Query 044412
Match_columns 311
No_of_seqs 204 out of 2116
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4.3E-46 9.4E-51 353.5 28.6 278 28-310 124-461 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 4.9E-46 1.1E-50 360.7 29.1 277 28-311 188-589 (857)
3 PLN03218 maturation of RBCL 1; 100.0 9.1E-45 2E-49 349.4 29.2 283 27-310 440-788 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 1.7E-44 3.7E-49 342.6 25.3 261 44-309 244-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 6.1E-44 1.3E-48 343.7 27.7 250 57-311 435-754 (1060)
6 PLN03077 Protein ECB2; Provisi 100.0 5.9E-44 1.3E-48 346.2 27.8 301 5-310 255-624 (857)
7 PRK11788 tetratricopeptide rep 99.7 1.4E-14 3.1E-19 129.1 23.1 261 34-311 45-353 (389)
8 PF13041 PPR_2: PPR repeat fam 99.6 9.6E-16 2.1E-20 94.3 6.8 50 195-244 1-50 (50)
9 TIGR02917 PEP_TPR_lipo putativ 99.5 3E-12 6.5E-17 125.4 25.8 267 28-303 571-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.5 3.2E-12 6.9E-17 125.2 24.9 167 133-304 598-798 (899)
11 PRK11788 tetratricopeptide rep 99.5 9.5E-12 2.1E-16 110.9 20.5 219 71-305 46-311 (389)
12 KOG4422 Uncharacterized conser 99.4 7E-11 1.5E-15 100.8 19.1 251 35-307 126-464 (625)
13 KOG4422 Uncharacterized conser 99.2 6.8E-10 1.5E-14 94.9 16.6 120 127-250 198-330 (625)
14 PF13041 PPR_2: PPR repeat fam 99.1 7.5E-11 1.6E-15 72.3 4.2 45 134-182 1-49 (50)
15 PRK15174 Vi polysaccharide exp 99.1 5.4E-08 1.2E-12 92.3 24.9 107 196-304 245-380 (656)
16 PRK15174 Vi polysaccharide exp 99.1 8.3E-08 1.8E-12 91.0 24.8 259 27-305 45-347 (656)
17 TIGR00990 3a0801s09 mitochondr 99.0 3.7E-08 8.1E-13 93.1 19.1 234 38-304 308-570 (615)
18 KOG4318 Bicoid mRNA stability 98.9 1.2E-08 2.6E-13 94.3 11.8 185 116-310 5-238 (1088)
19 PF12854 PPR_1: PPR repeat 98.9 1.9E-09 4.1E-14 59.8 3.8 31 194-224 4-34 (34)
20 PF12854 PPR_1: PPR repeat 98.9 1.4E-09 3E-14 60.4 2.7 34 130-167 1-34 (34)
21 PRK11447 cellulose synthase su 98.9 2.1E-06 4.5E-11 87.0 26.8 262 28-310 389-746 (1157)
22 PRK10747 putative protoheme IX 98.8 9E-07 1.9E-11 79.1 21.0 240 38-303 98-388 (398)
23 PF13429 TPR_15: Tetratricopep 98.8 2.6E-08 5.7E-13 84.7 9.4 105 196-302 145-274 (280)
24 COG2956 Predicted N-acetylgluc 98.8 1.1E-06 2.4E-11 73.0 17.6 248 38-308 49-350 (389)
25 PRK14574 hmsH outer membrane p 98.8 1.1E-05 2.3E-10 77.8 26.9 80 35-116 45-131 (822)
26 TIGR00756 PPR pentatricopeptid 98.8 1.5E-08 3.3E-13 56.8 4.7 35 277-311 1-35 (35)
27 TIGR00756 PPR pentatricopeptid 98.7 1.8E-08 3.9E-13 56.5 4.4 35 198-232 1-35 (35)
28 KOG4318 Bicoid mRNA stability 98.7 5.4E-07 1.2E-11 83.8 16.2 84 44-154 10-101 (1088)
29 TIGR02521 type_IV_pilW type IV 98.7 1.1E-06 2.3E-11 71.9 16.1 195 58-304 30-231 (234)
30 PF13429 TPR_15: Tetratricopep 98.7 6.1E-08 1.3E-12 82.5 8.8 196 64-304 13-242 (280)
31 PF13812 PPR_3: Pentatricopept 98.7 3.2E-08 7E-13 55.1 4.4 34 276-309 1-34 (34)
32 PRK11447 cellulose synthase su 98.7 1.2E-05 2.6E-10 81.5 25.4 176 32-225 277-523 (1157)
33 TIGR00540 hemY_coli hemY prote 98.7 1.2E-05 2.6E-10 72.2 22.6 247 36-302 96-396 (409)
34 KOG1840 Kinesin light chain [C 98.7 1.5E-05 3.2E-10 72.2 22.5 232 60-303 200-477 (508)
35 PF13812 PPR_3: Pentatricopept 98.7 4.4E-08 9.6E-13 54.5 4.2 33 198-230 2-34 (34)
36 PRK10049 pgaA outer membrane p 98.6 3.1E-05 6.7E-10 75.2 25.4 87 28-116 53-145 (765)
37 TIGR00990 3a0801s09 mitochondr 98.6 1.3E-05 2.9E-10 75.9 22.1 268 33-304 136-495 (615)
38 PRK09782 bacteriophage N4 rece 98.6 1.2E-05 2.5E-10 79.1 21.7 215 58-304 476-705 (987)
39 PRK10049 pgaA outer membrane p 98.6 3.3E-05 7.1E-10 75.0 24.5 278 19-305 80-456 (765)
40 PRK14574 hmsH outer membrane p 98.5 0.00013 2.7E-09 70.6 26.7 288 9-304 87-512 (822)
41 TIGR00540 hemY_coli hemY prote 98.5 3.3E-05 7.2E-10 69.4 21.7 225 29-257 123-395 (409)
42 TIGR02521 type_IV_pilW type IV 98.5 7.4E-06 1.6E-10 66.8 15.1 185 28-255 35-226 (234)
43 KOG4626 O-linked N-acetylgluco 98.5 5.8E-06 1.3E-10 74.5 14.7 269 27-304 119-450 (966)
44 PRK10747 putative protoheme IX 98.5 1.7E-05 3.7E-10 70.9 18.1 212 35-257 129-386 (398)
45 PF01535 PPR: PPR repeat; Int 98.5 2.3E-07 5E-12 50.3 3.4 31 198-228 1-31 (31)
46 KOG4626 O-linked N-acetylgluco 98.4 2.4E-05 5.2E-10 70.6 17.2 212 61-310 254-488 (966)
47 PF01535 PPR: PPR repeat; Int 98.4 3.5E-07 7.5E-12 49.6 3.6 31 277-307 1-31 (31)
48 KOG1155 Anaphase-promoting com 98.3 0.00012 2.6E-09 64.0 18.4 201 38-257 241-491 (559)
49 PRK09782 bacteriophage N4 rece 98.3 5E-05 1.1E-09 74.8 17.2 207 28-257 481-702 (987)
50 KOG1126 DNA-binding cell divis 98.3 1.8E-05 3.9E-10 71.8 12.6 222 60-304 354-619 (638)
51 COG3071 HemY Uncharacterized e 98.3 0.00047 1E-08 59.2 20.3 248 38-310 98-395 (400)
52 KOG1070 rRNA processing protei 98.2 9.8E-05 2.1E-09 72.3 16.7 176 133-309 1454-1667(1710)
53 COG2956 Predicted N-acetylgluc 98.2 0.00016 3.5E-09 60.5 15.9 189 73-305 48-278 (389)
54 KOG1126 DNA-binding cell divis 98.2 4.9E-05 1.1E-09 69.0 13.0 167 137-310 354-589 (638)
55 KOG1129 TPR repeat-containing 98.1 0.00013 2.8E-09 61.1 12.8 187 97-304 233-457 (478)
56 PRK12370 invasion protein regu 98.0 0.00022 4.8E-09 66.7 15.7 185 41-246 278-489 (553)
57 PF04733 Coatomer_E: Coatomer 98.0 0.00017 3.7E-09 61.4 12.7 189 56-304 63-264 (290)
58 PF12569 NARP1: NMDA receptor- 97.9 0.0039 8.5E-08 57.3 20.9 97 199-307 196-293 (517)
59 PRK11189 lipoprotein NlpI; Pro 97.9 0.00074 1.6E-08 57.9 15.3 182 97-306 74-266 (296)
60 KOG2003 TPR repeat-containing 97.9 0.0021 4.5E-08 56.4 17.3 175 97-304 500-688 (840)
61 PF04733 Coatomer_E: Coatomer 97.9 0.00027 5.9E-09 60.2 11.8 143 67-254 110-258 (290)
62 COG3071 HemY Uncharacterized e 97.8 0.0035 7.6E-08 54.0 17.7 215 38-256 132-385 (400)
63 KOG2076 RNA polymerase III tra 97.8 0.0099 2.2E-07 56.4 21.4 228 27-257 176-474 (895)
64 PRK12370 invasion protein regu 97.7 0.002 4.4E-08 60.3 16.2 211 58-304 255-501 (553)
65 KOG2002 TPR-containing nuclear 97.7 0.025 5.4E-07 54.3 22.6 178 29-224 275-479 (1018)
66 KOG1840 Kinesin light chain [C 97.7 0.0017 3.7E-08 59.2 14.7 196 29-257 246-475 (508)
67 KOG2047 mRNA splicing factor [ 97.7 0.022 4.7E-07 52.4 20.9 268 31-306 109-507 (835)
68 KOG2076 RNA polymerase III tra 97.6 0.03 6.6E-07 53.3 22.2 122 29-167 144-272 (895)
69 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.8E-08 46.6 9.9 86 199-289 27-117 (120)
70 PF06239 ECSIT: Evolutionarily 97.6 0.00023 5E-09 56.5 6.8 90 133-248 44-154 (228)
71 KOG0495 HAT repeat protein [RN 97.5 0.073 1.6E-06 49.3 23.0 167 135-304 583-781 (913)
72 KOG1174 Anaphase-promoting com 97.4 0.052 1.1E-06 47.5 19.3 86 28-114 198-293 (564)
73 PRK15359 type III secretion sy 97.4 0.0034 7.4E-08 47.6 11.2 97 197-304 24-120 (144)
74 KOG2003 TPR repeat-containing 97.4 0.0035 7.7E-08 55.0 11.5 207 34-249 466-711 (840)
75 KOG3616 Selective LIM binding 97.4 0.0093 2E-07 55.6 14.6 64 185-257 751-816 (1636)
76 PF08579 RPM2: Mitochondrial r 97.3 0.0014 3E-08 46.5 7.3 79 141-244 30-116 (120)
77 KOG3081 Vesicle coat complex C 97.3 0.011 2.4E-07 48.5 13.1 125 97-246 118-255 (299)
78 PF06239 ECSIT: Evolutionarily 97.3 0.005 1.1E-07 49.1 10.9 104 187-292 35-154 (228)
79 cd05804 StaR_like StaR_like; a 97.3 0.11 2.3E-06 45.7 23.2 222 34-304 53-292 (355)
80 KOG2047 mRNA splicing factor [ 97.3 0.12 2.6E-06 47.8 20.5 225 60-293 388-711 (835)
81 KOG1129 TPR repeat-containing 97.2 0.0034 7.4E-08 52.9 9.9 201 36-256 235-453 (478)
82 KOG0985 Vesicle coat protein c 97.2 0.087 1.9E-06 51.2 19.8 183 44-257 967-1191(1666)
83 cd05804 StaR_like StaR_like; a 97.2 0.041 9E-07 48.3 17.1 93 202-303 119-213 (355)
84 KOG2002 TPR-containing nuclear 97.1 0.029 6.3E-07 53.8 15.9 263 28-303 418-743 (1018)
85 COG3063 PilF Tfp pilus assembl 97.1 0.047 1E-06 44.0 14.7 118 97-257 45-164 (250)
86 KOG3081 Vesicle coat complex C 97.1 0.033 7.2E-07 45.8 13.7 126 127-257 99-232 (299)
87 KOG1155 Anaphase-promoting com 97.1 0.031 6.8E-07 49.5 14.5 192 97-303 272-493 (559)
88 PF10037 MRP-S27: Mitochondria 97.1 0.0037 8E-08 55.7 9.0 82 199-289 105-186 (429)
89 TIGR02552 LcrH_SycD type III s 97.0 0.011 2.4E-07 43.9 10.4 99 196-305 16-114 (135)
90 PRK11189 lipoprotein NlpI; Pro 97.0 0.059 1.3E-06 46.2 15.8 78 35-114 75-159 (296)
91 PF10037 MRP-S27: Mitochondria 97.0 0.0057 1.2E-07 54.5 9.5 117 53-184 60-186 (429)
92 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.016 3.5E-07 51.4 12.2 105 185-303 188-295 (395)
93 cd00189 TPR Tetratricopeptide 97.0 0.0097 2.1E-07 40.2 9.0 95 199-304 2-96 (100)
94 KOG1915 Cell cycle control pro 97.0 0.25 5.4E-06 44.2 20.5 82 29-113 146-233 (677)
95 PF05843 Suf: Suppressor of fo 97.0 0.0017 3.7E-08 55.2 5.8 139 60-242 2-150 (280)
96 TIGR03302 OM_YfiO outer membra 97.0 0.041 8.9E-07 45.3 13.9 166 97-305 43-232 (235)
97 KOG1174 Anaphase-promoting com 97.0 0.11 2.4E-06 45.6 16.3 210 27-257 269-496 (564)
98 PRK15359 type III secretion sy 96.9 0.0085 1.9E-07 45.4 8.9 94 135-256 23-116 (144)
99 PRK15179 Vi polysaccharide bio 96.9 0.024 5.3E-07 54.2 13.7 115 97-257 96-213 (694)
100 PF12921 ATP13: Mitochondrial 96.8 0.016 3.5E-07 42.6 9.2 103 135-248 1-104 (126)
101 COG3063 PilF Tfp pilus assembl 96.7 0.098 2.1E-06 42.2 13.5 177 34-253 45-228 (250)
102 KOG1173 Anaphase-promoting com 96.7 0.12 2.6E-06 47.0 15.4 114 185-310 399-521 (611)
103 PF12895 Apc3: Anaphase-promot 96.7 0.0071 1.5E-07 41.1 6.3 81 210-301 2-83 (84)
104 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.054 1.2E-06 38.9 11.3 96 199-305 4-105 (119)
105 KOG0547 Translocase of outer m 96.6 0.21 4.4E-06 44.8 16.0 159 139-302 363-563 (606)
106 COG4783 Putative Zn-dependent 96.6 0.48 1E-05 42.5 20.4 128 97-268 316-448 (484)
107 KOG1070 rRNA processing protei 96.6 0.1 2.3E-06 52.3 15.4 179 60-257 1459-1659(1710)
108 TIGR03302 OM_YfiO outer membra 96.6 0.041 8.8E-07 45.3 11.5 170 57-256 31-227 (235)
109 PF12569 NARP1: NMDA receptor- 96.6 0.096 2.1E-06 48.4 14.6 199 71-305 15-257 (517)
110 COG5010 TadD Flp pilus assembl 96.6 0.21 4.6E-06 41.0 14.8 162 52-257 59-227 (257)
111 KOG3616 Selective LIM binding 96.6 0.021 4.5E-07 53.4 10.0 72 199-272 793-864 (1636)
112 COG5010 TadD Flp pilus assembl 96.6 0.076 1.6E-06 43.5 12.2 150 97-300 76-226 (257)
113 KOG1915 Cell cycle control pro 96.5 0.2 4.3E-06 44.8 15.2 105 39-165 88-199 (677)
114 KOG3617 WD40 and TPR repeat-co 96.5 0.074 1.6E-06 50.5 13.2 171 57-262 755-968 (1416)
115 KOG1128 Uncharacterized conser 96.5 0.034 7.4E-07 51.8 10.7 66 10-85 383-449 (777)
116 TIGR02552 LcrH_SycD type III s 96.5 0.021 4.5E-07 42.4 8.0 30 196-225 84-113 (135)
117 KOG1128 Uncharacterized conser 96.4 0.063 1.4E-06 50.1 12.0 156 137-308 399-585 (777)
118 PF09295 ChAPs: ChAPs (Chs5p-A 96.4 0.026 5.5E-07 50.1 9.1 117 27-168 172-296 (395)
119 PRK10370 formate-dependent nit 96.4 0.093 2E-06 42.1 11.6 96 195-305 71-173 (198)
120 PRK10370 formate-dependent nit 96.3 0.23 5.1E-06 39.8 13.7 142 65-255 22-167 (198)
121 PF09976 TPR_21: Tetratricopep 96.3 0.16 3.4E-06 38.4 11.9 116 173-301 14-143 (145)
122 PF04840 Vps16_C: Vps16, C-ter 96.2 0.13 2.9E-06 44.4 12.5 119 139-272 180-302 (319)
123 PF03704 BTAD: Bacterial trans 96.2 0.022 4.8E-07 43.1 7.0 71 138-236 64-140 (146)
124 KOG0495 HAT repeat protein [RN 96.2 1.2 2.5E-05 41.8 21.9 119 185-304 738-879 (913)
125 KOG1914 mRNA cleavage and poly 96.2 1 2.2E-05 41.1 18.8 106 198-304 367-500 (656)
126 KOG3785 Uncharacterized conser 96.1 0.8 1.7E-05 39.6 16.5 96 196-304 393-489 (557)
127 KOG3941 Intermediate in Toll s 96.1 0.051 1.1E-06 45.2 8.8 90 159-248 53-174 (406)
128 PF12921 ATP13: Mitochondrial 96.1 0.03 6.4E-07 41.3 6.7 32 273-304 49-80 (126)
129 cd00189 TPR Tetratricopeptide 96.0 0.044 9.6E-07 36.7 7.4 90 139-256 3-92 (100)
130 PRK15179 Vi polysaccharide bio 96.0 0.066 1.4E-06 51.3 10.4 131 27-179 89-230 (694)
131 KOG1538 Uncharacterized conser 95.9 0.2 4.3E-06 46.5 12.5 193 47-272 623-844 (1081)
132 PRK15363 pathogenicity island 95.9 0.54 1.2E-05 35.9 12.9 106 187-304 24-131 (157)
133 PF05843 Suf: Suppressor of fo 95.9 0.058 1.3E-06 45.9 8.7 133 137-304 2-135 (280)
134 CHL00033 ycf3 photosystem I as 95.9 0.35 7.5E-06 37.5 12.5 123 135-291 34-166 (168)
135 KOG0547 Translocase of outer m 95.7 0.093 2E-06 46.9 9.3 48 38-87 340-387 (606)
136 PRK14720 transcript cleavage f 95.7 0.38 8.3E-06 47.2 14.3 28 277-304 224-251 (906)
137 KOG3060 Uncharacterized conser 95.7 0.97 2.1E-05 37.3 14.2 172 39-255 27-214 (289)
138 PLN03088 SGT1, suppressor of 95.6 0.097 2.1E-06 46.2 9.4 101 98-242 13-113 (356)
139 KOG4340 Uncharacterized conser 95.6 0.72 1.6E-05 38.9 13.4 165 37-228 23-209 (459)
140 KOG3617 WD40 and TPR repeat-co 95.5 0.4 8.7E-06 45.9 13.1 21 247-267 1037-1057(1416)
141 PF14559 TPR_19: Tetratricopep 95.5 0.029 6.3E-07 36.1 4.4 52 98-168 2-53 (68)
142 PLN02789 farnesyltranstransfer 95.5 0.52 1.1E-05 40.9 13.2 182 71-304 48-249 (320)
143 PF04840 Vps16_C: Vps16, C-ter 95.5 1.2 2.7E-05 38.5 15.5 52 199-254 179-230 (319)
144 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.8 3.9E-05 38.7 17.7 106 197-303 397-529 (660)
145 PF09976 TPR_21: Tetratricopep 95.4 0.55 1.2E-05 35.4 11.9 116 100-256 24-142 (145)
146 PF12895 Apc3: Anaphase-promot 95.4 0.033 7.2E-07 37.7 4.6 82 100-222 2-83 (84)
147 KOG0985 Vesicle coat protein c 95.4 1.1 2.5E-05 44.0 15.8 235 34-301 488-749 (1666)
148 KOG2053 Mitochondrial inherita 95.4 0.82 1.8E-05 44.0 14.7 88 71-174 54-148 (932)
149 PF14938 SNAP: Soluble NSF att 95.4 0.68 1.5E-05 39.4 13.4 73 185-257 141-221 (282)
150 PLN02789 farnesyltranstransfer 95.2 1.8 3.9E-05 37.5 15.7 119 28-168 41-170 (320)
151 PRK02603 photosystem I assembl 95.2 0.52 1.1E-05 36.7 11.4 128 136-291 35-166 (172)
152 PF07035 Mic1: Colon cancer-as 95.2 1 2.2E-05 34.8 12.4 111 127-249 20-137 (167)
153 CHL00033 ycf3 photosystem I as 95.1 0.41 8.9E-06 37.1 10.4 96 197-302 35-139 (168)
154 PRK02603 photosystem I assembl 95.1 0.51 1.1E-05 36.8 11.0 85 196-291 34-121 (172)
155 PLN03088 SGT1, suppressor of 95.0 0.3 6.5E-06 43.1 10.4 87 207-304 12-98 (356)
156 KOG1173 Anaphase-promoting com 94.9 0.14 3.1E-06 46.5 7.9 61 196-257 454-514 (611)
157 PF14559 TPR_19: Tetratricopep 94.9 0.12 2.6E-06 33.1 5.8 46 208-255 2-48 (68)
158 PF13424 TPR_12: Tetratricopep 94.9 0.14 3E-06 33.9 6.3 66 136-224 5-73 (78)
159 PF13424 TPR_12: Tetratricopep 94.8 0.13 2.8E-06 34.1 6.1 65 233-303 6-73 (78)
160 COG4783 Putative Zn-dependent 94.8 1.2 2.6E-05 40.0 13.2 103 185-302 325-434 (484)
161 KOG4162 Predicted calmodulin-b 94.6 2.2 4.7E-05 40.7 14.9 196 45-257 309-538 (799)
162 PF09205 DUF1955: Domain of un 94.6 0.5 1.1E-05 34.8 8.6 110 196-308 33-152 (161)
163 TIGR02795 tol_pal_ybgF tol-pal 94.4 0.73 1.6E-05 32.8 9.8 92 138-255 4-99 (119)
164 PF03704 BTAD: Bacterial trans 94.0 0.17 3.7E-06 38.2 5.9 48 263-310 80-135 (146)
165 PF12688 TPR_5: Tetratrico pep 93.8 0.64 1.4E-05 33.9 8.1 87 205-302 9-101 (120)
166 KOG3941 Intermediate in Toll s 93.8 1.5 3.2E-05 36.9 10.9 108 185-292 53-174 (406)
167 PF07079 DUF1347: Protein of u 93.5 5.5 0.00012 35.8 17.5 259 33-304 15-326 (549)
168 PF13432 TPR_16: Tetratricopep 93.4 0.35 7.5E-06 30.6 5.8 51 204-256 4-55 (65)
169 KOG0553 TPR repeat-containing 93.4 0.88 1.9E-05 38.3 9.2 100 97-242 91-192 (304)
170 KOG2376 Signal recognition par 93.4 1 2.2E-05 41.5 10.2 102 205-307 20-141 (652)
171 PLN03098 LPA1 LOW PSII ACCUMUL 93.3 1.4 3E-05 39.7 10.8 92 196-291 74-176 (453)
172 KOG1125 TPR repeat-containing 93.2 0.95 2.1E-05 41.5 9.8 136 126-298 420-564 (579)
173 KOG2041 WD40 repeat protein [G 93.0 4.8 0.0001 38.2 13.9 61 56-117 689-764 (1189)
174 PF12688 TPR_5: Tetratrico pep 92.9 0.51 1.1E-05 34.4 6.5 101 29-148 6-118 (120)
175 PRK10803 tol-pal system protei 92.7 1.9 4.1E-05 36.2 10.6 93 198-305 144-246 (263)
176 PF13414 TPR_11: TPR repeat; P 92.2 0.73 1.6E-05 29.4 6.1 60 196-256 2-62 (69)
177 PRK04841 transcriptional regul 92.2 14 0.0003 37.1 20.5 257 31-304 459-759 (903)
178 PF14938 SNAP: Soluble NSF att 91.8 7.3 0.00016 33.1 13.6 86 199-305 96-184 (282)
179 PRK14720 transcript cleavage f 91.8 15 0.00032 36.6 16.5 143 135-287 115-268 (906)
180 KOG0553 TPR repeat-containing 91.8 1.1 2.4E-05 37.8 7.8 85 207-304 91-177 (304)
181 PF07035 Mic1: Colon cancer-as 91.7 4.6 0.0001 31.3 10.7 115 187-305 19-149 (167)
182 KOG4162 Predicted calmodulin-b 91.7 7.2 0.00016 37.4 13.6 201 97-303 275-540 (799)
183 KOG2053 Mitochondrial inherita 91.6 15 0.00032 36.0 19.1 20 135-154 76-95 (932)
184 KOG1538 Uncharacterized conser 91.5 13 0.00027 35.2 17.4 73 233-305 748-846 (1081)
185 KOG3785 Uncharacterized conser 91.4 9.2 0.0002 33.4 15.8 145 141-302 290-454 (557)
186 KOG1156 N-terminal acetyltrans 91.2 13 0.00029 34.9 19.3 95 200-306 374-469 (700)
187 PF00637 Clathrin: Region in C 91.2 0.16 3.5E-06 38.2 2.4 91 195-292 40-141 (143)
188 PRK04841 transcriptional regul 91.2 18 0.00038 36.3 21.7 214 67-304 460-719 (903)
189 PF13432 TPR_16: Tetratricopep 91.1 0.39 8.4E-06 30.4 3.7 44 262-305 14-60 (65)
190 PRK10866 outer membrane biogen 90.6 8.8 0.00019 31.8 16.8 178 97-303 42-239 (243)
191 smart00299 CLH Clathrin heavy 90.5 5.2 0.00011 29.7 10.0 47 200-247 10-56 (140)
192 KOG1914 mRNA cleavage and poly 90.3 9.1 0.0002 35.3 12.5 126 60-225 367-500 (656)
193 KOG2796 Uncharacterized conser 90.3 9.9 0.00021 31.8 17.7 205 29-255 36-275 (366)
194 smart00299 CLH Clathrin heavy 90.2 6.1 0.00013 29.4 12.6 15 140-154 11-25 (140)
195 KOG4340 Uncharacterized conser 90.2 11 0.00023 32.2 18.6 170 71-257 123-335 (459)
196 PF13414 TPR_11: TPR repeat; P 90.1 0.74 1.6E-05 29.4 4.5 64 231-304 2-66 (69)
197 PF13762 MNE1: Mitochondrial s 90.1 6.7 0.00014 29.6 11.6 101 127-248 28-131 (145)
198 PRK15363 pathogenicity island 89.8 1.7 3.6E-05 33.2 6.6 89 140-257 39-128 (157)
199 PRK10153 DNA-binding transcrip 89.7 14 0.00031 34.4 14.0 126 129-256 330-477 (517)
200 KOG2796 Uncharacterized conser 89.4 5.8 0.00013 33.1 9.8 86 30-116 183-281 (366)
201 COG3629 DnrI DNA-binding trans 89.4 2.3 4.9E-05 36.0 7.7 81 136-243 153-238 (280)
202 KOG0624 dsRNA-activated protei 89.3 14 0.0003 32.2 19.5 38 194-233 220-257 (504)
203 PF13176 TPR_7: Tetratricopept 88.5 1.3 2.8E-05 24.3 4.1 26 199-224 1-26 (36)
204 PF10602 RPN7: 26S proteasome 88.5 3.8 8.1E-05 32.2 8.1 97 198-302 37-139 (177)
205 KOG3060 Uncharacterized conser 88.5 13 0.00029 30.9 12.8 140 3-167 32-181 (289)
206 PF04053 Coatomer_WDAD: Coatom 87.7 6.4 0.00014 35.9 10.1 141 59-265 295-435 (443)
207 PF13371 TPR_9: Tetratricopept 87.5 2.3 5E-05 27.4 5.5 52 205-257 3-54 (73)
208 KOG1920 IkappaB kinase complex 87.5 20 0.00044 36.3 13.6 103 200-302 896-1025(1265)
209 COG5107 RNA14 Pre-mRNA 3'-end 87.4 1.3 2.9E-05 39.5 5.3 122 32-170 405-536 (660)
210 PF13176 TPR_7: Tetratricopept 87.3 1.7 3.6E-05 23.8 4.0 26 278-303 1-26 (36)
211 PF13170 DUF4003: Protein of u 87.0 19 0.00041 30.9 14.5 155 28-238 61-223 (297)
212 PF13428 TPR_14: Tetratricopep 86.9 1.9 4E-05 24.9 4.3 29 277-305 2-30 (44)
213 KOG1125 TPR repeat-containing 86.1 3.2 6.9E-05 38.2 7.1 100 44-164 414-522 (579)
214 PF00637 Clathrin: Region in C 86.0 0.5 1.1E-05 35.5 1.9 55 202-256 12-66 (143)
215 PLN03098 LPA1 LOW PSII ACCUMUL 86.0 15 0.00033 33.2 11.2 66 133-226 72-141 (453)
216 PF13371 TPR_9: Tetratricopept 86.0 2.3 5.1E-05 27.3 4.9 53 240-305 3-58 (73)
217 PRK10803 tol-pal system protei 85.8 15 0.00032 30.9 10.7 94 136-255 143-240 (263)
218 COG4235 Cytochrome c biogenesi 85.8 12 0.00025 31.8 9.8 97 196-305 155-256 (287)
219 PRK15331 chaperone protein Sic 85.7 7.8 0.00017 29.9 8.1 87 207-304 47-133 (165)
220 PRK10153 DNA-binding transcrip 85.7 31 0.00068 32.2 14.1 127 167-304 333-481 (517)
221 COG4700 Uncharacterized protei 85.6 12 0.00025 29.7 9.0 57 29-86 94-150 (251)
222 KOG2114 Vacuolar assembly/sort 85.1 8.9 0.00019 37.2 9.7 90 127-225 423-518 (933)
223 KOG4570 Uncharacterized conser 84.2 0.67 1.5E-05 39.3 1.9 104 46-164 51-163 (418)
224 PF13170 DUF4003: Protein of u 84.2 15 0.00033 31.5 10.1 103 197-310 60-177 (297)
225 cd00923 Cyt_c_Oxidase_Va Cytoc 84.2 2 4.2E-05 29.8 3.8 48 39-87 22-69 (103)
226 PRK10866 outer membrane biogen 83.5 24 0.00053 29.2 12.3 54 202-255 180-235 (243)
227 PF09613 HrpB1_HrpK: Bacterial 83.0 5.3 0.00012 30.6 6.2 93 61-169 9-110 (160)
228 KOG2376 Signal recognition par 82.4 44 0.00095 31.4 21.8 59 197-257 376-442 (652)
229 PF02284 COX5A: Cytochrome c o 82.3 2.1 4.5E-05 30.0 3.4 47 40-87 26-72 (108)
230 PF13374 TPR_10: Tetratricopep 82.3 3.3 7.1E-05 23.0 3.9 28 277-304 3-30 (42)
231 PF13374 TPR_10: Tetratricopep 82.0 3.7 8E-05 22.8 4.1 28 198-225 3-30 (42)
232 PF13428 TPR_14: Tetratricopep 81.8 3.8 8.3E-05 23.5 4.1 33 199-233 3-35 (44)
233 PF04053 Coatomer_WDAD: Coatom 81.2 17 0.00036 33.2 9.7 144 97-301 271-427 (443)
234 PHA02875 ankyrin repeat protei 81.1 39 0.00085 30.3 12.3 38 47-85 18-57 (413)
235 PF00515 TPR_1: Tetratricopept 79.5 5 0.00011 21.2 3.8 28 277-304 2-29 (34)
236 KOG0991 Replication factor C, 79.3 35 0.00075 28.3 14.9 100 207-310 169-272 (333)
237 KOG1127 TPR repeat-containing 79.1 15 0.00032 36.6 8.9 105 199-304 494-624 (1238)
238 KOG1156 N-terminal acetyltrans 79.0 60 0.0013 30.9 18.3 113 185-302 390-508 (700)
239 TIGR02508 type_III_yscG type I 78.6 7.7 0.00017 27.1 5.1 77 39-117 20-98 (115)
240 PF10300 DUF3808: Protein of u 78.3 39 0.00084 31.2 11.3 57 200-257 308-372 (468)
241 COG3629 DnrI DNA-binding trans 78.3 9.2 0.0002 32.4 6.7 36 275-310 186-226 (280)
242 COG4235 Cytochrome c biogenesi 78.2 22 0.00049 30.1 8.8 103 133-241 153-269 (287)
243 KOG1127 TPR repeat-containing 78.2 77 0.0017 32.0 13.2 91 58-168 525-624 (1238)
244 PF10366 Vps39_1: Vacuolar sor 77.5 12 0.00025 26.7 6.1 28 277-304 40-67 (108)
245 KOG0543 FKBP-type peptidyl-pro 76.7 19 0.00042 31.9 8.3 114 97-244 218-336 (397)
246 PF13929 mRNA_stabil: mRNA sta 76.6 47 0.001 28.3 15.2 113 106-243 167-289 (292)
247 KOG2114 Vacuolar assembly/sort 75.8 19 0.00041 35.1 8.5 73 196-272 430-517 (933)
248 PHA02875 ankyrin repeat protei 75.7 46 0.001 29.9 11.1 75 71-167 10-92 (413)
249 PF11848 DUF3368: Domain of un 75.2 14 0.00031 21.8 5.2 39 202-241 8-46 (48)
250 KOG2280 Vacuolar assembly/sort 75.1 15 0.00033 35.2 7.7 100 175-298 693-792 (829)
251 KOG0624 dsRNA-activated protei 74.3 61 0.0013 28.5 12.8 48 204-252 162-209 (504)
252 PF13281 DUF4071: Domain of un 74.2 64 0.0014 28.7 17.9 52 64-116 146-211 (374)
253 PF07719 TPR_2: Tetratricopept 73.7 10 0.00022 19.8 4.1 27 278-304 3-29 (34)
254 KOG0991 Replication factor C, 73.5 51 0.0011 27.3 10.4 58 185-244 227-284 (333)
255 TIGR02561 HrpB1_HrpK type III 72.8 22 0.00048 26.9 6.7 47 71-117 21-74 (153)
256 PF10300 DUF3808: Protein of u 71.7 84 0.0018 29.0 15.5 153 138-303 190-374 (468)
257 PF00515 TPR_1: Tetratricopept 70.8 13 0.00029 19.4 4.3 28 198-225 2-29 (34)
258 COG1729 Uncharacterized protei 70.8 63 0.0014 27.1 10.4 97 199-305 144-244 (262)
259 PF07721 TPR_4: Tetratricopept 70.5 8.3 0.00018 19.2 2.9 22 279-300 4-25 (26)
260 PF11663 Toxin_YhaV: Toxin wit 70.5 5.4 0.00012 29.5 3.0 30 211-242 109-138 (140)
261 KOG0276 Vesicle coat complex C 70.3 18 0.00038 34.0 6.8 59 200-264 695-753 (794)
262 KOG4570 Uncharacterized conser 70.1 9.8 0.00021 32.7 4.8 47 211-257 114-160 (418)
263 TIGR03504 FimV_Cterm FimV C-te 70.0 12 0.00027 21.7 3.9 26 203-228 5-30 (44)
264 PF13174 TPR_6: Tetratricopept 69.9 7 0.00015 20.2 2.8 24 282-305 6-29 (33)
265 PF07079 DUF1347: Protein of u 69.9 72 0.0016 29.1 10.2 51 196-246 127-181 (549)
266 PF13512 TPR_18: Tetratricopep 69.0 27 0.00059 26.2 6.5 74 97-182 20-93 (142)
267 PF02284 COX5A: Cytochrome c o 68.9 22 0.00048 25.0 5.5 41 215-255 28-68 (108)
268 TIGR02508 type_III_yscG type I 68.9 38 0.00082 23.8 7.4 42 263-306 57-98 (115)
269 TIGR03504 FimV_Cterm FimV C-te 68.6 11 0.00024 21.8 3.5 25 282-306 5-29 (44)
270 PF14689 SPOB_a: Sensor_kinase 68.2 9.2 0.0002 24.1 3.4 25 201-225 27-51 (62)
271 KOG0548 Molecular co-chaperone 68.1 33 0.00072 31.6 8.0 49 204-253 365-413 (539)
272 PF14689 SPOB_a: Sensor_kinase 68.0 9.4 0.0002 24.0 3.4 30 275-304 22-51 (62)
273 cd00923 Cyt_c_Oxidase_Va Cytoc 67.8 28 0.00061 24.3 5.8 42 214-255 24-65 (103)
274 PF09454 Vps23_core: Vps23 cor 66.9 15 0.00031 23.5 4.1 52 192-244 3-54 (65)
275 PRK15331 chaperone protein Sic 66.9 47 0.001 25.7 7.6 109 4-115 11-133 (165)
276 KOG4648 Uncharacterized conser 66.3 15 0.00033 32.0 5.2 46 206-253 106-152 (536)
277 KOG4077 Cytochrome c oxidase, 66.3 11 0.00023 27.7 3.7 43 44-87 69-111 (149)
278 PRK10564 maltose regulon perip 66.2 14 0.0003 31.5 5.0 46 195-240 254-300 (303)
279 KOG0548 Molecular co-chaperone 65.7 26 0.00056 32.3 6.8 86 206-303 11-97 (539)
280 PF10602 RPN7: 26S proteasome 64.9 42 0.00091 26.3 7.3 65 137-225 37-101 (177)
281 PLN03025 replication factor C 64.8 77 0.0017 27.4 9.7 84 224-310 172-258 (319)
282 PRK13342 recombination factor 64.7 1E+02 0.0022 27.9 10.7 33 277-309 228-263 (413)
283 PF11207 DUF2989: Protein of u 64.6 42 0.00092 26.9 7.1 82 97-217 117-198 (203)
284 COG4700 Uncharacterized protei 64.5 72 0.0016 25.5 10.2 51 202-252 94-144 (251)
285 PF11663 Toxin_YhaV: Toxin wit 64.3 10 0.00022 28.1 3.3 35 33-69 104-138 (140)
286 KOG0276 Vesicle coat complex C 64.2 1.4E+02 0.0029 28.5 11.0 79 135-223 665-747 (794)
287 PF00356 LacI: Bacterial regul 63.2 16 0.00036 21.4 3.6 34 25-58 11-46 (46)
288 PF09477 Type_III_YscG: Bacter 63.2 14 0.00031 26.2 3.8 78 38-117 20-99 (116)
289 KOG4555 TPR repeat-containing 62.8 53 0.0011 24.5 6.7 45 207-252 53-97 (175)
290 KOG0508 Ankyrin repeat protein 62.6 43 0.00094 30.5 7.5 230 71-309 92-373 (615)
291 PF13431 TPR_17: Tetratricopep 62.1 9.2 0.0002 20.6 2.3 22 196-217 12-33 (34)
292 PRK10564 maltose regulon perip 60.7 15 0.00031 31.4 4.2 35 274-308 254-289 (303)
293 KOG1920 IkappaB kinase complex 60.5 2.1E+02 0.0046 29.6 16.1 53 99-164 863-919 (1265)
294 PF04184 ST7: ST7 protein; In 59.6 1.4E+02 0.0031 27.6 10.3 81 140-246 263-345 (539)
295 COG0735 Fur Fe2+/Zn2+ uptake r 59.4 70 0.0015 24.1 7.4 68 5-77 4-72 (145)
296 PF11848 DUF3368: Domain of un 58.9 35 0.00076 20.1 4.5 35 34-68 12-46 (48)
297 PF09205 DUF1955: Domain of un 58.3 76 0.0017 23.8 10.4 60 197-257 86-145 (161)
298 PF11846 DUF3366: Domain of un 57.8 52 0.0011 26.0 6.9 31 273-303 141-171 (193)
299 COG1729 Uncharacterized protei 57.5 36 0.00079 28.5 5.9 95 94-226 145-244 (262)
300 PF13934 ELYS: Nuclear pore co 57.3 74 0.0016 26.1 7.8 79 173-254 78-162 (226)
301 PF13181 TPR_8: Tetratricopept 57.2 27 0.00058 18.2 4.2 27 199-225 3-29 (34)
302 COG4105 ComL DNA uptake lipopr 56.6 1.2E+02 0.0025 25.4 13.7 145 97-254 44-226 (254)
303 COG4649 Uncharacterized protei 56.0 31 0.00067 27.1 4.8 122 28-167 60-194 (221)
304 PRK08691 DNA polymerase III su 54.9 1.4E+02 0.003 29.2 9.9 92 214-309 181-278 (709)
305 PF11846 DUF3366: Domain of un 54.8 53 0.0011 26.0 6.5 48 209-256 120-168 (193)
306 COG4455 ImpE Protein of avirul 54.7 56 0.0012 26.8 6.2 49 204-253 8-56 (273)
307 PRK14956 DNA polymerase III su 54.3 1.8E+02 0.0039 27.0 10.2 81 226-309 196-281 (484)
308 PF04762 IKI3: IKI3 family; I 53.0 2.7E+02 0.0058 28.4 14.3 41 186-226 799-843 (928)
309 PF13525 YfiO: Outer membrane 52.8 1.2E+02 0.0025 24.2 15.4 169 97-296 15-198 (203)
310 PF12926 MOZART2: Mitotic-spin 52.7 33 0.00072 23.2 4.0 44 43-87 27-70 (88)
311 PRK14963 DNA polymerase III su 52.6 1.9E+02 0.0042 27.0 10.5 93 214-309 178-274 (504)
312 PF02259 FAT: FAT domain; Int 52.6 1.5E+02 0.0033 25.5 11.5 63 195-257 144-209 (352)
313 PF08311 Mad3_BUB1_I: Mad3/BUB 52.5 90 0.0019 22.8 7.6 42 42-84 81-123 (126)
314 PF13512 TPR_18: Tetratricopep 52.3 1E+02 0.0022 23.3 10.2 57 197-254 11-69 (142)
315 COG4455 ImpE Protein of avirul 51.5 74 0.0016 26.1 6.5 76 139-241 4-81 (273)
316 PRK14958 DNA polymerase III su 51.0 2.2E+02 0.0047 26.7 10.7 84 224-310 192-279 (509)
317 PF01475 FUR: Ferric uptake re 50.2 47 0.001 23.9 5.1 50 28-78 11-60 (120)
318 cd07153 Fur_like Ferric uptake 49.8 49 0.0011 23.5 5.1 49 202-250 5-53 (116)
319 smart00028 TPR Tetratricopepti 49.4 31 0.00066 16.5 3.8 28 277-304 2-29 (34)
320 KOG1585 Protein required for f 49.1 1.6E+02 0.0035 24.7 11.5 211 55-299 23-250 (308)
321 COG2812 DnaX DNA polymerase II 49.0 47 0.001 31.0 5.8 94 31-127 164-285 (515)
322 PF13281 DUF4071: Domain of un 48.7 1.4E+02 0.0031 26.6 8.5 67 19-86 133-208 (374)
323 KOG2908 26S proteasome regulat 48.5 71 0.0015 27.9 6.3 53 258-310 88-154 (380)
324 PRK14951 DNA polymerase III su 48.4 1.7E+02 0.0036 28.2 9.5 92 215-309 187-283 (618)
325 COG2909 MalT ATP-dependent tra 47.9 3E+02 0.0065 27.5 18.5 62 97-168 425-490 (894)
326 PF10579 Rapsyn_N: Rapsyn N-te 46.9 61 0.0013 21.6 4.5 50 204-254 14-65 (80)
327 COG3898 Uncharacterized membra 46.9 2.2E+02 0.0048 25.7 10.9 29 276-304 188-216 (531)
328 PF02607 B12-binding_2: B12 bi 46.9 31 0.00067 22.6 3.4 39 209-247 13-51 (79)
329 cd07153 Fur_like Ferric uptake 46.7 74 0.0016 22.6 5.6 49 29-78 5-53 (116)
330 PRK07003 DNA polymerase III su 46.6 2.5E+02 0.0054 28.0 10.2 92 214-309 181-278 (830)
331 PF13929 mRNA_stabil: mRNA sta 46.1 1.9E+02 0.0041 24.7 13.3 109 185-301 147-263 (292)
332 PF14853 Fis1_TPR_C: Fis1 C-te 45.8 67 0.0015 19.4 4.4 37 203-241 7-43 (53)
333 PF08631 SPO22: Meiosis protei 45.2 1.9E+02 0.0041 24.4 14.3 98 198-305 37-150 (278)
334 PF04184 ST7: ST7 protein; In 44.9 91 0.002 28.8 6.7 55 203-257 265-320 (539)
335 PF09613 HrpB1_HrpK: Bacterial 44.2 1.5E+02 0.0032 22.9 10.0 40 185-226 29-73 (160)
336 COG5108 RPO41 Mitochondrial DN 44.1 1.7E+02 0.0037 28.3 8.4 51 202-252 33-85 (1117)
337 PRK11639 zinc uptake transcrip 43.7 1.4E+02 0.003 23.1 7.0 51 28-79 29-79 (169)
338 PRK13341 recombination factor 42.7 3.5E+02 0.0075 26.8 10.9 22 288-309 270-291 (725)
339 PF14669 Asp_Glu_race_2: Putat 41.7 76 0.0016 25.4 5.1 113 138-257 73-206 (233)
340 KOG0037 Ca2+-binding protein, 41.6 1.1E+02 0.0023 24.9 6.0 80 56-150 90-173 (221)
341 PF10366 Vps39_1: Vacuolar sor 41.5 99 0.0021 22.0 5.4 28 198-225 40-67 (108)
342 PF11207 DUF2989: Protein of u 41.2 1.9E+02 0.0041 23.3 7.8 76 214-296 123-198 (203)
343 PF01475 FUR: Ferric uptake re 41.2 51 0.0011 23.7 4.1 50 201-250 11-60 (120)
344 PRK09462 fur ferric uptake reg 41.2 1.3E+02 0.0028 22.6 6.4 49 28-77 20-69 (148)
345 COG5159 RPN6 26S proteasome re 40.5 2.4E+02 0.0052 24.3 10.8 99 204-302 10-151 (421)
346 PRK07452 DNA polymerase III su 40.3 2.4E+02 0.0053 24.3 9.9 33 275-309 200-232 (326)
347 PHA03100 ankyrin repeat protei 40.3 2.9E+02 0.0063 25.2 12.3 43 123-169 158-202 (480)
348 PF10255 Paf67: RNA polymerase 40.2 2.4E+02 0.0051 25.6 8.6 69 233-303 123-191 (404)
349 PHA02878 ankyrin repeat protei 39.8 3E+02 0.0066 25.3 10.6 178 45-233 51-264 (477)
350 KOG0543 FKBP-type peptidyl-pro 39.6 1.7E+02 0.0037 26.2 7.5 94 197-304 257-354 (397)
351 PF11817 Foie-gras_1: Foie gra 39.0 27 0.00058 29.0 2.5 57 97-163 188-245 (247)
352 KOG2041 WD40 repeat protein [G 38.8 3.9E+02 0.0085 26.2 12.9 72 185-262 753-826 (1189)
353 KOG0989 Replication factor C, 38.6 1.3E+02 0.0027 26.2 6.3 80 44-126 195-294 (346)
354 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 87 0.0019 23.6 4.9 49 201-249 24-72 (145)
355 KOG0550 Molecular chaperone (D 37.3 1.5E+02 0.0033 26.7 6.8 48 206-253 258-308 (486)
356 PRK14971 DNA polymerase III su 37.1 3.9E+02 0.0085 25.8 10.6 82 225-309 195-280 (614)
357 PRK07764 DNA polymerase III su 36.5 4.6E+02 0.01 26.4 11.3 36 195-231 246-281 (824)
358 PF13762 MNE1: Mitochondrial s 36.2 98 0.0021 23.4 4.8 48 25-73 77-128 (145)
359 PF06576 DUF1133: Protein of u 34.8 2.2E+02 0.0047 22.2 8.7 18 135-152 115-132 (176)
360 COG0819 TenA Putative transcri 34.6 2.5E+02 0.0055 22.9 7.6 104 126-245 99-203 (218)
361 PF08631 SPO22: Meiosis protei 34.4 2.8E+02 0.0062 23.4 15.3 117 99-252 5-141 (278)
362 PF02847 MA3: MA3 domain; Int 33.9 1.7E+02 0.0036 20.5 7.5 24 201-224 6-29 (113)
363 PF13934 ELYS: Nuclear pore co 33.7 2.7E+02 0.0058 22.8 9.4 42 72-113 90-134 (226)
364 COG3898 Uncharacterized membra 33.6 3.7E+02 0.0079 24.4 16.8 110 132-249 183-311 (531)
365 PHA02940 hypothetical protein; 32.6 1.8E+02 0.0039 24.1 6.0 101 28-146 97-214 (315)
366 PLN03025 replication factor C 31.3 3.4E+02 0.0075 23.4 9.9 40 194-234 222-261 (319)
367 COG4003 Uncharacterized protei 31.2 94 0.002 20.8 3.5 34 273-306 27-61 (98)
368 KOG2297 Predicted translation 31.0 3.6E+02 0.0078 23.5 8.8 16 54-69 141-156 (412)
369 PRK14963 DNA polymerase III su 30.8 1.4E+02 0.003 27.9 6.0 73 48-123 186-277 (504)
370 PRK14953 DNA polymerase III su 30.6 3.9E+02 0.0084 24.9 8.8 30 279-309 249-278 (486)
371 PF11838 ERAP1_C: ERAP1-like C 30.3 3.5E+02 0.0075 23.1 9.0 79 213-304 146-229 (324)
372 PRK11639 zinc uptake transcrip 30.2 2.2E+02 0.0047 22.1 6.2 51 201-251 29-79 (169)
373 PF13877 RPAP3_C: Potential Mo 29.8 1.8E+02 0.004 19.7 5.8 58 27-85 33-90 (94)
374 PF07064 RIC1: RIC1; InterPro 29.5 3.4E+02 0.0074 22.8 9.7 57 202-258 184-246 (258)
375 PF12796 Ank_2: Ankyrin repeat 29.3 1.3E+02 0.0029 19.7 4.4 83 207-310 4-86 (89)
376 KOG1130 Predicted G-alpha GTPa 28.8 1.1E+02 0.0023 27.8 4.5 52 206-257 26-80 (639)
377 TIGR02561 HrpB1_HrpK type III 28.8 2.7E+02 0.0058 21.3 8.3 94 100-224 23-120 (153)
378 PRK06645 DNA polymerase III su 28.3 5.1E+02 0.011 24.4 10.7 82 225-309 202-290 (507)
379 PF02184 HAT: HAT (Half-A-TPR) 28.1 93 0.002 16.7 2.6 24 212-237 2-25 (32)
380 PF11084 DUF2621: Protein of u 27.7 2.5E+02 0.0055 20.7 6.3 30 138-171 12-41 (141)
381 COG5210 GTPase-activating prot 27.7 4.2E+02 0.0091 24.7 8.6 40 218-257 363-402 (496)
382 cd08326 CARD_CASP9 Caspase act 27.7 2E+02 0.0042 19.4 5.0 61 187-251 20-80 (84)
383 KOG2753 Uncharacterized conser 27.7 4.2E+02 0.0092 23.3 8.2 73 137-214 65-141 (378)
384 COG4649 Uncharacterized protei 27.5 3.2E+02 0.0068 21.7 11.2 110 196-306 58-197 (221)
385 PF05944 Phage_term_smal: Phag 26.6 2.7E+02 0.0059 20.7 7.3 47 122-168 34-80 (132)
386 COG3947 Response regulator con 26.5 3.1E+02 0.0068 23.7 6.6 42 41-85 150-191 (361)
387 COG5108 RPO41 Mitochondrial DN 26.2 3.3E+02 0.0071 26.5 7.3 24 141-164 33-56 (1117)
388 PRK14961 DNA polymerase III su 26.2 4.6E+02 0.01 23.2 10.7 80 226-309 194-278 (363)
389 cd08812 CARD_RIG-I_like Caspas 26.0 1.9E+02 0.0041 19.6 4.5 55 242-296 31-86 (88)
390 PF14162 YozD: YozD-like prote 25.9 68 0.0015 19.2 2.0 17 295-311 14-30 (57)
391 PRK07764 DNA polymerase III su 25.7 6.7E+02 0.015 25.3 9.9 18 290-307 261-278 (824)
392 COG3118 Thioredoxin domain-con 25.4 4.4E+02 0.0096 22.7 13.2 150 117-306 115-266 (304)
393 PF11768 DUF3312: Protein of u 25.2 5.9E+02 0.013 24.1 9.1 116 97-252 418-543 (545)
394 PHA03100 ankyrin repeat protei 25.0 5.3E+02 0.012 23.5 9.4 42 44-86 48-96 (480)
395 TIGR02328 conserved hypothetic 25.0 53 0.0011 23.5 1.7 16 296-311 55-70 (120)
396 COG1466 HolA DNA polymerase II 25.0 1.6E+02 0.0034 25.7 5.1 81 37-120 137-241 (334)
397 PF13525 YfiO: Outer membrane 24.9 3.5E+02 0.0077 21.4 11.5 26 200-225 45-70 (203)
398 KOG0687 26S proteasome regulat 24.7 4.8E+02 0.011 22.9 8.1 165 28-208 42-233 (393)
399 COG4105 ComL DNA uptake lipopr 24.6 4.2E+02 0.0092 22.2 12.8 23 283-305 174-196 (254)
400 PRK14951 DNA polymerase III su 24.6 2E+02 0.0044 27.7 6.0 95 30-127 168-290 (618)
401 KOG2610 Uncharacterized conser 24.3 5.1E+02 0.011 23.0 8.6 91 210-301 116-234 (491)
402 PF12554 MOZART1: Mitotic-spin 23.9 1.5E+02 0.0031 17.7 3.1 28 283-310 11-38 (48)
403 PRK05907 hypothetical protein; 23.8 2.8E+02 0.0061 24.0 6.3 76 44-121 141-239 (311)
404 cd07229 Pat_TGL3_like Triacylg 23.8 4.1E+02 0.0089 24.0 7.4 79 214-292 168-253 (391)
405 PRK09462 fur ferric uptake reg 23.7 2.1E+02 0.0047 21.4 5.0 48 202-249 21-69 (148)
406 PRK14958 DNA polymerase III su 23.6 6.2E+02 0.013 23.8 10.4 40 193-233 242-281 (509)
407 cd01671 CARD Caspase activatio 23.5 2.2E+02 0.0047 18.4 5.2 36 210-249 40-75 (80)
408 PF09868 DUF2095: Uncharacteri 23.3 1.4E+02 0.003 21.5 3.5 26 281-306 66-91 (128)
409 smart00777 Mad3_BUB1_I Mad3/BU 23.2 3.1E+02 0.0067 20.1 7.2 42 42-84 81-123 (125)
410 KOG1585 Protein required for f 23.2 3.6E+02 0.0078 22.7 6.2 163 132-302 23-216 (308)
411 KOG4521 Nuclear pore complex, 23.2 9E+02 0.02 25.5 14.3 72 97-168 930-1015(1480)
412 PRK07914 hypothetical protein; 23.0 2.7E+02 0.0059 24.0 6.2 74 44-120 135-228 (320)
413 PF00627 UBA: UBA/TS-N domain; 22.8 1.4E+02 0.0031 16.1 3.4 33 45-82 4-36 (37)
414 smart00638 LPD_N Lipoprotein N 22.2 6.8E+02 0.015 23.7 11.8 66 164-230 303-373 (574)
415 KOG4077 Cytochrome c oxidase, 21.9 2.8E+02 0.006 20.6 4.8 38 218-255 70-107 (149)
416 PF08542 Rep_fac_C: Replicatio 21.8 1.2E+02 0.0026 20.2 3.0 33 276-309 5-37 (89)
417 PF07840 FadR_C: FadR C-termin 21.8 1.5E+02 0.0033 22.9 3.8 16 73-88 47-62 (164)
418 PF14840 DNA_pol3_delt_C: Proc 21.7 89 0.0019 22.9 2.4 28 209-236 9-36 (125)
419 PRK06645 DNA polymerase III su 21.6 4E+02 0.0088 25.0 7.2 77 45-124 195-294 (507)
420 smart00386 HAT HAT (Half-A-TPR 21.5 1.2E+02 0.0027 14.9 3.6 16 101-116 1-16 (33)
421 PRK14700 recombination factor 21.4 2.4E+02 0.0052 24.3 5.2 48 202-249 128-178 (300)
422 PF07575 Nucleopor_Nup85: Nup8 21.2 5.7E+02 0.012 24.3 8.3 70 185-256 393-462 (566)
423 KOG0037 Ca2+-binding protein, 21.2 3.5E+02 0.0076 22.0 5.8 46 28-74 124-173 (221)
424 PRK08691 DNA polymerase III su 21.1 2.4E+02 0.0051 27.7 5.6 79 46-127 187-285 (709)
425 PRK14956 DNA polymerase III su 21.0 6.9E+02 0.015 23.3 8.7 39 195-233 246-284 (484)
426 COG0292 RplT Ribosomal protein 21.0 1.4E+02 0.0031 21.3 3.2 9 199-207 75-83 (118)
427 COG3947 Response regulator con 20.9 3.6E+02 0.0078 23.3 6.0 60 234-303 281-340 (361)
428 COG2987 HutU Urocanate hydrata 20.7 1.3E+02 0.0029 27.3 3.6 56 99-154 215-283 (561)
429 TIGR01529 argR_whole arginine 20.4 2.2E+02 0.0048 21.5 4.4 42 202-243 5-46 (146)
430 COG5159 RPN6 26S proteasome re 20.3 5.7E+02 0.012 22.1 9.3 50 98-154 14-63 (421)
431 KOG4567 GTPase-activating prot 20.2 5.9E+02 0.013 22.2 8.1 70 217-300 263-342 (370)
432 PRK09111 DNA polymerase III su 20.2 2.4E+02 0.0051 27.1 5.5 76 47-125 201-296 (598)
433 PRK07003 DNA polymerase III su 20.2 2.8E+02 0.0061 27.6 5.9 89 30-121 163-279 (830)
434 KOG2223 Uncharacterized conser 20.1 1.6E+02 0.0035 26.7 4.0 42 44-86 459-500 (586)
435 cd00280 TRFH Telomeric Repeat 20.0 2.9E+02 0.0064 22.0 5.0 43 203-248 117-159 (200)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-46 Score=353.50 Aligned_cols=278 Identities=20% Similarity=0.317 Sum_probs=237.1
Q ss_pred HHHHHHHhhc---cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccC
Q 044412 28 HIIANQLKKC---SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~---~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ 100 (311)
.+|..++.+| +..+.+++++..|++.|+.||..+||.||++| ++.|+++.|.++|++|++||.++||+ |++.
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y-~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~ 202 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH-VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC
Confidence 3455555555 45556699999999999999999999999999 99999999999999999999999999 9999
Q ss_pred CChhHHHHHHHHHHHCCCCch---------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~---------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a 159 (311)
|++++|+++|++|.+.|+.|+ ++|..+.+.|+.||..+||+||++|+++|++++ |
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~----A 278 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED----A 278 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH----H
Confidence 999999999999999999887 777888899999999999999999999999999 9
Q ss_pred HHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC----CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 044412 160 RRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP----AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 230 (311)
.++|+.|+++|+++||++|.+|++. |.++|++|. .||..||+++|.+|++.|++++|.+++.+|.+.|+.|
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999987 899998884 5899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHh------------------hCChHHHHHHHhhcC----CCCchhHHHHHHHHHh
Q 044412 231 DQVTMATVLSACAHLGALDLGRGIQIY------------------CRSLGRSLLVFFKLR----EKNLLCWNSITEALAI 288 (311)
Q Consensus 231 ~~~t~~~li~a~~~~~~~~~a~~~~~~------------------~~~~~~a~~~~~~~~----~p~~~~~~~li~~~~~ 288 (311)
|..+|++||.+|++.|+++.|.++|+. .|+.++|.++|++|. +||..||+++|.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 999999999999999988877776665 566666666666665 5666666666666666
Q ss_pred cCChHHHHHHHHHHHH-cCCCCC
Q 044412 289 HGFAHEALGMFDRMTY-ENVRPN 310 (311)
Q Consensus 289 ~g~~~~a~~~~~~M~~-~g~~P~ 310 (311)
.|..++|.++|+.|.+ .|+.||
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCC
Confidence 6666666666666654 466665
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-46 Score=360.70 Aligned_cols=277 Identities=26% Similarity=0.429 Sum_probs=250.4
Q ss_pred HHHHHHHhhccChhh---HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKE---LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~---~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ 100 (311)
.+|..++.+|+..++ +++++..|.+.|+.||..++|+||.+| +++|+++.|.++|++|++||.++||+ |++.
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y-~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY-VKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH-hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC
Confidence 345555555554333 367777777777777888889999999 99999999999999999999999999 9999
Q ss_pred CChhHHHHHHHHHHHCCCCch---------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~---------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a 159 (311)
|+.++|+++|++|.+.|+.|| +++..+.+.|+.||..+||+||++|+++|++++ |
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~----A 342 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE----A 342 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH----H
Confidence 999999999999999999999 899999999999999999999999999999999 9
Q ss_pred HHHhccCCCCCHhHHHHHHHHHHH--------------------------------------------------------
Q 044412 160 RRLFDEMPERKFATWNTMIDAYAR-------------------------------------------------------- 183 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~li~~~~~-------------------------------------------------------- 183 (311)
.++|++|.+||.++||++|.+|++
T Consensus 343 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 999999998888888888888877
Q ss_pred --------------H-----HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 184 --------------L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 184 --------------~-----a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
+ |.++|++|.++|+.+||+||.+|++.|+.++|+++|++|.. +++||..||+++|.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 1 77888888888999999999999999999999999999975 699999999999999999
Q ss_pred cCChhhHHHHHHh----------------------hCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 245 LGALDLGRGIQIY----------------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 245 ~~~~~~a~~~~~~----------------------~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.|+++.+.+++.. +|++++|.++|+++ +||+.+||+||.+|+++|+.++|.++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998876 89999999999999 999999999999999999999999999999
Q ss_pred HHcCCCCCC
Q 044412 303 TYENVRPNG 311 (311)
Q Consensus 303 ~~~g~~P~~ 311 (311)
++.|+.||+
T Consensus 581 ~~~g~~Pd~ 589 (857)
T PLN03077 581 VESGVNPDE 589 (857)
T ss_pred HHcCCCCCc
Confidence 999999985
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.1e-45 Score=349.37 Aligned_cols=283 Identities=14% Similarity=0.214 Sum_probs=249.5
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC----CCCeeeeec----cc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ----EPNVFVYHA----FS 98 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~----~~ 98 (311)
+..++..+...++.+.+.++|+.|.+.|+.||..+|+.||.+| ++.|+++.|.++|++|. .||..+|+. |+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y-~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC-AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4666777777788888899999999999999999999999999 99999999999999998 589999999 99
Q ss_pred cCCChhHHHHHHHHHHHCCCCch---------------------HHHHHHHH--hcCCCchhHHHHHHHHHHhCCCCccc
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWK--NGFSSPVFVQTAMVDNYSYSNKFFES 155 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~---------------------~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~~~~a 155 (311)
+.|++++|+++|++|.+.|+.|| +++++|.. .|+.||..+|+++|++|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999998 77888876 57899999999999999999999994
Q ss_pred hHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC----CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 044412 156 RRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP----AWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226 (311)
Q Consensus 156 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (311)
.++...+.+....|+..+||++|.+|++. |.++|++|. .||..+|+++|++|++.|++++|.++|++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 44444444444457778999999999987 899999887 488999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHh----------------------hCChHHHHHHHhhcC----CCCchhHH
Q 044412 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSLLVFFKLR----EKNLLCWN 280 (311)
Q Consensus 227 g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~----------------------~~~~~~a~~~~~~~~----~p~~~~~~ 280 (311)
|+.||..||++||.+|++.|++++|.++|+. .|+.++|.++|++|. .||..||+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999988886 788888888888886 68888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 281 SITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 281 ~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
++|.+|++.|++++|.+++++|.+.|+.||
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 888888888888888888888888888887
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=342.60 Aligned_cols=261 Identities=19% Similarity=0.288 Sum_probs=240.9
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccCCChhHHHHHHHHHHHCCCC
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVL 119 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~ 119 (311)
++++..+.+.|+.||..++|+||++| +++|++++|.++|++|+++|.++||+ |++.|+.++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y-~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMY-SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHH-HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 45555555666667777889999999 99999999999999999999999999 99999999999999999999999
Q ss_pred ch---------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHH
Q 044412 120 LT---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178 (311)
Q Consensus 120 p~---------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li 178 (311)
|| ++++.+.+.|+.||..+||+||++|+++|++++ |.++|++|.++|+++||+||
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~----A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED----ARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH----HHHHHHhCCCCCeeeHHHHH
Confidence 99 889999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHH-----HHHHHhhCC----CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCh
Q 044412 179 DAYARL-----AELLFNKMP----AWDIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 179 ~~~~~~-----a~~~~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
.+|++. |.++|++|. .||..||+++|.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 999997 999999986 59999999999999999999999999999986 69999999999999999999999
Q ss_pred hhHHHHHHh-------------------hCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 249 DLGRGIQIY-------------------CRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 249 ~~a~~~~~~-------------------~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
++|.++++. .|+.+.|..+++++. +| +..+|+.|+.+|++.|++++|.+++++|++.|
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999987 678888888888876 45 47799999999999999999999999999999
Q ss_pred CCC
Q 044412 307 VRP 309 (311)
Q Consensus 307 ~~P 309 (311)
+++
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 864
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-44 Score=343.69 Aligned_cols=250 Identities=18% Similarity=0.219 Sum_probs=218.3
Q ss_pred cchhHHHHHHHHHhhccCChhHHHHhcccCC----CCCeeeeec----cccCCChhHHHHHHHHHHHCCCCch-------
Q 044412 57 LDCFLAKQFISFCTSRFHFIDYTILVFPQMQ----EPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLT------- 121 (311)
Q Consensus 57 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~------- 121 (311)
||..+|+.+|.+| ++.|+++.|.++|++|. .||..+|++ |++.|++++|.++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~a~-~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVC-ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7778888888888 88888888888888886 477788877 8888888888888888888888888
Q ss_pred --------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccC------CCCCHhHHHHHHHHH
Q 044412 122 --------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM------PERKFATWNTMIDAY 181 (311)
Q Consensus 122 --------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~------~~~~~~~~~~li~~~ 181 (311)
.+++.|.+.|+.||..+||.||.+|++.|++++ |.++|++| ..||.++|+++|.+|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de----A~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR----AFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 777888888888888888888888888888888 55555555 357888999999998
Q ss_pred HHH-----HHHHHhhCC----CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHH
Q 044412 182 ARL-----AELLFNKMP----AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252 (311)
Q Consensus 182 ~~~-----a~~~~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~ 252 (311)
+++ |.++|++|. .|+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 887 888888886 36778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh----------------------hCChHHHHHHHhhcC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 253 GIQIY----------------------CRSLGRSLLVFFKLR----EKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 253 ~~~~~----------------------~~~~~~a~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
++|+. +|+.++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 98888 789999999999995 7999999999999999999999999999999999
Q ss_pred CCCCC
Q 044412 307 VRPNG 311 (311)
Q Consensus 307 ~~P~~ 311 (311)
+.||.
T Consensus 750 i~Pd~ 754 (1060)
T PLN03218 750 LCPNT 754 (1060)
T ss_pred CCCCH
Confidence 99983
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-44 Score=346.20 Aligned_cols=301 Identities=16% Similarity=0.209 Sum_probs=273.7
Q ss_pred hHHHHHhhhhhcCCCCCch--------------hhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHh
Q 044412 5 YVRAIITSFKKNSFPTSVS--------------FIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT 70 (311)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~ 70 (311)
.++.+|++|.+.+.+.... ..++.+++..+...++.+.+++++..|.+.|+.||..+||+||.+|
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y- 333 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY- 333 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH-
Confidence 3567777777766443222 1123445555555566667799999999999999999999999999
Q ss_pred hccCChhHHHHhcccCCCCCeeeeec----cccCCChhHHHHHHHHHHHCCCCch---------------------HHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLT---------------------TVHG 125 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~---------------------~~~~ 125 (311)
++.|++++|.++|++|.+||..+||+ |++.|++++|+++|++|.+.|+.|| ++++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999 8999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcH
Q 044412 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP---AWDI 197 (311)
Q Consensus 126 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~ 197 (311)
.+.+.|+.|+..+||+||++|+++|++++ |.++|++|.++|+++||++|.+|++. |.++|++|. .||.
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~----A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~ 489 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDK----ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHH----HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999 99999999999999999999999987 999999986 5999
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh-----------------hCC
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-----------------CRS 260 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~-----------------~~~ 260 (311)
.||+++|.+|++.|.++.+.+++..|.+.|+.||..++++||.+|++.|+++.|..+|+. .|+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999998876 789
Q ss_pred hHHHHHHHhhcC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCC
Q 044412 261 LGRSLLVFFKLR----EKNLLCWNSITEALAIHGFAHEALGMFDRMT-YENVRPN 310 (311)
Q Consensus 261 ~~~a~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~-~~g~~P~ 310 (311)
.++|.++|++|. +||..||+.+|.+|++.|++++|.++|++|+ +.|+.||
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 999999999997 7999999999999999999999999999999 6899997
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.68 E-value=1.4e-14 Score=129.12 Aligned_cols=261 Identities=10% Similarity=0.068 Sum_probs=170.7
Q ss_pred HhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCC-Cee------eeec----cccCCC
Q 044412 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP-NVF------VYHA----FSSLRH 102 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~-~~~------~~~~----~~~~~~ 102 (311)
....++.+.+...+..+.+.+ +.+..++..+...+ .+.|++++|..+++.+... +.. .+.. +.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLF-RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH-HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345677777888888887763 23455777777777 8888888888888776542 111 1111 677788
Q ss_pred hhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH----hHHHHHH
Q 044412 103 PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF----ATWNTMI 178 (311)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~----~~~~~li 178 (311)
+++|+++|+++.+.. +.+..+++.+...|.+.|++++|.+....+.+..+.+.. ..|..+.
T Consensus 123 ~~~A~~~~~~~l~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 123 LDRAEELFLQLVDEG---------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHcCC---------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 888888888876532 345566777777777777777744443333332222211 1223333
Q ss_pred HHHHHH-----HHHHHhhCCC--C-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 179 DAYARL-----AELLFNKMPA--W-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 179 ~~~~~~-----a~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
..+.+. |...|+++.+ | +...+..+...+.+.|++++|.++|+++.+.+-.....+++.+..+|...|+.++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 333332 6666665532 2 3445666667777777777777777777654322224556677777777777777
Q ss_pred HHHHHHh--------------------hCChHHHHHHHhhcC--CCCchhHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 044412 251 GRGIQIY--------------------CRSLGRSLLVFFKLR--EKNLLCWNSITEALAI---HGFAHEALGMFDRMTYE 305 (311)
Q Consensus 251 a~~~~~~--------------------~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~~---~g~~~~a~~~~~~M~~~ 305 (311)
|...++. .|+.++|..+|+++. .|+..+++.++..+.. .|+.+++..++++|.+.
T Consensus 268 A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 268 GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 7766665 566777888887665 6899999999988875 56899999999999999
Q ss_pred CCCCCC
Q 044412 306 NVRPNG 311 (311)
Q Consensus 306 g~~P~~ 311 (311)
+++|+.
T Consensus 348 ~~~~~p 353 (389)
T PRK11788 348 QLKRKP 353 (389)
T ss_pred HHhCCC
Confidence 988874
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.63 E-value=9.6e-16 Score=94.30 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=48.9
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999986
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=3e-12 Score=125.37 Aligned_cols=267 Identities=11% Similarity=0.036 Sum_probs=178.4
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~ 100 (311)
..+...+...|+...+..+++.+.+.. +.++.+|..+...+ .+.|++++|...|+++.+ |+ ...+.. +.+.
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 456666777778888877777776543 45667777778888 888888888888877643 22 222222 6667
Q ss_pred CChhHHHHHHHHHHHCCCCch----------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLT----------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV 158 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~----------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 158 (311)
|++++|.+.|+++.+.. |+ .+.+.+.+.+ +.+...+..+...|.+.|++++|...
T Consensus 649 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 649 KNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 77888888877776532 22 2222232222 34556666677777777777773333
Q ss_pred HHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 044412 159 SRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230 (311)
Q Consensus 159 a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 230 (311)
....+..- |+..++..+...+.+. |.+.++.+. ..+...++.+...|...|+.++|...|+++.+.. +.
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~ 802 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD 802 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence 33333322 3334455555555543 555555543 2356778888888888888888888888887753 45
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC---CCCchhHHHHHHHH
Q 044412 231 DQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR---EKNLLCWNSITEAL 286 (311)
Q Consensus 231 ~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~---~p~~~~~~~li~~~ 286 (311)
+..+++.+...+...|+ .+|...++. .|+.++|...|+++. ..+..++..+..++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 67778888888888888 667766665 677888888888777 23677888888888
Q ss_pred HhcCChHHHHHHHHHHH
Q 044412 287 AIHGFAHEALGMFDRMT 303 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~ 303 (311)
.+.|++++|..++++|.
T Consensus 882 ~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 882 LATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 88999999988888876
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.53 E-value=3.2e-12 Score=125.17 Aligned_cols=167 Identities=7% Similarity=-0.046 Sum_probs=94.1
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC---CCCHhHHHHHHHHHHHH-----HHHHHhhCCC---CcHhHHH
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP---ERKFATWNTMIDAYARL-----AELLFNKMPA---WDIRSWT 201 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~---~~~~~~~~~li~~~~~~-----a~~~~~~m~~---~~~~~y~ 201 (311)
+.+..+|..+..+|.+.|++++ |...++.+. ..+...+..+...+.+. |...|+++.+ .+..+|.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNK----AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4455667777777777777777 444444332 12334555555555443 5555554431 2455666
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh--------------------hCCh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------CRSL 261 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~--------------------~~~~ 261 (311)
.+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...++. .|+.
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 66666666666666666666665543 33445555555666666666666655554 4455
Q ss_pred HHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 262 GRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 262 ~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
++|.+.++++. ..+...++.+...|...|++++|..+|+++.+
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55555555543 22345555566666666666666666666554
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.47 E-value=9.5e-12 Score=110.94 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=168.8
Q ss_pred hccCChhHHHHhcccCCCCCee---eeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPNVF---VYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMV 143 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~~~---~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll 143 (311)
...|+++.|...|+++.+.+.. ++.. +.+.|++++|.++++.+...+..+. ......+..+.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------~~~~~~~~~La 114 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR-----------EQRLLALQELG 114 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-----------HHHHHHHHHHH
Confidence 5679999999999999753322 2222 7889999999999999876421000 01135688899
Q ss_pred HHHHhCCCCccchHHHHHHhccCCC---CCHhHHHHHHHHHHHH-----HHHHHhhCCC--Cc------HhHHHHHHHHH
Q 044412 144 DNYSYSNKFFESRRVSRRLFDEMPE---RKFATWNTMIDAYARL-----AELLFNKMPA--WD------IRSWTTMITSY 207 (311)
Q Consensus 144 ~~~~~~g~~~~a~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-----a~~~~~~m~~--~~------~~~y~~li~~~ 207 (311)
..|.+.|++++ |..+|+.+.+ .+..+++.+...+.+. |.+.++.+.. |+ ...|..+...+
T Consensus 115 ~~~~~~g~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 115 QDYLKAGLLDR----AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHCCCHHH----HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 99999999999 7677766654 4567888888888876 7788877753 21 22456777888
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh----------------------hCChHHHH
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------CRSLGRSL 265 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~----------------------~~~~~~a~ 265 (311)
...|++++|..+|+++.+.. +.+...+..+...+.+.|++++|..+++. .|+.++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999998753 33456788888999999999999988877 57778888
Q ss_pred HHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 266 LVFFKLR--EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 266 ~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..++++. .|+...+..+...+.+.|++++|..+++++.+.
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888766 677777888899999999999999999988764
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=7e-11 Score=100.77 Aligned_cols=251 Identities=13% Similarity=0.156 Sum_probs=170.6
Q ss_pred hhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHh-hccCChhHH-HHhcccCC---CCCeeeeec-------------
Q 044412 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCT-SRFHFIDYT-ILVFPQMQ---EPNVFVYHA------------- 96 (311)
Q Consensus 35 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~g~~~~a-~~~~~~m~---~~~~~~~~~------------- 96 (311)
.+.+.+++.--+|+.|.+.|+..++..--.|+..-+ ....++-.| ++.|-.|. +....+|..
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 456788899999999999999888877766665431 344444433 44555554 233344433
Q ss_pred -----------cccCCChhHHHHHHHHHHHCCCCch-----------------HHHHHHHHhcCCCchhHHHHHHHHHHh
Q 044412 97 -----------FSSLRHPLQAIAFYLYMLRAEVLLT-----------------TVHGQVWKNGFSSPVFVQTAMVDNYSY 148 (311)
Q Consensus 97 -----------~~~~~~~~~a~~~~~~m~~~~~~p~-----------------~~~~~~~~~g~~~~~~~~~~ll~~~~~ 148 (311)
+|+-...+.|.++|++-.....+.+ ++..+|+...+.||..|+|+++++..+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 6677788999999998877655444 777788888888888888888888888
Q ss_pred CCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH-HHHHHHHHHh--
Q 044412 149 SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE-ALDAFNKTKK-- 225 (311)
Q Consensus 149 ~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~-a~~~~~~m~~-- 225 (311)
.|+++.|+..|.+++.+|++-++ +|...+|.-+|..+++.+++.+ |..++.++..
T Consensus 286 fg~F~~ar~aalqil~EmKeiGV----------------------ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGV----------------------EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCC----------------------CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 88888877777777777665433 5566666666666666655543 3333333322
Q ss_pred --cCCC---C-CHHHHHHHHHHHhccCChhhHHHHHHh-----------------------------hCChHHHHHHHhh
Q 044412 226 --SGTG---S-DQVTMATVLSACAHLGALDLGRGIQIY-----------------------------CRSLGRSLLVFFK 270 (311)
Q Consensus 226 --~g~~---p-~~~t~~~li~a~~~~~~~~~a~~~~~~-----------------------------~~~~~~a~~~~~~ 270 (311)
+.++ | |..-|...++.|.+..+.+.|.++... +...+.-...++.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 2 223455556666666666666665554 4444566677777
Q ss_pred cC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 271 LR----EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 271 ~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
|. -|+..+...++++....|+++-.-+++.+|+..|-
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 76 58888999999999999999999999999988773
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=6.8e-10 Score=94.88 Aligned_cols=120 Identities=12% Similarity=0.159 Sum_probs=99.1
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC----CCCHhHHHHHHHHHHHH-HHHHHhhCC----CCcH
Q 044412 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP----ERKFATWNTMIDAYARL-AELLFNKMP----AWDI 197 (311)
Q Consensus 127 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~----~~~~~~~~~li~~~~~~-a~~~~~~m~----~~~~ 197 (311)
+.-.-.+.+..+|.++|.+.|+....+. |.+++++-. +-+..+||.+|.+-.-. .++++.+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ER----A~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLER----ARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHH----HHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCch
Confidence 4444467778999999999999999999 666665543 35667899998877655 677777775 5999
Q ss_pred hHHHHHHHHHHhCCChhH----HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 198 RSWTTMITSYSQNKQFRE----ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
.|+|+++++.++.|+++. |.+++.+|++-|++|...+|..+|.-+++-++..+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 999999999999998765 45789999999999999999999999999888754
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=7.5e-11 Score=72.30 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=32.8
Q ss_pred CchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC----CCHhHHHHHHHHHH
Q 044412 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE----RKFATWNTMIDAYA 182 (311)
Q Consensus 134 ~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~----~~~~~~~~li~~~~ 182 (311)
||..+||++|++|++.|++++ |.++|++|.+ ||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~----a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEE----ALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 899999999999999999999 6666665554 44444444444443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.11 E-value=5.4e-08 Score=92.32 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=68.5
Q ss_pred cHhHHHHHHHHHHhCCChhH----HHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHh-------------
Q 044412 196 DIRSWTTMITSYSQNKQFRE----ALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIY------------- 257 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~------------- 257 (311)
+...+..+-..+...|++++ |...|++..+. .| +...+..+-..+...|++++|...++.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34455556666666666664 56666666553 23 344566666666666666666666655
Q ss_pred --------hCChHHHHHHHhhcC--CCCchh-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 258 --------CRSLGRSLLVFFKLR--EKNLLC-WNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 258 --------~~~~~~a~~~~~~~~--~p~~~~-~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|+.++|...|+++. .|+... +..+..++...|+.++|...|++..+
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566667777777666 455433 33345678888899998888888765
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.08 E-value=8.3e-08 Score=91.03 Aligned_cols=259 Identities=12% Similarity=-0.019 Sum_probs=186.9
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeee-eec----ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFV-YHA----FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~-~~~----~~~ 99 (311)
...++..+...|+..++..++.........+....+... .+. ...|+++.|...|+++.+ |+... +.. +..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~-~~~-l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWV-ISP-LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHh-hhH-hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 346677777889999999999888887665544455444 555 679999999999999863 44322 222 788
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
.|+.++|+..|++.... -+.+...+..+...+...|++++|......+...-+.+.. .+..+..
T Consensus 123 ~g~~~~Ai~~l~~Al~l---------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~~ 186 (656)
T PRK15174 123 SKQYATVADLAEQAWLA---------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCLS 186 (656)
T ss_pred cCCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 99999999999998763 1334678888999999999999955544444443333322 2322222
Q ss_pred HHHHH-----HHHHHhhCCC----CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 180 AYARL-----AELLFNKMPA----WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 180 ~~~~~-----a~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
+... |...++.+.. ++...+..+...+...|++++|+..|++..+.. +-+...+..+-..+...|+.++
T Consensus 187 -l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 -FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred -HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchh
Confidence 3332 7777766543 234455566778889999999999999998753 3356677888889999999986
Q ss_pred ----HHHHHHh---------------------hCChHHHHHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 251 ----GRGIQIY---------------------CRSLGRSLLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 251 ----a~~~~~~---------------------~~~~~~a~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
|...++. .|+.++|...+++.. .|+ ...+..+...+.+.|++++|...|+++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777766 688888888888766 444 456777888899999999999999888
Q ss_pred HHc
Q 044412 303 TYE 305 (311)
Q Consensus 303 ~~~ 305 (311)
...
T Consensus 345 l~~ 347 (656)
T PRK15174 345 ARE 347 (656)
T ss_pred HHh
Confidence 753
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.01 E-value=3.7e-08 Score=93.13 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=155.7
Q ss_pred cChhhHHHHHHHHHHhc-cCc-chhHHHHHHHHHhhccCChhHHHHhcccCCC--CCee-eeec----cccCCChhHHHH
Q 044412 38 SSIKELECVYATIVKTN-ANL-DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVF-VYHA----FSSLRHPLQAIA 108 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g-~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~-~~~~----~~~~~~~~~a~~ 108 (311)
++..++...++..++.+ ..| +...++.+-.++ ...|++++|...|++..+ |+.. .|.. +...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~-~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK-CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666777888887765 234 345667777777 889999999999998754 4322 2222 778899999999
Q ss_pred HHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--C-CHhHHHHHHHHHHHH-
Q 044412 109 FYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--R-KFATWNTMIDAYARL- 184 (311)
Q Consensus 109 ~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~- 184 (311)
.|++..+.. +-+..+|..+-..|...|++++ |...|+...+ | +...+..+-..+.+.
T Consensus 387 ~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~----A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 387 DFDKALKLN---------------SEDPDIYYHRAQLHFIKGEFAQ----AGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 999886532 3457788899999999999999 5555554432 2 344455454444433
Q ss_pred ----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH------HHHHHHHHHhccCChhhH
Q 044412 185 ----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV------TMATVLSACAHLGALDLG 251 (311)
Q Consensus 185 ----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~li~a~~~~~~~~~a 251 (311)
|...|++.. .| +...|+.+-..+...|++++|++.|++-.+..-..+.. .++.....+...|+++
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~-- 525 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI-- 525 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH--
Confidence 666666543 23 46678888888888999999999998877632111111 1111111222235555
Q ss_pred HHHHHhhCChHHHHHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 252 RGIQIYCRSLGRSLLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+|.+.+++.. .|+ ...+..+...+...|++++|..+|++..+
T Consensus 526 -----------eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 526 -----------EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred -----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555554432 343 45788999999999999999999998754
No 18
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.92 E-value=1.2e-08 Score=94.34 Aligned_cols=185 Identities=8% Similarity=0.038 Sum_probs=117.7
Q ss_pred CCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH----hHHHHHHHHHHHHHHHHHhh
Q 044412 116 AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF----ATWNTMIDAYARLAELLFNK 191 (311)
Q Consensus 116 ~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~----~~~~~li~~~~~~a~~~~~~ 191 (311)
.+..|+.++..+...|+.|+..||.++|.-||..|+++. |- +|.-|...+. ..++.++.+..... + .+.
T Consensus 5 ~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdiea----at-if~fm~~ksLpv~e~vf~~lv~sh~~An-d-~En 77 (1088)
T KOG4318|consen 5 VKFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEA----AT-IFPFMEIKSLPVREGVFRGLVASHKEAN-D-AEN 77 (1088)
T ss_pred cccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcc----cc-chhhhhcccccccchhHHHHHhcccccc-c-ccC
Confidence 345677788888889999999999999999999999999 77 7877765433 45666666654430 0 001
Q ss_pred CCCCcHhHHHHHHHHHHhCCChhH---HHHHHHHHH----hcCC-----------------CCCHHHHHHHHHHHhccCC
Q 044412 192 MPAWDIRSWTTMITSYSQNKQFRE---ALDAFNKTK----KSGT-----------------GSDQVTMATVLSACAHLGA 247 (311)
Q Consensus 192 m~~~~~~~y~~li~~~~~~g~~~~---a~~~~~~m~----~~g~-----------------~p~~~t~~~li~a~~~~~~ 247 (311)
-.+|...||+.|..+|...|++.. +.+.+.... ..|+ -||..+ ++.-....|.
T Consensus 78 pkep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~egl 154 (1088)
T KOG4318|consen 78 PKEPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGL 154 (1088)
T ss_pred CCCCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHH
Confidence 115678899999999999999754 333222221 1232 222222 1111222333
Q ss_pred hhhHHHHHHh--------------------hCChHHHHHHHhhcC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 248 LDLGRGIQIY--------------------CRSLGRSLLVFFKLR-EKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 248 ~~~a~~~~~~--------------------~~~~~~a~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
++.+.++... ...+++-...-.... .|++.+|.+++++-..+|+.+.|..++.+|+++|
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 3433333322 111111111111111 3899999999999999999999999999999999
Q ss_pred CCCC
Q 044412 307 VRPN 310 (311)
Q Consensus 307 ~~P~ 310 (311)
+..+
T Consensus 235 fpir 238 (1088)
T KOG4318|consen 235 FPIR 238 (1088)
T ss_pred CCcc
Confidence 8654
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=1.9e-09 Score=59.84 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=29.4
Q ss_pred CCcHhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044412 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 194 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 224 (311)
.||..|||+||++||+.|++++|+++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6899999999999999999999999999984
No 20
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=1.4e-09 Score=60.38 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=31.4
Q ss_pred hcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC
Q 044412 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167 (311)
Q Consensus 130 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~ 167 (311)
.|+.||..|||+||++||+.|++++ |.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~----A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDE----AFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHH----HHHHHHhCc
Confidence 3789999999999999999999999 999998874
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=2.1e-06 Score=86.95 Aligned_cols=262 Identities=11% Similarity=0.081 Sum_probs=166.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCee------------eee
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF------------VYH 95 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~------------~~~ 95 (311)
..+..++...|+.+++.+.++...+.. +.+...+..+...+ . .++.++|..+++.+...... .+.
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~-~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY-R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 356667777788888888887777653 22344555555555 4 35677887777766532100 011
Q ss_pred c----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC
Q 044412 96 A----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 96 ~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
. +...|++++|++.|++..+. .| +...+..+...|.+.|++++|+...+++.+.-+...
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLAL----------------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 1 55678888888888887653 33 355666777778888888884444444433222111
Q ss_pred HhHHHHH-------------------------------------------HHHHHHH-----HHHHHhhCCCCcHhHHHH
Q 044412 171 FATWNTM-------------------------------------------IDAYARL-----AELLFNKMPAWDIRSWTT 202 (311)
Q Consensus 171 ~~~~~~l-------------------------------------------i~~~~~~-----a~~~~~~m~~~~~~~y~~ 202 (311)
...|..- ...+... |..+++.- ..+...+..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~ 608 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHH
Confidence 1111100 0001110 44444422 224445666
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCCh
Q 044412 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSL 261 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~ 261 (311)
+-..+.+.|+.++|++.|++..+.. +-+...+..+...+...|+.++|...++. .|+.
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 7788888899999999999988752 33567888888999999999999988877 7888
Q ss_pred HHHHHHHhhcCC--CC-------chhHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCC
Q 044412 262 GRSLLVFFKLRE--KN-------LLCWNSITEALAIHGFAHEALGMFDRMT-YENVRPN 310 (311)
Q Consensus 262 ~~a~~~~~~~~~--p~-------~~~~~~li~~~~~~g~~~~a~~~~~~M~-~~g~~P~ 310 (311)
++|.++|++..+ |+ ...+..+...+...|++++|...|++.. ..|+.|+
T Consensus 688 ~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 888888888752 21 1345555677888999999999988864 4567654
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.85 E-value=9e-07 Score=79.14 Aligned_cols=240 Identities=9% Similarity=-0.033 Sum_probs=169.7
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHH-HHHHhhccCChhHHHHhcccCCC--CCeeeee----c--cccCCChhHHHH
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQF-ISFCTSRFHFIDYTILVFPQMQE--PNVFVYH----A--FSSLRHPLQAIA 108 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~l-l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~----~--~~~~~~~~~a~~ 108 (311)
|++..+++......+. .+++..+-.+ ..+. .+.|+.+.|...+.++.+ |+..... . +...|++++|++
T Consensus 98 Gd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA-~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADH--AEQPVVNYLLAAEAA-QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhc--ccchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 6777777555543332 2223333333 2333 789999999999999864 3332221 1 788999999999
Q ss_pred HHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC---H--------hHHHHH
Q 044412 109 FYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK---F--------ATWNTM 177 (311)
Q Consensus 109 ~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~---~--------~~~~~l 177 (311)
.++++.+.. +-++.....+...|.+.|++++ +..++..+.+.. . .+|..+
T Consensus 175 ~l~~~~~~~---------------P~~~~al~ll~~~~~~~gdw~~----a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 175 GVDKLLEVA---------------PRHPEVLRLAEQAYIRTGAWSS----LLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHhcC---------------CCCHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999997752 4457888999999999999999 555555544321 1 123233
Q ss_pred HHHHHHH-----HHHHHhhCCC---CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 178 IDAYARL-----AELLFNKMPA---WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 178 i~~~~~~-----a~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
+...... ..++++.++. .+......+...+...|+.++|.+++++..+. +||... .++.+....++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChH
Confidence 3222222 4455555542 36778888999999999999999999998873 555532 2345555668888
Q ss_pred hHHHHHHh---------------------hCChHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 250 LGRGIQIY---------------------CRSLGRSLLVFFKLR--EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 250 ~a~~~~~~---------------------~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.+.+..+. .++.+.|.+.|+... .|+..+|-.|-..+.+.|+.++|..++++-.
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88777765 888999999999887 7999999999999999999999999998754
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=2.6e-08 Score=84.75 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=49.5
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHh-----------------
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIY----------------- 257 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~----------------- 257 (311)
+...|..+...+.+.|+.++|++.+++..+. .|+ ....+.++..+...|+.+++..++..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4455555556666666666666666665553 343 44555566666666666655444433
Q ss_pred ----hCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 258 ----CRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 258 ----~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.|+.++|...|++.. ..|+.+...+.+++...|+.++|..+..+.
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred Hhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 444445555555544 236666677777777777777777766554
No 24
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=1.1e-06 Score=72.98 Aligned_cols=248 Identities=12% Similarity=0.114 Sum_probs=174.9
Q ss_pred cChhhHHHHHHHHHHhccCcchhHH---HHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-----------cccCCCh
Q 044412 38 SSIKELECVYATIVKTNANLDCFLA---KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-----------FSSLRHP 103 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~---~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~~~ 103 (311)
.+++.+..+|-.|.+. |+.|+ -+|=+.| .+.|.+|.|..+.+.+.+....|++- |...|-+
T Consensus 49 ~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 49 NQPDKAVDLFLEMLQE----DPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred cCcchHHHHHHHHHhc----CchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3556667788888873 44444 3455777 88999999999999876544445544 8999999
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
+.|.++|..+.+.| .--......|+.-|-...++++|.++|+++.....++..+- +-..||.
T Consensus 124 DRAE~~f~~L~de~---------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAqfyCE 185 (389)
T COG2956 124 DRAEDIFNQLVDEG---------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQFYCE 185 (389)
T ss_pred hHHHHHHHHHhcch---------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHHHHHH
Confidence 99999999997754 22344567899999999999999999999888777654321 1222332
Q ss_pred H------------HHHHHhhCCC--CcHhHHHH-HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 184 L------------AELLFNKMPA--WDIRSWTT-MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 184 ~------------a~~~~~~m~~--~~~~~y~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
. |..++.+-.+ |+.+=-++ +-+.....|+++.|.+.++...+.+...-+.+...|..+|...|+.
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 2 5555554432 32222222 3355667799999999999999987777778899999999999999
Q ss_pred hhHHHHHHh--------------------hCChHHHHHHHh-hcC-CCCchhHHHHHHHHHhc---CChHHHHHHHHHHH
Q 044412 249 DLGRGIQIY--------------------CRSLGRSLLVFF-KLR-EKNLLCWNSITEALAIH---GFAHEALGMFDRMT 303 (311)
Q Consensus 249 ~~a~~~~~~--------------------~~~~~~a~~~~~-~~~-~p~~~~~~~li~~~~~~---g~~~~a~~~~~~M~ 303 (311)
++....+.. ..-.+.|...+. .+. +|+...+..+|+..... |...+-+.++++|.
T Consensus 266 ~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 266 AEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 998887777 222223333322 333 89999999999987754 45677788888887
Q ss_pred HcCCC
Q 044412 304 YENVR 308 (311)
Q Consensus 304 ~~g~~ 308 (311)
...++
T Consensus 346 ge~l~ 350 (389)
T COG2956 346 GEQLR 350 (389)
T ss_pred HHHHh
Confidence 65443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.78 E-value=1.1e-05 Score=77.83 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=57.2
Q ss_pred hhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------cccCCChhHHH
Q 044412 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------FSSLRHPLQAI 107 (311)
Q Consensus 35 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~~~~a~ 107 (311)
-..|+...+...+.+..+..-.-.+.++ .++..+ ...|+.++|...+++...|+...+.. +...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~-~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIA-GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHH-HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3557777777777777665422222344 777888 88899999999998887665555544 56778999999
Q ss_pred HHHHHHHHC
Q 044412 108 AFYLYMLRA 116 (311)
Q Consensus 108 ~~~~~m~~~ 116 (311)
++|+++.+.
T Consensus 123 ely~kaL~~ 131 (822)
T PRK14574 123 ALWQSSLKK 131 (822)
T ss_pred HHHHHHHhh
Confidence 999998765
No 26
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.77 E-value=1.5e-08 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPNG 311 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~~ 311 (311)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 27
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.75 E-value=1.8e-08 Score=56.47 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 232 (311)
.+||+||.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.74 E-value=5.4e-07 Score=83.75 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeee----eec----cccCCChhHHHHHHHHHHH
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV----YHA----FSSLRHPLQAIAFYLYMLR 115 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~----~~~~~~~~~a~~~~~~m~~ 115 (311)
..++..+...|+.|+..||.++|.-| +..|+++.|- +|.-|+-.+..+ ++. ...+++.+.+
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarY-c~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp--------- 78 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARY-CTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP--------- 78 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHH-cccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC---------
Confidence 35677888999999999999999999 9999999998 998887544332 222 3334443332
Q ss_pred CCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCcc
Q 044412 116 AEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154 (311)
Q Consensus 116 ~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 154 (311)
-.|..-+|+.|+.+|.+.||+..
T Consensus 79 ----------------kep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 79 ----------------KEPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ----------------CCCchhHHHHHHHHHHhccchHH
Confidence 25677899999999999999776
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.72 E-value=1.1e-06 Score=71.90 Aligned_cols=195 Identities=10% Similarity=-0.020 Sum_probs=135.2
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHh
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 130 (311)
....+..+...+ .+.|+++.|.+.+++..+ |+ ...+.. +...|++++|.+.|++..+..
T Consensus 30 ~~~~~~~la~~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 95 (234)
T TIGR02521 30 AAKIRVQLALGY-LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------------- 95 (234)
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 345666777777 888888888888877643 22 122222 777888888888888876532
Q ss_pred cCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhC
Q 044412 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 131 g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~ 210 (311)
+.+...+..+...|...|++++ |...++....... .......+..+...+...
T Consensus 96 --~~~~~~~~~~~~~~~~~g~~~~----A~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 96 --PNNGDVLNNYGTFLCQQGKYEQ----AMQQFEQAIEDPL---------------------YPQPARSLENAGLCALKA 148 (234)
T ss_pred --CCCHHHHHHHHHHHHHcccHHH----HHHHHHHHHhccc---------------------cccchHHHHHHHHHHHHc
Confidence 3445677778888889999999 5555554322100 011344566677888899
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g 290 (311)
|++++|...+.+..+.. +.+...+..+...+...|++++|...++..... ...+...+..+...+...|
T Consensus 149 g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 149 GDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT----------YNQTAESLWLGIRIARALG 217 (234)
T ss_pred CCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHh
Confidence 99999999999987742 234567888888888999998777665432211 1345667778888888999
Q ss_pred ChHHHHHHHHHHHH
Q 044412 291 FAHEALGMFDRMTY 304 (311)
Q Consensus 291 ~~~~a~~~~~~M~~ 304 (311)
+.++|..+.+.+..
T Consensus 218 ~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 218 DVAAAQRYGAQLQK 231 (234)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999888765
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.71 E-value=6.1e-08 Score=82.52 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=79.8
Q ss_pred HHHHHHhhccCChhHHHHhccc-CCC---CCeeee-ec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC
Q 044412 64 QFISFCTSRFHFIDYTILVFPQ-MQE---PNVFVY-HA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS 134 (311)
Q Consensus 64 ~ll~~~~~~~g~~~~a~~~~~~-m~~---~~~~~~-~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~ 134 (311)
.+-..+ .+.|++++|+++++. ... |+...| .. ....++.++|.+.|+++...+ .-
T Consensus 13 ~~A~~~-~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---------------~~ 76 (280)
T PF13429_consen 13 RLARLL-YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---------------KA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------cc
Confidence 445667 888999999999954 322 333333 22 556788999999999987653 22
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..++.. ...+++++|.++++..++. .++...+..++..+...++++
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYER----------------------------DGDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccc-ccccccccccccccccccc----------------------------ccccchhhHHHHHHHHHhHHH
Confidence 56677777777 7889999955555444443 234556777888899999999
Q ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC
Q 044412 215 EALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR 272 (311)
Q Consensus 215 ~a~~~~~~m~~~g-~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~ 272 (311)
++.++++...... .+++...|..+-..+.+.|+.++|..+++. .|+.+++.++++...
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999987533 456778888899999999999999999988 677777666666655
Q ss_pred ---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 273 ---EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 273 ---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|...|..+-.+|...|+.++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 45677889999999999999999999999765
No 31
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.70 E-value=3.2e-08 Score=55.08 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P 309 (311)
+.+||++|.+|++.|+++.|..+|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999998
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.68 E-value=1.2e-05 Score=81.53 Aligned_cols=176 Identities=10% Similarity=-0.007 Sum_probs=112.4
Q ss_pred HHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeee---e---------ec-
Q 044412 32 NQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFV---Y---------HA- 96 (311)
Q Consensus 32 ~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~---~---------~~- 96 (311)
..+...|+..++...++..++.. +-+...+..+-..+ .+.|+.++|...|++..+ |+... | ..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~-~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAY-SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34455688888888888888753 23677888888899 999999999999988653 33211 1 01
Q ss_pred ------cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC
Q 044412 97 ------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 97 ------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
+.+.|++++|++.|++..+.. +.+...+..+-..|...|++++|++...++++.-+. +
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~---------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~ 418 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD---------------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-N 418 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 568899999999999987642 334556667777888888888844433333332121 2
Q ss_pred HhHHHHHHHHHH------------------------------------------HH-----HHHHHhhCC--CC-cHhHH
Q 044412 171 FATWNTMIDAYA------------------------------------------RL-----AELLFNKMP--AW-DIRSW 200 (311)
Q Consensus 171 ~~~~~~li~~~~------------------------------------------~~-----a~~~~~~m~--~~-~~~~y 200 (311)
...+..+...|. .. |.+.|++.. .| +...+
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~ 498 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLT 498 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 222222222211 10 444454443 23 34556
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
..+...|.+.|++++|...+++..+
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677778888888888888888765
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.67 E-value=1.2e-05 Score=72.25 Aligned_cols=247 Identities=9% Similarity=-0.098 Sum_probs=162.0
Q ss_pred hccChhhHHHHHHHHHHhccCcchhHHHHH-HHHHhhccCChhHHHHhcccCCC--CCeee-----eec-cccCCChhHH
Q 044412 36 KCSSIKELECVYATIVKTNANLDCFLAKQF-ISFCTSRFHFIDYTILVFPQMQE--PNVFV-----YHA-FSSLRHPLQA 106 (311)
Q Consensus 36 ~~~~~~~~~~l~~~m~~~g~~p~~~~~~~l-l~~~~~~~g~~~~a~~~~~~m~~--~~~~~-----~~~-~~~~~~~~~a 106 (311)
..|+++.+++......+. .|++..+-.+ -.+. .+.|+.+.|.+.+++..+ |+... +.. +...|++++|
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa-~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAA-QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 346777777777655444 4665544444 3555 788999999999988642 33221 111 6778999999
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCC-CHh------HHHHHHH
Q 044412 107 IAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER-KFA------TWNTMID 179 (311)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~-~~~------~~~~li~ 179 (311)
.+.++.+.+.. +-+..+...+...|...|++++|.+....+.+..... ... .+..++.
T Consensus 173 l~~l~~l~~~~---------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 173 RHGVDKLLEMA---------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999998753 3457788899999999999999555444444442221 111 1211121
Q ss_pred HHHH-----HHHHHHhhCCC---CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHhccCCh
Q 044412 180 AYAR-----LAELLFNKMPA---WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT---MATVLSACAHLGAL 248 (311)
Q Consensus 180 ~~~~-----~a~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~a~~~~~~~ 248 (311)
.-.. .....++..+. .+...+-.+...+...|+.++|.+++++..+. .||... ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCCh
Confidence 1111 13334444443 37888999999999999999999999999875 344432 11111122233555
Q ss_pred hhHHHHHHh-----------------------hCChHHHHHHHhh--c-C-CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 249 DLGRGIQIY-----------------------CRSLGRSLLVFFK--L-R-EKNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 249 ~~a~~~~~~-----------------------~~~~~~a~~~~~~--~-~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
+.+.+.++. .|+.++|.+.|+. . . .|+...+..+...+.+.|+.++|.+++++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554433 7888888888883 3 2 68888888899999999999999988887
Q ss_pred H
Q 044412 302 M 302 (311)
Q Consensus 302 M 302 (311)
-
T Consensus 396 ~ 396 (409)
T TIGR00540 396 S 396 (409)
T ss_pred H
Confidence 4
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.66 E-value=1.5e-05 Score=72.19 Aligned_cols=232 Identities=10% Similarity=0.120 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCCC-------Ceeee----e-c---cccCCChhHHHHHHHHHHHCCCCchHHH
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEP-------NVFVY----H-A---FSSLRHPLQAIAFYLYMLRAEVLLTTVH 124 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~-------~~~~~----~-~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 124 (311)
.+...+...| ...|+++.|..++.+-.+. +.... + . |...+.+.+|..+|+++..- .
T Consensus 200 ~~~~~La~~y-~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------~ 271 (508)
T KOG1840|consen 200 RTLRNLAEMY-AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------R 271 (508)
T ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------H
Confidence 4555566777 7777777777777554321 11000 0 0 66777888888888877541 0
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC------CCHhH-HHHHHHHHHHH------------H
Q 044412 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE------RKFAT-WNTMIDAYARL------------A 185 (311)
Q Consensus 125 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~------~~~~~-~~~li~~~~~~------------a 185 (311)
+.....-.+.-..+++.|-.+|++.|++++|...+.+..+-... +.+.+ ++.+...++.. +
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 00000011112456777777899999999966654333332211 23332 23333333332 4
Q ss_pred HHHHhhCCCC-c---HhHHHHHHHHHHhCCChhHHHHHHHHHHhc----C--CCC-CHHHHHHHHHHHhccCChhhHHHH
Q 044412 186 ELLFNKMPAW-D---IRSWTTMITSYSQNKQFREALDAFNKTKKS----G--TGS-DQVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 186 ~~~~~~m~~~-~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~p-~~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
.+++.....+ + ..+|+.|-..|-..|++++|.+++++..+. + ..+ ....++-|-.+|.+.+..+.|.++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 4444433333 2 257999999999999999999999997652 1 223 356788889999999999999998
Q ss_pred HHhhCChHHHHHHHhhcCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 255 QIYCRSLGRSLLVFFKLREKNL-LCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
|.+++.+-.+. ....|++ .+|..|...|-+.|+++.|.++.+...
T Consensus 432 ~~~~~~i~~~~----g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 432 FEEAKDIMKLC----GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHh----CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 86544433111 1113443 689999999999999999999987765
No 35
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.66 E-value=4.4e-08 Score=54.51 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 230 (311)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999998
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.62 E-value=3.1e-05 Score=75.18 Aligned_cols=87 Identities=8% Similarity=0.021 Sum_probs=53.6
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec----cccCC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA----FSSLR 101 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~----~~~~~ 101 (311)
..+..++...++...+..+++..++.. +.++..+..+...+ .+.|+.++|...+++..+ |+...+.. +...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l-~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL-ADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCC
Confidence 455556666777777777777666542 22344555666666 777777777777776542 32222322 66677
Q ss_pred ChhHHHHHHHHHHHC
Q 044412 102 HPLQAIAFYLYMLRA 116 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~ 116 (311)
+.++|+..+++..+.
T Consensus 131 ~~~~Al~~l~~al~~ 145 (765)
T PRK10049 131 RHWDELRAMTQALPR 145 (765)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776653
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.61 E-value=1.3e-05 Score=75.90 Aligned_cols=268 Identities=12% Similarity=-0.020 Sum_probs=157.1
Q ss_pred HHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhH
Q 044412 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQ 105 (311)
Q Consensus 33 ~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~ 105 (311)
.+-..+++..+...|...++ +.|++..|..+-.+| .+.|+++.|.+.++...+ |+ ...|.. +...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~-~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACH-NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34455677778888877665 457788888888888 999999999998887654 32 222222 778888888
Q ss_pred HHHHHHHHHHCC-CCch---HHHHHHHH-----------hcCCCchhHHHH-----------------------------
Q 044412 106 AIAFYLYMLRAE-VLLT---TVHGQVWK-----------NGFSSPVFVQTA----------------------------- 141 (311)
Q Consensus 106 a~~~~~~m~~~~-~~p~---~~~~~~~~-----------~g~~~~~~~~~~----------------------------- 141 (311)
|+.-|......+ ..+. ........ ....++...+..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 887665443211 1110 00000000 000000000000
Q ss_pred -HHHHH------HhCCCCccchHHHHHHhccCC-CC-CHhHHHHHHHHHHHH-----HHHHHhhCC--CCc-HhHHHHHH
Q 044412 142 -MVDNY------SYSNKFFESRRVSRRLFDEMP-ER-KFATWNTMIDAYARL-----AELLFNKMP--AWD-IRSWTTMI 204 (311)
Q Consensus 142 -ll~~~------~~~g~~~~a~~~a~~~~~~~~-~~-~~~~~~~li~~~~~~-----a~~~~~~m~--~~~-~~~y~~li 204 (311)
++..+ ...+++++|.+.....++... .| ....|+.+-..+... |...|++.. .|+ ...|..+.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la 372 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 00000 112455663333333332211 12 223344443333332 555555443 233 44666677
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGR 263 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~ 263 (311)
..+...|++++|+..|++..+.. +-+...|..+-..+...|++++|...|+. .|+.++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 77777778888888777776542 22456677777777777777777777766 567777
Q ss_pred HHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 264 SLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 264 a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
|...|++.. .| +...|+.+-..+...|++++|...|++...
T Consensus 452 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 877777655 34 467889999999999999999999998765
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.60 E-value=1.2e-05 Score=79.14 Aligned_cols=215 Identities=9% Similarity=-0.059 Sum_probs=142.9
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCC--CCCeeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQ--EPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
+...|..+-.++ .. ++.++|...+.+.. .|+...... +...|++++|...|+.+...
T Consensus 476 ~~~a~~~LG~~l-~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------------- 538 (987)
T PRK09782 476 DAAAWNRLAKCY-RD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--------------- 538 (987)
T ss_pred CHHHHHHHHHHH-Hh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---------------
Confidence 456677777666 65 78888888666543 344222111 45789999999999987542
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHH---HHH--HHHHHhhCC--CCcHhHHHHHH
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY---ARL--AELLFNKMP--AWDIRSWTTMI 204 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~---~~~--a~~~~~~m~--~~~~~~y~~li 204 (311)
.|+...+..+..++.+.|++++|.....+..+.-+ .....+..+.... .+. |...+++.. .|+...|..+-
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA 616 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARA 616 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44445566667788899999995544444443221 1222222222222 111 666666554 46777888888
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSI 282 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~l 282 (311)
..+.+.|++++|+..|++..+. .|+ ...++.+-.++...|+.++|...++. |.+. .| +...+..+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~------AL~l-----~P~~~~a~~nL 683 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLER------AHKG-----LPDDPALIRQL 683 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH------HHHh-----CCCCHHHHHHH
Confidence 8999999999999999998774 455 44566666688888888866655422 2211 34 45678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 044412 283 TEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 283 i~~~~~~g~~~~a~~~~~~M~~ 304 (311)
-.++...|++++|...+++..+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.59 E-value=3.3e-05 Score=75.02 Aligned_cols=278 Identities=9% Similarity=-0.040 Sum_probs=173.5
Q ss_pred CCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec
Q 044412 19 PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA 96 (311)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~ 96 (311)
|..+.. ...+..++...++..++...++..++. .+.+.. +..+-.++ ...|+.++|...+++..+ |+......
T Consensus 80 P~~~~a--~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l-~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 80 PQNDDY--QRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVY-KRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555443 346666777788888888888887776 233444 77777777 888888888888888753 43222111
Q ss_pred -----cccCCChhHHHHHHHHHHHC-----CCC--c----------------------h---HHHHHHHHh-cCCCchh-
Q 044412 97 -----FSSLRHPLQAIAFYLYMLRA-----EVL--L----------------------T---TVHGQVWKN-GFSSPVF- 137 (311)
Q Consensus 97 -----~~~~~~~~~a~~~~~~m~~~-----~~~--p----------------------~---~~~~~~~~~-g~~~~~~- 137 (311)
+...+..++|++.++..... +.. | + ...+.+.+. .-.|+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 55667777777766643320 000 0 0 111122211 1223221
Q ss_pred HHH----HHHHHHHhCCCCccchHHHHHHhccCCCCC--HhHH--HHHHHHHHHH-----HHHHHhhCCC--Cc-----H
Q 044412 138 VQT----AMVDNYSYSNKFFESRRVSRRLFDEMPERK--FATW--NTMIDAYARL-----AELLFNKMPA--WD-----I 197 (311)
Q Consensus 138 ~~~----~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~--~~~~--~~li~~~~~~-----a~~~~~~m~~--~~-----~ 197 (311)
.+. ..+.++...|+.++ |...|+.+.+.+ ...+ ..+-..|... |...|++... |. .
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~e----A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKD----VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHH----HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 111 11334567788999 555555554421 1111 1123334333 7777776542 21 2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcC-----------CCCCH---HHHHHHHHHHhccCChhhHHHHHHh------
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSG-----------TGSDQ---VTMATVLSACAHLGALDLGRGIQIY------ 257 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~t~~~li~a~~~~~~~~~a~~~~~~------ 257 (311)
..+..+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|+.++|..+++.
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345666677888999999999999988642 12332 2455677788889999999999887
Q ss_pred ---------------hCChHHHHHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 258 ---------------CRSLGRSLLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 258 ---------------~~~~~~a~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.|+.+.|.+.+++.. .|+ ...+-.....+.+.|++++|..+++++.+.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 788889999888877 565 556677777888999999999999999863
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.55 E-value=0.00013 Score=70.64 Aligned_cols=288 Identities=10% Similarity=0.042 Sum_probs=189.8
Q ss_pred HHhhhhhcCCCCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC
Q 044412 9 IITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE 88 (311)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~ 88 (311)
.+..+.+...|....+........++...++.+.+.++++.+.+..-. ++..+..++..+ .+.++.++|.+.++.+.+
T Consensus 87 A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y-~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 87 VIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQ-ADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-hhcCCHHHHHHHHHHhcc
Confidence 344444444454444422233355667779999999999999887533 356667778888 999999999999999875
Q ss_pred --CCeeeeec----cccCCChhHHHHHHHHHHHCCCCch-----------------------------------------
Q 044412 89 --PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLT----------------------------------------- 121 (311)
Q Consensus 89 --~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~----------------------------------------- 121 (311)
|+...+.. +...++..+|++.++++.+.. |+
T Consensus 165 ~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 165 RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 44333322 333556656999999887753 44
Q ss_pred -H---------------------HHH-------HHH-HhcCCCch-hH----HHHHHHHHHhCCCCccchHHHHHHhccC
Q 044412 122 -T---------------------VHG-------QVW-KNGFSSPV-FV----QTAMVDNYSYSNKFFESRRVSRRLFDEM 166 (311)
Q Consensus 122 -~---------------------~~~-------~~~-~~g~~~~~-~~----~~~ll~~~~~~g~~~~a~~~a~~~~~~~ 166 (311)
. +.+ .+. ..+-.|.. .. .--.+-++...|+.++ +.+.++.+
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~----vi~~y~~l 318 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD----LIKEYEAM 318 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH----HHHHHHHh
Confidence 0 000 111 11111321 11 1234457788899999 77777777
Q ss_pred CCCC--Hh--HHHHHHHHHHHH-----HHHHHhhCCC---------CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC-
Q 044412 167 PERK--FA--TWNTMIDAYARL-----AELLFNKMPA---------WDIRSWTTMITSYSQNKQFREALDAFNKTKKSG- 227 (311)
Q Consensus 167 ~~~~--~~--~~~~li~~~~~~-----a~~~~~~m~~---------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g- 227 (311)
+.+. +. +--.+-++|... |..+|..... ++......|.-+|...+++++|..+++.+.+.-
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 7433 23 334566666654 8888887632 133445788899999999999999999998731
Q ss_pred ------------CCCCHH-HHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC-
Q 044412 228 ------------TGSDQV-TMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR- 272 (311)
Q Consensus 228 ------------~~p~~~-t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~- 272 (311)
--||-. -+..++..+.-.|++.+|++.++. -|.+..|++.++...
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 112222 344567778889999999999888 777888888886655
Q ss_pred -CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 273 -EK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 273 -~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.| +..+......++...|++.+|..+.+...+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34 456777778888888888888888777654
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.54 E-value=3.3e-05 Score=69.42 Aligned_cols=225 Identities=10% Similarity=0.001 Sum_probs=152.2
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchh--HHHHHHHHHhhccCChhHHHHhcccCCC--CCee-eeec----ccc
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCF--LAKQFISFCTSRFHFIDYTILVFPQMQE--PNVF-VYHA----FSS 99 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~-~~~~----~~~ 99 (311)
....+....|+.+.+...+....+.- |+.. .--.....+ ...|+.+.|...++.+.+ |+.. .... +..
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~-l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRIL-LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44555667788888888888876653 4443 333346677 889999999999999874 4332 2222 899
Q ss_pred CCChhHHHHHHHHHHHCCCCch--------HHHHHHH-----Hh---------cCCC-----chhHHHHHHHHHHhCCCC
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLT--------TVHGQVW-----KN---------GFSS-----PVFVQTAMVDNYSYSNKF 152 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~~-----~~---------g~~~-----~~~~~~~ll~~~~~~g~~ 152 (311)
.|++++|.+++..+.+.++.+. ....... +. .-.| +...+..+...+...|+.
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 9999999999999999876543 1111101 00 1133 778899999999999999
Q ss_pred ccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-------HHHHHhhCC--CCc-H--hHHHHHHHHHHhCCChhHHHHHH
Q 044412 153 FESRRVSRRLFDEMPERKFATWNTMIDAYARL-------AELLFNKMP--AWD-I--RSWTTMITSYSQNKQFREALDAF 220 (311)
Q Consensus 153 ~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-------a~~~~~~m~--~~~-~--~~y~~li~~~~~~g~~~~a~~~~ 220 (311)
++|..+..+.++.-+......+. ++..+... +.+.++.-. .|+ . ....++-..+.+.|++++|.+.|
T Consensus 280 ~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 280 DSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99666666666554443211111 23333321 333333222 233 3 45557778888999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 221 NKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 221 ~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+.-......||..++..+-..+.+.|+.++|.+++++
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9655545689999999999999999999988888754
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.50 E-value=7.4e-06 Score=66.84 Aligned_cols=185 Identities=9% Similarity=0.052 Sum_probs=134.1
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~ 100 (311)
..+...+...++...+...++...+.. +.+...+..+...+ ...|+++.|.+.+++..+ |+ ...+.. +...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYY-QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 345566667788888888888887654 33466778888888 999999999999987653 22 111211 7888
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
|++++|.+.|++..+... .......+..+-..+...|++++ |...+......+
T Consensus 113 g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~---------- 165 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDK----AEKYLTRALQID---------- 165 (234)
T ss_pred ccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhC----------
Confidence 999999999999865321 12234567778888999999999 555555422211
Q ss_pred HHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
..+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.+.|..+.
T Consensus 166 -------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 166 -------------PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred -------------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 124557778888899999999999999998876 3456677777888888888888776654
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.48 E-value=5.8e-06 Score=74.46 Aligned_cols=269 Identities=10% Similarity=0.111 Sum_probs=161.3
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCc-chhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec-----cc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANL-DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA-----FS 98 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-----~~ 98 (311)
+..+..++...|+++++..+++.+++.. | ....|-.+-.++ ...|+.+.|...|.+..+ |+.....+ +-
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al-~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAAL-VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHH-HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 4568889999999999999999888763 3 345677777778 888999988888877654 44444333 34
Q ss_pred cCCChhHHHHHHHHHHHCCCCch--------------------HHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLT--------------------TVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRR 157 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~--------------------~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~ 157 (311)
..|+.++|..-|.+-.+. .|. .++..-..-.+.|+ ...|-.|-+.|...+.+|+|..
T Consensus 196 a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 456666666666554331 122 11111111224555 3456666666777777777333
Q ss_pred HHHHHhccCCCCCH-hHHHHHHHHHHHH-----HHHHHhhCC--CCc-HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 158 VSRRLFDEMPERKF-ATWNTMIDAYARL-----AELLFNKMP--AWD-IRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 158 ~a~~~~~~~~~~~~-~~~~~li~~~~~~-----a~~~~~~m~--~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
...+.+.. .|+. +.+..|-..|-.. |...+++-. +|+ ...||.|-.++-..|++.+|.+.+..-.. +
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--L 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--h
Confidence 22222221 1221 2222221111111 555555443 344 34688888888888888888888887665 3
Q ss_pred CCC-HHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC--CCCc-hhHHHHH
Q 044412 229 GSD-QVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR--EKNL-LCWNSIT 283 (311)
Q Consensus 229 ~p~-~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~--~p~~-~~~~~li 283 (311)
-|+ ....+.|-..+...|.++.|..++.. .|++++|...+++.. +|+. ..|+.|-
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 444 35677777888888888888777765 566666666655544 4543 3566666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 044412 284 EALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|-..|+...|...+.+.+.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666666655443
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.48 E-value=1.7e-05 Score=70.93 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=148.4
Q ss_pred hhccChhhHHHHHHHHHHhccCcchhHHH--HHHHHHhhccCChhHHHHhcccCCC--CCeee-eec----cccCCChhH
Q 044412 35 KKCSSIKELECVYATIVKTNANLDCFLAK--QFISFCTSRFHFIDYTILVFPQMQE--PNVFV-YHA----FSSLRHPLQ 105 (311)
Q Consensus 35 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~-~~~----~~~~~~~~~ 105 (311)
...|+.+.+...+..+.+. .|+..... .....+ ...|+.+.|...+++..+ |+... ... +.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~-l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQ-LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 6778888888888888764 55654433 334577 889999999999999875 33221 111 889999999
Q ss_pred HHHHHHHHHHCCCCchH--------HHHHHHH-------------------hcCCCchhHHHHHHHHHHhCCCCccchHH
Q 044412 106 AIAFYLYMLRAEVLLTT--------VHGQVWK-------------------NGFSSPVFVQTAMVDNYSYSNKFFESRRV 158 (311)
Q Consensus 106 a~~~~~~m~~~~~~p~~--------~~~~~~~-------------------~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 158 (311)
|.+++..+.+.+..++. .+..+.. ...+.++.....+...+...|+.++|..+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999988775441 1101010 01234677788889999999999996666
Q ss_pred HHHHhccCCCCCHhHHHHHHHHHHHH-------HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 159 SRRLFDEMPERKFATWNTMIDAYARL-------AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 159 a~~~~~~~~~~~~~~~~~li~~~~~~-------a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
..+.++. .++. .++..|... +.+..+... .| |...+..+-..+.+.+++++|.+.|+...+ .
T Consensus 286 L~~~l~~--~~~~----~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~ 357 (398)
T PRK10747 286 ILDGLKR--QYDE----RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--Q 357 (398)
T ss_pred HHHHHhc--CCCH----HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 6666653 2222 222222221 333333332 23 555677888889999999999999999987 4
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 229 GSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 229 ~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
.|+..+|..+-.++.+.|+.++|.+++++
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 79999999999999999999988777643
No 45
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.45 E-value=2.3e-07 Score=50.31 Aligned_cols=31 Identities=29% Similarity=0.676 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 46
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.43 E-value=2.4e-05 Score=70.65 Aligned_cols=212 Identities=10% Similarity=0.115 Sum_probs=137.5
Q ss_pred HHHHHHHHHhhccCChhHHHHhcccCC--CCC-eee-eec---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCC
Q 044412 61 LAKQFISFCTSRFHFIDYTILVFPQMQ--EPN-VFV-YHA---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133 (311)
Q Consensus 61 ~~~~ll~~~~~~~g~~~~a~~~~~~m~--~~~-~~~-~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~ 133 (311)
.|-.|=..| ...+.++.|...+.... .|+ .+. .|. |...|+.+-|++.|++-.+ ++
T Consensus 254 AYiNLGnV~-ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~----------------~~ 316 (966)
T KOG4626|consen 254 AYINLGNVY-KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE----------------LQ 316 (966)
T ss_pred HHhhHHHHH-HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh----------------cC
Confidence 455555666 66777777777765542 333 222 333 8889999999999988765 46
Q ss_pred Cc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--CC-HhHHHHHHHHHHHH-----HHHHHhhCCC--Cc-HhHHH
Q 044412 134 SP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RK-FATWNTMIDAYARL-----AELLFNKMPA--WD-IRSWT 201 (311)
Q Consensus 134 ~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~-----a~~~~~~m~~--~~-~~~y~ 201 (311)
|+ ...|+.|-+++-..|++++ |...++.... |+ ..+.+.|-..|... |.++|..-.+ |. ...+|
T Consensus 317 P~F~~Ay~NlanALkd~G~V~e----a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTE----AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred CCchHHHhHHHHHHHhccchHH----HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 66 6789999999999999999 7777665443 22 23455555555554 5555543332 32 34578
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCCc-h
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQ-VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKNL-L 277 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~~-~ 277 (311)
.|-..|-..|++++|+..+++-.+ +.|+- ..|+.+=..|-..|+++.|.+.+ .+-. .|.. .
T Consensus 393 NLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y-------------~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCY-------------TRAIQINPTFAE 457 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHH-------------HHHHhcCcHHHH
Confidence 888888888888888888888765 67763 35555555555555555554444 3332 2332 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 278 CWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 278 ~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
.++.|-..|-..|++.+|..-|++-.+ ++||
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 567777777777777777777776553 4555
No 47
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.42 E-value=3.5e-07 Score=49.59 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
.|||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999986
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00012 Score=64.03 Aligned_cols=201 Identities=15% Similarity=0.219 Sum_probs=143.3
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCC------eeeee----------------
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN------VFVYH---------------- 95 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~------~~~~~---------------- 95 (311)
....+..+=.......|++-+...-+..-.+. -...+++.|..+|+++.+.| ..+|+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~-y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAAS-YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 34444445555666778877777666666666 77889999999999886422 11111
Q ss_pred ---------------c----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccc
Q 044412 96 ---------------A----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFES 155 (311)
Q Consensus 96 ---------------~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a 155 (311)
+ |+-.++.++|...|+.-.+ +.|. ...|+.+-+-|....+...|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk----------------LNp~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK----------------LNPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh----------------cCcchhHHHHHhhHHHHHhcccHHH
Confidence 1 5555677778887777654 4454 55677777779999998884
Q ss_pred hHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 044412 156 RRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG 227 (311)
Q Consensus 156 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 227 (311)
.+-.+...+ +.+.|-..|-.|=.+|.-. |.-.|++-. .-|...|.+|-++|-+.+++++|++.|..-...|
T Consensus 384 i~sYRrAvd-i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 384 IESYRRAVD-INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHh-cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 443333322 3446777787777777765 666666543 3489999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 228 TGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 228 ~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
=. +...+..|-+.|-+.++.++|.+.+..
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33 667899999999999999999888866
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.28 E-value=5e-05 Score=74.81 Aligned_cols=207 Identities=4% Similarity=-0.086 Sum_probs=134.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeee-c---cccCC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYH-A---FSSLR 101 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~-~---~~~~~ 101 (311)
..+..++.. ++..++...+......- |+......+...+ .+.|++++|...|+++.. |+...+. . +.+.|
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al-~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G 556 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQA-YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHH-HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence 444555554 67777766555555443 5544433334444 688999999999987643 2222221 1 67889
Q ss_pred ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHH
Q 044412 102 HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~ 181 (311)
+.++|.+.|++..+.. +.+...+..+.....+.|++++|.....+..+.- |+...|..+-..+
T Consensus 557 d~~eA~~~l~qAL~l~---------------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l 619 (987)
T PRK09782 557 NGAARDRWLQQAEQRG---------------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIY 619 (987)
T ss_pred CHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 9999999998886532 2223333333344455688888443333333322 4555666665555
Q ss_pred HHH-----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHH
Q 044412 182 ARL-----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGR 252 (311)
Q Consensus 182 ~~~-----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~ 252 (311)
.+. |...|++.. .| +...++.+-..+...|+.++|+..|++..+. .| +...+..+-.++...|+++.|+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 554 667676554 34 5667888888999999999999999998874 45 4567888889999999999777
Q ss_pred HHHHh
Q 044412 253 GIQIY 257 (311)
Q Consensus 253 ~~~~~ 257 (311)
..++.
T Consensus 698 ~~l~~ 702 (987)
T PRK09782 698 HYARL 702 (987)
T ss_pred HHHHH
Confidence 66654
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.8e-05 Score=71.76 Aligned_cols=222 Identities=13% Similarity=0.065 Sum_probs=153.0
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCC------CCeeeeec-cccCCChhHHHHHH-HHHHHCCCCchHHHHHHHHhc
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQE------PNVFVYHA-FSSLRHPLQAIAFY-LYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~-~~~~~~~~~a~~~~-~~m~~~~~~p~~~~~~~~~~g 131 (311)
-+...+=.+| ...++.++|.++|+..++ .+...|.+ +-+..+ +-++..+ +++.+.
T Consensus 354 wvl~q~Gray-FEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-~v~Ls~Laq~Li~~--------------- 416 (638)
T KOG1126|consen 354 WVLSQLGRAY-FELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-EVALSYLAQDLIDT--------------- 416 (638)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-hHHHHHHHHHHHhh---------------
Confidence 4555666777 778888888888877753 22223333 111111 1111111 111111
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH-hHHHHHHHHHHHH-------HHHHHhhCCCCcHhHHHHH
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF-ATWNTMIDAYARL-------AELLFNKMPAWDIRSWTTM 203 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~-~~~~~li~~~~~~-------a~~~~~~m~~~~~~~y~~l 203 (311)
-+-.+.+|-++-++|+-.++.+. |.+.|++..+.|. ++|..-+-++-.. |..-|..-...|...||++
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~----Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDT----AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHH----HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 24457899999999999999999 9999998877655 4554444444333 6666666666677766664
Q ss_pred ---HHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHh---------------------h
Q 044412 204 ---ITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIY---------------------C 258 (311)
Q Consensus 204 ---i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~ 258 (311)
-..|.+.++++.|+-.|+.-.+ +-|. .+....+-..+-+.|+.++|.++++. .
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 4668889999999999998776 4453 44455555666788999999999998 8
Q ss_pred CChHHHHHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 259 RSLGRSLLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 259 ~~~~~a~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
++.++|.+.+++++ -|+ ...|-.+-..|-+.|+.+.|+.-|.-+.+
T Consensus 571 ~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 88999999999888 454 56788888899999999999887777654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.26 E-value=0.00047 Score=59.25 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=160.4
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCC-Ceeeeec-------cccCCChhHHHHH
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP-NVFVYHA-------FSSLRHPLQAIAF 109 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-------~~~~~~~~~a~~~ 109 (311)
|+++.++.+...-.++|-.|- ..|-.-..+. .+.|+.+.+..++.+.-++ +..+... ....|+...|..-
T Consensus 98 G~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchH-HHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 555555555555444443321 1222233444 6677888888877776543 2222111 6667777777777
Q ss_pred HHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC-----------HhHHHHHH
Q 044412 110 YLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK-----------FATWNTMI 178 (311)
Q Consensus 110 ~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~-----------~~~~~~li 178 (311)
..++.+.+ +-++.+......+|.+.|++.. ...+...+.+.+ .-+|+.++
T Consensus 176 v~~ll~~~---------------pr~~~vlrLa~r~y~~~g~~~~----ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 176 VDQLLEMT---------------PRHPEVLRLALRAYIRLGAWQA----LLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHhC---------------cCChHHHHHHHHHHHHhccHHH----HHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 77776543 4567788999999999999999 555555544322 13666666
Q ss_pred HHHHHH--HHH---HHhhCCC---CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 179 DAYARL--AEL---LFNKMPA---WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 179 ~~~~~~--a~~---~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
.-.... +.. -+++.+. .++..-.+++.-+...|+.++|.++..+-.+++..|...+ +-.+.+.++.+.
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~ 312 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEP 312 (400)
T ss_pred HHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchH
Confidence 655544 333 4444442 2455666788889999999999999999888877665222 223445555544
Q ss_pred HHHHHHh---------------------hCChHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 251 GRGIQIY---------------------CRSLGRSLLVFFKLR--EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 251 a~~~~~~---------------------~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
-.+..+. .+...+|...|+.-. +|+..+|+.+-+++.+.|+..+|...+++-...-.
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 4444443 455556666666443 79999999999999999999999999998765555
Q ss_pred CCC
Q 044412 308 RPN 310 (311)
Q Consensus 308 ~P~ 310 (311)
+|+
T Consensus 393 ~~~ 395 (400)
T COG3071 393 QPN 395 (400)
T ss_pred CCC
Confidence 554
No 52
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=9.8e-05 Score=72.29 Aligned_cols=176 Identities=12% Similarity=0.102 Sum_probs=145.3
Q ss_pred CCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCC------CH-hHHHHHHHHHHHH--HHHHHhhCCC--CcHhHH
Q 044412 133 SSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER------KF-ATWNTMIDAYARL--AELLFNKMPA--WDIRSW 200 (311)
Q Consensus 133 ~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~------~~-~~~~~li~~~~~~--a~~~~~~m~~--~~~~~y 200 (311)
.|| ...|-..|......++.++|+.+|++.+..+-.+ ++ .+|-.+-.+|... ..++|++..+ .-...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 454 6789999999999999999999999988887322 22 3555566677633 8888888764 235679
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh-----------------------
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------- 257 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~----------------------- 257 (311)
..|..-|.+.+..++|-++|+.|.+. +.-....|...+..+.+..+-+.|+.++..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999999875 335667899999999999998999888887
Q ss_pred hCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044412 258 CRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 258 ~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P 309 (311)
+|+.+++..+|+... .| -...|+..|+.=.++|+.+.+.++|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999887 22 45689999999999999999999999999988876
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=0.00016 Score=60.49 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=115.8
Q ss_pred cCChhHHHHhcccCCCCCeeeeec-------cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCch------hHH
Q 044412 73 FHFIDYTILVFPQMQEPNVFVYHA-------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV------FVQ 139 (311)
Q Consensus 73 ~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~------~~~ 139 (311)
..+.++|.++|-+|.+-|..|+.. |-+.|..+.|+++-+.+.++ ||. ...
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-----------------pdlT~~qr~lAl 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-----------------PDLTFEQRLLAL 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----------------CCCchHHHHHHH
Confidence 457788888888888777777765 77778888888888776542 332 122
Q ss_pred HHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHH
Q 044412 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA 219 (311)
Q Consensus 140 ~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~ 219 (311)
.-|-.-|-..|-+|. |+.+|....+.+.+. ...-.-|+.-|-...++++|+++
T Consensus 111 ~qL~~Dym~aGl~DR----AE~~f~~L~de~efa-----------------------~~AlqqLl~IYQ~treW~KAId~ 163 (389)
T COG2956 111 QQLGRDYMAAGLLDR----AEDIFNQLVDEGEFA-----------------------EGALQQLLNIYQATREWEKAIDV 163 (389)
T ss_pred HHHHHHHHHhhhhhH----HHHHHHHHhcchhhh-----------------------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 334455777788888 777776655532211 12233445555555555555555
Q ss_pred HHHHHhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcCCC
Q 044412 220 FNKTKKSGTGSDQ----VTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLREK 274 (311)
Q Consensus 220 ~~~m~~~g~~p~~----~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~~p 274 (311)
-+++.+.|-.+.. .-|.-|-..+.-..+++.|..++.. .|+...|.+.++...+-
T Consensus 164 A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 164 AERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred HHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 5555554433322 1233344444444555555555544 45555666666666633
Q ss_pred Cc----hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 275 NL----LCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 275 ~~----~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
|+ .+-..|..+|...|+.++....+.++.+.
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 32 46788999999999999999888887654
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=4.9e-05 Score=69.03 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCC------CCHhHHHHHHHHHHHH------HHHHHhhCCCCcHhHHHHHH
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE------RKFATWNTMIDAYARL------AELLFNKMPAWDIRSWTTMI 204 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~------~~~~~~~~li~~~~~~------a~~~~~~m~~~~~~~y~~li 204 (311)
.+..-+-.+|...++.++ ++++|+...+ .++..|.+.+=.+-+. |.++.+..+. ...+|.++-
T Consensus 354 wvl~q~GrayFEl~~Y~~----a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~-sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQ----AERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPN-SPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCC-CcHHHHHhc
Confidence 555566778999999999 8888876644 3566777776655543 5555555542 456788888
Q ss_pred HHHHhCCChhHHHHHHHHHHhc------------------------------CCCCCHHHHHHHH---HHHhccCChhhH
Q 044412 205 TSYSQNKQFREALDAFNKTKKS------------------------------GTGSDQVTMATVL---SACAHLGALDLG 251 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~------------------------------g~~p~~~t~~~li---~a~~~~~~~~~a 251 (311)
.+|.-.++.+.|++.|++-.+- .+.+|+..||+.. -.|.+.++++.|
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 8888888888888887776542 1344555555432 335566666666
Q ss_pred HHHHHh---------------------hCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 252 RGIQIY---------------------CRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 252 ~~~~~~---------------------~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
+..|+. +|+.+.|.++|++-. ..|+..---....+...++.++|+..++++++ +
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~ 586 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--L 586 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--h
Confidence 666666 777778888877654 33454444455666677888888888888875 4
Q ss_pred CCC
Q 044412 308 RPN 310 (311)
Q Consensus 308 ~P~ 310 (311)
.|+
T Consensus 587 vP~ 589 (638)
T KOG1126|consen 587 VPQ 589 (638)
T ss_pred Ccc
Confidence 554
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00013 Score=61.14 Aligned_cols=187 Identities=12% Similarity=0.012 Sum_probs=143.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--CCHhHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATW 174 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~ 174 (311)
|.+-|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+...... |..++.++.+ |.-+||
T Consensus 233 ylrLgm~r~AekqlqssL~q----------------~~~~dTfllLskvY~ridQP~~----AL~~~~~gld~fP~~VT~ 292 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ----------------FPHPDTFLLLSKVYQRIDQPER----ALLVIGEGLDSFPFDVTY 292 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc----------------CCchhHHHHHHHHHHHhccHHH----HHHHHhhhhhcCCchhhh
Confidence 78889999999999887653 5777788889999999999999 8888887765 555554
Q ss_pred HHHHH----HHHHH--HHHHHhhCCC---CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 044412 175 NTMID----AYARL--AELLFNKMPA---WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 175 ~~li~----~~~~~--a~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 245 (311)
-+=+. +.... +.++++...+ -|+.....+-.+|...++++-|+++++++.+.|+. ++..|+.+--+|.-.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 32111 11111 7777766543 36667777778888999999999999999999976 556666666667777
Q ss_pred CChhhHHHHHHh------------------------hCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHH
Q 044412 246 GALDLGRGIQIY------------------------CRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGM 298 (311)
Q Consensus 246 ~~~~~a~~~~~~------------------------~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~ 298 (311)
++++.+..-|.. .|+...|.+.|+--. .| +...+|.|----.+.|++++|..+
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 888877777766 788888888888665 23 357899998888999999999999
Q ss_pred HHHHHH
Q 044412 299 FDRMTY 304 (311)
Q Consensus 299 ~~~M~~ 304 (311)
+.....
T Consensus 452 l~~A~s 457 (478)
T KOG1129|consen 452 LNAAKS 457 (478)
T ss_pred HHHhhh
Confidence 987664
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=98.04 E-value=0.00022 Score=66.70 Aligned_cols=185 Identities=8% Similarity=-0.108 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhccCcch-hHHHHHHHHHh--h------ccCChhHHHHhcccCCC--CC-eeeeec----cccCCChh
Q 044412 41 KELECVYATIVKTNANLDC-FLAKQFISFCT--S------RFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPL 104 (311)
Q Consensus 41 ~~~~~l~~~m~~~g~~p~~-~~~~~ll~~~~--~------~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~ 104 (311)
..+..+++..++. .|+- ..|..+-.++. . ..++.++|...+++..+ |+ ...+.. +...|+++
T Consensus 278 ~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 3445666665544 4543 33433333330 1 23447888888887653 33 223322 67788999
Q ss_pred HHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 105 QAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 105 ~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
+|+..|++..+. .|+ ...+..+-..|...|++++|....++..+.-+... ..+..+...+..
T Consensus 356 ~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~~~~~~~~ 418 (553)
T PRK12370 356 VGSLLFKQANLL----------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHh
Confidence 999999988663 454 56777788889999999994444444333322211 111111111111
Q ss_pred H-----HHHHHhhCC---CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccC
Q 044412 184 L-----AELLFNKMP---AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT-MATVLSACAHLG 246 (311)
Q Consensus 184 ~-----a~~~~~~m~---~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~a~~~~~ 246 (311)
. |...+++.. .| +...+..+-..+...|+.++|...+.++... .|+..+ .+.+...++..|
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 1 555554432 23 3334555666667777777777777776443 444333 333444455555
No 57
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.99 E-value=0.00017 Score=61.38 Aligned_cols=189 Identities=7% Similarity=-0.001 Sum_probs=107.6
Q ss_pred CcchhHHHHHHHHHhhccCChhHHHHhccc-CCCCCe---eeeec-----cccCCChhHHHHHHHHHHHCCCCchHHHHH
Q 044412 56 NLDCFLAKQFISFCTSRFHFIDYTILVFPQ-MQEPNV---FVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126 (311)
Q Consensus 56 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~-m~~~~~---~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (311)
.|.......+...+ ....+-+.+..-+++ +.++.. .++.. +...|++++|++++..-
T Consensus 63 ~~~l~av~~la~y~-~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------- 128 (290)
T PF04733_consen 63 SPELQAVRLLAEYL-SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------- 128 (290)
T ss_dssp SCCCHHHHHHHHHH-CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------
T ss_pred ChhHHHHHHHHHHH-hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------
Confidence 66666666665555 443444444443332 222211 11111 66677777777766432
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHh---HHHHH
Q 044412 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIR---SWTTM 203 (311)
Q Consensus 127 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~---~y~~l 203 (311)
.+.......+..|.+.+++|. |.+.++.|.+-+ .|.. ...+.
T Consensus 129 -------~~lE~~al~Vqi~L~~~R~dl----A~k~l~~~~~~~------------------------eD~~l~qLa~aw 173 (290)
T PF04733_consen 129 -------GSLELLALAVQILLKMNRPDL----AEKELKNMQQID------------------------EDSILTQLAEAW 173 (290)
T ss_dssp -------TCHHHHHHHHHHHHHTT-HHH----HHHHHHHHHCCS------------------------CCHHHHHHHHHH
T ss_pred -------CcccHHHHHHHHHHHcCCHHH----HHHHHHHHHhcC------------------------CcHHHHHHHHHH
Confidence 233444556777778888887 666666654422 1222 23333
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSIT 283 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li 283 (311)
+..+.....+++|+.+|+++.+. ..++..+.+.+.-++...|++++|+.++...-..+ ..|..+.-.+|
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~----------~~~~d~LaNli 242 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD----------PNDPDTLANLI 242 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----------CCHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----------cCCHHHHHHHH
Confidence 44443345789999999997654 67888888888888889888887776654321111 23445666677
Q ss_pred HHHHhcCCh-HHHHHHHHHHHH
Q 044412 284 EALAIHGFA-HEALGMFDRMTY 304 (311)
Q Consensus 284 ~~~~~~g~~-~~a~~~~~~M~~ 304 (311)
-.....|+. +.+.+++.+++.
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCChhHHHHHHHHHHH
Confidence 777777776 667778887775
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.92 E-value=0.0039 Score=57.28 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCch
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLL 277 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~ 277 (311)
++..+-..|-..|++++|++++++-.++ .|+ +..|..--..+-+.|++++|....+....++.+ |..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~----------DRy 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA----------DRY 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh----------hHH
Confidence 3455677788899999999999998875 576 567888888899999999998888777777765 445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 278 CWNSITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 278 ~~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
.=+--...+.++|++++|.+++......+.
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 556667888899999999999888766554
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.90 E-value=0.00074 Score=57.93 Aligned_cols=182 Identities=11% Similarity=-0.037 Sum_probs=98.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--C-CHhH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--R-KFAT 173 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~-~~~~ 173 (311)
+.+.|+.++|...|++..+.. +.+...|+.+-..|...|++++ |...|+...+ | +...
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR---------------PDMADAYNYLGIYLTQAGNFDA----AYEAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCHHH
Confidence 567788888888888876531 3347888999999999999999 6655555432 2 2334
Q ss_pred HHHHHHHHHHH-----HHHHHhhCC--CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 044412 174 WNTMIDAYARL-----AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 174 ~~~li~~~~~~-----a~~~~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~ 246 (311)
|..+-..+... |.+.|+... .|+..............+++++|...|.+.... ..|+...+ .+.. ...|
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~--~~lg 210 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVE--FYLG 210 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHHH--HHcc
Confidence 44443333322 544444432 232221111111223346677777777654432 22332221 2222 1233
Q ss_pred ChhhHHHHHHh-hCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 247 ALDLGRGIQIY-CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 247 ~~~~a~~~~~~-~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
+...+. .+.. ....+.+.++ .......|..+-..+...|++++|...|++..+.+
T Consensus 211 ~~~~~~-~~~~~~~~~~~~~~l----~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 211 KISEET-LMERLKAGATDNTEL----AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCCHHH-HHHHHHhcCCCcHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333221 1111 0000000000 01234579999999999999999999999987644
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0021 Score=56.43 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=108.9
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC---CCCHhH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP---ERKFAT 173 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~---~~~~~~ 173 (311)
..-+|++++|.+.|++-..... .-....||.= -.+-+.|++++ |..+|-... ..+...
T Consensus 500 ~f~ngd~dka~~~ykeal~nda--------------sc~ealfnig-lt~e~~~~lde----ald~f~klh~il~nn~ev 560 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDA--------------SCTEALFNIG-LTAEALGNLDE----ALDCFLKLHAILLNNAEV 560 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCch--------------HHHHHHHHhc-ccHHHhcCHHH----HHHHHHHHHHHHHhhHHH
Confidence 4567899999999998754321 1112223321 24677889999 666554322 122222
Q ss_pred HHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 044412 174 WNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 174 ~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 245 (311)
..-+-+-|-.. |.+++-+.. ..|....+-|-+.|-+.|+-..|+..+-+--+ -++-+..|...|-..|...
T Consensus 561 l~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhh
Confidence 22222222221 444444332 23566677777778888888888776555322 2455677777777777776
Q ss_pred CChhhHHHHHHhhCChHHHHHHHhhcC--CCCchhHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 044412 246 GALDLGRGIQIYCRSLGRSLLVFFKLR--EKNLLCWNSITEALA-IHGFAHEALGMFDRMTY 304 (311)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~-~~g~~~~a~~~~~~M~~ 304 (311)
.-++ .+...|++-. .|+..-|..||.+|. +.|++.+|+++|++.-.
T Consensus 640 qf~e-------------kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 640 QFSE-------------KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHH-------------HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666 4555665544 899999999998887 67999999999998754
No 61
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.86 E-value=0.00027 Score=60.16 Aligned_cols=143 Identities=12% Similarity=0.129 Sum_probs=93.8
Q ss_pred HHHhhccCChhHHHHhcccCCCCCeeeeec--cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchh---HHHH
Q 044412 67 SFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF---VQTA 141 (311)
Q Consensus 67 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~---~~~~ 141 (311)
..+ ...|++++|+++++.-.........+ +.+.++++.|.+.++.|.+ +..|.. ...+
T Consensus 110 ~i~-~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----------------~~eD~~l~qLa~a 172 (290)
T PF04733_consen 110 TIL-FHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQ----------------IDEDSILTQLAEA 172 (290)
T ss_dssp HHH-CCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----------------CSCCHHHHHHHHH
T ss_pred HHH-HHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCcHHHHHHHHH
Confidence 445 77899999999998763322222222 8899999999999999975 334433 2333
Q ss_pred HHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHH
Q 044412 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFN 221 (311)
Q Consensus 142 ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~ 221 (311)
.++.+.-...+.+ |..+|+++.+.. .+++.+.|.+..+....|++++|.+++.
T Consensus 173 wv~l~~g~e~~~~----A~y~f~El~~~~-----------------------~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 173 WVNLATGGEKYQD----AFYIFEELSDKF-----------------------GSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHTTTCCCH----HHHHHHHHHCCS-------------------------SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHhCchhHHH----HHHHHHHHHhcc-----------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3433333446888 777777654321 2467788889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhccCCh-hhHHHH
Q 044412 222 KTKKSGTGSDQVTMATVLSACAHLGAL-DLGRGI 254 (311)
Q Consensus 222 ~m~~~g~~p~~~t~~~li~a~~~~~~~-~~a~~~ 254 (311)
+-.... +-|..|...++-+....|+. +.+.+.
T Consensus 226 ~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 226 EALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp HHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 976543 33566777777777777766 433333
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.83 E-value=0.0035 Score=54.04 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=137.8
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC---CCeeeeec----cccCCChhHHHHHH
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE---PNVFVYHA----FSSLRHPLQAIAFY 110 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~----~~~~~~~~~a~~~~ 110 (311)
|+...+........+.--.++....-+..... ...|+.+.|..-+++..+ .+...... |.+.|++.+...++
T Consensus 132 gd~~~an~yL~eaae~~~~~~l~v~ltrarll-l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 132 GDEDRANRYLAEAAELAGDDTLAVELTRARLL-LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred ccHHHHHHHHHHHhccCCCchHHHHHHHHHHH-HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444445555554443334445555555666 777888888777766543 22222333 88888889999999
Q ss_pred HHHHHCCCCch------------HHHHHHHHh---------------cCCCchhHHHHHHHHHHhCCCCccchHHHHHHh
Q 044412 111 LYMLRAEVLLT------------TVHGQVWKN---------------GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163 (311)
Q Consensus 111 ~~m~~~~~~p~------------~~~~~~~~~---------------g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~ 163 (311)
..|.+.|+--+ .+.++.... ..+-++..-.+++.-+.++|+.++|.++.++.+
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 88888887544 111111111 124456667788889999999999766666666
Q ss_pred ccCCCCCHhHHHHHHHHHH-----HHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 164 DEMPERKFATWNTMIDAYA-----RLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 164 ~~~~~~~~~~~~~li~~~~-----~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
+..-++....+-.-+..-. +.++.-....++ +.-.+.+|=..|.+.+.+.+|...|+.-.+ ..|+..+|+-+
T Consensus 291 k~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~l 367 (400)
T COG3071 291 KRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAEL 367 (400)
T ss_pred HhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHH
Confidence 6655554221111000000 003333333332 346677888889999999999999996554 68999999999
Q ss_pred HHHHhccCChhhHHHHHH
Q 044412 239 LSACAHLGALDLGRGIQI 256 (311)
Q Consensus 239 i~a~~~~~~~~~a~~~~~ 256 (311)
-.++...|+.++|.++.+
T Consensus 368 a~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 368 ADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHcCChHHHHHHHH
Confidence 999999999998887764
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.79 E-value=0.0099 Score=56.38 Aligned_cols=228 Identities=10% Similarity=0.095 Sum_probs=138.7
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~ 99 (311)
+.++..++...|+.......+ .+..+--+-|...|-.+-+.. .+.|+++.|.-.|.+..+-+..-|.. |-+
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~-llAAHL~p~d~e~W~~ladls-~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFW-LLAAHLNPKDYELWKRLADLS-EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHH-HHHHhcCCCChHHHHHHHHHH-HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 567777777777655554433 223334445667777777777 77888888888887765433222333 777
Q ss_pred CCChhHHHHHHHHHHHCCCCch---------------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCC
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLT---------------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~---------------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 152 (311)
.|+...|++-|.++.+..- |. .+.+.+...+-..+...++.+...|.+...+
T Consensus 254 ~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~ 332 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS 332 (895)
T ss_pred hChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence 8999999999999876532 22 1112222223344556677777777777777
Q ss_pred ccchHHHHHHhccCCCC----------------------CHhHHHHHH-HH---HHHH-----HHHHHhhCC------CC
Q 044412 153 FESRRVSRRLFDEMPER----------------------KFATWNTMI-DA---YARL-----AELLFNKMP------AW 195 (311)
Q Consensus 153 ~~a~~~a~~~~~~~~~~----------------------~~~~~~~li-~~---~~~~-----a~~~~~~m~------~~ 195 (311)
+.|.......-+.-.++ +..+|..=+ +- +.+. ..-+..... +.
T Consensus 333 d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d 412 (895)
T KOG2076|consen 333 DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD 412 (895)
T ss_pred HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh
Confidence 77554433333311111 111222211 11 1111 222222221 23
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
++..|.-+.++|...|++.+|+++|..+...-.--+...|-.+-.+|-..|..++|...++.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 56678899999999999999999999998764444567888888888888888877766655
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=97.72 E-value=0.002 Score=60.31 Aligned_cols=211 Identities=9% Similarity=-0.023 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHhhc-----cCChhHHHHhcccCCC--CCeee-eec-------------cccCCChhHHHHHHHHHHHC
Q 044412 58 DCFLAKQFISFCTSR-----FHFIDYTILVFPQMQE--PNVFV-YHA-------------FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~-----~g~~~~a~~~~~~m~~--~~~~~-~~~-------------~~~~~~~~~a~~~~~~m~~~ 116 (311)
+...|...+.+- .. .++.+.|..+|++..+ |+... |.. +...++.++|...+++..+.
T Consensus 255 ~~da~~~~lrg~-~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGK-HELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhH-HHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 445555555553 21 2346788888888754 43321 111 11345678999999887663
Q ss_pred CCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--CC-HhHHHHHHHHHHHH-----HHHH
Q 044412 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RK-FATWNTMIDAYARL-----AELL 188 (311)
Q Consensus 117 ~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~-----a~~~ 188 (311)
. +-+...+..+-..+...|++++ |...+++..+ |+ ...|..+-..+... |...
T Consensus 334 d---------------P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 334 D---------------HNNPQALGLLGLINTIHSEYIV----GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred C---------------CCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 3356777777778899999999 6666655432 32 23444444444433 6666
Q ss_pred HhhCC--CCcH-hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhCChHHH
Q 044412 189 FNKMP--AWDI-RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264 (311)
Q Consensus 189 ~~~m~--~~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a 264 (311)
+++.. .|+. ..+..+...+...|++++|+..+++..+.. .|+ ...+..+-.++...|+.+ +|
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~-------------eA 460 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHE-------------LA 460 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHH-------------HH
Confidence 65543 2332 223333444555677777877777766542 343 333455555566666666 44
Q ss_pred HHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 265 LLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 265 ~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
...+.++. .|+ ....+.+-..|+..| ++|...++++.+
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 461 RKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 44444433 233 233445555566666 366666666543
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.025 Score=54.31 Aligned_cols=178 Identities=13% Similarity=0.082 Sum_probs=101.1
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCc--chhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec------cc
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANL--DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA------FS 98 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~------~~ 98 (311)
.+..-+-..++.+.+..+...+...-..- -...|-.+-++| ...|+++.|...|.+-.+ ++.+.+.. +.
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~-Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY-HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 44555556677777777777776654211 123466778888 999999999999977653 44444444 89
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC---Hh--
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK---FA-- 172 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~---~~-- 172 (311)
+.|+.+.+...|+..... .|| ..+...|-..|...+.-......|..+.....++. .-
T Consensus 354 ~~~dle~s~~~fEkv~k~----------------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ----------------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred HhchHHHHHHHHHHHHHh----------------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 999999999999988764 344 44444443445544422122222555554444322 11
Q ss_pred -----------HHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044412 173 -----------TWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 173 -----------~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 224 (311)
+|.+ +.+|.++...+...+.......-|.+-......|.+++|...|..-.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 3333 44444432233333333444555555555555566666666555544
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.70 E-value=0.0017 Score=59.15 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=133.1
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHh-----c-cCcc-hhHHHHHHHHHhhccCChhHHHHhcccCCC----------CCe
Q 044412 29 IIANQLKKCSSIKELECVYATIVKT-----N-ANLD-CFLAKQFISFCTSRFHFIDYTILVFPQMQE----------PNV 91 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~----------~~~ 91 (311)
.+..++...+++.++..+|..+.+- | -.|. ..+++.|-.+| .+.|++++|...++...+ +.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly-~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY-YKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 4777788889999998888877743 2 1222 25667777789 999999998888766532 222
Q ss_pred eeeec-----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcC-C-CchhHHHHHHHHHHhCCCCccchHHHHHHhc
Q 044412 92 FVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF-S-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 92 ~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~-~-~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
.+... +...+.+++|..+++.-.+. +. ...|. . --..+++.|-..|-+.|++++ |+++++
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i-------~~--~~~g~~~~~~a~~~~nl~~l~~~~gk~~e----a~~~~k 391 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKI-------YL--DAPGEDNVNLAKIYANLAELYLKMGKYKE----AEELYK 391 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------HH--hhccccchHHHHHHHHHHHHHHHhcchhH----HHHHHH
Confidence 22111 88889999999999865431 11 11111 1 124689999999999999999 555554
Q ss_pred cCCCCCHhHHHHHHHHHHHHHHHHHhhCCC---C-cHhHHHHHHHHHHhCCChhHHHHHHHH----HHhcCC-CCC-HHH
Q 044412 165 EMPERKFATWNTMIDAYARLAELLFNKMPA---W-DIRSWTTMITSYSQNKQFREALDAFNK----TKKSGT-GSD-QVT 234 (311)
Q Consensus 165 ~~~~~~~~~~~~li~~~~~~a~~~~~~m~~---~-~~~~y~~li~~~~~~g~~~~a~~~~~~----m~~~g~-~p~-~~t 234 (311)
. |..+..+... + .-..+|-|-..|-+.++.++|..+|.+ |+..|. .|| ..+
T Consensus 392 ~-------------------ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 392 K-------------------AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred H-------------------HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 4 2222222221 1 234677888889889999999999988 433342 333 367
Q ss_pred HHHHHHHHhccCChhhHHHHHHh
Q 044412 235 MATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 235 ~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|..|...|.+.|+++.|.++.+.
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999999999888654
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.022 Score=52.39 Aligned_cols=268 Identities=13% Similarity=0.193 Sum_probs=160.3
Q ss_pred HHHHhhccChhhHHHHHHHHH-HhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccCCChhH
Q 044412 31 ANQLKKCSSIKELECVYATIV-KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQ 105 (311)
Q Consensus 31 ~~~l~~~~~~~~~~~l~~~m~-~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~ 105 (311)
..++...+++...+..|+... +.-++....+|...+... ...|-.+.+..++....+-+...-+. +++.+++++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv-~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFV-ESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHH-HhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHH
Confidence 334444445555555554333 345566667777777777 77777777777776654322222111 677777777
Q ss_pred HHHHHHHHHHCCCCch-------HHHH-------------------HHHHhcC--CCc--hhHHHHHHHHHHhCCCCccc
Q 044412 106 AIAFYLYMLRAEVLLT-------TVHG-------------------QVWKNGF--SSP--VFVQTAMVDNYSYSNKFFES 155 (311)
Q Consensus 106 a~~~~~~m~~~~~~p~-------~~~~-------------------~~~~~g~--~~~--~~~~~~ll~~~~~~g~~~~a 155 (311)
|-+.+........-.+ +++. .+.+.|+ -+| ...|++|-+-|.+.|++++
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek- 266 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK- 266 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH-
Confidence 7777777654322111 1111 1222232 233 3579999999999999999
Q ss_pred hHHHHHHhccCCC--CCHhHHHHHHHHHHHH---------------------------HHHHHhhCC-------------
Q 044412 156 RRVSRRLFDEMPE--RKFATWNTMIDAYARL---------------------------AELLFNKMP------------- 193 (311)
Q Consensus 156 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~---------------------------a~~~~~~m~------------- 193 (311)
|+.++++... ..+.-|+.+.++|+.- ...-|+.+.
T Consensus 267 ---arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 267 ---ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred ---HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 7777776544 3444567777777663 011111110
Q ss_pred --CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHhccCChhhHHHHHHh--------
Q 044412 194 --AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD------QVTMATVLSACAHLGALDLGRGIQIY-------- 257 (311)
Q Consensus 194 --~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~li~a~~~~~~~~~a~~~~~~-------- 257 (311)
..++..|..-+. +..|+..+-+..|.+..+. +.|- ...|..+-+-|-..|+++.|+.+|+.
T Consensus 344 Qn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 013445544433 3356778888888887653 3332 34577778888889999999999988
Q ss_pred -----------------hCChHHHHHHHhhcC---C------------------CCchhHHHHHHHHHhcCChHHHHHHH
Q 044412 258 -----------------CRSLGRSLLVFFKLR---E------------------KNLLCWNSITEALAIHGFAHEALGMF 299 (311)
Q Consensus 258 -----------------~~~~~~a~~~~~~~~---~------------------p~~~~~~~li~~~~~~g~~~~a~~~~ 299 (311)
..+.+.|.++.++-. + .....|...++---..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333444444444322 1 13356777777777788888888888
Q ss_pred HHHHHcC
Q 044412 300 DRMTYEN 306 (311)
Q Consensus 300 ~~M~~~g 306 (311)
+++.+-.
T Consensus 501 driidLr 507 (835)
T KOG2047|consen 501 DRIIDLR 507 (835)
T ss_pred HHHHHHh
Confidence 8887643
No 68
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.64 E-value=0.03 Score=53.26 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=85.3
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhc---ccCCCCCeeeeec----cccCC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVF---PQMQEPNVFVYHA----FSSLR 101 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~---~~m~~~~~~~~~~----~~~~~ 101 (311)
.....+-+.|+..+++.++...++..- -....|..|-..| -..|+.+++...+ .++...|..-|.. ....|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~Iy-EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIY-EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHH-HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 344555667999999999999998753 4677899999999 9999999998876 3344445444444 56678
Q ss_pred ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC
Q 044412 102 HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~ 167 (311)
.+.+|.-.|.+..+.. +++...+---...|-+.|+...|.+.-.+++..++
T Consensus 222 ~i~qA~~cy~rAI~~~---------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN---------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred cHHHHHHHHHHHHhcC---------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 8999999998876652 34444444455667777777775555555555555
No 69
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.0013 Score=46.63 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC----C
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR----E 273 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~----~ 273 (311)
|-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++...-..+. -.++-....++.+|. +
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i-----e~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI-----ENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH-----HHHHHHHHHHHHHHHHhccC
Confidence 445667777777999999999999999999 999999999999998755322111 112335677777776 8
Q ss_pred CCchhHHHHHHHHHhc
Q 044412 274 KNLLCWNSITEALAIH 289 (311)
Q Consensus 274 p~~~~~~~li~~~~~~ 289 (311)
|+..|||+++.++.+.
T Consensus 102 P~~etYnivl~~Llkg 117 (120)
T PF08579_consen 102 PNDETYNIVLGSLLKG 117 (120)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999988753
No 70
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.60 E-value=0.00023 Score=56.51 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=62.0
Q ss_pred CCchhHHHHHHHHHHhC-----CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHH
Q 044412 133 SSPVFVQTAMVDNYSYS-----NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSY 207 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~ 207 (311)
..+..+|..+|+.|.+. |.++- ....+..|.+-++ +.|..+|+.||+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeF----I~aAL~~M~efgv----------------------~kDL~~Y~~LLDvF 97 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEF----IYAALKKMDEFGV----------------------EKDLEVYKALLDVF 97 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHH----HHHHHHHHHHcCC----------------------cccHHHHHHHHHhC
Confidence 56788888888888766 33444 4445555544222 23444444444444
Q ss_pred HhC----------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 208 SQN----------------KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 208 ~~~----------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
=+. .+-+-|++++++|...|+-||..|+..|++.+++.+..
T Consensus 98 PKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 98 PKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 331 23578999999999999999999999999999997754
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.54 E-value=0.073 Score=49.28 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC--CCcHhHHHHHHHHH
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP--AWDIRSWTTMITSY 207 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~--~~~~~~y~~li~~~ 207 (311)
....|--...-+...|++..|+.+....|+.-+- +...|-.-++--... |+.+|.+-. .|+...|.--+.--
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 3445555555677778888855555555544332 223444444433333 777776554 46666666555555
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHH
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQV-TMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSL 265 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~ 265 (311)
-..+..++|++++++-.+. -|+.. .|..+=+.+-..++++.|+..+.. .|.+-.|.
T Consensus 662 r~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 5568889999998887763 45544 455555667778888888887776 66777888
Q ss_pred HHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 266 LVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 266 ~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+|++-. ..|...|-..|+.=.+.|+.+.|..+..+..+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888766 34678899999999999999999887766543
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.052 Score=47.46 Aligned_cols=86 Identities=12% Similarity=-0.068 Sum_probs=58.0
Q ss_pred HHHHHHHhhccChhhH--HHHHHHHH-HhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------c
Q 044412 28 HIIANQLKKCSSIKEL--ECVYATIV-KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------F 97 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~--~~l~~~m~-~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~ 97 (311)
..++.++..|...++. -+.+-.+. ..-++-|......+-+.+ ...|+.+.|...|++...-|..+... +
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~-~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCL-YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhh-hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHH
Confidence 4555555555444444 33333333 344667788889999999 99999999999999876555444333 6
Q ss_pred ccCCChhHHHHHHHHHH
Q 044412 98 SSLRHPLQAIAFYLYML 114 (311)
Q Consensus 98 ~~~~~~~~a~~~~~~m~ 114 (311)
.+.|+.++...+-..+.
T Consensus 277 ~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLF 293 (564)
T ss_pred HhccCHhhHHHHHHHHH
Confidence 77788777777766664
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.43 E-value=0.0034 Score=47.60 Aligned_cols=97 Identities=9% Similarity=-0.109 Sum_probs=74.2
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~ 276 (311)
...+...-..+...|++++|...|....... +.+...|..+-.++...|++++|...|+..-..+ ..+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----------p~~~ 92 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD----------ASHP 92 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----------CCCc
Confidence 3345556777888999999999999987642 3467788888889999999996666553322111 2467
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..+..+-.++...|+.++|...|++..+
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999998775
No 74
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0035 Score=55.02 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=131.2
Q ss_pred HhhccChhhHHHHHHHHHHhccCcchhHHHHHHH---HHhhccCChhHHHHhcccCCCCCeee----eec---cccCCCh
Q 044412 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFIS---FCTSRFHFIDYTILVFPQMQEPNVFV----YHA---FSSLRHP 103 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~---~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~---~~~~~~~ 103 (311)
++...++.++.+.-+..+.. |.+--.++.. .. .-.|++++|.+.+.+....|..+ ||+ +-..|++
T Consensus 466 lqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~-f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l 540 (840)
T KOG2003|consen 466 LQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIA-FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL 540 (840)
T ss_pred HhcccchhHHHHHHHHHhcc----cccCHHHhhcCCcee-eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH
Confidence 34444566665555544432 3333333332 22 45688888888888877666544 344 6667888
Q ss_pred hHHHHHHHHHHHCCCCch-------------------HHHHHHHH-hcC-CCchhHHHHHHHHHHhCCCCccchHHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLT-------------------TVHGQVWK-NGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRL 162 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~-------------------~~~~~~~~-~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~ 162 (311)
++|++.|-.+. ++..+ +..+++.+ ..+ +-|+.+..-|-+.|-+.|+-..|.+..-.-
T Consensus 541 deald~f~klh--~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yds 618 (840)
T KOG2003|consen 541 DEALDCFLKLH--AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS 618 (840)
T ss_pred HHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc
Confidence 88888776543 22222 33333322 234 446889999999999999999944443333
Q ss_pred hccCCCCCHhHHHHHHHHHHHH-----HHHHHhh--CCCCcHhHHHHHHHHHHh-CCChhHHHHHHHHHHhcCCCCCHHH
Q 044412 163 FDEMPERKFATWNTMIDAYARL-----AELLFNK--MPAWDIRSWTTMITSYSQ-NKQFREALDAFNKTKKSGTGSDQVT 234 (311)
Q Consensus 163 ~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~--m~~~~~~~y~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t 234 (311)
+...+. ++.+..=|-..|... +...|++ +.+|+..-|..||..|.+ .|++++|+++|++..+. ++-|...
T Consensus 619 yryfp~-nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 619 YRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred ccccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHH
Confidence 333322 333322233333332 7777764 458999999999976655 69999999999998765 7888999
Q ss_pred HHHHHHHHhccCChh
Q 044412 235 MATVLSACAHLGALD 249 (311)
Q Consensus 235 ~~~li~a~~~~~~~~ 249 (311)
...|+..|...|..+
T Consensus 697 lkflvri~~dlgl~d 711 (840)
T KOG2003|consen 697 LKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHhccccchh
Confidence 999999998887543
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.35 E-value=0.0093 Score=55.59 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHhhCCCCcHhH--HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 185 AELLFNKMPAWDIRS--WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 185 a~~~~~~m~~~~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|..+++.+++.++.+ |.-+-+.|+..|+++.|.++|.+-- .++-.|..|.+.|.++.|.++-.+
T Consensus 751 ai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 751 AISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHH
Confidence 677788777655443 5555566777777777777665421 234445555566666555555444
No 76
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0014 Score=46.46 Aligned_cols=79 Identities=8% Similarity=0.171 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCC--------C
Q 044412 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK--------Q 212 (311)
Q Consensus 141 ~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g--------~ 212 (311)
.-|..+...+++.. ...+++..++.+ +.-|++.+||.++.+.++.. +
T Consensus 30 ~~I~~~~~~~d~N~----I~~lYqslkRN~---------------------i~lPsv~~Yn~VL~Si~~R~lD~~~ie~k 84 (120)
T PF08579_consen 30 DNINSCFENEDYNI----INPLYQSLKRNG---------------------ITLPSVELYNKVLKSIAKRELDSEDIENK 84 (120)
T ss_pred HHHHHHHhhcchHH----HHHHHHHHHhcC---------------------CCCCcHHHHHHHHHHHHHccccchhHHHH
Confidence 34555555577877 555555544333 23467778888888877752 3
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
+-..+.+|++|...+++|+..||+.++..+.+
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 45678899999999999999999999998875
No 77
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.011 Score=48.52 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=72.7
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH-hHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF-ATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~-~~~~ 175 (311)
|++.+++++|++..+... ..... ..=+..+.+..++|- |+..++.|.+-|- .|.+
T Consensus 118 ~~~~~~~deAl~~~~~~~------------------~lE~~--Al~VqI~lk~~r~d~----A~~~lk~mq~ided~tLt 173 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE------------------NLEAA--ALNVQILLKMHRFDL----AEKELKKMQQIDEDATLT 173 (299)
T ss_pred hhcCCChHHHHHHHhccc------------------hHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHccchHHHHH
Confidence 677777777777665421 12222 222334556667777 7777777766432 3444
Q ss_pred HHHHHHHHH---------HHHHHhhCCC---CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 044412 176 TMIDAYARL---------AELLFNKMPA---WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243 (311)
Q Consensus 176 ~li~~~~~~---------a~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 243 (311)
-|-.+|.+. |.-+|++|-+ |+..+-|.+.-++...|++++|..++++...+. .-|+.|...+|-+-.
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLAL 252 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 455555543 5666666653 566666666777777788888888888877653 224555444444333
Q ss_pred ccC
Q 044412 244 HLG 246 (311)
Q Consensus 244 ~~~ 246 (311)
..|
T Consensus 253 ~~G 255 (299)
T KOG3081|consen 253 HLG 255 (299)
T ss_pred HhC
Confidence 333
No 78
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.005 Score=49.09 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=82.7
Q ss_pred HHHhhC--CCCcHhHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh--
Q 044412 187 LLFNKM--PAWDIRSWTTMITSYSQN-----KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-- 257 (311)
Q Consensus 187 ~~~~~m--~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~-- 257 (311)
..|++. ..+|-.+|..+|+.|.+. |.++=...-+..|.+-|++-|..+|+.||+.+=+..-. ...+|+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~F 112 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAEF 112 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHHh
Confidence 445544 467889999999999875 66777788899999999999999999999999864322 2333332
Q ss_pred ---hCChHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCh
Q 044412 258 ---CRSLGRSLLVFFKLR----EKNLLCWNSITEALAIHGFA 292 (311)
Q Consensus 258 ---~~~~~~a~~~~~~~~----~p~~~~~~~li~~~~~~g~~ 292 (311)
..+.+-|.+++++|+ -||..|+..++..+.+.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 556667899999999 69999999999999988864
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.30 E-value=0.11 Score=45.72 Aligned_cols=222 Identities=11% Similarity=0.044 Sum_probs=122.2
Q ss_pred HhhccChhhHHHHHHHHHHhccCcchhHHH---HHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------cccCCCh
Q 044412 34 LKKCSSIKELECVYATIVKTNANLDCFLAK---QFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------FSSLRHP 103 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~---~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~~ 103 (311)
+...++.+.+..+++...+.. +.|...+. .+.... ...+..+.+.+.++.....+...+.. +...|++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLG-DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhc-ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 445577777777777776652 22333333 122222 23455566666665422211111111 6778888
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
++|.+.+++..+.. +.+...+..+-..|...|++++ +...++...+...
T Consensus 131 ~~A~~~~~~al~~~---------------p~~~~~~~~la~i~~~~g~~~e----A~~~l~~~l~~~~------------ 179 (355)
T cd05804 131 DRAEEAARRALELN---------------PDDAWAVHAVAHVLEMQGRFKE----GIAFMESWRDTWD------------ 179 (355)
T ss_pred HHHHHHHHHHHhhC---------------CCCcHHHHHHHHHHHHcCCHHH----HHHHHHhhhhccC------------
Confidence 88888888876642 3345667777778888888888 5555554332110
Q ss_pred HHHHHHhhCCCCc--HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCHHHH-H--HHHHHHhccCChhhHHHHHHh
Q 044412 184 LAELLFNKMPAWD--IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTM-A--TVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 184 ~a~~~~~~m~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~-~--~li~a~~~~~~~~~a~~~~~~ 257 (311)
..++ ...|..+...+...|++++|++++++...... .+..... + .++.-+...|....+...
T Consensus 180 ---------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w--- 247 (355)
T cd05804 180 ---------CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW--- 247 (355)
T ss_pred ---------CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH---
Confidence 0122 23466777888999999999999999864322 2222211 1 233333344443333222
Q ss_pred hCChHHHHHHHhhcCCCCchhHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 044412 258 CRSLGRSLLVFFKLREKNLLCWN--SITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 258 ~~~~~~a~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+................++ ....++...|+.++|..+++.+..
T Consensus 248 ----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 248 ----EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ----HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0010110000000122233 567788899999999999998875
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.27 E-value=0.12 Score=47.77 Aligned_cols=225 Identities=13% Similarity=0.148 Sum_probs=114.2
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-----------cccCCChhHHHHHHHHHHHCCCCchH-HHHH-
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-----------FSSLRHPLQAIAFYLYMLRAEVLLTT-VHGQ- 126 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~- 126 (311)
..|-.+-+.| -+.|+++.|..+|++..+.+-.+.+. =.+..+++.|+++. ++.-..|.. ....
T Consensus 388 ~Lw~~faklY-e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm---~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 388 TLWVEFAKLY-ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM---RRATHVPTNPELEYY 463 (835)
T ss_pred hHHHHHHHHH-HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH---HhhhcCCCchhhhhh
Confidence 3555666666 66677777777776655433222211 12233444444433 333333331 0000
Q ss_pred ----HHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh------HHHHHHH--HHHHHHHHHHhhCCC
Q 044412 127 ----VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA------TWNTMID--AYARLAELLFNKMPA 194 (311)
Q Consensus 127 ----~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~------~~~~li~--~~~~~a~~~~~~m~~ 194 (311)
-.+..+.-+..+|.-.++.--..|-++. .+.+++.+.+.-+. -|..++. .|...+.+++++-..
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes----tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFES----TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0011112233445555555555666666 56666655443222 2222222 122225555555542
Q ss_pred ----CcHh-HHHHHHHHHHhC---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh--ccCChhhHHHHHHh-------
Q 044412 195 ----WDIR-SWTTMITSYSQN---KQFREALDAFNKTKKSGTGSDQVTMATVLSACA--HLGALDLGRGIQIY------- 257 (311)
Q Consensus 195 ----~~~~-~y~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~--~~~~~~~a~~~~~~------- 257 (311)
|++. .||.-+.-+.+. ..++.|.++|++-.+ |++|...-+--|+.|-. +.|....|..+++.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 4432 455555555542 346677777777666 66665544443333322 23555555555555
Q ss_pred ----------------------------------------------------hCChHHHHHHHhhcC---CC--CchhHH
Q 044412 258 ----------------------------------------------------CRSLGRSLLVFFKLR---EK--NLLCWN 280 (311)
Q Consensus 258 ----------------------------------------------------~~~~~~a~~~~~~~~---~p--~~~~~~ 280 (311)
.|+.+.|..++.--. .| +...|+
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH
Confidence 888888888877554 34 556788
Q ss_pred HHHHHHHhcCChH
Q 044412 281 SITEALAIHGFAH 293 (311)
Q Consensus 281 ~li~~~~~~g~~~ 293 (311)
+.=.-=.++|+-+
T Consensus 699 twk~FEvrHGned 711 (835)
T KOG2047|consen 699 TWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHhcCCHH
Confidence 8877788888843
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0034 Score=52.94 Aligned_cols=201 Identities=12% Similarity=0.062 Sum_probs=112.0
Q ss_pred hccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec-----cccCCChhHHHH
Q 044412 36 KCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA-----FSSLRHPLQAIA 108 (311)
Q Consensus 36 ~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-----~~~~~~~~~a~~ 108 (311)
+.|-+++++.-+..-.+. .|-+.||-.|-+.| .+..+...|+.+|.+-.+ |.-+||-. +-.-++.++|.+
T Consensus 235 rLgm~r~AekqlqssL~q--~~~~dTfllLskvY-~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~ 311 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY-QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQ 311 (478)
T ss_pred HhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH-HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHH
Confidence 335666665444443333 46677788888888 888888888888877543 55555544 444566777777
Q ss_pred HHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHH--HH--
Q 044412 109 FYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA--RL-- 184 (311)
Q Consensus 109 ~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~--~~-- 184 (311)
+|++..+. ...++....++-..|.-.++.+-|.+..++++..+..... .|+.+--+|. ..
T Consensus 312 lYk~vlk~---------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-Lf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 312 LYKLVLKL---------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-LFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHhc---------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-HHhhHHHHHHhhcchh
Confidence 77776553 2334444455555566666666644444444443332111 1111111111 00
Q ss_pred -----HHHHHhhCCCCcHh--HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 185 -----AELLFNKMPAWDIR--SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 185 -----a~~~~~~m~~~~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
-.+-+..+..|+.. +|-.+-......|++..|.+.|+--..+. .-....+|.|--.-.+.|++++|+.+++
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 22223333344432 45555555566678888887777766542 2234566666666667777777776653
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.087 Score=51.18 Aligned_cols=183 Identities=11% Similarity=0.064 Sum_probs=113.3
Q ss_pred HHHHHHHHHhccC--cchhHHHHHHHHHhhccCChhHHHHhcccCC-CCCeeeeec------------------------
Q 044412 44 ECVYATIVKTNAN--LDCFLAKQFISFCTSRFHFIDYTILVFPQMQ-EPNVFVYHA------------------------ 96 (311)
Q Consensus 44 ~~l~~~m~~~g~~--p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~------------------------ 96 (311)
+++.++.++.+++ .|+.-.+..++++ ...+-..+-.++++.+. ++..++-|.
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAf-MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAF-MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHH-HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHH
Confidence 4556666665542 4555555566666 66666666666666654 333333222
Q ss_pred ------------cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhc
Q 044412 97 ------------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 97 ------------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
+..++.+++|..+|+. +..+....+.||+ ..+++|. |.++-+
T Consensus 1046 LdnyDa~~ia~iai~~~LyEEAF~ifkk-------------------f~~n~~A~~VLie---~i~~ldR----A~efAe 1099 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEIAIENQLYEEAFAIFKK-------------------FDMNVSAIQVLIE---NIGSLDR----AYEFAE 1099 (1666)
T ss_pred hccCCchhHHHHHhhhhHHHHHHHHHHH-------------------hcccHHHHHHHHH---HhhhHHH----HHHHHH
Confidence 3344444555555543 3455555566655 3466777 444444
Q ss_pred cCCCCCHhHHHHHHHHHHHH--HHHHHh-hCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044412 165 EMPERKFATWNTMIDAYARL--AELLFN-KMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241 (311)
Q Consensus 165 ~~~~~~~~~~~~li~~~~~~--a~~~~~-~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 241 (311)
+..+|. .|..+-++-.+. ..+-.+ -++..|...|--+|+...+.|.+++-.+++..-++..-+|...+ .||-|
T Consensus 1100 ~~n~p~--vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1100 RCNEPA--VWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred hhCChH--HHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence 444444 355554444433 111111 12345777899999999999999999999998888888888775 78899
Q ss_pred HhccCChhhHHHHHHh
Q 044412 242 CAHLGALDLGRGIQIY 257 (311)
Q Consensus 242 ~~~~~~~~~a~~~~~~ 257 (311)
|++.+++.+.+.+..-
T Consensus 1176 yAkt~rl~elE~fi~g 1191 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAG 1191 (1666)
T ss_pred HHHhchHHHHHHHhcC
Confidence 9999999888877654
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.20 E-value=0.041 Score=48.31 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=49.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc--hhH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL--LCW 279 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~--~~~ 279 (311)
.+-..+...|++++|...+++..+.. +.+...+..+-..+...|++++|...++..-.... . .|+. ..|
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~------~--~~~~~~~~~ 189 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD------C--SSMLRGHNW 189 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC------C--CcchhHHHH
Confidence 33445556677777777777766542 22344555566666666666655544322111100 0 1222 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 044412 280 NSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 280 ~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
..+...+...|++++|..++++..
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 456666667777777777776654
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.029 Score=53.85 Aligned_cols=263 Identities=12% Similarity=0.117 Sum_probs=159.0
Q ss_pred HHHHHHHhhccChhh---HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC-------CCe------
Q 044412 28 HIIANQLKKCSSIKE---LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-------PNV------ 91 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~---~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-------~~~------ 91 (311)
-.+..++........ .....+.+...|-.+.+...|.+-... ...|++..|...|.+... ++.
T Consensus 418 l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh-f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH-FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH-HHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 344555544332222 255666677777778888899988888 889999999888876541 233
Q ss_pred -eeeec---cccCCChhHHHHHHHHHHHCCCCch-------------------HHHHHHHHhc---CCCchhHHHHHHHH
Q 044412 92 -FVYHA---FSSLRHPLQAIAFYLYMLRAEVLLT-------------------TVHGQVWKNG---FSSPVFVQTAMVDN 145 (311)
Q Consensus 92 -~~~~~---~~~~~~~~~a~~~~~~m~~~~~~p~-------------------~~~~~~~~~g---~~~~~~~~~~ll~~ 145 (311)
.-||. .-..++.+.|.+.|.++.+.- |. +...+ .+.+ ..-++..++.+-+.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~-lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLL-LKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHH-HHHHHhcccCCcHHHHHHHHH
Confidence 13555 444567888888888876532 22 00111 1111 12233344444445
Q ss_pred HHhCCCCccchHHHHHHhccCCC-CCHhHHHHHHHHHHHH-----------------HHHHHhhCCC---CcHhHHHHHH
Q 044412 146 YSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAYARL-----------------AELLFNKMPA---WDIRSWTTMI 204 (311)
Q Consensus 146 ~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----------------a~~~~~~m~~---~~~~~y~~li 204 (311)
|.+...+..|..--..+++.-.. +|.++.-.|=+.|.+. |..+|..... .|...=|-+-
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 55665666622222223333222 3444444444433332 6667665542 3556666666
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~ 284 (311)
-.++..|++.+|.++|...++... -+..+|-.|-.+|...|++..|.++|+.| .+-|. ++.++.+.+.|-+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~------lkkf~--~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC------LKKFY--KKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH------HHHhc--ccCCHHHHHHHHH
Confidence 677788889999999988887643 34456777788888888888666665332 11111 2457788899999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 044412 285 ALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 285 ~~~~~g~~~~a~~~~~~M~ 303 (311)
++.++|.+.+|.+.+-...
T Consensus 725 a~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999988876554
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.13 E-value=0.047 Score=43.97 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=81.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
|...|+...|..-++.-.+. .|+ .-+|..+-..|-+.|..+. |.+.|+.-..
T Consensus 45 YL~~gd~~~A~~nlekAL~~----------------DPs~~~a~~~~A~~Yq~~Ge~~~----A~e~YrkAls------- 97 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEH----------------DPSYYLAHLVRAHYYQKLGENDL----ADESYRKALS------- 97 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcCChhh----HHHHHHHHHh-------
Confidence 66888899999888887664 444 6678888888999999999 6666654322
Q ss_pred HHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHH
Q 044412 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
+...+..+-|.-=.-+|..|++++|...|++-...---| -..||..+--+..+.|+.+.|+..
T Consensus 98 ----------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 98 ----------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred ----------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 112234455555566777888888888888876642222 235677776667778888877777
Q ss_pred HHh
Q 044412 255 QIY 257 (311)
Q Consensus 255 ~~~ 257 (311)
+..
T Consensus 162 l~r 164 (250)
T COG3063 162 LKR 164 (250)
T ss_pred HHH
Confidence 655
No 86
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.033 Score=45.80 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=87.3
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHH--HHHHHHHHHH-HHHHHhhCCCC-cHhHHHH
Q 044412 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW--NTMIDAYARL-AELLFNKMPAW-DIRSWTT 202 (311)
Q Consensus 127 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~--~~li~~~~~~-a~~~~~~m~~~-~~~~y~~ 202 (311)
+......-+...-..-...|+..|++++ |.+..+.+..-+.... .++++..... |++.++.|.+- +..|.+-
T Consensus 99 ~a~~~~~sn~i~~l~aa~i~~~~~~~de----Al~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 99 VADSTDGSNLIDLLLAAIIYMHDGDFDE----ALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred HHhhccchhHHHHHHhhHHhhcCCChHH----HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 3333344443333333446899999999 7777777544444332 3344444333 99999999874 4456665
Q ss_pred HHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 203 MITSYSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 203 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|-.++.+ .+.+.+|+-+|++|-++ ..|+.-+.+-...++...|++++|+.+++.
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 5555544 46799999999999764 789999999999999999999988877654
No 87
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.031 Score=49.46 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=136.9
Q ss_pred cccCCChhHHHHHHHHHHHCC-CCch------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAE-VLLT------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~-~~p~------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 157 (311)
.....++++|+.+|+++++.. ...+ ..+.+.+-.--+--+.|+-.+-+-|+-.++.++
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEK--- 348 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEK--- 348 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHH---
Confidence 566789999999999998763 1112 111111111112234566677777888888999
Q ss_pred HHHHHhccCCCCC---HhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 044412 158 VSRRLFDEMPERK---FATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKS 226 (311)
Q Consensus 158 ~a~~~~~~~~~~~---~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (311)
|...|++..+.| ...|+.|=+-|... |.+-+.+-. ..|-..|-.|-.+|.-.+.+.-|+-+|++-.+.
T Consensus 349 -Av~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 349 -AVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred -HHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 888888876633 35788888888775 555555433 458899999999999999999999999998764
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 227 GTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 227 g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
-+-|...|.+|=.+|.+.++.++|.+.|...-... ..+...+..|-+.|-+-++.++|...|.+-.
T Consensus 428 -kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~----------dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 428 -KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG----------DTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred -CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 24478899999999999999997776664411111 1233578888888889999988877776644
No 88
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.07 E-value=0.0037 Score=55.69 Aligned_cols=82 Identities=7% Similarity=-0.036 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchh
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLC 278 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~ 278 (311)
|.+++|+.|...|..+++++++..=..-|+=||.+|||.||+.+.+.|++..|.++..++-.-+. -.+..|
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~---------~~~~~t 175 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEE---------FDNPST 175 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhc---------cCCchH
Confidence 44578888888888888888888877788888888888888888888888766554322111111 245566
Q ss_pred HHHHHHHHHhc
Q 044412 279 WNSITEALAIH 289 (311)
Q Consensus 279 ~~~li~~~~~~ 289 (311)
+..-+.+|.+.
T Consensus 176 ~~L~l~~~~~~ 186 (429)
T PF10037_consen 176 QALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 89
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.04 E-value=0.011 Score=43.95 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=74.8
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+......+...+...|++++|.+.|+.....+ +.+...+..+-..+...|+++.|..+++..-..+ ..+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------p~~ 84 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD----------PDD 84 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCC
Confidence 34456667777888999999999999987753 4466778888888889899987766553322211 345
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..+|..+-..+...|++++|...|++..+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677888888999999999999999887763
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.02 E-value=0.059 Score=46.22 Aligned_cols=78 Identities=9% Similarity=-0.061 Sum_probs=35.1
Q ss_pred hhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCe-eeeec----cccCCChhHHH
Q 044412 35 KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNV-FVYHA----FSSLRHPLQAI 107 (311)
Q Consensus 35 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~----~~~~~~~~~a~ 107 (311)
...|+...+...+...++.. +.++..|+.+-..+ ...|+++.|...|++..+ |+. ..|.. +...|++++|+
T Consensus 75 ~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 75 DSLGLRALARNDFSQALALR-PDMADAYNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 33344444444444444432 12334555555555 555555555555555432 221 11111 44445555555
Q ss_pred HHHHHHH
Q 044412 108 AFYLYML 114 (311)
Q Consensus 108 ~~~~~m~ 114 (311)
+.|+...
T Consensus 153 ~~~~~al 159 (296)
T PRK11189 153 DDLLAFY 159 (296)
T ss_pred HHHHHHH
Confidence 5555543
No 91
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.00 E-value=0.0057 Score=54.53 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=87.9
Q ss_pred hccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC-CCee---eee--c----cccCCChhHHHHHHHHHHHCCCCchH
Q 044412 53 TNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-PNVF---VYH--A----FSSLRHPLQAIAFYLYMLRAEVLLTT 122 (311)
Q Consensus 53 ~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-~~~~---~~~--~----~~~~~~~~~a~~~~~~m~~~~~~p~~ 122 (311)
.+.+.+......+++.+ ....+++.+..++-.... |+.. .|+ + |...|..++++++++.=...|
T Consensus 60 ~~~~vS~~dld~fvn~~-~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG----- 133 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNV-ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG----- 133 (429)
T ss_pred cCCCCcHHHHHHHHhhc-CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-----
Confidence 45566778888899999 888888989888766653 2211 122 2 888889999999988765555
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH
Q 044412 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184 (311)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 184 (311)
+-||..++|.||+.+.+.|++..|.+++..+..+-...+..|+...+.+|.+.
T Consensus 134 ---------iF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 134 ---------IFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ---------cCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 89999999999999999999999777777666555555556666666666553
No 92
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.99 E-value=0.016 Score=51.38 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=72.2
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHH
Q 044412 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264 (311)
Q Consensus 185 a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a 264 (311)
|.++|+++.+.+....-.+...+...++-.+|.+++.+..+. .+-|......-..-|...++.+.|..
T Consensus 188 ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~----------- 255 (395)
T PF09295_consen 188 AIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALE----------- 255 (395)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHH-----------
Confidence 555666665544445556777777777888888888887753 23355555555666777777775544
Q ss_pred HHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 265 LLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 265 ~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+.++.. .|+ ..+|..|..+|...|++++|+-.++-+.
T Consensus 256 --iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 --IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 444433 354 5699999999999999999998888764
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.98 E-value=0.0097 Score=40.16 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchh
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLC 278 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~ 278 (311)
+|..+...+...|++++|..++.+..+.. +.+...+..+...+...++++.|...+...-.. ...+..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL----------DPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCcchhH
Confidence 35566777888999999999999987752 233466777778888888888666554332111 1234468
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 279 WNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+..+...+...|++++|...+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 88888999999999999999988765
No 94
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.25 Score=44.19 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=58.3
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC--CCCeeeeec----cccCCC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ--EPNVFVYHA----FSSLRH 102 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~----~~~~~~ 102 (311)
-|+-+=...|++.-++++|+.=.+ ..||...|++.|++= .+-..++.|..+++... .|++.+|-- =.+.|.
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fE-lRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFE-LRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHH-HHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 344444556677777777765443 579999999999999 99999999999998854 577666644 345566
Q ss_pred hhHHHHHHHHH
Q 044412 103 PLQAIAFYLYM 113 (311)
Q Consensus 103 ~~~a~~~~~~m 113 (311)
...|.++|+.-
T Consensus 223 ~~~aR~VyerA 233 (677)
T KOG1915|consen 223 VALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 95
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.96 E-value=0.0017 Score=55.20 Aligned_cols=139 Identities=16% Similarity=0.212 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec--------cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
.+|-.++++. .|.+.++.|..+|.+..+....+|.. +...++.+.|.++|+...+.
T Consensus 2 ~v~i~~m~~~-~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFM-RRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------------- 65 (280)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH-HHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence 4677777777 77777778888877776555555554 44567777799999987654
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCC-CC-cHhHHHHHHHHHHh
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP-AW-DIRSWTTMITSYSQ 209 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~-~~-~~~~y~~li~~~~~ 209 (311)
+..+...|...|+.+.+.|+.+. ++.+|++.... +. +. -...|...|+-=.+
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~----aR~lfer~i~~----------------------l~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINN----ARALFERAISS----------------------LPKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHH----HHHHHHHHCCT----------------------SSCHHHCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHH----HHHHHHHHHHh----------------------cCchhHHHHHHHHHHHHHHH
Confidence 57788899999999999999999 77777654331 11 11 24578888988888
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044412 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 242 (311)
.|+++.+.++..++.+. -|+..+...+++-|
T Consensus 120 ~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 120 YGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred cCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 89999999999998874 45544545555433
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.95 E-value=0.041 Score=45.29 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=96.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc----hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP----VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+...|++++|...|++.... .|+ ...+..+-.+|.+.|++++|......+.+.-+.....
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESR----------------YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHh----------------CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 66788999999999988653 333 2466777889999999999555544444433321111
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHh--------CCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHH--
Q 044412 173 TWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQ--------NKQFREALDAFNKTKKSGTGSDQV-TMATVLSA-- 241 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~a-- 241 (311)
.+ ++..+-.++.. .|+.++|.+.|+...+. .|+.. .+..+...
T Consensus 107 ~~------------------------a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 107 DY------------------------AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY 160 (235)
T ss_pred HH------------------------HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH
Confidence 11 12122222222 26678888888888764 34432 22111110
Q ss_pred -Hhcc--CChhhHHHHHHhhCChHHHHHHHhhcC--CCC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 242 -CAHL--GALDLGRGIQIYCRSLGRSLLVFFKLR--EKN----LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 242 -~~~~--~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~----~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.... .....| .++-..|+...|...|++.. .|+ ...+..+..++...|++++|..+++.+...
T Consensus 161 ~~~~~~~~~~~~a-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 161 LRNRLAGKELYVA-RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0000 000111 12223455556666665554 232 468899999999999999999999988764
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.11 Score=45.56 Aligned_cols=210 Identities=7% Similarity=-0.012 Sum_probs=129.9
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhc-cCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeee---eec----cc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTN-ANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV---YHA----FS 98 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~----~~ 98 (311)
+..|.-+|+.-|+.++...+...+.... .+..+..... ... ....+++.|+.+-+.-.+.+..+ +-. +.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~--~~l-~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA--QLL-YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh--hhh-hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 4455555555555555555544444321 1111111111 111 23445555555554433222221 111 55
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC--HhHHH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK--FATWN 175 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~--~~~~~ 175 (311)
..+++++|.=.|++-.. +. -+..+|.-|+++|...|++.+|.-+|....+.|+..- .-.+.
T Consensus 346 ~~~R~~~A~IaFR~Aq~----------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM----------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred hccchHHHHHHHHHHHh----------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 66677777777766543 34 4578999999999999999999988988888877531 11111
Q ss_pred HHHHHH---HHH-HHHHHhhCC--CCc-HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 176 TMIDAY---ARL-AELLFNKMP--AWD-IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 176 ~li~~~---~~~-a~~~~~~m~--~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
+.+... .+. |+.+++.-. .|+ ...-+.+-..+...|+.++++.+++.-.. ..||...-+.|-+-+.-.+.+
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhH
Confidence 122111 111 777777654 455 34567777888889999999999999776 479999989998888888888
Q ss_pred hhHHHHHHh
Q 044412 249 DLGRGIQIY 257 (311)
Q Consensus 249 ~~a~~~~~~ 257 (311)
+++...|..
T Consensus 488 Q~am~~y~~ 496 (564)
T KOG1174|consen 488 QKAMEYYYK 496 (564)
T ss_pred HHHHHHHHH
Confidence 888777665
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.94 E-value=0.0085 Score=45.40 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
++..+..+-..+...|++++ |...|+.....+ ..+...|..+-..+...|+++
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~----A~~~~~~al~~~-----------------------P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSR----AVIDFSWLVMAQ-----------------------PWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcC-----------------------CCcHHHHHHHHHHHHHHhhHH
Confidence 33345567778899999999 666666543321 236778888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
+|+..|++..+.. +.+..++..+-.++...|+.++|...++
T Consensus 76 ~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 76 TAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998742 4467788888888889899887766553
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.94 E-value=0.024 Score=54.17 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=90.0
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
..+.|..++|+.+++...+ +.|+ ......+...+.+.+++++|...+++.+..
T Consensus 96 ~~~~g~~~ea~~~l~~~~~----------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------- 149 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQ----------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---------- 149 (694)
T ss_pred HHHcCCcHHHHHHHHHHHh----------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----------
Confidence 4467888999999988876 4565 566677788899999999977777777665
Q ss_pred HHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHH
Q 044412 176 TMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~ 253 (311)
.| +....+.+-.++.+.|++++|+++|++.... .|+ ..++..+-.++-..|+.+.|..
T Consensus 150 ------------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 150 ------------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred ------------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 33 3456667778888899999999999999872 344 6788888888889999999988
Q ss_pred HHHh
Q 044412 254 IQIY 257 (311)
Q Consensus 254 ~~~~ 257 (311)
.|+.
T Consensus 210 ~~~~ 213 (694)
T PRK15179 210 VLQA 213 (694)
T ss_pred HHHH
Confidence 8877
No 100
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.82 E-value=0.016 Score=42.64 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=73.5
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
|..++.++|-++++.|+++....+..+++.--....... .. + --..-..|+..+-.+++.+|+..|++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-~~----~------~~~spl~Pt~~lL~AIv~sf~~n~~i~ 69 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-GD----Y------PPSSPLYPTSRLLIAIVHSFGYNGDIF 69 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-Cc----c------CCCCCCCCCHHHHHHHHHHHHhcccHH
Confidence 456788999999999999995555555554322111000 00 0 000011489999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCh
Q 044412 215 EALDAFNKTKK-SGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 215 ~a~~~~~~m~~-~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
.|+++.+...+ -+++.+..+|..|++-+....+.
T Consensus 70 ~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 70 SALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999876 57888999999999877665543
No 101
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.74 E-value=0.098 Score=42.22 Aligned_cols=177 Identities=7% Similarity=0.006 Sum_probs=126.4
Q ss_pred HhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC---CCeeeeec----cccCCChhHH
Q 044412 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE---PNVFVYHA----FSSLRHPLQA 106 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~----~~~~~~~~~a 106 (311)
+-..|+...++.-++..+++. +.+..+|..+-..| .+.|..+.|.+-|++... .+-...|- +|..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Y-q~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYY-QKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH-HHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 345577777777777777763 23446778888888 999999999999987542 23333333 8888999999
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHH
Q 044412 107 IAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186 (311)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~ 186 (311)
...|++-...-. ..-...+|..+--|..+.|+++. |+..|++-.+.|.
T Consensus 123 ~q~F~~Al~~P~-------------Y~~~s~t~eN~G~Cal~~gq~~~----A~~~l~raL~~dp--------------- 170 (250)
T COG3063 123 MQQFERALADPA-------------YGEPSDTLENLGLCALKAGQFDQ----AEEYLKRALELDP--------------- 170 (250)
T ss_pred HHHHHHHHhCCC-------------CCCcchhhhhhHHHHhhcCCchh----HHHHHHHHHHhCc---------------
Confidence 999988654311 23335688888889999999999 7777665433211
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHH
Q 044412 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 187 ~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
....+.-.+-...-+.|++-.|..+++.....|. ++..+.-..|.--.+.|+.+.+-.
T Consensus 171 --------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 171 --------QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred --------CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 1233445666777788999999999999887765 888888888887777777775543
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.12 Score=47.01 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=70.3
Q ss_pred HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc--CC----CCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 185 AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKS--GT----GSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 185 a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~----~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
|.+.|.+-. .| |....+-+--..-..+.+.+|..+|+.-... .+ .....|++.|=.+|.+.+..++|...+
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 666665443 23 4445554444444467888999888876521 11 124456777777788877777555444
Q ss_pred HhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
+..- .+...|..+|.++--.|...|+++.|.+.|.+-.. +.||
T Consensus 479 q~aL----------~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~ 521 (611)
T KOG1173|consen 479 QKAL----------LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPD 521 (611)
T ss_pred HHHH----------HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCc
Confidence 3210 11245778888888888888888888888887653 4454
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.71 E-value=0.0071 Score=41.05 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 044412 210 NKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI 288 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~ 288 (311)
.|++++|+.+++++.+..- .|+...+-.+-.++.+.|++++|..+++. ...+ ..+....-.+-.+|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~----------~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD----------PSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH----------HCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC----------CCCHHHHHHHHHHHHH
Confidence 5789999999999987533 22455555688899999999977666544 1111 1233444556788889
Q ss_pred cCChHHHHHHHHH
Q 044412 289 HGFAHEALGMFDR 301 (311)
Q Consensus 289 ~g~~~~a~~~~~~ 301 (311)
.|++++|.+.|++
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 9999999998875
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.68 E-value=0.054 Score=38.90 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC-
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGT--GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN- 275 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~- 275 (311)
++......+.+.|++++|.+.|..+.+..- ......+..+..++.+.|+++.|...++..-. . .|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~-----~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK------K-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH------H-----CCCC
Confidence 455667778889999999999999987421 11234666788889999998866655432111 0 233
Q ss_pred ---chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 ---LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ---~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...+..+...+...|+.++|...+++..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 456788888899999999999999999875
No 105
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.21 Score=44.84 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCC-----CCHhHHHHHHHHHHHH---HHHHHhhCCCC---cHhHHHHHHHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPE-----RKFATWNTMIDAYARL---AELLFNKMPAW---DIRSWTTMITSY 207 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~---a~~~~~~m~~~---~~~~y~~li~~~ 207 (311)
|--+-.+|....+.++ ....|+.... ||++....-+.-.... |..=|++-.+- ++..|--+--+.
T Consensus 363 yI~~a~~y~d~~~~~~----~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEK----MWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred HHHHHHHHhhhhccHH----HHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 5555557777777777 7777765543 3333222222222222 44445544432 233333332233
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh----------------------------hC
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----------------------------CR 259 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~----------------------------~~ 259 (311)
-+.++++++...|++-+++ ++-.+..|+..-..+...++++.|.+-++. -+
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~ 517 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhh
Confidence 3456777777777776654 455556666666777777777777776666 56
Q ss_pred ChHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 260 SLGRSLLVFFKLREKNL---LCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 260 ~~~~a~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
++..|.+++++-.+-|+ ..|..|-.--...|+.++|.++|++-
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66777777777665554 46888888889999999999999874
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.63 E-value=0.48 Score=42.47 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=93.0
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
....|+.++|+..++++... .+-|+.-+....+.+.+.|+.++ |.+.++.+...
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---------------~P~N~~~~~~~~~i~~~~nk~~~----A~e~~~kal~l------- 369 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---------------QPDNPYYLELAGDILLEANKAKE----AIERLKKALAL------- 369 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhc-------
Confidence 44788999999999998764 23445556666778999999999 66666554321
Q ss_pred HHHHHHHHHHHHHhhCCCCc-HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWD-IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
.|+ ...+-.+-.+|.+.|++.+|+.++.+-... .+-|+..|..|-.+|...|+..++....
T Consensus 370 -----------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 370 -----------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred -----------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 233 344555678888999999999999998764 5678999999999999999998776544
Q ss_pred Hh----hCChHHHHHHH
Q 044412 256 IY----CRSLGRSLLVF 268 (311)
Q Consensus 256 ~~----~~~~~~a~~~~ 268 (311)
.+ .|+.+.|....
T Consensus 432 AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 432 AEGYALAGRLEQAIIFL 448 (484)
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 33 44444444433
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.63 E-value=0.1 Score=52.25 Aligned_cols=179 Identities=10% Similarity=0.059 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCC--------CCeeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHH
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQE--------PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
..|-..|... ...+.++.|.+++++... .-.-.|-+ -...|.-+...++|++..+.
T Consensus 1459 i~WI~YMaf~-LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy----------- 1526 (1710)
T KOG1070|consen 1459 ILWIRYMAFH-LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY----------- 1526 (1710)
T ss_pred hHHHHHHHHH-hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-----------
Confidence 4555555555 566666666666555431 11112222 12223444555555555432
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCCC--C---cH
Q 044412 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA--W---DI 197 (311)
Q Consensus 128 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~~--~---~~ 197 (311)
.-...+|..|..-|.+.+.+++|.++.+.+++... .....|...+..+.+. |.+++.+-.+ | .+
T Consensus 1527 -----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1527 -----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred -----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 23344555666666666666663333333333222 2233444444444443 4444433221 1 22
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
....-.+..-.+.|+.+.+..+|+..... .+--...|+..|+.=.+.|+.+.++.+|++
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 22223333334567777777777776654 122345677777777777777777766665
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.62 E-value=0.041 Score=45.31 Aligned_cols=170 Identities=13% Similarity=0.006 Sum_probs=102.1
Q ss_pred cchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCee----e-eec---cccCCChhHHHHHHHHHHHCCCCchHHHHH
Q 044412 57 LDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVF----V-YHA---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126 (311)
Q Consensus 57 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~----~-~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (311)
.....+-.+...+ .+.|+++.|...|+++.. |+.. . +.. +...|++++|+..|+++.+.
T Consensus 31 ~~~~~~~~~g~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---------- 99 (235)
T TIGR03302 31 WPAEELYEEAKEA-LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---------- 99 (235)
T ss_pred CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------
Confidence 3445666666777 889999999999987653 3321 1 112 78889999999999998763
Q ss_pred HHHhcCCCc-hh---HHHHHHHHHHhC--------CCCccchHHHHHHhccCCC--CCH-hHHHHHHHHHHHHHHHHHhh
Q 044412 127 VWKNGFSSP-VF---VQTAMVDNYSYS--------NKFFESRRVSRRLFDEMPE--RKF-ATWNTMIDAYARLAELLFNK 191 (311)
Q Consensus 127 ~~~~g~~~~-~~---~~~~ll~~~~~~--------g~~~~a~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~a~~~~~~ 191 (311)
.|+ .. .+..+-.++... |+.++ |.+.++.... |+. ..+..+... .. ....
T Consensus 100 ------~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~a~~~~-~~----~~~~ 164 (235)
T TIGR03302 100 ------HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAARE----AFEAFQELIRRYPNSEYAPDAKKRM-DY----LRNR 164 (235)
T ss_pred ------CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHH----HHHHHHHHHHHCCCChhHHHHHHHH-HH----HHHH
Confidence 232 11 333333444433 66777 4444444322 221 111111000 00 0000
Q ss_pred CCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG--TGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 192 m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
. ....-.+-..+.+.|++++|+..+++..+.. -+.....+..+..++...|+.++|..+++
T Consensus 165 ~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 165 L----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred H----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 0011244566888999999999999988752 22345788899999999999997776654
No 109
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.61 E-value=0.096 Score=48.36 Aligned_cols=199 Identities=11% Similarity=0.078 Sum_probs=113.3
Q ss_pred hccCChhHHHHhcccCCC--CCeeeeec-----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhH-HHHH
Q 044412 71 SRFHFIDYTILVFPQMQE--PNVFVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV-QTAM 142 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~--~~~~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~-~~~l 142 (311)
...|++++|++.++.-.. .|..++.. +.+.|+.++|..+|+.+.+++ |+-.. |..+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----------------Pdn~~Yy~~L 78 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----------------PDNYDYYRGL 78 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------CCcHHHHHHH
Confidence 677888888888866543 34334333 788888899999998887763 55444 4444
Q ss_pred HHHHHhCCCCcc-chHHHHHHhccCCC--C--C-----------HhHHHHHHHHHHHHHHHHHhhCCCCcH-hHHHHHHH
Q 044412 143 VDNYSYSNKFFE-SRRVSRRLFDEMPE--R--K-----------FATWNTMIDAYARLAELLFNKMPAWDI-RSWTTMIT 205 (311)
Q Consensus 143 l~~~~~~g~~~~-a~~~a~~~~~~~~~--~--~-----------~~~~~~li~~~~~~a~~~~~~m~~~~~-~~y~~li~ 205 (311)
..+.+-...+.+ ..+...+++++... | + ...|...+..| +..+...++ .+|+.+-.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~y-------l~~~l~KgvPslF~~lk~ 151 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEY-------LRPQLRKGVPSLFSNLKP 151 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHH-------HHHHHhcCCchHHHHHHH
Confidence 444433321111 11114444443321 1 1 11222222222 222333333 35666666
Q ss_pred HHHhCCChhHHHHHHHHHHhc----C----------CCCCH--HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHh
Q 044412 206 SYSQNKQFREALDAFNKTKKS----G----------TGSDQ--VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~--~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~ 269 (311)
-|......+-..+++...... | -.|+. .++.-+-.-|...|+.+.|... ++
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~-------------Id 218 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY-------------ID 218 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH-------------HH
Confidence 666555555555666555432 1 13444 2455666777788888855544 33
Q ss_pred hcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 270 KLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 270 ~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+-. .|+ +..|-+--+.+-..|++++|.+.++..+..
T Consensus 219 ~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 219 KAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 322 466 567888888999999999999999887653
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.21 Score=41.02 Aligned_cols=162 Identities=11% Similarity=0.000 Sum_probs=112.1
Q ss_pred HhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCChhHHHHHHHHHHHCCCCchHHH
Q 044412 52 KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVH 124 (311)
Q Consensus 52 ~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 124 (311)
.....|+......+-..+ --.|+-+....+..+... + |....+. ..+.|++.+|...|++..+-
T Consensus 59 ~~~~~p~d~~i~~~a~a~-~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-------- 129 (257)
T COG5010 59 AVLRNPEDLSIAKLATAL-YLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-------- 129 (257)
T ss_pred HHhcCcchHHHHHHHHHH-HhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------
Confidence 344455333225555666 667777777777766432 1 1111111 78899999999999988664
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHH
Q 044412 125 GQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMI 204 (311)
Q Consensus 125 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li 204 (311)
-++|...|+.+--+|-+.|++++ |+.-+.+..+ +...+...+|.|-
T Consensus 130 -------~p~d~~~~~~lgaaldq~Gr~~~----Ar~ay~qAl~-----------------------L~~~~p~~~nNlg 175 (257)
T COG5010 130 -------APTDWEAWNLLGAALDQLGRFDE----ARRAYRQALE-----------------------LAPNEPSIANNLG 175 (257)
T ss_pred -------CCCChhhhhHHHHHHHHccChhH----HHHHHHHHHH-----------------------hccCCchhhhhHH
Confidence 37789999999999999999999 5555554221 1112455677777
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
-.|.-.|+.+.|..++..-...+- -|...-..|.-.....|+++.|+++...
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 778888999999999999877542 2566667777788899999988776543
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.59 E-value=0.021 Score=53.38 Aligned_cols=72 Identities=10% Similarity=0.143 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~ 272 (311)
.++--|..|++.|+++.|+++-.+. .|-+.+...|.+-..-.-..|.+.+|++++--.|.++.|.+.+++..
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence 4566799999999999999986654 45666677788877888888999999998888888888888887765
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.58 E-value=0.076 Score=43.55 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=105.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.-.|+-+.+..+....... ..-|....+.+.....+.|++.. |...+.+...++
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~---------------~~~d~~ll~~~gk~~~~~g~~~~----A~~~~rkA~~l~------ 130 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIA---------------YPKDRELLAAQGKNQIRNGNFGE----AVSVLRKAARLA------ 130 (257)
T ss_pred HHhcccccchHHHHhhhhcc---------------CcccHHHHHHHHHHHHHhcchHH----HHHHHHHHhccC------
Confidence 44556666666665554322 34455666678888899999999 777766654432
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
.+|-.+||.+--+|-+.|+.++|..-|.+-.+- .| +...+|.|-..+.-.|+.+.|+.++
T Consensus 131 -----------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 131 -----------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred -----------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 468899999999999999999999999988773 34 3455777777788889999887766
Q ss_pred HhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044412 256 IYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300 (311)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 300 (311)
....... ..|...-+.+.......|++++|.++..
T Consensus 192 l~a~l~~----------~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 192 LPAYLSP----------AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHhCC----------CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 4311111 2366666777777788888888877643
No 113
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=0.2 Score=44.79 Aligned_cols=105 Identities=10% Similarity=0.163 Sum_probs=71.4
Q ss_pred ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCe--eeeec-c--ccCCChhHHHHHHH
Q 044412 39 SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNV--FVYHA-F--SSLRHPLQAIAFYL 111 (311)
Q Consensus 39 ~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~--~~~~~-~--~~~~~~~~a~~~~~ 111 (311)
....++++|+...... ..+...|-..+.+= .++..+..|..+|+.... |.+ .=|.- + -.-|++..|.++|+
T Consensus 88 e~~RARSv~ERALdvd-~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD-YRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHhcc-cccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3444467777766654 45667788888887 888888888888876531 211 11111 1 23467788888888
Q ss_pred HHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhcc
Q 044412 112 YMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165 (311)
Q Consensus 112 ~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~ 165 (311)
...+ +.|+...|++.|+.=.+...++. |+++++.
T Consensus 166 rW~~----------------w~P~eqaW~sfI~fElRykeier----aR~IYer 199 (677)
T KOG1915|consen 166 RWME----------------WEPDEQAWLSFIKFELRYKEIER----ARSIYER 199 (677)
T ss_pred HHHc----------------CCCcHHHHHHHHHHHHHhhHHHH----HHHHHHH
Confidence 7654 68888888888888888888888 5555554
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.53 E-value=0.074 Score=50.54 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=100.0
Q ss_pred cchhHHHHHHHHHhhccCChhHHHHhcccCCC-----------CCeeeeec-----cccCCChhHHHHHHHHHHHCCCCc
Q 044412 57 LDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-----------PNVFVYHA-----FSSLRHPLQAIAFYLYMLRAEVLL 120 (311)
Q Consensus 57 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----------~~~~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~p 120 (311)
-+..+|..+.+.| .+..++|-|.-.+-.|.. .|..--.+ ....|..++|+.+|++-++..
T Consensus 755 kS~~vW~nmA~Mc-VkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D--- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMC-VKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD--- 830 (1416)
T ss_pred hhhHHHHHHHHHh-hhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 3567899999999 999999999998888863 11111111 566788999999998876542
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH----------HHHHHHHH------
Q 044412 121 TTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT----------MIDAYARL------ 184 (311)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~----------li~~~~~~------ 184 (311)
.|=..|-..|++++|.++|+.--.--.+....-|.- -|..|-+.
T Consensus 831 --------------------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 831 --------------------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred --------------------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 233346666778885555443211111111111111 11222221
Q ss_pred -----------HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHH
Q 044412 185 -----------AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 185 -----------a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
.+...+++.+| ..|.-.-.-+-..|+.+.|+.+|..-+. |-++++..|-.|+.++|.+
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHH
Confidence 22222333333 3333333333346888888888887653 5567777888899998888
Q ss_pred HHHhhCChH
Q 044412 254 IQIYCRSLG 262 (311)
Q Consensus 254 ~~~~~~~~~ 262 (311)
+-++.|+..
T Consensus 960 iA~esgd~A 968 (1416)
T KOG3617|consen 960 IAEESGDKA 968 (1416)
T ss_pred HHHhcccHH
Confidence 876644443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.49 E-value=0.034 Score=51.81 Aligned_cols=66 Identities=9% Similarity=-0.048 Sum_probs=43.2
Q ss_pred HhhhhhcCCCCCchh-hhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhccc
Q 044412 10 ITSFKKNSFPTSVSF-IRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85 (311)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 85 (311)
.+.++-...|+.++. ...+.+..++.++|-.+.+..+++. +..|.-+|.+| ...|+..+|..+..+
T Consensus 383 ~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY-~~lg~~~kaeei~~q 449 (777)
T KOG1128|consen 383 LNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCY-LLLGQHGKAEEINRQ 449 (777)
T ss_pred HhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHH-HHhcccchHHHHHHH
Confidence 344454455555554 3467889999999999999777763 34566666666 666666666655533
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.46 E-value=0.021 Score=42.44 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=17.5
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
+..+|..+-..|...|+.++|...|++..+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455556666666666666666555
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.41 E-value=0.063 Score=50.13 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHh-hCC-CCcHhHHHHHHHHHHh
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFN-KMP-AWDIRSWTTMITSYSQ 209 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~-~m~-~~~~~~y~~li~~~~~ 209 (311)
..-..+-..+.+.|-... |..++++.. .|...|..|+.. |..+.. +.. +||...|..+.+....
T Consensus 399 q~q~~laell~slGitks----Al~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKS----ALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchHHH----HHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 333444555666666666 555554422 233333333332 333322 222 4677778777777766
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHH
Q 044412 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVF 268 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~ 268 (311)
..-+++|.++++..... -...++.+ ..+.++++++.+.|+. +++...|-+.|
T Consensus 470 ~s~yEkawElsn~~sar----A~r~~~~~---~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR----AQRSLALL---ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH----HHHhhccc---cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 67778888888775432 00011111 1124555555555554 56666666666
Q ss_pred hhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044412 269 FKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308 (311)
Q Consensus 269 ~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 308 (311)
..-. +|| ...||.+-.+|.+.|+-.+|...+.+-.+-+..
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 5554 565 567999999999999999999888887765543
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.38 E-value=0.026 Score=50.12 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=89.7
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~ 99 (311)
..++...+..-++.+.+..+++.+.+.. |+ ....+.+.+ ...++-.+|.+++++..+.+...+.. +.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~-l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVY-LLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHH-HhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 3467777788888888899999988875 44 445577777 77788888888887765422222222 788
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
.++.+.|+++.++..+. .|+ ..+|..|..+|.+.|+++. |...++.++.
T Consensus 247 k~~~~lAL~iAk~av~l----------------sP~~f~~W~~La~~Yi~~~d~e~----ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL----------------SPSEFETWYQLAECYIQLGDFEN----ALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhcCCHHH----HHHHHhcCcC
Confidence 89999999999998763 555 5699999999999999999 8888887763
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.36 E-value=0.093 Score=42.09 Aligned_cols=96 Identities=9% Similarity=0.103 Sum_probs=74.1
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHH-hccCC--hhhHHHHHHhhCChHHHHHHHhh
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSAC-AHLGA--LDLGRGIQIYCRSLGRSLLVFFK 270 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~-~~~~~--~~~a~~~~~~~~~~~~a~~~~~~ 270 (311)
.|...|..+-..|...|++++|...|++..+. .| +...+..+-.++ ...|+ .++| .+++++
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A-------------~~~l~~ 135 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQT-------------REMIDK 135 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHH-------------HHHHHH
Confidence 47788999999999999999999999998874 45 566666666654 56666 3644 444444
Q ss_pred cC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 271 LR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 271 ~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.. .| ++..+..+-..+...|++++|...|+++.+.
T Consensus 136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 43 23 5678899999999999999999999999764
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.31 E-value=0.23 Score=39.78 Aligned_cols=142 Identities=10% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHH
Q 044412 65 FISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVD 144 (311)
Q Consensus 65 ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~ 144 (311)
-+..| ...|+++.+....+.+..|. +.+...++.++++..++...+.. +.|...|..+-.
T Consensus 22 ~~~~Y-~~~g~~~~v~~~~~~~~~~~----~~~~~~~~~~~~i~~l~~~L~~~---------------P~~~~~w~~Lg~ 81 (198)
T PRK10370 22 CVGSY-LLSPKWQAVRAEYQRLADPL----HQFASQQTPEAQLQALQDKIRAN---------------PQNSEQWALLGE 81 (198)
T ss_pred HHHHH-HHcchHHHHHHHHHHHhCcc----ccccCchhHHHHHHHHHHHHHHC---------------CCCHHHHHHHHH
Confidence 34566 77888887766654433321 11334566677777777765542 566888999999
Q ss_pred HHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHH-HhCCC--hhHHHHHHH
Q 044412 145 NYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSY-SQNKQ--FREALDAFN 221 (311)
Q Consensus 145 ~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~-~~~g~--~~~a~~~~~ 221 (311)
.|...|++++ |...++.....+ ..+...+..+-.++ ...|+ .++|.++++
T Consensus 82 ~~~~~g~~~~----A~~a~~~Al~l~-----------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 82 YYLWRNDYDN----ALLAYRQALQLR-----------------------GENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHCCCHHH----HHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 9999999999 666665433211 12455666666653 45565 478888888
Q ss_pred HHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHH
Q 044412 222 KTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 222 ~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
+..+. .| +...+..+-.++...|++++|...+
T Consensus 135 ~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 135 KALAL--DANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 87764 33 4456666666777777777555444
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.26 E-value=0.16 Score=38.44 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHH----HHHHHhhCCC--CcH----hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 044412 173 TWNTMIDAYARL----AELLFNKMPA--WDI----RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ--VTMATVLS 240 (311)
Q Consensus 173 ~~~~li~~~~~~----a~~~~~~m~~--~~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~ 240 (311)
.|..++..+... +...++.+.. |+. ...-.+-..+...|++++|...|+......-.|+. ...-.|-.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 344555555332 4444555542 222 12222446677889999999999999987623322 23334566
Q ss_pred HHhccCChhhHHHHHHhhCChHHHHHHHhhcCC--CCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 241 ACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE--KNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 241 a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
.+...|+++.|.. .++.... .....+...-+.|.+.|++++|...|+.
T Consensus 94 ~~~~~~~~d~Al~-------------~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALA-------------TLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHH-------------HHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6677777775544 4444332 2334667778889999999999999875
No 122
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.22 E-value=0.13 Score=44.42 Aligned_cols=119 Identities=10% Similarity=0.008 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH----HHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL----AELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~----a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
.+.-|.-+...|+... |..+..+..-|+-.-|-..|.+++.. -.+-|..- ..++.-|-..+..|.+.|...
T Consensus 180 l~~Ti~~li~~~~~k~----A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQ----AEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHHCCCHHH----HHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCCCCChHHHHHHHHHCCCHH
Confidence 3334455555565555 55555554545555555555555544 11111111 234567888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~ 272 (311)
+|..+...+ ++..-+..|.+.|++.+|.+.-...++.+.-..+.+..+
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 888888772 224556778888888888776555555555555544444
No 123
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.022 Score=43.12 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHH
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREA 216 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a 216 (311)
+...++..+...|++++|.+++...+.. +| |...|..+|.+|...|+..+|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~----------------------------dP~~E~~~~~lm~~~~~~g~~~~A 115 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL----------------------------DPYDEEAYRLLMRALAAQGRRAEA 115 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH----------------------------STT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 5566788888999999966666666554 33 678999999999999999999
Q ss_pred HHHHHHHHh-----cCCCCCHHHHH
Q 044412 217 LDAFNKTKK-----SGTGSDQVTMA 236 (311)
Q Consensus 217 ~~~~~~m~~-----~g~~p~~~t~~ 236 (311)
.++|+++.+ -|+.|+..|-.
T Consensus 116 ~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 116 LRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 999999753 59999987743
No 124
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.15 E-value=1.2 Score=41.79 Aligned_cols=119 Identities=9% Similarity=0.011 Sum_probs=68.3
Q ss_pred HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh-----------
Q 044412 185 AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL----------- 250 (311)
Q Consensus 185 a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~----------- 250 (311)
|+.+|++-. .| |...|-..|..=.+.|..+.|..+..+-.+. ++-+...|.--|-...+.+.--.
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 666666443 33 5667888888888888888887766665542 22222233322222222211111
Q ss_pred ------HHHHHHhhCChHHHHHHHhhcC--CCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 251 ------GRGIQIYCRSLGRSLLVFFKLR--EKNL-LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 251 ------a~~~~~~~~~~~~a~~~~~~~~--~p~~-~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+-.+|-.-.+.+.|...|.+-. .||. .+|--+..-+.++|.-++-.+++..-..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1122323556667777777766 3433 5788888888888877777777766543
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.15 E-value=1 Score=41.11 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHh-------------------
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIY------------------- 257 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~------------------- 257 (311)
.+|...|..--+..-+..|..+|.+.++.+..+ ..+.+++++.-+|. ++.+-|-++|+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 367777777777777889999999999988888 77788888886664 677788888887
Q ss_pred --hCChHHHHHHHhhcCCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 258 --CRSLGRSLLVFFKLREK------NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 258 --~~~~~~a~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.++-..+..+|++..+. ....|+.+|+-=..-|+...+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66777788888877632 347899999999999999999888777653
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.8 Score=39.59 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=54.5
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA-TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK 274 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p 274 (311)
|.+-|| +-.+++..|.+.+|+++|-......++ |..+|. .|.++|.+++..+.|+.++-......++
T Consensus 393 D~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~---------- 460 (557)
T KOG3785|consen 393 DDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSER---------- 460 (557)
T ss_pred chhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhH----------
Confidence 444443 567778888888888888776544344 344544 5557777877777555544332222221
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
......+-.-|.+.+.+--|.+.|+.+..
T Consensus 461 -fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 461 -FSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 12233344455566666666666655544
No 127
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.11 E-value=0.051 Score=45.18 Aligned_cols=90 Identities=10% Similarity=0.182 Sum_probs=61.8
Q ss_pred HHHHhccCC--CCCHhHHHHHHHHHHHH-------------HHHHHhhC-CCCcHhHHHHHHHHHHhCCC----------
Q 044412 159 SRRLFDEMP--ERKFATWNTMIDAYARL-------------AELLFNKM-PAWDIRSWTTMITSYSQNKQ---------- 212 (311)
Q Consensus 159 a~~~~~~~~--~~~~~~~~~li~~~~~~-------------a~~~~~~m-~~~~~~~y~~li~~~~~~g~---------- 212 (311)
.+..|...+ ++|-.+|-+.+..+... |.+...+. .++|..+|+.||..+-+...
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 444555444 45556666666665543 22222222 25788888888887766432
Q ss_pred ------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 213 ------FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 213 ------~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
-+-+++++++|..+|+.||..+=-.|++++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 256789999999999999999999999999997754
No 128
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.07 E-value=0.03 Score=41.27 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|+..+-.+++.+|+..|++..|+++++...+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 58999999999999999999999999999765
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.04 E-value=0.044 Score=36.74 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~ 218 (311)
+..+...+...|++++ |...++...... ..+...+..+...+...|++++|.+
T Consensus 3 ~~~~a~~~~~~~~~~~----A~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~a~~ 55 (100)
T cd00189 3 LLNLGNLYYKLGDYDE----ALEYYEKALELD-----------------------PDNADAYYNLAAAYYKLGKYEEALE 55 (100)
T ss_pred HHHHHHHHHHHhcHHH----HHHHHHHHHhcC-----------------------CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888999 555554432211 1234567777788888899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.|....+.+ +.+..++..+...+...|+.+.|...+.
T Consensus 56 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 56 DYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999887753 3344677788888888888887766553
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.99 E-value=0.066 Score=51.28 Aligned_cols=131 Identities=10% Similarity=-0.011 Sum_probs=98.7
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcch-hHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------cc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDC-FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------FS 98 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~ 98 (311)
+..+..+....|+.++++.+++...+. .||. .....+...+ .+.+++++|+...++..+.+..+... +.
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L-~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGV-KRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHH-HHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 568888999999999999999988876 4544 5566677778 99999999999999987543333333 88
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC---CCHhHHH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE---RKFATWN 175 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~---~~~~~~~ 175 (311)
..|++++|..+|++....+ .-+..++.++-.++-+.|+.++ |...|+...+ ++.--|+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~---------------p~~~~~~~~~a~~l~~~G~~~~----A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH---------------PEFENGYVGWAQSLTRRGALWR----ARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HhcchHHHHHHHHHHHhcC---------------CCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhhCcchHHHH
Confidence 9999999999999997642 3347788889999999999999 6665654432 3444444
Q ss_pred HHHH
Q 044412 176 TMID 179 (311)
Q Consensus 176 ~li~ 179 (311)
..+.
T Consensus 227 ~~~~ 230 (694)
T PRK15179 227 RRLV 230 (694)
T ss_pred HHHH
Confidence 4433
No 131
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.95 E-value=0.2 Score=46.48 Aligned_cols=193 Identities=11% Similarity=0.099 Sum_probs=114.4
Q ss_pred HHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHH
Q 044412 47 YATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126 (311)
Q Consensus 47 ~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (311)
.+.+.+.|-.|+...... .| +-.|.+.+|-++|. ++|.-..|+++|.+|+--.. .++
T Consensus 623 L~~~k~rge~P~~iLlA~---~~-Ay~gKF~EAAklFk--------------~~G~enRAlEmyTDlRMFD~-----aQE 679 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLAD---VF-AYQGKFHEAAKLFK--------------RSGHENRALEMYTDLRMFDY-----AQE 679 (1081)
T ss_pred HHHHHhcCCCchHHHHHH---HH-HhhhhHHHHHHHHH--------------HcCchhhHHHHHHHHHHHHH-----HHH
Confidence 346677888888765443 34 55688888888885 45666677777766643210 011
Q ss_pred HHHhc--------------CCCchhHHHHHHHHHHhCCCCccchHHH------HHHhc---cCCCCCHhHHHHHHHHHHH
Q 044412 127 VWKNG--------------FSSPVFVQTAMVDNYSYSNKFFESRRVS------RRLFD---EMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 127 ~~~~g--------------~~~~~~~~~~ll~~~~~~g~~~~a~~~a------~~~~~---~~~~~~~~~~~~li~~~~~ 183 (311)
....| +.-+..-=.+.-.++...|+.++|..+. .-+++ .....+..+.- .+..|.+
T Consensus 680 ~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~-~~a~ylk 758 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL-LCATYLK 758 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH-HHHHHHh
Confidence 11111 1001000022345566778887754441 11111 11111222222 2223333
Q ss_pred H------HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 184 L------AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 184 ~------a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
. |-++|..|.+- -.+++.....+++.+|+.+-+...+ +.||.. ..--+-++...++++|.+.|..
T Consensus 759 ~l~~~gLAaeIF~k~gD~-----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy--~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGDL-----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVY--MPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred hccccchHHHHHHHhccH-----HHHhhheeecccchHhHhhhhhCcc--cccccc--chHHHHhhhhhhHHHHHHHHHH
Confidence 2 88888888742 2456677788999999999888765 355543 2333556788899999999999
Q ss_pred hCChHHHHHHHhhcC
Q 044412 258 CRSLGRSLLVFFKLR 272 (311)
Q Consensus 258 ~~~~~~a~~~~~~~~ 272 (311)
.|+-.+|.++++++.
T Consensus 830 AGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLT 844 (1081)
T ss_pred hcchHHHHHHHHHhh
Confidence 999999999998876
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.89 E-value=0.54 Score=35.88 Aligned_cols=106 Identities=7% Similarity=-0.108 Sum_probs=67.9
Q ss_pred HHHhhCC-CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHhhCChHHH
Q 044412 187 LLFNKMP-AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ-VTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264 (311)
Q Consensus 187 ~~~~~m~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a 264 (311)
.++..+. ..+....-.+-.-+...|++++|..+|+-... +-|.. .-|-.|=-+|-..|++++|...+.....++
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-- 99 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-- 99 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 3344444 33333333444555677899999999888765 34444 344555555666788887766664433333
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|+..+-.+-.++...|+.+.|.+-|+.-+.
T Consensus 100 --------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 100 --------IDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred --------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24677788888888888888888888876543
No 133
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.87 E-value=0.058 Score=45.87 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHH
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a 216 (311)
.+|..++...-+.+.++. |+.+|.+..+.+.. ..++....++|.-+ ..++.+.|
T Consensus 2 ~v~i~~m~~~~r~~g~~~----aR~vF~~a~~~~~~---------------------~~~vy~~~A~~E~~-~~~d~~~A 55 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEA----ARKVFKRARKDKRC---------------------TYHVYVAYALMEYY-CNKDPKRA 55 (280)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCS----------------------THHHHHHHHHHHH-TCS-HHHH
T ss_pred HHHHHHHHHHHHhCChHH----HHHHHHHHHcCCCC---------------------CHHHHHHHHHHHHH-hCCCHHHH
Confidence 467777777777777777 77777664322111 12344555555543 34677889
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHHHHHHHhcCChHHH
Q 044412 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEA 295 (311)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a 295 (311)
.++|+...+. +.-+..-|..-+.-+.+.++.+.|+.+|+.+-..-.. +. -...|...++-=.+.|+.+.+
T Consensus 56 ~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~--------~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 56 RKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPK--------EKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC--------HHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc--------hhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998775 5666777777788888888888777666552111000 11 234788889888899999999
Q ss_pred HHHHHHHHH
Q 044412 296 LGMFDRMTY 304 (311)
Q Consensus 296 ~~~~~~M~~ 304 (311)
..+.+++.+
T Consensus 127 ~~v~~R~~~ 135 (280)
T PF05843_consen 127 RKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888865
No 134
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.86 E-value=0.35 Score=37.53 Aligned_cols=123 Identities=9% Similarity=-0.010 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC--cHhHHHHHHHHHHhCCC
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW--DIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~--~~~~y~~li~~~~~~g~ 212 (311)
....|..+...+...|++++ |...++..... .+.+ ...+|..+-..+...|+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~----A~~~~~~al~l----------------------~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAE----ALQNYYEAMRL----------------------EIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhc----------------------cccchhhHHHHHHHHHHHHHcCC
Confidence 35566777778888999999 55555543210 0111 23478888899999999
Q ss_pred hhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHh-------ccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSD-QVTMATVLSACA-------HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~-------~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~ 284 (311)
+++|+..+++..+. .|+ ..++..+...+. ..|+++.|...+ ++|..+|++....++..+.....
T Consensus 88 ~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~------~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 88 HTKALEYYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF------DQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH------HHHHHHHHHHHHhCcccHHHHHH
Confidence 99999999998764 333 455666666666 666777665443 45666666665555554454444
Q ss_pred HHHhcCC
Q 044412 285 ALAIHGF 291 (311)
Q Consensus 285 ~~~~~g~ 291 (311)
-+...|+
T Consensus 160 ~~~~~~~ 166 (168)
T CHL00033 160 WLKITGR 166 (168)
T ss_pred HHHHhcC
Confidence 4444444
No 135
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.093 Score=46.92 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=22.3
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
|+...++.-++..++....++. .|-.+-..| ....+.++..+.|+...
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y-~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAY-ADENQSEKMWKDFNKAE 387 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHH-hhhhccHHHHHHHHHHH
Confidence 3444444555555544333222 133333445 55556666666665544
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.71 E-value=0.38 Score=47.17 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.++--+-..|-...+|+++..+++...+
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 3444555566666677777777777654
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.97 Score=37.25 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=110.9
Q ss_pred ChhhHHHHHHHHHH---hc-cCcch-hHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-------cccCCChhHH
Q 044412 39 SIKELECVYATIVK---TN-ANLDC-FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-------FSSLRHPLQA 106 (311)
Q Consensus 39 ~~~~~~~l~~~m~~---~g-~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~~~~a 106 (311)
+.+++.+++..+.. +| ..++. ..|..++-+. ...|+.+.|...++++...=.-++.. +--.|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAA-ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAA-LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 55556667766663 34 55555 4566777777 88999999999998876432333333 6677899999
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHH
Q 044412 107 IAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAE 186 (311)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~ 186 (311)
+++|+.+.+.. +.|..+|-.=+...-..|+--+|++-....++...
T Consensus 106 ~e~y~~lL~dd---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------------------- 151 (289)
T KOG3060|consen 106 IEYYESLLEDD---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------------------- 151 (289)
T ss_pred HHHHHHHhccC---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-------------------
Confidence 99999987763 55666666666666666665563333333322211
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhc---cCChhhHHHHH
Q 044412 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ-VTMATVLSACAH---LGALDLGRGIQ 255 (311)
Q Consensus 187 ~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~a~~~---~~~~~~a~~~~ 255 (311)
.|...|.-+-+-|...|++++|.-.++++.-. .|.. .-|..+-..+-. ..+.+.+++.+
T Consensus 152 --------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 152 --------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred --------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 26788999999999999999999999998863 4543 333444443333 33444444443
No 138
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.63 E-value=0.097 Score=46.18 Aligned_cols=101 Identities=9% Similarity=0.085 Sum_probs=74.5
Q ss_pred ccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHH
Q 044412 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTM 177 (311)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~l 177 (311)
...|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|...+.+.++.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~---------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------------ 65 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD---------------PNNAELYADRAQANIKLGNFTEAVADANKAIEL------------ 65 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 36789999999999987642 345677888888999999999944444444332
Q ss_pred HHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044412 178 IDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242 (311)
Q Consensus 178 i~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 242 (311)
...+...|..+-.+|...|++++|+..|++..+ +.|+.......+..|
T Consensus 66 ---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 66 ---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred ---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 112566788888889999999999999999887 457666655555444
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.72 Score=38.92 Aligned_cols=165 Identities=11% Similarity=0.112 Sum_probs=100.9
Q ss_pred ccChhhHHHHHHHHHHhccCc-chhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec-----cccCCChhHHHH
Q 044412 37 CSSIKELECVYATIVKTNANL-DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA-----FSSLRHPLQAIA 108 (311)
Q Consensus 37 ~~~~~~~~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-----~~~~~~~~~a~~ 108 (311)
-.+..++.++...-.+. .| +....+.|-.+| -...++..|-..++++.+ |...-|.. +.+++.+..|++
T Consensus 23 d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCY-Y~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 23 DARYADAIQLLGSELER--SPRSRAGLSLLGYCY-YRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HhhHHHHHHHHHHHHhc--CccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34455554444333332 34 556666666777 888889999999988864 44444444 777888888988
Q ss_pred HHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHH--HHhCCCCccchHHHHHHhccCCC-CCHhHHHHHHHHHH--H
Q 044412 109 FYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN--YSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAYA--R 183 (311)
Q Consensus 109 ~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~li~~~~--~ 183 (311)
+...|.. .|+...-..-+.+ .-..+++.. ++.+.++.+. .+..+.+. .+|. +
T Consensus 100 V~~~~~D-----------------~~~L~~~~lqLqaAIkYse~Dl~g----~rsLveQlp~en~Ad~~in--~gCllyk 156 (459)
T KOG4340|consen 100 VAFLLLD-----------------NPALHSRVLQLQAAIKYSEGDLPG----SRSLVEQLPSENEADGQIN--LGCLLYK 156 (459)
T ss_pred HHHHhcC-----------------CHHHHHHHHHHHHHHhcccccCcc----hHHHHHhccCCCccchhcc--chheeec
Confidence 8888743 2333222222333 234588888 8888888774 32222111 1111 1
Q ss_pred -----HHHHHHhhCCC----CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 184 -----LAELLFNKMPA----WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 184 -----~a~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
.|.+-|+.-.+ .....||.-+-.|. .|+...|+++..++.+.|+
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIERGI 209 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhh
Confidence 14444544332 34668888777664 5899999999999998875
No 140
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.53 E-value=0.4 Score=45.88 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=15.4
Q ss_pred ChhhHHHHHHhhCChHHHHHH
Q 044412 247 ALDLGRGIQIYCRSLGRSLLV 267 (311)
Q Consensus 247 ~~~~a~~~~~~~~~~~~a~~~ 267 (311)
..+.|..++...|.+..|.++
T Consensus 1037 ~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHH
Confidence 777777777777777777665
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.53 E-value=0.029 Score=36.06 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=42.3
Q ss_pred ccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
...|++++|+++|++.... .+-+..++-.+..+|.+.|++++ |..+++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~la~~~~~~g~~~~----A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---------------NPDNPEARLLLAQCYLKQGQYDE----AEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---------------TTTSHHHHHHHHHHHHHTT-HHH----HHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH
Confidence 3578999999999998765 24477888889999999999999 8888887765
No 142
>PLN02789 farnesyltranstransferase
Probab=95.52 E-value=0.52 Score=40.89 Aligned_cols=182 Identities=7% Similarity=-0.057 Sum_probs=95.4
Q ss_pred hccCChhHHHHhcccCCCCCeeeeec-------cccCC-ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPNVFVYHA-------FSSLR-HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM 142 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~l 142 (311)
...+..++|+.+.+++.+.+...|++ +...+ .++++++.++++.+.. +-+..+|+..
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---------------pknyqaW~~R 112 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---------------PKNYQIWHHR 112 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---------------CcchHHhHHH
Confidence 44445555555555544322222222 22223 4677888877776542 3445566655
Q ss_pred HHHHHhCCCC--ccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHH
Q 044412 143 VDNYSYSNKF--FESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAF 220 (311)
Q Consensus 143 l~~~~~~g~~--~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~ 220 (311)
--.+.+.|+. ++ +..+.+.+.+. ...|..+|+.---.+...|+++++++.+
T Consensus 113 ~~~l~~l~~~~~~~----el~~~~kal~~-----------------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 113 RWLAEKLGPDAANK----ELEFTRKILSL-----------------------DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHcCchhhHH----HHHHHHHHHHh-----------------------CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5455555542 33 23333222211 1347788888888888889999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHhhCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhc----C
Q 044412 221 NKTKKSGTGSDQVTMATVLSACAHLG---ALDLGRGIQIYCRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIH----G 290 (311)
Q Consensus 221 ~~m~~~g~~p~~~t~~~li~a~~~~~---~~~~a~~~~~~~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~----g 290 (311)
+++.+.+.. |...|+.....+.+.+ ..+. ..+.......+.. .| |...|+.+-..+... +
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~---------~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA---------MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccc---------cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 999886543 3445554444444332 2210 0112222221211 23 556777776666663 2
Q ss_pred ChHHHHHHHHHHHH
Q 044412 291 FAHEALGMFDRMTY 304 (311)
Q Consensus 291 ~~~~a~~~~~~M~~ 304 (311)
+..+|.+.+.+...
T Consensus 236 ~~~~~~~~~~~~~~ 249 (320)
T PLN02789 236 SDPEVSSVCLEVLS 249 (320)
T ss_pred cchhHHHHHHHhhc
Confidence 33456666555443
No 143
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.52 E-value=1.2 Score=38.51 Aligned_cols=52 Identities=17% Similarity=-0.033 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
+.+..|.-+...|+...|.++-.+.+ -||-.-|-.-|.+++..++|++-+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34445566666677777766666653 36777777777777777777755443
No 144
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.46 E-value=1.8 Score=38.75 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=77.6
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHhccCChhhHHHHHHh------------------
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALDLGRGIQIY------------------ 257 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~a~~~~~~~~~a~~~~~~------------------ 257 (311)
..+|...|...-+..-++.|..+|.+.++.| +.++...++++|.-++. |+...|-.+|+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3467777877777777888888888888888 77888888888886554 666777777776
Q ss_pred ---hCChHHHHHHHhhcC---CCC--chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 258 ---CRSLGRSLLVFFKLR---EKN--LLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 258 ---~~~~~~a~~~~~~~~---~p~--~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.++-..|..+|+.-. +.+ ...|..||+-=..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 666667777777443 223 4578888888888888877766666654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.44 E-value=0.55 Score=35.41 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchh---HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF---VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
.++...+...++.+.... +.+.. ..-.+-..+...|++++|......+.+.-+.++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~---------------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l----- 83 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY---------------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL----- 83 (145)
T ss_pred CCCHHHHHHHHHHHHHHC---------------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-----
Confidence 456666666666665532 22212 2222446788899999944444444333211111
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
-....-.+-..+...|++++|+..++...... +....+...=..+.+.|+.++|+..|+
T Consensus 84 -------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 84 -------------------KPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 01233345677788899999999997754333 334455666677888999998877664
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.43 E-value=0.033 Score=37.67 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
.|++++|+.+|+.+.+..- -.++...+-.+-.+|.+.|++++ |..+++. .+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-------------~~~~~~~~~~la~~~~~~~~y~~----A~~~~~~-~~~~--------- 54 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-------------TNPNSAYLYNLAQCYFQQGKYEE----AIELLQK-LKLD--------- 54 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-------------GTHHHHHHHHHHHHHHHTTHHHH----HHHHHHC-HTHH---------
T ss_pred CccHHHHHHHHHHHHHHCC-------------CChhHHHHHHHHHHHHHCCCHHH----HHHHHHH-hCCC---------
Confidence 5789999999999876420 01244455558899999999999 7777766 2211
Q ss_pred HHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHH
Q 044412 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222 (311)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~ 222 (311)
..+....-.+-.+|.+.|++++|+++|++
T Consensus 55 --------------~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 55 --------------PSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp --------------HCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 11223333446788899999999999875
No 147
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=1.1 Score=43.98 Aligned_cols=235 Identities=9% Similarity=0.047 Sum_probs=133.0
Q ss_pred HhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec------cccCCChhHHH
Q 044412 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA------FSSLRHPLQAI 107 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~~~~~a~ 107 (311)
....+..+..+++.-...+.|.+||... +|... .+ -..+.+.++...|.+.+...-+. +...+..+.+.
T Consensus 488 i~cfAE~Gqf~KiilY~kKvGyTPdymf---lLq~l-~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~T 562 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYAKKVGYTPDYMF---LLQQL-KR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCT 562 (1666)
T ss_pred HHHHHHhcchhHHHHHHHHcCCCccHHH---HHHHH-Hc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhH
Confidence 3444455555677778889999998654 44444 44 57778887777776533221111 44444555555
Q ss_pred HHHHHHHHCCCCch-----------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--
Q 044412 108 AFYLYMLRAEVLLT-----------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-- 168 (311)
Q Consensus 108 ~~~~~m~~~~~~p~-----------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-- 168 (311)
.++-+..+ +-.|+ ++.+.+..++.--. .-+..+-+.|.+.|-... |.+.+.....
T Consensus 563 SFLLdaLK-~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtH-yDra~IAqLCEKAGL~qr----aLehytDl~DIK 636 (1666)
T KOG0985|consen 563 SFLLDALK-LNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTH-YDRAEIAQLCEKAGLLQR----ALEHYTDLYDIK 636 (1666)
T ss_pred HHHHHHhc-CCChhhhhHHHHHHHHHhccchHHHHHHHhcccccc-ccHHHHHHHHHhcchHHH----HHHhcccHHHHH
Confidence 55444432 22333 22222222221111 113444455555555555 4444443221
Q ss_pred CCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 169 RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 169 ~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
+.++. ..+..|+ .+-.|...-.++.+.+.++.|...+++-|..+.--+-.-|...=-.
T Consensus 637 R~vVh----------------th~L~pE------wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~ 694 (1666)
T KOG0985|consen 637 RVVVH----------------THLLNPE------WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGA 694 (1666)
T ss_pred HHHHH----------------hccCCHH------HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence 00000 0011111 1333444457899999999999999999998888887777776666
Q ss_pred hhHHHHHHhhCChHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 249 DLGRGIQIYCRSLGRSLLVFFKLR--EKNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 249 ~~a~~~~~~~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
+...++|+..+..+--.-++..+. ..|+...--.|.+.|+.|++.+..++.++
T Consensus 695 ~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 695 QALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 666666666555444433333333 34555566789999999999998887664
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.39 E-value=0.82 Score=44.05 Aligned_cols=88 Identities=11% Similarity=0.200 Sum_probs=50.5
Q ss_pred hccCChhHHHHhcccCCCC---Ceeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQEP---NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMV 143 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~---~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll 143 (311)
.|.|+.++|..+++....+ |..|..+ |-..++.++|..+|+...+ .-|+......+.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~----------------~~P~eell~~lF 117 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ----------------KYPSEELLYHLF 117 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------hCCcHHHHHHHH
Confidence 5667777777666665421 2222222 5666666666666666543 345566666666
Q ss_pred HHHHhCCCCccchHHHHHHhccCCCCCHhHH
Q 044412 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATW 174 (311)
Q Consensus 144 ~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~ 174 (311)
.+|.|.+++.+-..+|.++++..++.--.-|
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfW 148 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFW 148 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence 6677766666655556666665554433333
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.36 E-value=0.68 Score=39.39 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=46.1
Q ss_pred HHHHHhhCCCCc--HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-----CCCHH-HHHHHHHHHhccCChhhHHHHHH
Q 044412 185 AELLFNKMPAWD--IRSWTTMITSYSQNKQFREALDAFNKTKKSGT-----GSDQV-TMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 185 a~~~~~~m~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
|.++|+.-..+. ...+..+...+.+.|++++|.++|++....-. +++.. .|-..+-++...||.-.|...++
T Consensus 141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666555432 34677888889999999999999999876432 22222 23333335666788887777776
Q ss_pred h
Q 044412 257 Y 257 (311)
Q Consensus 257 ~ 257 (311)
.
T Consensus 221 ~ 221 (282)
T PF14938_consen 221 R 221 (282)
T ss_dssp H
T ss_pred H
Confidence 6
No 150
>PLN02789 farnesyltranstransferase
Probab=95.24 E-value=1.8 Score=37.54 Aligned_cols=119 Identities=8% Similarity=-0.040 Sum_probs=80.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcch-hHHHHHHHHHhhccC-ChhHHHHhcccCCCCCeee---eec----cc
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDC-FLAKQFISFCTSRFH-FIDYTILVFPQMQEPNVFV---YHA----FS 98 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~g-~~~~a~~~~~~m~~~~~~~---~~~----~~ 98 (311)
..|..++...++...+..+...+++.. |+- .+|+.--.++ .+.| .+++++..++++.+.+... |+. +.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL-~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCL-EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHH-HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 366777777888888888888887653 433 3555444455 5666 6789999998876544444 433 33
Q ss_pred cCCC--hhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 99 SLRH--PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 99 ~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
+.+. .++++.+++.+.+.. +-|..+|+..--.+.+.|++++ +.+.++++.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d---------------pkNy~AW~~R~w~l~~l~~~~e----eL~~~~~~I~ 170 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD---------------AKNYHAWSHRQWVLRTLGGWED----ELEYCHQLLE 170 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHhhhHHH----HHHHHHHHHH
Confidence 3343 366788888876642 5568889988889999999999 5555555443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.22 E-value=0.52 Score=36.72 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC--cHhHHHHHHHHHHhCCCh
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW--DIRSWTTMITSYSQNKQF 213 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~--~~~~y~~li~~~~~~g~~ 213 (311)
...+..+-..|...|++++ |...|++.... -+.+ ....|..+...+.+.|++
T Consensus 35 a~~~~~lg~~~~~~g~~~~----A~~~~~~al~~----------------------~~~~~~~~~~~~~la~~~~~~g~~ 88 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAE----ALENYEEALKL----------------------EEDPNDRSYILYNMGIIYASNGEH 88 (172)
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH----------------------hhccchHHHHHHHHHHHHHHcCCH
Confidence 4456777778889999999 65555543210 0111 135788888999999999
Q ss_pred hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHh-hCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 044412 214 REALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIY-CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291 (311)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~-~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (311)
++|...+.+..+. .|+ ...+..+-..+...|+...+..-+.. ....+.|.+++++..+.++..|..++.-+...|+
T Consensus 89 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 89 DKALEYYHQALEL--NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 9999999998874 453 45566666667676664433211111 2223456666665554454445555555544443
No 152
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.17 E-value=1 Score=34.84 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=78.8
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-------HHHHHhhCCCCcHhH
Q 044412 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-------AELLFNKMPAWDIRS 199 (311)
Q Consensus 127 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-------a~~~~~~m~~~~~~~ 199 (311)
+.+.|+.|+...|..+|+.+.+.|++.. ...++..-.-+|.......+-.+... +.+++.++.. .
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~----~ 91 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT----A 91 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----h
Confidence 4456689999999999999999999999 88888777666665544444444332 7788877752 4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
+..+++.+-..|++-+|+++.+..... +......++.|-...+|..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHH
Confidence 556778888899999999999885332 1122245666666666554
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.08 E-value=0.41 Score=37.09 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS--DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK 274 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p 274 (311)
...|..+...+...|++++|+..|++.....-.| ...++..+-..+...|+.++|...++..- .+ ...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al------~~----~~~ 104 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL------ER----NPF 104 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH------Hh----CcC
Confidence 4567777788888999999999999987653222 23578888888999999997777653321 11 122
Q ss_pred CchhHHHHHHHHH-------hcCChHHHHHHHHHH
Q 044412 275 NLLCWNSITEALA-------IHGFAHEALGMFDRM 302 (311)
Q Consensus 275 ~~~~~~~li~~~~-------~~g~~~~a~~~~~~M 302 (311)
...+++.+...+. ..|++++|...+++-
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3345666666666 788888776666654
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.08 E-value=0.51 Score=36.77 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=59.8
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD--QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE 273 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~ 273 (311)
....|..+-..+...|++++|...|++..+.+-.+. ...+..+-..+.+.|+++.|...+.. +.+. .
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~-----~ 102 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQ------ALEL-----N 102 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh-----C
Confidence 345677788888889999999999999887543332 45788888889999999987776533 2221 2
Q ss_pred C-CchhHHHHHHHHHhcCC
Q 044412 274 K-NLLCWNSITEALAIHGF 291 (311)
Q Consensus 274 p-~~~~~~~li~~~~~~g~ 291 (311)
| +...+..+...+...|+
T Consensus 103 p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred cccHHHHHHHHHHHHHcCC
Confidence 3 34556666667777665
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.99 E-value=0.3 Score=43.09 Aligned_cols=87 Identities=10% Similarity=-0.009 Sum_probs=44.5
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~ 286 (311)
+...|++++|+++|++..+.. +-+...|..+-.+|...|+++.|...++. |.++ ...+...|..+-.+|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~------Al~l----~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANK------AIEL----DPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh----CcCCHHHHHHHHHHH
Confidence 334566666666666665531 12344455555556666666644443321 1111 012344555555666
Q ss_pred HhcCChHHHHHHHHHHHH
Q 044412 287 AIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~~ 304 (311)
...|++++|...|++..+
T Consensus 81 ~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 666666666666666553
No 156
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.14 Score=46.53 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=48.5
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
-..+++.|-..|-+.+..++|+..++.-... .+-|..|+.++--.|...|+++.|...|+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4456888888888999999999999997764 355788888888888998888866665543
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.87 E-value=0.12 Score=33.09 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=34.7
Q ss_pred HhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHH
Q 044412 208 SQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
...|++++|+++|++..+. .| +...+..+..+|.+.|++++|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l 48 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELL 48 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578999999999998775 34 6667778889999988888555544
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.86 E-value=0.14 Score=33.90 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCC--Cc-HhHHHHHHHHHHhCCC
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA--WD-IRSWTTMITSYSQNKQ 212 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~--~~-~~~y~~li~~~~~~g~ 212 (311)
..+|+.+-..|...|++++ |...+++ |.++.+.... |+ ..+++.+-..|...|+
T Consensus 5 a~~~~~la~~~~~~~~~~~----A~~~~~~-------------------al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDE----ALDYYEK-------------------ALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHH----HHHHHHH-------------------HHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHH-------------------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 3578888899999999999 7777766 4555545543 23 5678999999999999
Q ss_pred hhHHHHHHHHHH
Q 044412 213 FREALDAFNKTK 224 (311)
Q Consensus 213 ~~~a~~~~~~m~ 224 (311)
+++|++++++-.
T Consensus 62 ~~~A~~~~~~al 73 (78)
T PF13424_consen 62 YEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.85 E-value=0.13 Score=34.08 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 233 VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 233 ~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.+|+.+-..|...|++++|...++ .|.++.+... .|+ ..+++.+-..|...|++++|.+++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~------~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYE------KALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888888999999999988774 4555544443 233 5689999999999999999999998754
No 160
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.76 E-value=1.2 Score=40.04 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=75.4
Q ss_pred HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhCC
Q 044412 185 AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIYCRS 260 (311)
Q Consensus 185 a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~ 260 (311)
|+..++.+. .| |...+....+-+...++..+|.+.++.+.. ..|+ ....-.+-.++.+.|+..+|.
T Consensus 325 A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai-------- 394 (484)
T COG4783 325 ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAI-------- 394 (484)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHH--------
Confidence 666676664 35 455566667889999999999999999987 4677 445556778888888888544
Q ss_pred hHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 261 LGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 261 ~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
+.++... .-|+..|+.|-.+|...|+..++..-..++
T Consensus 395 -----~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 -----RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred -----HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 4444433 347789999999999988888776665554
No 161
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.57 E-value=2.2 Score=40.66 Aligned_cols=196 Identities=10% Similarity=-0.010 Sum_probs=128.9
Q ss_pred HHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCC---Ceeeeec----cccCCChhHHHHHHHHHHHCC
Q 044412 45 CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP---NVFVYHA----FSSLRHPLQAIAFYLYMLRAE 117 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~----~~~~~~~~~a~~~~~~m~~~~ 117 (311)
.++.++....+..|..+|..+.-+. .++|+++.+-+.|++...- ....|+. +.-.|....|..++++-....
T Consensus 309 ~~~~k~r~~~~qnd~ai~d~Lt~al-~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 309 LLLRKLRLKKFQNDAAIFDHLTFAL-SRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 3445555666788999999999999 9999999999999887531 1222222 777888889999987753321
Q ss_pred CCchHHHHHHHHhcCCCchhHHHHHHH--HHHhCCCCccchHHHHHHhccC--CCCC--HhHHHHHHHHHHHH-------
Q 044412 118 VLLTTVHGQVWKNGFSSPVFVQTAMVD--NYSYSNKFFESRRVSRRLFDEM--PERK--FATWNTMIDAYARL------- 184 (311)
Q Consensus 118 ~~p~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~a~~~~~~~--~~~~--~~~~~~li~~~~~~------- 184 (311)
-.|+..+---+.. ++-+.+..+++...|.+..+.. .... ...|-.+=-+|...
T Consensus 388 --------------~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 388 --------------EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred --------------cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 1233222222222 2344577888888888887733 2111 12333333333321
Q ss_pred ---------HHHHHhhCC-----CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 185 ---------AELLFNKMP-----AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 185 ---------a~~~~~~m~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
+.+.+++-. +|++..|-++= |+-.++++.|.+..++..+.+-.-+...|..|.-.+.-.+++..
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 444444432 45555555443 45667899999999999998778888899988888999999999
Q ss_pred HHHHHHh
Q 044412 251 GRGIQIY 257 (311)
Q Consensus 251 a~~~~~~ 257 (311)
|+.+.+.
T Consensus 532 Al~vvd~ 538 (799)
T KOG4162|consen 532 ALDVVDA 538 (799)
T ss_pred HHHHHHH
Confidence 9887643
No 162
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.56 E-value=0.5 Score=34.81 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=65.2
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHhccCC----hhhHHHHHHhhCChHHHHHHH
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV---TMATVLSACAHLGA----LDLGRGIQIYCRSLGRSLLVF 268 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~a~~~~~~----~~~a~~~~~~~~~~~~a~~~~ 268 (311)
+..-||-+|=.....-+.+-..++++..-+ -.|.. -...++.+|++.|. ++.|...+-..|+.+.-.++.
T Consensus 33 ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~ 109 (161)
T PF09205_consen 33 NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIY 109 (161)
T ss_dssp -HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 444555555555454555555555555432 22222 23345566665553 345555555566666777777
Q ss_pred hhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044412 269 FKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308 (311)
Q Consensus 269 ~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 308 (311)
.++. ++++...-.+-.||.+-|+..++.+++.+.-+.|++
T Consensus 110 ~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 110 NELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 7654 688888889999999999999999999999998874
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.43 E-value=0.73 Score=32.83 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCC--CCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
++-.+...+.+.|++++ |...+..... |+. ......+..+...+.+.|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~ 57 (119)
T TIGR02795 4 AYYDAALLVLKAGDYAD----AIQAFQAFLKKYPKS----------------------TYAPNAHYWLGEAYYAQGKYAD 57 (119)
T ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHHHCCCc----------------------cccHHHHHHHHHHHHhhccHHH
Confidence 45667778888999999 5555554322 110 0013455667888999999999
Q ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 216 ALDAFNKTKKSG--TGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 216 a~~~~~~m~~~g--~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
|...|++..... -......+..+-.++...|+.+.|...+
T Consensus 58 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 58 AAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999988642 1112456677777788888888665554
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.99 E-value=0.17 Score=38.18 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=31.3
Q ss_pred HHHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCC
Q 044412 263 RSLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMT-----YENVRPN 310 (311)
Q Consensus 263 ~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~-----~~g~~P~ 310 (311)
.|.+...... .| |-..|-.+|.+|...|+..+|.+.|+++. +-|+.|+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 4444444433 34 56689999999999999999999999885 3488886
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.77 E-value=0.64 Score=33.90 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=58.8
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC---c-hh
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSD--QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN---L-LC 278 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~---~-~~ 278 (311)
.++-..|+.++|+.+|++-...|.... ...+-.+-+++...|++++|..+++..- .+ .|+ . ..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~---------~~--~p~~~~~~~l 77 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL---------EE--FPDDELNAAL 77 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HH--CCCccccHHH
Confidence 455667999999999999999887765 3356667778888888887766653310 11 243 1 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044412 279 WNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
...+-.++...|+.++|..++-..
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222334777889999998876543
No 166
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.77 E-value=1.5 Score=36.89 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHHhhCC--CCcHhHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh--HHHHH
Q 044412 185 AELLFNKMP--AWDIRSWTTMITSYSQN-----KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL--GRGIQ 255 (311)
Q Consensus 185 a~~~~~~m~--~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~--a~~~~ 255 (311)
.++.|...+ ++|-.+|-+++.-|... +.++=...-++.|.+-|++-|..+|+.||+.+=+..-.-. -.++|
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566555 56888888888888764 5567777788899999999999999999999887654321 11222
Q ss_pred Hh-hCChHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCh
Q 044412 256 IY-CRSLGRSLLVFFKLR----EKNLLCWNSITEALAIHGFA 292 (311)
Q Consensus 256 ~~-~~~~~~a~~~~~~~~----~p~~~~~~~li~~~~~~g~~ 292 (311)
-+ -..-.-+..++++|+ -||-.+-.+|+.++.+.+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22 445556889999998 79999999999999998865
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.51 E-value=5.5 Score=35.84 Aligned_cols=259 Identities=10% Similarity=0.051 Sum_probs=148.3
Q ss_pred HHhhccChhhHHHHHHHHHHhccCc----c-hhHHHHHHHHHhhccCChhHHHHhcccCCCCCeee-e----ec--cccC
Q 044412 33 QLKKCSSIKELECVYATIVKTNANL----D-CFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV-Y----HA--FSSL 100 (311)
Q Consensus 33 ~l~~~~~~~~~~~l~~~m~~~g~~p----~-~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~--~~~~ 100 (311)
+|+..++..+++.+|..+.+.--.. . ...-+.+|++| . ..+++.....+.+..+....+ | .. +.+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-f-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-F-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-H-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 4667788888888888877653211 1 23456788887 3 345666655555554322211 1 11 7788
Q ss_pred CChhHHHHHHHHHHHC--CCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC----CCHhHH
Q 044412 101 RHPLQAIAFYLYMLRA--EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE----RKFATW 174 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~--~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~----~~~~~~ 174 (311)
+.+.+|++.+....++ +.+|.= .+.-. ....+|...=+...+++...|++++++.+..+++..+.+ -++.+|
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~-Ld~ni-~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPW-LDTNI-QQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccch-hhhhH-HHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 9999999999888765 433320 00000 002344445567788999999999977776666666655 577899
Q ss_pred HHHHHHHHHH-HHHHHhhCCCCcHhHHHHHHHHHHhCC-------------------------------ChhHHHHHHHH
Q 044412 175 NTMIDAYARL-AELLFNKMPAWDIRSWTTMITSYSQNK-------------------------------QFREALDAFNK 222 (311)
Q Consensus 175 ~~li~~~~~~-a~~~~~~m~~~~~~~y~~li~~~~~~g-------------------------------~~~~a~~~~~~ 222 (311)
|.++-.+++. -.++-+.+...=..-|--||..|-+.- +..--..++..
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 9988888886 333333332211112223333332211 11111122222
Q ss_pred HHhcCCCCCHHH-HHHHHHHHhccCChhhHHHHHHhhCChHHHHHHH--hhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044412 223 TKKSGTGSDQVT-MATVLSACAHLGALDLGRGIQIYCRSLGRSLLVF--FKLREKNLLCWNSITEALAIHGFAHEALGMF 299 (311)
Q Consensus 223 m~~~g~~p~~~t-~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 299 (311)
-...-+.|+-.. ...|+..+.. +.+++.++. ++...+ +.+.+.=+.+|..++....+.++..+|..++
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c-------e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC-------EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 233345665443 3455555555 555555554 333222 1222445678999999999999999998888
Q ss_pred HHHHH
Q 044412 300 DRMTY 304 (311)
Q Consensus 300 ~~M~~ 304 (311)
.-+.-
T Consensus 322 ~lL~~ 326 (549)
T PF07079_consen 322 ALLKI 326 (549)
T ss_pred HHHHh
Confidence 76653
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.44 E-value=0.35 Score=30.60 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=39.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
-..+...|++++|.+.|++..+.. | +...+..+-.++...|++++|...++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778899999999999998865 5 56677788888889999997776654
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.38 E-value=0.88 Score=38.32 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=77.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
+.+++++++|++.|.+-.. +.| |.+-|..--.+|++.|..+.|..=++..+..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~----------------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---------- 144 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE----------------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---------- 144 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh----------------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----------
Confidence 6788999999999998765 444 5666777778899999999944444443332
Q ss_pred HHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044412 176 TMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 242 (311)
+| -..+|..|=.+|...|++++|++.|++-+. +.|+-.+|-.=|+.-
T Consensus 145 ------------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 145 ------------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred ------------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 22 367899999999999999999999998775 789988887655544
No 170
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=1 Score=41.52 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=58.9
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh--------------------hCChHHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------CRSLGRS 264 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~--------------------~~~~~~a 264 (311)
+-+.+.|++++|......+...+ +-|...+..=+=+....+.+++|..+.+. .+++++|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 33444555555555555555433 22233344444445555555555544443 4455566
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 265 LLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
...++...+-|..+-..=-.-+.+.|++++|+++|..+.+.+.
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6666644444544555555667889999999999999976543
No 171
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.30 E-value=1.4 Score=39.66 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=69.1
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhc
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ----VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~ 271 (311)
+...|+.+-.+|...|++++|+..|++-.+ +.|+. .+|..+-.+|...|+.++|...++..-... ...|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhHHHH
Confidence 567899999999999999999999999776 46774 468999999999999999988876632221 1223222
Q ss_pred C-CCCc------hhHHHHHHHHHhcCC
Q 044412 272 R-EKNL------LCWNSITEALAIHGF 291 (311)
Q Consensus 272 ~-~p~~------~~~~~li~~~~~~g~ 291 (311)
. .|+. ..|..++..+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2 4443 367888888888775
No 172
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.25 E-value=0.95 Score=41.46 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=90.9
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHH
Q 044412 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMI 204 (311)
Q Consensus 126 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li 204 (311)
.....+..+|+.++..|=-.|--.|.+++ |...|+.... .+| |...||-|=
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdr----aiDcf~~AL~------------------------v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDR----AVDCFEAALQ------------------------VKPNDYLLWNRLG 471 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHH----HHHHHHHHHh------------------------cCCchHHHHHHhh
Confidence 33444544566666666667777788888 6666665332 133 678899999
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC------CCCc
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQV--TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNL 276 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~------~p~~ 276 (311)
-.++...+.++|+.-|.+-++ ++|+-+ -||.-| +|...|.+++|...|- .|..+-.+-. .++-
T Consensus 472 AtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL------~AL~mq~ks~~~~~~~~~se 542 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLL------EALSMQRKSRNHNKAPMASE 542 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHH------HHHHhhhcccccccCCcchH
Confidence 999999999999999999887 577643 355544 5889999998866542 3333333311 1233
Q ss_pred hhHHHHHHHHHhcCChHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGM 298 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~ 298 (311)
..|.+|=.++.-.++.+.+...
T Consensus 543 ~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 543 NIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHHHHcCCchHHHHh
Confidence 5788887777777777755443
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.97 E-value=4.8 Score=38.22 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=39.3
Q ss_pred CcchhHHHHHHHHHhhccCChhHHHHhcccCCC-CCe------eeeec--------cccCCChhHHHHHHHHHHHCC
Q 044412 56 NLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-PNV------FVYHA--------FSSLRHPLQAIAFYLYMLRAE 117 (311)
Q Consensus 56 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-~~~------~~~~~--------~~~~~~~~~a~~~~~~m~~~~ 117 (311)
.|.+..|..+.... .+.-.++-|...|-.... +.+ .+..+ -+--|.+++|.++|-+|-++.
T Consensus 689 nPHprLWrllAe~A-l~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYA-LFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHH-HHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 58888998888776 777777878777755432 111 11111 334577888888888776553
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.88 E-value=0.51 Score=34.39 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=73.6
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcch--hHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec--------
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDC--FLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA-------- 96 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-------- 96 (311)
....++...|+..++..+|+.....|+..+. ..+-.+-+.+ ...|+.++|..+|++... |+......
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastl-r~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTL-RNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 4566788899999999999999999987653 3555566778 899999999999987653 44221111
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY 148 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 148 (311)
+...|+.++|++.+-... .++..-|.--|..|..
T Consensus 85 L~~~gr~~eAl~~~l~~l------------------a~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL------------------AETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 778899999998886653 3444467777766653
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.74 E-value=1.9 Score=36.24 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC-
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ----VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~- 272 (311)
..|+.-+.-+.+.|++++|+..|+.+.+. .|+. ..+-.+-.+|...|+++.|... |+.+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~-------------f~~vv~ 208 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYY-------------FASVVK 208 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHH
Confidence 45777666667779999999999999874 3543 4666777888888888855544 44443
Q ss_pred -CCC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 273 -EKN----LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 273 -~p~----~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
-|+ ...+-.+...+...|+.++|..+|++..+.
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 132 233444556677899999999999988764
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.22 E-value=0.73 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=47.3
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHH
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG-ALDLGRGIQI 256 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~-~~~~a~~~~~ 256 (311)
+..+|..+-..+...|++++|+..|++..+.. +-+...|..+-.++...| ++++|...++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45678888889999999999999999998853 224567788888888888 6887766553
No 177
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.15 E-value=14 Score=37.05 Aligned_cols=257 Identities=9% Similarity=-0.039 Sum_probs=136.1
Q ss_pred HHHHhhccChhhHHHHHHHHHH----hccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC-------CCee--eeec-
Q 044412 31 ANQLKKCSSIKELECVYATIVK----TNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-------PNVF--VYHA- 96 (311)
Q Consensus 31 ~~~l~~~~~~~~~~~l~~~m~~----~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-------~~~~--~~~~- 96 (311)
..+....|++..+...++...+ .....-....+.+-..+ ...|+++.|...+++... +... +...
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH-HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 3444566777777555554432 22222233455666667 788999999888877642 1111 1111
Q ss_pred ---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCC--C-chhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--
Q 044412 97 ---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS--S-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-- 168 (311)
Q Consensus 97 ---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-- 168 (311)
+...|++++|...+++.... ....|.. + ....+..+-..+...|++++|...+.+.......
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~----------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQL----------IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH----------HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 67789999999998876542 1122221 1 2233445555677779999955554444332221
Q ss_pred CCHh--HHHHHHHHHHHH-----HHHHHhhCC----CC-cHhHH-----HHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 044412 169 RKFA--TWNTMIDAYARL-----AELLFNKMP----AW-DIRSW-----TTMITSYSQNKQFREALDAFNKTKKSGTGSD 231 (311)
Q Consensus 169 ~~~~--~~~~li~~~~~~-----a~~~~~~m~----~~-~~~~y-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 231 (311)
+... .+..+-..+... |.+.++... .. ....+ ...+..+...|+.+.|.+.+...........
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 1111 111111111111 444333331 11 11111 1122444557888888888777554221111
Q ss_pred H---HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 232 Q---VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 232 ~---~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
. ..+..+..++...|+.++|...+.. +....+....+ ...+...+-.++.+.|+.++|...+.+..+
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~------al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEE------LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1134566667778888887776543 22222222211 124566677788899999999999888764
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.82 E-value=7.3 Score=33.09 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHhhCChHHHHHHHhhcCCCC--
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL-GALDLGRGIQIYCRSLGRSLLVFFKLREKN-- 275 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~-~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~-- 275 (311)
.|.-.+..|...|++..|-+++.++ -..|-.. |+++.|...+. .|..+|+.-..+.
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~------~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQ------KAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHH------HHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHH------HHHHHHHHCCChhhH
Confidence 3555555555555555555555444 3446565 77777766653 4555554444222
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..++.-+...+.+.|++++|.++|++....
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346777888899999999999999988654
No 179
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.78 E-value=15 Score=36.64 Aligned_cols=143 Identities=12% Similarity=0.075 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+-.+-.+|-+.|+.++|..+..++++.- ..|....|.+-..|... .+ +.-...+.-.+..|...+++.
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~------dL-~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE------DK-EKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHhhhcch
Confidence 33455666677777777777333333333322 12333333333333321 00 001122333344466666777
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHhc----cCChhhHHHHHHh---hCChHHHHHHHhhcC---CCCchhHHHHH
Q 044412 215 EALDAFNKTKKSGTGSD-QVTMATVLSACAH----LGALDLGRGIQIY---CRSLGRSLLVFFKLR---EKNLLCWNSIT 283 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~----~~~~~~a~~~~~~---~~~~~~a~~~~~~~~---~p~~~~~~~li 283 (311)
+++++|.++... .|+ ...|-.+++...+ ..-.+....+++. ..+.+++..+++.+. ..|.....-++
T Consensus 187 ~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 187 GIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 777777776653 222 2222222222222 1122222233332 334446666666554 23445555566
Q ss_pred HHHH
Q 044412 284 EALA 287 (311)
Q Consensus 284 ~~~~ 287 (311)
.+|.
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 6655
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.77 E-value=1.1 Score=37.75 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=61.7
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSITE 284 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~li~ 284 (311)
..+.+++++|+..|.+-++ +.| |.+-|..=-.+|++.|..+.|.+-.+ .|..+ .| -..+|..|=.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce------~Al~i-----Dp~yskay~RLG~ 157 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCE------SALSI-----DPHYSKAYGRLGL 157 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHH------HHHhc-----ChHHHHHHHHHHH
Confidence 4456889999999999887 455 45566677788999998887765322 22221 22 2468899999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 044412 285 ALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 285 ~~~~~g~~~~a~~~~~~M~~ 304 (311)
+|...|++++|.+-|++-.+
T Consensus 158 A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHccCcHHHHHHHHHhhhc
Confidence 99999999999988887654
No 181
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.74 E-value=4.6 Score=31.27 Aligned_cols=115 Identities=13% Similarity=0.011 Sum_probs=73.7
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH---------------HHHHHHHHhccC-Chhh
Q 044412 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT---------------MATVLSACAHLG-ALDL 250 (311)
Q Consensus 187 ~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---------------~~~li~a~~~~~-~~~~ 250 (311)
.+...-..|+...|..+|+.+.+.|++.. +..+.+.++-||... +-.-++.+.+.+ ..+.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~ 94 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEE 94 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHH
Confidence 34444456777789999999999987554 455555565555443 333444555555 5555
Q ss_pred HHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 251 a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..+++-..|++-+|.++.+...+-+......++++..+.++...-..+++-..++
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5566666777788888877765555555567778887777776655555555443
No 182
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.67 E-value=7.2 Score=37.35 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=113.8
Q ss_pred cccCCChhHHHHHHHHHHHCCCCch-----------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhcc
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLT-----------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDE 165 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~ 165 (311)
|...++.+++ .|-.+...-..|. -...++....+..+..+|..|--+..++|+++. +.+.|++
T Consensus 275 f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~----lae~fE~ 348 (799)
T KOG4162|consen 275 FLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEV----LAEQFEQ 348 (799)
T ss_pred cCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 6677777776 3333333333333 223334445577899999999999999999999 8888877
Q ss_pred CCCC---CHhHHHHHHHHHHHH-----HHHHHhhCC--C--CcHhHHHHHHHHHHh--CCChhHHHHHHHHHHhc--C--
Q 044412 166 MPER---KFATWNTMIDAYARL-----AELLFNKMP--A--WDIRSWTTMITSYSQ--NKQFREALDAFNKTKKS--G-- 227 (311)
Q Consensus 166 ~~~~---~~~~~~~li~~~~~~-----a~~~~~~m~--~--~~~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~--g-- 227 (311)
-..- ....|+.+-..|..+ |..+++.-. . |+..+---|+...|- .|..++++++-.+.... |
T Consensus 349 ~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~ 428 (799)
T KOG4162|consen 349 ALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR 428 (799)
T ss_pred HhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh
Confidence 5542 223455555555444 777776543 2 443443334433332 37788888887776651 1
Q ss_pred --CCCCHHHHHHHHHHHh-ccCCh--------hhHHHHHHh---------------------hCChHHHHHHHhhcC---
Q 044412 228 --TGSDQVTMATVLSACA-HLGAL--------DLGRGIQIY---------------------CRSLGRSLLVFFKLR--- 272 (311)
Q Consensus 228 --~~p~~~t~~~li~a~~-~~~~~--------~~a~~~~~~---------------------~~~~~~a~~~~~~~~--- 272 (311)
+.|-..-+--+-.++. +.-.. .++.+.++. .+++..|.+..++..
T Consensus 429 ~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 429 SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 2332222222211111 11111 111111111 556666655544432
Q ss_pred -CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 273 -EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 273 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+-+...|..|.-.+...+++.+|+.+.+.-.
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4567788888888888888888888877643
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.56 E-value=15 Score=36.02 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHHhCCCCcc
Q 044412 135 PVFVQTAMVDNYSYSNKFFE 154 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~ 154 (311)
|..|...+-.+|-..|..|+
T Consensus 76 D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred chHHHHHHHHHHHHHhhhhH
Confidence 44555555555555555555
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.54 E-value=13 Score=35.25 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHh-------------hCChHHHHHHHhhcC--CCCch-----------hHHHHHHHH
Q 044412 233 VTMATVLSACAHLGALDLGRGIQIY-------------CRSLGRSLLVFFKLR--EKNLL-----------CWNSITEAL 286 (311)
Q Consensus 233 ~t~~~li~a~~~~~~~~~a~~~~~~-------------~~~~~~a~~~~~~~~--~p~~~-----------~~~~li~~~ 286 (311)
.+...+-.-+.+...+-.|-++|.. .++..+|.++-++.+ .||+. -|.--=.+|
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 3444443334444445555555554 666677777777777 46653 245556789
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 044412 287 AIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~~~ 305 (311)
.++|+-.||..+++++..-
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 9999999999999988643
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=9.2 Score=33.39 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=94.6
Q ss_pred HHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH--------------HHHHHhhCCCC-----cHhHHH
Q 044412 141 AMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL--------------AELLFNKMPAW-----DIRSWT 201 (311)
Q Consensus 141 ~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~--------------a~~~~~~m~~~-----~~~~y~ 201 (311)
.|+--|.+.|++.+ |..+.++.... ..|-.++++.... |...|+-..+. ++.--.
T Consensus 290 NL~iYyL~q~dVqe----A~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQE----AISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hheeeecccccHHH----HHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 34556788888999 77766665432 2344555554432 77777665532 233345
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNS 281 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~ 281 (311)
+|-+.+.-..++++++-++..+++-=..-|.+-|| +.+|.+-.|+..+|+++|-....++. .|..+|-.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i----------kn~~~Y~s 432 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI----------KNKILYKS 432 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh----------hhhHHHHH
Confidence 66666667778999999998887754444555555 57888888988877666644443333 45566654
Q ss_pred -HHHHHHhcCChHHHHHHHHHH
Q 044412 282 -ITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 282 -li~~~~~~g~~~~a~~~~~~M 302 (311)
|-++|.++|.++.|.+++-+|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhc
Confidence 556888999999988877655
No 186
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.23 E-value=13 Score=34.95 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchh
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV-TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLC 278 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~ 278 (311)
+-.++..|-+.|+++.|..+++.-..+ .|+.. -|..=-+.+...|+++.|-.++++...++.+.+.++
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN--------- 442 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN--------- 442 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH---------
Confidence 344666677778888888887776643 55543 344444666777777777666666555555433322
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 279 WNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
.-=..-..++.+.++|.++.....+.|
T Consensus 443 -sKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 443 -SKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred -HHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 122223334566666666655554444
No 187
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.22 E-value=0.16 Score=38.15 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=65.6
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR-- 272 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~-- 272 (311)
.+....|.++..|++.++.++..++++. .+..-...++..|.+.|.++.+.-++...|+.++|.++...+.
T Consensus 40 ~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~ 112 (143)
T PF00637_consen 40 NNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDY 112 (143)
T ss_dssp -SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCS
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccH
Confidence 3577888999999999888888888872 2223335667778888888888888888888887766533322
Q ss_pred ---------CCCchhHHHHHHHHHhcCCh
Q 044412 273 ---------EKNLLCWNSITEALAIHGFA 292 (311)
Q Consensus 273 ---------~p~~~~~~~li~~~~~~g~~ 292 (311)
.++...|..+++.|...+..
T Consensus 113 ~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 113 EEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp CCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 25678888888888776653
No 188
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.20 E-value=18 Score=36.34 Aligned_cols=214 Identities=9% Similarity=-0.013 Sum_probs=112.3
Q ss_pred HHHhhccCChhHHHHhcccCCC--CCeeee------ec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCC-
Q 044412 67 SFCTSRFHFIDYTILVFPQMQE--PNVFVY------HA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS- 133 (311)
Q Consensus 67 ~~~~~~~g~~~~a~~~~~~m~~--~~~~~~------~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~- 133 (311)
..+ ...|+++.|...+++..+ +....+ +. +...|++++|...+++..... ...|-.
T Consensus 460 ~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~----------~~~g~~~ 528 (903)
T PRK04841 460 QVA-INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA----------RQHDVYH 528 (903)
T ss_pred HHH-HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------hhhcchH
Confidence 444 678899999888876432 111111 11 667899999999998875421 111111
Q ss_pred CchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC---CC----HhHHHHHHHHHHHH-----HHHHHhhC-------CC
Q 044412 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE---RK----FATWNTMIDAYARL-----AELLFNKM-------PA 194 (311)
Q Consensus 134 ~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~---~~----~~~~~~li~~~~~~-----a~~~~~~m-------~~ 194 (311)
+....+..+-..+...|++++|.+.+.+....... ++ ...+..+-..+... |...+.+. ..
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 11234555666788899999966554444332221 11 11121111111111 33333332 11
Q ss_pred C-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHH-----HHHHHHHhccCChhhHHHHHHhhCChHHHHHH
Q 044412 195 W-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG-SDQVTM-----ATVLSACAHLGALDLGRGIQIYCRSLGRSLLV 267 (311)
Q Consensus 195 ~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~-----~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~ 267 (311)
+ ....+..+-..+...|+.++|.+.+.+.....-. .....+ ...+..+...|+.+.|...+
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l------------ 676 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWL------------ 676 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 1 1233444555667789999999888887542110 111111 11123334456666555443
Q ss_pred HhhcCCCC---c----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 268 FFKLREKN---L----LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 268 ~~~~~~p~---~----~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.....+. . ..+..+..++...|+.++|..++++...
T Consensus 677 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 677 -RQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred -HhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222111 1 1245667788899999999999888654
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.06 E-value=0.39 Score=30.37 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 262 GRSLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 262 ~~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+.|.+.|+... .| +...+..+-..+...|++++|..+|++..+.
T Consensus 14 ~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 14 DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35555555555 23 4668888899999999999999999999763
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.61 E-value=8.8 Score=31.84 Aligned_cols=178 Identities=10% Similarity=0.037 Sum_probs=101.7
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCch-hHH---HHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV-FVQ---TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~-~~~---~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+...|++++|.+.|+++... -|+. ..- -.+..+|-+.++.++|....+++.+.-+...-.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~----------------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR----------------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 66789999999999999764 3332 222 345678899999999666666666665654445
Q ss_pred HHHHHHHHHHHH--HHHHHhhCC-----CCc-------HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 173 TWNTMIDAYARL--AELLFNKMP-----AWD-------IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 173 ~~~~li~~~~~~--a~~~~~~m~-----~~~-------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
.|.....+.+.. ....|.... ..| ...+..+|+-|-.+.-..+|...+..+... .-..-+ .+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~i 181 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SV 181 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HH
Confidence 555555555432 222222211 111 134566666666666666666555544321 000111 22
Q ss_pred HHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 239 i~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
-.-|.+.|.+..|.. ....+.+.-+ .........++.+|...|..++|..+.....
T Consensus 182 a~~Y~~~~~y~AA~~---------r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVN---------RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHH---------HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 333555555553322 2233333333 2233566788899999999999988776554
No 191
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.45 E-value=5.2 Score=29.74 Aligned_cols=47 Identities=6% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~ 247 (311)
...+|..+-..+.+.....+++.+...|. .+....+.++..|++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~ 56 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP 56 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH
Confidence 44667777777888888888888887763 677788888888887543
No 192
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.29 E-value=9.1 Score=35.29 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCCCC-----eeeeec---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPN-----VFVYHA---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
-+|-.+|+.. .|...++.|..+|.+..+-. +...++ |...++.+-|.++|+.=.+.
T Consensus 367 Lv~~~~mn~i-rR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk--------------- 430 (656)
T KOG1914|consen 367 LVYCQYMNFI-RRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK--------------- 430 (656)
T ss_pred eehhHHHHHH-HHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh---------------
Confidence 4566667776 77777777777776665321 222222 55566777777777653322
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCC
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g 211 (311)
+.-++.--...++-+...|+=.. ++.+|++...... -.+.....|..+|+-=..-|
T Consensus 431 f~d~p~yv~~YldfL~~lNdd~N----~R~LFEr~l~s~l--------------------~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 431 FGDSPEYVLKYLDFLSHLNDDNN----ARALFERVLTSVL--------------------SADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred cCCChHHHHHHHHHHHHhCcchh----HHHHHHHHHhccC--------------------ChhhhHHHHHHHHHHHHhcc
Confidence 22233334556667777777777 5555555332210 00123456666666666667
Q ss_pred ChhHHHHHHHHHHh
Q 044412 212 QFREALDAFNKTKK 225 (311)
Q Consensus 212 ~~~~a~~~~~~m~~ 225 (311)
++..+.++=+++..
T Consensus 487 dL~si~~lekR~~~ 500 (656)
T KOG1914|consen 487 DLNSILKLEKRRFT 500 (656)
T ss_pred cHHHHHHHHHHHHH
Confidence 77766666665543
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=9.9 Score=31.82 Aligned_cols=205 Identities=6% Similarity=0.015 Sum_probs=102.0
Q ss_pred HHHHHHhhccChhhH-HHHHHHHHHhccCc--chhHHHHHHHHHhhccCChhHHHHhcccCC---CCCeeeeec----cc
Q 044412 29 IIANQLKKCSSIKEL-ECVYATIVKTNANL--DCFLAKQFISFCTSRFHFIDYTILVFPQMQ---EPNVFVYHA----FS 98 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~-~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~----~~ 98 (311)
.+...+..||++..+ .+++....-....| ....|+.-+.++ .+....+.|..=++... .||..--.- -.
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~t~~~lq~wT~r~~~l-~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~ 114 (366)
T KOG2796|consen 36 NWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWTVRLALL-VKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPG 114 (366)
T ss_pred hhHHHHhhhHHHHHHHhhhhhhhheeeccchhHHHHHHHHHHHH-HHHhhhHHHHhhhhhhccCCCcceeeeeccccCCC
Confidence 344455566665554 23322111111222 335667667777 88888888866655554 344321111 12
Q ss_pred cCC-ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC--HhHH-
Q 044412 99 SLR-HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK--FATW- 174 (311)
Q Consensus 99 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~--~~~~- 174 (311)
+.| .+--+++++...... .-|+ -+++|++.+.-...+++ ....++....|. +..|
T Consensus 115 rrGSmVPFsmR~lhAe~~~---------------~lgn--pqesLdRl~~L~~~V~~----ii~~~e~~~~~ESsv~lW~ 173 (366)
T KOG2796|consen 115 RRGSMVPFSMRILHAELQQ---------------YLGN--PQESLDRLHKLKTVVSK----ILANLEQGLAEESSIRLWR 173 (366)
T ss_pred CcCccccHHHHHHHHHHHH---------------hcCC--cHHHHHHHHHHHHHHHH----HHHHHHhccchhhHHHHHH
Confidence 333 445566655433221 2233 24667666665555555 444444443322 1112
Q ss_pred ---HHHHHHHHHH---------HHHHHhhCCCC----cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 175 ---NTMIDAYARL---------AELLFNKMPAW----DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 175 ---~~li~~~~~~---------a~~~~~~m~~~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
..+...+..+ +..++++..+. +...-..+.+.--+.|+.+.|..+|++..+..-..|..+++.+
T Consensus 174 KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 174 KRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 1122222221 44555544433 3444445555555579999999999988776556666666655
Q ss_pred HH-----HHhccCChhhHHHHH
Q 044412 239 LS-----ACAHLGALDLGRGIQ 255 (311)
Q Consensus 239 i~-----a~~~~~~~~~a~~~~ 255 (311)
+. .|...+++-.|...+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHhhhhhheecccchHHHHHHH
Confidence 42 233344444444444
No 194
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.22 E-value=6.1 Score=29.36 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCCcc
Q 044412 140 TAMVDNYSYSNKFFE 154 (311)
Q Consensus 140 ~~ll~~~~~~g~~~~ 154 (311)
..+|..+...+....
T Consensus 11 ~~vv~~~~~~~~~~~ 25 (140)
T smart00299 11 SEVVELFEKRNLLEE 25 (140)
T ss_pred HHHHHHHHhCCcHHH
Confidence 345555555555556
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=11 Score=32.18 Aligned_cols=170 Identities=11% Similarity=0.068 Sum_probs=107.6
Q ss_pred hccCChhHHHHhcccCCC-CCeeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQE-PNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDN 145 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~-~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~ 145 (311)
-..+++..+..++++.+. .+..+.+- ..+.|+++.|.+-|+.-.+- +|++|- ..||.-+-.
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-------------sGyqpl-lAYniALaH 188 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-------------SGYQPL-LAYNLALAH 188 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-------------cCCCch-hHHHHHHHH
Confidence 346777778888888873 44433333 67899999999999886543 345554 467766655
Q ss_pred HHhCCCCccchHHHHHHhccCCC-------------CCHh--------HHHHHHHHHHHH------------HHHHHhhC
Q 044412 146 YSYSNKFFESRRVSRRLFDEMPE-------------RKFA--------TWNTMIDAYARL------------AELLFNKM 192 (311)
Q Consensus 146 ~~~~g~~~~a~~~a~~~~~~~~~-------------~~~~--------~~~~li~~~~~~------------a~~~~~~m 192 (311)
|. .|+.+.|.....++.+++.+ +|+. .-+.++.++--. |.+-+..|
T Consensus 189 y~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 189 YS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred Hh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 54 56788866666666665432 2221 223344444321 88888888
Q ss_pred CCC-----cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 193 PAW-----DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 193 ~~~-----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+.+ |.+|...+--.- ..+++.+..+-+.-+...+ +.-..||..++-.||++.-++.|-+++.+
T Consensus 268 PPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 743 666655543322 2356666666666666542 23467999999999999999988877633
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.14 E-value=0.74 Score=29.39 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 044412 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG-FAHEALGMFDRMTY 304 (311)
Q Consensus 231 ~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~M~~ 304 (311)
++.+|..+=..+...|++++|...|.. |.++ ...+...|..+-.+|...| ++++|...+++-.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~------ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEK------AIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHH------HHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 356677777788888888866665533 2211 0235678899999999999 79999999988664
No 197
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.07 E-value=6.7 Score=29.58 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=71.8
Q ss_pred HHHhcCCCch--hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHH
Q 044412 127 VWKNGFSSPV--FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMI 204 (311)
Q Consensus 127 ~~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li 204 (311)
+.+.+..++. ...|++|......+++.. ..++++.+..-+. ..+. ...+-.+|++++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~----~v~~L~~l~~l~~----~~~~-------------~~~~~ssf~~if 86 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSG----VVSILEHLHFLNT----DNII-------------GWLDNSSFHIIF 86 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHH----HHHHHHHHHHhhH----HHHh-------------hhcccchHHHHH
Confidence 3444566664 457889999898899999 6666665522111 0000 123566899999
Q ss_pred HHHHhCCC-hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 205 TSYSQNKQ-FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 205 ~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
.+.++..- ---+..+|.-|++.+.+++..-|..+|+++.+.-..
T Consensus 87 ~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 87 KSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 99977665 456778999999989999999999999999886433
No 198
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=89.78 E-value=1.7 Score=33.22 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHHHH
Q 044412 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALD 218 (311)
Q Consensus 140 ~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a~~ 218 (311)
-.+-..+...|++++ |.++|+-...- +| +..-|-.|--++-..|++++|+.
T Consensus 39 Y~~A~~ly~~G~l~~----A~~~f~~L~~~------------------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 39 YRYAMQLMEVKEFAG----AARLFQLLTIY------------------------DAWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHHHHHHHCCCHHH----HHHHHHHHHHh------------------------CcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 334455778899999 77777753321 33 34456666666777799999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
.|....... +-|+..+-.+=.++...|+.+.|++.|+.
T Consensus 91 aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 91 AYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999988765 24567777778889999999988776644
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.72 E-value=14 Score=34.44 Aligned_cols=126 Identities=13% Similarity=0.005 Sum_probs=81.4
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCCcc-chHHHHHHhccCCC--CCH-hHHHHHHHHHHHH-------------HHHHHhh
Q 044412 129 KNGFSSPVFVQTAMVDNYSYSNKFFE-SRRVSRRLFDEMPE--RKF-ATWNTMIDAYARL-------------AELLFNK 191 (311)
Q Consensus 129 ~~g~~~~~~~~~~ll~~~~~~g~~~~-a~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~-------------a~~~~~~ 191 (311)
..+...+...|...+.+.......+. ...-|..+|++..+ |+- ..|..+..++... +.+....
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34566788999999998665543221 22237778777654 442 2333332222111 2222222
Q ss_pred -----CCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 192 -----MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 192 -----m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
....+...|.++--.....|++++|...+++....+ |+...|..+-..+...|+.++|...+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 112345677777666666799999999999998854 788999999999999999997766553
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.40 E-value=5.8 Score=33.13 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=51.0
Q ss_pred HHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC----CCeeeeec---------
Q 044412 30 IANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE----PNVFVYHA--------- 96 (311)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~--------- 96 (311)
+...+...+..+-...++..+++..-+.++.....|.+.- .+.|+.+.|...|+..++ -|-.+.+.
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~-MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS-MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3333444444444466666677766666777777777777 778888888877775432 12222211
Q ss_pred cccCCChhHHHHHHHHHHHC
Q 044412 97 FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~ 116 (311)
+.-++++..|...|.+....
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred eecccchHHHHHHHhhcccc
Confidence 55556666666666665443
No 201
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.40 E-value=2.3 Score=35.96 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
..++..++..+..+|+++. +.+.+++....+ .-|...|..+|.+|.+.|+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~----~~~~l~~Li~~d-----------------------p~~E~~~~~lm~~y~~~g~~~~ 205 (280)
T COG3629 153 IKALTKLAEALIACGRADA----VIEHLERLIELD-----------------------PYDEPAYLRLMEAYLVNGRQSA 205 (280)
T ss_pred HHHHHHHHHHHHhcccHHH----HHHHHHHHHhcC-----------------------ccchHHHHHHHHHHHHcCCchH
Confidence 3467778888888888888 555555433221 2277899999999999999999
Q ss_pred HHHHHHHHHh-----cCCCCCHHHHHHHHHHHh
Q 044412 216 ALDAFNKTKK-----SGTGSDQVTMATVLSACA 243 (311)
Q Consensus 216 a~~~~~~m~~-----~g~~p~~~t~~~li~a~~ 243 (311)
|++.|+.+.+ .|+.|-..+.........
T Consensus 206 ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 206 AIRAYRQLKKTLAEELGIDPAPELRALYEEILR 238 (280)
T ss_pred HHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhc
Confidence 9999999876 599999998888777743
No 202
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=89.35 E-value=14 Score=32.21 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=20.7
Q ss_pred CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 044412 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233 (311)
Q Consensus 194 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 233 (311)
..|..+.--+-..+-..|+.+.++...++-.+ +-||.-
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 33444444444555556666666666666554 345543
No 203
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.54 E-value=1.3 Score=24.28 Aligned_cols=26 Identities=12% Similarity=0.346 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~ 224 (311)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998854
No 204
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.52 E-value=3.8 Score=32.19 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ--VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
..+..+.+-|++.|+.++|++.|.++......|.. ..+-.+|......+++..+...... |....+....++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k------a~~~~~~~~d~~ 110 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK------AESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHhccchHH
Confidence 46889999999999999999999999987666654 4577888999999999988766433 333333322111
Q ss_pred ----chhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 276 ----LLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 276 ----~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
...|..+. +...|++.+|-+.|-+.
T Consensus 111 ~~nrlk~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 111 RRNRLKVYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHH--HHHhchHHHHHHHHHcc
Confidence 23333332 23467888888777554
No 205
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=13 Score=30.87 Aligned_cols=140 Identities=9% Similarity=0.032 Sum_probs=90.1
Q ss_pred hhhHHHHHhhhhhcCCCCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchh---HHHHHHHHHhhccCChhHH
Q 044412 3 VKYVRAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCF---LAKQFISFCTSRFHFIDYT 79 (311)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~g~~~~a 79 (311)
|..-++++...+.+-.-+..-.+....++.+ -.|++...++..+..+.+.= +-+.. ....++ --.|+.++|
T Consensus 32 v~l~~~~~~~~k~~~~g~e~w~l~EqV~IAA-ld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~l----Ea~~~~~~A 105 (289)
T KOG3060|consen 32 VQLGSEVLNYSKSGALGDEIWTLYEQVFIAA-LDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLL----EATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHhhhcccCchHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHH----HHhhchhhH
Confidence 3445566655555512222222333344444 45788888988888877653 22222 233333 445899999
Q ss_pred HHhcccCCCCCe---eeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCC
Q 044412 80 ILVFPQMQEPNV---FVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF 152 (311)
Q Consensus 80 ~~~~~~m~~~~~---~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 152 (311)
.++++.+.+.|. +++.- .-..|...+|++-+.+..+. +..|...|.-+-+.|...|++
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---------------F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---------------FMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------hcCcHHHHHHHHHHHHhHhHH
Confidence 999999876542 22211 34446666888777776654 678999999999999999999
Q ss_pred ccchHHHHHHhccCC
Q 044412 153 FESRRVSRRLFDEMP 167 (311)
Q Consensus 153 ~~a~~~a~~~~~~~~ 167 (311)
++ |.-.++++.
T Consensus 171 ~k----A~fClEE~l 181 (289)
T KOG3060|consen 171 EK----AAFCLEELL 181 (289)
T ss_pred HH----HHHHHHHHH
Confidence 99 777777653
No 206
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.75 E-value=6.4 Score=35.87 Aligned_cols=141 Identities=9% Similarity=0.048 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhH
Q 044412 59 CFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFV 138 (311)
Q Consensus 59 ~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~ 138 (311)
..-.+.+++.+ -+.|..+.|+++...- + .-+....+.|+++.|.++-++ ..+...
T Consensus 295 ~~~~~~i~~fL-~~~G~~e~AL~~~~D~---~-~rFeLAl~lg~L~~A~~~a~~--------------------~~~~~~ 349 (443)
T PF04053_consen 295 KDQGQSIARFL-EKKGYPELALQFVTDP---D-HRFELALQLGNLDIALEIAKE--------------------LDDPEK 349 (443)
T ss_dssp HHHHHHHHHHH-HHTT-HHHHHHHSS-H---H-HHHHHHHHCT-HHHHHHHCCC--------------------CSTHHH
T ss_pred hhHHHHHHHHH-HHCCCHHHHHhhcCCh---H-HHhHHHHhcCCHHHHHHHHHh--------------------cCcHHH
Confidence 45578888888 9999999999887542 1 111114567777777666543 346779
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~ 218 (311)
|..|-+...+.|+++- |++.+.... -|..|+--|...|+.++-.+
T Consensus 350 W~~Lg~~AL~~g~~~l----Ae~c~~k~~-------------------------------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 350 WKQLGDEALRQGNIEL----AEECYQKAK-------------------------------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHHHHHTTBHHH----HHHHHHHCT--------------------------------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHcCCHHH----HHHHHHhhc-------------------------------CccccHHHHHHhCCHHHHHH
Confidence 9999999999999999 888888743 35566777788888888777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHH
Q 044412 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSL 265 (311)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~ 265 (311)
+-+.-...| -++..+.++.-.|+.++..+++...|+..+|.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIETGRLPEAA 435 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHHH
Confidence 777766655 26777777888899998888888888887774
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=87.50 E-value=2.3 Score=27.36 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
..|.+.+++++|.++++.+...+ +-+...+...-.++...|+++.|...++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 46778899999999999998752 22455566677778888888877665543
No 208
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.49 E-value=20 Score=36.32 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCC--ChhHHHHHHHHH--HhcC---CCCCHHHHHHHHHHH-----------------hccCChhhHHHHH
Q 044412 200 WTTMITSYSQNK--QFREALDAFNKT--KKSG---TGSDQVTMATVLSAC-----------------AHLGALDLGRGIQ 255 (311)
Q Consensus 200 y~~li~~~~~~g--~~~~a~~~~~~m--~~~g---~~p~~~t~~~li~a~-----------------~~~~~~~~a~~~~ 255 (311)
|..-+..+...| .+++++++.++= ...+ ..||...+..+..+| .+.|+.++|...+
T Consensus 896 y~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~ 975 (1265)
T KOG1920|consen 896 YEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAY 975 (1265)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHH
Confidence 444555555554 455555544331 0111 367777666666444 3444555555555
Q ss_pred HhhCChHHHHHHHhhcCCCCch---hHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 256 IYCRSLGRSLLVFFKLREKNLL---CWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
..+|+..++..+-.++..+-.. +-..|+.-+...|+.-+|-++..+-
T Consensus 976 ~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 5555555555554444432222 2256677777777777777666553
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.39 E-value=1.3 Score=39.52 Aligned_cols=122 Identities=11% Similarity=0.178 Sum_probs=87.4
Q ss_pred HHHhhccChhhHHHHHHHHHHhc-cCcchhHHHHHHHHHhhccCChhHHHHhccc-CC-CCCeeeeec-----cccCCCh
Q 044412 32 NQLKKCSSIKELECVYATIVKTN-ANLDCFLAKQFISFCTSRFHFIDYTILVFPQ-MQ-EPNVFVYHA-----FSSLRHP 103 (311)
Q Consensus 32 ~~l~~~~~~~~~~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~-m~-~~~~~~~~~-----~~~~~~~ 103 (311)
..+.....++.++.+|-...+.| +.|++.+++++|..+ + .|+...|.++|+- |. -||...|.- +.+-++-
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde 482 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-A-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDE 482 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-h-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH
Confidence 33344455666788999999988 788999999999887 4 5777888888865 22 366555544 6777888
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc--hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP--VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
..|..+|+.-..+ +..+ ..+|..+|+-=...|++..+..+-..++...++.+
T Consensus 483 ~naraLFetsv~r---------------~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 483 ENARALFETSVER---------------LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHHHhHHH---------------HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 8888888865443 2233 56888999988889999887776666666666544
No 210
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.29 E-value=1.7 Score=23.84 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 278 CWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 278 ~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999854
No 211
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.97 E-value=19 Score=30.95 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=86.8
Q ss_pred HHHHHHHhhccC-hhhH----HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCC
Q 044412 28 HIIANQLKKCSS-IKEL----ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRH 102 (311)
Q Consensus 28 ~~~~~~l~~~~~-~~~~----~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 102 (311)
.++...+...+. ++.. ..+++.|++.|++-+..+|-+..-.. .. .+-+.. ...
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~-~~-~~~~~~--------------------~~~ 118 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIIL-EE-EEKEDY--------------------DEI 118 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHH-Hh-cccccH--------------------HHH
Confidence 366677776666 4444 78899999999998887776644444 22 111111 113
Q ss_pred hhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHH
Q 044412 103 PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182 (311)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~ 182 (311)
..+|..+|+.|++.-.-. -.++-.++..+|.. ..++++.-.+-++.+++.+.+.
T Consensus 119 ~~ra~~iy~~mKk~H~fL-----------Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~------------- 172 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFL-----------TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADA------------- 172 (297)
T ss_pred HHHHHHHHHHHHHhCccc-----------cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHh-------------
Confidence 577888888887643100 13445566666554 3344444222233333332211
Q ss_pred HHHHHHHhhCCCCcHhHHHHHHHHHHhCCC---hhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 183 RLAELLFNKMPAWDIRSWTTMITSYSQNKQ---FREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 183 ~~a~~~~~~m~~~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
.+.+-|..-+-+-|-+++.... +.++.++++.+.+.|+++....|..+
T Consensus 173 --------~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 173 --------GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred --------CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 1222233333333444443322 55788999999999999988876643
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.93 E-value=1.9 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.+|..+-..|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35778889999999999999999999874
No 213
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.06 E-value=3.2 Score=38.23 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=70.1
Q ss_pred HHHHHHHH-HhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC---CCCeeeeec----cccCCChhHHHHHHHHHHH
Q 044412 44 ECVYATIV-KTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ---EPNVFVYHA----FSSLRHPLQAIAFYLYMLR 115 (311)
Q Consensus 44 ~~l~~~m~-~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~----~~~~~~~~~a~~~~~~m~~ 115 (311)
.++|-.+. ..+-++|+.+...|=-.| --.|.+++|...|+... ..|...||- ++...+.++|+..|.+-.+
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy-~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLY-NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHH-hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 44444443 455446666666666666 77889999999998865 345667777 8888889999999988766
Q ss_pred CCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhc
Q 044412 116 AEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 116 ~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
++|+ +.+...|--+|...|.+++ |...|-
T Consensus 493 ----------------LqP~yVR~RyNlgIS~mNlG~ykE----A~~hlL 522 (579)
T KOG1125|consen 493 ----------------LQPGYVRVRYNLGISCMNLGAYKE----AVKHLL 522 (579)
T ss_pred ----------------cCCCeeeeehhhhhhhhhhhhHHH----HHHHHH
Confidence 5777 4455556667888899988 555443
No 214
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.05 E-value=0.5 Score=35.48 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=44.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.+|+.+-+.+.++....+++.+...+-.-+....+.++..|++.+..+....+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3577777889999999999999988777788999999999999988776655554
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.04 E-value=15 Score=33.23 Aligned_cols=66 Identities=6% Similarity=-0.020 Sum_probs=51.4
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcH----hHHHHHHHHHH
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI----RSWTTMITSYS 208 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~----~~y~~li~~~~ 208 (311)
+.+...++.+-.+|.+.|++++ |...|++..+. .|+. .+|..+-.+|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeE----AIa~f~rALeL------------------------~Pd~aeA~~A~yNLAcaya 123 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKD----ALAQFETALEL------------------------NPNPDEAQAAYYNKACCHA 123 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh------------------------CCCchHHHHHHHHHHHHHH
Confidence 3457788999999999999999 66666553321 2332 45889999999
Q ss_pred hCCChhHHHHHHHHHHhc
Q 044412 209 QNKQFREALDAFNKTKKS 226 (311)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~ 226 (311)
..|+.++|++.+++..+.
T Consensus 124 ~LGr~dEAla~LrrALel 141 (453)
T PLN03098 124 YREEGKKAADCLRTALRD 141 (453)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998775
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=85.98 E-value=2.3 Score=27.31 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=38.9
Q ss_pred HHHhccCChhhHHHHHHhhCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 240 SACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 240 ~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..|.+.++++.| .++++.+. ..++..|...-..+...|++.+|...|++..+.
T Consensus 3 ~~~~~~~~~~~A-------------~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEA-------------LEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHH-------------HHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346666777654 44444443 235677888889999999999999999998864
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.84 E-value=15 Score=30.95 Aligned_cols=94 Identities=11% Similarity=-0.039 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC--cHhHHHHHHHHHHhCCCh
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW--DIRSWTTMITSYSQNKQF 213 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~--~~~~y~~li~~~~~~g~~ 213 (311)
...|+..+..+.+.|++++ |...|+.... .-+.. ....+--+-..|-..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~----Ai~af~~fl~----------------------~yP~s~~a~~A~y~LG~~y~~~g~~ 196 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDD----AIVAFQNFVK----------------------KYPDSTYQPNANYWLGQLNYNKGKK 196 (263)
T ss_pred HHHHHHHHHHHHhcCCHHH----HHHHHHHHHH----------------------HCcCCcchHHHHHHHHHHHHHcCCH
Confidence 4557777766677789999 5555554322 11111 023455677888899999
Q ss_pred hHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 214 REALDAFNKTKKSG--TGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 214 ~~a~~~~~~m~~~g--~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
++|...|..+.+.- -......+-.+...+...|+.+.|..++
T Consensus 197 ~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~ 240 (263)
T PRK10803 197 DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY 240 (263)
T ss_pred HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998631 1112334444555566777777665544
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=12 Score=31.81 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=70.8
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHhhCChHHHHHHHhhcC-
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHL-GALDLGRGIQIYCRSLGRSLLVFFKLR- 272 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~a~~~~-~~~~~a~~~~~~~~~~~~a~~~~~~~~- 272 (311)
|...|--|-..|...|+.+.|..-|..-.+ .|-. ...+..+-.++... |....+ ++.++|++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta-----------~a~~ll~~al~ 221 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTA-----------KARALLRQALA 221 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccH-----------HHHHHHHHHHh
Confidence 788999999999999999999999999776 3433 44444444444332 222211 5666666665
Q ss_pred -C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 273 -E-KNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 273 -~-p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+ -|+..-..|-.++...|++.+|...++.|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 35677788888999999999999999999875
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=85.68 E-value=7.8 Score=29.88 Aligned_cols=87 Identities=9% Similarity=-0.033 Sum_probs=55.4
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~ 286 (311)
+-..|++++|..+|.-+..-+ .-+..-|..|-.+|-..++++.|...+..+..++. -|+..+-..-.++
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----------~dp~p~f~agqC~ 115 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK----------NDYRPVFFTGQCQ 115 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----------CCCCccchHHHHH
Confidence 345699999999998876532 22334455555666677888888877755333322 3444455556677
Q ss_pred HhcCChHHHHHHHHHHHH
Q 044412 287 AIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~~ 304 (311)
...|+.+.|...|....+
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 777777777777766544
No 220
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=85.68 E-value=31 Score=32.25 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=76.0
Q ss_pred CCCCHhHHHHHHHHHHHH----------HHHHHhhCC--CCcH-hHHHHHHHHHHhC---C-----ChhHHHHHHHHHHh
Q 044412 167 PERKFATWNTMIDAYARL----------AELLFNKMP--AWDI-RSWTTMITSYSQN---K-----QFREALDAFNKTKK 225 (311)
Q Consensus 167 ~~~~~~~~~~li~~~~~~----------a~~~~~~m~--~~~~-~~y~~li~~~~~~---g-----~~~~a~~~~~~m~~ 225 (311)
...+...|...+.+.... |..+|++-. +||- ..|..+..++... + ++..+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 345667788888776542 778887775 4643 3344333333221 1 12233333333222
Q ss_pred c-CCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 226 S-GTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 226 ~-g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
. ....+...|.++--.....|++++|...++. |..+ .|+...|..+-..+...|+.++|.+.+++-..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~r------Al~L-----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINK------AIDL-----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHH------HHHc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2344556677665555566788766554422 2221 47778899999999999999999999988654
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.62 E-value=12 Score=29.70 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQM 86 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m 86 (311)
.+...+...|+..+++..|.+....-+..|....-.+-.+- ...+++..|...++.+
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq-fa~~~~A~a~~tLe~l 150 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ-FAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHH-HhhccHHHHHHHHHHH
Confidence 34444555555555555555555544455555555555555 5555555555555443
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.12 E-value=8.9 Score=37.19 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=48.8
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh-HHHHHHHHHHHH-----HHHHHhhCCCCcHhHH
Q 044412 127 VWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA-TWNTMIDAYARL-----AELLFNKMPAWDIRSW 200 (311)
Q Consensus 127 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~-~~~~li~~~~~~-----a~~~~~~m~~~~~~~y 200 (311)
+.+.|+. +...-+.||++|.+.++.++ ..++.+...+...+ -.-..+.-+-+. |..+=.+-. .+....
T Consensus 423 L~~~gla-~~dhttlLLncYiKlkd~~k----L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~-~he~vl 496 (933)
T KOG2114|consen 423 LHKKGLA-NSDHTTLLLNCYIKLKDVEK----LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK-KHEWVL 496 (933)
T ss_pred HHHcccc-cchhHHHHHHHHHHhcchHH----HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc-cCHHHH
Confidence 3344443 33444889999999999999 88888776632111 112222222221 222211111 133333
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
..+++ ..|++++|++++..|.=
T Consensus 497 ~ille---~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 497 DILLE---DLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHH---HhcCHHHHHHHHhcCCH
Confidence 44443 45788889888877643
No 223
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.22 E-value=0.67 Score=39.35 Aligned_cols=104 Identities=11% Similarity=0.123 Sum_probs=74.8
Q ss_pred HHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC-------CCeeeeec--cccCCChhHHHHHHHHHHHC
Q 044412 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-------PNVFVYHA--FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 46 l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-------~~~~~~~~--~~~~~~~~~a~~~~~~m~~~ 116 (311)
+...-...|.+.+..+...++..- .....++++...+=.+.. ++...+.. ++-.-++++++.++..=.
T Consensus 51 ~~~kkF~~g~~~s~~~Vd~~V~v~-~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npI-- 127 (418)
T KOG4570|consen 51 LMDKKFERGLPVSSLTVDRLVDVI-SSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPI-- 127 (418)
T ss_pred cchhhhhcCCCcceeehhhhhhcc-ccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcc--
Confidence 444445567777888888888877 777888888877655542 33333333 566667788887776554
Q ss_pred CCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhc
Q 044412 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 117 ~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
+.|+-||..+++.+|+.+.+.++..+|-+++..+..
T Consensus 128 ------------qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 128 ------------QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ------------hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 455899999999999999999999996666555543
No 224
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.16 E-value=15 Score=31.53 Aligned_cols=103 Identities=10% Similarity=0.146 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHHh--CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc--cCChhhHHHHHHhhCChHHHHHHHhhcC
Q 044412 197 IRSWTTMITSYSQ--NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH--LGALDLGRGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 197 ~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~--~~~~~~a~~~~~~~~~~~~a~~~~~~~~ 272 (311)
..++.+++..-.. ...+++.+++++.|.+.|+.-+..+|-+..-.... ..+++. ....|..+|+.|+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~---------~~~ra~~iy~~mK 130 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDE---------IIQRAKEIYKEMK 130 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHH---------HHHHHHHHHHHHH
Confidence 4444444443322 01245667899999999999999888764433333 333332 2337888888888
Q ss_pred -------CCCchhHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCC
Q 044412 273 -------EKNLLCWNSITEALAIHGFA----HEALGMFDRMTYENVRPN 310 (311)
Q Consensus 273 -------~p~~~~~~~li~~~~~~g~~----~~a~~~~~~M~~~g~~P~ 310 (311)
.++-.++..|+.. ...+. +++..+|+.+.+.|+..+
T Consensus 131 k~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 131 KKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3445566666555 33333 446777888888787654
No 225
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.16 E-value=2 Score=29.78 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 39 SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 39 ~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
+.=++++-++.+....+.|++.+..+.+++| .|..++..|.++|+.++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAc-RRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRAC-RRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 3335577777788888999999999999999 99999999999998664
No 226
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=83.53 E-value=24 Score=29.24 Aligned_cols=54 Identities=7% Similarity=0.153 Sum_probs=41.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKS--GTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
.+..-|-+.|.+.-|..=|+.+.+. +.+........++.+|...|..++|....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3445578889999999988888873 45556677788889999999888776543
No 227
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.99 E-value=5.3 Score=30.62 Aligned_cols=93 Identities=10% Similarity=0.012 Sum_probs=52.8
Q ss_pred HHHHHHHHH--hhccCChhHHHHhcccCC--CCCeeeeec-----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 61 LAKQFISFC--TSRFHFIDYTILVFPQMQ--EPNVFVYHA-----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 61 ~~~~ll~~~--~~~~g~~~~a~~~~~~m~--~~~~~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
+.+.||... +.+.++.+++..+++.+. +|....... +.+.|++.+|+++|+++...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--------------- 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--------------- 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---------------
Confidence 344444433 155677788888877765 455444433 77888888888888887654
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCC
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~ 169 (311)
.|......+|+..|.....=..=+..|.++.+....|
T Consensus 74 -~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 74 -APGFPYAKALLALCLYALGDPSWRRYADEVLESGADP 110 (160)
T ss_pred -CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCh
Confidence 3444444555555444433233223355555544433
No 228
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.43 E-value=44 Score=31.38 Aligned_cols=59 Identities=7% Similarity=-0.076 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFN--------KTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
..+--+++..-...|+++.|++++. .+.+.+-.| .+...++..+.+.++-+.|..++..
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHH
Confidence 3455566777888999999999999 555555555 4555666667777777777777655
No 229
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.34 E-value=2.1 Score=29.96 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 40 IKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 40 ~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
.=++++-+..+....+.|++.+..+.+++| .|..++..|.++|+.++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAc-RRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRAC-RRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHH-HHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 334566777777888999999999999999 99999999999998764
No 230
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.29 E-value=3.3 Score=23.00 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998764
No 231
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.00 E-value=3.7 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788889999999999999999998764
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.80 E-value=3.8 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 233 (311)
+|..+-..|...|++++|+++|++..+. .|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 5677888999999999999999999885 55543
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.16 E-value=17 Score=33.24 Aligned_cols=144 Identities=10% Similarity=0.008 Sum_probs=65.4
Q ss_pred cccCCChhHHHHHHH--HHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHH
Q 044412 97 FSSLRHPLQAIAFYL--YMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW 174 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~ 174 (311)
..-.++++++.++.+ ++.. ..+..-.+.++.-+-+.|..+. |..+...
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-----------------~i~~~~~~~i~~fL~~~G~~e~----AL~~~~D--------- 320 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-----------------NIPKDQGQSIARFLEKKGYPEL----ALQFVTD--------- 320 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-----------------G--HHHHHHHHHHHHHTT-HHH----HHHHSS----------
T ss_pred HHHcCChhhhhhhhhhhhhcc-----------------cCChhHHHHHHHHHHHCCCHHH----HHhhcCC---------
Confidence 566778888777765 2211 1124456778888888888888 5555432
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 044412 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 175 ~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
|+ .=.+-..+.|+++.|.++.++. .+...|..|-....+.|+++.|+..
T Consensus 321 --------------------~~-----~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c 369 (443)
T PF04053_consen 321 --------------------PD-----HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEEC 369 (443)
T ss_dssp --------------------HH-----HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred --------------------hH-----HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 10 0112223345555555443332 2444555555555555555555555
Q ss_pred HHhhCChHHHHHHHhhcC-----------CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 255 QIYCRSLGRSLLVFFKLR-----------EKNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
+...++.+...-++.-.. .....-+|....++.-.|+.+++.+++.+
T Consensus 370 ~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 370 YQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555443333222221111 01112356666667777777777776654
No 234
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.10 E-value=39 Score=30.31 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=16.9
Q ss_pred HHHHHHhccCcchhH--HHHHHHHHhhccCChhHHHHhccc
Q 044412 47 YATIVKTNANLDCFL--AKQFISFCTSRFHFIDYTILVFPQ 85 (311)
Q Consensus 47 ~~~m~~~g~~p~~~~--~~~ll~~~~~~~g~~~~a~~~~~~ 85 (311)
.+.+.+.|..|+... ....+..+ ++.|+.+-+.-+++.
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A-~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLA-MKFRDSEAIKLLMKH 57 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHH-HHcCCHHHHHHHHhC
Confidence 344445555544322 22233333 455555555444443
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.46 E-value=5 Score=21.21 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+|..+-..|...|++++|...|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888999999999999999999876
No 236
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=79.33 E-value=35 Score=28.25 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=70.7
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh----hCChHHHHHHHhhcCCCCchhHHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY----CRSLGRSLLVFFKLREKNLLCWNSI 282 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~----~~~~~~a~~~~~~~~~p~~~~~~~l 282 (311)
|.+..+-+---++.+-.+..++.-+..-..+++ +...||+++|...++. .|.+ .+..+|+-..+|.+.....|
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~V-n~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLV-NQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhcccccc-chhhhhhccCCCChHHHHHH
Confidence 334444444445555555567777666666665 5667888888776665 2222 35777777778999988888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 283 i~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
+..|.+ +++++|.++++++=+.|+.|.
T Consensus 246 l~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 246 LQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 887765 789999999999999998874
No 237
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=79.09 E-value=15 Score=36.58 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---------------------
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------------------- 257 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~--------------------- 257 (311)
.|..|=.-|+...+...|...|+.-.+-. .-|......+.+.|++..+++.|..+.-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555665556666666666654321 22455677888889999999888877433
Q ss_pred --hCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 258 --CRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 258 --~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.++...|..-|..-. ..|...|..+..+|.+.|++..|.++|++...
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 334444444444333 23678899999999999999999999988754
No 238
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=79.04 E-value=60 Score=30.86 Aligned_cols=113 Identities=10% Similarity=0.078 Sum_probs=68.3
Q ss_pred HHHHHhhCCC--CcH-hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCCh
Q 044412 185 AELLFNKMPA--WDI-RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL 261 (311)
Q Consensus 185 a~~~~~~m~~--~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~ 261 (311)
|....+.-.+ |+. .-|-.--+.+...|++++|...+++-.+-. .||...=.--..-..++...++|..+.....+.
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 6666665554 322 234444577889999999999999988753 455555445556667888899888776653333
Q ss_pred H-HHHHHHhhcCCCCchhHHHH--HHHHHhcCChHHHHHHHHHH
Q 044412 262 G-RSLLVFFKLREKNLLCWNSI--TEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 262 ~-~a~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~~~~~~M 302 (311)
+ .|..-+.+|. .+|-.+ -.+|.+.|++.+|++-|...
T Consensus 469 ~~~~~~~L~~mq----cmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 469 GFGAVNNLAEMQ----CMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred ccchhhhHHHhh----hHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3 3333232222 133333 34666777777776655444
No 239
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.63 E-value=7.7 Score=27.14 Aligned_cols=77 Identities=6% Similarity=-0.138 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec--cccCCChhHHHHHHHHHHHC
Q 044412 39 SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 39 ~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~~ 116 (311)
+.+++..|-+.+...|-. ...+--.=+..+ .+.|++++|+.+.+.+.-||+..|-+ -.+.|..++...-+..|...
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSL-mNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSL-MNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHH-HccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhC
Confidence 455666777777666532 222222223445 78999999999999999999999988 56778888888888888877
Q ss_pred C
Q 044412 117 E 117 (311)
Q Consensus 117 ~ 117 (311)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 6
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=78.26 E-value=39 Score=31.19 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hccCCh-------hhHHHHHHh
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC-AHLGAL-------DLGRGIQIY 257 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~-~~~~~~-------~~a~~~~~~ 257 (311)
|--+.-++.-.+++++|.+.|.++.+.+ .....+|.-+..+| ...|+. ++|..+|..
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 4445555667799999999999998742 33444444443333 245666 666666655
No 241
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.26 E-value=9.2 Score=32.36 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTY-----ENVRPN 310 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~-----~g~~P~ 310 (311)
+-..|..+|.+|.+.|+...|...|+++.+ .|+.|-
T Consensus 186 ~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 186 DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 567899999999999999999999998875 477773
No 242
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.16 E-value=22 Score=30.13 Aligned_cols=103 Identities=9% Similarity=0.001 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC---CCHhHHHHHHHHHHHH--------HHHHHhhCC--CC-cHh
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE---RKFATWNTMIDAYARL--------AELLFNKMP--AW-DIR 198 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------a~~~~~~m~--~~-~~~ 198 (311)
+-|...|-.|-..|.+.|+++. |..-+..-.+ ++...+..+-.++... +..+|++.. +| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~----A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASD----ALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 4568899999999999999999 6666654432 3333333333333332 888898876 34 566
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 241 (311)
+-.-+-.++...|++.+|...|+.|.+. -|....+..+|..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 7767778888999999999999999985 3444445555543
No 243
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=78.16 E-value=77 Score=31.99 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCCC---Ceeeeec------cccCCChhHHHHHHHHHHHCCCCchHHHHHHH
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEP---NVFVYHA------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 128 (311)
|...+....+.| ++..+++.|..+.-.-.+. ....+|. +.+.++..+|..-|+.-.+.
T Consensus 525 daeaaaa~adty-ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------------ 591 (1238)
T KOG1127|consen 525 DAEAAAASADTY-AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT------------ 591 (1238)
T ss_pred hhhhHHHHHHHh-hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC------------
Confidence 456677888889 8999999998884222221 1122222 77778888888888776553
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 129 KNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 129 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
-+-|...|..+..+|.++|+... |.++|.....
T Consensus 592 ---dPkD~n~W~gLGeAY~~sGry~~----AlKvF~kAs~ 624 (1238)
T KOG1127|consen 592 ---DPKDYNLWLGLGEAYPESGRYSH----ALKVFTKASL 624 (1238)
T ss_pred ---CchhHHHHHHHHHHHHhcCceeh----HHHhhhhhHh
Confidence 24567889999999999999999 9999966543
No 244
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.52 E-value=12 Score=26.74 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.-|..|+.-|..+|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577788888888888888888887765
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.70 E-value=19 Score=31.87 Aligned_cols=114 Identities=10% Similarity=0.003 Sum_probs=73.7
Q ss_pred cccCCChhHHHHHHHHHHHC-----CCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH
Q 044412 97 FSSLRHPLQAIAFYLYMLRA-----EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~ 171 (311)
+.+.|++..|...|+..... +..++. . +.-...-..+++.|.-+|.+.+++..|.+.+..++..
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee----~-~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------ 286 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEE----Q-KKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------ 286 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHH----H-HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------
Confidence 67778888888887764321 111110 0 0001223456777888999999999977777777664
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 172 ATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 172 ~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
..+|+..---==.++...|+++.|...|..+.+ +.|+....+.=|..|..
T Consensus 287 ---------------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 287 ---------------------DPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred ---------------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 223444333334677788999999999999988 68887776666655554
No 246
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.61 E-value=47 Score=28.29 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=73.3
Q ss_pred HHHHHHHHHH-CCCCch---HHHHHHHH-hcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 106 AIAFYLYMLR-AEVLLT---TVHGQVWK-NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 106 a~~~~~~m~~-~~~~p~---~~~~~~~~-~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
...+++.|.. .+..++ ++.+.+.+ .|-.++..+...+|..+++.+++.+ ..++++......
T Consensus 167 islLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k----l~~fW~~~~~~~---------- 232 (292)
T PF13929_consen 167 ISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK----LFQFWEQCIPNS---------- 232 (292)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH----HHHHHHHhcccC----------
Confidence 3345555655 333333 44444443 2456777788888999999999998 777777644321
Q ss_pred HHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHH-----HHhcCCCCCHHHHHHHHHHHh
Q 044412 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK-----TKKSGTGSDQVTMATVLSACA 243 (311)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~t~~~li~a~~ 243 (311)
.+..|...|...|+.....|+..-...+.++ +++.|+..+...-..|-..+.
T Consensus 233 -----------~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 233 -----------VPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred -----------CCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 1235788899999999999998877777666 445566666665555444443
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.76 E-value=19 Score=35.07 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=39.9
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhccCChhhHHHHH--------------HhhCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT-GSDQVTMATVLSACAHLGALDLGRGIQ--------------IYCRS 260 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~a~~~~~~~~~a~~~~--------------~~~~~ 260 (311)
+...-+.|+.+|.+.++.++-.++.+.-. .|. ..|..+ .+..|.+.+-.++|..+- +..++
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~---al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~n 505 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVET---ALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHN 505 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHH---HHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcC
Confidence 34455677888888888777776666554 332 223333 233333333333333222 22666
Q ss_pred hHHHHHHHhhcC
Q 044412 261 LGRSLLVFFKLR 272 (311)
Q Consensus 261 ~~~a~~~~~~~~ 272 (311)
..+|.+.+..++
T Consensus 506 y~eAl~yi~slp 517 (933)
T KOG2114|consen 506 YEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcCC
Confidence 777777776666
No 248
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.70 E-value=46 Score=29.86 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=40.9
Q ss_pred hccCChhHHHHhcccCCCCCeeeeec------cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchh--HHHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPNVFVYHA------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF--VQTAM 142 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~--~~~~l 142 (311)
.+.|+.+.+..+++.=..++....+- .+..|+.+ +.+.+.+.| ..|+.. ...+.
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~g--------------a~~~~~~~~~~t~ 71 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHG--------------AIPDVKYPDIESE 71 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCC--------------CCccccCCCcccH
Confidence 57788888888887544444332211 34444443 233333344 333321 12234
Q ss_pred HHHHHhCCCCccchHHHHHHhccCC
Q 044412 143 VDNYSYSNKFFESRRVSRRLFDEMP 167 (311)
Q Consensus 143 l~~~~~~g~~~~a~~~a~~~~~~~~ 167 (311)
+...++.|+.+. ++.+++.+.
T Consensus 72 L~~A~~~g~~~~----v~~Ll~~~~ 92 (413)
T PHA02875 72 LHDAVEEGDVKA----VEELLDLGK 92 (413)
T ss_pred HHHHHHCCCHHH----HHHHHHcCC
Confidence 666777888888 777777654
No 249
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.23 E-value=14 Score=21.78 Aligned_cols=39 Identities=8% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 241 (311)
.++.+ -+.|-+.++..++++|.+.|+..+...|..++.-
T Consensus 8 iL~~A-k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLA-KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHH-HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33443 4668899999999999999999999999888763
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.08 E-value=15 Score=35.18 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 044412 175 NTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 175 ~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
..+..+-.+.|.++-.+.+-||-..|--=+.+++..+++++-+++-+.++ .+.=|.-.+.+|.+.|+.++|.+.
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhh
Q ss_pred HHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044412 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298 (311)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 298 (311)
+ |-+.-+.-...+|.+.|++.+|.++
T Consensus 767 i------------------prv~~l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 767 I------------------PRVGGLQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred h------------------hccCChHHHHHHHHHhccHHHHHHH
No 251
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=74.26 E-value=61 Score=28.47 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=30.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~ 252 (311)
+..+...|+...|+++...+.+- .++|...|..=-.+|...|.+..|.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHH
Confidence 34444557777777777777663 3455666666666777777666554
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=74.16 E-value=64 Score=28.71 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=37.4
Q ss_pred HHHHHHhhccCChhHHHHhcccCCCC-Ce---eeeec-------ccc---CCChhHHHHHHHHHHHC
Q 044412 64 QFISFCTSRFHFIDYTILVFPQMQEP-NV---FVYHA-------FSS---LRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 64 ~ll~~~~~~~g~~~~a~~~~~~m~~~-~~---~~~~~-------~~~---~~~~~~a~~~~~~m~~~ 116 (311)
.++-.| ....+++...++++.++.. +. .+-++ +.+ .|+.++|++++..+...
T Consensus 146 ~lllSy-RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~ 211 (374)
T PF13281_consen 146 NLLLSY-RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES 211 (374)
T ss_pred HHHHHh-hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc
Confidence 444458 8899999999999999864 21 12222 566 89999999999885443
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.65 E-value=10 Score=19.79 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 278 CWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 278 ~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777889999999999999999876
No 254
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=73.48 E-value=51 Score=27.29 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=44.7
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 185 a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
++.+|+-..+|.......|+..|.+ +++++|.+.+.++-+.|..|.-. .+.++..+-.
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 5667777778888888888888655 79999999999999999988643 3455555444
No 255
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.76 E-value=22 Score=26.95 Aligned_cols=47 Identities=11% Similarity=-0.015 Sum_probs=32.6
Q ss_pred hccCChhHHHHhcccCC--CCCeeeeec-----cccCCChhHHHHHHHHHHHCC
Q 044412 71 SRFHFIDYTILVFPQMQ--EPNVFVYHA-----FSSLRHPLQAIAFYLYMLRAE 117 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~--~~~~~~~~~-----~~~~~~~~~a~~~~~~m~~~~ 117 (311)
...++++++..+++.|. .|+..-... +...|++.+|+++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34677778888877775 344433333 788888888888888887654
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=71.71 E-value=84 Score=29.01 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH------hHHHHHHHHHHHH---------HHHHHhhCCC--CcHhHH
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF------ATWNTMIDAYARL---------AELLFNKMPA--WDIRSW 200 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~------~~~~~li~~~~~~---------a~~~~~~m~~--~~~~~y 200 (311)
.+..+++..+-.||-+.+.+......+...-... ..|..++..++-. +.++++.+.. |+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 3456777777888888844444433331111111 2455555444432 7777777765 777766
Q ss_pred HHHHHH-HHhCCChhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC---
Q 044412 201 TTMITS-YSQNKQFREALDAFNKTKKSGT---GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE--- 273 (311)
Q Consensus 201 ~~li~~-~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~--- 273 (311)
...-.- +...|++++|++.|++.....- +.....+--+.-.+...++++ +|.+.|..+.+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~-------------~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE-------------EAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH-------------HHHHHHHHHHhccc
Confidence 554433 3345888888888886543111 112223333333455555666 55555555542
Q ss_pred CCchhHHHHHHHHH-hcCCh-------HHHHHHHHHHH
Q 044412 274 KNLLCWNSITEALA-IHGFA-------HEALGMFDRMT 303 (311)
Q Consensus 274 p~~~~~~~li~~~~-~~g~~-------~~a~~~~~~M~ 303 (311)
-...+|..+..+|. ..|+. ++|.++|.+..
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 22334554444443 46667 78888887764
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=70.80 E-value=13 Score=19.45 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
.+|..+-..|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677888889999999999999998876
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.80 E-value=63 Score=27.14 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC-CC-
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSG--TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR-EK- 274 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~-~p- 274 (311)
.|+.-+..| +.|++.+|..-|....+.. -.-....+-.|-.++...|+.+.|..+|.. +.++.+ .|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~---------~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFAR---------VVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHH---------HHHhCCCCCC
Confidence 588888876 6688999999999998853 122334566688999999999977666532 111222 11
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
-+...--|-.+..+.|+.++|..+|++..+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2244555667788899999999999998764
No 259
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.49 E-value=8.3 Score=19.21 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 044412 279 WNSITEALAIHGFAHEALGMFD 300 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~ 300 (311)
...+-..+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4566788899999999998876
No 260
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.46 E-value=5.4 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 242 (311)
|.-.+|..+|+.|.+.|-+||. |+.|+.++
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 6677899999999999999984 67777654
No 261
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.28 E-value=18 Score=34.00 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHH
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a 264 (311)
|..|+-.+...|+-+....+=..-++.|. .|.-+-++...|+++++.+++...+++.+|
T Consensus 695 ~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 695 LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 33444445555554444333333333332 133334455555555555555444444443
No 262
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.08 E-value=9.8 Score=32.65 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
-++++++.++..-.+-|+-||.+|++.+|+-+.+.++...|..+.-.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 47778888888888888888888888888888888888877665443
No 263
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.00 E-value=12 Score=21.68 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=21.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 203 MITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
+-.+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 56788999999999999999886543
No 264
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.90 E-value=7 Score=20.24 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 044412 282 ITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 282 li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+-.++.+.|++++|.++|++..+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 456677889999999999998864
No 265
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.85 E-value=72 Score=29.11 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=38.7
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHhccC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~a~~~~~ 246 (311)
|...=++.++++...|++.++..++.+|... -...+..+|+.++-.++++=
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence 4445567788889999999999988888664 34589999998776666643
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=69.04 E-value=27 Score=26.23 Aligned_cols=74 Identities=9% Similarity=-0.064 Sum_probs=50.0
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
..+.|++++|.+.|+.+..+-- .-.-....---|+.+|.+.|++++|...+.++.+--+...-+.|..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYP------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCC------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4478999999999999977520 0022245566788999999999997766666666555544445555
Q ss_pred HHHHHH
Q 044412 177 MIDAYA 182 (311)
Q Consensus 177 li~~~~ 182 (311)
.+.|++
T Consensus 88 Y~~gL~ 93 (142)
T PF13512_consen 88 YMRGLS 93 (142)
T ss_pred HHHHHH
Confidence 555544
No 267
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.91 E-value=22 Score=25.02 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
+..+-+..+-...+-|++....+.++||.|.+++..|.+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~l 68 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRIL 68 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555567777777777777777777776554444
No 268
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.86 E-value=38 Score=23.85 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 263 ~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
+|.++.+.+.-||+..|-+|-. .+.|....+...+.+|..+|
T Consensus 57 ~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 57 SALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 7777777777899998877644 46677777777777776665
No 269
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.62 E-value=11 Score=21.85 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 282 ITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 282 li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678999999999999999988654
No 270
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.17 E-value=9.2 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
-.+|.||...|++++|.+++.++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999865
No 271
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=33 Score=31.62 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
-..+.+.|++..|++.|.++++.. +-|...|..---+|.+.|.+..|..
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHH
Confidence 345667899999999999998875 5577889999999999999988765
No 272
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.97 E-value=9.4 Score=24.04 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
|..-.=-+|.||...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344579999999999999999998864
No 273
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=67.77 E-value=28 Score=24.25 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
-++.+-+..+....+-|++....+.++||.+.+++..|.+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~l 65 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRIL 65 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555555667788888888888888877777555555
No 274
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=66.93 E-value=15 Score=23.50 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=42.1
Q ss_pred CCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 192 m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
+..|....++-+++.++...-+++++..+.+..+.|. .+..+|---++.+++
T Consensus 3 ~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 3 IVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp TEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3446677899999999999999999999999999986 577788777777766
No 275
>PRK15331 chaperone protein SicA; Provisional
Probab=66.85 E-value=47 Score=25.69 Aligned_cols=109 Identities=8% Similarity=0.068 Sum_probs=75.0
Q ss_pred hhHHHHHhhhhhcCCCCCchhhhHHHHHHHH------hhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 4 KYVRAIITSFKKNSFPTSVSFIRIHIIANQL------KKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
.+.+.+...+..+..+....-++..++-.++ -..|++.+++.+|..+.-.+.- ++.-|..|-.+| -..+.++
T Consensus 11 ~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~-Q~~k~y~ 88 (165)
T PRK15331 11 RVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVC-QLKKQFQ 88 (165)
T ss_pred HHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH-HHHHHHH
Confidence 3556666777777666555555444444443 3568999999999988876543 344456666666 8889999
Q ss_pred HHHHhcccC-----CCCCeeeeec---cccCCChhHHHHHHHHHHH
Q 044412 78 YTILVFPQM-----QEPNVFVYHA---FSSLRHPLQAIAFYLYMLR 115 (311)
Q Consensus 78 ~a~~~~~~m-----~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~ 115 (311)
.|...|... ..|.. .|.+ +...|+.+.|.+-|+....
T Consensus 89 ~Ai~~Y~~A~~l~~~dp~p-~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 89 KACDLYAVAFTLLKNDYRP-VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHcccCCCCc-cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999998543 23333 3444 7888999999999988755
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.29 E-value=15 Score=31.96 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHH
Q 044412 206 SYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
-|.+.|.+++|++.|..-.. +.| |.+++..=..||.+.+.+..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 46788999999999987654 456 78888888888988888876654
No 277
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.25 E-value=11 Score=27.67 Aligned_cols=43 Identities=5% Similarity=0.065 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
++-........+.|++.+..+-+++| .|..++..|..+|+-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~-RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRAC-RRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHH-HHhccHHHHHHHHHHHH
Confidence 55666677788999999999999999 99999999999998875
No 278
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.17 E-value=14 Score=31.49 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=37.8
Q ss_pred CcHh-HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044412 195 WDIR-SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240 (311)
Q Consensus 195 ~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 240 (311)
||.. -||.-|+.-.+.||+++|+.+++|-++.|++--..||-.-++
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 3444 488999999999999999999999999998877777665443
No 279
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.72 E-value=26 Score=32.28 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=57.9
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC-chhHHHHHH
Q 044412 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN-LLCWNSITE 284 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~-~~~~~~li~ 284 (311)
+.+..|+++.|+.+|.+-..-. ++|+.-|+.=..+|++.|+++.|.+ +|.+..+ + .|+ ..-|+-.-.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~---------da~k~~~-l-~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALK---------DATKTRR-L-NPDWAKGYSRKGA 78 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHH---------HHHHHHh-c-CCchhhHHHHhHH
Confidence 3456789999999999877643 4477888888888999888887643 2221110 0 233 456777777
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 044412 285 ALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 285 ~~~~~g~~~~a~~~~~~M~ 303 (311)
++.-.|++++|..-|.+-.
T Consensus 79 a~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHhcccHHHHHHHHHHHh
Confidence 7777777777777776543
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=64.93 E-value=42 Score=26.29 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHH
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREA 216 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a 216 (311)
..+..+.+.|++.|+.++ |.+.+.++.+..+.+ . .-+..+-.+|......+++..+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~----A~k~y~~~~~~~~~~-~-------------------~~id~~l~~irv~i~~~d~~~v 92 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEE----ALKAYSRARDYCTSP-G-------------------HKIDMCLNVIRVAIFFGDWSHV 92 (177)
T ss_pred HHHHHHHHHHHHhhhHHH----HHHHHHHHhhhcCCH-H-------------------HHHHHHHHHHHHHHHhCCHHHH
Confidence 467888999999999999 777777655432211 1 1233455778888888898888
Q ss_pred HHHHHHHHh
Q 044412 217 LDAFNKTKK 225 (311)
Q Consensus 217 ~~~~~~m~~ 225 (311)
.....+...
T Consensus 93 ~~~i~ka~~ 101 (177)
T PF10602_consen 93 EKYIEKAES 101 (177)
T ss_pred HHHHHHHHH
Confidence 888777654
No 281
>PLN03025 replication factor C subunit; Provisional
Probab=64.76 E-value=77 Score=27.42 Aligned_cols=84 Identities=10% Similarity=-0.053 Sum_probs=50.0
Q ss_pred HhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh--hCChHH-HHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044412 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--CRSLGR-SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300 (311)
Q Consensus 224 ~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~--~~~~~~-a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 300 (311)
.+.|+..+......++..+ .|++..+...++. .+.... ...+++-...+....-..++++.. .+++++|..++.
T Consensus 172 ~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~~~~~~a~~~l~ 248 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-KGKFDDACDGLK 248 (319)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3457777777777776543 4677777666543 111000 111222222444455556666655 488999999999
Q ss_pred HHHHcCCCCC
Q 044412 301 RMTYENVRPN 310 (311)
Q Consensus 301 ~M~~~g~~P~ 310 (311)
+|...|+.|.
T Consensus 249 ~ll~~g~~~~ 258 (319)
T PLN03025 249 QLYDLGYSPT 258 (319)
T ss_pred HHHHcCCCHH
Confidence 9998898774
No 282
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.74 E-value=1e+02 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.074 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC
Q 044412 277 LCWNSITEALAI---HGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 277 ~~~~~li~~~~~---~g~~~~a~~~~~~M~~~g~~P 309 (311)
..+.-+++++.+ .++.+.|..++.+|.+.|..|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCH
Confidence 345555666655 478999999999999988766
No 283
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.63 E-value=42 Score=26.89 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=50.0
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|+ ++|.+.|-++...+ ..+..-...-|..|-...+.+++..+....++--
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~---------------~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~---------- 170 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTP---------------ELETAELQYALATYYTKRDPEKTIQLLLRALELS---------- 170 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCC---------------CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------
Confidence 455555 77888887776655 2333333444445555667888444433333322
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~ 217 (311)
+.-..+|+..+.+|.+.|-+.|+.+.|.
T Consensus 171 -------------~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 171 -------------NPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 2222467888888899888888888774
No 284
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=64.53 E-value=72 Score=25.48 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=23.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~ 252 (311)
.|-.+....|+..+|...|.+-..--+.-|....-.+-++....++...+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 344444455555555555555443223334444444444444444444333
No 285
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.35 E-value=10 Score=28.13 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHH
Q 044412 33 QLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFC 69 (311)
Q Consensus 33 ~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~ 69 (311)
.+.+.|.-.++-.+|..|++.|-+|| .|+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 46777888888999999999999988 688888765
No 286
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.16 E-value=1.4e+02 Score=28.53 Aligned_cols=79 Identities=9% Similarity=0.075 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH----HHHHHhhCCCCcHhHHHHHHHHHHhC
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL----AELLFNKMPAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~----a~~~~~~m~~~~~~~y~~li~~~~~~ 210 (311)
+..-|..|-++..+.|++.. |.+.|.....- ..|+-.+... ....+...-+ -....|.-.-+|-..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~l----A~EC~~~a~d~-----~~LlLl~t~~g~~~~l~~la~~~~-~~g~~N~AF~~~~l~ 734 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPL----ASECFLRARDL-----GSLLLLYTSSGNAEGLAVLASLAK-KQGKNNLAFLAYFLS 734 (794)
T ss_pred chHHHHHHHHHHhhcccchh----HHHHHHhhcch-----hhhhhhhhhcCChhHHHHHHHHHH-hhcccchHHHHHHHc
Confidence 44567777777777777777 77777654432 2222222211 1111111100 011233334455666
Q ss_pred CChhHHHHHHHHH
Q 044412 211 KQFREALDAFNKT 223 (311)
Q Consensus 211 g~~~~a~~~~~~m 223 (311)
|+++++.+++.+-
T Consensus 735 g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 735 GDYEECLELLIST 747 (794)
T ss_pred CCHHHHHHHHHhc
Confidence 8888887777553
No 287
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=63.25 E-value=16 Score=21.38 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhccChhhH--HHHHHHHHHhccCcc
Q 044412 25 IRIHIIANQLKKCSSIKEL--ECVYATIVKTNANLD 58 (311)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~--~~l~~~m~~~g~~p~ 58 (311)
+|..|...+|+..+.+.+. +++.+.+.+.|+.||
T Consensus 11 vS~~TVSr~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 11 VSKSTVSRVLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp SSHHHHHHHHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred cCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 3566888888887776666 889999999999986
No 288
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.18 E-value=14 Score=26.18 Aligned_cols=78 Identities=8% Similarity=-0.108 Sum_probs=54.4
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec--cccCCChhHHHHHHHHHHH
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLR 115 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~ 115 (311)
.+.+++..|.+.+...|-.-...+.- -+..+ .+.|+++.|+..=.....||+.+|-+ -.+.|..+++...+..+..
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lI-r~~sL-mNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALI-RLSSL-MNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHH-HHHHH-HHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHH-HHHHH-HhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 36778889999999887633333332 23444 78999999977777777899999988 6788999999999988876
Q ss_pred CC
Q 044412 116 AE 117 (311)
Q Consensus 116 ~~ 117 (311)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 289
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=62.80 E-value=53 Score=24.51 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=23.7
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGR 252 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~ 252 (311)
.+..|+++.|++.|.+-..- .+-....||.=-.++.-.|+.++|.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~AL 97 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEAL 97 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHH
Confidence 34456666666666655432 1223445555556665555555553
No 290
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=62.58 E-value=43 Score=30.53 Aligned_cols=230 Identities=10% Similarity=0.069 Sum_probs=111.3
Q ss_pred hccCChhHHHHhcccCCCCCeee-ee-c----cccCCChhHHHHHHHHHHHCCCCch-------------------HHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPNVFV-YH-A----FSSLRHPLQAIAFYLYMLRAEVLLT-------------------TVHG 125 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~~~~-~~-~----~~~~~~~~~a~~~~~~m~~~~~~p~-------------------~~~~ 125 (311)
+-.|+++-+..+++.--.-|..| -| . -|-.|++ ++.+-+.+.|..|+ +|.+
T Consensus 92 saAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~l----eivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q 167 (615)
T KOG0508|consen 92 SAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHL----EIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ 167 (615)
T ss_pred hccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchh----HHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence 55667766666665443222111 11 1 3333333 34444455666555 7777
Q ss_pred HHHHhcCCCchhHH--HHHHHHHHhCCCCccchHHHHHHhccCCCC--CHhHHHHHHHHHHHH----HHHHHhhCCCCc-
Q 044412 126 QVWKNGFSSPVFVQ--TAMVDNYSYSNKFFESRRVSRRLFDEMPER--KFATWNTMIDAYARL----AELLFNKMPAWD- 196 (311)
Q Consensus 126 ~~~~~g~~~~~~~~--~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~--~~~~~~~li~~~~~~----a~~~~~~m~~~~- 196 (311)
.+.+.|..++..++ |.-++-|+..|.+|- ...++.....- |..-.+.++.+-... .+.+.+.+.++-
T Consensus 168 yLle~gADvn~ks~kGNTALH~caEsG~vdi----vq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~~~sr~~ 243 (615)
T KOG0508|consen 168 YLLEQGADVNAKSYKGNTALHDCAESGSVDI----VQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQCETSRES 243 (615)
T ss_pred HHHHhCCCcchhcccCchHHHhhhhcccHHH----HHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcCCcchhh
Confidence 77778888886554 788999999999998 87777755442 222222333333222 233332221110
Q ss_pred -HhHHHHHHHHHHh-CCChhHHHHHHHHHHh---c--CCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHH----HH
Q 044412 197 -IRSWTTMITSYSQ-NKQFREALDAFNKTKK---S--GTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGR----SL 265 (311)
Q Consensus 197 -~~~y~~li~~~~~-~g~~~~a~~~~~~m~~---~--g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~----a~ 265 (311)
+.....+=..|.. ..+.-.|+.+|.+-.+ . ...+-..+. ..+.+|.........+++-...+++++ |.
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaL 322 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLAYGYGREVNNREELEELVEDPDEMRMQAL 322 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-CchhhhhhhhhcCCHHHHHHHhcChHHHHHHHH
Confidence 0011111111111 1244456666655322 1 111222222 233444443333333333333444443 22
Q ss_pred HHHhhcC---CCCchhHHHH-HHHHHhcCChHHHHHHHHH---HHHcCCCC
Q 044412 266 LVFFKLR---EKNLLCWNSI-TEALAIHGFAHEALGMFDR---MTYENVRP 309 (311)
Q Consensus 266 ~~~~~~~---~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~---M~~~g~~P 309 (311)
-+-+.+. .||+.-|-.. .--|+..|+++.+.++|.. |+++.+.|
T Consensus 323 iirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~P 373 (615)
T KOG0508|consen 323 IIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEP 373 (615)
T ss_pred HHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCC
Confidence 2223333 3555433222 2347789999999998874 77887777
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=62.14 E-value=9.2 Score=20.58 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=19.9
Q ss_pred cHhHHHHHHHHHHhCCChhHHH
Q 044412 196 DIRSWTTMITSYSQNKQFREAL 217 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~ 217 (311)
|...|+.+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788999999999999999986
No 292
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.68 E-value=15 Score=31.41 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=30.2
Q ss_pred CCch-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044412 274 KNLL-CWNSITEALAIHGFAHEALGMFDRMTYENVR 308 (311)
Q Consensus 274 p~~~-~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 308 (311)
||.. -||.-|+...+.||+++|+.+++|.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3443 4789999999999999999999999998874
No 293
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.54 E-value=2.1e+02 Score=29.59 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=30.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc--hhHHHHHHHHHHhCC--CCccchHHHHHHhc
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP--VFVQTAMVDNYSYSN--KFFESRRVSRRLFD 164 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g--~~~~a~~~a~~~~~ 164 (311)
.+.++++=+-++++++.... ....+..| ..-|...|..+.++| .+++ +..+.+
T Consensus 863 SqkDPkEyLP~L~el~~m~~---------~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e----~~n~I~ 919 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMET---------LLRKFKIDDYLKRYEDALSHLSECGETYFPE----CKNYIK 919 (1265)
T ss_pred hccChHHHHHHHHHHhhchh---------hhhheeHHHHHHHHHHHHHHHHHcCccccHH----HHHHHH
Confidence 45678888888887763210 11112333 345777777777777 5666 554444
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.58 E-value=1.4e+02 Score=27.61 Aligned_cols=81 Identities=9% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCC-CcHhHHHHHHHHHHhCCChhHHHH
Q 044412 140 TAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA-WDIRSWTTMITSYSQNKQFREALD 218 (311)
Q Consensus 140 ~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~-~~~~~y~~li~~~~~~g~~~~a~~ 218 (311)
..+-.++.+.|+.++ |.+++.++.+. .+. .+......||+++...+.+.++..
T Consensus 263 rRLAmCarklGr~~E----AIk~~rdLlke----------------------~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 263 RRLAMCARKLGRLRE----AIKMFRDLLKE----------------------FPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HHHHHHHHHhCChHH----HHHHHHHHHhh----------------------CCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 445666778899999 55555554321 011 134466789999999999999999
Q ss_pred HHHHHHhcCCCCC-HHHHHHHHHHHhccC
Q 044412 219 AFNKTKKSGTGSD-QVTMATVLSACAHLG 246 (311)
Q Consensus 219 ~~~~m~~~g~~p~-~~t~~~li~a~~~~~ 246 (311)
++.+--+...+.. ...|+..+-.....+
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVG 345 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhc
Confidence 9998654333222 345776554443333
No 295
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.41 E-value=70 Score=24.10 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=51.7
Q ss_pred hHHHHHhhhhhcCC-CCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 5 YVRAIITSFKKNSF-PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
+...++..+++.|. +++.. ..+..+|........++.+++.+.+.|...+..|.-..++.+ ...|-+.
T Consensus 4 ~~~~~~~~lk~~glr~T~qR----~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l-~e~Glv~ 72 (145)
T COG0735 4 TLEDAIERLKEAGLRLTPQR----LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL-EEAGLVH 72 (145)
T ss_pred hHHHHHHHHHHcCCCcCHHH----HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH-HHCCCEE
Confidence 34455566666665 33333 477888888877799999999999999999998888888999 8887543
No 296
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.94 E-value=35 Score=20.11 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=29.3
Q ss_pred HhhccChhhHHHHHHHHHHhccCcchhHHHHHHHH
Q 044412 34 LKKCSSIKELECVYATIVKTNANLDCFLAKQFISF 68 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~ 68 (311)
....|-..+++.+.+.|.+.|+..++..+..++..
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34556677889999999999999999999988864
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=58.34 E-value=76 Score=23.75 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
....+.-++.+...|+-+.-.+++.++.+ +-+|++...-.+-.||.+.|+.+++..++..
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34456667777788888888888888765 4578999999999999999999977666544
No 298
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.80 E-value=52 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=18.7
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.|+..+|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666666655554
No 299
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.52 E-value=36 Score=28.51 Aligned_cols=95 Identities=9% Similarity=0.120 Sum_probs=61.2
Q ss_pred eec---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC
Q 044412 94 YHA---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 94 ~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
|+. +.+.|++..|...|....+..= +.-..|+..-| |-.++...|+.++ |...|..+.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP----------~s~~~~nA~yW--LGe~~y~qg~y~~----Aa~~f~~~~k-- 206 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYP----------NSTYTPNAYYW--LGESLYAQGDYED----AAYIFARVVK-- 206 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC----------CCcccchhHHH--HHHHHHhcccchH----HHHHHHHHHH--
Confidence 655 7888899999999998876530 01123333322 6788899999999 6665554322
Q ss_pred HhHHHHHHHHHHHHHHHHHhhCCC-C-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 044412 171 FATWNTMIDAYARLAELLFNKMPA-W-DIRSWTTMITSYSQNKQFREALDAFNKTKKS 226 (311)
Q Consensus 171 ~~~~~~li~~~~~~a~~~~~~m~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (311)
+.++ | -....--|-.+..+.|+.++|..+|++..+.
T Consensus 207 --------------------~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 207 --------------------DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred --------------------hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1111 1 1223334556677889999999999998774
No 300
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.27 E-value=74 Score=26.06 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHH----HHHHHhhCCCCcHh-HHH-HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 044412 173 TWNTMIDAYARL----AELLFNKMPAWDIR-SWT-TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 173 ~~~~li~~~~~~----a~~~~~~m~~~~~~-~y~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~ 246 (311)
.|...+.|+... -.+-++.+.+|++. +|. -+|..+...|+.+.|+.+++.+.-..-.+ .....++.+ ..++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcC
Confidence 456667777654 33333444455432 222 47788888899999998888865322222 223333333 3445
Q ss_pred ChhhHHHH
Q 044412 247 ALDLGRGI 254 (311)
Q Consensus 247 ~~~~a~~~ 254 (311)
.+.+|..+
T Consensus 155 ~v~EAf~~ 162 (226)
T PF13934_consen 155 LVTEAFSF 162 (226)
T ss_pred CHHHHHHH
Confidence 66655444
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.25 E-value=27 Score=18.15 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
+|..+-..|...|+.++|.+.|++-.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677788889999999999988654
No 302
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=56.64 E-value=1.2e+02 Score=25.40 Aligned_cols=145 Identities=13% Similarity=0.126 Sum_probs=91.5
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
-.+.|++++|.+.|+.+..+-. +-+....+---++-++-+.++.+.|...+.++...-+...-.-|..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHP------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCC------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3478999999999999876521 1122345555677788999999997776666666666544445555
Q ss_pred HHHHHHHH------------HHHHHhhC-------CC----CcHh----------H-HHH-HHHHHHhCCChhHHHHHHH
Q 044412 177 MIDAYARL------------AELLFNKM-------PA----WDIR----------S-WTT-MITSYSQNKQFREALDAFN 221 (311)
Q Consensus 177 li~~~~~~------------a~~~~~~m-------~~----~~~~----------~-y~~-li~~~~~~g~~~~a~~~~~ 221 (311)
-|.+++.- +.+-|..+ +. ||.. . ++- +-+-|.+.|.+.-|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 55555542 33333222 21 2221 1 222 3355788899999999999
Q ss_pred HHHhcCCCCC---HHHHHHHHHHHhccCChhhHHHH
Q 044412 222 KTKKSGTGSD---QVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 222 ~m~~~g~~p~---~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
+|.+. .+-+ ...+-.+..+|-..|..++|.+.
T Consensus 192 ~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 192 EVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99886 2222 23566677888888888766543
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.98 E-value=31 Score=27.07 Aligned_cols=122 Identities=9% Similarity=-0.032 Sum_probs=57.3
Q ss_pred HHHHHHHhh--ccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCe--------eeeec-
Q 044412 28 HIIANQLKK--CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV--------FVYHA- 96 (311)
Q Consensus 28 ~~~~~~l~~--~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~--------~~~~~- 96 (311)
..|...|+. -++..++..-|..+.+.|...-+..-..-+.......|+...|...|+++-.-.. .-..+
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 345555442 2445555555666666555433332221111111555666666666665532111 00111
Q ss_pred --cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC
Q 044412 97 --FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167 (311)
Q Consensus 97 --~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~ 167 (311)
+..+|.+++.....+.+...+ -+.-...-.+|--+-.+.|++.+ |.+.|..+-
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~--------------n~mR~sArEALglAa~kagd~a~----A~~~F~qia 194 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDG--------------NPMRHSAREALGLAAYKAGDFAK----AKSWFVQIA 194 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCC--------------ChhHHHHHHHHhHHHHhccchHH----HHHHHHHHH
Confidence 445555555555444443222 11112223344445678889999 777776643
No 304
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.95 E-value=1.4e+02 Score=29.22 Aligned_cols=92 Identities=8% Similarity=-0.034 Sum_probs=54.1
Q ss_pred hHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhh---C--ChHHHHHHHhhcCCCCchhHHHHHHHHH
Q 044412 214 REALDAFNKT-KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC---R--SLGRSLLVFFKLREKNLLCWNSITEALA 287 (311)
Q Consensus 214 ~~a~~~~~~m-~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~---~--~~~~a~~~~~~~~~p~~~~~~~li~~~~ 287 (311)
++....+... .+.|+..+......|+... .|++..+..+++.. + .+. ...+..-+...+......|++++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It-~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVA-ENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcC-HHHHHHHHcccCHHHHHHHHHHHH
Confidence 3333444333 3457777777776666554 47777777666541 1 111 111111122345455666777776
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 044412 288 IHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~~g~~P 309 (311)
. ++...++.++++|...|+.+
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCH
Confidence 6 88999999999999888764
No 305
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.82 E-value=53 Score=25.96 Aligned_cols=48 Identities=13% Similarity=-0.056 Sum_probs=32.7
Q ss_pred hCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 209 QNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 209 ~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
...+.+......+-..+ ....|+..+|..++.++...|+.++|++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~ 168 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLA 168 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555444444444333 3468999999999999999999998876653
No 306
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.70 E-value=56 Score=26.75 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
|+.+.+.+.+++|+.+.++=.+.. +-|..+=..+++.+|-.|++++|..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHH
Confidence 344444444555554444433321 1223333344444555555554443
No 307
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.35 E-value=1.8e+02 Score=27.04 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=46.2
Q ss_pred cCCCCCHHHHHHHHHHHhccCChhhHHHHHHhh-----CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044412 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIYC-----RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300 (311)
Q Consensus 226 ~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~-----~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 300 (311)
.|+..+......+.. ...|+++.|..+++.+ +.+. ...+.+-+.-.+...+..++++....+....|+.+++
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it-~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~ 272 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLT-GVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILE 272 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcC-HHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 556555555554443 2346666666665541 1111 1111111223455566777777776666778999999
Q ss_pred HHHHcCCCC
Q 044412 301 RMTYENVRP 309 (311)
Q Consensus 301 ~M~~~g~~P 309 (311)
+|.+.|..|
T Consensus 273 ~l~~~G~d~ 281 (484)
T PRK14956 273 SLYQEGQDI 281 (484)
T ss_pred HHHHcCCCH
Confidence 999888765
No 308
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.97 E-value=2.7e+02 Score=28.44 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHhhCC-CC-cHhHHHHHHHHHHhCC--ChhHHHHHHHHHHhc
Q 044412 186 ELLFNKMP-AW-DIRSWTTMITSYSQNK--QFREALDAFNKTKKS 226 (311)
Q Consensus 186 ~~~~~~m~-~~-~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~ 226 (311)
..+.+.|. .. ...-...+|++|++.+ ++++|+.+..++++.
T Consensus 799 dair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 799 DAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 33444443 22 3445778999999998 899999999999876
No 309
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=52.85 E-value=1.2e+02 Score=24.23 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=92.1
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
....|++.+|.+.|+.+...-- +-+.-....-.+..++-+.|+++.|.....++.+.-+......+..
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYP------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-T------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 3478999999999999876420 0112233445677889999999996666666666655544445555
Q ss_pred HHHHHHHH--HHHHHhhCCCCc-------HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 044412 177 MIDAYARL--AELLFNKMPAWD-------IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247 (311)
Q Consensus 177 li~~~~~~--a~~~~~~m~~~~-------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~ 247 (311)
.+.+.+.. ....+ ...+| ...+..+|.-|-.+....+|...+.++... .-..- -.+..-|.+.|.
T Consensus 83 Y~~g~~~~~~~~~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 83 YMLGLSYYKQIPGIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-
T ss_pred HHHHHHHHHhCccch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHccc
Confidence 55544432 33322 11121 235777777777777777777666665431 00111 113344666666
Q ss_pred hhhHHHHHHhhCChHHHHHHHhhcC--CCCc----hhHHHHHHHHHhcCChHHHH
Q 044412 248 LDLGRGIQIYCRSLGRSLLVFFKLR--EKNL----LCWNSITEALAIHGFAHEAL 296 (311)
Q Consensus 248 ~~~a~~~~~~~~~~~~a~~~~~~~~--~p~~----~~~~~li~~~~~~g~~~~a~ 296 (311)
+..|.. -|+.+. -|+. ...-.|+.+|.+.|..+.|.
T Consensus 157 y~aA~~-------------r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 157 YKAAII-------------RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH-------------HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH-------------HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 664433 333322 1333 35577888888888877543
No 310
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=52.67 E-value=33 Score=23.25 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 43 ~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
-.++|+.....|+..|+.+|..+++.. .-.-..+...+++..|.
T Consensus 27 E~EL~ELa~~AGv~~dp~VFriildLL-~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 27 EVELYELAQLAGVPMDPEVFRIILDLL-RLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHHhCCCcChHHHHHHHHHH-HcCCCHHHHHHHHHHHH
Confidence 359999999999999999999999998 76667777788877774
No 311
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.61 E-value=1.9e+02 Score=27.01 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=51.4
Q ss_pred hHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChH---HHHHHHhhcCCCCchhHHHHHHHHHhc
Q 044412 214 REALDAFNKT-KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG---RSLLVFFKLREKNLLCWNSITEALAIH 289 (311)
Q Consensus 214 ~~a~~~~~~m-~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~---~a~~~~~~~~~p~~~~~~~li~~~~~~ 289 (311)
++..+.+... .+.|+..+......++... .|++..+...++.+-..+ ....+.+-...+.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 3334444432 3456666666655555433 366666655544411000 111122222244455566667776 45
Q ss_pred CChHHHHHHHHHHHHcCCCC
Q 044412 290 GFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 290 g~~~~a~~~~~~M~~~g~~P 309 (311)
++..+|+.+++++...|..|
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 89999999999999988766
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=52.56 E-value=1.5e+02 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=43.0
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
....+|..+...+-+.|.++-|...+..+...+..+ ++...-.-.+.....|+-..|...++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456689999999999999999999999988754211 223333334445566777767665544
No 313
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.53 E-value=90 Score=22.84 Aligned_cols=42 Identities=2% Similarity=0.104 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhccCcch-hHHHHHHHHHhhccCChhHHHHhcc
Q 044412 42 ELECVYATIVKTNANLDC-FLAKQFISFCTSRFHFIDYTILVFP 84 (311)
Q Consensus 42 ~~~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~ 84 (311)
+...+|..|.+.|+--.. ..|..--..+ .+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~l-e~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFL-EKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHH-HHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 778999999998875544 4556666666 88899999998875
No 314
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=52.27 E-value=1e+02 Score=23.27 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCChhhHHHH
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSG--TGSDQVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
...|+.-..++ +.|++++|.+.|+.+...= -+-....--.|+.+|-+.++++.|...
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~ 69 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA 69 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555554 5588999999888887641 122345566788888888888877653
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.51 E-value=74 Score=26.06 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~ 218 (311)
.+..++.+.+.+.+++|+..++.-.+.-+ .|...-..++.-+|-.|++++|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP---------------------------tda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP---------------------------TDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC---------------------------ccccchhHHHHHHhhcchHHHHHH
Confidence 34456667777777775555555544411 144556678899999999999986
Q ss_pred HHHHHHh--cCCCCCHHHHHHHHHH
Q 044412 219 AFNKTKK--SGTGSDQVTMATVLSA 241 (311)
Q Consensus 219 ~~~~m~~--~g~~p~~~t~~~li~a 241 (311)
=++-.-+ ....+-..+|..+|.+
T Consensus 57 Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 57 QLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHH
Confidence 6555433 2345556677777764
No 316
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.98 E-value=2.2e+02 Score=26.75 Aligned_cols=84 Identities=18% Similarity=0.060 Sum_probs=51.6
Q ss_pred HhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---hCChHH-HHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044412 224 KKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---CRSLGR-SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299 (311)
Q Consensus 224 ~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---~~~~~~-a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 299 (311)
.+.|+..+......++... .|++..|..+++. .|.-.. ...+.+-...++....-.|++++.. |+.+.++.++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 4467777766666665543 4777777776654 111111 1122222224555566667777665 8899999999
Q ss_pred HHHHHcCCCCC
Q 044412 300 DRMTYENVRPN 310 (311)
Q Consensus 300 ~~M~~~g~~P~ 310 (311)
++|...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 99999888763
No 317
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.22 E-value=47 Score=23.86 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
..+..++......-.++++++.+.+.|...+..|.-.-|+.+ .+.|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L-~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLL-EEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH-HHCCeEEE
Confidence 467788888888888999999999999999999888888888 88886554
No 318
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.80 E-value=49 Score=23.52 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
.++..+...+..-.|.++++.+.+.+..++..|..-.|+.+...|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4566666777788999999999999888899998888899999887763
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.44 E-value=31 Score=16.55 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|..+-..+...|++++|...+....+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567778888899999999999988764
No 320
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.09 E-value=1.6e+02 Score=24.69 Aligned_cols=211 Identities=12% Similarity=0.048 Sum_probs=106.5
Q ss_pred cCcch----hHHHHHHHHHhhccCChhHHHHhcccCC---CCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHH
Q 044412 55 ANLDC----FLAKQFISFCTSRFHFIDYTILVFPQMQ---EPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 55 ~~p~~----~~~~~ll~~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
+.||- ..|..--.+| ....++++|...+.+.. +.|...|+ -...+++|.-+.++|..
T Consensus 23 wkad~dgaas~yekAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfh---AAKayEqaamLake~~k------------ 86 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFH---AAKAYEQAAMLAKELSK------------ 86 (308)
T ss_pred cCCCchhhHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHH------------
Confidence 45665 3555556677 77888888877665543 23332222 33445677777777743
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCCccchH---HHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCC--CcHhHHHH
Q 044412 128 WKNGFSSPVFVQTAMVDNYSYSNKFFESRR---VSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA--WDIRSWTT 202 (311)
Q Consensus 128 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~---~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~--~~~~~y~~ 202 (311)
+.--+..|+--...|..+|..+-|-. -|-++++.. .|+-. |.-|- .+..++++-.. .-...|..
T Consensus 87 ----lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv-~Pd~A-----lqlYq-ralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 87 ----LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENV-KPDDA-----LQLYQ-RALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred ----hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC-CHHHH-----HHHHH-HHHHHHhccchHHHHHHHHHH
Confidence 22335578888899999999988221 122222221 12220 00000 02222221111 01233555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCch
Q 044412 203 MITSYSQNKQFREALDAFNKTKKS----GTGSDQ-VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLL 277 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~ 277 (311)
.-..+.+..++++|-..|.+-... .--|+. ..|-..|-.+....++..|+.+++.+-.++.-. ..-+..
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~------~sed~r 229 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL------KSEDSR 229 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc------ChHHHH
Confidence 555666666666665544432211 112222 235555555666667776666554421111100 012556
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 044412 278 CWNSITEALAIHGFAHEALGMF 299 (311)
Q Consensus 278 ~~~~li~~~~~~g~~~~a~~~~ 299 (311)
+...||.+|- .|+.+++.+++
T Consensus 230 ~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 230 SLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhc-cCCHHHHHHHH
Confidence 7788887774 47777765543
No 321
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=48.99 E-value=47 Score=30.96 Aligned_cols=94 Identities=7% Similarity=-0.006 Sum_probs=64.0
Q ss_pred HHHHhhccChhhH--------HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec----
Q 044412 31 ANQLKKCSSIKEL--------ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA---- 96 (311)
Q Consensus 31 ~~~l~~~~~~~~~--------~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~---- 96 (311)
..++.+|.++..- ..+-....+.|+..+......+.++. .|...++..+++++.. .+.++...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a---~Gs~RDalslLDq~i~~~~~~It~~~v~~~ 240 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA---EGSLRDALSLLDQAIAFGEGEITLESVRDM 240 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc---CCChhhHHHHHHHHHHccCCcccHHHHHHH
Confidence 4556666644333 23334445778888888888877754 7888999999988753 23344332
Q ss_pred --------------cccCCChhHHHHHHHHHHHCCCCchHHHHHH
Q 044412 97 --------------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 97 --------------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
....++.++++..++++.+.|..|..++.++
T Consensus 241 lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl 285 (515)
T COG2812 241 LGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDL 285 (515)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5567889999999999999887777444443
No 322
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=48.72 E-value=1.4e+02 Score=26.61 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=38.2
Q ss_pred CCCchhhhHHHHHHHHhhccChhhH---HHHHHHHHHhc---cCcchhHHHHHHHHHhhc---cCChhHHHHhcccC
Q 044412 19 PTSVSFIRIHIIANQLKKCSSIKEL---ECVYATIVKTN---ANLDCFLAKQFISFCTSR---FHFIDYTILVFPQM 86 (311)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~l~~~m~~~g---~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~m 86 (311)
.+.+..++..+++.++-++...++- .++.+.+...- +.-...+--...-++ -| .|+-++|++++..+
T Consensus 133 Ld~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafAL-nRrn~~gdre~Al~il~~~ 208 (374)
T PF13281_consen 133 LDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFAL-NRRNKPGDREKALQILLPV 208 (374)
T ss_pred hCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHH-hhcccCCCHHHHHHHHHHH
Confidence 4445555666777777776666655 45555554431 111222222333444 56 89999999998773
No 323
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=48.48 E-value=71 Score=27.89 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=36.8
Q ss_pred hCChHHHHHHHhhcC-------CCCchhH--HHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC
Q 044412 258 CRSLGRSLLVFFKLR-------EKNLLCW--NSITEALAIHGFAHEALGMFDRMTY-----ENVRPN 310 (311)
Q Consensus 258 ~~~~~~a~~~~~~~~-------~p~~~~~--~~li~~~~~~g~~~~a~~~~~~M~~-----~g~~P~ 310 (311)
+++.++|.++++++. +|+...| ..+.+.+...|+.+++.+++++.++ .|++|+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~ 154 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN 154 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh
Confidence 334445555555544 6776554 5566777789999999999999887 677764
No 324
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.36 E-value=1.7e+02 Score=28.21 Aligned_cols=92 Identities=10% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHHHHH-HHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---hCChHHHHHHHhhcC-CCCchhHHHHHHHHHhc
Q 044412 215 EALDAFNK-TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---CRSLGRSLLVFFKLR-EKNLLCWNSITEALAIH 289 (311)
Q Consensus 215 ~a~~~~~~-m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---~~~~~~a~~~~~~~~-~p~~~~~~~li~~~~~~ 289 (311)
+..+.+.. +.+.|+..+......|+.. ..|++..+..++++ .+.-.......++|. ..+......+++++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 33344433 3456777777777666653 34677777766543 111111112222222 3444555566666665
Q ss_pred CChHHHHHHHHHHHHcCCCC
Q 044412 290 GFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 290 g~~~~a~~~~~~M~~~g~~P 309 (311)
|+...++.++++|.+.|..|
T Consensus 264 ~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 78889999999998888765
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.95 E-value=3e+02 Score=27.55 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=38.4
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc---hhHHHHHHHH-HHhCCCCccchHHHHHHhccCCC
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP---VFVQTAMVDN-YSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~---~~~~~~ll~~-~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
.....++.+|..++.+....--.| +..+. ...++.|=.- ....|++++|..+++....+.++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~----------~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAP----------MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcC----------cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 667788999999998876542111 11122 1234444332 23447889988888888887765
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.94 E-value=61 Score=21.63 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHhccCChhhHHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGS-DQ-VTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~-~t~~~li~a~~~~~~~~~a~~~ 254 (311)
+..| ...+-++|+..|....+.-..| +. .++..|+.+|+.-|+++++.++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5678899999999987754433 32 4788999999999999877655
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=46.93 E-value=2.2e+02 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.038 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
...+...++..|..|+|+.|+++++.-+.
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 35789999999999999999999987654
No 328
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=46.86 E-value=31 Score=22.56 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=31.8
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 044412 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGA 247 (311)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~ 247 (311)
-.|+.+++.+++++..+.|..|.......+..+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999998888888877766553
No 329
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.66 E-value=74 Score=22.57 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
.+..++....+.-.+.++++.+.+.|..++..|.-..|+.+ .+.|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L-~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELL-EEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhCCCEEE
Confidence 45666766677778899999999999889999999999999 88886554
No 330
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=46.62 E-value=2.5e+02 Score=27.96 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=48.2
Q ss_pred hHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---h--CChHHHHHHHhhcCCCCchhHHHHHHHHH
Q 044412 214 REALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQIY---C--RSLGRSLLVFFKLREKNLLCWNSITEALA 287 (311)
Q Consensus 214 ~~a~~~~~~m~-~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~---~--~~~~~a~~~~~~~~~p~~~~~~~li~~~~ 287 (311)
++..+.+++.. +.|+..+......|.+. ..|++..+..++++ . +.+. ...+.+.+...|......+++++.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It-~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVT-ETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcC-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444432 34566565555554432 24566666665543 1 1111 111212222455555666666555
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 044412 288 IHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~~g~~P 309 (311)
. |+..+++.+++++...|+.+
T Consensus 258 ~-~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 258 A-GDGPEILAVADEMALRSLSF 278 (830)
T ss_pred c-CCHHHHHHHHHHHHHhCCCH
Confidence 4 78888888888888777643
No 331
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.05 E-value=1.9e+02 Score=24.73 Aligned_cols=109 Identities=9% Similarity=0.078 Sum_probs=70.9
Q ss_pred HHHHHhhCCC-----CcHhHHHHHHHHHHh-CCC-hhHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 185 AELLFNKMPA-----WDIRSWTTMITSYSQ-NKQ-FREALDAFNKTK-KSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 185 a~~~~~~m~~-----~~~~~y~~li~~~~~-~g~-~~~a~~~~~~m~-~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
|.++|+.... .|..+-.-+++.... .+. ...-.++.+-+. ..|-.++..+...+|..++..+++..-.++++
T Consensus 147 aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~ 226 (292)
T PF13929_consen 147 ALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWE 226 (292)
T ss_pred HHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHH
Confidence 6677773321 355555556655555 222 222223333333 34578889999999999999999997777776
Q ss_pred hhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 257 ~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
.++.... ...|...|..+|+.....|+..-...+.++
T Consensus 227 ~~~~~~~--------~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 227 QCIPNSV--------PGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HhcccCC--------CCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 6444311 135889999999999999998776665543
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.79 E-value=67 Score=19.45 Aligned_cols=37 Identities=5% Similarity=0.018 Sum_probs=27.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044412 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA 241 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 241 (311)
+--|+.+.|++++|.+..+.+.+ ++|+-.-...|-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 34577899999999999999988 58887766665544
No 333
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=45.25 E-value=1.9e+02 Score=24.44 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh--------cCCCCCH-----HHHHHHHHHHhccCChhhHHHHHHhhCChHHH
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKK--------SGTGSDQ-----VTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~-----~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a 264 (311)
..||+-.+.+.+..++++|...+++-.+ ....|+. .+...|+.+|...+..+...+ |
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k----------a 106 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK----------A 106 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH----------H
Confidence 4577666666555366666555544222 1344544 577888889988887775544 3
Q ss_pred HHHHhhcC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 265 LLVFFKLR--EKN-LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 265 ~~~~~~~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..+.+.+. -|+ +.+|-.=++.+.+.++.+++.+.+.+|...
T Consensus 107 ~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 107 LNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 33333332 233 344445555555566666777777766653
No 334
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=44.89 E-value=91 Score=28.84 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=41.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 203 MITSYSQNKQFREALDAFNKTKKSGTG-SDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+-.+.-+.|+.++|++.|++|.+..-. -.......||.++...+...++..++..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445555679999999999999875311 1334677899999999999988777644
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.18 E-value=1.5e+02 Score=22.89 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHHHHhhCC--CCc---HhHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 044412 185 AELLFNKMP--AWD---IRSWTTMITSYSQNKQFREALDAFNKTKKS 226 (311)
Q Consensus 185 a~~~~~~m~--~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (311)
++.+++.+. .|. ..++-.++. ...|++.+|.++|+++...
T Consensus 29 ~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 29 AEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhcc
Confidence 555555553 232 334443333 4567777777777776543
No 336
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.10 E-value=1.7e+02 Score=28.31 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCChhhHH
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKS--GTGSDQVTMATVLSACAHLGALDLGR 252 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~a~~~~~~~~~a~ 252 (311)
+|+.+|...|++..+..+++.+... |-+.-...||.-|+.+.+.|.++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~ 85 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTD 85 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHH
Confidence 6777888888888888888777653 33334456777777777777766443
No 337
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.70 E-value=1.4e+02 Score=23.13 Aligned_cols=51 Identities=4% Similarity=-0.063 Sum_probs=41.9
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHH
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYT 79 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a 79 (311)
..+..++....+.-.+++|++.+.+.|..++..|.-..|+.+ .+.|-+...
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L-~e~Glv~~~ 79 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFL-LEQGFVHKV 79 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHH-HHCCCEEEE
Confidence 366777777777888899999999999999999988889999 888865543
No 338
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.73 E-value=3.5e+02 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 044412 288 IHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~~g~~P 309 (311)
+.++++.|..++.+|.+.|..|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp 291 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDP 291 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCH
Confidence 4588999999999999999766
No 339
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.71 E-value=76 Score=25.37 Aligned_cols=113 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCcc-chHHHHHHhccCCCCCHhHHHHHHHHHHHH------HHHHHhhCCCCcHhHHHHHHHHHHhC
Q 044412 138 VQTAMVDNYSYSNKFFE-SRRVSRRLFDEMPERKFATWNTMIDAYARL------AELLFNKMPAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~-a~~~a~~~~~~~~~~~~~~~~~li~~~~~~------a~~~~~~m~~~~~~~y~~li~~~~~~ 210 (311)
.|-++=.++-+.+++.. .-.+|..+.++-++...+.|...-.+-++. ...++.+..- +++-.|-+.
T Consensus 73 ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGi-------S~m~~Yhk~ 145 (233)
T PF14669_consen 73 LYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGI-------SLMYSYHKT 145 (233)
T ss_pred HHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHH-------HHHHHHHHH
Q ss_pred CChhHHHHHHHHHHhc--------------CCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 211 KQFREALDAFNKTKKS--------------GTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~--------------g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
-++.++.++++.|.+. +..+-....|....-|.+.|.++.|..++++
T Consensus 146 ~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 146 LQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 340
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=41.57 E-value=1.1e+02 Score=24.93 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=49.9
Q ss_pred CcchhHHHHHHHHHhhccC----ChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 56 NLDCFLAKQFISFCTSRFH----FIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 56 ~p~~~~~~~ll~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
.-+..|+..||..+ -+.. ++.+-.++|+.+ .++....+-|+.=..--+..+++.+.+...|
T Consensus 90 ~Fs~~TcrlmI~mf-d~~~~G~i~f~EF~~Lw~~i--------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G 154 (221)
T KOG0037|consen 90 PFSIETCRLMISMF-DRDNSGTIGFKEFKALWKYI--------------NQWRNVFRTYDRDRSGTIDSSELRQALTQLG 154 (221)
T ss_pred CCCHHHHHHHHHHh-cCCCCCccCHHHHHHHHHHH--------------HHHHHHHHhcccCCCCcccHHHHHHHHHHcC
Confidence 45788999999988 5543 344444444333 1222222222211111234447777788889
Q ss_pred CCCchhHHHHHHHHHHhCC
Q 044412 132 FSSPVFVQTAMVDNYSYSN 150 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g 150 (311)
+..+.++++.|++-|.+.+
T Consensus 155 y~Lspq~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 155 YRLSPQFYNLLVRKYDRFG 173 (221)
T ss_pred cCCCHHHHHHHHHHhcccc
Confidence 9999999999999999775
No 341
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.46 E-value=99 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999999987
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.23 E-value=1.9e+02 Score=23.30 Aligned_cols=76 Identities=12% Similarity=-0.036 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChH
Q 044412 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAH 293 (311)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 293 (311)
+.|.+.|-.+...+.--|+..-..|-.-|. ..+.+++..++. .+..+.+.-.++|+..+..|...+-+.|+.+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~------~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLL------RALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHH------HHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 567777777776665555555555555444 455555555432 2222222222567777777777777777777
Q ss_pred HHH
Q 044412 294 EAL 296 (311)
Q Consensus 294 ~a~ 296 (311)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 343
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.21 E-value=51 Score=23.68 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
..+++.+...+..-.|.++++.|.+.|...+..|.---|+.+...|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 35677777777789999999999999999999887777888888886653
No 344
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.19 E-value=1.3e+02 Score=22.60 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=39.9
Q ss_pred HHHHHHHhh-ccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 28 HIIANQLKK-CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 28 ~~~~~~l~~-~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
..+..+|.. ....-.+.++++.+.+.+...+..|.-..|+.+ .+.|-+.
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L-~e~Gli~ 69 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF-DDAGIVT 69 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHCCCEE
Confidence 356666665 457889999999999999888999988889999 8888654
No 345
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=2.4e+02 Score=24.27 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=63.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHhccCChhhHHHHHHh----------hCChHHHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGSDQV-------TMATVLSACAHLGALDLGRGIQIY----------CRSLGRSLL 266 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~li~a~~~~~~~~~a~~~~~~----------~~~~~~a~~ 266 (311)
-+...+.+++++|+.++.+....|+..|.. |..-+.+.|.+.|+.....+.... .+-.+....
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344566789999999999999999877653 555677888888887666555444 111222233
Q ss_pred HHhhcC-CCCc-------------------------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 267 VFFKLR-EKNL-------------------------LCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 267 ~~~~~~-~p~~-------------------------~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
+|++.+ .||. ..=.-+|..+.+.|.+.+|+.+....
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444444 2221 11244677888899999988766554
No 346
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=40.35 E-value=2.4e+02 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P 309 (311)
+...|. ++++... |+..+|..+++++...|..|
T Consensus 200 ~~~if~-l~dai~~-~~~~~A~~~l~~L~~~g~~p 232 (326)
T PRK07452 200 TQNSLQ-LADALLQ-GNTGKALALLDDLLDANEPA 232 (326)
T ss_pred cCcHHH-HHHHHHC-CCHHHHHHHHHHHHHCCCcH
Confidence 344565 6666665 88888888888888877765
No 347
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.33 E-value=2.9e+02 Score=25.22 Aligned_cols=43 Identities=7% Similarity=-0.075 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCchhH--HHHHHHHHHhCCCCccchHHHHHHhccCCCC
Q 044412 123 VHGQVWKNGFSSPVFV--QTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169 (311)
Q Consensus 123 ~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~ 169 (311)
+.+.+.+.|..++... -.+.+...+..|+.+- +..+++.+..+
T Consensus 158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i----v~~Ll~~ga~~ 202 (480)
T PHA03100 158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV----IKFLLDNGADI 202 (480)
T ss_pred HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH----HHHHHHcCCCc
Confidence 3444455555544321 1234556666666666 66666666543
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.25 E-value=2.4e+02 Score=25.57 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 233 VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 233 ~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
++...|++.++-.||+..|.++.+...--.. .+|.+...-.+.+|-.+--+|.-.+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~--~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKK--GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccc--hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888777766554332222 24444445567778888888888888888888887653
No 349
>PHA02878 ankyrin repeat protein; Provisional
Probab=39.80 E-value=3e+02 Score=25.26 Aligned_cols=178 Identities=8% Similarity=-0.023 Sum_probs=86.3
Q ss_pred HHHHHHHHhccCcch---hHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec-----cccCCChhHHHHHHHHHHHC
Q 044412 45 CVYATIVKTNANLDC---FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA-----FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~~~~~~a~~~~~~m~~~ 116 (311)
++.+.+++.|..++. .-.+.|.-+ +..|+.+.+..+++.....+. .+.. .+..++.+-+..++..-...
T Consensus 51 e~vk~Ll~~gadvn~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~~~~~~~-~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~ 127 (477)
T PHA02878 51 DVVKSLLTRGHNVNQPDHRDLTPLHII--CKEPNKLGMKEMIRSINKCSV-FYTLVAIKDAFNNRNVEIFKIILTNRYKN 127 (477)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHH--HHCccHhHHHHHHHHHhcccc-ccchhhHHHHHHcCCHHHHHHHHhCcccC
Confidence 444556667765543 233444433 567787777777766543332 2221 33344444333333220000
Q ss_pred CCCch---------------HHHHHHHHhcCCCchhH---HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh---HHH
Q 044412 117 EVLLT---------------TVHGQVWKNGFSSPVFV---QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA---TWN 175 (311)
Q Consensus 117 ~~~p~---------------~~~~~~~~~g~~~~~~~---~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~---~~~ 175 (311)
....+ ++.+.+.+.|..++... -.+.|...+..|+.+- ++.+++.+..++.. -.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~i----v~~Ll~~gad~n~~d~~g~t 203 (477)
T PHA02878 128 IQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRL----TELLLSYGANVNIPDKTNNS 203 (477)
T ss_pred cccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHH----HHHHHHCCCCCCCcCCCCCC
Confidence 00000 36667777777776443 2356666778888777 77777766554321 222
Q ss_pred HHHHHHHHH----HHHHHhhCCCC---cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 044412 176 TMIDAYARL----AELLFNKMPAW---DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233 (311)
Q Consensus 176 ~li~~~~~~----a~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 233 (311)
.+..+.... .+.+++.-.++ |..-.+.+.-+....+.. ++.+.+.+.|..++..
T Consensus 204 pLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~----~iv~~Ll~~gadvn~~ 264 (477)
T PHA02878 204 PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDY----DILKLLLEHGVDVNAK 264 (477)
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCH----HHHHHHHHcCCCCCcc
Confidence 232222221 44444433332 223344444444333433 3444455667766654
No 350
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=1.7e+02 Score=26.19 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CC
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EK 274 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p 274 (311)
..+++.+.-++.+.+++.+|+..-..-+..+ ++|. .|+-|.|+.-.+ .++.+.|+..|+++. +|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~-------KALyRrG~A~l~------~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV-------KALYRRGQALLA------LGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch-------hHHHHHHHHHHh------hccHHHHHHHHHHHHHhCC
Confidence 3467778888888888888888877776542 2222 233333322222 455556666666665 56
Q ss_pred CchhH-HHHHHHHHhcCChHH-HHHHHHHHHH
Q 044412 275 NLLCW-NSITEALAIHGFAHE-ALGMFDRMTY 304 (311)
Q Consensus 275 ~~~~~-~~li~~~~~~g~~~~-a~~~~~~M~~ 304 (311)
+-..- +-++..--+..+..+ ..++|..|-.
T Consensus 323 ~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54444 444444445555544 3678888864
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.97 E-value=27 Score=29.05 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=42.8
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcC-CCchhHHHHHHHHHHhCCCCccchHHHHHHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLF 163 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~ 163 (311)
|.+.|++++|+++|+.+... -.+.|+ .+...+...+..++.+.|+.+....+..++.
T Consensus 188 y~~~g~~~~A~~~l~~~~~~----------yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPAASS----------YRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHCCCHHHHHHHHHHHHHH----------HHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 88999999999999987431 123333 5567788889999999999999666655554
No 352
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.83 E-value=3.9e+02 Score=26.25 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=35.4
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHhhCChH
Q 044412 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT--GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG 262 (311)
Q Consensus 185 a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~ 262 (311)
|++++-++..+|.. |..+-+.|++-.+.++++.=- .+. +--...|+.+-..++....++.|.+.+..+++.+
T Consensus 753 aek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 753 AEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred hhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 77777777666543 444555555555544443210 000 0012345555555555555555555555544433
No 353
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=38.62 E-value=1.3e+02 Score=26.16 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCC--------------eeeeec------cccCCCh
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN--------------VFVYHA------FSSLRHP 103 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~~------~~~~~~~ 103 (311)
..+-..-.+.|+..|...+..+++.. .|++..|..++++...-. ++.... .+..++.
T Consensus 195 ~rL~~Ia~~E~v~~d~~al~~I~~~S---~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~ 271 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDALKLIAKIS---DGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADT 271 (346)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHc---CCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccCh
Confidence 44555566889999999999999865 799999999999886311 111111 6677777
Q ss_pred hHHHHHHHHHHHCCCCchHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQ 126 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~ 126 (311)
.+..+..+++.+.|..|-++..+
T Consensus 272 ~~~v~~~Rei~~sg~~~~~lmsQ 294 (346)
T KOG0989|consen 272 PNTVKRVREIMRSGYSPLQLMSQ 294 (346)
T ss_pred HHHHHHHHHHHHhccCHHHHHHH
Confidence 77777777777777766633333
No 354
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.92 E-value=87 Score=23.59 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
-.+++.+...++.-.|.++++++.+.|...+..|...-++.+...|-+.
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3667788888788999999999999988888888777788888888665
No 355
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=37.31 E-value=1.5e+02 Score=26.75 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=36.4
Q ss_pred HHHhCCChhHHHHHHHHHHh---cCCCCCHHHHHHHHHHHhccCChhhHHH
Q 044412 206 SYSQNKQFREALDAFNKTKK---SGTGSDQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
-..+.|++.+|.+.|.+-+. .++.|+...|...-.+..+.|+.++|..
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence 34567999999999999875 3466677777777777788888887754
No 356
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.07 E-value=3.9e+02 Score=25.77 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=46.2
Q ss_pred hcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhh----CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044412 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC----RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300 (311)
Q Consensus 225 ~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~----~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 300 (311)
+.|+..+......++... .|++..|...++.. +.--....+.+.+...+...+-.|+++... |+..+|+.+++
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~~-~~~~~al~ll~ 271 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALLA-GKVSDSLLLFD 271 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 456666666555555433 46666666655441 110011122233334444555556665554 68888999999
Q ss_pred HHHHcCCCC
Q 044412 301 RMTYENVRP 309 (311)
Q Consensus 301 ~M~~~g~~P 309 (311)
++...|..|
T Consensus 272 ~Ll~~g~~~ 280 (614)
T PRK14971 272 EILNKGFDG 280 (614)
T ss_pred HHHHcCCCH
Confidence 988888765
No 357
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=36.45 E-value=4.6e+02 Score=26.40 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=25.7
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD 231 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 231 (311)
.+......+++++. .++...++.+++++.+.|..|-
T Consensus 246 ~~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 246 TDSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 34444556667665 4788899999999988887654
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.18 E-value=98 Score=23.41 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhhccChhhH----HHHHHHHHHhccCcchhHHHHHHHHHhhcc
Q 044412 25 IRIHIIANQLKKCSSIKEL----ECVYATIVKTNANLDCFLAKQFISFCTSRF 73 (311)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~----~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 73 (311)
.+...|..++.+-++...+ ..++..|.+.+.++++.-|..+|+++ .+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~-l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA-LRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcC
Confidence 3456777777777766664 68999999989999999999999998 543
No 359
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=34.82 E-value=2.2e+02 Score=22.16 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=8.7
Q ss_pred chhHHHHHHHHHHhCCCC
Q 044412 135 PVFVQTAMVDNYSYSNKF 152 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~ 152 (311)
++..++.+.+-|+..|..
T Consensus 115 ~~gl~~Vl~qrY~~RgkS 132 (176)
T PF06576_consen 115 HPGLINVLRQRYCGRGKS 132 (176)
T ss_pred CcchHHHHHHHHHccccc
Confidence 334455555555555443
No 360
>COG0819 TenA Putative transcription activator [Transcription]
Probab=34.62 E-value=2.5e+02 Score=22.87 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHH
Q 044412 126 QVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMIT 205 (311)
Q Consensus 126 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~ 205 (311)
.+.+....|....|+..|...+..|++.+ .. ..+....-+|...+.++-+..+.+....|...|+
T Consensus 99 ~~~~~~~~~~~~aYt~ym~~~~~~g~~~~----~~-----------aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~ 163 (218)
T COG0819 99 ELLKTEPSPANKAYTRYLLDTAYSGSFAE----LL-----------AALLPCLWGYAEIGKRLKAKPRASPNPPYQEWID 163 (218)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhcCCHHH----HH-----------HHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHH
Confidence 33444567788899999999999998776 21 1233344444444666666665556677888899
Q ss_pred HHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhcc
Q 044412 206 SYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~a~~~~ 245 (311)
.|+.. ++.++.+.+.+... .+-.-+..-+..|...+...
T Consensus 164 ~Y~s~-ef~~~v~~~~~~ld~~~~~~~~~~~~~l~~iF~~s 203 (218)
T COG0819 164 TYASE-EFQEAVEELEALLDSLAENSSEEELEKLKQIFLTA 203 (218)
T ss_pred HcCCH-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 88764 34444433333332 22223333344444444443
No 361
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=34.35 E-value=2.8e+02 Score=23.35 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=59.9
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc------hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP------VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+.|+.+.|..++....... . ...|+ ...||.-.+.+.+..+++. |...+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~-----------~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~----a~~wL~~------- 61 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLL-----------N-SLDPDMAEELARVCYNIGKSLLSKKDKYEE----AVKWLQR------- 61 (278)
T ss_pred hhCCHHHHHHHHHHhhhHH-----------h-cCCcHHHHHHHHHHHHHHHHHHHcCCChHH----HHHHHHH-------
Confidence 5678888888887765421 0 12333 2456666666666657777 4444443
Q ss_pred HHHHHHHHHHHHHHHHHhh---CC--CCc-----HhHHHHHHHHHHhCCCh---hHHHHHHHHHHhcCCCCC-HHHHHHH
Q 044412 173 TWNTMIDAYARLAELLFNK---MP--AWD-----IRSWTTMITSYSQNKQF---REALDAFNKTKKSGTGSD-QVTMATV 238 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~---m~--~~~-----~~~y~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~-~~t~~~l 238 (311)
|.++++. +. .|+ ..+...++.+|-..+.. ++|.++++.+.... |+ +..|-.-
T Consensus 62 ------------a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~ 127 (278)
T PF08631_consen 62 ------------AYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLK 127 (278)
T ss_pred ------------HHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHH
Confidence 3333322 11 222 23566666666666554 34555666664431 22 2333344
Q ss_pred HHHHhccCChhhHH
Q 044412 239 LSACAHLGALDLGR 252 (311)
Q Consensus 239 i~a~~~~~~~~~a~ 252 (311)
+..+.+.++.+.+.
T Consensus 128 l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 128 LEILLKSFDEEEYE 141 (278)
T ss_pred HHHHhccCChhHHH
Confidence 45555555555333
No 362
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.94 E-value=1.7e+02 Score=20.53 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 044412 201 TTMITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~ 224 (311)
..+|..|...|+.++|..-+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456667777899999999888874
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.73 E-value=2.7e+02 Score=22.82 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=21.0
Q ss_pred ccCChhHHHHhcccCCCCCeeeeec---cccCCChhHHHHHHHHH
Q 044412 72 RFHFIDYTILVFPQMQEPNVFVYHA---FSSLRHPLQAIAFYLYM 113 (311)
Q Consensus 72 ~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~~~~a~~~~~~m 113 (311)
..++++.|.+.+-+-.-+......+ +...|+.+.|+.+++..
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc
Confidence 3456666666653332111111111 55567777777776654
No 364
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=33.58 E-value=3.7e+02 Score=24.37 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=63.6
Q ss_pred CCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCC-----CCCHh--HHHHHHHHHHHH--------HHHHHhhC--C
Q 044412 132 FSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP-----ERKFA--TWNTMIDAYARL--------AELLFNKM--P 193 (311)
Q Consensus 132 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~-----~~~~~--~~~~li~~~~~~--------a~~~~~~m--~ 193 (311)
.-|. ...+.+.+...|..|++|. |.++.+.-. ++++. .=..|+.+-+.. |...-.+- .
T Consensus 183 ~Ap~l~WA~~AtLe~r~~~gdWd~----AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL 258 (531)
T COG3898 183 KAPQLPWAARATLEARCAAGDWDG----ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL 258 (531)
T ss_pred hccCCchHHHHHHHHHHhcCChHH----HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 3444 5678899999999999999 666665433 23332 222233322221 22211111 1
Q ss_pred CCcHhHH-HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 194 AWDIRSW-TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 194 ~~~~~~y-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.||...- -.--.++.+.|++.++-.+++.+=+.--+|+.. ++..+.+.|+.-
T Consensus 259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta 311 (531)
T COG3898 259 APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA 311 (531)
T ss_pred CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH
Confidence 3554332 222467888899999999999988765555543 234466777654
No 365
>PHA02940 hypothetical protein; Provisional
Probab=32.58 E-value=1.8e+02 Score=24.14 Aligned_cols=101 Identities=5% Similarity=-0.069 Sum_probs=57.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHH---------------HHHHHhhccCChhHHHHhcccCCCCCee
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQ---------------FISFCTSRFHFIDYTILVFPQMQEPNVF 92 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~---------------ll~~~~~~~g~~~~a~~~~~~m~~~~~~ 92 (311)
..|..++.-..++.....+++.+.+. ++|++..-+. +..-| .+.++.++-..+-+++.+ -.
T Consensus 97 smF~nai~lYAnL~ainal~~~i~~~-ik~~~~~t~~~~i~FtqkA~dtv~~la~~y-vq~vk~d~r~~~a~~l~k--eL 172 (315)
T PHA02940 97 SMFDNAIELYANLAAINALLRLIRSF-IKPEPTLTTPLFIDFTQKAKDTVILLAGRY-VQDVKKDDRRTIANKLSK--EL 172 (315)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh-CCCCCCcCchHHHHHHHHhhhHHHHHHHHH-HHHccccHHHHHHHHHHh--hh
Confidence 36788888888888888888877766 7765433333 33333 444444433322222211 11
Q ss_pred eeec--cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHH
Q 044412 93 VYHA--FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146 (311)
Q Consensus 93 ~~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~ 146 (311)
+|.. --+..+++.+++-+++|.+.. -.....+|+.|..++
T Consensus 173 s~~~d~~enepdle~d~keie~~lE~~--------------~dl~rGtY~vL~~al 214 (315)
T PHA02940 173 SWTIDYQENEPDLESDFKEIEEELEEK--------------DDLSRGTYKVLKRAL 214 (315)
T ss_pred hHHHHHHhcCcchhhhHHHHHHHHhcc--------------chhhhhHHHHHHHHH
Confidence 2222 233345677777777776543 345567888887765
No 366
>PLN03025 replication factor C subunit; Provisional
Probab=31.33 E-value=3.4e+02 Score=23.38 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH
Q 044412 194 AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT 234 (311)
Q Consensus 194 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 234 (311)
.+....-..+++... .+++++|+..+.+|...|..|....
T Consensus 222 ~~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 222 QPHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 444445556666654 4899999999999999999887544
No 367
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.24 E-value=94 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=25.7
Q ss_pred CCCchhHH-HHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 273 EKNLLCWN-SITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 273 ~p~~~~~~-~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
+-+..-|| ++++-+.++.-.++|+++++.|.+.|
T Consensus 27 ~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 27 KIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred cCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34555554 56777778888899999999998876
No 368
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.03 E-value=3.6e+02 Score=23.49 Aligned_cols=16 Identities=0% Similarity=-0.286 Sum_probs=9.8
Q ss_pred ccCcchhHHHHHHHHH
Q 044412 54 NANLDCFLAKQFISFC 69 (311)
Q Consensus 54 g~~p~~~~~~~ll~~~ 69 (311)
|+.++...--+++.+.
T Consensus 141 ~F~e~Er~KLA~~Tal 156 (412)
T KOG2297|consen 141 LFEENERKKLAMLTAL 156 (412)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5666666666666555
No 369
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.78 E-value=1.4e+02 Score=27.92 Aligned_cols=73 Identities=4% Similarity=-0.099 Sum_probs=50.5
Q ss_pred HHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCC-Ceeee----------------ec--cccCCChhHHHH
Q 044412 48 ATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEP-NVFVY----------------HA--FSSLRHPLQAIA 108 (311)
Q Consensus 48 ~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~-~~~~~----------------~~--~~~~~~~~~a~~ 108 (311)
..+.+.|+..+......++... .|+...+...++.+... +..+. .. ....++..+|+.
T Consensus 186 ~i~~~egi~i~~~Al~~ia~~s---~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~~~d~~~Al~ 262 (504)
T PRK14963 186 RLLEAEGREAEPEALQLVARLA---DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALAQGDAAEALS 262 (504)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 3344679988888888888766 58888888777664311 11111 11 566789999999
Q ss_pred HHHHHHHCCCCchHH
Q 044412 109 FYLYMLRAEVLLTTV 123 (311)
Q Consensus 109 ~~~~m~~~~~~p~~~ 123 (311)
+++++...|..|..+
T Consensus 263 ~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 263 GAAQLYRDGFAARTL 277 (504)
T ss_pred HHHHHHHcCCCHHHH
Confidence 999999888777633
No 370
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.62 E-value=3.9e+02 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044412 279 WNSITEALAIHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P 309 (311)
.-.|+++. ..|+.+.|..+++++...|..|
T Consensus 249 vf~Li~ai-~~~d~~~al~~l~~L~~~g~~~ 278 (486)
T PRK14953 249 VRKFLNLL-LESDVDEAIKFLRTLEEKGYNL 278 (486)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHcCCCH
Confidence 33445544 4477888888888888777654
No 371
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.33 E-value=3.5e+02 Score=23.10 Aligned_cols=79 Identities=13% Similarity=-0.058 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHhcCC----CCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC-CCCchhHHHHHHHHH
Q 044412 213 FREALDAFNKTKKSGT----GSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR-EKNLLCWNSITEALA 287 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~----~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~-~p~~~~~~~li~~~~ 287 (311)
.++|.+.|.+....+. ..++..-..++....+.|+.+.-..+++. .. .++...-+.++.+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~-------------~~~~~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWEL-------------YKNSTSPEEKRRLLSALA 212 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHH-------------HHTTSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHH-------------HhccCCHHHHHHHHHhhh
Confidence 4667777777766322 34555666666667776665533333322 11 123334455555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 044412 288 IHGFAHEALGMFDRMTY 304 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~ 304 (311)
...+.+...++++....
T Consensus 213 ~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLS 229 (324)
T ss_dssp T-S-HHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHcC
Confidence 55555555555555444
No 372
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.17 E-value=2.2e+02 Score=22.07 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhH
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a 251 (311)
-.++..+....+.-.|.++++.+.+.|..++..|..--|..+...|-+...
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 355666666677789999999999999888888877778888888877643
No 373
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=29.80 E-value=1.8e+02 Score=19.72 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=39.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 85 (311)
...+..++...-..+-+..+...+...-.+-+....-.++..+ ++.++++.+..++..
T Consensus 33 p~~l~~if~~~l~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L-~~~~RF~l~~~fl~~ 90 (94)
T PF13877_consen 33 PDSLPKIFKNSLEPEFLSEILEALNEHFIPEDPEFIFEILEAL-SKVKRFDLAVMFLSS 90 (94)
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHh-cCCCCHHHHHHhcCH
Confidence 4466666766555555566666666665555666777777888 888888888877654
No 374
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.53 E-value=3.4e+02 Score=22.79 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=41.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcC-CCC-----CHHHHHHHHHHHhccCChhhHHHHHHhh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSG-TGS-----DQVTMATVLSACAHLGALDLGRGIQIYC 258 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~t~~~li~a~~~~~~~~~a~~~~~~~ 258 (311)
.++.-|.+.|+++.|-.++--+...+ ... +...-.-|+......++++.+.++.+..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL 246 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFL 246 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 56777888899998888887776533 333 4455667888888899999888776553
No 375
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.32 E-value=1.3e+02 Score=19.68 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~ 286 (311)
.++.|+++-...+++ .|..++. -+..+...+..|+.+-+..+++.-.++.. .|..-++.|..+
T Consensus 4 A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A- 66 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNLEIVKLLLENGADINS----------QDKNGNTALHYA- 66 (89)
T ss_dssp HHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-----------BSTTSSBHHHHH-
T ss_pred HHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccc----------cCCCCCCHHHHH-
Confidence 355566555544444 4444443 11133344455666644444432111111 222344455544
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 044412 287 AIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
+..|+. ++++.+.+.|..||
T Consensus 67 ~~~~~~----~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 67 AENGNL----EIVKLLLEHGADVN 86 (89)
T ss_dssp HHTTHH----HHHHHHHHTTT-TT
T ss_pred HHcCCH----HHHHHHHHcCCCCC
Confidence 445554 45666667787776
No 376
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=28.78 E-value=1.1e+02 Score=27.77 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=40.2
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 206 SYSQNKQFREALDAFNKTKKSGTG---SDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~g~~---p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
-+|+.|+.+....+|+.-.+.|.+ -=..+|.-|=.||.-.+++++|.+.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 478999999999999999988743 2234566666777778899999888766
No 377
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.76 E-value=2.7e+02 Score=21.29 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCch---hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC-HhHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV---FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK-FATWN 175 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~-~~~~~ 175 (311)
..+.+++..++..|+- +.|+. .++... -+...|++++ |..+|++..+.. ...|.
T Consensus 23 ~~d~~D~e~lLdALrv----------------LrP~~~e~d~~dg~--l~i~rg~w~e----A~rvlr~l~~~~~~~p~~ 80 (153)
T TIGR02561 23 SADPYDAQAMLDALRV----------------LRPNLKELDMFDGW--LLIARGNYDE----AARILRELLSSAGAPPYG 80 (153)
T ss_pred cCCHHHHHHHHHHHHH----------------hCCCccccchhHHH--HHHHcCCHHH----HHHHHHhhhccCCCchHH
Confidence 5567788888877754 45553 344433 3678899999 777777766644 33555
Q ss_pred HHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044412 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 224 (311)
.-+.++|-. -+ .-..|...-......|...++..+.+.+.
T Consensus 81 kAL~A~CL~------al---~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 81 KALLALCLN------AK---GDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHH------hc---CChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 555555532 11 12233333444445556666666666655
No 378
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.27 E-value=5.1e+02 Score=24.35 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=44.9
Q ss_pred hcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCCh------HHHHHHHhhc-CCCCchhHHHHHHHHHhcCChHHHHH
Q 044412 225 KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSL------GRSLLVFFKL-REKNLLCWNSITEALAIHGFAHEALG 297 (311)
Q Consensus 225 ~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~------~~a~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~ 297 (311)
+.|+..+......++.. ..|++..|...++..-.. ....+..+++ ...+....-.|+++..+ |+..+|+.
T Consensus 202 ~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~-~d~~~Al~ 278 (507)
T PRK06645 202 QENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIH-RETEKAIN 278 (507)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 35666666555555543 346666666555442100 0111111222 23444444555665555 88888999
Q ss_pred HHHHHHHcCCCC
Q 044412 298 MFDRMTYENVRP 309 (311)
Q Consensus 298 ~~~~M~~~g~~P 309 (311)
+++++...|..|
T Consensus 279 ~l~~L~~~g~~~ 290 (507)
T PRK06645 279 LINKLYGSSVNL 290 (507)
T ss_pred HHHHHHHcCCCH
Confidence 999988888766
No 379
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.14 E-value=93 Score=16.70 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHH
Q 044412 212 QFREALDAFNKTKKSGTGSDQVTMAT 237 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (311)
.++.|..+|++... +.|+..+|..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 57889999999987 4688887754
No 380
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=27.70 E-value=2.5e+02 Score=20.67 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF 171 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~ 171 (311)
.|..++-.+...|-+=- -+.+++.+++.|.
T Consensus 12 ~W~~vli~l~~IGGfFM----FRKFLK~lPKeDG 41 (141)
T PF11084_consen 12 FWVVVLIGLMAIGGFFM----FRKFLKRLPKEDG 41 (141)
T ss_pred HHHHHHHHHHHHhHHHH----HHHHHHhCCcccC
Confidence 45555556556665666 7888888887654
No 381
>COG5210 GTPase-activating protein [General function prediction only]
Probab=27.67 E-value=4.2e+02 Score=24.68 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+++..|...|+.+...++..++..+.+.-.++.+.++++.
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~ 402 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDC 402 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566666666666666666666666666666666666655
No 382
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.66 E-value=2e+02 Score=19.39 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=37.9
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhH
Q 044412 187 LLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLG 251 (311)
Q Consensus 187 ~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a 251 (311)
.+++.+.+.++.|-.-.-.--+...+.+.|..+++.+...| ...|..+.+|+-..|....|
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 34444444455554433344445567888888888888765 45677777777777765544
No 383
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=27.66 E-value=4.2e+02 Score=23.25 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCC-CCHhHHHHHHHHHHHHHHHHHhhCCCCc---HhHHHHHHHHHHhCCC
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAYARLAELLFNKMPAWD---IRSWTTMITSYSQNKQ 212 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~li~~~~~~a~~~~~~m~~~~---~~~y~~li~~~~~~g~ 212 (311)
.++|++++.-.... +|+.+++...+.+.+.+ |+-.+-...+. .-..+|+.+..|. ...|..+++..++.+-
T Consensus 65 ~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l~L~----vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~ 139 (378)
T KOG2753|consen 65 CVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPNDKTASLRLQ----VLSNLFNGVDKPTPARYQVYMSLVTLAASCKL 139 (378)
T ss_pred HHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccCCCcccHHH----HHHHHHhccCCCchHHHHHHHHHHHHHhhcce
Confidence 45666665555554 77744444444444322 32222111111 1345666666655 2357777777766654
Q ss_pred hh
Q 044412 213 FR 214 (311)
Q Consensus 213 ~~ 214 (311)
++
T Consensus 140 ~~ 141 (378)
T KOG2753|consen 140 IE 141 (378)
T ss_pred ee
Confidence 43
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.49 E-value=3.2e+02 Score=21.72 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=60.5
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccCChhhHHHHHHhhC-------------Ch
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT-MATVLSACAHLGALDLGRGIQIYCR-------------SL 261 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~a~~~~~~~~~a~~~~~~~~-------------~~ 261 (311)
....|..-+. +++.+..++|+.-|.++.+.|..--+.. -.-.-......|+...|...|++.+ ++
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555444 3566777888888888777664432221 1111223456677777777777711 11
Q ss_pred HHHHHHH------------hhcC--CCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 262 GRSLLVF------------FKLR--EKNL--LCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 262 ~~a~~~~------------~~~~--~p~~--~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
..|..+. +.+. .... ..=..|--+-.+.|++..|..+|..+...-
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1122211 1111 0111 223556667778999999999999887543
No 385
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.65 E-value=2.7e+02 Score=20.67 Aligned_cols=47 Identities=9% Similarity=-0.089 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 122 TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
...+..+..|-.-.-.++..++--+..+|+++.|.++|.-..+....
T Consensus 34 p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 34 PWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 33444445443222235556666788999999999999888887654
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=26.54 E-value=3.1e+02 Score=23.69 Aligned_cols=42 Identities=7% Similarity=-0.078 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhccc
Q 044412 41 KELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85 (311)
Q Consensus 41 ~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 85 (311)
..++++|..++.+.-+ +.+-+.++.++ -...+..+|...|..
T Consensus 150 ~KA~ELFayLv~hkgk--~v~~~~~ie~l-wpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGK--EVTSWEAIEAL-WPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCC--cccHhHHHHHH-ccccchhhHHHHHHH
Confidence 3347788888776422 34455666777 777777777666543
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.24 E-value=3.3e+02 Score=26.54 Aligned_cols=24 Identities=17% Similarity=0.559 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCccchHHHHHHhc
Q 044412 141 AMVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 141 ~ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
+|+.+|...|++-.+.++.++++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 899999999999995555555444
No 388
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.17 E-value=4.6e+02 Score=23.18 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=41.7
Q ss_pred cCCCCCHHHHHHHHHHHhccCChhhHHHHHHhh-----CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044412 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIYC-----RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFD 300 (311)
Q Consensus 226 ~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~-----~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 300 (311)
.|+..+......++.. ..|++..|...++.. +.+.. ..+.+-+..++......++++... ++...+..+++
T Consensus 194 ~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~~~~~~It~-~~v~~~l~~~~~~~i~~l~~ai~~-~~~~~~~~~~~ 269 (363)
T PRK14961 194 ESIDTDEYALKLIAYH--AHGSMRDALNLLEHAINLGKGNINI-KNVTDMLGLLNEKQSFLLTDALLK-KDSKKTMLLLN 269 (363)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4555555544444432 235566555554432 11111 111122223444555556666544 78888888888
Q ss_pred HHHHcCCCC
Q 044412 301 RMTYENVRP 309 (311)
Q Consensus 301 ~M~~~g~~P 309 (311)
++.+.|..|
T Consensus 270 ~l~~~g~~~ 278 (363)
T PRK14961 270 KISSIGIEW 278 (363)
T ss_pred HHHHcCCCH
Confidence 888877665
No 389
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=26.03 E-value=1.9e+02 Score=19.64 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=35.2
Q ss_pred HhccCChhhHHHHHHhhCChHHHHHHHhhcCC-CCchhHHHHHHHHHhcCChHHHH
Q 044412 242 CAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-KNLLCWNSITEALAIHGFAHEAL 296 (311)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~ 296 (311)
|....+.+....-.+..|....|..+++.+.+ ....-|..+++|+-..|...-|.
T Consensus 31 ~L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 31 CLTDEDKEQILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred HcCHHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHHH
Confidence 33333444443333333666677777777775 56677899999999998765553
No 390
>PF14162 YozD: YozD-like protein
Probab=25.91 E-value=68 Score=19.20 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCCCC
Q 044412 295 ALGMFDRMTYENVRPNG 311 (311)
Q Consensus 295 a~~~~~~M~~~g~~P~~ 311 (311)
|...|.++.++|+.|++
T Consensus 14 AefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 14 AEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHccCCCcH
Confidence 66678899999999874
No 391
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.70 E-value=6.7e+02 Score=25.30 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=8.7
Q ss_pred CChHHHHHHHHHHHHcCC
Q 044412 290 GFAHEALGMFDRMTYENV 307 (311)
Q Consensus 290 g~~~~a~~~~~~M~~~g~ 307 (311)
|+...++.+++++.+.|.
T Consensus 261 ~D~a~al~~l~~Li~~G~ 278 (824)
T PRK07764 261 GDGAALFGTVDRVIEAGH 278 (824)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 444445555555544443
No 392
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.37 E-value=4.4e+02 Score=22.71 Aligned_cols=150 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc
Q 044412 117 EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD 196 (311)
Q Consensus 117 ~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~ 196 (311)
|..|..-..+.+..-..+....--.-.......|++.+|..+....+..-++ +
T Consensus 115 G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---------------------------~ 167 (304)
T COG3118 115 GAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE---------------------------N 167 (304)
T ss_pred CCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc---------------------------c
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC-CC-
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR-EK- 274 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~-~p- 274 (311)
...--.+.++|...|+.+.|..++..+...--.........=|..+.+..... +...+-.+.. .|
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~-------------~~~~l~~~~aadPd 234 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP-------------EIQDLQRRLAADPD 234 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC-------------CHHHHHHHHHhCCC
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
|+..=-.+-..+...|+.++|.+.+=.+.++.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.15 E-value=5.9e+02 Score=24.07 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc------hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP------VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
|.+.+++++|..++..| ..| -...+.+.+.+.+..--++.+...+..+...-.|.
T Consensus 418 yl~~~qi~eAi~lL~sm-------------------nW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 418 YLRCDQIEEAINLLLSM-------------------NWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred HHhcCCHHHHHHHHHhC-------------------CccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Q ss_pred HhHHHHHHHHHHHH----HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 044412 171 FATWNTMIDAYARL----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 171 ~~~~~~li~~~~~~----a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~ 246 (311)
...-......|... |+++|..+. +.+++++|+.+--++. +..-|.-+-..-...|
T Consensus 479 rpl~~~~~~ey~d~V~~~aRRfFhhLL---------------R~~rfekAFlLAvdi~------~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 479 RPLSDATVLEYRDPVSDLARRFFHHLL---------------RYQRFEKAFLLAVDIG------DRDLFMDLHYLAKDKG 537 (545)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHhcc------chHHHHHHHHHHHhcc
Q ss_pred ChhhHH
Q 044412 247 ALDLGR 252 (311)
Q Consensus 247 ~~~~a~ 252 (311)
+.+.|.
T Consensus 538 e~~La~ 543 (545)
T PF11768_consen 538 ELALAE 543 (545)
T ss_pred chhhhh
No 394
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.00 E-value=5.3e+02 Score=23.50 Aligned_cols=42 Identities=7% Similarity=0.058 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCcchhHH--HHHHHH-----HhhccCChhHHHHhcccC
Q 044412 44 ECVYATIVKTNANLDCFLA--KQFISF-----CTSRFHFIDYTILVFPQM 86 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~--~~ll~~-----~~~~~g~~~~a~~~~~~m 86 (311)
.++.+.+.+.|..|+.... ...+.. . ...|+.+-+.-+++.=
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a-~~~~~~~iv~~Ll~~g 96 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKY-NLTDVKEIVKLLLEYG 96 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH-HhhchHHHHHHHHHCC
Confidence 3456666778877765322 233444 5 6777777777776653
No 395
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=24.98 E-value=53 Score=23.48 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCCCC
Q 044412 296 LGMFDRMTYENVRPNG 311 (311)
Q Consensus 296 ~~~~~~M~~~g~~P~~ 311 (311)
.-+.++|..+|++||+
T Consensus 55 ~lv~~EM~~RGY~~~~ 70 (120)
T TIGR02328 55 LLVMEEMATRGYHVSK 70 (120)
T ss_pred HHHHHHHHHcCCCCCh
Confidence 4568899999999984
No 396
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=24.96 E-value=1.6e+02 Score=25.73 Aligned_cols=81 Identities=7% Similarity=0.006 Sum_probs=0.0
Q ss_pred ccChhhH---HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC----------------CCCeeeeec-
Q 044412 37 CSSIKEL---ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ----------------EPNVFVYHA- 96 (311)
Q Consensus 37 ~~~~~~~---~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~----------------~~~~~~~~~- 96 (311)
|...+.. ..+-....+.|++.+....+.++..+ . |+...+..-++.+. -.+..+++.
T Consensus 137 ~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~-~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f 213 (334)
T COG1466 137 CKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEAL-G--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIF 213 (334)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-C--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHH
Q ss_pred ----cccCCChhHHHHHHHHHHHCCCCc
Q 044412 97 ----FSSLRHPLQAIAFYLYMLRAEVLL 120 (311)
Q Consensus 97 ----~~~~~~~~~a~~~~~~m~~~~~~p 120 (311)
....|+..+|+++++++...|..|
T Consensus 214 ~l~dail~g~~~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 214 DLADALLKGDVKKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCcH
No 397
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=24.86 E-value=3.5e+02 Score=21.42 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
.-.+..++-+.|++++|...++++.+
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666667777777777777655
No 398
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.71 E-value=4.8e+02 Score=22.94 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec---------cc
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA---------FS 98 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~ 98 (311)
..+...+......+--+-+.+ +..++.|...++.+.. .+...+++-.+..+...+..-.+.-. |+
T Consensus 42 e~l~~~Ird~~Map~Ye~lce---~~~i~~D~~~l~~m~~---~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc 115 (393)
T KOG0687|consen 42 EKLLAAIRDEDMAPLYEYLCE---SLVIKLDQDLLNSMKK---ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC 115 (393)
T ss_pred HHHHHHHHhcccchHHHHHHh---hcceeccHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-CccchHHHHHHhccCCCCCHh----H
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNK-FFESRRVSRRLFDEMPERKFA----T 173 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~a~~~~~~~~~~~~~----~ 173 (311)
+-|+.+.|++.++.-.+.. ...|.+.|+..+..-+..+.-..+ +.+-.+.|..+++++...+.- +
T Consensus 116 qigDkena~~~~~~t~~kt----------vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 116 QIGDKENALEALRKTYEKT----------VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HhccHHHHHHHHHHHHHHH----------hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Q ss_pred HHHHHHHHHHH----HHHHHhhCCC---------CcHhHHHHHHHHHH
Q 044412 174 WNTMIDAYARL----AELLFNKMPA---------WDIRSWTTMITSYS 208 (311)
Q Consensus 174 ~~~li~~~~~~----a~~~~~~m~~---------~~~~~y~~li~~~~ 208 (311)
|-.+-..-.+. |.-+++.++. ++.++|+.+-..++
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~ 233 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIA 233 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhhe
No 399
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=24.57 E-value=4.2e+02 Score=22.21 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=17.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 044412 283 TEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 283 i~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
-+-|.+.|.+..|..-+++|++.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 34567788888888888888765
No 400
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.56 E-value=2e+02 Score=27.67 Aligned_cols=95 Identities=5% Similarity=-0.020 Sum_probs=61.0
Q ss_pred HHHHHhhccChhh--H--H----HHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeee------
Q 044412 30 IANQLKKCSSIKE--L--E----CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFV------ 93 (311)
Q Consensus 30 ~~~~l~~~~~~~~--~--~----~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~------ 93 (311)
...++..|-.+.- . . .+-..+.+.|+..+......++... .|+...+..++++... ....+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s---~GslR~al~lLdq~ia~~~~~It~~~V~~ 244 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA---RGSMRDALSLTDQAIAFGSGQLQEAAVRQ 244 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 4456666653322 1 2 3333445679998888888888765 5889888888765321 11111
Q ss_pred ----------eec--cccCCChhHHHHHHHHHHHCCCCchHHHHHH
Q 044412 94 ----------YHA--FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 94 ----------~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
+.. ....++...+++++++|...|..|..+++.+
T Consensus 245 ~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l 290 (618)
T PRK14951 245 MLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEM 290 (618)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 5667899999999999999998887444444
No 401
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=5.1e+02 Score=23.00 Aligned_cols=91 Identities=11% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh-------------------------hCChHHH
Q 044412 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------------------------CRSLGRS 264 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~-------------------------~~~~~~a 264 (311)
.|+..+|...++++.+. .+-|...++..=.+|.-.|+.+.-...++. +|-.++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Q ss_pred HHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 265 LLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 265 ~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
++.-++-. +-|...-.++-..+--.|+.+++.+...+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
No 402
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.86 E-value=1.5e+02 Score=17.68 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=20.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 283 TEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 283 i~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
|+-+...|--.+++.+.-++.+.|+.|.
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 4455666777778888888888888774
No 403
>PRK05907 hypothetical protein; Provisional
Probab=23.81 E-value=2.8e+02 Score=24.00 Aligned_cols=76 Identities=9% Similarity=-0.053 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC----C-------------CCeeeeec-----cccCC
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ----E-------------PNVFVYHA-----FSSLR 101 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~----~-------------~~~~~~~~-----~~~~~ 101 (311)
..+-+.+.+.|.+.+......++..+ .. +++..+..=++.+. + ++...+|+ ..-.|
T Consensus 141 ~Wi~~~~~~~g~~i~~~a~~~L~~~~-~~-~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~ 218 (311)
T PRK05907 141 QLLIQRAKELGISCSLGLASLFVSKF-PQ-TGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRR 218 (311)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHc-cC-CCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHcc
Confidence 56777788899999999888888654 21 45555544444431 1 33333444 67889
Q ss_pred ChhHHHHHHHHHHHC-CCCch
Q 044412 102 HPLQAIAFYLYMLRA-EVLLT 121 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~-~~~p~ 121 (311)
+..+|+++++++... |..|-
T Consensus 219 ~~~~Al~il~~Ll~~~ge~p~ 239 (311)
T PRK05907 219 DRVEGHSLLRSLLSDMGEDPL 239 (311)
T ss_pred CHHHHHHHHHHHHHhcCCChH
Confidence 999999999999888 75444
No 404
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.79 E-value=4.1e+02 Score=23.95 Aligned_cols=79 Identities=11% Similarity=-0.006 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh-------hCChHHHHHHHhhcCCCCchhHHHHHHHH
Q 044412 214 REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY-------CRSLGRSLLVFFKLREKNLLCWNSITEAL 286 (311)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~-------~~~~~~a~~~~~~~~~p~~~~~~~li~~~ 286 (311)
+.-...+....+.|.-.|...+...+..+...-.+++|-+--.. ..+....-++++-+-.||+..|.++.-++
T Consensus 168 ~~~~~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~ 247 (391)
T cd07229 168 GTLGRRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASN 247 (391)
T ss_pred chHHHHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHc
Confidence 33445555566677777777777777776655555544322111 11111222445555579999999999988
Q ss_pred HhcCCh
Q 044412 287 AIHGFA 292 (311)
Q Consensus 287 ~~~g~~ 292 (311)
+.-|-+
T Consensus 248 a~p~~~ 253 (391)
T cd07229 248 ASSAAL 253 (391)
T ss_pred CCcccc
Confidence 876544
No 405
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.71 E-value=2.1e+02 Score=21.39 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=38.5
Q ss_pred HHHHHHHhC-CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 202 TMITSYSQN-KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 202 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.++..+... +..-.|.++++.+.+.+...+..|..--|..+...|-+.
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 456666654 468899999999999998888888777788888888775
No 406
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.58 E-value=6.2e+02 Score=23.77 Aligned_cols=40 Identities=8% Similarity=0.048 Sum_probs=31.1
Q ss_pred CCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 044412 193 PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233 (311)
Q Consensus 193 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 233 (311)
...+......+++++.. |+.+.++.++++|...|..|...
T Consensus 242 g~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 242 GTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 34555566677777655 89999999999999999988643
No 407
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.52 E-value=2.2e+02 Score=18.44 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=24.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
..+.+++.++++.+.+.| ..+|..++.++...+...
T Consensus 40 ~~~~~k~~~Lld~l~~kg----~~af~~F~~~L~~~~~~~ 75 (80)
T cd01671 40 STRQDKARKLLDILPRKG----PKAFQSFLQALQETDQPH 75 (80)
T ss_pred CChHHHHHHHHHHHHhcC----hHHHHHHHHHHHhcCChh
Confidence 346778888888887665 556777777776655443
No 408
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.26 E-value=1.4e+02 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 281 SITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 281 ~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
++|+-+-++.-.++|+++++-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666667777777777777777665
No 409
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.24 E-value=3.1e+02 Score=20.13 Aligned_cols=42 Identities=5% Similarity=-0.002 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhccCcchh-HHHHHHHHHhhccCChhHHHHhcc
Q 044412 42 ELECVYATIVKTNANLDCF-LAKQFISFCTSRFHFIDYTILVFP 84 (311)
Q Consensus 42 ~~~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~a~~~~~ 84 (311)
+...+|..|.+.|+--... -|...-..+ -..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~l-E~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLL-EAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 3466777777777644443 334444444 66677777777764
No 410
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=3.6e+02 Score=22.72 Aligned_cols=163 Identities=11% Similarity=0.063 Sum_probs=89.9
Q ss_pred CCCc----hhHHHHHHHHHHhCCCCccchHHHHHHhccCC---CCCHhHHHHHHHHHHHH--HHHHHhhCCCCc--HhHH
Q 044412 132 FSSP----VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP---ERKFATWNTMIDAYARL--AELLFNKMPAWD--IRSW 200 (311)
Q Consensus 132 ~~~~----~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~---~~~~~~~~~li~~~~~~--a~~~~~~m~~~~--~~~y 200 (311)
+.|| ...|----.+|-...++++ +...+.... +.+.. +.++-..- |--+..++..-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feK----akdcLlkA~~~yEnnrs----lfhAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEK----AKDCLLKASKGYENNRS----LFHAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4565 3445555667888888888 444433221 11211 11111111 555556665543 3468
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh--cCCCCCH--HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHh-------
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKK--SGTGSDQ--VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF------- 269 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~--~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~------- 269 (311)
+--+..|...|.++.|-.-+++--+ .++.||- ..|.--+...-..++.+.|..++..++++-.-.+.|.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8889999999999988877777543 4678875 3566666666666777766666655433332222222
Q ss_pred hcCC--------CCc-hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 270 KLRE--------KNL-LCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 270 ~~~~--------p~~-~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
+... ++. ..|-..|--+.-..++..|...+++=
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 2220 111 12444444555556666666666544
No 411
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.16 E-value=9e+02 Score=25.51 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=49.5
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHh---------cCCCc-----hhHHHHHHHHHHhCCCCccchHHHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN---------GFSSP-----VFVQTAMVDNYSYSNKFFESRRVSRRL 162 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~---------g~~~~-----~~~~~~ll~~~~~~g~~~~a~~~a~~~ 162 (311)
|...|...+|++.|.+-...-.+-+.+++..... |-.|. .+=|-.++..+-+.+..|.+.++|-..
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7788899999999998866544555555555543 33332 233667777888888888888887777
Q ss_pred hccCCC
Q 044412 163 FDEMPE 168 (311)
Q Consensus 163 ~~~~~~ 168 (311)
.+..+.
T Consensus 1010 Ie~l~d 1015 (1480)
T KOG4521|consen 1010 IENLPD 1015 (1480)
T ss_pred HHhCCC
Confidence 776654
No 412
>PRK07914 hypothetical protein; Reviewed
Probab=23.05 E-value=2.7e+02 Score=24.05 Aligned_cols=74 Identities=5% Similarity=-0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC---------------CCeeeeec-----cccCCCh
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE---------------PNVFVYHA-----FSSLRHP 103 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~---------------~~~~~~~~-----~~~~~~~ 103 (311)
..+-+...+.|++.++...+.|+..+ + ++......-++++.- .+...++. ..-.|+.
T Consensus 135 ~wi~~~a~~~g~~i~~~A~~~L~~~~-g--~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~ 211 (320)
T PRK07914 135 DFVRKEFRSLRVKVDDDTVTALLDAV-G--SDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDV 211 (320)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH-C--ccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCH
Q ss_pred hHHHHHHHHHHHCCCCc
Q 044412 104 LQAIAFYLYMLRAEVLL 120 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p 120 (311)
.+|+++++++...|..|
T Consensus 212 ~~A~~~l~~L~~~ge~p 228 (320)
T PRK07914 212 AGAAEALRWAMMRGEPH 228 (320)
T ss_pred HHHHHHHHHHHHCCCch
No 413
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.79 E-value=1.4e+02 Score=16.12 Aligned_cols=33 Identities=0% Similarity=-0.127 Sum_probs=18.4
Q ss_pred HHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHh
Q 044412 45 CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILV 82 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~ 82 (311)
+....+...|++.+ ..-.+|. ...|+++.|..+
T Consensus 4 ~~v~~L~~mGf~~~-~~~~AL~----~~~~nve~A~~~ 36 (37)
T PF00627_consen 4 EKVQQLMEMGFSRE-QAREALR----ACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHTS-HH-HHHHHHH----HTTTSHHHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHH----HcCCCHHHHHHh
Confidence 44566777788666 3333332 234588887765
No 414
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.18 E-value=6.8e+02 Score=23.71 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=41.0
Q ss_pred ccCCCCCHhHHHHHHHHHHHH----HHHHHhhCCCCc-HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 044412 164 DEMPERKFATWNTMIDAYARL----AELLFNKMPAWD-IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS 230 (311)
Q Consensus 164 ~~~~~~~~~~~~~li~~~~~~----a~~~~~~m~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 230 (311)
+.+.++....++.++..+-.. -.++++++.. . ...+..++++....|-.....-+.+.+....+.+
T Consensus 303 ~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~ 373 (574)
T smart00638 303 SDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP 373 (574)
T ss_pred HHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH
Confidence 333444445666777666655 5555555544 3 6788889999999887666555555555544443
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=21.91 E-value=2.8e+02 Score=20.61 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
+-+.....-.+-|++.....-+.||.+.+|+..|..+|
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRil 107 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRIL 107 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHH
Confidence 33344444456677777777777777766666555554
No 416
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=21.84 E-value=1.2e+02 Score=20.25 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P 309 (311)
......+++.+.. ++++++...+.++...|+.|
T Consensus 5 ~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 5 PEVIEEILESCLN-GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH
Confidence 3344445555544 48888888888877777754
No 417
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=21.75 E-value=1.5e+02 Score=22.90 Aligned_cols=16 Identities=0% Similarity=0.102 Sum_probs=10.8
Q ss_pred cCChhHHHHhcccCCC
Q 044412 73 FHFIDYTILVFPQMQE 88 (311)
Q Consensus 73 ~g~~~~a~~~~~~m~~ 88 (311)
..+.+++.+++++..+
T Consensus 47 k~np~~~~~~l~~~~~ 62 (164)
T PF07840_consen 47 KNNPEKVLEILAELDK 62 (164)
T ss_dssp HH-HHHHHHHHHCCTT
T ss_pred HHCHHHHHHHHHHhhh
Confidence 4577778888887754
No 418
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=21.69 E-value=89 Score=22.88 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.2
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHH
Q 044412 209 QNKQFREALDAFNKTKKSGTGSDQVTMA 236 (311)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 236 (311)
-.|+.+.|.+++..++..|++|....|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 3599999999999999999999776543
No 419
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=21.60 E-value=4e+02 Score=24.98 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=50.9
Q ss_pred HHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC-----CCeeeeec------------------cccCC
Q 044412 45 CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE-----PNVFVYHA------------------FSSLR 101 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~------------------~~~~~ 101 (311)
.+-..+.+.|+..+......++... .|+...|...+++... .+..+... ....+
T Consensus 195 ~L~~i~~~egi~ie~eAL~~Ia~~s---~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~ 271 (507)
T PRK06645 195 LLEYITKQENLKTDIEALRIIAYKS---EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHR 271 (507)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC
Confidence 3334445668877877777777654 4788888777766521 11122111 56778
Q ss_pred ChhHHHHHHHHHHHCCCCchHHH
Q 044412 102 HPLQAIAFYLYMLRAEVLLTTVH 124 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~~~~ 124 (311)
+.++|+++++++...|..|..+.
T Consensus 272 d~~~Al~~l~~L~~~g~~~~~~l 294 (507)
T PRK06645 272 ETEKAINLINKLYGSSVNLEIFI 294 (507)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999998777443
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.54 E-value=1.2e+02 Score=14.89 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=11.9
Q ss_pred CChhHHHHHHHHHHHC
Q 044412 101 RHPLQAIAFYLYMLRA 116 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~ 116 (311)
|+.+.|..+|+.+...
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4577888888887654
No 421
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.35 E-value=2.4e+02 Score=24.31 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHHHHHHhC---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 202 TMITSYSQN---KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 202 ~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.+|+++.++ .+++-|+-.+.+|.+.|--|....=..++-|+-.-|..+
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAd 178 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNAD 178 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 457777775 789999999999999999998888888888887777554
No 422
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.24 E-value=5.7e+02 Score=24.31 Aligned_cols=70 Identities=13% Similarity=-0.009 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 185 a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
...++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-+ ...-|..-+..+.++|+.+....+-+
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 55556666655666667778888888888888888888765422 24467777788888888877666543
No 423
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=21.16 E-value=3.5e+02 Score=22.04 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHHhhccChhhH----HHHHHHHHHhccCcchhHHHHHHHHHhhccC
Q 044412 28 HIIANQLKKCSSIKEL----ECVYATIVKTNANLDCFLAKQFISFCTSRFH 74 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~----~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g 74 (311)
..|..++...-+-+.. .++...+...|+..++..++.+++-| .+.+
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky-d~~~ 173 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY-DRFG 173 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh-cccc
Confidence 3444444444333322 68888889999999999999999999 8664
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.12 E-value=2.4e+02 Score=27.68 Aligned_cols=79 Identities=6% Similarity=-0.105 Sum_probs=54.3
Q ss_pred HHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeee----------------ec--cccCCChhH
Q 044412 46 VYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVY----------------HA--FSSLRHPLQ 105 (311)
Q Consensus 46 l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~----------------~~--~~~~~~~~~ 105 (311)
+-..+.+.|+..+......++... .|+...+..++++... .+.++. .. ....++...
T Consensus 187 L~~Il~kEgi~id~eAL~~Ia~~A---~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~~d~~~ 263 (709)
T PRK08691 187 LAHVLDSEKIAYEPPALQLLGRAA---AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAA 263 (709)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHcCCHHH
Confidence 334445678888888888888765 5899999888876421 111111 11 566788999
Q ss_pred HHHHHHHHHHCCCCchHHHHHH
Q 044412 106 AIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 106 a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
++.++++|...|+.+..+..++
T Consensus 264 al~~l~~L~~~G~d~~~~l~~L 285 (709)
T PRK08691 264 LLAKAQEMAACAVGFDNALGEL 285 (709)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988777444444
No 425
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.03 E-value=6.9e+02 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.7
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 233 (311)
.+...+..++.+....+....|+.++.+|.+.|..|...
T Consensus 246 ~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 246 HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 456667777777766666679999999999999888654
No 426
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=1.4e+02 Score=21.29 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 044412 199 SWTTMITSY 207 (311)
Q Consensus 199 ~y~~li~~~ 207 (311)
+|+-+|+++
T Consensus 75 sYS~fi~gL 83 (118)
T COG0292 75 SYSRFINGL 83 (118)
T ss_pred cHHHHHHHH
Confidence 333444433
No 427
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=20.91 E-value=3.6e+02 Score=23.33 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 234 t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+++..-++|..+|.+.+|.++.+..-.++. -+...|-.|+..++..|+--.|.+-+++|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp----------L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP----------LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh----------hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344445667777777766655544333332 356678899999999999888877777774
No 428
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.66 E-value=1.3e+02 Score=27.33 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=44.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCch--------HHHHHHHHhcCCCchh----HHHHHHHHHHhCCC-Ccc
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLT--------TVHGQVWKNGFSSPVF----VQTAMVDNYSYSNK-FFE 154 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~-~~~ 154 (311)
....+++|+++-++-...|..-+ +++..+.++|+.||.. +..-.+++|+=.|- +++
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee 283 (561)
T COG2987 215 IAETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEE 283 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHH
Confidence 45689999999999888876555 9999999999999854 35557777887776 556
No 429
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.40 E-value=2.2e+02 Score=21.46 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACA 243 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 243 (311)
.+|..+...+....+.++.+.+.+.|+..+..|..-.|.-+.
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 456777788999999999999999999999999877776554
No 430
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.35 E-value=5.7e+02 Score=22.12 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=35.2
Q ss_pred ccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCcc
Q 044412 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFE 154 (311)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 154 (311)
.+.++.++|+..|.++...|++-++- ...-...+...+-..|.+.|+...
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek-------~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEK-------TLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhh-------hhhHHHHHHHHHHHHHHhcCCcch
Confidence 36789999999999998888643300 011223456667888999999888
No 431
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.23 E-value=5.9e+02 Score=22.25 Aligned_cols=70 Identities=4% Similarity=-0.106 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHh--------
Q 044412 217 LDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAI-------- 288 (311)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~-------- 288 (311)
.++|+.|.+.++.|.-..|..+.-.+...=.+....++|+. +- .|..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDs-------------l~-sD~~rfd~Ll~iCcsmlil~Re~ 328 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDS-------------LL-SDPQRFDFLLYICCSMLILVRER 328 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHH-------------Hh-cChhhhHHHHHHHHHHHHHHHHH
Confidence 46888999999999999988877777776666655555532 22 233336677776665
Q ss_pred --cCChHHHHHHHH
Q 044412 289 --HGFAHEALGMFD 300 (311)
Q Consensus 289 --~g~~~~a~~~~~ 300 (311)
.|++...+++++
T Consensus 329 il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 329 ILEGDFTVNMKLLQ 342 (370)
T ss_pred HHhcchHHHHHHHh
Confidence 466665555543
No 432
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=20.22 E-value=2.4e+02 Score=27.13 Aligned_cols=76 Identities=9% Similarity=-0.119 Sum_probs=49.3
Q ss_pred HHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC------------------CCeeeeec--cccCCChhHH
Q 044412 47 YATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE------------------PNVFVYHA--FSSLRHPLQA 106 (311)
Q Consensus 47 ~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~------------------~~~~~~~~--~~~~~~~~~a 106 (311)
-....+.|+..+......++... .|+...+...+++... .....+.. ....|+..+|
T Consensus 201 ~~i~~kegi~i~~eAl~lIa~~a---~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~A 277 (598)
T PRK09111 201 SRIAAKEGVEVEDEALALIARAA---EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAA 277 (598)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHH
Confidence 33444578888888888777765 5788888887766411 00111111 4566888889
Q ss_pred HHHHHHHHHCCCCchHHHH
Q 044412 107 IAFYLYMLRAEVLLTTVHG 125 (311)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~ 125 (311)
+++++++...|..|..+..
T Consensus 278 l~~l~~l~~~G~~p~~il~ 296 (598)
T PRK09111 278 LAEFRAQYDAGADPVVVLT 296 (598)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 9999888888876663333
No 433
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.16 E-value=2.8e+02 Score=27.62 Aligned_cols=89 Identities=8% Similarity=-0.028 Sum_probs=51.0
Q ss_pred HHHHHhhccChhhH----HHHH----HHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec---
Q 044412 30 IANQLKKCSSIKEL----ECVY----ATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA--- 96 (311)
Q Consensus 30 ~~~~l~~~~~~~~~----~~l~----~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~--- 96 (311)
...++..|..+..- .++. ....+.|+..+......+.+.+ .|+...|+.++++... .+.++...
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A---~GsmRdALsLLdQAia~~~~~It~~~V~~ 239 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA---QGSMRDALSLTDQAIAYSANEVTETAVSG 239 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 34556667533322 2332 2233468888888888777765 6889999988766321 11111111
Q ss_pred ---------------cccCCChhHHHHHHHHHHHCCCCch
Q 044412 97 ---------------FSSLRHPLQAIAFYLYMLRAEVLLT 121 (311)
Q Consensus 97 ---------------~~~~~~~~~a~~~~~~m~~~~~~p~ 121 (311)
....++..+++.+++++...|..+.
T Consensus 240 ~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 240 MLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 4455666777777777766654433
No 434
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.13 E-value=1.6e+02 Score=26.73 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccC
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQM 86 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m 86 (311)
-+++.++.+..++||.+.+.-+...| ++.--.+.|.++++-.
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftly-skslpldlacRIwDvy 500 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLY-SKSLPLDLACRIWDVY 500 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHH-hccCChHHhhhhhhee
Confidence 36788888999999999999999999 9999999998887654
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.00 E-value=2.9e+02 Score=21.97 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=31.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
.+-.|.+.|.+++|.+++++..+ .|+..+...-+....+.++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 35568889999999999999886 56666666666666665543
Done!