BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044412
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 190/359 (52%), Gaps = 86/359 (23%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
+K+CS+ K LE A ++KT+ N DC L QFI+ CTS F +D + QMQEPNVFV
Sbjct: 35 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTS-FKRLDLAVSTMTQMQEPNVFV 93
Query: 94 YHA----FSSLRHPLQAIAFYLYMLRAEVLLTT-------------------VHGQVWKN 130
Y+A F + HP++++ Y+ MLR V ++ + +WK
Sbjct: 94 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKF 153
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------ 184
GF V +QT ++D YS + + E+R+V FDEMPER W TM+ AY R+
Sbjct: 154 GFGFHVKIQTTLIDFYSATGRIREARKV----FDEMPERDDIAWTTMVSAYRRVLDMDSA 209
Query: 185 ------------------------------AELLFNKMPAWDIRSWTTMITSYSQNKQFR 214
AE LFN+MP DI SWTTMI YSQNK++R
Sbjct: 210 NSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYR 269
Query: 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
EA+ F K + G D+VTM+TV+SACAHLG L++G+ + +Y
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C SL R+LLVFF L +KNL CWNSI E LA HGFA EAL MF +M E+V+PN
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNA 388
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 41/189 (21%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH +NGF V++ +A+VD YS ER
Sbjct: 309 VHMYTLQNGFVLDVYIGSALVDMYSKCGSL---------------ER------------- 340
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
A L+F +P ++ W ++I + + +EAL F K + + VT +V +AC
Sbjct: 341 --ALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398
Query: 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
H G +D GR +IY RS++ + + N+ + + + G +EAL + M
Sbjct: 399 THAGLVDEGR--RIY-----RSMIDDYSIV-SNVEHYGGMVHLFSKAGLIYEALELIGNM 450
Query: 303 TYENVRPNG 311
+E PN
Sbjct: 451 EFE---PNA 456
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 161/327 (49%), Gaps = 62/327 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF------IDYTILVFPQMQ 87
L+ CSS +L+ ++ +++T+ D F+A + ++ C F + Y +F Q+Q
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78
Query: 88 EPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTV-------------------- 123
PN+FV++ FS+ P +A FY ML++ + +
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138
Query: 124 -HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
H Q+ + GF + V+V+ ++V + Y+N F + + R+F +M R +W +M+ Y
Sbjct: 139 THSQIVRFGFQNDVYVENSLV--HMYANCGFIA--AAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+ A +F++MP ++ +W+ MI Y++N F +A+D F K+ G +++ M +
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 238 VLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKN 275
V+S+CAHLGAL+ G Y C + +++ VF L E +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRM 302
L W+SI + LA+HG AH+A+ F +M
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQM 341
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++D + R ++ +F +P D SW+++I + + +A+ F++ G
Sbjct: 289 ALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIP 348
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY 257
VT VLSAC+H G ++ +G++IY
Sbjct: 349 RDVTFTAVLSACSHGGLVE--KGLEIY 373
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 58/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF--HFIDYTILVFPQMQEPNV 91
L++CS +EL+ ++A ++KT D + +F+SFC S F+ Y +VF P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 92 FVYH----AFSSLRHPLQAIAFYLYMLRAEV---------LL------------TTVHGQ 126
F+++ FS P +++ Y ML + LL T +H Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ K G+ + V+ +++++Y+ + F +++ LFD +PE +WN++I Y + +
Sbjct: 141 ITKLGYENDVYAVNSLINSYAVTGNF----KLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+ LF KM + SWTTMI+ Y Q +EAL F++ + S D V++A LSA
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA LGAL+ G+ I Y C + +L VF +++K++ W
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW 316
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ A HG EA+ F M ++PN
Sbjct: 317 TALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 177 MIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
+ID YA+ E+ +F + +++WT +I+ Y+ + REA+ F + +K G +
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 232 QVTMATVLSACAHLGALDLGRGI 254
+T VL+AC++ G ++ G+ I
Sbjct: 348 VITFTAVLTACSYTGLVEEGKLI 370
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 63/349 (18%)
Query: 18 FPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFI 76
+S S + I+ +Q C S+ EL ++ ++ + + Q +SF S +
Sbjct: 2 LKSSSSLVAKSILRHQ---CKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDV 58
Query: 77 DYTILVFPQMQEPNV----FVYHAFSSLRHPLQAIAFYLYMLRAEVLLT----------- 121
DY ++ +P FV FS+ R+P ++I+ Y+ MLR +L
Sbjct: 59 DYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSS 118
Query: 122 ----------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
++H V K+G +F+ ++ Y F + +R+LFDEMP +
Sbjct: 119 SRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGS----FRDQASARKLFDEMPHKNL 174
Query: 172 ATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
TWN+++DAYA+ A L+F++M D+ +W++MI Y + ++ +AL+ F++ +
Sbjct: 175 VTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRM 234
Query: 227 GTG-SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
G+ +++VTM +V+ ACAHLGAL+ G+ + Y C S+G
Sbjct: 235 GSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGD 294
Query: 264 SLLVFFK--LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF++ ++E + L WN+I LA HGF E+L +F +M + P+
Sbjct: 295 AWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPD 343
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 176 TMIDAYARLAELLFNKMPAW-----------DIRSWTTMITSYSQNKQFREALDAFNKTK 224
++ID YA+ + AW D W +I + + RE+L F+K +
Sbjct: 281 SLIDMYAKCGSI----GDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMR 336
Query: 225 KSGTGSDQVTMATVLSACAHLG 246
+S D++T +L+AC+H G
Sbjct: 337 ESKIDPDEITFLCLLAACSHGG 358
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 148/319 (46%), Gaps = 58/319 (18%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L+ CS+ +L+ ++ I+K N D L +Q IS +S F Y LVF Q+Q P+ F
Sbjct: 27 LRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLIS-VSSSFGETQYASLVFNQLQSPSTFT 85
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEV----------------------LLTTVHGQV 127
++ + S P +A+ ++ M+ + L T VHG
Sbjct: 86 WNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLA 145
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-----DAYA 182
K GF + VF Q ++D Y K R+V FD+MP R +W TM+ ++
Sbjct: 146 IKAGFFNDVFFQNTLMDLYFKCGKPDSGRKV----FDKMPGRSIVSWTTMLYGLVSNSQL 201
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
AE++FN+MP ++ SWT MIT+Y +N++ EA F + + ++ T+ +L A
Sbjct: 202 DSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 261
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
LG+L +GR + Y C SL + VF ++ K+L WN
Sbjct: 262 TQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWN 321
Query: 281 SITEALAIHGFAHEALGMF 299
S+ +L +HG EAL +F
Sbjct: 322 SMITSLGVHGCGEEALSLF 340
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 92/245 (37%), Gaps = 70/245 (28%)
Query: 76 IDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYM---------------LRA 116
+D +VF QM NV + A + R P +A + M L+A
Sbjct: 201 LDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQA 260
Query: 117 EVLLTT------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170
L + VH KNGF F+ TA++D YS ++R+V FD M +
Sbjct: 261 STQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKV----FDVMQGKS 316
Query: 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-G 229
AT W +MITS + EAL F + ++ +
Sbjct: 317 LAT--------------------------WNSMITSLGVHGCGEEALSLFEEMEEEASVE 350
Query: 230 SDQVTMATVLSACAHLGALDLG-----RGIQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284
D +T VLSACA+ G + G R IQ+Y S +RE N + +
Sbjct: 351 PDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGIS---------PIREHNACMIQLLEQ 401
Query: 285 ALAIH 289
AL +
Sbjct: 402 ALEVE 406
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 53/348 (15%)
Query: 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70
++F+++ ++ R + + L+ C +I + ++A I++T + D F+ + I C+
Sbjct: 13 STFRRDPDSNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCS 72
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVL-----LT 121
+ +DY VF + PNV++Y A F S ++ Y M+ VL +T
Sbjct: 73 T-LDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 122 TV------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169
+V H QV K GF S V M++ Y S + +++ +FDEMP+R
Sbjct: 132 SVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKK----MFDEMPDR 187
Query: 170 KFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224
MI+ Y+ + A LF + D WT MI +NK+ +AL+ F + +
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247
Query: 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLG 262
+++ T VLSAC+ LGAL+LGR + + C +
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307
Query: 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ VF +R+K+++ +N++ LA+HG + EA+ F M RPN
Sbjct: 308 EARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPN 355
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +I+ Y+R ++ +F M D+ S+ TMI+ + + EA++ F G
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+QVT+ +L+AC+H G LD+G
Sbjct: 354 PNQVTLVALLNACSHGGLLDIG 375
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 154/359 (42%), Gaps = 82/359 (22%)
Query: 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH--FIDYTILVFPQMQEPNVF 92
++ S+ E++ +A ++KT D F A + ++F + + Y + ++ PN F
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 93 ----VYHAFSSLRHPLQAIAFYLYMLRAEVLLTT---------------------VHGQV 127
V A+++ P A+ + ML V +HG
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRV---------------------------SR 160
K+G + VFV+ +V+ Y S F +R+V +R
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226
Query: 161 RLFDEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
LFDEM ER +WN MI YA + A+ +F+ MP D+ SW M+T+Y+ + E
Sbjct: 227 ALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNE 286
Query: 216 ALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIY----------------- 257
L+ FNK T D T+ +VLSACA LG+L G + +Y
Sbjct: 287 VLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALV 346
Query: 258 -----CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C + ++L VF ++++ WNSI L++HG +AL +F M YE +PNG
Sbjct: 347 DMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 30/130 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + K+G F+ TA+VD YS K ++ V
Sbjct: 326 VHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEV------------------------ 361
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
F D+ +W ++I+ S + ++AL+ F++ G + +T VLSAC
Sbjct: 362 ------FRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSAC 415
Query: 243 AHLGALDLGR 252
H+G LD R
Sbjct: 416 NHVGMLDQAR 425
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 58/331 (17%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV 93
L++ S E + + A+I+ + F+ + + FC + +DY +F Q+ PNVF+
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFC-DKIEDMDYATRLFNQVSNPNVFL 75
Query: 94 YH----AFSSLRHPLQAIAFYLYMLRAEVLLTT----------------------VHGQV 127
Y+ A++ I Y +LR L VHG +
Sbjct: 76 YNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135
Query: 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL 187
K G V + A++D Y + ++ +V FDEM ER +WN+++ YARL ++
Sbjct: 136 CKFGPRFHVVTENALIDMYMKFDDLVDAHKV----FDEMYERDVISWNSLLSGYARLGQM 191
Query: 188 -----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
LF+ M I SWT MI+ Y+ + EA+D F + + +G D++++ +VL +C
Sbjct: 192 KKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 243 AHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWN 280
A LG+L+LG+ I +Y C + +++ +F ++ K+++ W+
Sbjct: 252 AQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWS 311
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ A HG AH A+ F+ M V+PNG
Sbjct: 312 TMISGYAYHGNAHGAIETFNEMQRAKVKPNG 342
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
++ N +I+ Y++ + LF +M D+ SW+TMI+ Y+ + A++ FN+
Sbjct: 274 KQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLG 251
+++ + +T +LSAC+H+G G
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGMWQEG 361
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 171/367 (46%), Gaps = 75/367 (20%)
Query: 2 FVKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFL 61
++ + A+ S N F TS ++IH N LK ++K+ C ++ T N D
Sbjct: 1 MIQRINALSLSSGLNWFVTS---LKIH--GNNLK---TLKQSHCY---MIITGLNRDNLN 49
Query: 62 AKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHP-LQAIAFYLY---- 112
+FI C++ H + Y VF PN ++++ A S L P +IA +Y
Sbjct: 50 VAKFIEACSNAGH-LRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLW 108
Query: 113 -------------MLRAEVLLTTV------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153
+L+ V ++ V HGQV GF S V V T ++ Y
Sbjct: 109 ALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLG 168
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIR---SWTTMIT 205
++R+ +FDEM + WN ++ Y ++ E+ L MP W +R SWT +I+
Sbjct: 169 DARK----MFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCW-VRNEVSWTCVIS 223
Query: 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RG--- 253
Y+++ + EA++ F + D+VT+ VLSACA LG+L+LG RG
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR 283
Query: 254 --------IQIYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
I +Y +S + ++L VF + E+N++ W +I LA HG EAL MF+RM
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMV 343
Query: 304 YENVRPN 310
VRPN
Sbjct: 344 KAGVRPN 350
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 169 RKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKT 223
R + N +ID YA+ + +F + ++ +WTT+I + + EAL FN+
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 224 KKSGTGSDQVTMATVLSACAHLGALDLGR 252
K+G + VT +LSAC+H+G +DLG+
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGK 371
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 158/347 (45%), Gaps = 72/347 (20%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILV 82
IR H + L C +++ L ++A ++K + + + I FC HF + Y I V
Sbjct: 31 IRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISV 90
Query: 83 FPQMQEPNVFVY------HAFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
F +QEPN+ ++ HA SS P+ A+ Y+ M+ +L +
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK 148
Query: 123 -------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175
+HG V K G ++V T+++ Y + + ++ +V FD+ P R ++
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV----FDKSPHRDVVSYT 204
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+I YA A+ LF+++P D+ SW MI+ Y++ ++EAL+ F K+
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVF 268
D+ TM TV+SACA G+++LGR + ++ C L + +F
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Query: 269 FKLREKNLLCWNSITEALAIHGFAH-----EALGMFDRMTYENVRPN 310
+L K+++ WN++ I G+ H EAL +F M PN
Sbjct: 325 ERLPYKDVISWNTL-----IGGYTHMNLYKEALLLFQEMLRSGETPN 366
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 29/165 (17%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID Y++ EL LF ++P D+ SW T+I Y+ ++EAL F + +SG
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY------------------------CRSLGRSL 265
+ VTM ++L ACAHLGA+D+GR I +Y C + +
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
VF + K+L WN++ A+HG A + +F RM ++P+
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPD 469
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
++ID YA+ ++ +FN + + SW MI ++ + + + D F++ +K G
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Query: 231 DQVTMATVLSACAHLGALDLGRGI 254
D +T +LSAC+H G LDLGR I
Sbjct: 469 DDITFVGLLSACSHSGMLDLGRHI 492
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 157/392 (40%), Gaps = 115/392 (29%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF 92
L KC+++ +++ ++A I++ N + D +A + IS S + + VF Q+QEPNV
Sbjct: 25 DLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLIS-ALSLCRQTNLAVRVFNQVQEPNVH 83
Query: 93 V----YHAFSSLRHPLQAIAFYLYMLRAEV---------LLTTVHGQVW----------- 128
+ A + P QA + M R + LL GQ W
Sbjct: 84 LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHI 143
Query: 129 -KNGFSSPVFVQTAMVDNYSYSN--------KFFESR---------------------RV 158
K G SS ++V A++D YS K FE R
Sbjct: 144 EKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRD 203
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+RRLFDEMP+R +WNTM+D YAR E+ LF KMP + SW+TM+ YS+
Sbjct: 204 ARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDM 263
Query: 214 REALDAFNKTK---------------------------------KSGTGSDQVTMATVLS 240
A F+K SG D + ++L+
Sbjct: 264 EMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILA 323
Query: 241 ACAHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLC 278
AC G L LG I C +L ++ VF + +K+L+
Sbjct: 324 ACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WN++ L +HG EA+ +F RM E +RP+
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N ++D YA+ L +FN +P D+ SW TM+ + +EA++ F++ ++ G
Sbjct: 354 NALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIR 413
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D+VT VL +C H G +D G
Sbjct: 414 PDKVTFIAVLCSCNHAGLIDEG 435
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 58/329 (17%)
Query: 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH 95
+CS+++EL+ ++A+++KT D A + ++FC + ++Y LVF ++ N FV++
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWN 93
Query: 96 ----AFSSLRHPLQAIAFYLYMLRAEVLLTT-----------------------VHGQVW 128
FS P AI+ ++ ML + + +HG V
Sbjct: 94 TIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVI 153
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL---- 184
K G F++ M+ Y E+ R+ F M WN+MI +A+
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRI----FLGMIGFDVVAWNSMIMGFAKCGLID 209
Query: 185 -AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
A+ LF++MP + SW +MI+ + +N +F++ALD F + ++ D TM ++L+ACA
Sbjct: 210 QAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACA 269
Query: 244 HLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNS 281
+LGA + GR I Y C + L VF +K L CWNS
Sbjct: 270 YLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNS 329
Query: 282 ITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ LA +GF A+ +F + + P+
Sbjct: 330 MILGLANNGFEERAMDLFSELERSGLEPD 358
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 32/127 (25%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H + +N F V TA++D Y E V F+ P+++ + WN+MI A
Sbjct: 280 IHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNV----FECAPKKQLSCWNSMILGLA 335
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE-ALDAFNKTKKSGTGSDQVTMATVLSA 241
N F E A+D F++ ++SG D V+ VL+A
Sbjct: 336 ---------------------------NNGFEERAMDLFSELERSGLEPDSVSFIGVLTA 368
Query: 242 CAHLGAL 248
CAH G +
Sbjct: 369 CAHSGEV 375
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 162/338 (47%), Gaps = 62/338 (18%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID-YTILVFPQMQE 88
+ ++L C ++ +++ ++ +++ + C++ + I T +D Y V +Q
Sbjct: 52 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111
Query: 89 PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEV---------------------LLTTV 123
N F++ A ++ +AIA Y M + E+ L
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 124 HGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
H Q ++ GF V+V M+D Y ES +R++FDEMPER +W +I AYA
Sbjct: 172 HAQTFRLRGFCF-VYVGNTMIDMYVKC----ESIDCARKVFDEMPERDVISWTELIAAYA 226
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
R+ + LF +P D+ +WT M+T ++QN + +EAL+ F++ +KSG +D+VT+A
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286
Query: 238 VLSACAHLGALDLG-RGIQIYCRS---------LGRSLL--------------VFFKLRE 273
+SACA LGA R +QI +S +G +L+ VF +
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNN 346
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRM-TYENVRPN 310
KN+ ++S+ LA HG A EAL +F M T ++PN
Sbjct: 347 KNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPN 384
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 167 PERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221
P + +ID Y++ + +F M ++ ++++MI + + + +EAL F+
Sbjct: 314 PSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFH 373
Query: 222 -KTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
++ + VT L AC+H G +D GR +
Sbjct: 374 YMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQV 407
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 70/347 (20%)
Query: 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHF--IDYTILVFPQMQEP 89
Q+ C +I++L ++A +K+ D A + + FC TS H +DY +F QM +
Sbjct: 29 QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88
Query: 90 NVFVYHAF------SSLRHPLQAIAFYLYMLRAEVLLTT--------------------- 122
N F ++ S L AI + M+ E +
Sbjct: 89 NCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGK 148
Query: 123 -VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV--SRRLFDE----MPERK----- 170
+HG K GF FV + +V Y F + RV + + ++ M +R+
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCG-FMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207
Query: 171 FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
WN MID Y RL A +LF+KM + SW TMI+ YS N F++A++ F + KK
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGR 263
+ VT+ +VL A + LG+L+LG + +Y C + +
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ VF +L +N++ W+++ AIHG A +A+ F +M VRP+
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y++ + +F ++P ++ +W+ MI ++ + Q +A+D F K +++G
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 230 SDQVTMATVLSACAHLGALDLGR 252
V +L+AC+H G ++ GR
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGR 395
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 151/334 (45%), Gaps = 59/334 (17%)
Query: 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP 89
I+ + K + L+ V + ++ + + FL + + FCT R + Y +F + P
Sbjct: 27 ISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFP 86
Query: 90 NVFVYHAF-----SSLR-HPLQAIAFYLYMLRAEV-----------LLTT---------- 122
N +Y A SSL H A +F+ M+ V L +T
Sbjct: 87 NTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTP 146
Query: 123 -VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
VH ++K+GF V VQTA++ +Y+ S ++R+LFDEM ER +W M+ Y
Sbjct: 147 LVHTHLFKSGFHLYVVVQTALLHSYASSVSHIT---LARQLFDEMSERNVVSWTAMLSGY 203
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTM 235
AR ++ LF MP D+ SW ++ + +QN F EA+ F + + ++VT+
Sbjct: 204 ARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTV 263
Query: 236 ATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLRE 273
VLSACA G L L +GI + C +L + VF +
Sbjct: 264 VCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASK 323
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
K+L WNS+ A+HG + EA+ +F+ M N+
Sbjct: 324 KSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNI 357
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 33/138 (23%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +H ++ SS VFV ++VD Y E+ V F ++ WN+MI
Sbjct: 278 LAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSV----FKMASKKSLTAWNSMI 333
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK---SGTGSDQVTM 235
+ +A + + EA+ F + K + D +T
Sbjct: 334 NCFA--------------------------LHGRSEEAIAVFEEMMKLNINDIKPDHITF 367
Query: 236 ATVLSACAHLGALDLGRG 253
+L+AC H G + GRG
Sbjct: 368 IGLLNACTHGGLVSKGRG 385
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 148/327 (45%), Gaps = 58/327 (17%)
Query: 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA- 96
SS+ + ++ VK+ D F+A I C +D VF ++E +V +++
Sbjct: 145 SSLSLGQSLHGMAVKSAVGSDVFVANSLI-HCYFSCGDLDSACKVFTTIKEKDVVSWNSM 203
Query: 97 ---FSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGF 132
F P +A+ + M +V + V + +N
Sbjct: 204 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRV 263
Query: 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA-----RLAEL 187
+ + + AM+D Y+ +++R LFD M E+ TW TM+D YA A
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKR----LFDAMEEKDNVTWTTMLDGYAISEDYEAARE 319
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK-KSGTGSDQVTMATVLSACAHLG 246
+ N MP DI +W +I++Y QN + EAL F++ + + +Q+T+ + LSACA +G
Sbjct: 320 VLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVG 379
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL+LGR I Y C L +S VF + ++++ W+++
Sbjct: 380 ALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIG 439
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPNG 311
LA+HG +EA+ MF +M NV+PNG
Sbjct: 440 GLAMHGCGNEAVDMFYKMQEANVKPNG 466
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 140/328 (42%), Gaps = 47/328 (14%)
Query: 12 SFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT- 70
+F + PT+ + HI + +++C S+++L+ + +++T D + A + +
Sbjct: 17 NFSNPNQPTTNNERSRHI--SLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL 74
Query: 71 SRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
S F ++Y VF ++ +PN F ++ A++S P+ +I +L M+ Q
Sbjct: 75 SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVS--------ESQ 126
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
+ N ++ P ++ A + + V + ++ F N++I Y +
Sbjct: 127 CYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV----FVA-NSLIHCYFSCGD 181
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L +F + D+ SW +MI + Q +AL+ F K + + VTM VLSA
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
CA + L+ GR + Y C S+ + +F + EK+ + W
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENV 307
++ + AI A + + M +++
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDI 329
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 171 FATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225
F + +I Y++ +L +FN + D+ W+ MI + + EA+D F K ++
Sbjct: 400 FHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 226 SGTGSDQVTMATVLSACAHLGALD 249
+ + VT V AC+H G +D
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVD 483
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 139/305 (45%), Gaps = 59/305 (19%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR 115
L FIS C S DY VF +Q PNV V++A +S + PL++++F+ M
Sbjct: 37 LLLAHFISICGS-LSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKS 95
Query: 116 AEV---------LLTT------------VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154
+ LL + VHG++ + GF ++ +V+ Y+ + +
Sbjct: 96 RGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGD 155
Query: 155 SRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQ 209
+++V FDEM ER WN MI + ++ LF +M I SW +MI+S S+
Sbjct: 156 AQKV----FDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSK 211
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ-------------- 255
+ REAL+ F + G D+ T+ TVL A LG LD G+ I
Sbjct: 212 CGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFIT 271
Query: 256 -------IYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
YC+S L + +F K++ +N++ WN++ A++G + +FD M E
Sbjct: 272 VGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEG 331
Query: 307 -VRPN 310
V PN
Sbjct: 332 KVAPN 336
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 33/220 (15%)
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
L +H Q +++GF S F T ++ Y+ +RR+FDEM +R WN MI
Sbjct: 101 LRLLHSQFFRSGFESDSFCCTTLITAYAKLGALC----CARRVFDEMSKRDVPVWNAMIT 156
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQV 233
Y R ++ LF+ MP ++ SWTT+I+ +SQN + EAL F K + +
Sbjct: 157 GYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHI 216
Query: 234 TMATVLSACAHLGALDLGRGIQIYCRSLG---------RSLLVFFKL------------- 271
T+ +VL ACA+LG L++GR ++ Y R G ++ ++ K
Sbjct: 217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
++NL WNS+ +LA HG EAL +F +M E +P+
Sbjct: 277 GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPD 316
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 143 VDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTT 202
++ Y+ N FF++ V + + MID RL E L N+ ++ SW +
Sbjct: 237 LEGYARENGFFDNIYVCNATIE------MYSKCGMIDVAKRLFEELGNQR---NLCSWNS 287
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
MI S + + + EAL F + + G D VT +L AC H G + G+
Sbjct: 288 MIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQ 337
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 156/372 (41%), Gaps = 88/372 (23%)
Query: 25 IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC----TSRFHFIDYTI 80
I IH + L C +++ L ++ +K + D + + I C + + +
Sbjct: 3 IAIHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLL 62
Query: 81 LVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTT-------------- 122
L FP EP+ F+++ +S P ++A ++ M+R +
Sbjct: 63 LCFP---EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENF 119
Query: 123 --------VHGQVWKNGFSSPVFVQTAMVDNYS------YSNKFFESRRV---------- 158
+H Q K+G S +FV T ++ Y ++ K F+
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179
Query: 159 -----------SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTT 202
+R +FD+M R +WN M+ Y + EL +F++MP D SW+T
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----- 257
MI + N F E+ F + +++G ++V++ VLSAC+ G+ + G+ + +
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 258 -----------------CRSLGRSLLVFFKLREKN-LLCWNSITEALAIHGFAHEALGMF 299
C ++ + LVF ++EK ++ W S+ LA+HG EA+ +F
Sbjct: 300 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF 359
Query: 300 DRMTYENVRPNG 311
+ MT V P+G
Sbjct: 360 NEMTAYGVTPDG 371
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V K G+S V V A++D YS ++R +F+ M E++
Sbjct: 291 LHGFVEKAGYSWIVSVNNALIDMYSRCGNV----PMARLVFEGMQEKRC----------- 335
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
I SWT+MI + + Q EA+ FN+ G D ++ ++L AC
Sbjct: 336 --------------IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHAC 381
Query: 243 AHLGALDLGR 252
+H G ++ G
Sbjct: 382 SHAGLIEEGE 391
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 69/331 (20%)
Query: 30 IANQLKKCSSIKELECVYATIVKTN-------ANLDCFLAKQFISFCTSRFHFIDYTILV 82
+A + K S+ E+ ++A I++ N L+ L + + S R +++ +
Sbjct: 32 LAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIR-----HSLAL 86
Query: 83 FPQMQEPNVFVYHA------FSSLRHPLQAIAFYLYMLRAEV---------LLTT----- 122
F Q +P++F++ A + L+ QA Y+ +L +E+ LL +
Sbjct: 87 FHQTIDPDLFLFTAAINTASINGLKD--QAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS 144
Query: 123 ---VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
+H V K G +V T +VD Y+ +++V FD MPER + MI
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKV----FDRMPERSLVSSTAMIT 200
Query: 180 AYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQV 233
YA+ A LF+ M DI SW MI Y+Q+ +AL F K G D++
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
T+ LSAC+ +GAL+ GR I ++ C SL ++LVF
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320
Query: 272 REKNLLCWNSITEALAIHGFAHEALGMFDRM 302
K+++ WN++ A+HG++ +AL +F+ M
Sbjct: 321 PRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 177 MIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGS 230
+ID Y++ A L+FN P DI +W MI Y+ + ++AL FN+ + +G
Sbjct: 300 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQP 359
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGR 263
+T L ACAH G ++ GI+I+ S+G+
Sbjct: 360 TDITFIGTLQACAHAGLVN--EGIRIF-ESMGQ 389
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%)
Query: 39 SIKELECVYATIVKTNANLDCFLAKQFI-SFCTSRFHFIDYTILVFPQMQEPNVFVYHAF 97
+ KE+ ++A + D L F+ + S ++DY + + ++P +F ++
Sbjct: 18 TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77
Query: 98 --SSLRHPLQAIAFYLYM-------------------------LRAEVLLTTVHGQVWKN 130
+ + P+ +F Y LR VHG +
Sbjct: 78 IRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRR 137
Query: 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL--- 187
GF + VQT ++ Y+ +V F+ +P F M+ A AR ++
Sbjct: 138 GFDNDPHVQTGLISLYAELGCLDSCHKV----FNSIPCPDFVCRTAMVTACARCGDVVFA 193
Query: 188 --LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245
LF MP D +W MI+ Y+Q + REAL+ F+ + G + V M +VLSAC L
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253
Query: 246 GALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSIT 283
GALD GR Y C + +++ VF+ + EKN+ W+S
Sbjct: 254 GALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSAL 313
Query: 284 EALAIHGFAHEALGMFDRMTYENVRPN 310
LA++GF + L +F M + V PN
Sbjct: 314 NGLAMNGFGEKCLELFSLMKQDGVTPN 340
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255
D T +I+ Y++ LD+ +K S D V +++ACA G +
Sbjct: 142 DPHVQTGLISLYAE----LGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV------- 190
Query: 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ R L F + E++ + WN++ A G + EAL +F M E V+ NG
Sbjct: 191 VFARKL------FEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNG 240
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 35/217 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH V K+GFS+ +F+Q ++D YS + R+V FD+MP+R TWN+++
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV----FDKMPQRNIYTWNSVVTGLT 97
Query: 183 RL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
+L A+ LF MP D +W +M++ ++Q+ + EAL F K G ++ + A+
Sbjct: 98 KLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFAS 157
Query: 238 VLSACAHLGALDLGRGIQIY------------------------CRSLGRSLLVFFKLRE 273
VLSAC+ L D+ +G+Q++ C ++ + VF ++ +
Sbjct: 158 VLSACSGLN--DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215
Query: 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+N++ WNS+ +G A EAL +F M V P+
Sbjct: 216 RNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 142/342 (41%), Gaps = 67/342 (19%)
Query: 31 ANQLKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87
A+ L CS + ++ V++ I K+ D ++ + S+ ++ VF +M
Sbjct: 156 ASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM-YSKCGNVNDAQRVFDEMG 214
Query: 88 EPNVFVYHA----FSSLRHPLQAIAFYLYMLRA-----EVLLTTV--------------- 123
+ NV +++ F ++A+ + ML + EV L +V
Sbjct: 215 DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274
Query: 124 -HGQVWKNG-FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
HG+V KN + + + A VD Y+ ++ E+R + FD MP R +MI Y
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFI----FDSMPIRNVIAETSMISGY 330
Query: 182 A-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A + A L+F KM ++ SW +I Y+QN + EAL F K+ + A
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFA 390
Query: 237 TVLSACAHLGALDLGRGIQIY----------------------------CRSLGRSLLVF 268
+L ACA L L LG ++ C + LVF
Sbjct: 391 NILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVF 450
Query: 269 FKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
K+ E++ + WN++ A +G+ +EAL +F M +P+
Sbjct: 451 RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD 492
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 163 FDEMPERKFATWNTMIDAYARLA-----ELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217
F E N++ID Y + L+F KM D SW MI ++QN EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLL 277
+ F + +SG D +TM VLSAC H G ++ GR Y S+ R V LR+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRH---YFSSMTRDFGV-APLRDH--- 531
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYE 305
+ + + L GF EA M + M +
Sbjct: 532 -YTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 153/366 (41%), Gaps = 103/366 (28%)
Query: 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA 96
C L V+A I++ L +A Q +S C+S DY++ +F +E N FV +A
Sbjct: 39 CKDTASLRHVHAQILRRGV-LSSRVAAQLVS-CSSLLKSPDYSLSIFRNSEERNPFVLNA 96
Query: 97 F-----------SSLRHPLQAIAFYLYMLRAEV---------------------LLTTVH 124
SS+RH ++ MLR V L +H
Sbjct: 97 LIRGLTENARFESSVRH-------FILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALH 149
Query: 125 GQVWKNGFSSPVFVQTAMVDNYSYSNK-------FFES-RRVSRR--------------- 161
KN FV+ ++VD Y+ + + F ES R+ +
Sbjct: 150 AATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRA 209
Query: 162 --------LFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
LF MPER +W+T+I Y EL LF MP ++ SWTT+I +S
Sbjct: 210 KDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFS 269
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC---------- 258
Q + A+ + + + G ++ T+A VLSAC+ GA LG GI+I+
Sbjct: 270 QTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGA--LGSGIRIHGYILDNGIKLD 327
Query: 259 RSLGRSLL--------------VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304
R++G +L+ VF + K++L W ++ + A+HG H+A+ F +M Y
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387
Query: 305 ENVRPN 310
+P+
Sbjct: 388 SGEKPD 393
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 82 VFPQMQEPNVFVY----HAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137
+F M E NV + + FS AI+ Y ML + G +
Sbjct: 249 LFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML--------------EKGLKPNEY 294
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKM 192
A++ S S R+ + D + A ++D YA+ EL +F+ M
Sbjct: 295 TIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM 354
Query: 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
DI SWT MI ++ + +F +A+ F + SG D+V VL+AC + +DLG
Sbjct: 355 NHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLG 413
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 116 AEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
+E L +HG K G + V V TA++ YS +F ++R V FD M ++ TW
Sbjct: 88 SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLV----FDYMEDKNSVTW 143
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
NTMID Y R ++ +F+KMP D+ SWT MI + + EAL F + + SG
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203
Query: 230 SDQVTMATVLSACAHLGALDLG--------------------RGIQIYCR--SLGRSLLV 267
D V + L+AC +LGAL G I +YCR + + V
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F+ + ++ ++ WNS+ A +G AHE+L F +M + +P+
Sbjct: 264 FYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPD 306
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N++ID Y R A +F M + SW ++I ++ N E+L F K ++ G
Sbjct: 245 NSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFK 304
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT L+AC+H+G ++ G
Sbjct: 305 PDAVTFTGALTACSHVGLVEEG 326
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 51/282 (18%)
Query: 76 IDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVL-LTTVHGQVWKN 130
ID + +F +M E N+ ++ A +A+ + M R +V+ T + + KN
Sbjct: 156 IDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKN 215
Query: 131 GFSSP------------VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
G + AM+ Y+ +N+ E+ + LF MPER FA+WNTMI
Sbjct: 216 GKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQ----LFQVMPERDFASWNTMI 271
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
+ R E+ LF++MP ++ SWTTMIT Y +NK+ EAL+ F+K + G+ V
Sbjct: 272 TGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNV 331
Query: 234 -TMATVLSACAHLGALDLGRGI-QIYCRSLGR-----------------SLLVFFKLREK 274
T ++LSAC+ L L G+ I Q+ +S+ + L+ K+ +
Sbjct: 332 GTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDN 391
Query: 275 NLLC------WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+C WNS+ A HG EA+ M+++M +P+
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPS 433
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V TAMV Y S + ++ LF EMPER +WNTMID YA+ + LF+
Sbjct: 109 VVTWTAMVSGYLRSKQL----SIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFD 164
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+MP +I SW +M+ + Q + EA++ F + + D V+ ++ A G +D
Sbjct: 165 EMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR----DVVSWTAMVDGLAKNGKVDE 220
Query: 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302
R + F + E+N++ WN++ A + EA +F M
Sbjct: 221 ARRL-------------FDCMPERNIISWNAMITGYAQNNRIDEADQLFQVM 259
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 157 RVSRRLFDEMPERK-FATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQN 210
R +R LFD + RK TW M+ Y R +AE+LF +MP ++ SW TMI Y+Q+
Sbjct: 94 REARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQS 153
Query: 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270
+ +AL+ F++ + V+ +++ A G +D ++ +F +
Sbjct: 154 GRIDKALELFDEMPERNI----VSWNSMVKALVQRGRID-------------EAMNLFER 196
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ ++++ W ++ + LA +G EA +FD M N+
Sbjct: 197 MPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNI 233
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 23/155 (14%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQ 212
+R+LFD +PER TW +I Y +L ++ LF+++ + ++ +WT M++ Y ++KQ
Sbjct: 65 ARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQ 124
Query: 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272
A F + + V+ T++ A G +D ++L +F ++
Sbjct: 125 LSIAEMLFQEMPERNV----VSWNTMIDGYAQSGRID-------------KALELFDEMP 167
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
E+N++ WNS+ +AL G EA+ +F+RM +V
Sbjct: 168 ERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDV 202
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
D+ SW +MI Y+ + +EA++ +N+ +K G VT +L AC+H G ++ G
Sbjct: 398 DLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 31/211 (14%)
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V +NG + + A++D +S E+RR+ FD + +R +W TMI YAR
Sbjct: 283 VKENGLRMTIPLVNALMDMFSKCGDIHEARRI----FDNLEKRTIVSWTTMISGYARCGL 338
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
L LF+ M D+ W MI Q K+ ++AL F + + S T D++TM LSA
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398
Query: 242 CAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCW 279
C+ LGALD+G I Y C ++ +L VF ++ +N L +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY 458
Query: 280 NSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+I LA+HG A A+ F+ M + P+
Sbjct: 459 TAIIGGLALHGDASTAISYFNEMIDAGIAPD 489
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 133/321 (41%), Gaps = 51/321 (15%)
Query: 23 SFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYTIL 81
SF+ + + + L+KC + L+ + A ++ LD F + + I+FC S ++DY++
Sbjct: 49 SFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVK 108
Query: 82 VFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHG--QVWKNGFSSP 135
+ ++ PN+F ++ FS +P ++ Y MLR HG + + F+ P
Sbjct: 109 ILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLR--------HGCCESRPDHFTYP 160
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V + S + RL E N I +A ++ +F+
Sbjct: 161 VLFKVCADLRLSSLGHMILGHVLKLRL-----ELVSHVHNASIHMFASCGDMENARKVFD 215
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250
+ P D+ SW +I Y + + +A+ + + G D VTM ++S+C+ LG DL
Sbjct: 216 ESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLG--DL 273
Query: 251 GRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286
RG + Y C + + +F L ++ ++ W ++
Sbjct: 274 NRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGY 333
Query: 287 AIHGFAHEALGMFDRMTYENV 307
A G + +FD M ++V
Sbjct: 334 ARCGLLDVSRKLFDDMEEKDV 354
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/256 (17%), Positives = 102/256 (39%), Gaps = 46/256 (17%)
Query: 14 KKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT--- 70
K+N ++ + + + + KC I E ++ + K + +S+ T
Sbjct: 284 KENGLRMTIPLV--NALMDMFSKCGDIHEARRIFDNLEK----------RTIVSWTTMIS 331
Query: 71 --SRFHFIDYTILVFPQMQEPNVFVYHAF----SSLRHPLQAIAFYLYMLRAEVL---LT 121
+R +D + +F M+E +V +++A + A+A + M + +T
Sbjct: 332 GYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEIT 391
Query: 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H Q +D + +++ E +S + A +++D Y
Sbjct: 392 MIH--------CLSACSQLGALDVGIWIHRYIEKYSLSLNV---------ALGTSLVDMY 434
Query: 182 ARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
A+ + +F+ + + ++T +I + + A+ FN+ +G D++T
Sbjct: 435 AKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFI 494
Query: 237 TVLSACAHLGALDLGR 252
+LSAC H G + GR
Sbjct: 495 GLLSACCHGGMIQTGR 510
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 38/198 (19%)
Query: 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+Q M+ N + F SR ++ F + E ++ ++ I + +I
Sbjct: 72 IQAQMIINGLILDPFASSRLIA---FCALSESRYLDYSVKI----------LKGIENPNI 118
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSG---TGSDQVTMATVLSACAHL-----GALD 249
SW I +S+++ +E+ + + + G + D T + CA L G +
Sbjct: 119 FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMI 178
Query: 250 LGRGIQIY-----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292
LG +++ C + + VF + ++L+ WN + G A
Sbjct: 179 LGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEA 238
Query: 293 HEALGMFDRMTYENVRPN 310
+A+ ++ M E V+P+
Sbjct: 239 EKAIYVYKLMESEGVKPD 256
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 123/295 (41%), Gaps = 49/295 (16%)
Query: 62 AKQFISFCTSRFHFIDY-------TILVFPQMQEPN------VFVYHAFSSLRHPLQAIA 108
+K+ +S+ TS F FI TI+ + EP+ FV S+
Sbjct: 60 SKEVVSYATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFP 119
Query: 109 FYLYMLRAE-----VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163
F A+ L+ T+H Q + G S +F ++ YS + +LF
Sbjct: 120 FVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYS----LIAPIDSALQLF 175
Query: 164 DEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALD 218
DE P+R T+N +ID + E+ LF+ MP D+ SW ++I+ Y+Q REA+
Sbjct: 176 DENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIK 235
Query: 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------- 257
F++ G D V + + LSACA G G+ I Y
Sbjct: 236 LFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYA 295
Query: 258 -CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C + ++ +F +K L WN++ LA+HG + F +M ++P+G
Sbjct: 296 KCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 178 IDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
ID + EL +K + +W MIT + + +D F K SG D VT +
Sbjct: 300 IDTAMEIFELCSDKT----LFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFIS 355
Query: 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
VL C+H G +D R + RSL + + + + + L G EA
Sbjct: 356 VLVGCSHSGLVDEARNLFDQMRSLYDV--------NREMKHYGCMADLLGRAGLIEEAAE 407
Query: 298 MFDRMTYEN 306
M ++M +
Sbjct: 408 MIEQMPKDG 416
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 132/311 (42%), Gaps = 80/311 (25%)
Query: 40 IKELECVYATIVKTNANLDCFLAKQFISF-CTSRFHFIDYTILVFPQMQEPNVFVYHAF- 97
+K+L+ V+A ++ T L + I+ C++R I YT L+F + P+ F++++
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVI 79
Query: 98 ---SSLRHPLQAIAFYLYMLRAEV---------------------LLTTVHGQVWKNGFS 133
S LR PL +A+Y ML + V + VH +GF
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139
Query: 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP 193
+VQ A+V YS +R+V FD MPE+ WN
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQV----FDRMPEKSIVAWN------------------ 177
Query: 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
++++ + QN EA+ F + ++SG D T ++LSACA GA+ LG
Sbjct: 178 --------SLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSW 229
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ Y C +G++ VF K++E N+ W ++ A HG+
Sbjct: 230 VHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 292 AHEALGMFDRM 302
+A+ +F++M
Sbjct: 290 GQQAVELFNKM 300
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 118/261 (45%), Gaps = 29/261 (11%)
Query: 3 VKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKEL---ECVYATIVKTNANLDC 59
V Y R +++S N P++ +F + +K C+ + L + V+ V + LD
Sbjct: 92 VAYYRRMLSS---NVSPSNYTFTSV------IKSCADLSALRIGKGVHCHAVVSGFGLDT 142
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVL 119
++ ++F S+ ++ VF +M E ++ +++ S F L E +
Sbjct: 143 YVQAALVTF-YSKCGDMEGARQVFDRMPEKSIVAWNSLVS--------GFEQNGLADEAI 193
Query: 120 LTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179
V Q+ ++GF +++ + + V + + E + +I+
Sbjct: 194 --QVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALIN 251
Query: 180 AYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQV 233
Y+R ++ +F+KM ++ +WT MI++Y + ++A++ FNK + G + V
Sbjct: 252 LYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNV 311
Query: 234 TMATVLSACAHLGALDLGRGI 254
T VLSACAH G ++ GR +
Sbjct: 312 TFVAVLSACAHAGLVEEGRSV 332
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
LLF +P D + ++I S S+ + + + + S T +V+ +CA L
Sbjct: 62 LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121
Query: 247 ALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITE 284
AL +G+G+ + C + + VF ++ EK+++ WNS+
Sbjct: 122 ALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVS 181
Query: 285 ALAIHGFAHEALGMFDRMTYENVRPN 310
+G A EA+ +F +M P+
Sbjct: 182 GFEQNGLADEAIQVFYQMRESGFEPD 207
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 153/331 (46%), Gaps = 46/331 (13%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC 69
+ +F +NS V+ + + + + KC++I + ++ +N +L +A ++
Sbjct: 258 VYAFIRNS-GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQG 316
Query: 70 TSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWK 129
+R + +++ ++ + + A SS LR + + HG V +
Sbjct: 317 LTREALGVFNLMMDSGVRPDRISMLSAISSCSQ-----------LRNILWGKSCHGYVLR 365
Query: 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-- 187
NGF S + A++D Y ++ + + R+FD M + TWN+++ Y E+
Sbjct: 366 NGFESWDNICNALIDMYMKCHR----QDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421
Query: 188 ---LFNKMPAWDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACA 243
F MP +I SW T+I+ Q F EA++ F + + G +D VTM ++ SAC
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACG 481
Query: 244 HLGALDLGR---------GIQIYCRSLGRSLL--------------VFFKLREKNLLCWN 280
HLGALDL + GIQ+ R LG +L+ +F L +++ W
Sbjct: 482 HLGALDLAKWIYYYIEKNGIQLDVR-LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 540
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+ A+A+ G A A+ +FD M + ++P+G
Sbjct: 541 AAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 55/220 (25%)
Query: 115 RAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174
RA+ +HG + K G++ +FVQ ++V Y+ + +R+V FDEM ER +W
Sbjct: 148 RAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKV----FDEMSERNVVSW 203
Query: 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQF-REALDAFNK-TKKSGTGSDQ 232
+MI YAR + F ++A+D F + + +
Sbjct: 204 TSMICGYAR---------------------------RDFAKDAVDLFFRMVRDEEVTPNS 236
Query: 233 VTMATVLSACAHLGALDLGR---------GIQI-------------YCRSLGRSLLVFFK 270
VTM V+SACA L L+ G GI++ C ++ + +F +
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
NL N++ G EALG+F+ M VRP+
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-- 257
+ ++I Y+ + EA+ F + SG D+ T LSACA A G GIQI+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRA--KGNGIQIHGL 159
Query: 258 ----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
C L + VF ++ E+N++ W S+ A FA +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 296 LGMFDRMTY-ENVRPN 310
+ +F RM E V PN
Sbjct: 220 VDLFFRMVRDEEVTPN 235
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 176 TMIDAYARLAE-----LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
T++D ++R + +FN + D+ +WT I + + A++ F+ + G
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569
Query: 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290
D V L+AC+H G + G+ I Y S+L + +++ + + + L G
Sbjct: 570 DGVAFVGALTACSHGGLVQQGKEI-FY------SMLKLHGVSPEDVH-YGCMVDLLGRAG 621
Query: 291 FAHEALGMFDRMTYENVRPN 310
EA+ + + M E PN
Sbjct: 622 LLEEAVQLIEDMPME---PN 638
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPA 194
A+VD S +++ LFDEMP+R ++ +MID YA+ ++ LF +
Sbjct: 211 NALVDGLVKSGDLVNAKK----LFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARG 266
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+R+W+ +I Y+QN Q EA F++ D+ M ++SAC+ +G +L +
Sbjct: 267 VDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKV 326
Query: 255 QIY-----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
Y C + R+ +F ++ +++L+ + S+ E +AIHG
Sbjct: 327 DSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGC 386
Query: 292 AHEALGMFDRMTYENVRPN 310
EA+ +F++M E + P+
Sbjct: 387 GSEAIRLFEKMVDEGIVPD 405
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 176 TMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID A+ + LF +MP D+ S+ +M+ + + EA+ F K G
Sbjct: 345 ALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVP 404
Query: 231 DQVTMATVLSACAH 244
D+V +L C
Sbjct: 405 DEVAFTVILKVCGQ 418
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 98/215 (45%), Gaps = 58/215 (26%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH Q+ K+GF V+V ++ Y ++R++FDEMPER +WN+MIDA
Sbjct: 173 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCL----DLARKVFDEMPERSLVSWNSMIDALV 228
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
R E + AL F + ++S D TM +VLSAC
Sbjct: 229 RFGE--------------------------YDSALQLFREMQRSFE-PDGYTMQSVLSAC 261
Query: 243 AHLGALDLGRG-----------------------IQIYCR--SLGRSLLVFFKLREKNLL 277
A LG+L LG I++YC+ SL + VF +++++L
Sbjct: 262 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 321
Query: 278 CWNSITEALAIHGFAHEALGMFDRMT--YENVRPN 310
WN++ A HG A EA+ FDRM ENVRPN
Sbjct: 322 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPN 356
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 175 NTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK--TKKSG 227
N++I+ Y R+AE +F M D+ SW MI ++ + + EA++ F++ K+
Sbjct: 293 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352
Query: 228 TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287
+ VT +L AC H G ++ GR Q + ++V E L + I + +A
Sbjct: 353 VRPNSVTFVGLLIACNHRGFVNKGR--QYF------DMMVRDYCIEPALEHYGCIVDLIA 404
Query: 288 IHGFAHEALGMFDRM 302
G+ EA+ M M
Sbjct: 405 RAGYITEAIDMVMSM 419
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYA------RLAELLFNKM-----PAWDIRSWTTMITSYSQ 209
R+FD + WNT+I A A A +L+ KM + D ++ ++ + +
Sbjct: 104 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 163
Query: 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269
F E + K G G D ++ G LDL R VF
Sbjct: 164 IFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK-------------VFD 210
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
++ E++L+ WNS+ +AL G AL +F M + P+G
Sbjct: 211 EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDG 251
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 139/332 (41%), Gaps = 80/332 (24%)
Query: 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC-TSRFHFIDYTILVFPQMQ 87
+I L+ C+S+K+L +++ ++ + + FC S + + L+F
Sbjct: 7 VIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFD 66
Query: 88 -EPNV----FVYHAFSSLRHPLQAIAFYLYMLRAEV----LLT----------------- 121
+P+ ++ FS+ PL +I FY ML + V L T
Sbjct: 67 SDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKC 126
Query: 122 -TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
+HG V ++GF V T++V YS + S ++ ++FDEMP R +WN MI
Sbjct: 127 LEIHGSVIRSGFLDDAIVATSLVRCYSANG----SVEIASKVFDEMPVRDLVSWNVMICC 182
Query: 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240
++ + L N +AL + + G D T+ +LS
Sbjct: 183 FSHVG--LHN------------------------QALSMYKRMGNEGVCGDSYTLVALLS 216
Query: 241 ACAHLGALDLG--------------------RGIQIY--CRSLGRSLLVFFKLREKNLLC 278
+CAH+ AL++G I +Y C SL ++ VF +R++++L
Sbjct: 217 SCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLT 276
Query: 279 WNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
WNS+ +HG EA+ F +M VRPN
Sbjct: 277 WNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 27/230 (11%)
Query: 34 LKKCSSIKEL-EC--VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C IK + +C ++ +++++ D +A + C S ++ VF +M +
Sbjct: 114 LKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVR-CYSANGSVEIASKVFDEMPVRD 172
Query: 91 VFVYH----AFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146
+ ++ FS + QA++ Y M G + A++ +
Sbjct: 173 LVSWNVMICCFSHVGLHNQALSMYKRM--------------GNEGVCGDSYTLVALLSSC 218
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWT 201
++ + + R D E N +ID YA+ L +FN M D+ +W
Sbjct: 219 AHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWN 278
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251
+MI Y + EA+ F K SG + +T +L C+H G + G
Sbjct: 279 SMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEG 328
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 32/199 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA 194
+M+D Y + +++ LFD MP R TW TMID YA+L A+ LF++MP
Sbjct: 256 NSMIDGYVKHGRIEDAKG----LFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPH 311
Query: 195 WDIRSWTTMITSYSQNKQFREALDAF-NKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253
D+ ++ +M+ Y QNK EAL+ F + K+S D T+ VL A A LG L
Sbjct: 312 RDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 371
Query: 254 IQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291
+ +Y C S+ ++LVF + K++ WN++ LAIHG
Sbjct: 372 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGL 431
Query: 292 AHEALGMFDRMTYENVRPN 310
A M ++ +++P+
Sbjct: 432 GESAFDMLLQIERLSLKPD 450
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 58/192 (30%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + K G S +F+Q ++ Y +SR++FD MP+R ++N+MID Y
Sbjct: 143 IHGFLKKTGLWSDLFLQNCLIGLYLKCGCL----GLSRQMFDRMPKRDSVSYNSMIDGYV 198
Query: 183 RL-----AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
+ A LF+ MP ++ SW +MI+ Y+Q SD V +
Sbjct: 199 KCGLIVSARELFDLMPMEMKNLISWNSMISGYAQT-------------------SDGVDI 239
Query: 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEA 295
A+ L F + EK+L+ WNS+ + HG +A
Sbjct: 240 ASKL----------------------------FADMPEKDLISWNSMIDGYVKHGRIEDA 271
Query: 296 LGMFDRMTYENV 307
G+FD M +V
Sbjct: 272 KGLFDVMPRRDV 283
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR------- 252
W +I S+S K R+AL ++G D+ +++ VL AC+ LG + G
Sbjct: 89 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148
Query: 253 ---------------GIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
G+ + C LG S +F ++ +++ + +NS+ + G A
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARE 208
Query: 298 MFDRMTYE 305
+FD M E
Sbjct: 209 LFDLMPME 216
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 176 TMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230
+ID Y++ A L+F + I W MI + + A D + ++
Sbjct: 390 ALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKP 449
Query: 231 DQVTMATVLSACAHLGALDLG 251
D +T VL+AC+H G + G
Sbjct: 450 DDITFVGVLNACSHSGLVKEG 470
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 38/221 (17%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H Q+ G FV+T++++ YS R ++R+FD+ + WN++++AYA+
Sbjct: 85 HAQILLFGLDKDPFVRTSLLNMYSSCGDL----RSAQRVFDDSGSKDLPAWNSVVNAYAK 140
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN-----KTKKSGTGSDQV 233
A LF++MP ++ SW+ +I Y +++EALD F K ++ ++
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200
Query: 234 TMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKL 271
TM+TVLSAC LGAL+ G+ + Y C SL R+ VF L
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 272 -REKNLLCWNSITEALAIHGFAHEALGMFDRMTY-ENVRPN 310
+K++ ++++ LA++G E +F MT +N+ PN
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPN 301
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 176 TMIDAYARLAEL-----LFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNK-TKKSGT 228
+ID YA+ L +FN + + D+++++ MI + E F++ T
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNI 298
Query: 229 GSDQVTMATVLSACAHLGALDLGR 252
+ VT +L AC H G ++ G+
Sbjct: 299 NPNSVTFVGILGACVHRGLINEGK 322
>sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470
OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
Length = 540
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 33/203 (16%)
Query: 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEM-PERKFATWNTMIDAYARLAEL-----LFN 190
FV+TA++D ++ + +RR+F+E+ +R TWN MI Y R+ ++ LF+
Sbjct: 300 FVKTALLDMHAKCRDI----QSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFD 355
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249
MP ++ SW ++I Y+ N Q A++ F G + D+VTM +VLSAC H+ L+
Sbjct: 356 TMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLE 415
Query: 250 LGRGIQIYCR--------SLGRSLL--------------VFFKLREKNLLCWNSITEALA 287
LG I Y R S RSL+ VF +++E++++ +N++ A A
Sbjct: 416 LGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFA 475
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
+G E L + +M E + P+
Sbjct: 476 ANGDGVETLNLLSKMKDEGIEPD 498
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 121/323 (37%), Gaps = 75/323 (23%)
Query: 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLR 115
+ A + IS CT YT L+F + PNVFV ++ FS + + Y R
Sbjct: 40 YWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSR 99
Query: 116 AEVLLTTV----------------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV- 158
++ V K GF +V+ ++D Y +R+V
Sbjct: 100 CGIMPDAFSFPVVIKSAGRFGILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVF 159
Query: 159 ---SRR-----------------------LFDEMPERKFATWNTMIDAYARLAEL----- 187
S+R LFD MPE +W MI +A++ +L
Sbjct: 160 DQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARK 219
Query: 188 LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247
F++MP + SW M++ Y+QN +AL FN + G ++ T V+SAC+
Sbjct: 220 YFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRAD 279
Query: 248 LDLGRGI----------------------QIYCRSLGRSLLVFFKL-REKNLLCWNSITE 284
L R + CR + + +F +L ++NL+ WN++
Sbjct: 280 PSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMIS 339
Query: 285 ALAIHGFAHEALGMFDRMTYENV 307
G A +FD M NV
Sbjct: 340 GYTRIGDMSSARQLFDTMPKRNV 362
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 172 ATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226
+ + ++I YAR L +F++M D+ S+ T+ T+++ N E L+ +K K
Sbjct: 434 SGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDE 493
Query: 227 GTGSDQVTMATVLSACAHLGALDLGRGI 254
G D+VT +VL+AC G L G+ I
Sbjct: 494 GIEPDRVTYTSVLTACNRAGLLKEGQRI 521
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 146/310 (47%), Gaps = 48/310 (15%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR--FHFIDYTILVFPQMQEPNV 91
+ KC+S++EL + A +K++ F+AK I+FCT + Y +F M EP++
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEAMSEPDI 94
Query: 92 FVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS 147
++++ +S +PL+ + ++ +L +L + ++ P ++ V
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILEDGIL---------PDNYTFPSLLKACAV---- 141
Query: 148 YSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTT 202
+ E R++ + T+I+ Y A +F+++ + +
Sbjct: 142 -AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 200
Query: 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----- 257
MIT Y++ + EAL F + + +++T+ +VLS+CA LG+LDLG+ I Y
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260
Query: 258 -----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
C SL ++ +F K+R K+ W+++ A A HG A +++ MF+
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320
Query: 301 RMTYENVRPN 310
RM ENV+P+
Sbjct: 321 RMRSENVQPD 330
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 35/235 (14%)
Query: 34 LKKCSSIKELE---CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90
LK C+ K LE ++ +K + + ++ I+ T +D VF ++ EP
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYT-ECEDVDSARCVFDRIVEPC 194
Query: 91 VFVYHA----FSSLRHPLQAIAFYL-----YMLRAEVLLTTVHGQVWKNGFSSPVFVQT- 140
V Y+A ++ P +A++ + Y+ E+ L +V SS + +
Sbjct: 195 VVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSV--------LSSCALLGSL 246
Query: 141 ---AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197
+ Y+ + F + +V+ L D FA ++ DA + +F KM D
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALID-----MFAKCGSLDDAVS-----IFEKMRYKDT 296
Query: 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
++W+ MI +Y+ + + +++ F + + D++T +L+AC+H G ++ GR
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ F+++PE+ W+ M+ Y R+ ++ +F ++ A D+ W T+I Y+QN
Sbjct: 196 ARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYS 255
Query: 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG---------RGIQI-------- 256
+A+DAF + G D VT++++LSACA G LD+G RGI++
Sbjct: 256 DDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNAL 315
Query: 257 -----YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
C L + VF + +++ C NS+ LAIHG EAL MF M +++P+
Sbjct: 316 IDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPD 374
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 60/232 (25%)
Query: 118 VLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177
VL +H + K G S V V ++++ Y +R+V FDEMPER ATWN M
Sbjct: 63 VLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKV----FDEMPERNVATWNAM 118
Query: 178 IDAYA-------------------------------------RLAELLFNKMP--AWDIR 198
I Y A LF +MP +++
Sbjct: 119 IGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVK 178
Query: 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258
+W+ M+ Y N++ +A F + + + ++S +G + R I
Sbjct: 179 AWSVMLGVYVNNRKMEDARKFFEDIPE----KNAFVWSLMMSGYFRIGDVHEARAI---- 230
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F+++ ++L+ WN++ A +G++ +A+ F M E P+
Sbjct: 231 ---------FYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPD 273
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 28/196 (14%)
Query: 83 FPQMQEPNVFVYHAFSSLR------HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV 136
F + E N FV+ S H +AI FY R V+ T+ +NG+S
Sbjct: 200 FEDIPEKNAFVWSLMMSGYFRIGDVHEARAI-FYRVFARDLVIWNTLIAGYAQNGYSDDA 258
Query: 137 F----------------VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180
++++ + S + R V + E N +ID
Sbjct: 259 IDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDM 318
Query: 181 YARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235
YA+ +L +F + + +MI+ + + + +EAL+ F+ + D++T
Sbjct: 319 YAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITF 378
Query: 236 ATVLSACAHLGALDLG 251
VL+AC H G L G
Sbjct: 379 IAVLTACVHGGFLMEG 394
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 39/233 (16%)
Query: 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
L A + VHG V K GF + + A++ Y K + + LF ++ + +
Sbjct: 307 LEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKV----KDAEHLFRQIRNKGIES 362
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWD--------IRSWTTMITSYSQNKQFREALDAF 220
WN++I ++ +L LF+++ + + +WT++I + + ++L+ F
Sbjct: 363 WNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYF 422
Query: 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------C 258
+ + S ++ VT+ +LS CA L AL+LGR I + C
Sbjct: 423 RQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKC 482
Query: 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
L LVF +R+K+L+ WNSI + +HGFA +AL MFDRM P+G
Sbjct: 483 GLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDG 535
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 35/214 (16%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H QV + G + V ++ Y + + ++ LF EMP R +WN MI +++
Sbjct: 181 HTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYN----LFVEMPVRNRMSWNVMIKGFSQ 236
Query: 184 -----LAELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234
A +F M + + +WT++++ +SQ +F + L F+ + SG
Sbjct: 237 EYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEA 296
Query: 235 MATVLSACAHLGALDLGRGIQIYCRSLG-------RSLLV---------------FFKLR 272
+A S CA L AL + + Y G R+ L+ F ++R
Sbjct: 297 LAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIR 356
Query: 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
K + WNS+ + G EAL +F + N
Sbjct: 357 NKGIESWNSLITSFVDAGKLDEALSLFSELEEMN 390
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG V + S + VQ A+V+ Y+ E
Sbjct: 456 IHGHVIRTSMSENILVQNALVNMYAKCGLLSE---------------------------- 487
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
L+F + D+ SW ++I Y + +AL F++ SG D + + VLSAC
Sbjct: 488 --GSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSAC 545
Query: 243 AHLGALDLGRGI 254
+H G ++ GR I
Sbjct: 546 SHAGLVEKGREI 557
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 176 TMIDAYARLAELLFNK--------MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
+I YARL LL + + D+R W +++ + + + AL+ + ++ G
Sbjct: 94 NLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRG 153
Query: 228 TGSDQVTMATVLSACAHLGALDLGRG-----IQIYCRS-----------------LGRSL 265
D + +L AC +LG L R IQI + +G +
Sbjct: 154 LTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213
Query: 266 LVFFKLREKNLLCWNSITEALAIHGFAHE-----ALGMFDRMTYENVRPN 310
+F ++ +N + WN + I GF+ E A+ +F+ M E +P+
Sbjct: 214 NLFVEMPVRNRMSWN-----VMIKGFSQEYDCESAVKIFEWMQREEFKPD 258
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 27/184 (14%)
Query: 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYS 208
E +++ LFD MP R +TWNTMI YA+ ++ LF+KMP D SW MI YS
Sbjct: 326 ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS 385
Query: 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ------------- 255
Q+ EAL F + ++ G ++ + ++ LS CA + AL+LG+ +
Sbjct: 386 QSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCF 445
Query: 256 -------IYCR--SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306
+YC+ S+ + +F ++ K+++ WN++ + HGF AL F+ M E
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREG 505
Query: 307 VRPN 310
++P+
Sbjct: 506 LKPD 509
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPA 194
M+ Y + +F ++R+LFDEMPER +WN MI Y R A LF MP
Sbjct: 99 NGMISGYLRNGEF----ELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE 154
Query: 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
D+ SW TM++ Y+QN +A F++ + + V+ +LSA ++
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSVFDRMPE----KNDVSWNALLSAYVQNSKME----- 205
Query: 255 QIYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307
+ FK RE L+ WN + EA FD M +V
Sbjct: 206 ---------EACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDV 250
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 159 SRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQF 213
+R+ FD M R +WNT+I YA+ ++ LF++ P D+ +WT M++ Y QN+
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 214 REALDAFNKTKKSGTGS-----------DQVTMATVL---SACAHLGALDLGRGIQIYCR 259
EA + F+K + S +++ MA L C ++ + C
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ + +F K+ +++ + W ++ + G + EAL +F +M E R N
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 161 RLFDEMPERKFATWNTMIDAYAR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215
R+F MP ++N MI Y R LA LF++MP D+ SW MI Y +N+ +
Sbjct: 85 RVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGK 144
Query: 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275
A + F + D + T+LS A G +D R VF ++ EKN
Sbjct: 145 ARELFEIMPE----RDVCSWNTMLSGYAQNGCVDDARS-------------VFDRMPEKN 187
Query: 276 LLCWNSITEALAIHGFAHEALGMF 299
+ WN++ A + EA +F
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLF 211
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 30/134 (22%)
Query: 119 LLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178
L +HG++ K G+ + FV A++ Y E
Sbjct: 427 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE------------------------ 462
Query: 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A LF +M DI SW TMI YS++ AL F K+ G D TM V
Sbjct: 463 ------ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516
Query: 239 LSACAHLGALDLGR 252
LSAC+H G +D GR
Sbjct: 517 LSACSHTGLVDKGR 530
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI- 254
DI+ W I+SY + + EAL F + + + V+ ++S G +L R +
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSS----VSYNGMISGYLRNGEFELARKLF 118
Query: 255 -----------------QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297
+ R+LG++ +F + E+++ WN++ A +G +A
Sbjct: 119 DEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS 178
Query: 298 MFDRMTYEN 306
+FDRM +N
Sbjct: 179 VFDRMPEKN 187
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HGQ K GF FVQT+ V Y SR++FD++ N+++DA
Sbjct: 108 LHGQALKRGFLWDPFVQTSFVRFYGEVGDL----ESSRKMFDDILNPCVVACNSLLDACG 163
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN---KTKKSGTGSDQVT 234
R E+ F +MP D+ SWTT+I +S+ +AL F + +++ ++ T
Sbjct: 164 RNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEAT 223
Query: 235 MATVLSACAHL--GALDLGRGIQIYCRS----------------------LGRSLLVFFK 270
+VLS+CA+ G + LG+ I Y S L +L +F +
Sbjct: 224 FVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQ 283
Query: 271 LREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
+R+K + WN+I ALA +G +AL MF+ M V PNG
Sbjct: 284 IRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNG 324
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 179 DAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233
D Y + +L +F+++ + +W +I++ + N + ++AL+ F K S + +
Sbjct: 266 DMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGI 325
Query: 234 TMATVLSACAHLGALDLGRGIQIY 257
T+ +L+ACA +DL GIQ++
Sbjct: 326 TLLAILTACARSKLVDL--GIQLF 347
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 62/289 (21%)
Query: 79 TILVFPQMQEPNV--------FVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV------- 123
T+ ++ +M++ V FV A S L AF+ ++R +L
Sbjct: 96 TVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALIL 155
Query: 124 -HGQVWKNGFSSPVFVQTA---------MVDNYSYSNKFFESRRVSRRLFDEMPERKFAT 173
H G +S +F +A M Y+ K E+ R LFDEMP +
Sbjct: 156 FHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMR----LFDEMPYKDQVA 211
Query: 174 WNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228
WN MI + E+ LF++ D+ +W MI+ Y +EAL F + + +G
Sbjct: 212 WNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGE 271
Query: 229 GSDQVTMATVLSACAHLGALDLGRGIQIY---------------------------CRSL 261
D VT+ ++LSACA LG L+ G+ + IY C S+
Sbjct: 272 HPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSI 331
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
R++ VF +++++L WN++ LA+H A ++ MF+ M V PN
Sbjct: 332 DRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPN 379
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
E+ VS ++ P WN +ID YA+ + +F + D+ +W T+I
Sbjct: 301 ILETASVSSSIYVGTP-----IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVG 355
Query: 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252
+ + +++ F + ++ ++VT V+ AC+H G +D GR
Sbjct: 356 LALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGR 400
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
HGQV GF S V + +++D Y+ + ++R FDEM + W T+I YA+
Sbjct: 202 HGQVLVAGFLSNVVLSCSIIDAYAKCGQM----ESAKRCFDEMTVKDIHIWTTLISGYAK 257
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
L AE LF +MP + SWT +I Y + ALD F K G +Q T ++
Sbjct: 258 LGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSC 317
Query: 239 LSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREK-N 275
L A A + +L G+ I Y SL S VF +K +
Sbjct: 318 LCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHD 377
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ WN++ ALA HG H+AL M D M V+PN
Sbjct: 378 CVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPN 412
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 123 VHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181
+H + GF P + ++ Y K ++ +V FD+M R +WN M+ Y
Sbjct: 68 IHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKV----FDQMHLRNLYSWNNMVSGY 123
Query: 182 AR-----LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA 236
+ A ++F+ MP D+ SW TM+ Y+Q+ EAL + + ++SG ++ + A
Sbjct: 124 VKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFA 183
Query: 237 TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296
+L+AC L L R ++ G+ L+ F N++ SI +A A G A
Sbjct: 184 GLLTACVKSRQLQLNR------QAHGQVLVAGFL---SNVVLSCSIIDAYAKCGQMESAK 234
Query: 297 GMFDRMTYENV 307
FD MT +++
Sbjct: 235 RCFDEMTVKDI 245
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 29/129 (22%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+HG + + V ++++D YS S S RV R D+
Sbjct: 333 IHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKH---------------- 376
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
D W TMI++ +Q+ +AL + K ++ T+ +L+AC
Sbjct: 377 -------------DCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNAC 423
Query: 243 AHLGALDLG 251
+H G ++ G
Sbjct: 424 SHSGLVEEG 432
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 158/370 (42%), Gaps = 80/370 (21%)
Query: 10 ITSFKKNSFPTSVSFIRIHIIANQ-----LKKCSS----IKELECVYATIVKTNANLDCF 60
++S K F S IR + ++ L K SS +K++ C IV +L +
Sbjct: 110 VSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHC--HIIVSGCLSLGNY 167
Query: 61 LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYH----AFSSLRHPLQAIAFYLYMLRA 116
L + F +F VF +M P+V ++ ++ L+A+ Y M+
Sbjct: 168 LWNSLVKFYMELGNF-GVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSD 226
Query: 117 EV---------------------LLTTVHGQVWKNG--FSSPVFVQTAMVDNYSYSNKFF 153
+ L VHG + + G +SS + + A++D Y F
Sbjct: 227 GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMY------F 280
Query: 154 ESRR--VSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITS 206
+ + +++R FD M ++ +WNTM+ + RL ++ +F++MP D+ SW +++
Sbjct: 281 KCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFG 340
Query: 207 YSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG--------- 253
YS+ + RE + T D+VTM +++S A+ G L GR
Sbjct: 341 YSKKGCDQRTVRELF--YEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQ 398
Query: 254 -----------IQIYCRS--LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300
I +YC+ + R+ +VF EK++ W S+ LA HG +AL +F
Sbjct: 399 LKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFG 458
Query: 301 RMTYENVRPN 310
RM E V PN
Sbjct: 459 RMQEEGVTPN 468
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 85/325 (26%)
Query: 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRF-HFIDYTILVFPQM-QEPNV 91
L+ C+S + + V A I++ N D F + I F + +D L+F PNV
Sbjct: 41 LENCNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNV 100
Query: 92 FVYHAF----------------SSLRHPLQAI-AFYLYMLRAEVLLTTV---HGQVWKNG 131
FVY+ S +RH + +LY+++A L+ V H + +G
Sbjct: 101 FVYNTMISAVSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHCHIIVSG 160
Query: 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AE 186
S + NY WN+++ Y L AE
Sbjct: 161 CLS--------LGNY--------------------------LWNSLVKFYMELGNFGVAE 186
Query: 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246
+F +MP D+ S+ MI Y++ EAL + K G D+ T+ ++L C HL
Sbjct: 187 KVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLS 246
Query: 247 ALDLGRGIQIY------------------------CRSLGRSLLVFFKLREKNLLCWNSI 282
+ LG+G+ + C+ G + F +++K++ WN++
Sbjct: 247 DIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTM 306
Query: 283 TEALAIHGFAHEALGMFDRMTYENV 307
G A +FD+M ++
Sbjct: 307 VVGFVRLGDMEAAQAVFDQMPKRDL 331
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
+ +ID Y + A ++F D+ WT+MIT + + ++AL F + ++ G
Sbjct: 407 SALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVT 466
Query: 230 SDQVTMATVLSACAHLGALDLG 251
+ VT+ VL+AC+H G ++ G
Sbjct: 467 PNNVTLLAVLTACSHSGLVEEG 488
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 125/274 (45%), Gaps = 53/274 (19%)
Query: 72 RFHFIDYTILVFPQMQEPNVF--------VYHAFSSLRHPLQAIAFYLYMLRAEVLLTTV 123
RF +D +F +M++ NV + A + A Y +++ +V + T
Sbjct: 189 RFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDT- 247
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
+ TA+V Y+ + ++R F +M R M+ Y++
Sbjct: 248 -------------HLLTALVTMYAGAG----CMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238
A+++F++ D+ WTTMI++Y ++ +EAL F + SG D V+M +V
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 239 LSACAHLGALDLGRG--------------------IQIY--CRSLGRSLLVFFKLREKNL 276
+SACA+LG LD + I +Y C L + VF K+ +N+
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410
Query: 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ W+S+ AL++HG A +AL +F RM ENV PN
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPN 444
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 140/351 (39%), Gaps = 66/351 (18%)
Query: 17 SFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKT--NANLDCFLAKQFISFCTSRFH 74
+ P ++ + I +L C S+ ++ ++A I++T N L+ FL F +S
Sbjct: 2 TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFL---FNLSVSSSSI 58
Query: 75 FIDYTILVFPQM-QEPNVFVYHAF----SSLRHPLQAIAFY---------------LYML 114
+ Y + VF + P V++ F S P I FY L +L
Sbjct: 59 NLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPIL 118
Query: 115 RAEVLLTTV------HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168
+A ++ + HG +K FV+T +D Y+ + +R +FDEM
Sbjct: 119 KAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRI----NYARNVFDEMSH 174
Query: 169 RKFATWNTMIDAYARLAEL-----LF------NKMPAWDIRSWTTMITSYSQNKQFREAL 217
R TWNTMI+ Y R + LF N MP I + N ++ A+
Sbjct: 175 RDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAI 234
Query: 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG----------------IQIY--CR 259
F ++ D + +++ A G +D+ R + Y C
Sbjct: 235 YEF--LIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCG 292
Query: 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L + ++F + +K+L+CW ++ A + EAL +F+ M ++P+
Sbjct: 293 RLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPD 343
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 168 ERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222
E + + N +I+ YA+ L +F KMP ++ SW++MI + S + + +AL F +
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFAR 435
Query: 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254
K+ ++VT VL C+H G ++ G+ I
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKI 467
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 58/252 (23%)
Query: 82 VFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141
+F +M+E V V PL + YL++ R ++HGQ K G S V V +
Sbjct: 143 MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGR------SLHGQCVKGGLDSEVAVLNS 196
Query: 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWT 201
+ Y S RRLFDEMP + TWN
Sbjct: 197 FITMYMKCG----SVEAGRRLFDEMPVKGLITWN-------------------------- 226
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR--------- 252
+I+ YSQN + L+ + + K SG D T+ +VLS+CAHLGA +G
Sbjct: 227 AVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESN 286
Query: 253 -----------GIQIY--CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299
I +Y C +L ++ VF + K+L+ W ++ +HG L +F
Sbjct: 287 GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLF 346
Query: 300 DRMTYENVRPNG 311
D M +RP+G
Sbjct: 347 DDMIKRGIRPDG 358
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N I YAR L +F+ MP + SWT MI Y + L F+ K G
Sbjct: 296 NASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIR 355
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289
D VLSAC+H G D +G++++ R++ R +KL E ++ + + L
Sbjct: 356 PDGAVFVMVLSACSHSGLTD--KGLELF-RAMKRE----YKL-EPGPEHYSCLVDLLGRA 407
Query: 290 GFAHEALGMFDRMTYENVRPNG 311
G EA+ + M E P+G
Sbjct: 408 GRLDEAMEFIESMPVE---PDG 426
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 50/210 (23%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
+H V K G + FV TA++ Y ++R+V F+E P+ +
Sbjct: 75 LHCHVTKGGCETEPFVLTALISMYCKCGLVADARKV----FEENPQSSQLSV-------- 122
Query: 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242
+ +I+ Y+ N + +A F + K++G D VTM ++ C
Sbjct: 123 ----------------CYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLC 166
Query: 243 AHLGALDLGRGIQ----------------------IYCRSLGRSLLVFFKLREKNLLCWN 280
L LGR + + C S+ +F ++ K L+ WN
Sbjct: 167 TVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWN 226
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + +G A++ L ++++M V P+
Sbjct: 227 AVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182
VH + KNG+SS V + +++ Y+ SR + R + + +WN++IDA
Sbjct: 227 VHAVMLKNGWSSAVEAKNSVLSFYTK----LGSRDDAMRELESIEVLTQVSWNSIIDACM 282
Query: 183 RLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237
++ E +F+ P +I +WTTMIT Y +N +AL F + KSG SD
Sbjct: 283 KIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGA 342
Query: 238 VLSACAHLGALDLGR---------GIQIY-------------CRSLGRSLLVFFKLREKN 275
VL AC+ L L G+ G Q Y C + + F + K+
Sbjct: 343 VLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKD 402
Query: 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
L+ WN++ A +HG A +AL ++D M ++P+
Sbjct: 403 LVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPD 437
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244
A +F+ MP D +W TM+TSYS+ +EA+ F + + S D + +LS CA
Sbjct: 23 ARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCAS 82
Query: 245 LGALDLGRGIQ 255
LG + GR IQ
Sbjct: 83 LGNVKFGRKIQ 93
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +++ YA+ ++ F + D+ SW TM+ ++ + +AL ++ SG
Sbjct: 376 NALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIK 435
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D VT +L+ C+H G ++ G
Sbjct: 436 PDNVTFIGLLTTCSHSGLVEEG 457
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Query: 71 SRFHFIDYTILVFPQMQ----EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126
SR I +F Q++ +P+ + + A S L + F +
Sbjct: 46 SRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCASLGNVKFG----------RKIQSL 95
Query: 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186
V ++GF + + V +++D Y + + +V R + + R TW +++ AY +
Sbjct: 96 VIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCD--SRNEVTWCSLLFAYMNAEQ 153
Query: 187 L-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241
+F +MP +W MI+ ++ + L F + +S D T +++++A
Sbjct: 154 FEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNA 213
Query: 242 CA 243
C+
Sbjct: 214 CS 215
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL- 187
K GF S V+VQTA+V Y ++ +V FDEMPER TWN MI L +
Sbjct: 151 KLGFESHVYVQTALVGMYLVGGNMIDAHKV----FDEMPERNPVTWNVMITGLTNLGDFE 206
Query: 188 ----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-TKKSGTGSDQVTMATVLSAC 242
KMP + SWTT+I Y++ + +EA+ F++ +++T+ +L A
Sbjct: 207 KALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAV 266
Query: 243 AHLGALDLGRGIQIY-----------------------CRSLGRSLLVFFKLR--EKNLL 277
+LG L + + Y C + + F ++ KNL+
Sbjct: 267 WNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLV 326
Query: 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
W ++ A AIHG EA+ MF M ++PN
Sbjct: 327 SWTTMISAFAIHGMGKEAVSMFKDMERLGLKPN 359
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227
N++IDAYA+ + F ++P ++ SWTTMI++++ + +EA+ F ++ G
Sbjct: 296 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 355
Query: 228 TGSDQVTMATVLSACAHLG 246
++VTM +VL+AC+H G
Sbjct: 356 LKPNRVTMISVLNACSHGG 374
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 27/163 (16%)
Query: 175 NTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
++++D Y + A+ +F++MP+ ++ +WT +I Y Q++ F + + F + KS
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303
Query: 230 SDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLV 267
++ T+++VLSACAH+GAL GR + Y C L ++LV
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363
Query: 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
F +L EKN+ W ++ A HG+A +A +F M +V PN
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 53/210 (25%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H + K G S FV+ +++ YS S F + RLFD ++ TW MID + R
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLF----DFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N EA+ F + KK+G ++++T+ +VL A
Sbjct: 182 --------------------------NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAG 215
Query: 244 HLGALDLGRGIQ-IYCRS--------LGRSLL--------------VFFKLREKNLLCWN 280
+ + GR + +Y + +G SL+ VF ++ +N++ W
Sbjct: 216 KVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWT 275
Query: 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310
++ + + +F+ M +V PN
Sbjct: 276 ALIAGYVQSRCFDKGMLVFEEMLKSDVAPN 305
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 13/164 (7%)
Query: 147 SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWT 201
++ RRV + E T+ID Y + A L+F ++ ++ +WT
Sbjct: 317 AHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWT 376
Query: 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL 261
MI ++ + R+A D F S ++VT VLSACAH G ++ GR +++
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR--RLFLSMK 434
Query: 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305
GR F + E + + + G EA + +RM E
Sbjct: 435 GR-----FNM-EPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 33/203 (16%)
Query: 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAEL-----LFN 190
V + AM+D + S +RR LFDEM + TW TMI Y + ++ LF+
Sbjct: 176 VVIYNAMMDGFVKSGDMTSARR----LFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFD 231
Query: 191 KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALD 249
MP ++ SW TMI Y QNKQ +E + F + + + + D VT+ +VL A + GAL
Sbjct: 232 AMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALS 291
Query: 250 LGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALA 287
LG + C + ++ +F ++ EK + WN++ A
Sbjct: 292 LGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYA 351
Query: 288 IHGFAHEALGMFDRMTYENVRPN 310
++G A AL +F M E +P+
Sbjct: 352 LNGNARAALDLFVTMMIEE-KPD 373
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 43/188 (22%)
Query: 124 HGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183
H V + V V TA++D YS + +++R+ FDEMPE++ A+WN MI YA
Sbjct: 297 HCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRI----FDEMPEKQVASWNAMIHGYAL 352
Query: 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243
N R ALD F T D++TM V++AC
Sbjct: 353 --------------------------NGNARAALDLF-VTMMIEEKPDEITMLAVITACN 385
Query: 244 HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303
H G ++ GR R +G + + + + + L G EA + M
Sbjct: 386 HGGLVEEGRKWFHVMREMGLNAKIEH---------YGCMVDLLGRAGSLKEAEDLITNMP 436
Query: 304 YENVRPNG 311
+E PNG
Sbjct: 437 FE---PNG 441
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 80/341 (23%)
Query: 17 SFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFI 76
+ P++ S ++ I + ++ L+ ++ +++ + + D FL + T F
Sbjct: 5 TVPSATS--KVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKR-TLFFRQT 61
Query: 77 DYTILVFPQMQEPNVFVYHA-----------------FSSLR-HPLQAIAF-YLYMLRA- 116
Y+ L+F Q PN+F+Y++ F S+R H L F + +L+A
Sbjct: 62 KYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKAC 121
Query: 117 -----EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171
L +H V K GF+ V T+++ YS S + ++ + LFDE+P+R
Sbjct: 122 TRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHK----LFDEIPDRSV 177
Query: 172 ATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231
T WT + + Y+ + + REA+D F K + G D
Sbjct: 178 VT--------------------------WTALFSGYTTSGRHREAIDLFKKMVEMGVKPD 211
Query: 232 QVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFF 269
+ VLSAC H+G LD G I Y C + ++ VF
Sbjct: 212 SYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 271
Query: 270 KLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310
+ EK+++ W+++ + A + F E + +F +M EN++P+
Sbjct: 272 SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 28/174 (16%)
Query: 165 EMPERKFATWNTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219
EM + F T+++ YA+ ++ +F+ M DI +W+TMI Y+ N +E ++
Sbjct: 242 EMQKNSFVR-TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIEL 300
Query: 220 FNKTKKSGTGSDQVTMATVLSACAHLGALDLGR-GIQIY--------------------- 257
F + + DQ ++ LS+CA LGALDLG GI +
Sbjct: 301 FLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAK 360
Query: 258 CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311
C ++ R VF +++EK+++ N+ LA +G + +F + + P+G
Sbjct: 361 CGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 175 NTMIDAYARLAEL-----LFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229
N +ID YA+ + +F +M DI I+ ++N + + F +T+K G
Sbjct: 352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411
Query: 230 SDQVTMATVLSACAHLGALDLG 251
D T +L C H G + G
Sbjct: 412 PDGSTFLGLLCGCVHAGLIQDG 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,734,208
Number of Sequences: 539616
Number of extensions: 4035230
Number of successful extensions: 13826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 10990
Number of HSP's gapped (non-prelim): 1429
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)