSLLVFFKL- 271
+ T+ A A++G + + + + +Y G S+ FF+
Sbjct: 259 LLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITNALLDLYAKCGCIASMSRFFQEI 318
Query: 272 --REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W S A++G EAL F+ M +RPN
Sbjct: 319 PDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPN 359
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
N ++D YA+ + F ++P ++ SWT+ I+ ++ N REAL++F +K+G
Sbjct: 296 NALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTG 355
Query: 228 TGSDQVTMATVLSACAHLGALDLG 251
+ VT VLSAC+H G ++ G
Sbjct: 356 LRPNHVTFLGVLSACSHGGLVEEG 379
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++++D Y + A+ +F++MP+ ++ +WT +I Y Q++ F + + F + KS
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
++ T+++VLSACAH+GAL GR + Y C L ++LV
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +L EKN+ W ++ A HG+A +A +F M +V PN
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K G S FV+ +++ YS S F + RLFD ++ TW MID + R
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLF----DFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N EA+ F + KK+G ++++T+ +VL A
Sbjct: 182 --------------------------NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAG 215
Query: 244 HLGALDLGRGIQ-IYCRS--------LGRSLL--------------VFFKLREKNLLCWN 280
+ + GR + +Y + +G SL+ VF ++ +N++ W
Sbjct: 216 KVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWT 275
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + +F+ M +V PN
Sbjct: 276 ALIAGYVQSRCFDKGMLVFEEMLKSDVAPN 305
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 13/164 (7%)
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWT 201
++ RRV + E T+ID Y + A L+F ++ ++ +WT
Sbjct: 317 AHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWT 376
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL 261
MI ++ + R+A D F S ++VT VLSACAH G ++ GR +++
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR--RLFLSMK 434
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
GR F + E + + + G EA + +RM E
Sbjct: 435 GR-----FNM-EPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 94/210 (44%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + GF V+ TA+V Y ++ + LFDEMPER TWN
Sbjct: 111 IHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ----LFDEMPERNAVTWN------- 159
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+IT Y+ N++F +A+DAF G + T+ VLSAC
Sbjct: 160 -------------------ALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSAC 200
Query: 243 AHLGALDLGRGIQ--IYCRSL------GRSLL--------------VFFKLREKNLLCWN 280
+HLGA + G+ I IY L G +L+ VF ++REKN+ WN
Sbjct: 201 SHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWN 260
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ A++G AL F RM EN +P+
Sbjct: 261 VLISGYAMNGQGDAALQAFSRMLMENFKPD 290
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ N VFV TA++D Y+ +E +V F+E+ E+
Sbjct: 212 IHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKV----FEEIREK------------- 254
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ +W +I+ Y+ N Q AL AF++ D+VT VL AC
Sbjct: 255 -------------NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCAC 301
Query: 243 AHLGALDLGR 252
H G + GR
Sbjct: 302 CHQGLVTEGR 311
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 35/258 (13%)
Query: 82 VFPQM--QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQ 139
+FP++ + P+ F + +SL + L A + + ++ VH K G + ++V+
Sbjct: 110 LFPRLPRRNPHSFTF-LLASLSNHLDADPAVAVSIASRLMGAHVHALAVKAGAAGDLYVR 168
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMP-ERKFATWNTMIDAYAR-----LAELLFNKMP 193
A++ Y R+V FDE+P R TWN ++ Y R +A +F+ MP
Sbjct: 169 NALIHFYGVCGDVAAMRKV----FDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMP 224
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR- 252
D SW+T++ Y + + AL F G +++ + T LSA A LG L+ G+
Sbjct: 225 MRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKF 284
Query: 253 --------GIQI-------------YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
G+ + C S+ + VF + +++ WNS+ LA HG
Sbjct: 285 VHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGL 344
Query: 292 AHEALGMFDRMTYENVRP 309
H+A+ +F++ E P
Sbjct: 345 GHDAVQLFEKFVSEGFCP 362
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y++ A+ +F+ MP D+ +W +MI + + +A+ F K G
Sbjct: 303 ALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 362
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+T VL+AC+ G +D GR
Sbjct: 363 TNITFVGVLNACSRTGLVDEGR 384
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 43/282 (15%)
Query: 67 SFCTSRF---HFI-----DYTILVFPQM--QEPNVFVYHAFSSLRHPLQAIAFYLYMLRA 116
S CTS F H + + +FP++ + P+ F + +SL + L + +
Sbjct: 89 SNCTSAFASNHLLRVLPHPLPLRLFPRLPRRNPHSFTF-LLASLSNHLDTEPAAAGSIAS 147
Query: 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP-ERKFATWN 175
+ T VH K G + ++V+ A + Y R+V FDE+P R TWN
Sbjct: 148 RFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKV----FDELPIVRDVVTWN 203
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ Y R +A +F+ MP D SW+T+I Y + + AL F G +
Sbjct: 204 AVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKA 263
Query: 231 DQVTMATVLSACAHLGALDLGR---------G-----------IQIY--CRSLGRSLLVF 268
++ + T LSA A LG L+ G+ G I +Y C S+ + VF
Sbjct: 264 NEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVF 323
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +++ WNS+ LA HG H+A+ +F++ E P
Sbjct: 324 DAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPT 365
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y++ A+ +F+ MP D+ +W +MI + + +A+ F K G
Sbjct: 305 ALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 364
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+T VL+AC+ G +D GR
Sbjct: 365 TSITFVGVLNACSRTGLVDEGR 386
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
++ L+D MP R TW TMID Y +L A+ L + +P D+ ++ +M+ Y QNK
Sbjct: 252 AKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYH 311
Query: 214 REALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EAL+ F + K+S D+ T+ VLSA A LG L + +Y
Sbjct: 312 MEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQFFLGGKLWVS 371
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++LVF L K + WN+I LAIHG A M ++ +++P+
Sbjct: 372 LIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSIKPD 431
>gi|302787380|ref|XP_002975460.1| hypothetical protein SELMODRAFT_103099 [Selaginella moellendorffii]
gi|300157034|gb|EFJ23661.1| hypothetical protein SELMODRAFT_103099 [Selaginella moellendorffii]
Length = 456
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 30/201 (14%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL----AELLFNK 191
+ V+TA+++ Y +S RV F +M R +WNTM YA LLF K
Sbjct: 143 LVVRTALINMYGKCGALEDSERV----FYDMSSRNLVSWNTMFGVYADANLGDTRLLFEK 198
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
M ++ SWT+MIT+ Q + REAL +++ D++T ATVL+ACA L +L G
Sbjct: 199 MELRNLISWTSMITACFQQGKDREALHVYHRMLLEAVVPDRLTFATVLNACASLPSLKDG 258
Query: 252 RGIQIYCR--------SLGRSLLVFFK--------------LREKNLLCWNSITEALAIH 289
+ + R SLG +L+ + + E++ WNS+ A A H
Sbjct: 259 KAVHGCVRERGLAIELSLGTALVSMYGKSGSLMEAQAAFELMAERDTAAWNSMLAAYAQH 318
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G A + F RM E+V+P+
Sbjct: 319 GKARGTILAFRRMQQEDVKPD 339
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V + G + + + TA+V Y S E++ F+ M ER A WN+M+ AYA
Sbjct: 261 VHGCVRERGLAIELSLGTALVSMYGKSGSLMEAQAA----FELMAERDTAAWNSMLAAYA 316
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
Q+ + R + AF + ++ D +T VLSAC
Sbjct: 317 --------------------------QHGKARGTILAFRRMQQEDVKPDAITYVIVLSAC 350
Query: 243 AHLGALD 249
H G L+
Sbjct: 351 RHAGLLE 357
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 82/237 (34%), Gaps = 79/237 (33%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + G S V V TA+V+ YS E+R+ R + D+
Sbjct: 32 IHEKAAAGGLISNVLVGTALVNLYSKCGCLAEARKAFRMILDK----------------- 74
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ S+ +I + ++ + + L F K G + T ++L+AC
Sbjct: 75 -------------DVVSYNAIIAASAELGSYGDTLKLFYKMLLEGKRPTKATFVSLLNAC 121
Query: 243 AHLGALDLGRGIQIYCR------------------------------------------- 259
+ AL GR I Y R
Sbjct: 122 SGPAALRTGRMIHEYVRCDPDLVVRTALINMYGKCGALEDSERVFYDMSSRNLVSWNTMF 181
Query: 260 ------SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+LG + L+F K+ +NL+ W S+ A G EAL ++ RM E V P+
Sbjct: 182 GVYADANLGDTRLLFEKMELRNLISWTSMITACFQQGKDREALHVYHRMLLEAVVPD 238
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 80/325 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVF 92
L+ ++ L+ V+A I+ + + L + IS CT+ I Y +FP + P+ F
Sbjct: 98 LRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTA--GSITYARRLFPTVPNPDSF 155
Query: 93 VYHAF----SSLRHPLQAIAFYLYML---------------------RAEVLLTTVHGQV 127
++ + S + + FY ML A L +H V
Sbjct: 156 LFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHV 215
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
G+ S ++VQ A++ Y+ ++ +V++++FD MP+R WN
Sbjct: 216 MVCGYGSDMYVQAALIALYAKASDM----KVAKKVFDAMPQRTIIAWN------------ 259
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
++I+ Y QN +E++ F+ +SG D T+ ++LS+C+ LGA
Sbjct: 260 --------------SLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGA 305
Query: 248 LDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEA 285
LD G + Y LG SL+ VF ++E+N++ W ++
Sbjct: 306 LDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISG 365
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
+HG+ +A+ +F M RPN
Sbjct: 366 YGMHGYGRQAMELFTEMRAYGPRPN 390
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H NGF V + T++++ Y+ ++R V FD M ER TW
Sbjct: 312 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREV----FDSMKERNVVTW-------- 359
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
T MI+ Y + R+A++ F + + G + +T VLSAC
Sbjct: 360 ------------------TAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSAC 401
Query: 243 AHLGALDLGRGI 254
AH G +D GR +
Sbjct: 402 AHSGLIDDGRRV 413
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 80/325 (24%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVF 92
L+ ++ L+ V+A I+ + + L + IS CT+ I Y +FP + P+ F
Sbjct: 34 LRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGS--ITYARRLFPTVPNPDSF 91
Query: 93 VYHAF----SSLRHPLQAIAFYLYML---------------------RAEVLLTTVHGQV 127
++ + S + + FY ML A L +H V
Sbjct: 92 LFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHV 151
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
G+ S ++VQ A++ Y+ ++ +V++++FD MP+R WN
Sbjct: 152 MVCGYGSDMYVQAALIALYAKASDM----KVAKKVFDAMPQRTIIAWN------------ 195
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
++I+ Y QN +E++ F+ +SG D T+ ++LS+C+ LGA
Sbjct: 196 --------------SLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGA 241
Query: 248 LDLGRGIQIYCRS--------LGRSLL--------------VFFKLREKNLLCWNSITEA 285
LD G + Y LG SL+ VF ++E+N++ W ++
Sbjct: 242 LDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISG 301
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
+HG+ +A+ +F M RPN
Sbjct: 302 YGMHGYGRQAMELFTEMRAYGPRPN 326
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H NGF V + T++++ Y+ ++R V FD M ER T
Sbjct: 248 LHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREV----FDSMKERNVVT--------- 294
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
WT MI+ Y + R+A++ F + + G + +T VLSAC
Sbjct: 295 -----------------WTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSAC 337
Query: 243 AHLGALDLGRGI 254
AH G +D GR +
Sbjct: 338 AHSGLIDDGRRV 349
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 43/282 (15%)
Query: 67 SFCTSRF---HFI-----DYTILVFPQM--QEPNVFVYHAFSSLRHPLQAIAFYLYMLRA 116
S CTS F H + + +FP++ + P+ F + +SL + L + +
Sbjct: 89 SNCTSAFASNHLLRVLPHPLPLRLFPRLPRRNPHSFTF-LLASLSNHLDTEPAAAGSIAS 147
Query: 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP-ERKFATWN 175
+ T VH K G + ++V+ A + Y R+V FDE+P R TWN
Sbjct: 148 RFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKV----FDELPIVRDVVTWN 203
Query: 176 TMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ Y R +A +F+ MP D SW+T+I Y + + AL F G +
Sbjct: 204 AVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKA 263
Query: 231 DQVTMATVLSACAHLGALDLGR---------G-----------IQIY--CRSLGRSLLVF 268
++ + T LSA A LG L+ G+ G I +Y C S+ + VF
Sbjct: 264 NEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVF 323
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +++ WNS+ LA HG H+A+ +F++ E P
Sbjct: 324 DAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPT 365
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y++ A+ +F+ MP D+ +W +MI + + +A+ F K G
Sbjct: 305 ALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 364
Query: 231 DQVTMATVLSACAHLGALDLGR 252
+T VL+AC+ G +D GR
Sbjct: 365 TSITFVGVLNACSRTGLVDEGR 386
>gi|302820593|ref|XP_002991963.1| hypothetical protein SELMODRAFT_134528 [Selaginella moellendorffii]
gi|300140205|gb|EFJ06931.1| hypothetical protein SELMODRAFT_134528 [Selaginella moellendorffii]
Length = 304
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 27/175 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD MP+R +WN M+ YA+ AELLF KMP + SW +MI +Y+QN
Sbjct: 99 ARDLFDRMPDRNVVSWNAMLACYAQSSQIAQAELLFRKMPQRSLASWNSMIAAYAQNDLP 158
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL-----------------DLGRG--- 253
EAL+ F + G D++T + ++AC+ L +L D+ G
Sbjct: 159 EEALEIFTRMDLEGIAPDKITFVSAVNACSSLKSLYHGKIARMKIHESGLESDVSVGNVL 218
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
I +Y C S+ + F K+++ +++ W ++ A A G EA +FDRM +N
Sbjct: 219 ITMYGRCGSIQDARDCFDKIKDPSVVSWTALLTAYAQRGDLQEAAMVFDRMPLKN 273
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 58/194 (29%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP-ERKFATWNTMIDAY 181
+H ++ +G SS ++ ++ Y ++ V F M R +WN M +
Sbjct: 35 LHAEIIDHGLSSSTYLANLLIQLYGRCGSVADASSV----FSSMAGNRNIFSWNIMFTVF 90
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ +L LF++MP ++ SW M+ Y+Q+ Q +A
Sbjct: 91 AQQGDLGRARDLFDRMPDRNVVSWNAMLACYAQSSQIAQAE------------------- 131
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
L+F K+ +++L WNS+ A A + EAL
Sbjct: 132 -----------------------------LLFRKMPQRSLASWNSMIAAYAQNDLPEEAL 162
Query: 297 GMFDRMTYENVRPN 310
+F RM E + P+
Sbjct: 163 EIFTRMDLEGIAPD 176
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ ++G S V V ++ Y ++R FD++ + +W ++ AYA+
Sbjct: 202 KIHESGLESDVSVGNVLITMYGRCGSIQDARDC----FDKIKDPSVVSWTALLTAYAQRG 257
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+L +F++MP + SWT MIT+++Q ++A+ F + G
Sbjct: 258 DLQEAAMVFDRMPLKNEVSWTAMITAHTQFGHAQQAILLFRRMDLDG 304
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++++D Y + A+ +F++MP+ ++ +WT +I Y Q++ F + + F + KS
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
++ T+++VLSACAH+GAL GR + Y C L ++LV
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +L EKN+ W ++ A HG+A +A +F M +V PN
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K G S FV+ +++ YS S F + RLFD ++ TW MID + R
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLF----DFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N EA+ F + KK+G ++++T+ +VL A
Sbjct: 182 --------------------------NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAG 215
Query: 244 HLGALDLGRGIQ-IYCRS--------LGRSLL--------------VFFKLREKNLLCWN 280
+ + GR + +Y + +G SL+ VF ++ +N++ W
Sbjct: 216 KVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWT 275
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + +F+ M +V PN
Sbjct: 276 ALIAGYVQSRCFDKGMLVFEEMLKSDVAPN 305
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 13/164 (7%)
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWT 201
++ RRV + E T+ID Y + A L+F ++ ++ +WT
Sbjct: 317 AHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWT 376
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL 261
MI ++ + R+A D F S ++VT VLSACAH G ++ GR +++
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR--RLFLSMK 434
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
GR +L+ + C + + G EA + +RM E
Sbjct: 435 GR---FNMELKADHYAC---MVDLFGRKGLLEEAKALIERMPME 472
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 145/351 (41%), Gaps = 89/351 (25%)
Query: 6 VRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQF 65
++ ++ F+ N S +++ L CSS+ +L ++A +V + L+ +
Sbjct: 16 IKRVLFDFRTNYHSRSFNYL--------LNCCSSLPDLSRIHALVVTNGCGQNLLLSTKL 67
Query: 66 ISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYM-------- 113
I +DY +F QM + +VF+++ ++ +A+A Y M
Sbjct: 68 IITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPD 127
Query: 114 -------LRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160
+R+ +L+ VH + K+GF S VFVQ+++V YS S +
Sbjct: 128 NYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLG------ 181
Query: 161 RLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
EL+F +M +I SWT +I Y QN+ F+E L F
Sbjct: 182 ------------------------MELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVF 217
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG------------------ 262
+ SGT + VT+ +VL ACA L L+LG+ I Y LG
Sbjct: 218 REMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKC 277
Query: 263 ------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
RSL F + +NL+ WN++ A + A+ +F RM E V
Sbjct: 278 GNVETARSL--FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKV 326
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I Y + + LF+ M ++ SW MI +Y QN A+ F + +
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D +TM +V+SA L R VF +L ++++ W S+ A A H
Sbjct: 328 FDYITMVSVISA------------------YLARE--VFERLPCRSVVSWTSMIGACASH 367
Query: 290 GFAHEALGMFDRMTYENVRPN 310
G +AL +F RM E V+PN
Sbjct: 368 GHGEDALKLFSRMKDEGVKPN 388
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 37/163 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY- 181
+HG K G V + A++ Y +R LFD M + +WN MI AY
Sbjct: 251 IHGYGIKLGVDPDVSLTNALIALYGKCGNV----ETARSLFDGMVVQNLVSWNAMIAAYE 306
Query: 182 --------------------------------ARLAELLFNKMPAWDIRSWTTMITSYSQ 209
A LA +F ++P + SWT+MI + +
Sbjct: 307 QNNAGANAVKLFRRMQAEKVDFDYITMVSVISAYLAREVFERLPCRSVVSWTSMIGACAS 366
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ +AL F++ K G + T A V +AC H G ++ GR
Sbjct: 367 HGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR 409
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F++MP D+ W T+I Y+ EAL ++ +G D T V+ +CA
Sbjct: 81 ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140
Query: 245 LGALDLGRGIQ--------------------IYCRSLGRSL---LVFFKLREKNLLCWNS 281
L AL G+ + +Y +S G +L LVF ++ +N++ W +
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQS-GETLGMELVFGEMVVRNIVSWTA 199
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + + E LG+F M +PN
Sbjct: 200 VIAGYVQNRYFKEGLGVFREMVGSGTQPN 228
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG V +NG + ++D Y K ++ R+FD M + +WN++ + R
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGK----PEMACRVFDLMSNKTVVSWNSLTAGFIR 411
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ +FN++P + W TMI+ Q F +A++ F + + G +D+VTM +
Sbjct: 412 NGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGI 471
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
SAC +LGA +L + + Y C ++ VF K+ E+++
Sbjct: 472 ASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDV 531
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W + +A+ G A G+F++M + V+P+
Sbjct: 532 SAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD 565
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K G VF+Q ++ Y+ +V F+ M ER
Sbjct: 153 VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKV----FEGMSER------------- 195
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ SWT++I Y++ + +EA+ F + ++G VTM V+SAC
Sbjct: 196 -------------NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISAC 242
Query: 243 AHLGALDLGRGIQIYCRSLGRSL----------------------LVFFKLREKNLLCWN 280
A L LD+G + Y LG L +F + ++NL+ +N
Sbjct: 243 AKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYN 302
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
+I A G A EAL + D M + RP+
Sbjct: 303 TILSNYARQGLAREALAILDEMLQQGPRPD 332
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 82/317 (25%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH- 95
C I+ V+ ++VK D F+ I F H +D+ VF M E NV +
Sbjct: 148 CEGIQ----VHGSVVKMGLEEDVFIQNCLIHFYAECGH-MDHGHKVFEGMSERNVVSWTS 202
Query: 96 ---AFSSLRHPLQAIAFYLYMLRAEVLLTTV----------------HGQ-----VWKNG 131
++ P +A++ + M+ A + ++V G+ + + G
Sbjct: 203 LICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELG 262
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNK 191
+ A+VD Y ++RLFDE +R +NT++ YAR
Sbjct: 263 LKLNKVMVNALVDMYMKCGAI----DAAKRLFDECVDRNLVLYNTILSNYAR-------- 310
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
REAL ++ + G D+VTM + +SA A L L G
Sbjct: 311 ------------------QGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYG 352
Query: 252 RGIQIYC--------RSLGRSLL--------------VFFKLREKNLLCWNSITEALAIH 289
+ Y S+G ++ VF + K ++ WNS+T +
Sbjct: 353 KVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRN 412
Query: 290 GFAHEALGMFDRMTYEN 306
G A +F+++ N
Sbjct: 413 GDVESAWEVFNQIPERN 429
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 36/173 (20%)
Query: 79 TILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
I +F +MQ + + R + IA L A L VH + KNG + +
Sbjct: 449 AIELFREMQGEGI------KADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRL 502
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIR 198
TA+VD ++ R D P+ A +FNKM D+
Sbjct: 503 NTALVDMFA-------------RCGD--PQS---------------AMQVFNKMTERDVS 532
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+WT I + + A FN+ G D V VL+AC+H G ++ G
Sbjct: 533 AWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG 585
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 39/218 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR--RLFDEMPERKFATWNTMIDA 180
VH V+K GF++ + + +A+VD YS + RR +LF ++ N+MI
Sbjct: 327 VHAHVYKVGFTNDIIIDSALVDMYS------KCRRPDDACKLFSDLQAYDTILLNSMITV 380
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y+ + +F+ MP+ + SW +MI +SQN EALD F + K G D+ ++
Sbjct: 381 YSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSL 440
Query: 236 ATVLSACAHLGALDLGRGI--------------------QIYCR----SLGRSLLVFFKL 271
A V+SACA + +L+LG I YC+ GR L F ++
Sbjct: 441 AGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKL--FDRM 498
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+ + + WNS+ A +G EAL +FD+M V+P
Sbjct: 499 MKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQP 536
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 29/207 (14%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K GF++ F+ +D YS +S RV F+++ ++ +WN + A+ R EL
Sbjct: 738 KVGFNTHTFLGNRCLDLYSQLGTGNDSLRV----FEDIIDKNLISWNIFLKAFVRFGELE 793
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL---- 239
+F++MP D+ SW TMI+ Y F +A F++ +K+G T +T+L
Sbjct: 794 RARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVS 853
Query: 240 SAC--AHLGALDLGRGIQIYCRSLGRSLL--------------VFFKLREKNLLCWNSIT 283
SAC + A + G+ + +G SL+ VF + E +++ WNS+
Sbjct: 854 SACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLI 913
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
+ G+ + AL F M P+
Sbjct: 914 WSCGKSGYQNLALRQFVLMRSVGYSPD 940
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNK 191
F M++ Y S S+ S LFD MP + +WN +I +A+ +A LFN+
Sbjct: 74 FSWNTMIEGYLKSG----SKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNE 129
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG---SDQVTMATVLSACAHLGAL 248
MP + +W +MI Y+ N + +EA+ F + D +ATV+ AC +LGAL
Sbjct: 130 MPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGAL 189
Query: 249 DLGRGIQIYCR 259
D G+ QI+ R
Sbjct: 190 DCGK--QIHAR 198
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I Y + + +F M DI SW ++I S ++ AL F + G
Sbjct: 879 NSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYS 938
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
DQ T++TV++ C++L DL +G QI+ C L S+
Sbjct: 939 PDQFTVSTVITVCSNL--QDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSV 996
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
VF ++ + + + N++ + A HGF AL +F EN+RP
Sbjct: 997 RVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRP 1040
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
W +MI+ Y N + EAL+ FN ++ G D T A+VLSAC+ LG +D +GIQ++
Sbjct: 273 WNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIID--QGIQVH 328
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 67/250 (26%)
Query: 37 CSSIKELE---CVYATIVKTNANLDCFLAKQFISFCT----SRFHFIDYTILVFPQMQEP 89
CS++++LE ++A ++ FL+ +S + S+ + ++ ++ VF ++ +
Sbjct: 951 CSNLQDLEKGEQIFALCIRVG-----FLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQW 1005
Query: 90 NV---------FVYHAFS---------SLRHPLQAIAFYLYMLRAEVLL-------TTVH 124
+ + +H F +LR L+ F L ++ + V + + +H
Sbjct: 1006 DSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIH 1065
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
V K+G S V V +++V+ Y+ KF +ID+ +
Sbjct: 1066 SLVVKSGLESDVIVASSLVEMYA----------------------KFG----LIDSAMKT 1099
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
F K+ A D+ SW TMI + N + +AL+ F + G D++T+A VL AC
Sbjct: 1100 ----FAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNV 1155
Query: 245 LGALDLGRGI 254
G +D G I
Sbjct: 1156 GGLVDEGLSI 1165
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
LF++M D W +M+ Y+ N EAL+ F++ + G +T VLSAC H G
Sbjct: 494 LFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGL 553
Query: 248 LDLGR 252
++ GR
Sbjct: 554 VEEGR 558
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R A+ LF +MP + SW TMI Y ++ ++L+ F+ D + V+S
Sbjct: 59 REAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGF 114
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
A G L++ R + F ++ KN + WNS+ A +G EA+G+F +
Sbjct: 115 AKEGNLEVARRL-------------FNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDL 161
Query: 303 T 303
+
Sbjct: 162 S 162
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 120/292 (41%), Gaps = 37/292 (12%)
Query: 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHP 103
++A++++ +L + + +F +DY VF M+E ++ +++ +S +
Sbjct: 861 IHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSG 920
Query: 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---SR 160
Q +A LR VL+ +V + S+ + V + + D F RV S
Sbjct: 921 YQNLA-----LRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSN 975
Query: 161 RLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
+ F+ N + D+ +F ++ WD MI+SY+ + AL F
Sbjct: 976 SIVSSASIDLFSKCNRLEDSVR-----VFEEIYQWDSVLCNAMISSYAWHGFGENALQLF 1030
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--------------------QIYCR- 259
T + + T++ VLSA + L +D G I ++Y +
Sbjct: 1031 VLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKF 1090
Query: 260 -SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++ F K+ ++L+ WN++ LA +G +AL +F + P+
Sbjct: 1091 GLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPD 1142
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 145/351 (41%), Gaps = 89/351 (25%)
Query: 6 VRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQF 65
++ ++ F+ N S +++ L CSS+ +L ++A +V + L+ +
Sbjct: 16 IKRVLFDFRTNYHSRSFNYL--------LNCCSSLPDLSRIHALVVTNGCGQNLLLSTKL 67
Query: 66 ISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYM-------- 113
I +DY +F QM + +VF+++ ++ +A+A Y M
Sbjct: 68 IITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPD 127
Query: 114 -------LRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160
+R+ +L+ VH + K+GF S VFVQ+++V YS S +
Sbjct: 128 NYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLG------ 181
Query: 161 RLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
EL+F +M +I SWT +I Y QN+ F+E L F
Sbjct: 182 ------------------------MELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVF 217
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG------------------ 262
+ SGT + VT+ +VL ACA L L+LG+ I Y LG
Sbjct: 218 REMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKC 277
Query: 263 ------RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
RSL F + +NL+ WN++ A + A+ +F RM E V
Sbjct: 278 GNVETARSL--FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKV 326
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I Y + + LF+ M ++ SW MI +Y QN A+ F + +
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327
Query: 230 SDQVTMATVLSACAHLGALDLGR---------GIQI-------------YCRSLGRSLLV 267
D +TM +V+SACA LGAL+ GR G++I C ++ + V
Sbjct: 328 FDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREV 387
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +L ++++ W S+ A A HG +AL +F RM E V+PN
Sbjct: 388 FERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPN 430
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 161 RLFDEMPERK-----FATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
R E+ +RK + N +ID YA+ LA +F ++P + SWT+MI + + +
Sbjct: 350 RWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASH 409
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+AL F++ K G + T A V +AC H G ++ GR
Sbjct: 410 GHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR 451
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F++MP D+ W T+I Y+ EAL ++ +G D T V+ +CA
Sbjct: 81 ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140
Query: 245 LGALDLGRGIQ--------------------IYCRSLGRSL---LVFFKLREKNLLCWNS 281
L AL G+ + +Y +S G +L LVF ++ +N++ W +
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQS-GETLGMELVFGEMVVRNIVSWTA 199
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + + E LG+F M +PN
Sbjct: 200 VIAGYVQNRYFKEGLGVFREMVGSGTQPN 228
>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
Length = 718
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 95 HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
H SL L+++A VL TVH K G V V A++ ++ F
Sbjct: 73 HTLPSL---LKSMALSPAAPGVAVLALTVHAHAVKLGLERFVLVSNALIRVHA---GFLG 126
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQ 209
L +T+NT+I AYAR A LF++MP + SW+ M+ Y Q
Sbjct: 127 RLADGLLLLRTAAAVDASTFNTLITAYARAGRVADARALFDEMPVRNAVSWSAMVNGYVQ 186
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
REAL F + + D + VL+ACA GAL+ G+ + Y ++ G + VFF
Sbjct: 187 AGDAREALQIFAQMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIRITVFF 246
Query: 270 ----------------------KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++ +KN+L W ++ ++LA+HG EAL +F +M +
Sbjct: 247 GTALVDMYSKCGEVQLAMEVFERMEDKNVLAWTTMIKSLAMHGRGSEALMLFTQMVSSGL 306
Query: 308 RPNG 311
G
Sbjct: 307 VDKG 310
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 39/217 (17%)
Query: 117 EVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
E L ++HG K GF + V V TA++ YS +F R +R +FD M + TWN
Sbjct: 83 EPLGDSLHGYACKLGFDRNHVMVGTAILGMYSKRRRF----RKARLVFDRMGDXNSVTWN 138
Query: 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
TMID Y R D+ S T MI + + EAL F + + SG D V +
Sbjct: 139 TMIDGYXR------------DLISXTXMINGFVKKGLNEEALAWFREMQVSGVEPDYVAI 186
Query: 236 ATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLVFFKLRE 273
L+AC +LGAL G I +YCR + + VF K+ +
Sbjct: 187 IAALAACTNLGALSFGLWVHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEK 246
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++ WNS+ A +G AHE+L F +M E +P+
Sbjct: 247 RTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKPD 283
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F+KM + SW ++I ++ N E+L F K ++
Sbjct: 222 NSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFK 281
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 282 PDAVTFTGALTACSHVGLVEEG 303
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 39/149 (26%)
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
SWT+ IT S+N + EA + +G + +T+ +LS C+ LG + Y
Sbjct: 36 SWTSRITLLSRNGRLAEAAKELTAMRLAGVEPNHITLIALLSGCSDCEP--LGDSLHGYA 93
Query: 259 RSLG-----------------------RSLLVFFKLREKNLLCWNS---------ITEAL 286
LG ++ LVF ++ + N + WN+ I+
Sbjct: 94 CKLGFDRNHVMVGTAILGMYSKRRRFRKARLVFDRMGDXNSVTWNTMIDGYXRDLISXTX 153
Query: 287 AIHGFA-----HEALGMFDRMTYENVRPN 310
I+GF EAL F M V P+
Sbjct: 154 MINGFVKKGLNEEALAWFREMQVSGVEPD 182
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 157/385 (40%), Gaps = 99/385 (25%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFID 77
PT+ I H I ++ C+S+ +L+ + A + KT F + ++FC S I+
Sbjct: 44 PTNT--IITHPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDIN 101
Query: 78 YTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLT------------ 121
+ L+F Q+Q PN ++++ +S + F+ M++ V +
Sbjct: 102 HAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACE 161
Query: 122 ---------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
+VH VWK GF + VQ +V Y ++R +FDE+ ER
Sbjct: 162 QFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCL----GLARLVFDEISERDVV 217
Query: 173 TWNTMIDAYAR-----LAELLFNKMPAWDI--RSWTTMI---TSYSQ------NKQFREA 216
+W +MID Y++ A LF+ M + + + TMI +S SQ K F E
Sbjct: 218 SWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEY 277
Query: 217 LDAFNKTK-------------KSGT---------------GSDQVTMATVLSACAHLGAL 248
+ N T+ K G + T+A VL C LG L
Sbjct: 278 VKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTMGAAFAPMENTLACVLPVCGQLGCL 337
Query: 249 DLGRGIQ---------------------IY--CRSLGRSLLVFFKLREKNLLCWNSITEA 285
D+G+ I +Y C + + VF + E+NL+ WNS+ A
Sbjct: 338 DVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITA 397
Query: 286 LAIHGFAHEALGMFDRMTYENVRPN 310
A HG A +AL +F+RM +P+
Sbjct: 398 YASHGHAKQALSVFERMISGGFKPD 422
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ A +FN MP ++ SW +MIT+Y+ + ++AL F + G
Sbjct: 361 NALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFK 420
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
D +T+ VLSAC+H G + G+
Sbjct: 421 PDDITLVGVLSACSHGGLVAEGQ 443
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 65/246 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA-- 180
+H +V K G +V+ A+V Y + ++R+ FDEMP++ +WN ++ A
Sbjct: 3 LHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKA----FDEMPDKNAVSWNALVGAHR 58
Query: 181 ----------------------------------YARLAELLFNKMPAWDIRSWTTMITS 206
Y A +F++MP D SW ++I+
Sbjct: 59 AAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISG 118
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RG---- 253
Y++ ++ +AL F + +++G ++T+ VL ACA +G LDLG +G
Sbjct: 119 YTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVAD 178
Query: 254 -------IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
I +Y C L + VF ++ +++ CWN++ ++HG + EAL +FD M
Sbjct: 179 GLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMKI 238
Query: 305 ENVRPN 310
E PN
Sbjct: 239 E---PN 241
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 84/326 (25%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLD--CFLAKQFISFCT-SRFHFIDYTILVFPQM 86
IA+ ++KC ++ L ++A I+ + FL + +SF S ++Y +F Q+
Sbjct: 131 IASLIQKCPNLHFLRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFAQI 190
Query: 87 QEPNVFVYHAF----SSLRHPLQAIAFYLY------------------MLRAEVLLTT-- 122
P +F Y+ S ++P + ++LY +L+A +
Sbjct: 191 PNPGIFPYNTIIRGCSYAKNPSRE-PYFLYKSMVTRGFPRANTFTMAFVLKACASIMAFE 249
Query: 123 ----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
+H ++ ++GFS +VQ+++V Y E R+++++FDE+ ER
Sbjct: 250 EGRQIHARILRSGFSLNPYVQSSLVSLYGKC----EEIRLAKQVFDEITER--------- 296
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
++ W+ MI+ Y++ EAL F + ++ G D+V++ V
Sbjct: 297 -----------------NLVCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGV 339
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
+SACA GALD+GR I Y C + ++ +F + K+
Sbjct: 340 ISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEIFDYMPVKDS 399
Query: 277 LCWNSITEALAIHGFAHEALGMFDRM 302
W+S+ LAIHG A +AL MF RM
Sbjct: 400 KAWSSMIVGLAIHGLAEDALEMFSRM 425
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 185 AELLFNKMPAWDIRSWTTMI--TSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSA 241
A +F ++P I + T+I SY++N RE + G ++ TMA VL A
Sbjct: 183 ARKIFAQIPNPGIFPYNTIIRGCSYAKNPS-REPYFLYKSMVTRGFPRANTFTMAFVLKA 241
Query: 242 CAHLGALDLGRGIQ--------------------IY--CRSLGRSLLVFFKLREKNLLCW 279
CA + A + GR I +Y C + + VF ++ E+NL+CW
Sbjct: 242 CASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCW 301
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ A G +EAL MF M + P+
Sbjct: 302 SAMISGYARVGMVNEALSMFREMQEVGIEPD 332
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE-MPERKFATWNTMIDA 180
+VHG V K GF + V A+++ Y + ++ + +FDE + E ++ +I+A
Sbjct: 200 SVHGYVIKVGFGCFLNVDNALLNFYIKCKEIDDASK----MFDEFVHEGDVVSYTILINA 255
Query: 181 YAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
Y LA +F+++ D W M+ +Y + + EALD F K +G D+ TM
Sbjct: 256 YVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDENTM 315
Query: 236 ATVLSACAHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLR 272
+VL ACA + L R + + C S+ +L+ F+K+
Sbjct: 316 VSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSVEEALVTFYKME 375
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ W ++ E LA +G+ +EAL MF+RM + +RPN
Sbjct: 376 YTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPN 413
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V K G S ++VQ A+V Y + + LFD MP+R A+WN+++
Sbjct: 98 VHTHVIKTGLDSDIYVQNALVHFYGSVGNSTD----ACFLFDRMPDRDVASWNSLMGI-- 151
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
Y+ N F E + F K +D++++ VLSAC
Sbjct: 152 ------------------------YNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSAC 187
Query: 243 --AHLGALDLGRGIQIYCRSLG 262
A + L+ GR + Y +G
Sbjct: 188 AQAQMEGLEYGRSVHGYVIKVG 209
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A + F KM D+ +WT MI + N EAL FN+ + G ++ T+ +VL+AC H
Sbjct: 367 ALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTLVSVLTACIH 426
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
G + G Q++ +S++ +K++ K + + + + L+ G H+A
Sbjct: 427 SGLVK--EGCQLF-----KSMVSDYKMQLK-MEHFGCLIDLLSRAGLLHQA 469
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 44/305 (14%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA- 96
SS+ + V+ I+ ++ D FLA + I S +DY VF + ++ ++V++A
Sbjct: 91 SSLSDGLRVHRHILDNGSDQDPFLATKLIGM-YSDLGSVDYARKVFDKTRKRTIYVWNAL 149
Query: 97 FSSLR---HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
F +L H + + Y M R V ++ + +V A V + ++
Sbjct: 150 FRALTLAGHGEEVLGLYWKMNRIGV----------ESDRFTYTYVLKACVASECTADHLT 199
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYS 208
+ + + L T++D YAR A +FN MP ++ SW+ MI Y+
Sbjct: 200 KGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYA 259
Query: 209 QNKQFREALDAFNK--TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------- 257
+N + EAL F + T+ + + VTM +VL ACA L AL+ GR I Y
Sbjct: 260 KNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSI 319
Query: 258 -------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C L VF ++ +++++ WNS+ + +HG+ +A+ +F+ M
Sbjct: 320 LPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLA 379
Query: 305 ENVRP 309
P
Sbjct: 380 NGASP 384
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 24/217 (11%)
Query: 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQ 105
++A + + N ++ + +RF +DY VF M NV + A
Sbjct: 204 IHAHLTRRGYNSHVYIMTTLVDM-YARFGCVDYASYVFNGMPVRNVVSWSAM-------- 254
Query: 106 AIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR-----VSR 160
IA Y +A L T + + SSP V V S E R + R
Sbjct: 255 -IACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILR 313
Query: 161 RLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R D + + ++ Y R +L +F++M D+ SW ++I+SY + R+
Sbjct: 314 RGLDSI----LPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRK 369
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
A+ F + +G VT +VL AC+H G ++ G+
Sbjct: 370 AIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK 406
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 111/274 (40%), Gaps = 86/274 (31%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNY------SYSNKFFESRRV------------------ 158
+HG V KN F ++V T++VD Y ++ K F+ V
Sbjct: 145 IHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGD 204
Query: 159 ---SRRLFDEMPERKFATWNTMIDAYARL------------------------------- 184
+R+LFD M +R A +N MID Y ++
Sbjct: 205 MVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSED 264
Query: 185 -----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATV 238
A LF+ MP ++ SW MI Y QN + +AL F + + + ++VT+ +V
Sbjct: 265 GDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSV 324
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
L A A L ALDLG + + C +G++ LVF ++ EK+
Sbjct: 325 LPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDT 384
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ ++G A EAL +F M E PN
Sbjct: 385 GSWNALINGYGVNGCAKEALEVFAMMLREGFEPN 418
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ E L+F +M D SW +I Y N +EAL+ F + G
Sbjct: 357 NALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFE 416
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
+Q+TM +VLSAC H G ++ GR
Sbjct: 417 PNQITMTSVLSACNHCGLVEEGR 439
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF+ + + A+VD Y ++R +F++MP + W +M+ Y +L
Sbjct: 265 GFT--IKIGNALVDMYCKCGHL----SIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEA 318
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF + P D+ WT MI Y Q +F +A+ F + + D+ T+ +L+ CA L
Sbjct: 319 RELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQL 378
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
G L+ G+ I Y C + +SL +F L+EK+ W SI
Sbjct: 379 GTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSII 438
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
LA++G +AL +F M V+P+
Sbjct: 439 CGLAMNGKTSKALELFAEMVQTGVKPD 465
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 130/307 (42%), Gaps = 48/307 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTS-RFHFIDYTILVFPQMQEPNVF 92
LK C S++ L+ + I++T + +F+ CT + Y +F + P +F
Sbjct: 39 LKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLF 98
Query: 93 VYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYS 147
+Y+ AF+ +A+ + LR E L + F+ P VF +
Sbjct: 99 IYNLVIKAFTKNGSFRKAVLLF-RQLREEGL--------SPDNFTYPFVFKAIGCLGEVR 149
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
K + S FD N+++D YA + + +F +MP D+ SW
Sbjct: 150 EGEKVYGFVVKSGLEFDTY------VCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNV 203
Query: 203 MITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRS- 260
+I+ Y + +++ +A+D F + ++S ++ T+ + LSAC L L+LG+ I Y R
Sbjct: 204 LISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ 263
Query: 261 ------LGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+G +L+ +F + K ++CW S+ G EA +F+
Sbjct: 264 LGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 323
Query: 301 RMTYENV 307
R +V
Sbjct: 324 RSPVRDV 330
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+I+ YA+ + +FN + D SWT++I + N + +AL+ F + ++G D
Sbjct: 406 LIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPD 465
Query: 232 QVTMATVLSACAHLGALDLGR 252
+T VLSAC+H G ++ GR
Sbjct: 466 DITFIGVLSACSHGGLVEEGR 486
>gi|297812081|ref|XP_002873924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319761|gb|EFH50183.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 939
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 31/212 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG+V K+G S F+ ++++ Y+ ++ V F + A++N M+D YA
Sbjct: 317 IHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDAESV----FRAHAKLDSASFNIMVDGYA 372
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R L LF+ MP S+TT+I Y+QN Q+ EA++ F + + G ++VT+AT
Sbjct: 373 RSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLAT 432
Query: 238 VLSACAHLG-----------ALDLGRGIQIY-----------CRSLGRSLLVFFKLREKN 275
V+SAC+HLG A+ L +++ C L + +F ++ E+N
Sbjct: 433 VISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLLLMYCICSCLKDARKLFDEMPERN 492
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L+ WN + + G +A +FD++T +++
Sbjct: 493 LVTWNVMLNGYSKAGLIEQAKELFDQITEKDI 524
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+LFDEMPER TWN M++ Y++ A+ LF+++ DI SW TMI + Q
Sbjct: 481 ARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQITEKDIVSWGTMIDGCLRKNQL 540
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
EAL + + + G +V M +LSA A ++ +G+Q++
Sbjct: 541 DEALVYYTEMLRRGMKPSEVMMVDLLSASAR--SVGSSKGLQLH 582
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 56/258 (21%)
Query: 105 QAIAFYLYMLR-----AEVLLTTV----------------HGQVWKNGFSSPVFVQTAMV 143
+A+ +Y MLR +EV++ + HG + K GF F+Q ++
Sbjct: 542 EALVYYTEMLRRGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKMGFDCYDFLQATII 601
Query: 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIR 198
Y+ SN +++ + F+ + A+ N +I + + A +F++ DI
Sbjct: 602 HFYAVSNNL----KLALQQFEVSVKDHIASRNALIAGFVKNGMVEQAREVFDQTRDKDIF 657
Query: 199 SWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257
SW M++ Y+Q+ + AL F + S D +TM +V SA + LG+L+ G+ Y
Sbjct: 658 SWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHEY 717
Query: 258 ----------------------CRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFA 292
C S+ +L +F + + + WN+I A HG A
Sbjct: 718 LNRSSIPPNDNLIAAIINMYAKCGSIETALNIFHQTKNIFSSTISPWNAIICGSATHGHA 777
Query: 293 HEALGMFDRMTYENVRPN 310
AL ++ + ++PN
Sbjct: 778 KLALDLYSDLQSLPIKPN 795
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 22/189 (11%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN 190
VF TA+V Y+ + E++RV FD MPE+ +WN M+ AY + A+ LF+
Sbjct: 252 VFTWTAVVSGYAQNGMLEEAKRV----FDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFD 307
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA--- 247
MP ++ SW TM+T Y+Q EA F+ + D V+ A +L+A + G
Sbjct: 308 AMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQK----DAVSWAAMLAAYSQGGFSEE 363
Query: 248 -----LDLGR-GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301
++GR + C ++ + F ++ E++++ WN++ A HGF EAL +FD
Sbjct: 364 TLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDT 423
Query: 302 MTYENVRPN 310
M + +P+
Sbjct: 424 MRKTSTKPD 432
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 39/191 (20%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR------------------ 183
M+ Y+ + E+R + FD MP++ +W M+ AY++
Sbjct: 320 MLTGYAQAGMLDEARAI----FDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCA 375
Query: 184 ---------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
A F +M DI SW TMI Y+++ +EAL+ F+ +K+ T D +T
Sbjct: 376 MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDIT 435
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+ VL+AC+H G ++ +GI Y S+ R V K ++ C + + L G E
Sbjct: 436 LVGVLAACSHSGLVE--KGIS-YFYSMHRDFGVTAK--PEHYTC---MIDLLGRAGRLDE 487
Query: 295 ALGMFDRMTYE 305
A+ + M +E
Sbjct: 488 AVNLMKDMPFE 498
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LFD E +WN ++ Y + +++ +FN+MP D+ SW TM++ +++
Sbjct: 178 ARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDM 237
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
EA F+ D T V+S A G L+ + VF + E
Sbjct: 238 AEARRLFDVAPI----RDVFTWTAVVSGYAQNGMLEEAK-------------RVFDAMPE 280
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
KN + WN++ A EA +FD M NV
Sbjct: 281 KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV 314
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 29/168 (17%)
Query: 144 DNYSYSNKFFESRRVS------RRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKM 192
D++SY N + VS R LFDEMP + ++N MI ++A LA F+
Sbjct: 96 DSFSY-NTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLA 154
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P D SW M+ +Y +N + +EA D F+ S T D ++ +++
Sbjct: 155 PEKDAVSWNGMLAAYIRNGRIQEARDLFD----SRTEWDAISWNALMAG----------- 199
Query: 253 GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
+ C + + +F ++ +++++ WN++ A G EA +FD
Sbjct: 200 --YVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFD 245
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+ RLF M R +T+N M+ YA LA F +P D S+ T++ + +
Sbjct: 54 AERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSL 113
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272
+A F++ D V+ ++S+ A+ G + L R +F L
Sbjct: 114 ADARALFDEMPV----KDSVSYNVMISSHANHGLVSLARH--------------YFDLAP 155
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
EK+ + WN + A +G EA +FD T
Sbjct: 156 EKDAVSWNGMLAAYIRNGRIQEARDLFDSRT 186
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 133/339 (39%), Gaps = 75/339 (22%)
Query: 9 IITSFKKNSFPTSVSFIRIHIIANQLK--------------KCSSIKELECVYATIVKTN 54
I+ S S P S + H+I + KC +++ V+ ++
Sbjct: 56 ILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSS 115
Query: 55 ANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYML 114
C+ A IS T+ D + F +M+E V V PL + YL++
Sbjct: 116 QLGVCYNA--LISGYTANSKVSDAAFM-FRRMKETGVSVDSVTILGLVPLCTVPEYLWLG 172
Query: 115 RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
R ++HG+ K G S V V + + Y S RRLFDEMP + TW
Sbjct: 173 R------SLHGECVKGGTYSEVAVLNSFITMYMKCG----SVESGRRLFDEMPVKGLITW 222
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
N +I+ YSQN + L+ F + K SG D T
Sbjct: 223 N--------------------------AVISGYSQNGLAYDVLELFEQMKSSGVCPDPFT 256
Query: 235 MATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLR 272
+ +VLS+CAHLGA +G+ I +Y C +L ++ VF +
Sbjct: 257 LVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMP 316
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
K+L+ W ++ +HG L +FD M +RP+G
Sbjct: 317 VKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDG 355
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I YAR L +F+ MP + SWT MI Y + L F+ K G
Sbjct: 293 NALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIR 352
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D VLSAC+H G D +G++++ R++ R +KL E ++ + + L
Sbjct: 353 PDGAVFVMVLSACSHSGLTD--KGLELF-RAMKRE----YKL-EPGPEHYSCLVDLLGRA 404
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G EA+ D M E P+G
Sbjct: 405 GRLDEAMEFIDSMPVE---PDG 423
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 97/233 (41%), Gaps = 62/233 (26%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR------------ 183
V T MVD + S E+R LFD MPER +WN MI Y R
Sbjct: 196 VMAWTTMVDGVARSGNVDEARL----LFDSMPERNVVSWNAMISGYTRNHRLDEALDLFT 251
Query: 184 ------------------------LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
A LF++MP ++ +WTTM+ Y + KQ +L
Sbjct: 252 KMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGL 311
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI-QIYCRS-------LGRSLL----- 266
F SG +QVT L AC+ L L G+ + Q+ C++ +G +L+
Sbjct: 312 FRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAK 371
Query: 267 ---------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F REK+L+ WN I A A HG EA+ ++++M RPN
Sbjct: 372 CGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPN 424
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQF 213
+R LF MPER W TM+D AR A LLF+ MP ++ SW MI+ Y++N +
Sbjct: 184 ARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRL 243
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273
EALD F K S + + I + L R+ +F ++ E
Sbjct: 244 DEALDLFTKMPHRDIASCNIMITGF-----------------IQNKDLKRARKLFDEMPE 286
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ W ++ + +LG+F M +RPN
Sbjct: 287 RNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPN 323
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERK-FATWNTMIDAYARL-----AELLFNKMP 193
TA+V Y+ R +R LFD R+ TW ++ YAR AE+LF +MP
Sbjct: 75 TALVSAYARRGML----RDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMP 130
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
++ SW TM+ +Y+ + +A F++ GS + +A ++ + G++D R
Sbjct: 131 QRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRS----GSVDKARE 186
Query: 254 IQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ F ++ E++++ W ++ + +A G EA +FD M NV
Sbjct: 187 L-------------FGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNV 227
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LF+ P D+ SWT ++++Y++ R+A F+++ + VT +LS A
Sbjct: 59 ARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDAR---RNVVTWTALLSGYAR 115
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
G +D + ++F ++ ++N++ WN++ EA A+ G A +A +FDRM
Sbjct: 116 AGLVD-------------EAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPV 162
Query: 305 EN 306
+
Sbjct: 163 RD 164
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 57/200 (28%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + K F FV +A+++ Y+ + ++R+LFD E+
Sbjct: 346 VHQMICKTAFQVDTFVGSALMNVYAKCGEVG----LARKLFDLSREK------------- 388
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SW +I +Y+ + EA+ + K + +G + VT +LSAC
Sbjct: 389 -------------DLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSAC 435
Query: 243 AHLGALDLG----------RGIQI----------YCRSLGR-----SLLVFFKLREKNLL 277
+H G +D G R I + C GR L+ + K++ +
Sbjct: 436 SHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGS 495
Query: 278 CWNSITEALAIHGFAHEALG 297
W+++ HG +E++G
Sbjct: 496 VWSALLGGCNAHG--NESIG 513
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V NGF ++ +++V Y+ E+RRV
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRV------------------------- 165
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
FN+MP ++ WT+MI +Q+ +F+EA+D F + +G +D T+ATV+S+C
Sbjct: 166 -----FNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCG 220
Query: 244 HLGALDLGRGIQIYC--RSLGRSLLV--------------------FFKLREKNLLCWNS 281
+GALDLGR + YC LG+ L V F L ++++ W
Sbjct: 221 QMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTV 280
Query: 282 ITEALAIHGFAHEALGMFDRMTYEN-VRPN 310
+ A++G EAL +F +M E+ V PN
Sbjct: 281 MIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 181 YARLAELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
Y A L+ + P W D+ SW T+I Y + +AL +F++ K D+VT+ V
Sbjct: 55 YPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNV 114
Query: 239 LSACAHLGALDLG---------RGIQIYCRSLGRSLL--------------VFFKLREKN 275
L ACA GA+ +G G +I C +G SL+ VF ++ E+N
Sbjct: 115 LVACARTGAMKVGSLCHALVVLNGFEINCY-IGSSLVSMYAKCGMVEEARRVFNRMPERN 173
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++CW S+ G EA+ +F M V+ +
Sbjct: 174 VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKAD 208
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 32/198 (16%)
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
AMVD Y +R+LFDEMPER A + ++I Y + LF+K+
Sbjct: 207 AMVDGYVKCGDL----EGARKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDR 262
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D+ +W+TMI+ +QN EAL FN+ +K D++ + ++SAC+ LG + L R I+
Sbjct: 263 DLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACSQLGNITLARWIE 322
Query: 256 IY-----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
Y C ++ R+ L+F + +++ + S+ + +HG A
Sbjct: 323 GYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSA 382
Query: 293 HEALGMFDRMTYENVRPN 310
+A+ +F +M E + P+
Sbjct: 383 SKAVELFSQMLLEGITPD 400
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 28/203 (13%)
Query: 115 RAEVLLT--TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
RA L T ++H + G + +FV+TA++ Y +R LFD +
Sbjct: 117 RASSLPTGASLHAAAIRLGVDADLFVRTALIQFYGRCGAAA----AARALFDSLTNPSEV 172
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+W ++ AY ++ LF+++P ++ W M+ Y + A F++ +
Sbjct: 173 SWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERT 232
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ + L+A ++G + +F KL +++L W+++ A
Sbjct: 233 PAAYTSLIGGYLNA-----------------GNMGAARTLFDKLEDRDLFAWSTMISGCA 275
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G+ EAL +F+ + + P+
Sbjct: 276 QNGYPGEALRIFNEFQKQEICPD 298
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LLF M D+ S+ +M+ + + +A++ F++ G D VL+AC+H
Sbjct: 354 ATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSH 413
Query: 245 LGALDLGR 252
G ++ G+
Sbjct: 414 AGLVEEGK 421
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL- 184
++ G ++ T++V + S+ + R V + N +I+ YA+
Sbjct: 662 EMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG 721
Query: 185 ----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
A L+F+K+P DI SW TMI YSQN EAL+ F +K D +TMA VL
Sbjct: 722 SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLP 780
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
ACA L ALD GR I + C L + L+F + +K+L+
Sbjct: 781 ACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 840
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W + +HGF +EA+ F+ M + P+
Sbjct: 841 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD 872
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NT++D Y++ L +F KM I SWT+ I +Y + + +A+ F++ + G
Sbjct: 610 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVR 669
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D T+ +++ ACA +LD GR + Y C S+ + LV
Sbjct: 670 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 729
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
F K+ K+++ WN++ + + +EAL +F M
Sbjct: 730 FSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM 764
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 27/212 (12%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ K G + T ++ ++ K E +RV + A N++I AY +
Sbjct: 460 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 519
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+ LF+++ D+ SW +MI N L+ F + G D T+ +VL
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
A A++G L LGR + + C +L + VF K+ + ++
Sbjct: 580 AWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 639
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W S A G +A+G+FD M + VRP+
Sbjct: 640 WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D YA+ LA+LLF+ +P D+ SWT MI Y + EA+ FN+ + +G D
Sbjct: 813 LVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD 872
Query: 232 QVTMATVLSACAHLGALDLG 251
+ + + +L+AC+H G L+ G
Sbjct: 873 ESSFSVILNACSHSGLLNEG 892
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + NG S + +V Y + R++ FD++ K WN ++ YA
Sbjct: 391 VHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKI----FDKIMNDKVFLWNLLMSEYA 446
Query: 183 RLAEL-----LFNKMPAWDI----RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
++ LF KM + ++T ++ ++ + +E K G GS+
Sbjct: 447 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 506
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
+ ++++A G ++ + F +L E +++ WNS+ ++GF+
Sbjct: 507 VVNSLIAAYFKFGGVESAHNL-------------FDELSEPDVVSWNSMINGCVVNGFSG 553
Query: 294 EALGMFDRM 302
L +F +M
Sbjct: 554 NGLEIFIQM 562
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H ++ K GF S +QTA+ + Y+ +E+ +V F +M + W +++ Y
Sbjct: 408 IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV----FSKMENKNVVAWASLLTMYI 463
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ AE +F++M ++ SW MI Y+Q+ + + + K G D+VT+ +
Sbjct: 464 KCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIIS 523
Query: 238 VLSACAHLGALDLGR----------------------GIQIYCRSLGRSLLVFFKLREKN 275
+L AC L AL+ G+ G+ C + + VF K+ ++
Sbjct: 524 ILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRD 583
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ HG EA+ +F RM E V PN
Sbjct: 584 TVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPN 618
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 60/331 (18%)
Query: 16 NSFPTSVSFIRIHIIANQLKKCSSIKELECVYA--TIVKTNA-NLDCFLAKQFISFCTSR 72
N P ++F+ I LK C++ LE T+VK + D +A I+ S+
Sbjct: 174 NIEPNRITFLSI------LKACNNYSMLEKAREIHTVVKASGMETDVAVATALITM-YSK 226
Query: 73 FHFIDYTILVFPQMQEPNVFVYHAF--SSLRHPLQAIAFYLY--MLRAEVLLTTVHGQVW 128
I +F +M+E NV + A ++ +H AF LY ML+A
Sbjct: 227 CGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQA------------ 274
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL---- 184
G S +++++ + RR+ + + E N +I Y +
Sbjct: 275 --GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQ 332
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNK-QFREALDA----FNKTKKSGTGSDQVTMATV 238
A F++M D+ SW+ MI Y+Q+ Q +E+LD + ++ G ++VT ++
Sbjct: 333 DARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSI 392
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
L AC+ GAL+ GR I C S+ + VF K+ KN+
Sbjct: 393 LKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ W S+ G A +F M+ NV
Sbjct: 453 VAWASLLTMYIKCGDLTSAEKVFSEMSTRNV 483
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 28/186 (15%)
Query: 153 FESRRVSRRLFDEMP-ERKFATWNTMIDAYARLA-----ELLFNKMPAWDIRSWTTMITS 206
FE ++ + DE+ N++I+ Y++ E +F +M D+ +W++MI +
Sbjct: 94 FEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAA 153
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------- 257
Y+ N +A D F + K + +++T ++L AC + L+ R I
Sbjct: 154 YAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETD 213
Query: 258 -------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
C + + +F K++E+N++ W +I +A A H +EA ++++M
Sbjct: 214 VAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ 273
Query: 305 ENVRPN 310
+ PN
Sbjct: 274 AGISPN 279
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 131/317 (41%), Gaps = 56/317 (17%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
++ C+ ++ E V+ + + +D +L I+F S+F + VF +M +
Sbjct: 85 IEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINF-YSKFGDVASVEQVFRRMTLRD 143
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT-AMVDN 145
V + A++ HP +A + M A + + F+ +N
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI------------TFLSILKACNN 191
Query: 146 YSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSW 200
YS K +R + + E A +I Y++ E+ +F KM ++ SW
Sbjct: 192 YSMLEK---AREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSW 248
Query: 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----- 255
T +I + +Q+++ EA + + K ++G + VT ++L++C AL+ GR I
Sbjct: 249 TAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308
Query: 256 ---------------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFA-----H 293
+YC+ + + F ++ +++++ W+++ A G+
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368
Query: 294 EALGMFDRMTYENVRPN 310
E + +RM E V PN
Sbjct: 369 EVFQLLERMRREGVFPN 385
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 60/250 (24%)
Query: 30 IANQLKKCSSIKELECVYATIVKTN----ANL--------DCFLAKQFISFCTSRFHFID 77
I N KC SI E E V++ + N A+L D A++ S ++R + +
Sbjct: 427 IFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTR-NVVS 485
Query: 78 YTILVFPQMQEPNVF-VYHAFSSLR----HP--------LQAIAFYLYMLRAEVLLTTVH 124
+ +++ Q ++ V+ SS++ P L+A + R ++ VH
Sbjct: 486 WNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKL----VH 541
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
+ K G S V T+++ YS + E+R V
Sbjct: 542 AEAVKLGLESDTVVATSLIGMYSKCGEVTEARTV-------------------------- 575
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
F+K+ D +W M+ Y Q+ EA+D F + K +++T V+SAC
Sbjct: 576 ----FDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGR 631
Query: 245 LGALDLGRGI 254
G + GR I
Sbjct: 632 AGLVQEGREI 641
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 84/331 (25%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY--TILVFPQMQEP-- 89
L+ C++ +L ++ I+K + + + ++ S +S H IDY + + P+ +
Sbjct: 39 LQDCNTFSKLTQIHTQILKLGLSNNPLVLTKYTS-TSSNLHAIDYASSFIFSPESDKRLY 97
Query: 90 NVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLT---------------------T 122
+ F++ +A S+ +A+ Y ML +VL +
Sbjct: 98 DTFLFNTIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKS 157
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V K GF + V VQ MV Y E +R +FDEM +R
Sbjct: 158 VHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIE---FAREVFDEMCKR------------- 201
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSA 241
D SW+ MI Y++ + +A+D F + + G D++TM +VLSA
Sbjct: 202 -------------DPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVLSA 248
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C LGAL+LG+ ++ Y C + +++ +F ++++ ++ W
Sbjct: 249 CTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIVSW 308
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
S+ LA+HG EA+ F+ M V P+
Sbjct: 309 TSVIAGLAMHGRGLEAVEFFEEMIKSGVLPD 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
E ++ N +ID +A+ ++ LF M I SWT++I + + + EA++
Sbjct: 268 EKVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEF 327
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
F + KSG D V +LSAC+H G +D GR
Sbjct: 328 FEEMIKSGVLPDDVAFIGLLSACSHSGLVDKGR 360
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 32/198 (16%)
Query: 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW 195
AMVD Y +R+LFDEMPER A + ++I Y + LF+K+
Sbjct: 207 AMVDGYVKCGDL----EGARKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDR 262
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D+ +W+TMI+ +QN EAL FN+ +K D++ + ++SAC+ LG + L R I+
Sbjct: 263 DLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACSQLGNITLARWIE 322
Query: 256 IY-----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
Y C ++ R+ L+F + +++ + S+ + +HG A
Sbjct: 323 GYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSA 382
Query: 293 HEALGMFDRMTYENVRPN 310
+A+ +F +M E + P+
Sbjct: 383 SKAVELFSQMLLEGITPD 400
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 28/203 (13%)
Query: 115 RAEVLLT--TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172
RA L T ++H + G + +FV+TA++ Y +R LFD +
Sbjct: 117 RASSLPTGASLHAAAIRLGVDADLFVRTALIQFYGRCGAAA----AARALFDSLTNPSEV 172
Query: 173 TWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+W ++ AY ++ LF+++P ++ W M+ Y + A F++ +
Sbjct: 173 SWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERT 232
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ + L+A ++G + +F KL +++L W+++ A
Sbjct: 233 PAAYTSLIGGYLNA-----------------GNMGAARTLFDKLEDRDLFAWSTMISGCA 275
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G+ EAL +F+ + + P+
Sbjct: 276 QNGYPGEALRIFNEFQKQEICPD 298
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A LLF M D+ S+ +M+ + + +A++ F++ G D VL+AC+H
Sbjct: 354 ATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSH 413
Query: 245 LGALDLGR 252
G ++ G+
Sbjct: 414 AGLVEEGK 421
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 66/260 (25%)
Query: 77 DYTILVFPQM----QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF 132
D TIL F +M +P+ F Y + L+++ + L VH +V K+G
Sbjct: 434 DDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGL----------MVHDKVIKSGL 483
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM 192
S FV + +VD Y + DE A+ L +++
Sbjct: 484 GSDAFVASTVVDMYCKCG-----------IIDE-------------------AQKLHDRI 513
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ SW +++ +S NK+ EA F++ G D T ATVL CA+L ++LG+
Sbjct: 514 GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGK 573
Query: 253 GI--QIY--------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I QI C + SLLVF K+ +++ + WN++ A+HG
Sbjct: 574 QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 633
Query: 291 FAHEALGMFDRMTYENVRPN 310
EAL MF+RM ENV PN
Sbjct: 634 LGVEALRMFERMQKENVVPN 653
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
+GF FV ++ Y+ +RRV FD MP R +WNTM+ AY+ ++
Sbjct: 46 SGFVPTAFVSNCLLQMYARCAGAACARRV----FDAMPRRDTVSWNTMLTAYSHAGDIST 101
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
LF+ MP D+ SW +++ Y Q F+E++D F + + G D+ T A +L +C+
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161
Query: 245 LGALDLG---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNS 281
L L LG G++I CRSL +L F+ + E+N + W +
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGA 220
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 137/348 (39%), Gaps = 63/348 (18%)
Query: 1 MFVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELEC---VYATIVKTNANL 57
MF + V + ++ P +F A LK CS+++EL V+A VKT +
Sbjct: 129 MFQESVDLFVEMARRGVSPDRTTF------AVLLKSCSALEELSLGVQVHALAVKTGLEI 182
Query: 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYM 113
D + + +D + F M E N + A + ++ + ++ M
Sbjct: 183 DVRTGSALVDM-YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241
Query: 114 LR------------------AEVLLTT---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
R A L T +H KN FSS V TA+VD Y+ +N
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYAR---------LAELLFNKMPAWDIRSWTTM 203
++RR F +P T N M+ R L + + +D+ S + +
Sbjct: 302 TDARRA----FFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGV 357
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL-GRGIQIYCRSLG 262
++ ++ K + + KSG D C + LDL G+ C++L
Sbjct: 358 FSACAETKGYFQGQQVHCLAIKSGFDVD---------ICVNNAVLDLYGK-----CKALM 403
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L+F +++K+ + WN+I AL +G + + F+ M ++P+
Sbjct: 404 EAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPD 451
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 31/232 (13%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEP 89
LK C++++ LE V+ ++K+ D F+A + +C + ID + ++
Sbjct: 459 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYC--KCGIIDEAQKLHDRIGGQ 516
Query: 90 NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN 145
V ++A FS + +A F+ ML G F ++D
Sbjct: 517 QVVSWNAILSGFSLNKESEEAQKFFSEMLDM--------------GLKPDHFTFATVLDT 562
Query: 146 YSYSNKFFESRRVSRRLF-DEMPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIRS 199
+ +++ ++ EM + ++ + +T++D YA+ + L+F K+ D S
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSLLVFEKVEKRDFVS 621
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
W MI Y+ + EAL F + +K + T VL AC+H+G D G
Sbjct: 622 WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDG 673
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
++A+ + +M+R+ + V S VF A Y F+ ++V
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVS--------LSGVFSACAETKGY------FQGQQVHCLAI 378
Query: 164 DEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
+ N ++D Y + A L+F M D SW +I + QN + + +
Sbjct: 379 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLG--------------------RGIQIYC 258
FN+ + G D T +VL ACA L +L+ G + +YC
Sbjct: 439 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYC 498
Query: 259 RS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + + + ++ + ++ WN+I +++ + EA F M ++P+
Sbjct: 499 KCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 552
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 66/260 (25%)
Query: 77 DYTILVFPQM----QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF 132
D TIL F +M +P+ F Y + L+++ + L VH +V K+G
Sbjct: 434 DDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGL----------MVHDKVIKSGL 483
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM 192
S FV + +VD Y + DE A+ L +++
Sbjct: 484 GSDAFVASTVVDMYCKCG-----------IIDE-------------------AQKLHDRI 513
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ SW +++ +S NK+ EA F++ G D T ATVL CA+L ++LG+
Sbjct: 514 GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGK 573
Query: 253 GI--QIY--------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I QI C + SLLVF K+ +++ + WN++ A+HG
Sbjct: 574 QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 633
Query: 291 FAHEALGMFDRMTYENVRPN 310
EAL MF+RM ENV PN
Sbjct: 634 LGVEALRMFERMQKENVVPN 653
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
+GF FV ++ Y+ +RRV FD MP R +WNTM+ AY+ ++
Sbjct: 46 SGFVPNAFVSNCLLQMYARCAGAACARRV----FDAMPRRDTVSWNTMLTAYSHAGDIST 101
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
LF+ MP D+ SW +++ Y Q F+E++D F + + G D+ T A +L +C+
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161
Query: 245 LGALDLG---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNS 281
L L LG G++I CRSL +L F+ + E+N + W +
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGA 220
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 137/348 (39%), Gaps = 63/348 (18%)
Query: 1 MFVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELEC---VYATIVKTNANL 57
MF + V + ++ P +F A LK CS+++EL V+A VKT +
Sbjct: 129 MFQESVDLFVEMARRGVSPDRTTF------AVLLKSCSALEELSLGVQVHALAVKTGLEI 182
Query: 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYM 113
D + + +D + F M E N + A + ++ + ++ M
Sbjct: 183 DVRTGSALVDM-YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241
Query: 114 LR------------------AEVLLTT---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
R A L T +H KN FSS V TA+VD Y+ +N
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYAR---------LAELLFNKMPAWDIRSWTTM 203
++RR F +P T N M+ R L + + +D+ S + +
Sbjct: 302 TDARRA----FFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGV 357
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL-GRGIQIYCRSLG 262
++ ++ K + + KSG D C + LDL G+ C++L
Sbjct: 358 FSACAETKGYFQGQQVHCLAIKSGFDVD---------ICVNNAVLDLYGK-----CKALM 403
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L+F +++K+ + WN+I AL +G + + F+ M ++P+
Sbjct: 404 EAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPD 451
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 31/232 (13%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEP 89
LK C++++ LE V+ ++K+ D F+A + +C + ID + ++
Sbjct: 459 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYC--KCGIIDEAQKLHDRIGGQ 516
Query: 90 NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN 145
V ++A FS + +A F+ ML G F ++D
Sbjct: 517 QVVSWNAILSGFSLNKESEEAQKFFSEML--------------DMGLKPDHFTFATVLDT 562
Query: 146 YSYSNKFFESRRVSRRLF-DEMPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIRS 199
+ +++ ++ EM + ++ + +T++D YA+ + L+F K+ D S
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSLLVFEKVEKRDFVS 621
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
W MI Y+ + EAL F + +K + T VL AC+H+G D G
Sbjct: 622 WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDG 673
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
++A+ + +M+R+ + V S VF A Y F+ ++V
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVS--------LSGVFSACAETKGY------FQGQQVHCLAI 378
Query: 164 DEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
+ N ++D Y + A L+F M D SW +I + QN + + +
Sbjct: 379 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLG--------------------RGIQIYC 258
FN+ + G D T +VL ACA L +L+ G + +YC
Sbjct: 439 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYC 498
Query: 259 RS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + + + ++ + ++ WN+I +++ + EA F M ++P+
Sbjct: 499 KCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 552
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 132/325 (40%), Gaps = 79/325 (24%)
Query: 36 KCSSIKELECVYAT-IVKTNANLDCFLAKQ-FISFCTSRFHFIDYTILVFPQMQEPNVFV 93
KC+++ +L+ V+A IV D F A + F S S F + +F PN F+
Sbjct: 27 KCTTLDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFHSTPRPNSFM 86
Query: 94 YHAF-SSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQVWKNG 131
++ + H A++ Y+ M R+ VL VH V K G
Sbjct: 87 WNTLIRAQTHAPHALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIKFG 146
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNK 191
V A+V YS S +R+V FDE PE+ + W
Sbjct: 147 LDFDSHVVDALVRCYSVSGHCVSARQV----FDETPEKISSLW----------------- 185
Query: 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
TTM+ Y+QN EAL F G T+A+VLSACA G L+LG
Sbjct: 186 ---------TTMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELG 236
Query: 252 RGIQIYCR----SLGRSLL--------------------VFFKLREKNLLCWNSITEALA 287
I + + LG ++ +F ++ E+N++ WN++ L
Sbjct: 237 ERIHEFMKVKGVGLGEGVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLG 296
Query: 288 IHGFAHEALGMFDRMTYEN-VRPNG 311
+G+ +ALG+F++M E V PNG
Sbjct: 297 AYGYVDDALGLFEKMKKEGVVVPNG 321
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 37/222 (16%)
Query: 123 VHGQVWK--NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF-ATWNTMID 179
VHG V++ F V + +VD Y+ + + V L P + A W +++
Sbjct: 241 VHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETV---LSVVKPGKSVVAAWTSLVS 297
Query: 180 AYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
AYA ++A LF++M D+ SWT MI+ YS F+EAL+ F K + G D+V
Sbjct: 298 AYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVA 357
Query: 235 MATVLSACAHLGALDLGRGIQ----------------------IY--CRSLGRSLLVFFK 270
+ LSACA LGAL+LGR I +Y C S+ +L VF K
Sbjct: 358 VVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRK 417
Query: 271 LRE--KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ K +NSI LA HG A +F+ M ++P+
Sbjct: 418 TSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPD 459
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 129/334 (38%), Gaps = 86/334 (25%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISF--CTSRFHFIDYTILVFPQMQ 87
I + L C ++++ +YA I+ T + + L+ +F +S + ++ +F Q+
Sbjct: 17 IKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQIT 76
Query: 88 EPNVFVYHA----FSSLRHPLQ-AIAFYLYMLRAEVLLTT-------------------- 122
P++F+++A +S + P Q + + ML + VL +
Sbjct: 77 NPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQF 136
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
VH V +NGF S VFV A+++ Y + +V FDE R ++NTMI+
Sbjct: 137 GFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKV----FDESFVRDCVSFNTMIN 192
Query: 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
+AR ++ + FR F + + D+ T +L
Sbjct: 193 GFARKGDV----------------------SGCFR----VFGEMRGVCVRPDEYTFVALL 226
Query: 240 SACAHLGALDLGRGIQ-IYCRSLG-------------------------RSLLVFFKLRE 273
S C+ L +GR + + R LG ++L K +
Sbjct: 227 SGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGK 286
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ W S+ A A+ G A +FD+M +V
Sbjct: 287 SVVAAWTSLVSAYALRGEVKVARRLFDQMGERDV 320
>gi|125532999|gb|EAY79564.1| hypothetical protein OsI_34697 [Oryza sativa Indica Group]
Length = 529
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HG + +GF S + + +++VD Y+ ++ LF+EMP + W T++
Sbjct: 213 LARQLHGHLILHGFLSDIRIASSLVDVYTKCVCIADAED----LFNEMPVKSERMWTTLV 268
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YA +L LF++MP +I SW +++ Y ++ Q EAL F K G DQ+
Sbjct: 269 CGYAEDGQLSTARRLFDQMPKKNILSWNSLMEGYVRHGQEAEALSIFQHLIKEGVHPDQI 328
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSL--------------------------GRSLLV 267
T ++ ACA + AL G+ QI+ R L R +
Sbjct: 329 TFSSCFRACAAVCALKCGQ--QIHGRLLRTGFYPNVMILSSLIDMYSRCGYLADARQVFS 386
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+K+ L WN++ AL HG E +G F +M E +P+
Sbjct: 387 LAVQEKKDTLLWNALLGALCHHGHGQEVIGSFVQMIRERWKPD 429
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLA 185
G V T + ++ N R +RRLF MP ++N M+ Y A A
Sbjct: 87 GLKRLVPCSTQLANHLLSLNFLLRRPRDARRLFARMPLPDVCSYNAMLAGYARLALAAPA 146
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG---SDQVTMATVLSAC 242
+F MP D+ S+ + + + + ++A+ +++ + + T SDQ +A +L C
Sbjct: 147 AEVFAAMPHRDLLSYNATLLALAGGGEMQKAVALYSELRGTSTSLGYSDQTFLA-LLVGC 205
Query: 243 AHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWN 280
L +L R + +Y C + + +F ++ K+ W
Sbjct: 206 EKLVDRELARQLHGHLILHGFLSDIRIASSLVDVYTKCVCIADAEDLFNEMPVKSERMWT 265
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ A G A +FD+M +N+
Sbjct: 266 TLVCGYAEDGQLSTARRLFDQMPKKNI 292
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 154/333 (46%), Gaps = 55/333 (16%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
+S+ ++P+S + + L KC+S+KEL+ + A +KT+ D + + I+ CT
Sbjct: 18 SSYYNTTYPSS--------LLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCT 69
Query: 71 SR--FHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVH 124
+DY +F + +P++ ++++ +S PL+AI+ ++ L +L
Sbjct: 70 QNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLL----- 124
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184
+ ++ P ++ +V K + L +E P T+I+ YA
Sbjct: 125 ----PDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGL-NENP----YVCPTLINMYAGC 175
Query: 185 -----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
A+ +F+++ + S+ +IT Y+++ + EAL F + + + VT+ +VL
Sbjct: 176 NDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVL 235
Query: 240 SACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLL 277
S+CA LGALDLG+ I Y C SL ++ VF + ++
Sbjct: 236 SSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQ 295
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W+++ A A+HG + + MF+ M V+P+
Sbjct: 296 AWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPD 328
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 112/277 (40%), Gaps = 65/277 (23%)
Query: 3 VKYVRAIITSFKKNSFPTSVSF---IRIHIIANQLKKCSSIKELECVYATIVKTNANLDC 59
+K + I + N P +F ++ ++A ++ K+L C+ +K N +
Sbjct: 109 LKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQG---KQLHCL---AIKLGLNENP 162
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFY----- 110
++ I+ + + +D VF ++ EP V Y+A ++ P +A++ +
Sbjct: 163 YVCPTLINM-YAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQA 221
Query: 111 ----------LYMLRAEVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
L +L + LL +H V KNG V V TA++D Y+
Sbjct: 222 RKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYA------- 274
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214
K + + I +F M D ++W+ MI +Y+ + Q +
Sbjct: 275 ---------------KCGSLDGAIS--------VFESMSVRDTQAWSAMIVAYAMHGQGQ 311
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+ + F + ++ D++T +L AC+H G +D G
Sbjct: 312 DVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEG 348
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 131/314 (41%), Gaps = 50/314 (15%)
Query: 34 LKKCSSI---KELECVYATIVKTNANLDCFLAKQFISF---CTSRFHFIDYTI-LVFPQM 86
L+ C+ + + CV+ IV+ D F+ + C VF +M
Sbjct: 17 LRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQVFDEM 76
Query: 87 QEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM 142
+ +V +++ + S A+ F+ M V+ W + M
Sbjct: 77 VDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVV-------SWNTVVAGNAVSWNLM 129
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDI 197
+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP ++
Sbjct: 130 ISGYAMSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNL 185
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQI 256
SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++ I
Sbjct: 186 VSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISS 245
Query: 257 Y----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+ C +GR+ +F+K+ + ++ W ++ A +G +
Sbjct: 246 FIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRD 305
Query: 295 ALGMFDRMTYENVR 308
AL +++ M E V+
Sbjct: 306 ALLVYNNMCREGVQ 319
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ AE +F KM I +WTTMI+ ++ N R+AL +N + G
Sbjct: 260 NALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQ 319
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D L+ACAH G L G I
Sbjct: 320 LDDTVFIAALAACAHGGLLQEGWSI 344
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 66/260 (25%)
Query: 77 DYTILVFPQM----QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF 132
D TIL F +M +P+ F Y + L+++ + L VH +V K+G
Sbjct: 476 DDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGL----------MVHDKVIKSGL 525
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM 192
S FV + +VD Y + DE A+ L +++
Sbjct: 526 GSDAFVASTVVDMYCKCG-----------IIDE-------------------AQKLHDRI 555
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ SW +++ +S NK+ EA F++ G D T ATVL CA+L ++LG+
Sbjct: 556 GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGK 615
Query: 253 GI--QIY--------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
I QI C + SLLVF K+ +++ + WN++ A+HG
Sbjct: 616 QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 675
Query: 291 FAHEALGMFDRMTYENVRPN 310
EAL MF+RM ENV PN
Sbjct: 676 LGVEALRMFERMQKENVVPN 695
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
+GF FV ++ Y+ +RRV FD MP R +WNTM+ AY+ ++
Sbjct: 88 SGFVPTAFVSNCLLQMYARCAGAACARRV----FDAMPRRDTVSWNTMLTAYSHAGDIST 143
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
LF+ MP D+ SW +++ Y Q F+E++D F + + G D+ T A +L +C+
Sbjct: 144 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 203
Query: 245 LGALDLG---------RGIQI-------------YCRSLGRSLLVFFKLREKNLLCWNS 281
L L LG G++I CRSL +L F+ + E+N + W +
Sbjct: 204 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGA 262
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 137/348 (39%), Gaps = 63/348 (18%)
Query: 1 MFVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELEC---VYATIVKTNANL 57
MF + V + ++ P +F A LK CS+++EL V+A VKT +
Sbjct: 171 MFQESVDLFVEMARRGVSPDRTTF------AVLLKSCSALEELSLGVQVHALAVKTGLEI 224
Query: 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSL----RHPLQAIAFYLYM 113
D + + +D + F M E N + A + ++ + ++ M
Sbjct: 225 DVRTGSALVDM-YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 283
Query: 114 LR------------------AEVLLTT---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
R A L T +H KN FSS V TA+VD Y+ +N
Sbjct: 284 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 343
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYAR---------LAELLFNKMPAWDIRSWTTM 203
++RR F +P T N M+ R L + + +D+ S + +
Sbjct: 344 TDARRA----FFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGV 399
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL-GRGIQIYCRSLG 262
++ ++ K + + KSG D C + LDL G+ C++L
Sbjct: 400 FSACAETKGYFQGQQVHCLAIKSGFDVD---------ICVNNAVLDLYGK-----CKALM 445
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ L+F +++K+ + WN+I AL +G + + F+ M ++P+
Sbjct: 446 EAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPD 493
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 31/232 (13%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFIS-FCTSRFHFIDYTILVFPQMQEP 89
LK C++++ LE V+ ++K+ D F+A + +C + ID + ++
Sbjct: 501 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYC--KCGIIDEAQKLHDRIGGQ 558
Query: 90 NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN 145
V ++A FS + +A F+ ML G F ++D
Sbjct: 559 QVVSWNAILSGFSLNKESEEAQKFFSEML--------------DMGLKPDHFTFATVLDT 604
Query: 146 YSYSNKFFESRRVSRRLF-DEMPERKFATWNTMIDAYARLAE-----LLFNKMPAWDIRS 199
+ +++ ++ EM + ++ + +T++D YA+ + L+F K+ D S
Sbjct: 605 CANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSLLVFEKVEKRDFVS 663
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
W MI Y+ + EAL F + +K + T VL AC+H+G D G
Sbjct: 664 WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDG 715
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
++A+ + +M+R+ + V S VF A Y F+ ++V
Sbjct: 375 IEAMGLFQFMIRSSIRFDVVS--------LSGVFSACAETKGY------FQGQQVHCLAI 420
Query: 164 DEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
+ N ++D Y + A L+F M D SW +I + QN + + +
Sbjct: 421 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 480
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLG--------------------RGIQIYC 258
FN+ + G D T +VL ACA L +L+ G + +YC
Sbjct: 481 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYC 540
Query: 259 RS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + + + ++ + ++ WN+I +++ + EA F M ++P+
Sbjct: 541 KCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 594
>gi|147821710|emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]
Length = 717
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M++ Y+ K E++R LFDEMPER +WN+M+ + + + LF++MP D
Sbjct: 302 MINGYAIVGKIDEAKR----LFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRD 357
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256
+ SW +M+ Y+Q + E L F++ + G + T+ ++LSACAHLGALD G +
Sbjct: 358 VVSWNSMLACYAQCGKPNEVLALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 417
Query: 257 Y 257
Y
Sbjct: 418 Y 418
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 143/319 (44%), Gaps = 55/319 (17%)
Query: 22 VSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH-FIDYTI 80
++F+ I+I + C +++ L+ ++A I+ T+ N L+ S F F+ Y
Sbjct: 97 MAFMSIYI--SLFNPCKTLRHLKQLHAQII-THHNSPFPLSALASLSALSPFPTFLAYAK 153
Query: 81 LVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA-----------------EVL 119
+F +Q P+ +Y+ A SS + PL+A+ Y L++ E
Sbjct: 154 TIFHHLQNPSPSLYNSLIRALSSSKTPLEALPLYHTKLQSGLKPDHMTYPFVIKACNESS 213
Query: 120 LT----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+T VH V K+GF ++ ++++ Y+ +++LF+ +R +WN
Sbjct: 214 MTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLV----AAKQLFNLCSDRDLVSWN 269
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
MID Y + E+ +F++M D+ SW TMI Y+ + EA F
Sbjct: 270 AMIDGYVKRGEMGHARIVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLF---------- 319
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D++ ++S + L + C ++ + +F ++ ++++ WNS+ A G
Sbjct: 320 DEMPERNLVSWNSMLAGF-------VKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCG 372
Query: 291 FAHEALGMFDRMTYENVRP 309
+E L +FD+M V+P
Sbjct: 373 KPNEVLALFDQMRAVGVKP 391
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 116/251 (46%), Gaps = 38/251 (15%)
Query: 94 YHAFSSLRHPLQAIAFYLYMLRAEVLL-----TTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
YH +SL L F L + +L T+VH + K GF S FV +A+VD Y
Sbjct: 51 YHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASALVDMYGK 110
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMP-AWDIRSWTT 202
F +R+ LFDE+P+R WN MI Y R A +F+ M ++ ++
Sbjct: 111 CACIFSARK----LFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFNA 166
Query: 203 MITSYSQNKQFR-EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC--- 258
+I S K +A+ + K ++ G + +T+ +L AC + AL+L R I Y
Sbjct: 167 LIYGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLALLPACVGIAALNLIREIHGYSIRN 226
Query: 259 -----RSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
LG LL VF ++E++++ W+S+ A A+HG A AL +F
Sbjct: 227 DIDRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVAWSSLISAYALHGEAKNALEIF 286
Query: 300 DRMTYENVRPN 310
+M V+P+
Sbjct: 287 RQMELAKVQPD 297
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 168 ERKFATWNTMIDAYARLAELL-----FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+R + ++DAY R L+ F M D+ +W+++I++Y+ + + + AL+ F +
Sbjct: 229 DRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVAWSSLISAYALHGEAKNALEIFRQ 288
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALD 249
+ + D +T VL AC+H G D
Sbjct: 289 MELAKVQPDDITFLAVLKACSHAGLAD 315
>gi|18854997|gb|AAL79689.1|AC087599_8 hypothetical protein [Oryza sativa Japonica Group]
gi|31433572|gb|AAP55070.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125575734|gb|EAZ17018.1| hypothetical protein OsJ_32505 [Oryza sativa Japonica Group]
Length = 529
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HG + +GF S + + +++VD Y+ ++ LF+EMP + W T++
Sbjct: 213 LARQLHGHLILHGFLSDIRIASSLVDVYTKCVCIADAED----LFNEMPVKSERMWTTLV 268
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
YA +L LF++MP +I SW +++ Y ++ Q EAL F K G DQ+
Sbjct: 269 CGYAEDGQLSTARRLFDQMPKKNILSWNSLMEGYVRHGQEAEALSIFQHLIKEGVHPDQI 328
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSL--------------------------GRSLLV 267
T ++ ACA + AL G+ QI+ R L R +
Sbjct: 329 TFSSCFRACAAVCALKCGQ--QIHGRLLRTGFYPNVMILSSLIDMYSRCGYLADARQVFS 386
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+K+ L WN++ AL HG E +G F +M E +P+
Sbjct: 387 LAVQEKKDTLLWNALLGALCHHGHGQEVIGSFVQMIRERWKPD 429
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY-----ARLA 185
G V T + ++ N R +RRLF MP ++N M+ Y A A
Sbjct: 87 GLKRLVPCSTQLANHLLSLNFLLRRPRDARRLFARMPLPDVCSYNAMLAGYARLALAAPA 146
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG---SDQVTMATVLSAC 242
+F MP D+ S+ + + + + ++A+ +++ + + T SDQ +A +L C
Sbjct: 147 AEVFAAMPHRDLLSYNATLLALAGGGEMQKAVALYSELRGTSTSLGYSDQTFLA-LLVGC 205
Query: 243 AHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWN 280
L +L R + +Y C + + +F ++ K+ W
Sbjct: 206 EKLVDRELARQLHGHLILHGFLSDIRIASSLVDVYTKCVCIADAEDLFNEMPVKSERMWT 265
Query: 281 SITEALAIHGFAHEALGMFDRMTYENV 307
++ A G A +FD+M +N+
Sbjct: 266 TLVCGYAEDGQLSTARRLFDQMPKKNI 292
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/411 (22%), Positives = 156/411 (37%), Gaps = 128/411 (31%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDC--FLAKQFISFC------TSRFHFIDYT 79
H + L+ C+S+ L+ +++++ L FLA+ I + ++R F
Sbjct: 26 HFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRH 85
Query: 80 ILVFPQMQEPNVFV----YHAFSSLRHPLQAIAFYLYMLR-------------------- 115
Q PN F+ A+++ +AI Y+YM R
Sbjct: 86 HHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASE 145
Query: 116 -AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRR------------- 161
V VHGQV + GF S +FV+ A+VD Y+ + ++ V R
Sbjct: 146 LGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMI 205
Query: 162 --------------LFDEMPERKF------------------------------------ 171
LF +M E F
Sbjct: 206 TLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFI 265
Query: 172 ---ATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
+ N+++ YA+ A L+F++M + SW +M++ Y+QN + +AL FN+
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQ----------------------IYCRSL 261
+ S + VT ++SAC++LG+ LGR + + C L
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDL 385
Query: 262 GRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ +F +L E+++ WN + +HG EAL +F RM E V PN
Sbjct: 386 DTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPN 436
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 81 LVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV 136
LVF +M+E N ++ ++ P A++ + M +E +PV
Sbjct: 289 LVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASEC-------------DPNPV 335
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN- 190
MV SY R++ + + N ++D Y + +L +FN
Sbjct: 336 -TALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNN 394
Query: 191 -KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
++ D+ SW +I+ Y + +EAL+ F++ + G + +T ++LSAC+H G +D
Sbjct: 395 CELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLID 454
Query: 250 LGR 252
GR
Sbjct: 455 EGR 457
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 37/215 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V G + V +++D YS S RRV FDEM ER +WN+MI Y
Sbjct: 485 VHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRV----FDEMVERDVLSWNSMISGYC 540
Query: 183 -RLAELL--FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVL 239
R+ + L F M +D+ +W MI + + AL+ F+K ++SG ++Q+T++TVL
Sbjct: 541 KRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVL 600
Query: 240 SACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKN 275
AC DL G Q++ C +G + +F + ++
Sbjct: 601 PAC------DLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRD 654
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ WN++ +HG AL + M++ +V PN
Sbjct: 655 LVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPN 689
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A+ LF+K+ ++ +WT ++ YS+N E + +++ K G D+ V AC
Sbjct: 416 AQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQ 475
Query: 245 LGALDLGRGIQIY--------------CRSL----------GRSLLVFFKLREKNLLCWN 280
L L++ GIQ++ C SL G VF ++ E+++L WN
Sbjct: 476 LLWLEV--GIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWN 533
Query: 281 SITEALAIHGFA---HEALGMFDRM 302
S+ I G+ +AL +F+ M
Sbjct: 534 SM-----ISGYCKRIQDALNVFELM 553
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN +I Y++ + +F+ M + D+ SW TMI + + + AL S
Sbjct: 627 WNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDV 686
Query: 229 GSDQVTMATVLSACAHLGALDLG 251
+ VT + LSAC+H G +D G
Sbjct: 687 CPNSVTFTSALSACSHSGLVDEG 709
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 55/284 (19%)
Query: 76 IDYTILVFPQMQEPNVFVYHAFSSLRHPL----QAIAFYLYMLRAEVL-LTTVHGQVWKN 130
ID + +F +M E NV ++ S+ +A + M +V+ T + + KN
Sbjct: 162 IDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKN 221
Query: 131 GF------------SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
G V AM+ Y+ + + E+ LF+ MPER +WNTMI
Sbjct: 222 GRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALD----LFERMPERDLPSWNTMI 277
Query: 179 -----DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQ 232
+ R A LFN+MP ++ SWTTMIT Q + EAL F++ +G +Q
Sbjct: 278 TGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQ 337
Query: 233 VTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVF 268
T +VL AC++L L G G Q++ C LG + +F
Sbjct: 338 GTFVSVLGACSNLAGL--GEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMF 395
Query: 269 FK--LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++L+ WN I A A HG+ EA+ F M +P+
Sbjct: 396 DDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPD 439
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 45/234 (19%)
Query: 82 VFPQMQEPNVFVYHAFSSLRHPLQAIAFYL---YMLRAEVLLTTVHGQVWKNGFSSPVFV 138
+F +M+EP+V + I+ Y+ + A L V + KN V
Sbjct: 74 LFDEMREPDVITWTT---------VISGYIKCGMIEEARRLFDRVDAK--KN-----VVT 117
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP 193
TAMV Y SNK + + +LF+EMP + +WNTMID YA+ + LF KMP
Sbjct: 118 WTAMVGGYIRSNKISD----AEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP 173
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
++ SW T+++ +Q + EA F++ + D ++ +++ + G +D R
Sbjct: 174 ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPE----RDVISWTAMIAGLSKNGRIDEAR- 228
Query: 254 IQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
L+F ++ E+N++ WN++ A + EAL +F+RM ++
Sbjct: 229 ------------LLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDL 270
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 100/256 (39%), Gaps = 76/256 (29%)
Query: 89 PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
P ++YH+ + R +I + TV G V + + M+ N S
Sbjct: 23 PGFYLYHSINDYRTAKISIPRKDF---------TVDGNVARCNW---------MITNLSK 64
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------------------------ 184
+ E+RR LFDEM E TW T+I Y +
Sbjct: 65 DGRIMEARR----LFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTA 120
Query: 185 -------------AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
AE LFN+MP ++ SW TMI Y+QN + A+ F K +
Sbjct: 121 MVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV--- 177
Query: 232 QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
V+ TV+S A G ++ R +F ++ E++++ W ++ L+ +G
Sbjct: 178 -VSWNTVMSMLAQCGRIEEAR-------------RLFDRMPERDVISWTAMIAGLSKNGR 223
Query: 292 AHEALGMFDRMTYENV 307
EA +FDRM NV
Sbjct: 224 IDEARLLFDRMPERNV 239
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 40/182 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE-MPERKFATWNTMIDAY 181
VH + K + FV +A+++ YS + +R++FD+ M ++
Sbjct: 359 VHQIISKTVYQDSTFVVSALINMYSKCGELG----TARKMFDDGMTSQR----------- 403
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
D+ SW +I +Y+ + +EA++ F + +KSG D VT +LSA
Sbjct: 404 --------------DLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSA 449
Query: 242 CAHLGALDLGRGIQIYCRSL-GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
C+H G ++ G++ + + RS+LV RE + C + + G EA G +
Sbjct: 450 CSHAGLVE--EGLKYFDELVKDRSILV----REDHYAC---LVDLCGRAGRLKEAFGFIE 500
Query: 301 RM 302
R+
Sbjct: 501 RL 502
>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 34/220 (15%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +HG V +G V + AMVD YS + + ++R LF++M + +W +MI
Sbjct: 191 LREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDART----LFNQMSIQDTVSWTSMIA 246
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
Y R L +F+ MP D +WT +I+ + QN + ALD F + G
Sbjct: 247 GYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFA 306
Query: 235 MATVLSACAHLGALDLGRGIQIY-------------------------CRSLGRSLLVFF 269
+ + L ACA LG + GR + + C + ++LVF
Sbjct: 307 LVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFA 366
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ E++ + WNS+ + +G ++L MF RM V+P
Sbjct: 367 RMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQP 406
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ + L+F +M D SW +M+T +S N Q +++L F + +
Sbjct: 346 NALIDMYSKCGDMATAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQ 405
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
VT VL+AC+H G + GR I
Sbjct: 406 PTYVTFLAVLTACSHAGLVTDGRRI 430
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 19/132 (14%)
Query: 136 VFVQTAMVDNYSYSNKFFE------SRRVSRRLFDEMPERKFATWNTMIDAYARLAELL- 188
+ ++TA+ + SN+ E S SR F+++P R ++N ++ A +R + L
Sbjct: 57 LLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLAALSRGSATLP 116
Query: 189 -----FNKMPA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKS-----GTGSDQVTMA 236
+ MPA ++ S+ T+I++ ++N + EAL F + + D+ +
Sbjct: 117 DALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVALDRFAVV 176
Query: 237 TVLSACAHLGAL 248
+V SACA +GAL
Sbjct: 177 SVASACAGMGAL 188
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 114 LRAEVLLTTVHGQVWKN-GFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
L+ VL +VHG V + G + + + A++D Y+ + + RV FDE ER
Sbjct: 242 LKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRV----FDEAGERDG 297
Query: 172 ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+WNTM+ +A LA F + PA DI SW ++ Y++ ++F + F+ S
Sbjct: 298 ISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLAS 357
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCR--SLGRS 264
D+VT T++SA A G L+ R + +YC+ S+ +
Sbjct: 358 SVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLA 417
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF K +K++ W ++ LA HG AL +F +M E PNG
Sbjct: 418 YAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNG 464
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 30/130 (23%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VHG V K + F+ +A+VD Y
Sbjct: 384 SVHGWVVKEHGTQDSFLASALVDMYCKCGSI----------------------------- 414
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+LA +F K D+ WT MI+ + + ALD F K + GT + VT+ VLSA
Sbjct: 415 -KLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSA 473
Query: 242 CAHLGALDLG 251
C+H G D G
Sbjct: 474 CSHAGLFDEG 483
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I Y AE +F P D S M++ Y + +AL F G G
Sbjct: 167 NSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIG 226
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQ-IYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
DQ T +L+ C L LGR + + R +G + ++ L+ N++ + A
Sbjct: 227 VDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIG--------VADRGLILSNALLDMYAK 278
Query: 289 HGFAHEALGMFDR 301
G + A+ +FD
Sbjct: 279 CGEMNTAMRVFDE 291
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 32/195 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP +
Sbjct: 250 MISGYAMSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKN 305
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD------ 249
+ SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++
Sbjct: 306 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 365
Query: 250 -------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
LG I ++ C +GR+ +F+K+ + ++ W ++ A +G
Sbjct: 366 SFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCR 425
Query: 294 EALGMFDRMTYENVR 308
+AL +++ M E V+
Sbjct: 426 DALLVYNNMCREGVQ 440
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 71/250 (28%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSY-SNKFFESRRVSRRL 162
+ ++LRA LL VHGQ+ + GF S VFVQ A++D Y +R++
Sbjct: 114 FTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQV 173
Query: 163 FDE-------------------------------MPERKFATWNTMIDAYARLAEL---- 187
FDE MPER +WNT++ +AR+ ++
Sbjct: 174 FDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTAR 233
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F++MP+ + SW MI+ Y+ + A F++ + D V+ ++SA A +G
Sbjct: 234 AVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQ----KDVVSWTAMVSAYAKIG 289
Query: 247 ALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDR 301
LD + F + KNL+ WN++ I G+ H EAL F
Sbjct: 290 DLDTVNEL-------------FDHMPVKNLVSWNAM-----ITGYNHNSRYDEALRTFQL 331
Query: 302 MTYEN-VRPN 310
M E RP+
Sbjct: 332 MMLEGRFRPD 341
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 172 ATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A N +ID +A+ AE +F KM I +WTTMI+ ++ N R+AL +N +
Sbjct: 378 ALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCRE 437
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI 254
G D L+ACAH G L G I
Sbjct: 438 GVQLDDTVFIAALAACAHGGLLQEGWSI 465
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 166 MPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220
MP + TWNTMI AY++ A L+F +MP D+ SW+ M+ Y ++ L F
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 221 NK-TKKSGTGSDQVTMATVLSACAHLGALDL--GRGIQIY-------------------- 257
+ G D+VT+ +VLS CA +G+L L GR I +
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMY 120
Query: 258 --CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + VF ++EKN+ W ++ A HG+ EAL MF+ M V+PN
Sbjct: 121 AKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPN 175
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
++HG KNG+ V + T +VD Y+ F +S + R+FD M E+ A
Sbjct: 96 SIHGFTAKNGWELSVDLGTVLVDMYAKCG-FLKS---AFRVFDLMQEKNVA--------- 142
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
SWT +I +Q+ +EAL F + G +++T +LSA
Sbjct: 143 -----------------SWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSA 185
Query: 242 CAHLGALDLGR 252
CA G ++ GR
Sbjct: 186 CAQAGLVEEGR 196
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 68/298 (22%)
Query: 76 IDYTILVFPQMQEPNVFV--YHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133
ID + +F +M V V S L QA A + RA L +H V + GF
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFG 282
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY------ARLAEL 187
S V +++D Y+ + E+ +V F+ +P +WN +I + A+ E+
Sbjct: 283 SDQHVGNSLIDMYTKCVEMDEAVKV----FESLPSVTIVSWNILITGFGQEGSCAKAVEV 338
Query: 188 L----------------------------------FNKMPAWDIRSWTTMITSYSQNKQF 213
L F+K+ + +W T+++ Y Q +Q
Sbjct: 339 LSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQH 398
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
++ ++ F + + D+ T+A +LS+C+ LG LD GR +
Sbjct: 399 QDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGL 458
Query: 256 --IY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+Y C +G + +F K+ E++++CWNSI L IH EA F +M + P
Sbjct: 459 VDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 516
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 163 FDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNK-QFREA 216
F +P ++N + A R +L L MP + SW T+I++ +++ EA
Sbjct: 66 FRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEA 125
Query: 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR----------------------GI 254
++ + + + G T+A+VLSAC L AL GR G+
Sbjct: 126 VEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGM 185
Query: 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
C S+G ++ +F+ + N + + ++ LA G +AL +F RM V
Sbjct: 186 YTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGV 238
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 27/161 (16%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D Y++ ++ +FNKM D+ W ++I+ + + +EA D F + +++G
Sbjct: 458 LVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPT 517
Query: 232 QVTMATVLSACAHLGALDLGRGIQ-----------IY-----------CRSLGRSLLVFF 269
+ + A+++++C+ L ++ GR I +Y C ++ + L F
Sbjct: 518 ESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFD 577
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ KN++ WN + A +G +A+ +F+ M +P+
Sbjct: 578 TMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPD 618
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y + E+ +F +P+ I SW +IT + Q +A++ + +++G
Sbjct: 289 NSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFE 348
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
++VT + +L++C I R + + +F K+ ++ WN++
Sbjct: 349 PNEVTYSNLLASC-------------IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQE 395
Query: 290 GFAHEALGMFDRMTYENVRPN 310
+ + +F RM ++NV+P+
Sbjct: 396 EQHQDTIELFRRMQHQNVQPD 416
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 30/127 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H QV K+G+ V+V +A++D Y+ ++R
Sbjct: 540 IHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR-------------------------- 573
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L F+ M +I +W MI Y+QN +A++ F + D VT VL+ C
Sbjct: 574 ----LFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGC 629
Query: 243 AHLGALD 249
+H G +D
Sbjct: 630 SHSGLVD 636
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 45/266 (16%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131
+ Y +F PN+F+++ +S P+ AIA Y ++ L + + G
Sbjct: 17 VAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALY-----KDMFLCGISPNSYTFG 71
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AE 186
F +++ + E + + ++ + + N +I YA A
Sbjct: 72 F---------VLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYAC 122
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
++F++MP D SW+TM++ YSQN Q E L + + SD T+A+V+ C LG
Sbjct: 123 VMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLG 182
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
LDLG+ + Y C SL +L VF + E+++ W+ +
Sbjct: 183 VLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIA 242
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
AIHG +AL +FD M + PN
Sbjct: 243 GYAIHGHDEKALQLFDAMKRSKIIPN 268
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 45/303 (14%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78
P S +F + N K + E + +++ IVK + + L I + +DY
Sbjct: 65 PNSYTF---GFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKL-YAACGCMDY 120
Query: 79 TILVFPQMQEPNVFVYHAF-SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
++F +M EP+ + S QA+ L +LR ++ SS F
Sbjct: 121 ACVMFDEMPEPDSASWSTMVSGYSQNGQAVET-LKLLR----------EMQAENVSSDAF 169
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
++V + V + E + ++ Y++ L +F M
Sbjct: 170 TLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGM 229
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
D+ +W+ MI Y+ + +AL F+ K+S + VT +VLSA +H G ++ G
Sbjct: 230 AERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGH 289
Query: 253 GI---------------------QIYCRS--LGRSLLVFFKLR-EKNLLCWNSITEALAI 288
I ++CR+ +G + + E N++ W ++ A
Sbjct: 290 QIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKT 349
Query: 289 HGF 291
HG+
Sbjct: 350 HGY 352
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 33/227 (14%)
Query: 114 LRAEVLLTTVHGQVWKN-GFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
L+ VL +VHG V + G + + + A++D Y+ + + RV FDE ER
Sbjct: 125 LKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRV----FDEAGERDG 180
Query: 172 ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+WNTM+ +A LA F + PA DI SW ++ Y++ ++F + F+ S
Sbjct: 181 ISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLAS 240
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCR--SLGRS 264
D+VT T++SA A G L+ R + +YC+ S+ +
Sbjct: 241 SVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLA 300
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF K +K++ W ++ LA HG AL +F +M E PNG
Sbjct: 301 YAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNG 347
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 30/130 (23%)
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+VHG V K + F+ +A+VD Y
Sbjct: 267 SVHGWVVKEHGTQDSFLASALVDMYCKCGSI----------------------------- 297
Query: 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+LA +F K D+ WT MI+ + + ALD F K + GT + VT+ VLSA
Sbjct: 298 -KLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSA 356
Query: 242 CAHLGALDLG 251
C+H G D G
Sbjct: 357 CSHAGLFDEG 366
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I Y AE +F P D S M++ Y + +AL F G G
Sbjct: 50 NSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIG 109
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQ-IYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
DQ T +L+ C L LGR + + R +G + ++ L+ N++ + A
Sbjct: 110 VDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIG--------VADRGLILSNALLDMYAK 161
Query: 289 HGFAHEALGMFDR 301
G + A+ +FD
Sbjct: 162 CGEMNTAMRVFDE 174
>gi|359475755|ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 39/219 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H K GF V++ T +++ Y+ E+++V DEMP R TWN +I A
Sbjct: 154 LHALTLKAGFEFHVYLHTVLLNVYAVCGALLEAKQV----LDEMPVRNSVTWNVLITGLA 209
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQVTMA 236
+ EL LF++MP + SWTT+I Y++ Q ++AL F G ++ +
Sbjct: 210 KWGELHLARSLFDEMPMPTVVSWTTIIDGYTRMNQPKQALALFRTMFIDEGIKPTEIALL 269
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLG---------RSLL--------------VFFKL-- 271
+ A ++LGAL+L + + +Y G SLL VF ++
Sbjct: 270 AIFPAISNLGALELCQLVHMYGEKSGLNASDIRIRNSLLDTYAKCGCMESIXRVFGEIAA 329
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +NL+ W S+ A A+HG A EAL + E ++PN
Sbjct: 330 KSRNLVSWTSVISAFAMHGMAKEALEILK----ECLKPN 364
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL- 184
++ G ++ T++V + S+ + R V + N +I+ YA+
Sbjct: 387 EMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG 446
Query: 185 ----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
A L+F+K+P DI SW TMI YSQN EAL+ F +K D +TMA VL
Sbjct: 447 SVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLP 505
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
ACA L ALD GR I + C L + L+F + +K+L+
Sbjct: 506 ACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 565
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W + +HGF +EA+ F+ M + P+
Sbjct: 566 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD 597
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 27/212 (12%)
Query: 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185
++ K G + T ++ ++ K E +RV + A N++I AY +
Sbjct: 185 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 244
Query: 186 EL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
+ LF+++ D+ SW +MI N L+ F + G D T+ +VL
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304
Query: 241 ACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLC 278
ACA++G L LGR + + C +L + VF K+ + ++
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 364
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W SI A G +A+G+FD M + VRP+
Sbjct: 365 WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 27/155 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NT++D Y++ L +F KM I SWT++I +Y + + +A+ F++ + G
Sbjct: 335 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVR 394
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D T+ +++ ACA +LD GR + Y C S+ + LV
Sbjct: 395 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 454
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
F K+ K+++ WN++ + + +EAL +F M
Sbjct: 455 FSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM 489
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 30/129 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + + G+ S + V A+VD Y+
Sbjct: 519 IHGHILRRGYFSDLHVACALVDMYAKCGLLV----------------------------- 549
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LA+LLF+ +P D+ SWT MI Y + EA+ FN+ + +G D+ + + +L+AC
Sbjct: 550 -LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNAC 608
Query: 243 AHLGALDLG 251
+H G L+ G
Sbjct: 609 SHSGLLNEG 617
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + NG S + +V Y + R++ FD++ K WN ++ YA
Sbjct: 116 VHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKI----FDKIMNDKVFLWNLLMSEYA 171
Query: 183 RLAEL-----LFNKMPAWDI----RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
++ LF KM + ++T ++ ++ + +E K G GS+
Sbjct: 172 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 231
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
+ ++++A G ++ + F +L E +++ WNS+ ++GF+
Sbjct: 232 VVNSLIAAYFKFGGVESAHNL-------------FDELSEPDVVSWNSMINGCVVNGFSG 278
Query: 294 EALGMFDRM 302
L +F +M
Sbjct: 279 NGLEIFIQM 287
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R FD MPE+ +WNTM+ AYAR L LF++MP+ + +W +MIT Q+
Sbjct: 158 ARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHC 217
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------- 257
EAL F+ G ++ + + +SAC L ++ G + Y
Sbjct: 218 EEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATA 277
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++ VF + +N+ WNS+ LA++G +AL +F +M VRPN
Sbjct: 278 IVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPN 337
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D Y + + +F MP +I SW +MI + N R+AL F K + +G
Sbjct: 277 AIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRP 336
Query: 231 DQVTMATVLSACAHLGALDLGR----------GIQ-------IYCRSLGRSLLV-----F 268
+ +T +LSAC+H G +D GR GIQ + LGRS V F
Sbjct: 337 NDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDF 396
Query: 269 FKLR--EKNLLCWNSITEALAIHG 290
K E + W ++ A IHG
Sbjct: 397 VKSMPVEPHPGLWGALAGACKIHG 420
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 28/181 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+ LF+ MP+R +W+ MID YA+L ++ LF++MP D+ ++ T++ Y+QN +
Sbjct: 275 AHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYY 334
Query: 214 REALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALD---------LGRGIQIY------ 257
EAL+ F++ ++S D+ T+ LSA + LG ++ L GI +
Sbjct: 335 TEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVA 394
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ ++L+F + +K + WN++ +A +G A GM M +V+P+
Sbjct: 395 LIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPD 454
Query: 311 G 311
G
Sbjct: 455 G 455
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 31/193 (16%)
Query: 132 FSSPVFVQTAMVDNYSYS---NKFFESRRV--SRRLFDEMP--ERKFATWNTMIDAYAR- 183
F+ VF + + D+ SY+ + + +S + +R LFD MP ++ +WN+M+ +A+
Sbjct: 178 FARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQT 237
Query: 184 -----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
LA LF KMP D+ SW T+I +++ + A FN+ K D ++ + +
Sbjct: 238 KDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPK----RDVISWSNM 293
Query: 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298
+ A LG + + R + F ++ +K+++ +N+I A +G+ EAL +
Sbjct: 294 IDGYAKLGDIKVARTL-------------FDEMPDKDVVAFNTIMAGYAQNGYYTEALEI 340
Query: 299 FDRMTYE-NVRPN 310
F M + N+ P+
Sbjct: 341 FHEMQRQSNLSPD 353
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +I YA+ +L +F+ M A D+ +W +I+ Y+QN EA+ F+ K+
Sbjct: 257 SALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVT 316
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
+++T+ VLSACA +GALDLG+ I Y C SL + V
Sbjct: 317 ENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRV 376
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE--NVRPN 310
F ++ +KN WN++ ALA HG A EAL +F M+ E RPN
Sbjct: 377 FKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPN 421
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 173 TWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKS 226
T +++I Y+R A +F+++P D+ SW +MI Y++ REA++ F + ++
Sbjct: 153 TTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRD 212
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRS 264
G D++++ +VL AC LG L+LGR ++ + C LG +
Sbjct: 213 GFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSA 272
Query: 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+F + ++++ WN++ A +G A EA+ +F M + V N
Sbjct: 273 RRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTEN 318
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELL 188
+ GF +FV TA++D Y+ ++RV F EMP++ A+WN MI A A
Sbjct: 347 QRGFQHDIFVATALIDMYAKCGSLASAQRV----FKEMPQKNEASWNAMISALA------ 396
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS--DQVTMATVLSACAHLG 246
+ + +EAL F G G+ + +T +LSAC H G
Sbjct: 397 --------------------SHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAG 436
Query: 247 ALDLG 251
++ G
Sbjct: 437 LVNEG 441
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 154/385 (40%), Gaps = 115/385 (29%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
L K SSI EL+ + A I K+ + L + I F S F + + +F Q ++
Sbjct: 13 LNKLSSISELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLF---QHSSIL 69
Query: 93 VYH---------AFSSLRHPLQAIAFYLYML-------------------RAEVLL---- 120
+++ AFS PLQA+ Y ML RA L+
Sbjct: 70 IHNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQESG 129
Query: 121 --------------TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE- 165
T +H +V K GF + VQ +++ Y YS S V+R LFD+
Sbjct: 130 SCDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLL--YFYSQCGLVS--VARHLFDQI 185
Query: 166 ------------------------------MPERKFATWNTMIDAYARLAEL-----LFN 190
MP + +WNT+I Y RL ++ +F
Sbjct: 186 KDTSLVSWNIMISAYDLVNDYESADYLLELMPCKTVVSWNTLIARYIRLGDVQAARRVFG 245
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
MP + SW +MI + + AL+ F++ + +G +VT+ ++L ACA GAL++
Sbjct: 246 CMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEI 305
Query: 251 GRGI--------------------QIYCRSLGRSLL--VFFKLREKNLLCWNSITEALAI 288
G I +YC+ SL +F ++ K + CWN++ LA+
Sbjct: 306 GHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAV 365
Query: 289 HGFAHEALGMFDRMTYE---NVRPN 310
HG+ E +F M ++RP+
Sbjct: 366 HGYCEEVFQLFTEMEESLGGSIRPD 390
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 149 SNKFFESRRVSRRLFDEMPERKFATW--NTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
+K +ES +V E K ++ N +++ Y + L +FN M + W
Sbjct: 306 GHKIYESLKVC--------EHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWN 357
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGALDLGR 252
M+ + + E F + ++S GS D+VT VL AC+H G +D R
Sbjct: 358 AMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKAR 411
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 139/344 (40%), Gaps = 83/344 (24%)
Query: 17 SFPTSVSFIRIHIIANQL----KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-S 71
S PTS + ++++N L + C S +L+ + A ++ T LD F + + ISFC S
Sbjct: 39 SNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAIS 98
Query: 72 RFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLR------------ 115
+DY I + +Q PNVF ++A +P + + Y ML
Sbjct: 99 ESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYS 158
Query: 116 ------AEVLLT----TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165
A ++L+ + GQV K GF +++ ++ + ++ ++FDE
Sbjct: 159 FLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGE----SGLAHKVFDE 214
Query: 166 MPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
R +WN++I+ Y R +Q REA+ + +
Sbjct: 215 GCVRDLVSWNSLINGYVR--------------------------RRQPREAMGIYQQMIT 248
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
D+VTM V+SACA L +L LGR I Y C L
Sbjct: 249 EHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEA 308
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
++F +R+K ++ W ++ A +G A +F M +NV
Sbjct: 309 GKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNV 352
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + ++G + + + A++D Y E+ +V LFD M ++ +W TMI YA
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDL-EAGKV---LFDNMRKKTVVSWTTMIVGYA 332
Query: 183 R-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ +A LF+ MP ++ +W MI S Q EAL+ F + + S D+VTM
Sbjct: 333 KNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLH 392
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
LSAC+ LGALD G Y C ++ ++L VF ++ +N
Sbjct: 393 CLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRN 452
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L W +I LA++G ++A+ F +M + P+
Sbjct: 453 SLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPD 487
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
A +ID YA+ + +FN+MP + +WT +I + +A+ F+K S
Sbjct: 423 ALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDS 482
Query: 227 GTGSDQVTMATVLSACAHLGALDLGR 252
G D++T VL+AC H G ++ GR
Sbjct: 483 GLMPDEITFLGVLTACCHGGLVEEGR 508
>gi|242077724|ref|XP_002448798.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
gi|241939981|gb|EES13126.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
Length = 577
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 124/307 (40%), Gaps = 95/307 (30%)
Query: 89 PNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
P+ F Y H + A A L M RA VH +V K G ++ V ++++ Y
Sbjct: 114 PDSFTYP------HVVDACA-RLRMWRAA---EAVHCRVLKEGLAAVPAVSSSLLAFYVA 163
Query: 149 SNKFFESRRV---------------------------SRRLFDEMPERKFATWNTMIDAY 181
++RRV +R +FD M R +WN M+ AY
Sbjct: 164 RGSLGDARRVFDGFRDKSIGLSNRMVSVYVRAGDVTSAREVFDAMETRDVVSWNAMLTAY 223
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMI-------------------------------T 205
R A++ LF MP ++ SWTTMI +
Sbjct: 224 VRTADIVAAKELFAAMPVKNVISWTTMIRALSDAGDFAGMRGLFDRMPERNLVSWNCILS 283
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR---------GIQI 256
SY+++ +F +AL F + G D T+ +VLSAC +L L LGR +Q+
Sbjct: 284 SYTRHGRFWQALQMFPRMLLEGLNPDSFTVVSVLSACENLRKLRLGRWIHANLVTPALQV 343
Query: 257 Y-------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
+ C + R+ +VF K+ K++ WN + ALA+H A +AL +F M
Sbjct: 344 HAEVGTALVEMYAMCGDVARAFVVFLKMYSKDVFSWNVMIRALAVHRRADDALRLFGVMR 403
Query: 304 YENVRPN 310
+ PN
Sbjct: 404 KQGFGPN 410
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
++F KM + D+ SW MI + + +++ +AL F +K G G + T VL AC +
Sbjct: 366 VVFLKMYSKDVFSWNVMIRALAVHRRADDALRLFGVMRKQGFGPNHFTFMGVLLACRYGS 425
Query: 247 ALDLGR 252
+D GR
Sbjct: 426 LVDEGR 431
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG V +NG VFV +A+V+ Y+ S R ++ +FD M R +WN +I AY
Sbjct: 201 VHGFVVRNGMGGNVFVSSALVNMYASC----LSIRQAQLVFDSMSRRDTVSWNVLITAYF 256
Query: 183 RLAEL-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
E +F +M + + SW +I QN + +AL+ ++ + SG +Q+
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ +VL AC +L +L G+ I Y C L S VF +
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ + WN++ A ++HG EAL +F M VRPN
Sbjct: 377 TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPN 415
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y + A L+F MP D+ SWT+M + Y REAL AF K +G
Sbjct: 117 NALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGER 176
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
+ VT++++L AC L L GR + + C S+ ++ LV
Sbjct: 177 PNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLV 236
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + ++ + WN + A ++ + L +F RM E V N
Sbjct: 237 FDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLN 279
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACA 243
A LF+K+P D+ +WT +I++ +++ + EA+ +N + K+ D++ + +V ACA
Sbjct: 30 ARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACA 89
Query: 244 -----------HLGALDLG---------RGIQIY--CRSLGRSLLVFFKLREKNLLCWNS 281
H A+ G I +Y CR + LVF + ++++ W S
Sbjct: 90 SLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTS 149
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ G EALG F +M RPN
Sbjct: 150 MASCYVNCGLLREALGAFRKMGLNGERPN 178
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
+ T ++ YA+ +L +F+ M D SW TMI + S + EAL F +
Sbjct: 348 QDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREM 407
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
SG + VT VLS C+H +D G
Sbjct: 408 VDSGVRPNSVTFTGVLSGCSHSRLVDEG 435
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 39/191 (20%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+ R+FDE+P +WN ++D YA+ +L +F +MP D+ SW+ MI + +
Sbjct: 114 AHRVFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGCVKCGEH 173
Query: 214 REALDAFN-------KTKKSGTG---SDQVTMATVLSACAHLGALDLGRGIQ-------- 255
REAL F ++ + G G ++ VTM +VL ACA+LG L+ GR +
Sbjct: 174 REALALFEMMENAAARSVEDGGGGARANDVTMVSVLGACANLGDLERGRWVHRCLRERGF 233
Query: 256 --------------IYCRSLGRSLLVFF--KLREKNLLCWNSITEALAIHGFAHEALGMF 299
C ++ +L +F+ + ++L WN++ LA+HG A E++ +F
Sbjct: 234 PLNLKLATSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATESVEIF 293
Query: 300 DRMTYENVRPN 310
M V P+
Sbjct: 294 QEMQCAGVAPD 304
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 170 KFATWNTMIDAYARLAEL-----LFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNK 222
K AT +++D YA+ + +F +P + D+ W +I + + E+++ F +
Sbjct: 238 KLAT--SLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATESVEIFQE 295
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALD 249
+ +G D++T +LSAC H G +D
Sbjct: 296 MQCAGVAPDEITYLCLLSACVHGGLVD 322
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V +M+ YS S + E+ LF +MP + +WNTMI YA+ ++ +F
Sbjct: 359 VVCWNSMIAGYSRSGRMDEALN----LFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQ 414
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
M +I SW ++I + QN + +AL + K G DQ T A LSACA+L AL +
Sbjct: 415 AMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQV 474
Query: 251 GRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAI 288
G + Y C + + VF + +L+ WNS+ A+
Sbjct: 475 GNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYAL 534
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
+G+A++A F++M+ E V P+
Sbjct: 535 NGYANKAFKAFEQMSSERVVPD 556
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 27/169 (15%)
Query: 161 RLFDEMPERKFATWNTMI---DAYARLAEL--LFNKMPAWDIRSWTTMITSYSQNKQFRE 215
+LF+++P +W TM+ Y ++AE LF++MP+ ++ SW MI +Y Q+ Q E
Sbjct: 225 QLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDE 284
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI--QIYCRSL------------ 261
A+ F K D V+ T+++ +G LD R + Q+ C+ +
Sbjct: 285 AVKLFKKMPH----KDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQ 340
Query: 262 -GR---SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
GR + +F ++ +++CWNS+ + G EAL +F +M +N
Sbjct: 341 NGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKN 389
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 21/156 (13%)
Query: 157 RVSRRLFDEMPERKFATWNTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNK 211
R +R+LFD+M R +WNTMI Y A LF+ MP D SW MIT Y++
Sbjct: 65 RDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKG 124
Query: 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271
+ +A + D +++ A G + + VF ++
Sbjct: 125 KLEKARELLELVPDK---LDTACWNAMIAGYAKKGQFNDAKK-------------VFEQM 168
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K+L+ +NS+ +G H AL F+ MT NV
Sbjct: 169 PAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV 204
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 159 SRRLFDEMPER-KFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQ 212
+R L + +P++ A WN MI YA+ A+ +F +MPA D+ S+ +M+ Y+QN +
Sbjct: 129 ARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGK 188
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
AL F +++ ++ L ++ + DL Q+ F K+
Sbjct: 189 MHLALQFFESM------TERNVVSWNLMVAGYVKSGDLSSAWQL-----------FEKIP 231
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
N + W ++ LA +G EA +FDRM +NV
Sbjct: 232 NPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNV 266
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I YA+ AE +F + D+ SW ++I+ Y+ N +A AF +
Sbjct: 495 NALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVV 554
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D+VT +LSAC+H G + G I
Sbjct: 555 PDEVTFIGMLSACSHAGLANQGLDI 579
>gi|302810412|ref|XP_002986897.1| hypothetical protein SELMODRAFT_125114 [Selaginella moellendorffii]
gi|300145302|gb|EFJ11979.1| hypothetical protein SELMODRAFT_125114 [Selaginella moellendorffii]
Length = 377
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 38/222 (17%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA-- 180
+H ++ + S V V +A+V Y E+R FD +P R TWN M+ A
Sbjct: 32 LHERILEARMESNVRVASAIVSMYGRCGSIAEARAT----FDRLPNRNRVTWNGMLAAAL 87
Query: 181 ---YARLAEL-----LFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
YA+ EL +F++ P+W D +WT MI +Y++N +EA+ G +
Sbjct: 88 VTMYAKCGELHLAKKVFDECPSWNKDAIAWTAMILAYARNGHPKEAIKLLPLMDSQGIHT 147
Query: 231 DQVTMATVLSACAHLGALDLGR----------------------GIQIYCRSLGRSLLVF 268
D+VT +L AC + + LGR G+ C SL R+ +F
Sbjct: 148 DKVTFVNILDACGSITDVKLGRSLHKLLEEEQAEMDVHLGTSIVGMYGRCGSLDRAREIF 207
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+R+K+ WN+I + +G AL +F M + RP+
Sbjct: 208 HSMRDKDTFTWNTIIAVHSHNGDPRGALELFRLMELQGERPD 249
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
R + + L +E E +++ Y R L +F+ M D +W T+I +S
Sbjct: 168 GRSLHKLLEEEQAEMDVHLGTSIVGMYGRCGSLDRAREIFHSMRDKDTFTWNTIIAVHSH 227
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
N R AL+ F + G D++T VL+AC H G
Sbjct: 228 NGDPRGALELFRLMELQGERPDRLTCTCVLAACGHAG 264
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D Y + A+ +F+++ DI SWT++I+ Q +EAL+ F + SG
Sbjct: 171 NALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIE 230
Query: 230 SDQVTMATVLSACAHLGALDLGR-------------GIQI---------YCRSLGRSLLV 267
D + + +VLSACA LGALD GR IQI C + S+ +
Sbjct: 231 PDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQI 290
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F + KN+L WN++ LA+HG A++ L +F+ M +RPN
Sbjct: 291 FNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPN 333
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 55/211 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VHG + K GF ++V+ ++V YS +F ++ RV FDEM R
Sbjct: 56 VHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRV----FDEMLVR------------- 98
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D+ SWT +I+ Y + F EA+ F + + T +VL AC
Sbjct: 99 -------------DVVSWTGVISGYVRAGLFDEAVGLFLRMDVE---PNAATFVSVLVAC 142
Query: 243 AHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWN 280
G L +G+GI + C L + VF +L EK+++ W
Sbjct: 143 GRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWT 202
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
SI L EAL +F M + P+G
Sbjct: 203 SIISGLVQCNCPKEALELFQDMQSSGIEPDG 233
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 161 RLFDEMPERKFATWN-----TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQN 210
R E +RK W+ M+D YA+ + +FN MP ++ +W ++ + +
Sbjct: 253 RWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMH 312
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ L+ F + + G ++VT +L+AC H G ++ GR
Sbjct: 313 GHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGR 354
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFD+MP R WN MI AY + + LF +MP + SWTT+I Y + +
Sbjct: 139 ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKL 198
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG-------------------- 253
EA N+ DQ T A LS+CAHL AL +G+
Sbjct: 199 DEARQLLNQMPYRNK-PDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNAL 257
Query: 254 IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
I +Y C S+ + L+F + +++ WNS+ A A++G EAL +F +M E V P+
Sbjct: 258 ITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPD 316
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I YA+ AELLF + +D+ SW ++I +Y+ N REAL F+K + G
Sbjct: 255 NALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVA 314
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT +LSAC+H+G +D G
Sbjct: 315 PDEVTFVGILSACSHVGLIDQG 336
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 159 SRRLFDEMPER-KFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQ 212
+R LF+ +P + N M+ YA+ A LF+ MPA D+ SW +M+T Y++N +
Sbjct: 14 ARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGE 73
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
R L F + + D V+ ++ +G L+ S F K+
Sbjct: 74 MRLGLQFFEEMAE----RDVVSWNLMVDGFVEVGDLN-------------SSWEFFEKIP 116
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
N + W ++ A G EA +FD+M NV
Sbjct: 117 NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV 151
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 68/298 (22%)
Query: 76 IDYTILVFPQMQEPNVFV--YHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133
+D + +F +M V V S L QA A ++RA L +H + + GF
Sbjct: 222 VDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFG 281
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI------DAYARLAEL 187
S V +++D Y+ + E+ +V FD +P +WN +I +YA+ E+
Sbjct: 282 SDQHVGNSLIDMYTKCMQMDEAVKV----FDSLPNISTVSWNILITGFGQAGSYAKALEV 337
Query: 188 L----------------------------------FNKMPAWDIRSWTTMITSYSQNKQF 213
L F+K+ + +W T+++ Y Q +
Sbjct: 338 LNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELH 397
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------------ 255
++ ++ F + + D+ T+A +LS+C+ LG LDLG +
Sbjct: 398 QDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGL 457
Query: 256 --IY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
+Y C +G + ++F ++ E++++CWNS+ LAIH EA F +M + P
Sbjct: 458 VDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMP 515
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V G + F+ +V+ YS S ++ R F +P ++N + A R +
Sbjct: 34 VLAAGLGADTFLINRLVELYSVSGLPCDALRA----FRSLPRPNAYSYNAALSAARRAGD 89
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L L ++MP ++ SW T+I + +++++ EAL+ + + G T+A+VLSA
Sbjct: 90 LDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSA 149
Query: 242 CAHLGALDLGR----------------------GIQIYCRSLGRSLLVFFKLREKNLLCW 279
C + ALD GR G+ C + ++ +F + N + +
Sbjct: 150 CGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSF 209
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVR 308
++ L G +AL +F RM VR
Sbjct: 210 TAMMGGLVQAGSVDDALRLFARMCRSGVR 238
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
++D Y++ +A ++FN+M D+ W +MI+ + + EA D F + + +G
Sbjct: 457 LVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPT 516
Query: 232 QVTMATVLSACAHLGALDLGRGIQ-----------IY-----------CRSLGRSLLVFF 269
+ + A+++++CA L ++ GR I +Y C ++ + + F
Sbjct: 517 ESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFD 576
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ KN++ WN + A +GF +A+ +F+ M RP+G
Sbjct: 577 CMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDG 618
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 23/226 (10%)
Query: 34 LKKCSSIKELEC---VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
L CS + L+ V++ V+ + D F+A + S+ I ++F +M E +
Sbjct: 423 LSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDM-YSKCGQIGIARIIFNRMTERD 481
Query: 91 VFVYHAFSS--LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148
V +++ S H L AF + Q+ NG +M+++ +
Sbjct: 482 VVCWNSMISGLAIHSLNEEAFDFFK------------QMRGNGMMPTESSYASMINSCAR 529
Query: 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTM 203
+ + R++ ++ + ++ + +ID YA+ A + F+ M +I +W M
Sbjct: 530 LSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEM 589
Query: 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
I Y+QN +A+D F + D VT VL+ C+H G +D
Sbjct: 590 IHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVD 635
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+ LF++MP+R +W M+D YA+L E+ LF++MP D+ S M+ Y QN
Sbjct: 272 AHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHL 331
Query: 214 REALDAFNKT-KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------- 257
EAL+ F+ + D T+ LSA A LG D G + Y
Sbjct: 332 MEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVA 391
Query: 258 -------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C S+ +L VF + +K++ WN+I LAIHG A +F M V+P+
Sbjct: 392 LIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPD 451
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 92/193 (47%), Gaps = 29/193 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY- 181
+HG + + S VF+Q ++ Y ++R+LFD M +R ++N+MID Y
Sbjct: 144 IHGLLGRMEIGSDVFLQNCLMCLYLRCGCL----GIARQLFDRMMKRDSVSFNSMIDGYV 199
Query: 182 ----ARLAELLFNKMPAW--DIRSWTTMITSYSQNKQ-FREALDAFNKTKKSGTGSDQVT 234
+ A LF+ MP ++ SW +MI+ Y+++++ R A + F + K D ++
Sbjct: 200 KHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPK----RDLIS 255
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHE 294
+++ C + C + + +F ++ +++++ W ++ + A G
Sbjct: 256 WNSMIDGC-------------VKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDI 302
Query: 295 ALGMFDRMTYENV 307
A G+FD M +V
Sbjct: 303 ARGLFDEMPERDV 315
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-- 257
W +I S+S + REA FN ++G D+ + + VL AC+ LG + G+QI+
Sbjct: 90 WNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIK--EGMQIHGL 147
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C LG + +F ++ +++ + +NS+ + HG A
Sbjct: 148 LGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSA 207
Query: 296 LGMFDRMTYE 305
+FD M E
Sbjct: 208 RELFDVMPME 217
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 40/226 (17%)
Query: 119 LLTTVHGQVWKNG----FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
L + +H Q K+G SS V V A++ YS ++RRV FDEMP R ++
Sbjct: 140 LPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGDARRV----FDEMPARDVISF 195
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ ++ + + A ++F++MP D+ SWT MI++Y++ ++ +EAL F+
Sbjct: 196 SGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRPQEALALFDAMP---VQ 252
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
D+VTM +V+SAC LG L G + Y C SL + +
Sbjct: 253 PDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLTEARNL 312
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE--NVRPNG 311
F + ++L WN+ A A HG + +F RM + +V+P+G
Sbjct: 313 FDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKSVKPDG 358
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 54/203 (26%)
Query: 76 IDYTILVFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYM--------LRAEVLLTTV 123
+D +VF QM +V + A++ R P +A+A + M + + V T
Sbjct: 208 LDAARVVFDQMPHRDVVSWTAMISAYARARRPQEALALFDAMPVQPDEVTMLSVVSACTA 267
Query: 124 HGQ----------VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
G V NGF V ++ A++D Y+ E+R LFD M R A
Sbjct: 268 LGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLTEARN----LFDGMTVRSLA- 322
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--SD 231
SW T I++Y+ + + F++ G D
Sbjct: 323 -------------------------SWNTFISAYASHGDVESTVALFHRMLADGKSVKPD 357
Query: 232 QVTMATVLSACAHLGALDLGRGI 254
T+ VL+A AH G ++ GR +
Sbjct: 358 GTTLLAVLTAYAHKGFVEEGRAM 380
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 32/195 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP +
Sbjct: 151 MISGYATSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKN 206
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD------ 249
+ SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++
Sbjct: 207 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 266
Query: 250 -------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
LG I ++ C +GR+ +F+K+ + ++ W ++ A +G
Sbjct: 267 SFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCR 326
Query: 294 EALGMFDRMTYENVR 308
+AL +++ M E V+
Sbjct: 327 DALLVYNNMCREGVQ 341
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 73/252 (28%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNY---SYSNKFFESRRVSR 160
+ ++LRA LL HGQ+ + GF S VFVQ A++D Y +R
Sbjct: 13 FTFLLRACALLGLPRPCGCFHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGGGVGAAR 72
Query: 161 RLFDE-------------------------------MPERKFATWNTMIDAYARLAEL-- 187
++FDE MPER +WNT++ +AR+ ++
Sbjct: 73 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 132
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+F++MP+ + SW MI+ Y+ + A F++ + D V+ ++SA A
Sbjct: 133 AWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQ----KDVVSWTAMVSAYAK 188
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMF 299
+G LD + F + KNL+ WN++ I G+ H EAL F
Sbjct: 189 IGDLDTANEL-------------FDHMPVKNLVSWNAM-----ITGYNHNSRYDEALRTF 230
Query: 300 DRMTYEN-VRPN 310
M E RP+
Sbjct: 231 QLMMLEGRFRPD 242
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ +F KM I +WTTMI+ ++ N R+AL +N + G
Sbjct: 282 NALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQ 341
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D L+ACAH G L G I
Sbjct: 342 LDDTVFIAALAACAHGGLLQEGWSI 366
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 114 LRAEVLLTTVHGQVWK--NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
L+ +L +VHG V + + + + A++D Y+ + + RV F E E+
Sbjct: 231 LKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMRV----FGEAKEKDD 286
Query: 172 ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+WNTMI +A LA F P D+ SW T++ Y + ++F ++ FN S
Sbjct: 287 ISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAVMELFNDMLSS 346
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IYCRSLGRSL- 265
D+VT T++SA GAL+LG+ + +YC+ L
Sbjct: 347 RVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLASTLVDMYCKCGNVKLA 406
Query: 266 -LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF K +K++ W ++ LA HG EAL +F M E V PNG
Sbjct: 407 YAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNG 453
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+T++D Y +LA +F K D+ WT MI+ + + EALD F + G
Sbjct: 391 STLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVA 450
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT+ TVLSAC+H G LD G
Sbjct: 451 PNGVTLVTVLSACSHAGLLDEG 472
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 36/155 (23%)
Query: 175 NTMIDAY-----ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++I Y A AE +F +P D+ S M++ Y + AL F G
Sbjct: 156 NSLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIG 215
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQ------------------------IYCRSLGRSL 265
DQ +LS C L LGR + C + ++
Sbjct: 216 VDQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAM 275
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
VF + +EK+ + WN++ I GFA++ GM D
Sbjct: 276 RVFGEAKEKDDISWNTM-----IAGFAND--GMLD 303
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 22/142 (15%)
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++A LFNKMP +I SW +MI +Y+Q ++ +EALD F SG D+ T +VLS C
Sbjct: 253 KIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVC 312
Query: 243 AHLGALDLGRGIQIYCR----------------------SLGRSLLVFFKLREKNLLCWN 280
AHL AL LG+ + Y LG + +F L++++++ W
Sbjct: 313 AHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWT 372
Query: 281 SITEALAIHGFAHEALGMFDRM 302
S+ LA+HG +EALGMF M
Sbjct: 373 SMINGLAMHGDGNEALGMFQTM 394
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 117/294 (39%), Gaps = 37/294 (12%)
Query: 24 FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILV 82
I + I + L +C S++EL+ + I+ + I FC S F I+ LV
Sbjct: 1 MIHQNTILSLLARCKSMRELKKLRGLILS-----------KLIDFCVDSXFGDINNADLV 49
Query: 83 FPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
F Q+ P+V++++ F + +P ++ Y Q+ +NG+S F
Sbjct: 50 FRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYR--------------QLIENGYSPDHFT 95
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP 193
++ + + + E T ++ Y A++ +F+ +P
Sbjct: 96 FPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIP 155
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
W++ +WT +I Y N Q EAL F G +++TM L CA D G+
Sbjct: 156 IWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQW 215
Query: 254 IQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ + R G F N++ +I E A G A +F++M N+
Sbjct: 216 VHQHIRKAGYD--PFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNI 267
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A+L+F ++ A + W +MI + N R ++ + + ++G D T VL AC
Sbjct: 46 ADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCA 105
Query: 245 LGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWNSI 282
+ D G+ I + C + L VF + N++ W +
Sbjct: 106 IADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCL 165
Query: 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310
+ +EAL +F M++ V PN
Sbjct: 166 IAGYVNNNQPYEALKVFKDMSHCGVEPN 193
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L A L TVH + K G + + + TA++D Y+ + ++++
Sbjct: 315 LCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKI--------------- 359
Query: 174 WNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT-KKSGTGSDQ 232
F+ + D+ WT+MI + + EAL F + S D
Sbjct: 360 ---------------FSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDH 404
Query: 233 VTMATVLSACAHLGALD 249
+T VL AC+H+G ++
Sbjct: 405 ITYIGVLFACSHVGLVE 421
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 144/327 (44%), Gaps = 62/327 (18%)
Query: 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTIL------ 81
H L+KC ++ L+ V+A ++ T F ++ SR I TI+
Sbjct: 10 HPTLQLLEKCKTLDTLKQVHAHMITTGL--------IFHTYPLSRILLISSTIVFTHALS 61
Query: 82 VFPQMQEPNVFVYHAF-SSLRH--PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138
+F + P +F+Y+ SSL + P IAF LY + VL H + NGF+ P
Sbjct: 62 IFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLY---SRVL---THTTLKPNGFTFPSLF 115
Query: 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMP 193
+ + + + + F E F +++ YA+ ++ LFN++
Sbjct: 116 KACGSQPWLRHGRALHTHVLK---FLEPTCDPFVQ-AALLNYYAKCGKVGACRYLFNQIS 171
Query: 194 AWDIRSWTTMITSYSQNKQF--------REALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
D+ SW +++++Y N E L F + +KS +++VT+ ++SACA L
Sbjct: 172 KPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAEL 231
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GAL G +Y C L + +F +L ++ LC+N++
Sbjct: 232 GALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMI 291
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
AIHG+ H+AL +F +MT E + P+
Sbjct: 292 GGFAIHGYGHQALDLFKKMTLEGLAPD 318
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 177 MIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID Y++ LA LF+++P D + MI ++ + +ALD F K G D
Sbjct: 259 LIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPD 318
Query: 232 QVTMATVLSACAHLGALDLG 251
VT+ + +C+H+G ++ G
Sbjct: 319 DVTLVVTMCSCSHVGLVEEG 338
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 33/203 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V + AM+D + S +RR LFDEM + TW TMI Y + ++ LF+
Sbjct: 176 VVIYNAMMDGFVKSGDMTSARR----LFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFD 231
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD 249
MP ++ SW TMI Y QNKQ +E + F + + + + D VT+ +VL A + GAL
Sbjct: 232 AMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALS 291
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG + C + ++ +F ++ EK + WN++ A
Sbjct: 292 LGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYA 351
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
++G A AL +F M E +P+
Sbjct: 352 LNGNARAALDLFVTMMIEE-KPD 373
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 43/188 (22%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V + V V TA++D YS + +++R+ FDEMPE++ A+WN MI YA
Sbjct: 297 HCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRI----FDEMPEKQVASWNAMIHGYAL 352
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N R ALD F T D++TM V++AC
Sbjct: 353 --------------------------NGNARAALDLF-VTMMIEEKPDEITMLAVITACN 385
Query: 244 HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
H G ++ GR R +G + + + + + L G EA + M
Sbjct: 386 HGGLVEEGRKWFHVMREMGLNAKIEH---------YGCMVDLLGRAGSLKEAEDLITNMP 436
Query: 304 YENVRPNG 311
+E PNG
Sbjct: 437 FE---PNG 441
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 35/202 (17%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA---RLAEL--LFNKM 192
V A++ Y+ ++ E+RRV FD+MP R +WN ++ Y R+ E +F++M
Sbjct: 328 VNNALITFYTKYDRMIEARRV----FDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEM 383
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
P ++ +WT MI+ +QN E L FN+ K G A ++AC+ LG+LD G+
Sbjct: 384 PERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQ 443
Query: 253 GIQIYCR----------SLGRSLL--------------VFFKLREKNLLCWNSITEALAI 288
QI+ + S G +L+ VF + + + WN++ ALA
Sbjct: 444 --QIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQ 501
Query: 289 HGFAHEALGMFDRMTYENVRPN 310
HG +A+ +F++M E++ P+
Sbjct: 502 HGHGVKAIELFEQMMKEDILPD 523
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 70/220 (31%)
Query: 159 SRRLFDEMPERKF--ATWNTMIDAYAR------LAELLFNKMPAWDIRSWTTMITSYSQN 210
+R++FDE P+ + +W TMI Y R ELL D+ +W MI+ Y +
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDV-AWNAMISGYVRR 261
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACA----HLGALDLGRGIQIY--------- 257
+ EA D F + G D+ T +++SAC +G + GR + Y
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPS 321
Query: 258 ---CRSLGRSLLVFF--------------------------------------------- 269
S+ +L+ F+
Sbjct: 322 HHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFS 381
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
++ E+N+L W + LA +GF E L +F++M E + P
Sbjct: 382 EMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEP 421
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176
+++ VH + +GF F+ +++ Y S+ +R+LFD++P+ T
Sbjct: 21 QIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNI----TYARKLFDKIPKPDIVARTT 76
Query: 177 MIDAYA-----RLAELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++ AY+ +LA+ LFN P D S+ MIT+YS AL+ F + K+ G
Sbjct: 77 LLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFL 136
Query: 230 SDQVTMATVLSA 241
D T ++VLSA
Sbjct: 137 PDPFTFSSVLSA 148
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 168 ERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+ + N +I Y+R AE +F MP D SW MI + +Q+ +A++ F +
Sbjct: 455 DSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQ 514
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGR 252
K D++T T+L+AC H G + GR
Sbjct: 515 MMKEDILPDRITFLTILTACNHAGLIKEGR 544
>gi|302803426|ref|XP_002983466.1| hypothetical protein SELMODRAFT_118492 [Selaginella moellendorffii]
gi|300148709|gb|EFJ15367.1| hypothetical protein SELMODRAFT_118492 [Selaginella moellendorffii]
Length = 478
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 139/341 (40%), Gaps = 63/341 (18%)
Query: 29 IIANQLKKCS---SIKELECVYATIVKTNANLDCFLAKQFISF---CTSRFHFIDYTILV 82
+ A+ L++C +I E V+A IVK + D +A I C H + L
Sbjct: 29 VYASLLRRCGDAGAIAEGRRVHAHIVKHGFDRDILVANSIIQMYGSCGCNGHLQESRALF 88
Query: 83 FPQMQEPNV----------------FVYHAFSSLRHP--LQAIAFYLYMLRAEVLLTT-- 122
+ +V H F + H L + ++ L A LT
Sbjct: 89 DSMVDRSSVSWNAMISAYAQSAQFEAALHLFRLMNHDGCLPDRSTFVNALGACCELTALQ 148
Query: 123 ----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
+H Q+ ++G V TA+++ + +R V FD M ER +W MI
Sbjct: 149 FGRMIHAQIAESGLERECMVATALINLHGKCGNLEGARAV----FDLMEERTIISWTAMI 204
Query: 179 DAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN--KTKKSGTGSD 231
AY++ LA F++MP W + S T+I++YS+ + REAL F ++ SG +
Sbjct: 205 TAYSQNGQIVLARQFFDRMPHWCVISGNTLISAYSRGRNLREALRVFGAMESPSSGLVPN 264
Query: 232 QVTMATVLSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFF 269
+ + VL +C LGAL GR I++Y C S+ ++ V
Sbjct: 265 EHSYMAVLESCGKLGALAEGREIHARIAKRGFDACDLVAASLIEMYGRCGSVDEAVAVLD 324
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ R W++ AL +G ALG+ RM + + +
Sbjct: 325 QTRSLGRSVWSAAICALGQNGIGGAALGLLQRMQLQGIEVD 365
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HGQV GF S V + +++D Y+ + ES ++R FDEM + W T+I YA+
Sbjct: 202 HGQVLVAGFLSNVVLSCSIIDAYAKCGQM-ES---AKRCFDEMTVKDIHIWTTLISGYAK 257
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L ++ LF +MP + SWT +I Y + ALD F K +Q T ++
Sbjct: 258 LGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSC 317
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK-N 275
L A A + +L G+ I Y SL S VF +K +
Sbjct: 318 LCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQD 377
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ ALA HG H+AL M D M V PN
Sbjct: 378 CVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPN 412
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 19/191 (9%)
Query: 123 VHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H + GF P + ++ Y K ++ +V FD+M R +WN M+ +
Sbjct: 68 IHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKV----FDQMHLRNLYSWNNMVSGF 123
Query: 182 AR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ A ++F+ MP D+ SW TM+ Y+Q+ EAL F + ++SG ++ + A
Sbjct: 124 VKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFA 183
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+L+AC R +Q+ ++ G+ L+ F N++ SI +A A G A
Sbjct: 184 GLLTACVK------SRQLQLNQQAHGQVLVAGFL---SNVVLSCSIIDAYAKCGQMESAK 234
Query: 297 GMFDRMTYENV 307
FD MT +++
Sbjct: 235 RCFDEMTVKDI 245
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 39/276 (14%)
Query: 72 RFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVL-LTTVHGQ 126
R H D +F +M E ++F ++ + R A A + M +++ +
Sbjct: 7 RNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSG 66
Query: 127 VWKNGF---SSPVFVQTAMVDNYSYSN---KFFESRRV--SRRLFDEMPERKFATWNTMI 178
+NGF + +F + + + S++ + ++ R+ ++RLF+ + +WN ++
Sbjct: 67 YAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLM 126
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+ R LF+ MP D SW+ MI YSQN EAL F + ++ ++ +
Sbjct: 127 GGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCA 186
Query: 239 LSACAHLGALDLGRGIQIYCR----------SLGRSLLVFF--------------KLREK 274
LS C+++ AL+LGR Q++CR +G +LL + ++ EK
Sbjct: 187 LSTCSNIAALELGR--QLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEK 244
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+++ WN++ A HGF EAL +F+ M +RP+
Sbjct: 245 DVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPD 280
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 32/190 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y ++KF ++R LFD+MPER +WN M+ Y R +L LF +MP D
Sbjct: 1 MISGYLRNHKF----DLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERD 56
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
I SW M++ Y+QN EA + F K K+G ++ +L+A G ++ + +
Sbjct: 57 IVSWNAMLSGYAQNGFVDEAREIFYKMPLKNG-----ISWNGLLAAYVQNGRIEDAK--R 109
Query: 256 IYCRSLGRSLL---------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
++ + +L+ +F + +++ + W+++ + +G + EAL F
Sbjct: 110 LFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFV 169
Query: 301 RMTYENVRPN 310
M + R N
Sbjct: 170 EMQRDCERLN 179
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 189 FNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248
F ++ D+ SW TMI Y+++ EAL F K +G D TM +VL+AC+H G +
Sbjct: 238 FQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLV 297
Query: 249 DLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
D G Y S+ R + K L+ + + + L G EA + M +E
Sbjct: 298 DQG---SEYFYSMNRDYGITAK-----LVHYTCMVDLLGRAGQLEEAQNLMKNMPFE 346
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 53/274 (19%)
Query: 72 RFHFIDYTILVFPQMQEPNVF--------VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV 123
RF +D +F +M++ NV + A + A Y +++ +V + T
Sbjct: 192 RFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDT- 250
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
+ TA+V Y+ + ++ F +M R M+ Y++
Sbjct: 251 -------------HLLTALVTMYAGAG----CMDMAMEFFRKMSVRNLFVSTAMVSGYSK 293
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L +F++ D+ WTTMI++Y+++ +EAL F + SG D VTM +V
Sbjct: 294 AGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSV 353
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNL 276
+SAC +LG LD + + Y C L + VF K+ +N+
Sbjct: 354 ISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNV 413
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+S+ A A+HG A ++L +F +M ENV PN
Sbjct: 414 VSWSSMINAFAMHGEASDSLSLFAQMKQENVEPN 447
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG +K S FV+T ++D Y+ + +R +FDEM +R TWNTMI+ Y
Sbjct: 136 LHGFAFKIATLSDPFVETGLMDMYAACGRI----NYARNVFDEMSQRDVVTWNTMIERYC 191
Query: 183 RLAEL-----LFNKMPAWDIRS----WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
R L LF +M ++ ++++ + R ++ ++ D
Sbjct: 192 RFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTH 251
Query: 234 TMATVLSACAHLGALDLG----RGIQI------------YCRS--LGRSLLVFFKLREKN 275
+ +++ A G +D+ R + + Y ++ L + ++F + K+
Sbjct: 252 LLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKD 311
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+CW ++ A A EAL +F+ M ++P+
Sbjct: 312 LVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPD 346
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ YA+ L +F KMP ++ SW++MI +++ + + ++L F + K+
Sbjct: 386 NALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVE 445
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
++VT VL C+H G ++ G+ I
Sbjct: 446 PNEVTFVGVLYGCSHSGLVEEGKKI 470
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 27/177 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
+LFD MP+R T+NTMI R A +F++MPA D SWT +I +N + E
Sbjct: 127 KLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDE 186
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------------------ 257
A+D F+ + G D VT+ +SACA +GAL LG + +
Sbjct: 187 AIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLID 246
Query: 258 ----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C + + VF ++R++ ++ WNS+ A +G +A+ F+ M E +P+
Sbjct: 247 MYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPD 303
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 158 VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQ 212
V R + D+ E N++ID YAR ++ +F ++ + SW +MI ++ N Q
Sbjct: 225 VHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQ 284
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+ +A++ F ++ G D VT VL+AC+H G D G
Sbjct: 285 YADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEG 323
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 131/306 (42%), Gaps = 39/306 (12%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTILVFPQMQEPNVF 92
LK+C S++E + V+A I+K D F ++ C SR+ ++Y +F Q++EP F
Sbjct: 37 LKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSF 96
Query: 93 VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152
Y+ +R + ++ E LL V ++ + G F ++ S
Sbjct: 97 EYNTM--IRGNVNSMNL------EEALLLYV--EMLERGIEPDNFTYPFVLKACSLLGAL 146
Query: 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207
E ++ +F E N +I+ Y + A ++F +M + SW+++I ++
Sbjct: 147 KEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAH 206
Query: 208 SQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQ----------- 255
+ + + E L G +++ + + LSAC HLG+ + GR I
Sbjct: 207 ASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELN 266
Query: 256 -----------IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
+ SL + L VF + +KN + I LAIHG EAL +F M
Sbjct: 267 VAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLE 326
Query: 305 ENVRPN 310
E + P+
Sbjct: 327 EGLAPD 332
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 34 LKKCS---SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK CS ++KE ++A + K D F+ I+ + I++ +VF QM E +
Sbjct: 137 LKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINM-YGKCGAIEHASVVFEQMDEKS 195
Query: 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN 150
V ++SS+ ++ + L +LL + G+ ++ + V + S
Sbjct: 196 VA---SWSSIIGAHASVEMWHECL---MLLGDMSGE-GRHRAEESILVSALSACTHLGSP 248
Query: 151 KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMIT 205
F R + L + E A ++ID Y + L +F M + S+T +IT
Sbjct: 249 NF--GRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIIT 306
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259
+ + + REAL F+ + G D V VLSAC+H G ++ G+Q + R
Sbjct: 307 GLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVN--EGLQCFNR 358
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 52/211 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + + G VFV T++VD Y+ ++R V FD MPE+ +W MI YA
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSV----FDGMPEKDIVSWGAMIQGYA 290
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
N +P +EA+D F + ++ D T+ VLSAC
Sbjct: 291 ------LNGLP--------------------KEAIDLFLQMQRENVKPDCYTVVGVLSAC 324
Query: 243 AHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNLLCWN 280
A LGAL+LG I +Y C S+ R+ VF ++EK+ + WN
Sbjct: 325 ARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWN 384
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+I LA++G+ + G+F ++ ++P+G
Sbjct: 385 AIISGLAMNGYVKISFGLFGQVEKLGIKPDG 415
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 79/290 (27%)
Query: 69 CTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT-- 122
C+ F +YT +F Q+++PN+F+++ S AI FY ++R+E L
Sbjct: 55 CSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFY-GLMRSEGFLPNNF 113
Query: 123 --------------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRL 162
+H V K GF VFV+T++V Y+ ++ +V
Sbjct: 114 TFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV---- 169
Query: 163 FDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
FD++P++ ++ SWT +I+ Y +FREA+D F +
Sbjct: 170 FDDIPDK--------------------------NVVSWTAIISGYIGVGKFREAIDMFRR 203
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IY--CRS 260
+ D T+ VLSAC LG L+ G I +Y C +
Sbjct: 204 LLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGN 263
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ ++ VF + EK+++ W ++ + A++G EA+ +F +M ENV+P+
Sbjct: 264 MEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPD 313
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 33/203 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V + AM+D + S +RR LFDEM + TW TMI Y + ++ LF+
Sbjct: 176 VVIYNAMMDGFVKSGDMTSARR----LFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFD 231
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD 249
MP ++ SW TMI Y QNKQ +E + F + + + + D VT+ +VL A + GAL
Sbjct: 232 AMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALS 291
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG + C + ++ +F ++ EK + WN++ A
Sbjct: 292 LGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYA 351
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
++G A AL +F M E +P+
Sbjct: 352 LNGNARAALDLFVTMMIEE-KPD 373
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 43/188 (22%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V + V V TA++D YS + +++R+ FDEMPE++ A+WN MI YA
Sbjct: 297 HCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRI----FDEMPEKQVASWNAMIHGYAL 352
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N R ALD F T D++TM V++AC
Sbjct: 353 --------------------------NGNARAALDLF-VTMMIEEKPDEITMLAVITACN 385
Query: 244 HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
H G ++ GR R +G + + + + + L G EA + M
Sbjct: 386 HGGLVEEGRKWFHVMREMGLNAKIEH---------YGCMVDLLGRAGSLKEAEDLITNMP 436
Query: 304 YENVRPNG 311
+E PNG
Sbjct: 437 FE---PNG 441
>gi|242040141|ref|XP_002467465.1| hypothetical protein SORBIDRAFT_01g028590 [Sorghum bicolor]
gi|241921319|gb|EER94463.1| hypothetical protein SORBIDRAFT_01g028590 [Sorghum bicolor]
Length = 529
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 33/216 (15%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HG + GF S V + ++++D Y + ++R LFDEM + W T++ A A
Sbjct: 216 HGHLMVLGFLSDVNIASSLLDVYRKCHCVDDARN----LFDEMHIKDVHMWTTVVCACAE 271
Query: 184 LAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
+L LF++MP + SW +I Y + Q +AL F + G DQ+T+
Sbjct: 272 DGQLTIARQLFDQMPERNAFSWNALIEGYVCHGQPMDALSMFQHLMEEGLQPDQITLGCC 331
Query: 239 LSACAHLGALDLGRGIQ--------------------IY--CRSLGRSLLVF-FKLRE-K 274
LSACA + +L LG+ I +Y C L ++ VF RE K
Sbjct: 332 LSACAAMRSLKLGQQIHGMLLRCGFDQSVMIISSIIDMYSECSFLSGAIEVFSLTGRERK 391
Query: 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
N + WN + AL HG +A+G+F +M +E +P+
Sbjct: 392 NAVLWNGMLSALCRHGHGQDAIGLFVQMIHERQKPD 427
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----A 185
G V T + D N R +RRLF +MP ++N M+ YARL A
Sbjct: 85 GLKRLVPCSTQLADRLLSLNFLLGRPRDARRLFTKMPRPSVHSYNAMLTGYARLALAGPA 144
Query: 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
+F MP ++ S+ ++ + + + R A++ +++ +
Sbjct: 145 SEVFASMPHRELVSYNAVMLALGRGGEARGAVELYSELRN 184
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 135/333 (40%), Gaps = 80/333 (24%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQ 87
+I L+ C+S+ +L +++ ++ + + + FC + + Y L+F +
Sbjct: 7 VIVRMLQGCNSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFD 66
Query: 88 -EPNV----FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV------------------- 123
+P+ ++ FS PL I +Y ML + V +
Sbjct: 67 SDPSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKC 126
Query: 124 ---HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
HG V ++GF + V T +V YS + S ++ ++FDEMP R
Sbjct: 127 LELHGSVIRSGFLADAIVSTNLVRCYSANG----SVEIASKVFDEMPVR----------- 171
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
D+ SW MI+ +S +A +++ G D T+ +LS
Sbjct: 172 ---------------DLVSWNAMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLS 216
Query: 241 ACAHLGALDLG--------------------RGIQIY--CRSLGRSLLVFFKLREKNLLC 278
+CAH+ AL++G I +Y C SL ++ VF +R++++L
Sbjct: 217 SCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLT 276
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
WNS+ +HG EA+ F +M VRPN
Sbjct: 277 WNSMIIGYGVHGHGVEAISFFRKMVASGVRPNA 309
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 23/242 (9%)
Query: 20 TSVSFIRIHIIANQLKKCSSIKEL-ECV--YATIVKTNANLDCFLAKQFISFCTSRFHFI 76
+SVS I + LK C I+ + +C+ + +++++ D ++ + C S +
Sbjct: 100 SSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSGFLADAIVSTNLVR-CYSANGSV 158
Query: 77 DYTILVFPQMQEPNVFVYHA-FSSLRHP-LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS 134
+ VF +M ++ ++A S H L AF +Y ++ G
Sbjct: 159 EIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMY------------SRMANEGVCV 206
Query: 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LF 189
+ A++ + ++ + + R D E N +ID YA+ L +F
Sbjct: 207 DAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCGSLENAVGVF 266
Query: 190 NKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249
M D+ +W +MI Y + EA+ F K SG + VT +L C+H G +
Sbjct: 267 KGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAVTFLGLLLGCSHQGLVK 326
Query: 250 LG 251
G
Sbjct: 327 EG 328
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 144/344 (41%), Gaps = 83/344 (24%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFIS-FCTSR 72
++N P +V H A L++CSS+KEL + I K + + +S FC R
Sbjct: 27 QRNYIPANVYE---HPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFC--R 81
Query: 73 FHFIDYTILVF-PQMQEPNVFVY---HAFSSLRHPLQAIAFYLYMLRAEV---------L 119
+ +D VF P ++ NV Y F+ + +A+ F++ M EV L
Sbjct: 82 YGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYL 141
Query: 120 LTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167
L +HG + K+GFS +F T + + Y+ + E+R+V FD MP
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKV----FDRMP 197
Query: 168 ERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
ER D+ SW T++ YSQN R AL+ N +
Sbjct: 198 ER--------------------------DLVSWNTIVAGYSQNGMARMALEMVNLMCEEN 231
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265
+T+ +VL A + L + +G+ I Y C SL +
Sbjct: 232 LKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTAR 291
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309
L+F + E+N++ WNS+ +A + EA+ +F +M E V+P
Sbjct: 292 LLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKP 335
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 52/210 (24%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + GF S V + TA+VD Y+ S + +R LFD M ER
Sbjct: 258 IHGYAMRAGFDSLVNIATALVDMYAKCG----SLKTARLLFDGMLER------------- 300
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
++ SW +MI +Y QN+ +EA+ F K G V++ L AC
Sbjct: 301 -------------NVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHAC 347
Query: 243 AHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWN 280
A LG L+ GR I C+ + + +F KL+ + ++ WN
Sbjct: 348 ADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWN 407
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ A +G EAL F +M V+P+
Sbjct: 408 AMILGFAQNGRPIEALNYFSQMQARTVKPD 437
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
+R + N++I Y + E+ +F K+ + I SW MI ++QN + EAL+ F++
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQ 428
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ--------------------IY--CRS 260
+ D T +V++A A L + I +Y C +
Sbjct: 429 MQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGA 488
Query: 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ + L+F + E+++ WN++ + HG AL +F+ M +RPNG
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNG 539
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 67/262 (25%)
Query: 19 PTSVSFIRIHIIANQLKKCSSIKELE---CVYATIVKTNANLDCFLAKQFIS-FCTSRFH 74
PT VS + L C+ + +LE ++ V+ + + + IS +C +
Sbjct: 335 PTDVS------VMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE- 387
Query: 75 FIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR--------------- 115
+D +F ++Q + ++A F+ P++A+ ++ M
Sbjct: 388 -VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446
Query: 116 --AEVLLTT----VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
AE+ +T +HG V +N VFV TA+VD Y+ ++R +FD M ER
Sbjct: 447 AIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIM----IARLIFDMMSER 502
Query: 170 KFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
T W MI Y + + AL+ F + +K
Sbjct: 503 HVTT--------------------------WNAMIDGYGTHGIGKAALELFEEMQKGTIR 536
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT +V+SAC+H G ++ G
Sbjct: 537 PNGVTFLSVISACSHSGLVEAG 558
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 26/193 (13%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
++KNG QT +V + E+ RV F+ + ++ + TM+ +A++++
Sbjct: 60 IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARV----FEPIDKKLNVLYYTMLKGFAKVSD 115
Query: 187 L-----LFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
L F +M ++ ++T ++ + R + KSG D M
Sbjct: 116 LDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG 175
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+ + A CR + + VF ++ E++L+ WN+I + +G A AL
Sbjct: 176 LENMYAK-------------CRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222
Query: 298 MFDRMTYENVRPN 310
M + M EN++P+
Sbjct: 223 MVNLMCEENLKPS 235
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
+ A + + HG + G ++ VQ+ ++ Y+ SR F E+
Sbjct: 127 VNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAA----FAEIACPDVVC 182
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
M+ A A ++ LF+ MP D +W+ MI Y + REAL F++ +GT
Sbjct: 183 VTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGT 242
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIYCRS--------LGRSLL-------------- 266
+ T+ +VL+ACA +G LD G+ + Y RS LG +L+
Sbjct: 243 TVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAME 302
Query: 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
VF + E+N+ W S LA++G E L +F RM ++PNG
Sbjct: 303 VFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNG 347
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 32/195 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP +
Sbjct: 250 MISGYAMSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKN 305
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD------ 249
+ SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++
Sbjct: 306 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 365
Query: 250 -------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
LG I ++ C +GR+ +F+K+ + ++ W ++ A +G
Sbjct: 366 SFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCR 425
Query: 294 EALGMFDRMTYENVR 308
+AL +++ M E V+
Sbjct: 426 DALLVYNNMCREGVQ 440
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 71/250 (28%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSY-SNKFFESRRVSRRL 162
+ ++LRA LL VHGQ+ + GF S VFVQ A++D Y +R++
Sbjct: 114 FTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQV 173
Query: 163 FDE-------------------------------MPERKFATWNTMIDAYARLAEL---- 187
FDE MPER +WNT++ +AR+ ++
Sbjct: 174 FDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTAR 233
Query: 188 -LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F++MP+ + SW MI+ Y+ + A F++ + D V+ ++SA A +G
Sbjct: 234 AVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQ----KDVVSWTAMVSAYAKIG 289
Query: 247 ALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH-----EALGMFDR 301
LD + F + KNL+ WN++ I G+ H EAL F
Sbjct: 290 DLDTVNEL-------------FDHMPVKNLVSWNAM-----ITGYNHNSRYDEALRTFQL 331
Query: 302 MTYEN-VRPN 310
M E RP+
Sbjct: 332 MMLEGRFRPD 341
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ AE +F KM I +WTTMI+ ++ N R+AL +N + G
Sbjct: 381 NALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQ 440
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D L+ACAH G L G I
Sbjct: 441 LDDTVFIAALAACAHGGLLQEGWSI 465
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 32/195 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP +
Sbjct: 252 MISGYATSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKN 307
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD------ 249
+ SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++
Sbjct: 308 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 367
Query: 250 -------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
LG I ++ C +GR+ +F+K+ + ++ W ++ A +G
Sbjct: 368 SFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCR 427
Query: 294 EALGMFDRMTYENVR 308
+AL +++ M E V+
Sbjct: 428 DALLVYNNMCREGVQ 442
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 63/247 (25%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNY---SYSNKFFESRRVSR 160
+ ++LRA LL VHGQ+ + GF S VFVQ A++D Y +R
Sbjct: 114 FTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGGGVGAAR 173
Query: 161 RLFDE-------------------------------MPERKFATWNTMIDAYARLAEL-- 187
++FDE MPER +WNT++ +AR+ ++
Sbjct: 174 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 233
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
+F++MP+ + SW MI+ Y+ + A F++ + D V+ ++SA A
Sbjct: 234 ARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQ----KDVVSWTAMVSAYAK 289
Query: 245 LGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
+G LD + F + KNL+ WN++ + EAL F M
Sbjct: 290 IGDLDTANEL-------------FDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMML 336
Query: 305 EN-VRPN 310
E RP+
Sbjct: 337 EGRFRPD 343
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ +F KM I +WTTMI+ ++ N R+AL +N + G
Sbjct: 383 NALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQ 442
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D L+ACAH G L G I
Sbjct: 443 LDDTVFIAALAACAHGGLLQEGWSI 467
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 32/195 (16%)
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWD 196
M+ Y+ S +R +FD M ++ +W M+ AYA++ +L LF+ MP +
Sbjct: 248 MISGYATSGDV----EAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKN 303
Query: 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD------ 249
+ SW MIT Y+ N ++ EAL F G D+ T+ +V+SACA LG+++
Sbjct: 304 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 363
Query: 250 -------------LGRG-IQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293
LG I ++ C +GR+ +F+K+ + ++ W ++ A +G
Sbjct: 364 SFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCR 423
Query: 294 EALGMFDRMTYENVR 308
+AL +++ M E V+
Sbjct: 424 DALLVYNNMCREGVQ 438
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 61/244 (25%)
Query: 110 YLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
+ ++LRA LL VHGQ+ + GF S VFVQ A++D Y + +R++F
Sbjct: 114 FTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVY-HRCGGGGGVGAARQVF 172
Query: 164 DE-------------------------------MPERKFATWNTMIDAYARLAEL----- 187
DE MPER +WNT++ +AR+ ++
Sbjct: 173 DEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARA 232
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
+F++MP+ + SW MI+ Y+ + A F++ + D V+ ++SA A +G
Sbjct: 233 VFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQ----KDVVSWTAMVSAYAKIGD 288
Query: 248 LDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN- 306
LD + F + KNL+ WN++ + EAL F M E
Sbjct: 289 LDTANEL-------------FDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGR 335
Query: 307 VRPN 310
RP+
Sbjct: 336 FRPD 339
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID +A+ ++ +F KM I +WTTMI+ ++ N R+AL +N + G
Sbjct: 379 NALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQ 438
Query: 230 SDQVTMATVLSACAHLGALDLGRGI 254
D L+ACAH G L G I
Sbjct: 439 LDDTVFIAALAACAHGGLLQEGWSI 463
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H G S FV A+V+ Y N ++ FDE+ ER +TWN +I YA
Sbjct: 428 IHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMA----FDEISERDTSTWNALISGYA 483
Query: 183 RLAEL-----LFNKMPA----WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
R ++ L +M + ++ +W +++ +NKQ+ A+ FN+ + S D
Sbjct: 484 RCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIY 543
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ +L+AC+ L + G+ + Y C S+ V+ K+
Sbjct: 544 TVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKI 603
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL+C N++ A A+HG E + +F RM VRP+
Sbjct: 604 SNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPD 642
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI---- 178
VHG V K+GF + V+V A++D Y E+++V + M ++ +WN++I
Sbjct: 156 VHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKV----LEGMTQKDCVSWNSIITACV 211
Query: 179 ------DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232
+A L +L +++ ++ +W+ +I +S N E+++ F + +G D
Sbjct: 212 ANGVVYEALDLLENMLLSELEP-NVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDA 270
Query: 233 VTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFK 270
T+A+VL AC+ + L +G+ + Y C + + +F K
Sbjct: 271 RTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSK 330
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308
K +N++ +G +A +F +M E V
Sbjct: 331 FARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVE 368
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 63/253 (24%)
Query: 85 QMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLT---TVHGQVWKNGFSSPVFVQTA 141
Q + PN FS L P Y +L++ LT +H K GF + FVQT
Sbjct: 18 QTKPPN------FSLLHTPPLTSTTYSTILQSSNSLTLGKQLHSHSIKTGFYNHNFVQTK 71
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWT 201
++ YS ++ F ++ W+ +F+KM ++ SWT
Sbjct: 72 LLQMYSINSSFEDA------------------WH------------MFDKMTLKNLHSWT 101
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGS--DQVTMATVLSACAHLGALDLGRGIQ---- 255
++ + F + F + G G D VL+ C LG L+LGR +
Sbjct: 102 AVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVL 161
Query: 256 -------IY-----------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+Y C SL + V + +K+ + WNSI A +G +EAL
Sbjct: 162 KHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALD 221
Query: 298 MFDRMTYENVRPN 310
+ + M + PN
Sbjct: 222 LLENMLLSELEPN 234
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++D YA+ + ++NK+ ++ M+T+Y+ + E + F + S
Sbjct: 582 TLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRP 641
Query: 231 DQVTMATVLSACAHLGALDLG 251
D VT +VLS+C H G++ +G
Sbjct: 642 DHVTFLSVLSSCVHAGSIKIG 662
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,501,272,795
Number of Sequences: 23463169
Number of extensions: 171438053
Number of successful extensions: 527650
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5115
Number of HSP's successfully gapped in prelim test: 1804
Number of HSP's that attempted gapping in prelim test: 458973
Number of HSP's gapped (non-prelim): 34592
length of query: 311
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 169
effective length of database: 9,027,425,369
effective search space: 1525634887361
effective search space used: 1525634887361
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 76 (33.9 bits)