Query 044412
Match_columns 311
No_of_seqs 204 out of 2116
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.6E-31 1.2E-35 240.7 16.7 190 44-310 10-209 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.6E-31 1.6E-35 240.0 16.5 210 11-289 14-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1.1E-20 3.6E-25 175.6 23.0 276 28-310 121-513 (597)
4 2xpi_A Anaphase-promoting comp 99.8 4.1E-19 1.4E-23 164.9 20.3 245 27-305 308-579 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.8 8.9E-20 3E-24 172.1 7.8 136 133-309 124-264 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-19 8.4E-24 169.1 9.3 101 197-310 127-235 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.6 2E-14 6.9E-19 126.3 21.2 270 29-310 38-371 (388)
8 2y4t_A DNAJ homolog subfamily 99.6 1.2E-13 4.1E-18 123.5 20.3 262 27-310 29-361 (450)
9 1w3b_A UDP-N-acetylglucosamine 99.6 2.4E-13 8.2E-18 119.4 19.0 253 31-304 6-333 (388)
10 1b89_A Protein (clathrin heavy 99.5 5.9E-14 2E-18 123.3 10.2 219 28-303 7-234 (449)
11 2y4t_A DNAJ homolog subfamily 99.4 2.1E-12 7.4E-17 115.3 16.2 228 57-305 24-324 (450)
12 3mkr_A Coatomer subunit epsilo 99.3 5.8E-11 2E-15 100.4 16.1 211 61-304 36-263 (291)
13 3hym_B Cell division cycle pro 99.3 6.7E-11 2.3E-15 100.7 15.8 249 28-304 26-298 (330)
14 2gw1_A Mitochondrial precursor 99.3 2E-10 6.7E-15 104.1 19.4 58 27-86 42-99 (514)
15 4eqf_A PEX5-related protein; a 99.3 3.1E-10 1.1E-14 98.5 17.9 261 27-301 68-352 (365)
16 2gw1_A Mitochondrial precursor 99.2 3.3E-09 1.1E-13 96.0 24.8 81 31-114 13-100 (514)
17 3ieg_A DNAJ homolog subfamily 99.2 9.9E-10 3.4E-14 94.4 19.9 249 27-305 40-335 (359)
18 1b89_A Protein (clathrin heavy 99.2 1.3E-11 4.5E-16 108.5 7.0 178 71-298 14-199 (449)
19 3fp2_A TPR repeat-containing p 99.2 1.7E-09 5.6E-14 98.7 21.0 273 27-305 62-491 (537)
20 1fch_A Peroxisomal targeting s 99.2 4.1E-10 1.4E-14 97.6 15.8 251 27-301 67-355 (368)
21 3hym_B Cell division cycle pro 99.2 1.4E-09 4.9E-14 92.4 18.8 234 28-293 60-322 (330)
22 1fch_A Peroxisomal targeting s 99.1 7.9E-10 2.7E-14 95.8 14.3 218 59-304 64-313 (368)
23 3cv0_A Peroxisome targeting si 99.1 7.8E-10 2.7E-14 93.9 13.6 250 28-302 25-312 (327)
24 4eqf_A PEX5-related protein; a 99.1 2E-10 6.8E-15 99.7 10.1 218 58-304 64-309 (365)
25 3ieg_A DNAJ homolog subfamily 99.1 6.1E-09 2.1E-13 89.4 17.7 243 29-305 8-301 (359)
26 2ho1_A Type 4 fimbrial biogene 99.1 3.1E-09 1E-13 87.1 14.9 195 59-305 37-238 (252)
27 2pl2_A Hypothetical conserved 99.1 1E-09 3.4E-14 88.5 11.0 190 56-302 2-211 (217)
28 2q7f_A YRRB protein; TPR, prot 99.0 1.2E-09 4E-14 88.9 9.5 194 58-305 22-222 (243)
29 3fp2_A TPR repeat-containing p 99.0 1.2E-08 4E-13 93.0 16.8 273 28-304 29-406 (537)
30 2vq2_A PILW, putative fimbrial 99.0 1.3E-08 4.6E-13 81.3 14.8 195 59-305 8-211 (225)
31 3cv0_A Peroxisome targeting si 99.0 4.7E-09 1.6E-13 89.1 12.7 220 58-305 20-269 (327)
32 3mkr_A Coatomer subunit epsilo 99.0 1E-08 3.4E-13 86.6 14.3 191 29-250 39-252 (291)
33 3uq3_A Heat shock protein STI1 99.0 3.1E-09 1E-13 87.0 10.9 218 28-304 9-235 (258)
34 3u4t_A TPR repeat-containing p 98.9 1.9E-07 6.5E-12 77.1 19.9 225 29-305 8-250 (272)
35 3nf1_A KLC 1, kinesin light ch 98.9 3.8E-08 1.3E-12 82.8 15.1 232 15-304 17-306 (311)
36 1xnf_A Lipoprotein NLPI; TPR, 98.9 3.2E-08 1.1E-12 81.8 14.1 218 36-305 17-244 (275)
37 2ho1_A Type 4 fimbrial biogene 98.8 4.9E-08 1.7E-12 79.8 13.0 187 28-257 41-234 (252)
38 2vq2_A PILW, putative fimbrial 98.8 9.5E-08 3.3E-12 76.2 13.4 157 97-305 18-176 (225)
39 4a1s_A PINS, partner of inscut 98.7 8.1E-08 2.8E-12 84.4 10.6 258 29-304 53-371 (411)
40 2q7f_A YRRB protein; TPR, prot 98.7 6.7E-08 2.3E-12 78.3 9.2 184 29-257 28-218 (243)
41 1xnf_A Lipoprotein NLPI; TPR, 98.6 1.1E-07 3.8E-12 78.5 9.6 214 27-299 46-269 (275)
42 3as5_A MAMA; tetratricopeptide 98.6 1.9E-06 6.5E-11 66.2 16.1 154 136-304 8-172 (186)
43 3edt_B KLC 2, kinesin light ch 98.6 5.1E-07 1.8E-11 74.5 13.4 189 58-304 42-280 (283)
44 2pl2_A Hypothetical conserved 98.6 3.1E-07 1.1E-11 73.8 11.5 182 28-256 9-209 (217)
45 3sf4_A G-protein-signaling mod 98.6 9.3E-07 3.2E-11 77.1 15.5 260 28-304 13-335 (406)
46 3ro2_A PINS homolog, G-protein 98.6 2.9E-07 9.8E-12 77.8 11.8 260 29-305 10-332 (338)
47 1ouv_A Conserved hypothetical 98.6 2E-06 6.9E-11 71.2 16.7 213 28-306 10-252 (273)
48 3as5_A MAMA; tetratricopeptide 98.6 4.9E-07 1.7E-11 69.6 12.1 154 60-257 9-169 (186)
49 1xi4_A Clathrin heavy chain; a 98.6 1.6E-06 5.5E-11 85.5 17.6 98 195-302 1193-1306(1630)
50 3vtx_A MAMA; tetratricopeptide 98.6 1.3E-06 4.6E-11 67.6 13.5 155 135-304 4-169 (184)
51 2h6f_A Protein farnesyltransfe 98.6 1.3E-06 4.6E-11 76.4 14.3 217 27-302 100-344 (382)
52 2fo7_A Synthetic consensus TPR 98.6 9.4E-07 3.2E-11 64.0 11.3 130 138-305 3-132 (136)
53 3uq3_A Heat shock protein STI1 98.5 1.9E-06 6.3E-11 70.2 14.2 157 97-305 15-202 (258)
54 3nf1_A KLC 1, kinesin light ch 98.5 1.8E-06 6.1E-11 72.3 14.1 141 135-304 68-223 (311)
55 3ulq_A Response regulator aspa 98.5 5.2E-06 1.8E-10 72.4 17.5 228 33-304 112-367 (383)
56 2ond_A Cleavage stimulation fa 98.5 1E-05 3.5E-10 68.4 17.9 186 104-305 33-270 (308)
57 1xi4_A Clathrin heavy chain; a 98.5 8E-06 2.7E-10 80.7 18.4 226 28-297 1109-1376(1630)
58 3u4t_A TPR repeat-containing p 98.5 7E-06 2.4E-10 67.5 15.8 179 97-304 13-207 (272)
59 4abn_A Tetratricopeptide repea 98.4 2.7E-07 9.1E-12 83.3 7.0 189 57-302 100-318 (474)
60 1ouv_A Conserved hypothetical 98.4 4.9E-06 1.7E-10 68.8 14.3 187 58-306 5-216 (273)
61 2ond_A Cleavage stimulation fa 98.4 3.1E-06 1.1E-10 71.6 13.2 173 41-256 81-265 (308)
62 4g1t_A Interferon-induced prot 98.4 6.5E-05 2.2E-09 67.0 22.0 196 27-242 54-291 (472)
63 3vtx_A MAMA; tetratricopeptide 98.4 1E-06 3.6E-11 68.3 8.9 156 58-257 4-166 (184)
64 2ooe_A Cleavage stimulation fa 98.4 4.5E-05 1.5E-09 69.6 20.9 108 196-305 320-454 (530)
65 3edt_B KLC 2, kinesin light ch 98.4 5.7E-06 1.9E-10 68.1 13.6 164 4-225 22-197 (283)
66 2h6f_A Protein farnesyltransfe 98.4 1.8E-06 6.1E-11 75.6 10.3 191 60-302 98-302 (382)
67 4abn_A Tetratricopeptide repea 98.4 4.9E-06 1.7E-10 75.0 13.2 172 103-304 84-286 (474)
68 3q15_A PSP28, response regulat 98.3 3.6E-05 1.2E-09 66.9 17.0 107 185-304 248-364 (378)
69 3ro2_A PINS homolog, G-protein 98.3 4.6E-06 1.6E-10 70.3 10.8 225 63-304 9-291 (338)
70 2fo7_A Synthetic consensus TPR 98.3 4.8E-06 1.6E-10 60.1 9.4 117 97-256 11-127 (136)
71 2xm6_A Protein corresponding t 98.3 0.00012 4.1E-09 66.0 20.6 76 37-116 92-180 (490)
72 4g1t_A Interferon-induced prot 98.3 3.4E-05 1.2E-09 68.8 16.5 249 38-305 152-459 (472)
73 2xm6_A Protein corresponding t 98.3 0.00013 4.5E-09 65.8 20.4 250 29-306 116-433 (490)
74 3gw4_A Uncharacterized protein 98.2 3.6E-05 1.2E-09 60.2 14.4 162 99-304 4-175 (203)
75 3sf4_A G-protein-signaling mod 98.2 3.7E-06 1.3E-10 73.3 9.5 230 58-304 8-295 (406)
76 4gyw_A UDP-N-acetylglucosamine 98.2 8.9E-06 3E-10 77.0 12.2 152 97-304 19-173 (723)
77 1hz4_A MALT regulatory protein 98.2 0.00067 2.3E-08 58.5 23.3 159 137-304 94-281 (373)
78 2ifu_A Gamma-SNAP; membrane fu 98.2 7E-05 2.4E-09 63.2 15.6 184 73-303 29-222 (307)
79 4a1s_A PINS, partner of inscut 98.2 9.6E-06 3.3E-10 71.0 10.5 186 97-303 58-290 (411)
80 1qqe_A Vesicular transport pro 98.2 0.00022 7.4E-09 59.7 18.3 140 136-303 117-267 (292)
81 4i17_A Hypothetical protein; T 98.1 4.7E-05 1.6E-09 61.0 12.5 152 97-304 17-208 (228)
82 4gyw_A UDP-N-acetylglucosamine 98.1 8.7E-06 3E-10 77.1 9.0 152 60-257 10-170 (723)
83 2ooe_A Cleavage stimulation fa 98.1 0.00041 1.4E-08 63.2 19.3 132 171-304 321-491 (530)
84 2vsy_A XCC0866; transferase, g 98.0 4.2E-05 1.4E-09 70.4 12.4 153 100-305 2-157 (568)
85 3mv2_B Coatomer subunit epsilo 98.0 0.0001 3.5E-09 62.0 13.4 166 133-305 97-282 (310)
86 1qqe_A Vesicular transport pro 98.0 9.6E-05 3.3E-09 61.9 12.8 166 97-304 47-227 (292)
87 1hz4_A MALT regulatory protein 98.0 0.00021 7.2E-09 61.7 14.9 94 204-303 222-320 (373)
88 3urz_A Uncharacterized protein 97.9 4.4E-05 1.5E-09 60.5 8.6 152 97-304 14-185 (208)
89 1na0_A Designed protein CTPR3; 97.9 0.00023 7.8E-09 50.3 11.4 98 197-305 9-106 (125)
90 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00047 1.6E-08 54.2 14.2 130 139-305 9-150 (213)
91 2r5s_A Uncharacterized protein 97.9 0.0002 6.8E-09 54.9 11.6 140 97-256 16-168 (176)
92 3e4b_A ALGK; tetratricopeptide 97.8 0.0019 6.6E-08 57.6 19.1 268 29-307 8-353 (452)
93 2qfc_A PLCR protein; TPR, HTH, 97.8 0.00032 1.1E-08 58.6 13.2 171 61-272 77-271 (293)
94 3u3w_A Transcriptional activat 97.8 0.00089 3E-08 55.8 15.9 165 97-303 85-264 (293)
95 3q15_A PSP28, response regulat 97.8 0.00051 1.7E-08 59.6 14.2 169 97-304 111-289 (378)
96 3ulq_A Response regulator aspa 97.8 0.00062 2.1E-08 59.0 14.8 169 97-304 113-292 (383)
97 3qky_A Outer membrane assembly 97.8 0.00036 1.2E-08 57.0 12.2 153 97-305 25-224 (261)
98 3gyz_A Chaperone protein IPGC; 97.8 0.00063 2.2E-08 51.0 12.5 98 196-305 35-133 (151)
99 3qou_A Protein YBBN; thioredox 97.7 0.00055 1.9E-08 57.1 13.3 83 207-303 195-282 (287)
100 3u3w_A Transcriptional activat 97.7 0.0015 5.1E-08 54.5 15.9 165 65-272 81-271 (293)
101 4i17_A Hypothetical protein; T 97.7 0.0011 3.6E-08 52.9 13.3 106 185-305 26-146 (228)
102 3mv2_B Coatomer subunit epsilo 97.6 0.00033 1.1E-08 58.9 10.0 165 43-255 85-276 (310)
103 3ro3_A PINS homolog, G-protein 97.6 0.00082 2.8E-08 49.7 11.4 140 136-304 9-157 (164)
104 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.00037 1.3E-08 54.8 9.8 138 62-227 9-151 (213)
105 4gco_A Protein STI-1; structur 97.6 0.0009 3.1E-08 48.3 11.0 101 197-310 13-113 (126)
106 2vsy_A XCC0866; transferase, g 97.6 0.00022 7.6E-09 65.6 9.1 145 38-226 3-157 (568)
107 3gw4_A Uncharacterized protein 97.6 0.00018 6.1E-09 56.0 7.2 98 136-256 66-171 (203)
108 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0041 1.4E-07 51.7 16.1 169 97-303 85-264 (293)
109 1a17_A Serine/threonine protei 97.6 0.0006 2.1E-08 51.0 9.9 129 136-303 13-144 (166)
110 1na0_A Designed protein CTPR3; 97.6 0.00048 1.6E-08 48.5 8.8 93 136-256 9-101 (125)
111 2pzi_A Probable serine/threoni 97.6 0.00025 8.4E-09 66.9 9.2 168 97-291 401-583 (681)
112 2lni_A Stress-induced-phosphop 97.5 0.0012 4.2E-08 47.1 11.1 99 196-305 15-113 (133)
113 3qou_A Protein YBBN; thioredox 97.5 0.00094 3.2E-08 55.7 11.6 155 28-224 121-282 (287)
114 2pzi_A Probable serine/threoni 97.5 0.00064 2.2E-08 64.1 11.5 167 35-247 402-583 (681)
115 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0015 5E-08 55.0 12.7 59 198-256 156-219 (307)
116 2kck_A TPR repeat; tetratricop 97.5 0.0015 5E-08 45.0 10.3 100 196-306 5-107 (112)
117 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.0051 1.7E-07 49.0 14.8 95 210-306 109-214 (225)
118 1elw_A TPR1-domain of HOP; HOP 97.5 0.0019 6.5E-08 44.8 10.9 99 196-305 3-101 (118)
119 2vgx_A Chaperone SYCD; alterna 97.4 0.0018 6.1E-08 48.1 11.1 98 196-304 20-117 (148)
120 1elr_A TPR2A-domain of HOP; HO 97.4 0.0019 6.5E-08 45.8 10.9 101 197-305 4-108 (131)
121 2r5s_A Uncharacterized protein 97.4 0.00087 3E-08 51.3 9.5 146 139-304 9-172 (176)
122 3q49_B STIP1 homology and U bo 97.4 0.0024 8.1E-08 46.1 11.5 99 195-304 7-105 (137)
123 2lni_A Stress-induced-phosphop 97.4 0.0014 4.7E-08 46.8 10.1 96 133-256 13-108 (133)
124 3dra_A Protein farnesyltransfe 97.4 0.011 3.9E-07 49.7 16.9 222 30-304 39-286 (306)
125 2xcb_A PCRH, regulatory protei 97.4 0.0021 7.2E-08 47.1 11.1 98 196-304 17-114 (142)
126 2vyi_A SGTA protein; chaperone 97.4 0.0023 7.9E-08 45.3 10.9 99 196-305 11-109 (131)
127 3e4b_A ALGK; tetratricopeptide 97.4 0.0073 2.5E-07 53.8 16.0 210 59-306 141-388 (452)
128 4gco_A Protein STI-1; structur 97.4 0.00075 2.6E-08 48.7 7.8 92 97-232 23-114 (126)
129 2dba_A Smooth muscle cell asso 97.4 0.0032 1.1E-07 45.9 11.5 98 196-305 27-128 (148)
130 3upv_A Heat shock protein STI1 97.3 0.0029 1E-07 45.1 10.9 97 197-304 4-100 (126)
131 4ga2_A E3 SUMO-protein ligase 97.3 0.00039 1.3E-08 51.9 6.3 139 98-291 8-149 (150)
132 3n71_A Histone lysine methyltr 97.3 0.0024 8.1E-08 57.6 12.3 103 197-305 351-464 (490)
133 2e2e_A Formate-dependent nitri 97.3 0.0026 8.9E-08 48.4 11.1 98 196-305 43-144 (177)
134 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0026 9.1E-08 47.8 10.9 98 196-304 10-107 (164)
135 2vyi_A SGTA protein; chaperone 97.3 0.0013 4.6E-08 46.6 8.4 120 135-292 11-130 (131)
136 1a17_A Serine/threonine protei 97.3 0.00098 3.3E-08 49.8 8.0 117 97-256 23-141 (166)
137 4b4t_Q 26S proteasome regulato 97.3 0.0071 2.4E-07 53.0 14.5 189 97-303 14-243 (434)
138 2e2e_A Formate-dependent nitri 97.2 0.0011 3.6E-08 50.6 7.8 116 97-255 20-138 (177)
139 1p5q_A FKBP52, FK506-binding p 97.2 0.0027 9.2E-08 54.2 10.4 145 135-303 146-292 (336)
140 3urz_A Uncharacterized protein 97.1 0.002 6.8E-08 50.8 8.2 124 97-238 64-196 (208)
141 3qky_A Outer membrane assembly 97.1 0.011 3.8E-07 48.0 12.9 130 135-305 14-177 (261)
142 4ga2_A E3 SUMO-protein ligase 97.0 0.00034 1.2E-08 52.2 3.2 132 71-246 8-148 (150)
143 4e6h_A MRNA 3'-END-processing 97.0 0.045 1.5E-06 51.3 18.1 106 199-305 436-570 (679)
144 2xev_A YBGF; tetratricopeptide 97.0 0.013 4.4E-07 41.5 11.2 91 202-305 7-105 (129)
145 2kck_A TPR repeat; tetratricop 96.9 0.0038 1.3E-07 42.8 7.7 95 135-257 5-102 (112)
146 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.0068 2.3E-07 48.2 10.1 158 29-227 9-214 (225)
147 3gyz_A Chaperone protein IPGC; 96.9 0.0037 1.3E-07 46.7 7.6 94 136-257 36-129 (151)
148 1elr_A TPR2A-domain of HOP; HO 96.9 0.0083 2.8E-07 42.3 9.4 105 97-242 14-122 (131)
149 3ro3_A PINS homolog, G-protein 96.9 0.0049 1.7E-07 45.3 8.3 97 137-256 50-153 (164)
150 3rjv_A Putative SEL1 repeat pr 96.8 0.022 7.6E-07 44.8 12.4 166 43-257 5-193 (212)
151 1hxi_A PEX5, peroxisome target 96.8 0.0077 2.6E-07 42.9 8.6 93 199-304 19-113 (121)
152 4gcn_A Protein STI-1; structur 96.8 0.017 5.8E-07 41.4 10.6 102 97-238 18-122 (127)
153 2c2l_A CHIP, carboxy terminus 96.8 0.012 4.1E-07 48.7 11.0 90 135-225 3-100 (281)
154 3upv_A Heat shock protein STI1 96.8 0.0055 1.9E-07 43.6 7.7 87 97-225 14-100 (126)
155 3q49_B STIP1 homology and U bo 96.7 0.0092 3.1E-07 42.8 8.9 97 133-257 6-102 (137)
156 4gcn_A Protein STI-1; structur 96.7 0.016 5.3E-07 41.6 10.0 101 198-305 9-112 (127)
157 3k9i_A BH0479 protein; putativ 96.7 0.0013 4.3E-08 46.6 4.0 28 276-303 61-88 (117)
158 4e6h_A MRNA 3'-END-processing 96.7 0.011 3.7E-07 55.5 11.2 200 19-243 340-585 (679)
159 2dba_A Smooth muscle cell asso 96.7 0.026 9E-07 40.8 11.2 94 134-256 26-123 (148)
160 1elw_A TPR1-domain of HOP; HOP 96.7 0.0078 2.7E-07 41.5 7.9 94 135-256 3-96 (118)
161 1wao_1 Serine/threonine protei 96.7 0.0052 1.8E-07 55.2 8.4 116 97-256 16-134 (477)
162 2c2l_A CHIP, carboxy terminus 96.7 0.03 1E-06 46.3 12.4 97 196-304 3-100 (281)
163 2vgx_A Chaperone SYCD; alterna 96.6 0.0079 2.7E-07 44.5 7.8 94 136-257 21-114 (148)
164 2xcb_A PCRH, regulatory protei 96.6 0.0097 3.3E-07 43.5 7.9 94 136-257 18-111 (142)
165 3sz7_A HSC70 cochaperone (SGT) 96.5 0.011 3.7E-07 44.3 8.2 95 135-257 10-104 (164)
166 3rjv_A Putative SEL1 repeat pr 96.5 0.052 1.8E-06 42.6 12.6 28 135-166 17-44 (212)
167 2xev_A YBGF; tetratricopeptide 96.5 0.024 8.3E-07 40.0 9.8 95 97-233 12-110 (129)
168 3k9i_A BH0479 protein; putativ 96.5 0.0067 2.3E-07 42.7 6.6 106 99-243 2-108 (117)
169 1p5q_A FKBP52, FK506-binding p 96.5 0.022 7.5E-07 48.5 10.6 98 196-305 146-259 (336)
170 2fbn_A 70 kDa peptidylprolyl i 96.4 0.043 1.5E-06 42.3 11.4 95 199-303 40-149 (198)
171 2fbn_A 70 kDa peptidylprolyl i 96.4 0.028 9.4E-07 43.5 10.2 97 198-306 89-187 (198)
172 4b4t_Q 26S proteasome regulato 96.3 0.12 4E-06 45.1 14.9 193 32-257 12-241 (434)
173 3n71_A Histone lysine methyltr 96.3 0.024 8.2E-07 51.0 10.1 133 34-225 319-463 (490)
174 3q7a_A Farnesyltransferase alp 96.2 0.16 5.3E-06 43.4 14.4 231 29-304 59-330 (349)
175 1hxi_A PEX5, peroxisome target 96.1 0.0059 2E-07 43.5 4.4 87 97-225 27-113 (121)
176 3rkv_A Putative peptidylprolyl 96.1 0.082 2.8E-06 39.2 11.0 98 197-304 11-125 (162)
177 3qwp_A SET and MYND domain-con 96.1 0.063 2.1E-06 47.4 11.8 96 202-303 292-398 (429)
178 3qww_A SET and MYND domain-con 96.1 0.05 1.7E-06 48.1 11.1 90 209-304 310-410 (433)
179 4f3v_A ESX-1 secretion system 96.1 0.28 9.7E-06 40.5 14.7 109 185-305 121-237 (282)
180 2hr2_A Hypothetical protein; a 96.0 0.13 4.5E-06 38.5 11.3 98 199-304 13-130 (159)
181 1ihg_A Cyclophilin 40; ppiase 95.9 0.043 1.5E-06 47.4 9.5 125 137-297 224-362 (370)
182 1kt0_A FKBP51, 51 kDa FK506-bi 95.8 0.053 1.8E-06 48.3 10.1 134 136-303 268-413 (457)
183 2if4_A ATFKBP42; FKBP-like, al 95.7 0.067 2.3E-06 45.5 9.8 145 137-304 180-327 (338)
184 1wao_1 Serine/threonine protei 95.7 0.0083 2.8E-07 53.9 4.3 93 196-300 39-134 (477)
185 2uy1_A Cleavage stimulation fa 95.6 0.68 2.3E-05 41.5 16.6 171 123-304 201-412 (493)
186 2hr2_A Hypothetical protein; a 95.6 0.16 5.6E-06 38.0 10.3 105 97-240 21-150 (159)
187 4f3v_A ESX-1 secretion system 95.5 0.22 7.6E-06 41.1 11.8 115 139-257 105-233 (282)
188 3mkq_A Coatomer beta'-subunit; 95.4 0.043 1.5E-06 52.2 8.6 34 238-271 742-775 (814)
189 1kt0_A FKBP51, 51 kDa FK506-bi 95.4 0.091 3.1E-06 46.7 10.1 96 197-304 268-379 (457)
190 2l6j_A TPR repeat-containing p 95.4 0.0098 3.3E-07 40.8 3.0 59 196-255 3-61 (111)
191 3qww_A SET and MYND domain-con 95.4 0.093 3.2E-06 46.4 9.9 67 136-225 340-410 (433)
192 3rkv_A Putative peptidylprolyl 95.4 0.093 3.2E-06 38.9 8.7 98 136-257 11-122 (162)
193 3mkq_A Coatomer beta'-subunit; 95.3 0.16 5.4E-06 48.3 11.9 76 198-273 682-764 (814)
194 1ihg_A Cyclophilin 40; ppiase 95.1 0.096 3.3E-06 45.2 9.0 98 198-305 224-336 (370)
195 2kat_A Uncharacterized protein 95.1 0.088 3E-06 36.4 7.3 61 195-256 17-77 (115)
196 2l6j_A TPR repeat-containing p 95.1 0.043 1.5E-06 37.4 5.5 88 135-251 3-97 (111)
197 1na3_A Designed protein CTPR2; 95.1 0.17 5.9E-06 32.8 8.5 60 196-256 8-67 (91)
198 2kat_A Uncharacterized protein 94.8 0.064 2.2E-06 37.1 6.0 80 104-225 2-81 (115)
199 3ma5_A Tetratricopeptide repea 94.8 0.16 5.6E-06 34.2 7.8 61 196-257 6-66 (100)
200 1wy6_A Hypothetical protein ST 94.7 0.24 8.1E-06 35.8 8.4 113 195-308 37-157 (172)
201 2if4_A ATFKBP42; FKBP-like, al 94.6 0.081 2.8E-06 45.0 7.2 96 197-304 179-292 (338)
202 1klx_A Cysteine rich protein B 94.0 0.17 5.9E-06 36.6 6.8 89 203-307 31-128 (138)
203 3qwp_A SET and MYND domain-con 93.9 0.14 4.8E-06 45.2 7.3 78 136-236 329-413 (429)
204 3ma5_A Tetratricopeptide repea 93.8 0.22 7.6E-06 33.5 6.8 63 231-304 6-69 (100)
205 2uy1_A Cleavage stimulation fa 93.6 0.8 2.8E-05 41.1 11.8 172 28-225 217-412 (493)
206 1na3_A Designed protein CTPR2; 93.5 0.26 8.9E-06 31.9 6.6 81 135-243 8-88 (91)
207 3mkq_B Coatomer subunit alpha; 93.2 0.7 2.4E-05 35.1 9.0 89 207-301 15-114 (177)
208 3dra_A Protein farnesyltransfe 92.2 1.5 5.2E-05 36.5 10.9 182 71-302 44-247 (306)
209 3dss_A Geranylgeranyl transfer 91.8 2.1 7.1E-05 36.2 11.2 212 72-304 41-303 (331)
210 3mkq_B Coatomer subunit alpha; 90.7 4.3 0.00015 30.7 13.1 89 135-264 33-121 (177)
211 1zu2_A Mitochondrial import re 90.6 0.6 2.1E-05 34.8 6.0 93 208-304 13-119 (158)
212 1klx_A Cysteine rich protein B 90.5 2.3 7.9E-05 30.4 9.2 106 101-257 9-122 (138)
213 3q7a_A Farnesyltransferase alp 90.2 3.5 0.00012 35.1 11.2 173 71-292 65-258 (349)
214 2kc7_A BFR218_protein; tetratr 89.7 1.1 3.9E-05 29.4 6.6 51 204-256 7-59 (99)
215 1zu2_A Mitochondrial import re 89.6 0.47 1.6E-05 35.4 4.7 105 99-244 14-136 (158)
216 1pc2_A Mitochondria fission pr 89.2 2.2 7.5E-05 31.5 8.1 81 213-304 14-99 (152)
217 1dce_A Protein (RAB geranylger 87.9 5.2 0.00018 36.5 11.4 164 40-249 45-243 (567)
218 2uwj_G Type III export protein 86.8 1.6 5.6E-05 29.4 5.3 76 39-117 21-98 (115)
219 4fhn_B Nucleoporin NUP120; pro 86.3 6.4 0.00022 39.3 11.9 212 63-303 816-1048(1139)
220 2ff4_A Probable regulatory pro 86.2 2.4 8.1E-05 36.7 7.8 70 139-236 174-249 (388)
221 2v5f_A Prolyl 4-hydroxylase su 83.9 6.7 0.00023 26.3 7.9 76 134-234 3-81 (104)
222 1v54_E Cytochrome C oxidase po 83.6 1.4 4.7E-05 29.9 3.9 57 30-87 15-72 (109)
223 2p58_C Putative type III secre 83.3 1.7 6E-05 29.3 4.2 76 39-117 22-99 (116)
224 3bee_A Putative YFRE protein; 82.6 7 0.00024 25.8 7.4 51 197-249 6-60 (93)
225 3bee_A Putative YFRE protein; 82.0 3.8 0.00013 27.1 5.8 67 133-226 3-72 (93)
226 1dce_A Protein (RAB geranylger 81.9 23 0.00077 32.2 12.8 95 196-304 106-220 (567)
227 2kc7_A BFR218_protein; tetratr 80.3 4.2 0.00014 26.4 5.7 43 263-305 18-64 (99)
228 1pc2_A Mitochondria fission pr 80.2 15 0.00052 26.9 9.2 77 133-238 29-110 (152)
229 2y69_E Cytochrome C oxidase su 78.4 4.6 0.00016 29.0 5.3 45 42-87 71-115 (152)
230 2v5f_A Prolyl 4-hydroxylase su 78.2 12 0.0004 25.0 7.5 59 198-256 6-70 (104)
231 1wdy_A 2-5A-dependent ribonucl 76.4 7.2 0.00025 31.1 7.0 56 200-256 183-240 (285)
232 1nzn_A CGI-135 protein, fissio 75.7 19 0.00063 25.5 8.2 83 211-304 15-102 (126)
233 1v54_E Cytochrome C oxidase po 75.5 12 0.0004 25.4 6.4 44 212-255 25-68 (109)
234 1wy6_A Hypothetical protein ST 75.4 21 0.00071 25.9 9.2 60 197-257 91-150 (172)
235 3u64_A Protein TP_0956; tetrat 75.1 27 0.00093 28.8 9.8 99 197-308 154-272 (301)
236 3ly7_A Transcriptional activat 75.0 10 0.00035 32.5 7.6 124 130-256 188-334 (372)
237 3lvg_A Clathrin heavy chain 1; 74.5 0.044 1.5E-06 48.6 -7.1 80 58-154 53-134 (624)
238 1k1a_A B-cell lymphoma 3-encod 72.6 14 0.00047 28.6 7.7 14 71-84 17-30 (241)
239 2uwj_G Type III export protein 72.6 19 0.00066 24.3 7.2 42 263-306 57-98 (115)
240 2p58_C Putative type III secre 72.4 20 0.00067 24.3 7.6 42 263-306 58-99 (116)
241 3dss_A Geranylgeranyl transfer 72.3 41 0.0014 28.1 10.7 91 42-149 92-192 (331)
242 1k1a_A B-cell lymphoma 3-encod 69.8 19 0.00064 27.8 7.9 58 31-90 13-73 (241)
243 1wdy_A 2-5A-dependent ribonucl 68.0 12 0.00039 29.8 6.4 25 65-90 8-32 (285)
244 3u64_A Protein TP_0956; tetrat 66.1 39 0.0013 27.8 8.9 80 132-239 192-284 (301)
245 4gns_B Protein CSD3, chitin bi 64.5 38 0.0013 32.0 9.6 30 273-302 367-397 (754)
246 3ly7_A Transcriptional activat 64.3 24 0.00082 30.1 7.6 75 133-237 274-348 (372)
247 2y69_E Cytochrome C oxidase su 64.1 25 0.00087 25.2 6.4 43 213-255 69-111 (152)
248 4g8k_A 2-5A-dependent ribonucl 62.8 38 0.0013 27.8 8.8 43 45-89 39-85 (337)
249 4h7y_A Dual specificity protei 60.6 47 0.0016 24.4 9.5 105 195-310 11-128 (161)
250 2ff4_A Probable regulatory pro 60.3 36 0.0012 29.1 8.3 58 199-257 173-230 (388)
251 4b4t_R RPN7, 26S proteasome re 54.7 88 0.003 27.1 9.9 97 199-303 133-235 (429)
252 2fe3_A Peroxide operon regulat 53.8 52 0.0018 23.6 7.0 67 6-77 6-73 (145)
253 3eu9_A Huntingtin-interacting 52.4 74 0.0025 24.1 9.0 26 282-307 213-238 (240)
254 1nzn_A CGI-135 protein, fissio 52.3 56 0.0019 23.0 6.6 71 43-115 20-102 (126)
255 3lvg_A Clathrin heavy chain 1; 51.1 2.5 8.4E-05 37.8 -0.7 150 8-165 72-228 (624)
256 2nsz_A Programmed cell death p 50.2 41 0.0014 23.7 5.8 47 199-246 9-55 (129)
257 4gns_B Protein CSD3, chitin bi 49.0 1E+02 0.0036 29.1 9.8 52 97-167 347-398 (754)
258 1n11_A Ankyrin; clathrin, BAND 48.8 1.3E+02 0.0043 25.7 10.6 13 72-84 122-134 (437)
259 3hra_A Ankyrin repeat family p 47.9 32 0.0011 25.6 5.4 33 199-232 140-173 (201)
260 3kea_A K1L; tropism, ANK repea 47.2 19 0.00064 29.1 4.2 24 141-168 64-87 (285)
261 3kea_A K1L; tropism, ANK repea 46.4 23 0.0008 28.5 4.6 102 45-169 45-155 (285)
262 3b7b_A Euchromatic histone-lys 45.1 58 0.002 24.9 6.7 23 283-305 214-236 (237)
263 4b4t_R RPN7, 26S proteasome re 43.9 1.6E+02 0.0054 25.5 10.4 40 185-226 194-237 (429)
264 2ion_A PDCD4, programmed cell 43.2 57 0.002 23.7 5.8 46 199-245 11-56 (152)
265 4ets_A Ferric uptake regulatio 41.3 1E+02 0.0035 22.5 7.2 68 7-78 18-87 (162)
266 3ygs_P Procaspase 9; apoptosis 41.2 43 0.0015 22.2 4.5 39 260-298 52-90 (97)
267 1wgl_A TOLL-interacting protei 41.1 46 0.0016 19.9 4.1 24 288-311 35-58 (59)
268 2ijq_A Hypothetical protein; s 40.6 78 0.0027 23.4 6.1 55 249-304 37-103 (161)
269 2xig_A Ferric uptake regulatio 39.5 1E+02 0.0036 22.1 7.2 49 28-77 30-78 (150)
270 2o03_A Probable zinc uptake re 38.8 49 0.0017 23.2 4.8 48 202-249 15-62 (131)
271 1n11_A Ankyrin; clathrin, BAND 38.7 1.3E+02 0.0046 25.5 8.6 43 122-168 160-204 (437)
272 3eu9_A Huntingtin-interacting 37.1 1.3E+02 0.0045 22.6 8.1 44 45-89 23-68 (240)
273 3ctd_A Putative ATPase, AAA fa 36.4 1E+02 0.0034 23.9 6.3 51 199-249 34-87 (213)
274 4h7y_A Dual specificity protei 36.4 1.3E+02 0.0043 22.2 8.4 46 211-257 74-119 (161)
275 2chq_A Replication factor C sm 36.4 1.7E+02 0.0057 23.5 10.6 81 226-309 177-261 (319)
276 2w57_A Ferric uptake regulatio 34.7 1.1E+02 0.0036 22.0 6.1 50 28-78 20-70 (150)
277 3ffl_A Anaphase-promoting comp 33.8 1.4E+02 0.0049 22.1 8.3 98 200-303 23-149 (167)
278 3mwm_A ZUR, putative metal upt 33.7 45 0.0015 23.7 3.9 50 201-250 17-66 (139)
279 2ko4_A Mediator of RNA polymer 33.1 66 0.0022 20.5 3.9 45 258-302 16-62 (81)
280 3bge_A Predicted ATPase; struc 32.9 59 0.002 24.9 4.4 47 202-248 9-58 (201)
281 2o03_A Probable zinc uptake re 32.9 96 0.0033 21.6 5.5 49 28-77 14-62 (131)
282 3mwm_A ZUR, putative metal upt 32.2 86 0.0029 22.2 5.2 50 28-78 17-66 (139)
283 2cos_A Serine/threonine protei 31.4 31 0.0011 20.1 2.0 41 44-90 10-52 (54)
284 4b4t_P 26S proteasome regulato 31.3 2.6E+02 0.0089 24.3 13.2 189 100-303 29-245 (445)
285 1iqp_A RFCS; clamp loader, ext 30.6 2.1E+02 0.0072 23.0 9.8 81 226-309 185-269 (327)
286 3twr_A Tankyrase-2; ankyrin re 30.4 1.3E+02 0.0043 21.2 6.1 13 72-84 17-29 (165)
287 2r9g_A AAA ATPase, central reg 30.2 56 0.0019 25.1 3.9 47 202-249 16-65 (204)
288 1mzb_A Ferric uptake regulatio 30.0 1.1E+02 0.0036 21.6 5.4 50 28-78 21-71 (136)
289 2fe3_A Peroxide operon regulat 29.9 80 0.0027 22.5 4.7 49 201-249 25-73 (145)
290 3esl_A Checkpoint serine/threo 29.7 60 0.0021 25.0 4.1 65 101-182 93-157 (202)
291 4b93_B Ankyrin repeat domain-c 29.7 2.1E+02 0.007 22.6 8.7 8 208-215 193-200 (269)
292 1q02_A Sequestosome 1; helical 29.3 86 0.0029 18.1 4.2 40 43-85 10-49 (52)
293 1mzb_A Ferric uptake regulatio 29.1 74 0.0025 22.4 4.4 49 201-249 21-70 (136)
294 2f6m_A Suppressor protein STP2 28.9 1E+02 0.0035 18.8 4.2 46 199-245 4-49 (65)
295 2xig_A Ferric uptake regulatio 28.8 77 0.0026 22.8 4.5 51 199-249 28-78 (150)
296 3esl_A Checkpoint serine/threo 28.4 2E+02 0.0069 22.0 8.2 55 29-84 82-139 (202)
297 3eyy_A Putative iron uptake re 28.0 1.6E+02 0.0056 20.9 6.2 49 28-78 22-70 (145)
298 3hra_A Ankyrin repeat family p 27.7 1.8E+02 0.0061 21.2 9.2 149 143-310 9-172 (201)
299 4fhn_B Nucleoporin NUP120; pro 27.7 4.6E+02 0.016 26.0 13.1 110 185-305 831-967 (1139)
300 3o48_A Mitochondria fission 1 27.4 1.7E+02 0.0057 20.8 7.2 28 277-304 79-106 (134)
301 4b93_B Ankyrin repeat domain-c 27.3 33 0.0011 27.4 2.5 52 35-88 57-111 (269)
302 3ygs_P Procaspase 9; apoptosis 26.6 77 0.0026 20.9 3.8 18 195-212 66-83 (97)
303 4b4t_P 26S proteasome regulato 26.3 2.4E+02 0.0084 24.4 8.1 96 196-304 55-165 (445)
304 3aji_A 26S proteasome non-ATPa 25.9 1.6E+02 0.0055 22.1 6.3 15 71-85 48-62 (231)
305 2bbr_A Viral CAsp8 and FADD-li 25.8 65 0.0022 24.6 3.7 120 104-254 40-173 (195)
306 2rfa_A Transient receptor pote 25.7 2.1E+02 0.0072 21.4 7.1 51 204-255 158-217 (232)
307 2b7e_A PRE-mRNA processing pro 25.4 34 0.0012 20.5 1.6 37 213-249 2-39 (59)
308 2fu4_A Ferric uptake regulatio 25.4 1.3E+02 0.0043 18.7 5.9 49 28-77 20-69 (83)
309 3eyy_A Putative iron uptake re 23.9 81 0.0028 22.6 3.8 48 202-250 23-70 (145)
310 1uxc_A FRUR (1-57), fructose r 23.8 1.1E+02 0.0036 18.5 3.7 37 25-61 12-53 (65)
311 2wpv_A GET4, UPF0363 protein Y 23.0 3.2E+02 0.011 22.5 14.7 23 136-158 33-55 (312)
312 3eiq_C Programmed cell death p 22.5 1.9E+02 0.0066 24.4 6.3 47 199-246 219-265 (358)
313 2wvi_A Mitotic checkpoint seri 22.2 2.4E+02 0.0082 20.8 7.8 25 97-121 106-130 (164)
314 2ion_A PDCD4, programmed cell 22.0 2.1E+02 0.007 20.7 5.7 62 234-308 11-77 (152)
315 3ltm_A Alpha-REP4; protein eng 21.6 2.5E+02 0.0085 20.7 16.5 104 133-244 92-200 (211)
316 2p1h_A APAF-1, apoptotic prote 21.3 1.7E+02 0.0059 18.8 6.6 38 259-296 50-87 (94)
317 3r5e_A Transaldolase; pentose 21.3 88 0.003 26.5 3.9 47 101-147 310-356 (360)
318 3ltm_A Alpha-REP4; protein eng 21.3 2.5E+02 0.0086 20.7 19.2 148 133-302 30-182 (211)
319 2npu_A FKBP12-rapamycin comple 21.1 1.4E+02 0.005 20.9 4.4 48 206-255 49-97 (126)
320 4aez_C MAD3, mitotic spindle c 21.0 73 0.0025 24.9 3.1 63 104-183 131-193 (223)
321 4ets_A Ferric uptake regulatio 20.9 85 0.0029 23.0 3.4 51 200-250 35-87 (162)
322 2w57_A Ferric uptake regulatio 20.7 90 0.0031 22.5 3.5 48 202-249 21-69 (150)
323 3f6q_A Integrin-linked protein 20.6 91 0.0031 22.5 3.7 15 71-85 47-61 (179)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.6e-31 Score=240.65 Aligned_cols=190 Identities=15% Similarity=0.062 Sum_probs=132.2
Q ss_pred HHHHHHHHHhccCcch-hHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchH
Q 044412 44 ECVYATIVKTNANLDC-FLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTT 122 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 122 (311)
+.+...+.+.+..+.+ .+++.+|++| +| .|++++|+++|++|.+.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c-~k---------------------------~G~~~~A~~lf~~M~~~G----- 56 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMC-SK---------------------------KGDVLEALRLYDEARRNG----- 56 (501)
T ss_dssp --------------CHHHHHHHHHHHT-TT---------------------------SCCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHH-Hh---------------------------CCCHHHHHHHHHHHHHcC-----
Confidence 6777788888776655 4578888888 65 555666677777886655
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCCccc-----hHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcH
Q 044412 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES-----RRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDI 197 (311)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a-----~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~ 197 (311)
+.||..+||+||++|++.+..+++ .+-|.++|++|...++ .||.
T Consensus 57 ---------v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~----------------------~Pd~ 105 (501)
T 4g26_A 57 ---------VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV----------------------VPNE 105 (501)
T ss_dssp ---------CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC----------------------CCCH
T ss_pred ---------CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC----------------------CCCH
Confidence 799999999999999998876442 1124555555443222 5788
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC----C
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR----E 273 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~----~ 273 (311)
.|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++ |.++|++|. +
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~-------------A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK-------------AYEVDAHMVESEVV 172 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH-------------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH-------------HHHHHHHHHhcCCC
Confidence 88888888888888888888888888888888888888888888888777774 444444443 6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 274 KNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
||..||++||++|++.|++++|.++|++|++.|+.|+
T Consensus 173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 173 PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 8888888888888888888888888888888888886
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.6e-31 Score=239.97 Aligned_cols=210 Identities=12% Similarity=0.051 Sum_probs=166.3
Q ss_pred hhhhhcCCCCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCC
Q 044412 11 TSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN 90 (311)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~ 90 (311)
+...+.+....+.. ..+..+..+...|++.++.++|+.|.+.|++||..+||+||.+| ++.+..+.+
T Consensus 14 ~~~~~k~~~~spe~-~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c-~~~~~~~~~----------- 80 (501)
T 4g26_A 14 RKAKKKAIQQSPEA-LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC-SLAEAATES----------- 80 (501)
T ss_dssp ----------CHHH-HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-TTCCCCSSS-----------
T ss_pred HHHHHhcccCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HhCCchhhh-----------
Confidence 33344444443332 13444556666678888899999999999999999999999999 888765443
Q ss_pred eeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCC
Q 044412 91 VFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
.+.+.+++|.++|++|...| +.||..|||+||++|++.|++++ |.++|++|.+.+
T Consensus 81 -------~~~~~l~~A~~lf~~M~~~G--------------~~Pd~~tyn~lI~~~~~~g~~~~----A~~l~~~M~~~g 135 (501)
T 4g26_A 81 -------SPNPGLSRGFDIFKQMIVDK--------------VVPNEATFTNGARLAVAKDDPEM----AFDMVKQMKAFG 135 (501)
T ss_dssp -------SCCHHHHHHHHHHHHHHHTT--------------CCCCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHTT
T ss_pred -------hhcchHHHHHHHHHHHHHhC--------------CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcC
Confidence 25667899999999998776 79999999999999999999999 777777766544
Q ss_pred HhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 171 ~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
. .||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++
T Consensus 136 ~----------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 136 I----------------------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp C----------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred C----------------------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 3 689999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 044412 251 GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIH 289 (311)
Q Consensus 251 a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~ 289 (311)
|.++++++.+... +|+..||++++..|+..
T Consensus 194 A~~ll~~Mr~~g~---------~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 194 VYKTLQRLRDLVR---------QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTS---------SBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhCC---------CcCHHHHHHHHHHHhcC
Confidence 5444433322222 79999999999999874
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.1e-20 Score=175.64 Aligned_cols=276 Identities=9% Similarity=0.002 Sum_probs=216.2
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCC-----------------
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN----------------- 90 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~----------------- 90 (311)
..+..++..+|+.+++..+++.+.. .++++.+++.++.+| .+.|++++|.++|+++...+
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCL-VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHH-HHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHH-HHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 4567777788888888888887654 368899999999999 99999999999999654332
Q ss_pred --eeeeec----cccCCChhHHHHHHHHHHHCCCC-ch------------------------------------------
Q 044412 91 --VFVYHA----FSSLRHPLQAIAFYLYMLRAEVL-LT------------------------------------------ 121 (311)
Q Consensus 91 --~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~-p~------------------------------------------ 121 (311)
..+|+. +.+.|++++|+++|++|.+.+.. ++
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 455555 89999999999999999875421 11
Q ss_pred ---------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH--
Q 044412 122 ---------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-- 184 (311)
Q Consensus 122 ---------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-- 184 (311)
.+++.+.+ ..++..+|+.++.+|.+.|++++|.++..++.+.. ..+..+|+.++.+|.+.
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSING--LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTT--GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHcCcchHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCC
Confidence 01111111 13788899999999999999999444433333322 23667888888888876
Q ss_pred ---HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh-
Q 044412 185 ---AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY- 257 (311)
Q Consensus 185 ---a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~- 257 (311)
|.++|+++. ..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+.
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777887664 3468889999999999999999999999998742 33577999999999999999999999887
Q ss_pred --------------------hCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC
Q 044412 258 --------------------CRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE----NVRPN 310 (311)
Q Consensus 258 --------------------~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~P~ 310 (311)
.|+.++|.++|+++. ..+..+|+.+...|.+.|++++|.++|++|.+. +..|+
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 889999999999886 356889999999999999999999999999875 66664
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=4.1e-19 Score=164.92 Aligned_cols=245 Identities=8% Similarity=-0.001 Sum_probs=187.9
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC---CCeeeeec----ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE---PNVFVYHA----FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~----~~~ 99 (311)
...+..++..+|+.+++..+++.+.+.+. .+..+++.++.++ .+.|+.++|.++|+++.+ .+..+|+. +.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASL-HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 45677777778888888888888877653 3677788888888 888888888888877642 33444444 778
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC---CCCHhHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP---ERKFATWNT 176 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~---~~~~~~~~~ 176 (311)
.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++ |..+|+++. ..+..+|+.
T Consensus 386 ~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTM---------------DPQFGPAWIGFAHSFAIEGEHDQ----AISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp TTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHTTTTCSHHHHH
T ss_pred hccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCccchHHHHH
Confidence 88888888888887653 23457788889999999999999 555554432 246678888
Q ss_pred HHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC--HHHHHHHHHHH
Q 044412 177 MIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGSD--QVTMATVLSAC 242 (311)
Q Consensus 177 li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~a~ 242 (311)
+..+|.+. |.++|+++. ..+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 88888876 888888764 246788999999999999999999999988775 77887 77889999999
Q ss_pred hccCChhhHHHHHHhhCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.+.|++++|..++ +++. ..+..+|..+..+|.+.|++++|.++|+++.+.
T Consensus 527 ~~~g~~~~A~~~~-------------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 527 RKLKMYDAAIDAL-------------NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHH-------------HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHH-------------HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9988888665554 3332 347889999999999999999999999998863
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=8.9e-20 Score=172.14 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~ 212 (311)
.--..|||+||++||+.|++++ |.++|+.|.+.. .....||+.|||+||+|||+.|+
T Consensus 124 ~~~~~TynaLIdglcK~G~lee----A~~Lf~eM~~m~-------------------~kG~~PdvvTYNtLI~Glck~G~ 180 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPL----AHHLLVVHHGQR-------------------QKRKLLTLDMYNAVMLGWARQGA 180 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHSH-------------------HHHTTCCHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHh-------------------hcCCCCCHhHHHHHHHHHHhCCC
Confidence 3346799999999999999999 888876643210 01125788889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh-hhHHHHHHhhCChHHHHHHHhhcC----CCCchhHHHHHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL-DLGRGIQIYCRSLGRSLLVFFKLR----EKNLLCWNSITEALA 287 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~-~~a~~~~~~~~~~~~a~~~~~~~~----~p~~~~~~~li~~~~ 287 (311)
+++|.++|++|.+.|+.||..|||+||.++|+.|+. + .|.++|++|. .||..||++++.++.
T Consensus 181 ~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e-------------~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG-------------TIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHH-------------HHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHH-------------HHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999999999999999999999999888764 4 4555666665 688889998887766
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 044412 288 IHGFAHEALGMFDRMTYENVRP 309 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~~g~~P 309 (311)
+.+ +++..+++ ..++.|
T Consensus 248 R~~----vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 248 RAT----VLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHH----HHHHHGGG-CCCCCC
T ss_pred HHH----HHHHHHHh-CcccCC
Confidence 643 33334444 335554
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=169.15 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=91.7
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHH---hcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC-
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTK---KSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR- 272 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~- 272 (311)
..|||+||++||+.|++++|.++|.+|. +.|+.||..|||+||.+||+.|+++ +|.++|++|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~-------------eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK-------------ELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHH-------------HHHHHHHHHHH
Confidence 4689999999999999999999998876 4689999999999999999999888 5566666665
Q ss_pred ---CCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC
Q 044412 273 ---EKNLLCWNSITEALAIHGFA-HEALGMFDRMTYENVRPN 310 (311)
Q Consensus 273 ---~p~~~~~~~li~~~~~~g~~-~~a~~~~~~M~~~g~~P~ 310 (311)
+||+.|||+||+++|+.|+. ++|.++|++|.+.|+.||
T Consensus 194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence 79999999999999999985 789999999999999998
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=2e-14 Score=126.30 Aligned_cols=270 Identities=9% Similarity=0.066 Sum_probs=164.9
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC--CCCee-eeec----cccCC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ--EPNVF-VYHA----FSSLR 101 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~--~~~~~-~~~~----~~~~~ 101 (311)
.+..++..+++.+.+...+...++.. +.+..+|..+...+ .+.|++++|...|+++. .|+.. +|.. +.+.|
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 115 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVY-KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC
Confidence 33444445555555555554444432 33445555555555 55555555555555543 22221 1222 44455
Q ss_pred ChhHHHHHHHHHHHCCCCch----------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHH
Q 044412 102 HPLQAIAFYLYMLRAEVLLT----------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVS 159 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~----------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a 159 (311)
++++|++.|+++.+.. |+ ..++.+++. .+-+..+|+.+...|.+.|++++ |
T Consensus 116 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~----A 188 (388)
T 1w3b_A 116 DMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWL----A 188 (388)
T ss_dssp CSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHH----H
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHH----H
Confidence 5555555555544321 22 112222221 12235677777778888888888 4
Q ss_pred HHHhccCCC--C-CHhHHHHHHHHHHHH-----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 160 RRLFDEMPE--R-KFATWNTMIDAYARL-----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 160 ~~~~~~~~~--~-~~~~~~~li~~~~~~-----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
...|+++.+ | +...|..+-..+... |...|++.. .| +..+|+.+...|...|++++|++.|+++.+.+
T Consensus 189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 267 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 444443322 2 333454444444433 555554332 23 56778888888888888888888888887742
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC--CC-CchhHHHHHH
Q 044412 229 GSDQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR--EK-NLLCWNSITE 284 (311)
Q Consensus 229 ~p~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~--~p-~~~~~~~li~ 284 (311)
+-+..+|..+..++.+.|++++|...++. .|+.++|...|+++. .| +..+|..+..
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 22466788888888888888888887776 678888888888877 34 4678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 285 ALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 285 ~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
.|.+.|++++|...|+++.+ +.|+
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 99999999999999999986 4554
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.59 E-value=1.2e-13 Score=123.45 Aligned_cols=262 Identities=10% Similarity=0.006 Sum_probs=158.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~ 99 (311)
.......+...|+...+..+++.+.+.. +.+..++..+..++ .+.|++++|...|+++.+ |+ ...+.. +.+
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVF-LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4566777888899999999999988763 44688899999999 999999999999998753 33 333333 889
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCch---hHHHHHH------------HHHHhCCCCccchHHHHHHhc
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV---FVQTAMV------------DNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~---~~~~~ll------------~~~~~~g~~~~a~~~a~~~~~ 164 (311)
.|++++|++.|+++.+..- .+. ..+..+. ..|.+.|++++|.....++.+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNP---------------SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC---------------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999976431 111 2222222 224455555552222222221
Q ss_pred cCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HH
Q 044412 165 EMPERKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV-TM 235 (311)
Q Consensus 165 ~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~ 235 (311)
. ...+...+..+...|.+. |.+.|+++. ..+..+|+.+...|...|++++|+..|+++.+. .|+.. .+
T Consensus 172 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 248 (450)
T 2y4t_A 172 V-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCF 248 (450)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred h-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHH
Confidence 1 112333444444444443 444444332 123444555555555555555555555555432 22222 22
Q ss_pred HHH------------HHHHhccCChhhHHHHHHh-------------------------hCChHHHHHHHhhcC--CC-C
Q 044412 236 ATV------------LSACAHLGALDLGRGIQIY-------------------------CRSLGRSLLVFFKLR--EK-N 275 (311)
Q Consensus 236 ~~l------------i~a~~~~~~~~~a~~~~~~-------------------------~~~~~~a~~~~~~~~--~p-~ 275 (311)
..+ ..+|.+.|++++|...++. .|+.++|...+++.. .| +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 222 3444455555555444443 344556666666544 34 5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
...|..+..+|...|++++|...+++..+ +.|+
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 361 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEN 361 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcc
Confidence 78999999999999999999999999876 4454
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=2.4e-13 Score=119.40 Aligned_cols=253 Identities=11% Similarity=0.069 Sum_probs=148.3
Q ss_pred HHHHhhccChhhHHHHHHHHHHhccCcc-hhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCC
Q 044412 31 ANQLKKCSSIKELECVYATIVKTNANLD-CFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRH 102 (311)
Q Consensus 31 ~~~l~~~~~~~~~~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~ 102 (311)
...+-..|+++++.+.+..+.+.. |+ ...+..+-..+ .+.|+++.|...++...+ | +..+|.. +.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~-~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIH-FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 344567789999988888877653 44 44555666677 899999999999977642 3 3344444 889999
Q ss_pred hhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH-hHHHHHHHH
Q 044412 103 PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF-ATWNTMIDA 180 (311)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~-~~~~~li~~ 180 (311)
+++|++.|+++.+. .|+ ...|..+..+|.+.|++++|.....+..+. .|+. ..+..+-..
T Consensus 83 ~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 83 LQEAIEHYRHALRL----------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 99999999998763 233 445666666666666666633332222222 1222 222323223
Q ss_pred HHHH-----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC-------------------------
Q 044412 181 YARL-----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSG------------------------- 227 (311)
Q Consensus 181 ~~~~-----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------- 227 (311)
+... |.+.|+++. .| +..+|+.+...+...|++++|+..|+++.+.+
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3221 444444432 12 33445555555555555555555555544321
Q ss_pred -------CCC-CHHHHHHHHHHHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC---CCC
Q 044412 228 -------TGS-DQVTMATVLSACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR---EKN 275 (311)
Q Consensus 228 -------~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~---~p~ 275 (311)
+.| +..++..+..++...|++++|...++. .|+.++|...|+++. ..+
T Consensus 225 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 123 245555666666666666666655554 566666666666554 334
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..+|+.+...+...|++++|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666666666666666666654
No 10
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.50 E-value=5.9e-14 Score=123.29 Aligned_cols=219 Identities=11% Similarity=0.116 Sum_probs=84.9
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccCCCh
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHP 103 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~ 103 (311)
.....++..+|+++++.+.++.+ +++.+|..|..++ .+.|++++|.+.|... +|...|.. +...|++
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~-l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHH-HHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCH
Confidence 34567788999999998888877 4456999999999 9999999999999775 44445554 8888999
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
++|+++++..++. .+++.+.+.|+.+|.+.|++++ +.++++. |+..+|+.+-..|..
T Consensus 78 EeAi~yl~~ark~----------------~~~~~i~~~Li~~Y~Klg~l~e----~e~f~~~---pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 78 EELVKYLQMARKK----------------ARESYVETELIFALAKTNRLAE----LEEFING---PNNAHIQQVGDRCYD 134 (449)
T ss_dssp -----------------------------------------------CHHH----HTTTTTC---C--------------
T ss_pred HHHHHHHHHHHHh----------------CccchhHHHHHHHHHHhCCHHH----HHHHHcC---CcHHHHHHHHHHHHH
Confidence 9999977655442 4557889999999999999999 8888764 777899999999988
Q ss_pred H-----HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhh
Q 044412 184 L-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258 (311)
Q Consensus 184 ~-----a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~ 258 (311)
. |...|+.+ ..|..+.+++.+.|++++|.+.+.+. -++.||..++.+|...|+++.|......
T Consensus 135 ~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 135 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp --CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred cCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 7 99999987 48999999999999999999999988 3789999999999999999988543211
Q ss_pred CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 259 ~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+. .++.-...++..|.+.|++++|..+++...
T Consensus 203 ------------L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 203 ------------IV-VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp ------------TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ------------HH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 11 122223457888888888888888887754
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=2.1e-12 Score=115.30 Aligned_cols=228 Identities=11% Similarity=0.063 Sum_probs=179.9
Q ss_pred cchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHH
Q 044412 57 LDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWK 129 (311)
Q Consensus 57 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 129 (311)
.+...+..+...+ .+.|++++|..+|+++.+ | +...|.. +...|++++|++.|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 90 (450)
T 2y4t_A 24 ADVEKHLELGKKL-LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------------ 90 (450)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 4567888889999 999999999999998753 3 3333433 888999999999999987642
Q ss_pred hcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--C-CH---hHHHHHHHH------------HHHH-----HH
Q 044412 130 NGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--R-KF---ATWNTMIDA------------YARL-----AE 186 (311)
Q Consensus 130 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~-~~---~~~~~li~~------------~~~~-----a~ 186 (311)
+.+...+..+..+|.+.|++++ |...|+.+.. | +. ..+..+... +.+. |.
T Consensus 91 ---p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 91 ---MDFTAARLQRGHLLLKQGKLDE----AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4457889999999999999999 5555555433 2 23 555555444 3332 77
Q ss_pred HHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh------
Q 044412 187 LLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY------ 257 (311)
Q Consensus 187 ~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~------ 257 (311)
..|+++. ..+..++..+...|...|++++|+++|+++.+.. +.+..++..+..++...|++++|...++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777664 3477889999999999999999999999998752 45688999999999999999999988876
Q ss_pred ---------------------------hCChHHHHHHHhhcC--CCC-----chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 258 ---------------------------CRSLGRSLLVFFKLR--EKN-----LLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 258 ---------------------------~~~~~~a~~~~~~~~--~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.|+.++|...|+++. .|+ ...|..+...+.+.|++++|...++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 477778888888776 455 3478888999999999999999999987
Q ss_pred Hc
Q 044412 304 YE 305 (311)
Q Consensus 304 ~~ 305 (311)
+.
T Consensus 323 ~~ 324 (450)
T 2y4t_A 323 QM 324 (450)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=5.8e-11 Score=100.44 Aligned_cols=211 Identities=9% Similarity=0.020 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-
Q 044412 61 LAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP- 135 (311)
Q Consensus 61 ~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~- 135 (311)
..-.+.++| ...|+++.|..-++....|+..++.. +...++.++|++.++++...+ ..|+
T Consensus 36 ~~~~l~r~y-i~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~--------------~~P~~ 100 (291)
T 3mkr_A 36 RDVFLYRAY-LAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS--------------VDVTN 100 (291)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC--------------CCCSC
T ss_pred HHHHHHHHH-HHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--------------cCCCC
Confidence 334456777 77788888877776643343333333 667777888888888776543 2344
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC--CCcHhH---HHHHHH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP--AWDIRS---WTTMIT 205 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~--~~~~~~---y~~li~ 205 (311)
...+..+-..|...|++++ |...++. ..+...+..+...|.+. |...|+++. .|+... ...++.
T Consensus 101 ~~~~~~la~~~~~~g~~~~----Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDA----ALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS 174 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHH----HHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHH
Confidence 4444555567788888888 7777776 34555666666666664 666666664 344321 122334
Q ss_pred HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHHHH
Q 044412 206 SYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSITE 284 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~li~ 284 (311)
.+...|++++|+.+|+++.+. .+.+...++.+-.++.+.|++++|+..++. +.+. .| +..++..++.
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~------al~~-----~p~~~~~l~~l~~ 242 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE------ALDK-----DSGHPETLINLVV 242 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH-----CTTCHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh-----CCCCHHHHHHHHH
Confidence 444558999999999999886 466788899999999999999966665532 1111 34 5678999999
Q ss_pred HHHhcCChHH-HHHHHHHHHH
Q 044412 285 ALAIHGFAHE-ALGMFDRMTY 304 (311)
Q Consensus 285 ~~~~~g~~~~-a~~~~~~M~~ 304 (311)
.+...|+.++ +..+++++.+
T Consensus 243 ~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 243 LSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHH
Confidence 9999999876 5788888875
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.30 E-value=6.7e-11 Score=100.73 Aligned_cols=249 Identities=10% Similarity=0.010 Sum_probs=185.2
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~ 100 (311)
......+...|+...+..+++.+.+.. +.+...+..+...+ .+.|++++|..+++++.+ | +...|.. +...
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTL-VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHH-HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 456666777799999999999988765 33556677777888 899999999999988753 3 2333333 7778
Q ss_pred C-ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 101 R-HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 101 ~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
| ++++|++.|++..+.. +.+...|..+...|...|++++|.....+..+..+. +...+..+..
T Consensus 104 ~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE---------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC---------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 8 9999999999987642 345778999999999999999955554444444333 3345555666
Q ss_pred HHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHh
Q 044412 180 AYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG--------TGSDQVTMATVLSACA 243 (311)
Q Consensus 180 ~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~li~a~~ 243 (311)
.|... |.+.+++.. ..+...|..+...+...|++++|...|++..+.. .+.+..++..+..++.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 66554 777777654 2367789999999999999999999999987631 1444678899999999
Q ss_pred ccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 244 HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|++++|...++..- +. ...+...|..+...+...|++++|...+++..+
T Consensus 248 ~~g~~~~A~~~~~~a~------~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 248 KLKKYAEALDYHRQAL------VL----IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HTTCHHHHHHHHHHHH------HH----STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HhcCHHHHHHHHHHHH------hh----CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999997776654321 11 123677888999999999999999999988765
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2e-10 Score=104.06 Aligned_cols=58 Identities=3% Similarity=-0.075 Sum_probs=44.8
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccC
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQM 86 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m 86 (311)
...+..++...|+.+.+...++.+++.. +.+..++..+..++ .+.|++++|...|+++
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN-EGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH-HHHhhHHHHHHHHHHH
Confidence 4566677777788888888888888765 34556788888888 8889999998888665
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.26 E-value=3.1e-10 Score=98.50 Aligned_cols=261 Identities=11% Similarity=-0.010 Sum_probs=181.7
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~ 99 (311)
.......+...|+...+...++.+++.. +.+..++..+...+ .+.|++++|...|++..+ |+ ..++.. +..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQ-AENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 4566777788899999999999998875 34678899999999 999999999999988753 33 333433 889
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCC-CHhHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPER-KFATWNTMI 178 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~li 178 (311)
.|++++|++.|++..+.. |+.... .........++..+...|.+.|++++|.....+..+..+.. +..+|..+.
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYL---VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHH---HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999987632 110000 00000113344556788999999999555555555543331 566788787
Q ss_pred HHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 179 DAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 179 ~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
..|... |.+.|++.. ..+..+|+.+...|...|++++|+..|++..+.. +-+..++..+-.+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 777775 777777654 2467899999999999999999999999998752 3347889999999999999998
Q ss_pred HHHHHHhhCChHHHHHHHhhcCC--------CCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 251 GRGIQIYCRSLGRSLLVFFKLRE--------KNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 251 a~~~~~~~~~~~~a~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
|...++. +.++..+... .+...|..+-.++...|+.+.+..+..+
T Consensus 300 A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLT------ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHH------HHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHH------HHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8887754 3333222211 1467899999999999999998887664
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.25 E-value=3.3e-09 Score=95.95 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=40.5
Q ss_pred HHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCe-eeeec----cccCCCh
Q 044412 31 ANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNV-FVYHA----FSSLRHP 103 (311)
Q Consensus 31 ~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~----~~~~~~~ 103 (311)
...+...|+..++...+..+.+.. ||+.++..+..++ .+.|++++|...|+++.+ |+. ..|.. +.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACY-VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHH-HHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 334444555555555555555544 4555555555555 555666666555555431 221 11211 4455555
Q ss_pred hHHHHHHHHHH
Q 044412 104 LQAIAFYLYML 114 (311)
Q Consensus 104 ~~a~~~~~~m~ 114 (311)
++|+..|+++.
T Consensus 90 ~~A~~~~~~~~ 100 (514)
T 2gw1_A 90 ADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.24 E-value=9.9e-10 Score=94.38 Aligned_cols=249 Identities=10% Similarity=-0.032 Sum_probs=172.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCe------eeee-----
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV------FVYH----- 95 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~------~~~~----- 95 (311)
...+..++...|+...+...++...+.. +-+...+..+...+ .+.|++++|...|++..+.+. ..+.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL-LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence 4556666777788888888888877763 23557778888888 888889888888887654221 1110
Q ss_pred ---------c--cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhc
Q 044412 96 ---------A--FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 96 ---------~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
. +...|++++|++.|++..+. .+.+...+..+...|...|++++|.....+...
T Consensus 118 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEV---------------CVWDAELRELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 66788888888888887654 245678888899999999999995554444444
Q ss_pred cCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC--CC-cHhHHHH------------HHHHHHhCCChhHHHHHHHHHH
Q 044412 165 EMPERKFATWNTMIDAYARL-----AELLFNKMP--AW-DIRSWTT------------MITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 165 ~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~--~~-~~~~y~~------------li~~~~~~g~~~~a~~~~~~m~ 224 (311)
.. ..+..+|..+...+... |...|++.. .| +...+.. +...+.+.|++++|...+++..
T Consensus 183 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 261 (359)
T 3ieg_A 183 LK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 261 (359)
T ss_dssp TC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 23456777777777665 666666553 23 3333332 2556888999999999999988
Q ss_pred hcCCCCCHH-----HHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044412 225 KSGTGSDQV-----TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299 (311)
Q Consensus 225 ~~g~~p~~~-----t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 299 (311)
+.. |+.. .+..+-.++...|+++.|...++.. .+. ...+..+|..+...+...|++++|...|
T Consensus 262 ~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 262 KTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV------LQM----EPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH------HHh----CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 743 4422 2445667788888888666655321 111 1236788999999999999999999999
Q ss_pred HHHHHc
Q 044412 300 DRMTYE 305 (311)
Q Consensus 300 ~~M~~~ 305 (311)
++..+.
T Consensus 330 ~~a~~~ 335 (359)
T 3ieg_A 330 EAAQEH 335 (359)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 998863
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.22 E-value=1.3e-11 Score=108.45 Aligned_cols=178 Identities=15% Similarity=0.048 Sum_probs=56.6
Q ss_pred hccCChhHHHHhcccCCCCCeeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY 146 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~ 146 (311)
-+.|++++|.++++++..|+ +|.. +.+.|++++|++.|.. .+|...|..+++++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik--------------------a~D~~~y~~V~~~a 71 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK--------------------ADDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc--------------------CCCHHHHHHHHHHH
Confidence 56688999999999997775 6666 8999999999999953 35777999999999
Q ss_pred HhCCCCccchHHHHHHhccCCC--CCHhHHHHHHHHHHHH--HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHH
Q 044412 147 SYSNKFFESRRVSRRLFDEMPE--RKFATWNTMIDAYARL--AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNK 222 (311)
Q Consensus 147 ~~~g~~~~a~~~a~~~~~~~~~--~~~~~~~~li~~~~~~--a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~ 222 (311)
...|++++ |...++...+ ++..+.+.++.+|.++ -.++.+-...|+..+|+.+...|...|.+++|..+|..
T Consensus 72 e~~g~~Ee----Ai~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 72 NTSGNWEE----LVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp -----------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHH
T ss_pred HhCCCHHH----HHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999 6665554443 3456788888899887 33333444467888999999999999999999999997
Q ss_pred HHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044412 223 TKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298 (311)
Q Consensus 223 m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 298 (311)
+ ..|..|..++.+.|+++.|.+. +++. .++.+|..++.+|...|+++.|...
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea-------------~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDG-------------ARKA--NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHH-------------HHHH--TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHH-------------HHHc--CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 7 3788999999998888865554 3433 3788999999999999999999654
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.21 E-value=1.7e-09 Score=98.65 Aligned_cols=273 Identities=10% Similarity=0.007 Sum_probs=195.4
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC-CCCeeeee----------
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ-EPNVFVYH---------- 95 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~---------- 95 (311)
...+..++...|+...+...++...+.. +.+..++..+..++ .+.|++++|...|+.+. .|+.....
T Consensus 62 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (537)
T 3fp2_A 62 YSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN-ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLN 139 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHC-----------CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 4566677778889999999999888875 34667888888888 99999999998885442 11111000
Q ss_pred -----------------------------------------------------------c----ccc--------CCChh
Q 044412 96 -----------------------------------------------------------A----FSS--------LRHPL 104 (311)
Q Consensus 96 -----------------------------------------------------------~----~~~--------~~~~~ 104 (311)
. +.. .++++
T Consensus 140 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 140 KQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 02566
Q ss_pred HHHHHHHHHHHCCCC-ch--------------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchH
Q 044412 105 QAIAFYLYMLRAEVL-LT--------------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRR 157 (311)
Q Consensus 105 ~a~~~~~~m~~~~~~-p~--------------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 157 (311)
+|+++|+++.+..-. ++ ..++...+ ..|+...|..+...|...|++++|..
T Consensus 220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHH
Confidence 777777766543211 00 22233333 35667888889999999999999555
Q ss_pred HHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC
Q 044412 158 VSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG 229 (311)
Q Consensus 158 ~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 229 (311)
...+..+..+ .+..+|..+...+... |...|++.. .| +...|..+...+...|++++|.+.|++..+.. +
T Consensus 298 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 298 FFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 4444444322 3455677777777664 777776654 23 56789999999999999999999999998763 4
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHh---------------------------h----------CChHHHHHHHhhcC
Q 044412 230 SDQVTMATVLSACAHLGALDLGRGIQIY---------------------------C----------RSLGRSLLVFFKLR 272 (311)
Q Consensus 230 p~~~t~~~li~a~~~~~~~~~a~~~~~~---------------------------~----------~~~~~a~~~~~~~~ 272 (311)
.+...+..+-..+...|+++.|...++. . |+.++|...|++..
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 4567888999999999999999999888 1 88888999998876
Q ss_pred --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 273 --EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 273 --~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.| +...|..+...|...|++++|...|++..+.
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34 5678999999999999999999999998763
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.20 E-value=4.1e-10 Score=97.61 Aligned_cols=251 Identities=14% Similarity=0.050 Sum_probs=180.1
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~ 99 (311)
.......+...|+...+...++.+.+.. +.+..++..+..++ .+.|++++|.+.|++..+ | +..++.. +..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQ-AENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3466777888899999999999998764 34677888899999 999999999999988652 3 3333333 888
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHH---------------HHHHHHhCCCCccchHHHHHHhc
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA---------------MVDNYSYSNKFFESRRVSRRLFD 164 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~a~~~~~ 164 (311)
.|++++|++.|+++....- .+...+.. .+..+...|++++|.....+..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTP---------------AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp TTCHHHHHHHHHHHHHTST---------------TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc---------------CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999999999999876431 11111111 23344477888885555444444
Q ss_pred cCCCC-CHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH
Q 044412 165 EMPER-KFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM 235 (311)
Q Consensus 165 ~~~~~-~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 235 (311)
..+.. +..++..+...|.+. |...|++.. ..+..+|+.+...+...|++++|+..|++..+.. +.+..++
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 288 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSR 288 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 43332 456677777766664 666666553 2357789999999999999999999999988752 3457789
Q ss_pred HHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC-------CCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 236 ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-------KNLLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 236 ~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~-------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
..+..++.+.|++++|...++. +.++...... ....+|..+..+|...|+.++|..++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLE------ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH------HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999988877644 2222211111 1257899999999999999999988764
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.4e-09 Score=92.41 Aligned_cols=234 Identities=11% Similarity=-0.009 Sum_probs=169.8
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccC-ChhHHHHhcccCCC--C-Ceeeeec----ccc
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH-FIDYTILVFPQMQE--P-NVFVYHA----FSS 99 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g-~~~~a~~~~~~m~~--~-~~~~~~~----~~~ 99 (311)
..+...+...|+.+++..++..+.+.. +.+...+..+...+ ...| +++.|...|++..+ | +...|.. +..
T Consensus 60 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 60 PVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY-LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH-HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 456677788899999999999888864 33677888888888 9999 99999999988653 3 2333333 888
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
.|++++|++.|++..+.. +.+...+..+...|...|++++|.....+.++.-+ .+...+..+..
T Consensus 138 ~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 201 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLM---------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGV 201 (330)
T ss_dssp HTCHHHHHHHHHHHHHHT---------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhc---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 899999999999987642 34467788899999999999995554444444322 34567777777
Q ss_pred HHHHH-----HHHHHhhCC------------CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044412 180 AYARL-----AELLFNKMP------------AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242 (311)
Q Consensus 180 ~~~~~-----a~~~~~~m~------------~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 242 (311)
.+... |...+++.. ..+..+|..+...+...|++++|+..|++..+.. +.+...+..+-..+
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 280 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHH
Confidence 77664 555554332 1235689999999999999999999999998753 33677888888999
Q ss_pred hccCChhhHHHHHHhhCChHHHHHHHhhcC--CC-CchhHHHHHHHH-HhcCChH
Q 044412 243 AHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EK-NLLCWNSITEAL-AIHGFAH 293 (311)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~-~~~g~~~ 293 (311)
...|++++| ...|++.. .| +...+..+..++ ...|+.+
T Consensus 281 ~~~g~~~~A-------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 281 SLMGNFENA-------------VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTCHHHH-------------HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhccHHHH-------------HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 998888844 45555444 24 566777777777 3555543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.14 E-value=7.9e-10 Score=95.77 Aligned_cols=218 Identities=11% Similarity=0.023 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 59 CFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 59 ~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
...+..+-..+ .+.|++++|...|+++.+ |+ ...+.. +.+.|++++|++.|++..+..
T Consensus 64 ~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 128 (368)
T 1fch_A 64 HPQPFEEGLRR-LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------------- 128 (368)
T ss_dssp CSSHHHHHHHH-HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------------
Confidence 45677888888 999999999999988753 32 223322 888999999999999987642
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhH------------------HHHHHHHHHHH--HHHHHhh
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFAT------------------WNTMIDAYARL--AELLFNK 191 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~------------------~~~li~~~~~~--a~~~~~~ 191 (311)
+.+..++..+...|...|++++|.....+.+...+...... ...+. ...+. |...|++
T Consensus 129 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~ 206 (368)
T 1fch_A 129 -PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLA 206 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHH
Confidence 44678899999999999999996555555554433321111 11111 11111 6667766
Q ss_pred CC--CC---cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHH
Q 044412 192 MP--AW---DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLL 266 (311)
Q Consensus 192 m~--~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~ 266 (311)
.. .| +..+|..+...|...|++++|+..|++..+.. +.+..+|..+...+...|++++|...++.. .+
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~ 279 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA------LE 279 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HH
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HH
Confidence 54 23 47889999999999999999999999988752 335778999999999999999776665332 11
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 267 VFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 267 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
. ...+...|..+...|.+.|++++|...|++..+
T Consensus 280 ~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 280 L----QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp H----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 123567899999999999999999999999865
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.13 E-value=7.8e-10 Score=93.92 Aligned_cols=250 Identities=12% Similarity=0.090 Sum_probs=173.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~ 100 (311)
......+...|+..++..+++.+.+.. +.+...+..+...+ .+.|++++|...|++..+ | +...+.. +...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 455667778899999999999988864 33677888888899 999999999999988753 3 2233322 8889
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHH--------------HH-HHHhCCCCccchHHHHHHhcc
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM--------------VD-NYSYSNKFFESRRVSRRLFDE 165 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~a~~~~~~ 165 (311)
|++++|++.|++..+.. +.+...+..+ .. .+...|++++|.....+..+.
T Consensus 103 ~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ---------------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp TCHHHHHHHHHHHHHTS---------------TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---------------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999999987642 1111222221 11 266667777744444444333
Q ss_pred CCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 044412 166 MPERKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMAT 237 (311)
Q Consensus 166 ~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (311)
.+ .+...+..+...|... |.+.+++.. ..+..+|..+...+...|++++|...|++..+.. +.+..++..
T Consensus 168 ~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 245 (327)
T 3cv0_A 168 NP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYN 245 (327)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 22 2445666666666554 666665543 2357789999999999999999999999988753 345778889
Q ss_pred HHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--------CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--------NLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 238 li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
+...+...|++++|...++. +.+.......+ +...|..+..++...|+.++|..++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVR------AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhccHHHHHHHHHH------HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999988776643 22221110000 3678999999999999999999988754
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.13 E-value=2e-10 Score=99.75 Aligned_cols=218 Identities=13% Similarity=0.013 Sum_probs=157.2
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHh
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 130 (311)
+...+..+...+ .+.|++++|...|+++.+ | +..+|.. +.+.|++++|++.|++..+..
T Consensus 64 ~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKR-LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------------- 129 (365)
T ss_dssp TCTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred chhHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 345588888888 999999999999998753 3 3333333 888999999999999987642
Q ss_pred cCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHH----------HHHHHHHHHH-----HHHHHhhCC--
Q 044412 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATW----------NTMIDAYARL-----AELLFNKMP-- 193 (311)
Q Consensus 131 g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~----------~~li~~~~~~-----a~~~~~~m~-- 193 (311)
+.+..+|..+..+|...|++++|.....+.++..+. +...+ ..+...+.+. |...|++..
T Consensus 130 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 130 --PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 445788999999999999999944444444332211 11111 1122223221 666666554
Q ss_pred CC---cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhh
Q 044412 194 AW---DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270 (311)
Q Consensus 194 ~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~ 270 (311)
.| +..+|..+...|...|++++|++.|++..+.. +.+..+|..+..+|...|++++|...++. +.+.
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~--- 276 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR------ALEI--- 276 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH---
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHhc---
Confidence 23 57889999999999999999999999988752 34678899999999999999977666533 2111
Q ss_pred cCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 271 LREK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 271 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.| +..+|..+...|...|++++|...|++..+
T Consensus 277 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 277 --QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34 477899999999999999999999999875
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.09 E-value=6.1e-09 Score=89.39 Aligned_cols=243 Identities=7% Similarity=0.003 Sum_probs=169.7
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLR 101 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~ 101 (311)
.....+...|+..++...+....+.. +.++.++..+...+ .+.|++++|...|++..+ |+ ...+.. +...|
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVF-LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 45666778899999999999888864 34577888888999 999999999999988753 33 222322 88899
Q ss_pred ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC----chhHHHHH------------HHHHHhCCCCccchHHHHHHhcc
Q 044412 102 HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS----PVFVQTAM------------VDNYSYSNKFFESRRVSRRLFDE 165 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~----~~~~~~~l------------l~~~~~~g~~~~a~~~a~~~~~~ 165 (311)
++++|++.|++..+. .| +...+..+ ...+...|++++|.....+..+.
T Consensus 86 ~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKS----------------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp CHHHHHHHHHHHHTS----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc----------------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999998764 33 23333333 57899999999955554444443
Q ss_pred CCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHH
Q 044412 166 MPERKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ-VTMA 236 (311)
Q Consensus 166 ~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~ 236 (311)
-+ .+...+..+...+... |...+++.. ..+..+|..+...+...|++++|...|++..+. .|+. ..+.
T Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 226 (359)
T 3ieg_A 150 CV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFA 226 (359)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHH
Confidence 22 3445666666666654 677766553 236778888888999999999999999988764 3332 2222
Q ss_pred H------------HHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCCc-----hhHHHHHHHHHhcCChHHHHH
Q 044412 237 T------------VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKNL-----LCWNSITEALAIHGFAHEALG 297 (311)
Q Consensus 237 ~------------li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~~-----~~~~~li~~~~~~g~~~~a~~ 297 (311)
. +...+.+.|++++|... |++.. .|+. ..|..+...+...|++++|..
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSK-------------YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------------HHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 2 24446666666655544 44333 3432 235567789999999999999
Q ss_pred HHHHHHHc
Q 044412 298 MFDRMTYE 305 (311)
Q Consensus 298 ~~~~M~~~ 305 (311)
.+++..+.
T Consensus 294 ~~~~~~~~ 301 (359)
T 3ieg_A 294 ICSEVLQM 301 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.08 E-value=3.1e-09 Score=87.07 Aligned_cols=195 Identities=11% Similarity=-0.079 Sum_probs=138.7
Q ss_pred hhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 59 CFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 59 ~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
...+..+...+ ...|++++|.+.|++..+ | +...+.. +...|++++|++.|++..+..
T Consensus 37 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGY-LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHH-HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 34566666677 777788888777776542 2 2222222 677888888888888876542
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCC
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g 211 (311)
+.+...+..+...|...|++++ |...++.....+ ....+...|..+...+...|
T Consensus 102 -~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~~---------------------~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 102 -SRNARVLNNYGGFLYEQKRYEE----AYQRLLEASQDT---------------------LYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHTTCT---------------------TCTTHHHHHHHHHHHHHHTT
T ss_pred -cCcHHHHHHHHHHHHHHhHHHH----HHHHHHHHHhCc---------------------cCcccHHHHHHHHHHHHHcC
Confidence 3467788888899999999999 555554433200 00124667888889999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 044412 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGF 291 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (311)
++++|.+.|++..+.. +.+...+..+...+...|++++|...++..-. ....+...+..+...+...|+
T Consensus 156 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQ----------GGGQNARSLLLGIRLAKVFED 224 (252)
T ss_dssp CHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------TSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------hCcCcHHHHHHHHHHHHHccC
Confidence 9999999999988753 33577888899999999988866665533211 113456678888999999999
Q ss_pred hHHHHHHHHHHHHc
Q 044412 292 AHEALGMFDRMTYE 305 (311)
Q Consensus 292 ~~~a~~~~~~M~~~ 305 (311)
.++|..+++++.+.
T Consensus 225 ~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 225 RDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.06 E-value=1e-09 Score=88.54 Aligned_cols=190 Identities=10% Similarity=-0.064 Sum_probs=130.2
Q ss_pred CcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHH
Q 044412 56 NLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128 (311)
Q Consensus 56 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 128 (311)
++++..+..+-..+ .+.|++++|...|++..+ |+ ...+.. +.+.|++++|+..|++..+..
T Consensus 2 p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL-YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART----------- 69 (217)
T ss_dssp --CCHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 46677777777888 888899999888887643 32 222222 778899999999999886632
Q ss_pred HhcCCCchhHHHHHHHHHHhC-----------CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-c
Q 044412 129 KNGFSSPVFVQTAMVDNYSYS-----------NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-D 196 (311)
Q Consensus 129 ~~g~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~ 196 (311)
+-+...+..+-..|.+. |++++ |...++...+. .| +
T Consensus 70 ----P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~----A~~~~~~al~~------------------------~P~~ 117 (217)
T 2pl2_A 70 ----PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ----ALSVLKDAERV------------------------NPRY 117 (217)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH----HHHHHHHHHHH------------------------CTTC
T ss_pred ----CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHH----HHHHHHHHHHh------------------------Cccc
Confidence 33467888888889888 99999 55554442210 22 5
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-C
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-N 275 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~ 275 (311)
...|..+-..+...|++++|+..|++..+.. .+...+..+-.++...|++++|...++.. .+. .| +
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~-----~P~~ 184 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA------LEQ-----APKD 184 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHH-----STTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh-----CCCC
Confidence 6778888899999999999999999999877 78889999999999999999766655321 111 34 5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
...+..+...+...|++++|...+++.
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 678889999999999999999988764
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.01 E-value=1.2e-09 Score=88.87 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHh
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 130 (311)
....+..+-..+ .+.|+++.|...|++..+ |+ ...+.. +...|++++|++.|++..+..
T Consensus 22 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRG-SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 344555555566 666777777666666532 21 222211 566777788888887765532
Q ss_pred cCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhC
Q 044412 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 131 g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~ 210 (311)
+.+..++..+...|...|++++ |...++...+ ....+...|..+...+...
T Consensus 88 --~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 88 --SSAATAYYGAGNVYVVKEMYKE----AKDMFEKALR-----------------------AGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH-----------------------HTCCSHHHHHHHHHHHHHT
T ss_pred --CcchHHHHHHHHHHHHhccHHH----HHHHHHHHHH-----------------------hCCCCHHHHHHHHHHHHHh
Confidence 3456777888888888888888 4444443211 0123566788888888899
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHG 290 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g 290 (311)
|++++|..++++..+.. +.+...+..+...+...|+++.|...++.. .+. ...+..+|..+...|...|
T Consensus 139 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~----~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV------TEQ----DPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH------HHH----CTTCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CcccHHHHHHHHHHHHHcc
Confidence 99999999999987652 346778888888888888888776655332 111 1235678888899999999
Q ss_pred ChHHHHHHHHHHHHc
Q 044412 291 FAHEALGMFDRMTYE 305 (311)
Q Consensus 291 ~~~~a~~~~~~M~~~ 305 (311)
++++|...+++..+.
T Consensus 208 ~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 208 NREKALEMLDKAIDI 222 (243)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcc
Confidence 999999999988763
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.00 E-value=1.2e-08 Score=93.02 Aligned_cols=273 Identities=11% Similarity=-0.038 Sum_probs=156.8
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~ 100 (311)
......+...|+...+...++.+++.. +.++..+..+..++ .+.|++++|.+.|++..+ |+ ...+.. +...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACY-ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 455666778899999999999998875 34778899999999 999999999999998753 43 222222 8888
Q ss_pred CChhHHHHHHHHHHHCCCCch----------------HHHHHHHH------hcCCCchh---------------------
Q 044412 101 RHPLQAIAFYLYMLRAEVLLT----------------TVHGQVWK------NGFSSPVF--------------------- 137 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~~~------~g~~~~~~--------------------- 137 (311)
|++++|++.|+.+....-.++ ..++.... ....|+..
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 999999999964421111000 00111100 00011111
Q ss_pred ---------HHHHHHHHHHhC--------CCCccchHHHHHHhccCCCCCHhH-------HHHHHHHHHHH-----HHHH
Q 044412 138 ---------VQTAMVDNYSYS--------NKFFESRRVSRRLFDEMPERKFAT-------WNTMIDAYARL-----AELL 188 (311)
Q Consensus 138 ---------~~~~ll~~~~~~--------g~~~~a~~~a~~~~~~~~~~~~~~-------~~~li~~~~~~-----a~~~ 188 (311)
....+...+... |++++|..+..++++.-+. +... |..+-..+... |...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111111111111 2455533333333322221 1111 22222222111 4444
Q ss_pred HhhCC--CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh---------
Q 044412 189 FNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY--------- 257 (311)
Q Consensus 189 ~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~--------- 257 (311)
|++.. .|+...|..+...+...|++++|++.|++..+.. +.+..+|..+...+...|+++.|...++.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 266 LQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 44433 3445566666666666677777777776666532 22455666666666666777766666665
Q ss_pred ------------hCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 258 ------------CRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 258 ------------~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|+.++|...|++.. ..+...|..+...+...|++++|...|++..+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666667777776655 33466888888888899999999988888764
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.99 E-value=1.3e-08 Score=81.30 Aligned_cols=195 Identities=10% Similarity=-0.103 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 59 CFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 59 ~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
+..+..+...+ .+.|++++|.+.|++..+ | +...+.. +...|++++|++.|++..+.
T Consensus 8 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------- 71 (225)
T 2vq2_A 8 SNIKTQLAMEY-MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--------------- 71 (225)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------------
Confidence 34555555556 666666666666655432 2 1222222 55677778888888777653
Q ss_pred CCCchhHHHHHHHHHHhC-CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhC
Q 044412 132 FSSPVFVQTAMVDNYSYS-NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~-g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~ 210 (311)
.+.+..++..+...|... |++++|.....+..+ . +. ...+...|..+...+...
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~--~~----------------------~~~~~~~~~~l~~~~~~~ 126 (225)
T 2vq2_A 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D--PT----------------------YPTPYIANLNKGICSAKQ 126 (225)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S--TT----------------------CSCHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C--cC----------------------CcchHHHHHHHHHHHHHc
Confidence 234577888899999999 999994444444433 0 10 012356788888999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC-CCchhHHHHHHHHHhc
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-KNLLCWNSITEALAIH 289 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~-p~~~~~~~li~~~~~~ 289 (311)
|++++|++.|++..+.. +.+...+..+...+...|++++|...++.. .+.. . .+...+..+...+...
T Consensus 127 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 127 GQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKY------QSRV----EVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHH----CSCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHH------HHhC----CCCCHHHHHHHHHHHHhc
Confidence 99999999999988753 334778888888999999988776665331 1110 2 4566788888888999
Q ss_pred CChHHHHHHHHHHHHc
Q 044412 290 GFAHEALGMFDRMTYE 305 (311)
Q Consensus 290 g~~~~a~~~~~~M~~~ 305 (311)
|+.++|..+++.+.+.
T Consensus 196 ~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999988753
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.99 E-value=4.7e-09 Score=89.06 Aligned_cols=220 Identities=9% Similarity=-0.033 Sum_probs=157.1
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHh
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 130 (311)
+...+-.+...+ .+.|++++|..+|+++.+ |+ ...+.. +.+.|++++|++.|++..+.
T Consensus 20 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSM-LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-------------- 84 (327)
T ss_dssp GSSCHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------
Confidence 444556667778 899999999999988753 33 223322 88899999999999998764
Q ss_pred cCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHH-------------HH--HHH-----HHHHHHh
Q 044412 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI-------------DA--YAR-----LAELLFN 190 (311)
Q Consensus 131 g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li-------------~~--~~~-----~a~~~~~ 190 (311)
.+.+..++..+...|...|++++|.....+..+.-+. +...+..+. .. +.. .|.+.++
T Consensus 85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 2446788999999999999999955555555543322 111222220 11 111 1666665
Q ss_pred hCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHH
Q 044412 191 KMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLV 267 (311)
Q Consensus 191 ~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~ 267 (311)
+.. ..+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|...++.. .+.
T Consensus 163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~ 235 (327)
T 3cv0_A 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA------LDI 235 (327)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHc
Confidence 543 2367889999999999999999999999998753 345778999999999999999776665332 111
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 268 FFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...+...|..+...+...|++++|...+++..+.
T Consensus 236 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 236 ----NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1235678999999999999999999999998753
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.98 E-value=1e-08 Score=86.60 Aligned_cols=191 Identities=9% Similarity=0.076 Sum_probs=129.2
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC----CCCeeeeec-----ccc
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ----EPNVFVYHA-----FSS 99 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~-----~~~ 99 (311)
.+...+-..|+.+.+..-++. .-+|+..++..+...+ .+.++.+.|.+.++++. .|+...+.. +..
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~-~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL-ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH-HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 344556666666666443322 2456777778888888 88888888888888753 244333222 778
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--CCHhHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATWNTM 177 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~~~l 177 (311)
.|++++|++.|++ +.+...+..+...|.+.|++++ |...++.+.+ |+.. ...+
T Consensus 114 ~g~~~~Al~~l~~--------------------~~~~~~~~~l~~~~~~~g~~~~----A~~~l~~~~~~~p~~~-~~~l 168 (291)
T 3mkr_A 114 DQNPDAALRTLHQ--------------------GDSLECMAMTVQILLKLDRLDL----ARKELKKMQDQDEDAT-LTQL 168 (291)
T ss_dssp TTCHHHHHHHHTT--------------------CCSHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHCTTCH-HHHH
T ss_pred CCCHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhhCcCcH-HHHH
Confidence 8888888888764 2355677788888888888888 4444444332 3321 1222
Q ss_pred HHHHH-------HH--HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 044412 178 IDAYA-------RL--AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 178 i~~~~-------~~--a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 245 (311)
..++. +. |..+|+++. ..+...|+.+-.++.+.|++++|+..|++..+.. +-+..++..+...+...
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~ 247 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHL 247 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 22221 11 777776664 2477889999999999999999999999988752 33677899999999998
Q ss_pred CChhh
Q 044412 246 GALDL 250 (311)
Q Consensus 246 ~~~~~ 250 (311)
|+.++
T Consensus 248 g~~~e 252 (291)
T 3mkr_A 248 GKPPE 252 (291)
T ss_dssp TCCHH
T ss_pred CCCHH
Confidence 88864
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.1e-09 Score=87.00 Aligned_cols=218 Identities=10% Similarity=-0.047 Sum_probs=137.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHHH
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAI 107 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~ 107 (311)
......+...|+...+...+....+.. .+...+..+..++ .+.|++++|.+.+++..+
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~------------------- 66 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAE-YEKGEYETAISTLNDAVE------------------- 66 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHH-HHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHH-HHcccHHHHHHHHHHHHH-------------------
Confidence 344555666777788888888777777 6777777777777 777777777776654321
Q ss_pred HHHHHHHHCCCCchHHHHHHHHhcCCCc----hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 108 AFYLYMLRAEVLLTTVHGQVWKNGFSSP----VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 108 ~~~~~m~~~~~~p~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
+... ..++ ..+|..+...|.+.|++++|.....+....- |+...+ ....+
T Consensus 67 -~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~----~~~~~ 120 (258)
T 3uq3_A 67 -QGRE-------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADIL----TKLRN 120 (258)
T ss_dssp -HHHH-------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH----HHHHH
T ss_pred -hCcc-------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHHH----HHHhH
Confidence 1100 1111 3444555555555555555222222222211 111110 00011
Q ss_pred H--HHHHHhhCC--C-CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhh
Q 044412 184 L--AELLFNKMP--A-WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYC 258 (311)
Q Consensus 184 ~--a~~~~~~m~--~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~ 258 (311)
. |...++... . .+...|..+...+...|++++|+..|++..+.. +.+..+|..+..++...|++++|...++..
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 333333322 2 245678888999999999999999999998753 346788999999999999999776665432
Q ss_pred CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 259 ~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+. ...+...|..+-..+...|++++|...+++..+
T Consensus 200 ------l~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 ------IEK----DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ------HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHh----CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 123567899999999999999999999998765
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.93 E-value=1.9e-07 Score=77.10 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=163.4
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeee----eec----cc
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFV----YHA----FS 98 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~----~~~----~~ 98 (311)
.....+...|+.+.+...+....+... .+...+..+...+ .+.|++++|...+++..+ ++... |.. +.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCY-YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHH-HHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 456667778899999999988887642 3455788888888 999999999999987643 22221 222 88
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li 178 (311)
..|++++|++.|+...+.. +.+..+|..+-..|...|++++ |...++...+.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~al~~~-------- 138 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD---------------TTRLDMYGQIGSYFYNKGNFPL----AIQYMEKQIRPT-------- 138 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS---------------TTCTHHHHHHHHHHHHTTCHHH----HHHHHGGGCCSS--------
T ss_pred HcccHHHHHHHHHHHHhcC---------------cccHHHHHHHHHHHHHccCHHH----HHHHHHHHhhcC--------
Confidence 8899999999999887642 4456788999999999999999 777777765422
Q ss_pred HHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCC---hhhHHHH
Q 044412 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGA---LDLGRGI 254 (311)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~---~~~a~~~ 254 (311)
..+...|..+-..+-..+++++|++.|++..+. .|+ ...+..+-.++...|+ .+.|...
T Consensus 139 ---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 139 ---------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp ---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred ---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 224566666662333456999999999999875 344 6677777777777777 7767665
Q ss_pred HHhhCChHHHHHHHhhcCCCC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 255 QIYCRSLGRSLLVFFKLREKN----LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
++ .+.++....+.++ ...|..+-..|...|++++|...+++..+.
T Consensus 202 ~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 202 YE------KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HH------HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 53 3333333222221 257888999999999999999999998763
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.90 E-value=3.8e-08 Score=82.76 Aligned_cols=232 Identities=7% Similarity=-0.032 Sum_probs=142.5
Q ss_pred hcCCCCCchhh-hHHHHHHHHhhccChhhHHHHHHHHHHh-------ccCcchhHHHHHHHHHhhccCChhHHHHhcccC
Q 044412 15 KNSFPTSVSFI-RIHIIANQLKKCSSIKELECVYATIVKT-------NANLDCFLAKQFISFCTSRFHFIDYTILVFPQM 86 (311)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~~~m~~~-------g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m 86 (311)
+...++.+... ....+...+...|+...+...+....+. ..+....++..+...+ ...|++++|...+
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~--- 92 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-RDQNKYKDAANLL--- 92 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-HHTTCHHHHHHHH---
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHH---
Confidence 33444444432 2445556666777888887777766653 2233445666667777 7777777776665
Q ss_pred CCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccC
Q 044412 87 QEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~ 166 (311)
+++++++++..... ......++..+...|...|++++ |...++..
T Consensus 93 -----------------~~al~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a 137 (311)
T 3nf1_A 93 -----------------NDALAIREKTLGKD--------------HPAVAATLNNLAVLYGKRGKYKE----AEPLCKRA 137 (311)
T ss_dssp -----------------HHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHTTTCHHH----HHHHHHHH
T ss_pred -----------------HHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHHHHcCcHHH----HHHHHHHH
Confidence 44555554442111 12235678889999999999999 55555542
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHhhC--CC--CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc------CCCCC-HHHH
Q 044412 167 PERKFATWNTMIDAYARLAELLFNKM--PA--WDIRSWTTMITSYSQNKQFREALDAFNKTKKS------GTGSD-QVTM 235 (311)
Q Consensus 167 ~~~~~~~~~~li~~~~~~a~~~~~~m--~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~ 235 (311)
.++.... .. .....|..+...+...|++++|+++|++..+. +-.|+ ..++
T Consensus 138 -------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 138 -------------------LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp -------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred -------------------HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1222211 11 13456777778888888888888888887653 22332 3467
Q ss_pred HHHHHHHhccCChhhHHHHHHhhCChH------------------------------------HHHHHHhhcC--CC-Cc
Q 044412 236 ATVLSACAHLGALDLGRGIQIYCRSLG------------------------------------RSLLVFFKLR--EK-NL 276 (311)
Q Consensus 236 ~~li~a~~~~~~~~~a~~~~~~~~~~~------------------------------------~a~~~~~~~~--~p-~~ 276 (311)
..+...+...|++++|...++..-... ++...++... .| +.
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence 777788888888888887776522111 1111111111 11 34
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+|..+...|.+.|++++|..+|++..+
T Consensus 279 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 279 TTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999998765
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.90 E-value=3.2e-08 Score=81.82 Aligned_cols=218 Identities=9% Similarity=-0.074 Sum_probs=138.9
Q ss_pred hccChhhHHHHHHHHHHhcc---CcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCCChhH
Q 044412 36 KCSSIKELECVYATIVKTNA---NLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLRHPLQ 105 (311)
Q Consensus 36 ~~~~~~~~~~l~~~m~~~g~---~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~~~~~ 105 (311)
..++.+.+...++.+.+.+. +.+..++..+...+ ...|++++|...|++..+ | +...|.. +...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLY-DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH-HHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34667777888888887642 12467788888888 999999999999988653 3 2333333 888899999
Q ss_pred HHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHH
Q 044412 106 AIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185 (311)
Q Consensus 106 a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a 185 (311)
|++.|++..+.. +.+..++..+..+|.+.|++++ |...++...+.
T Consensus 96 A~~~~~~al~~~---------------~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~---------------- 140 (275)
T 1xnf_A 96 AYEAFDSVLELD---------------PTYNYAHLNRGIALYYGGRDKL----AQDDLLAFYQD---------------- 140 (275)
T ss_dssp HHHHHHHHHHHC---------------TTCTHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhcC---------------ccccHHHHHHHHHHHHhccHHH----HHHHHHHHHHh----------------
Confidence 999999887642 3457888999999999999999 55554442210
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHH
Q 044412 186 ELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSL 265 (311)
Q Consensus 186 ~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~ 265 (311)
.|+...+...+..+...|++++|...+.+.... .+++...+. +...+...++.+.|...+...-......
T Consensus 141 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (275)
T 1xnf_A 141 --------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL 210 (275)
T ss_dssp --------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH
T ss_pred --------CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccc
Confidence 122222223333445557888888888766654 233433443 5555666666665544443322111100
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 266 LVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 266 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
. ..+...|..+...|...|++++|...|++....
T Consensus 211 ~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 211 A------EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp H------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred c------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 0 012456777777888888888888888877653
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.83 E-value=4.9e-08 Score=79.79 Aligned_cols=187 Identities=6% Similarity=-0.040 Sum_probs=141.8
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~ 100 (311)
..+...+...|+...+...++...+.. +.+...+..+...+ .+.|++++|.+.|++..+ | +...+.. +...
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVF-QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 455566778899999999999888764 34677888888999 999999999999988652 3 3333332 8889
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
|++++|++.|++..+.+. .+.+...+..+...|.+.|++++ |...++...+.
T Consensus 119 g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~----------- 170 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTL-------------YPERSRVFENLGLVSLQMKKPAQ----AKEYFEKSLRL----------- 170 (252)
T ss_dssp TCHHHHHHHHHHHTTCTT-------------CTTHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHHhCcc-------------CcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhc-----------
Confidence 999999999999866221 23356788889999999999999 55555442110
Q ss_pred HHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
...+...|..+...+...|++++|...|++..+. .+.+...+..+...+...|+.+.|...++.
T Consensus 171 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 171 ------------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp ------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1125677888999999999999999999998764 235677788888889999999877666543
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.80 E-value=9.5e-08 Score=76.24 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=117.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|++.|++..+. .+.+...+..+...|...|++++ |...++....
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~-------- 70 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKS---------------DPKNELAWLVRAEIYQYLKVNDK----AQESFRQALS-------- 70 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH--------
T ss_pred HHHHhhHHHHHHHHHHHHHh---------------CccchHHHHHHHHHHHHcCChHH----HHHHHHHHHH--------
Confidence 56778888888888887653 23456778888888888888888 5544443211
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhC-CChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN-KQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
....+..+|..+...+... |++++|++.+++..+.+..|+ ...+..+..++...|++++|...
T Consensus 71 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 71 ---------------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp ---------------HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0123567888899999999 999999999999988444454 56788888999999999977666
Q ss_pred HHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 255 QIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
++.. .+. ...+...+..+...+...|++++|..++++..+.
T Consensus 136 ~~~~------~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 136 LKRS------LAA----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHH------HHH----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHH------HHh----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5432 111 1234778999999999999999999999998763
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.69 E-value=8.1e-08 Score=84.44 Aligned_cols=258 Identities=10% Similarity=0.007 Sum_probs=169.5
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcch----hHHHHHHHHHhhccCChhHHHHhcccCCC-----CC----eeeee
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDC----FLAKQFISFCTSRFHFIDYTILVFPQMQE-----PN----VFVYH 95 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~ 95 (311)
.....+...|+..++...++...+.+.. +. .++..+-..+ ...|++++|...+++..+ .+ ...+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAY-FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 4455667778999999999998887432 22 4778888888 999999999999877642 11 11111
Q ss_pred c----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCC-----------------Cc
Q 044412 96 A----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNK-----------------FF 153 (311)
Q Consensus 96 ~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~-----------------~~ 153 (311)
. +...|++++|++.|++..+.. .+.+-.+ ...++..+-..|...|+ ++
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA----------RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH----------HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH----------HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 1 888999999999999875421 1112122 25578888889999999 88
Q ss_pred cchHHHHHHhccC---CCC--CHhHHHHHHHHHHHH-----HHHHHhhCC-------CC--cHhHHHHHHHHHHhCCChh
Q 044412 154 ESRRVSRRLFDEM---PER--KFATWNTMIDAYARL-----AELLFNKMP-------AW--DIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 154 ~a~~~a~~~~~~~---~~~--~~~~~~~li~~~~~~-----a~~~~~~m~-------~~--~~~~y~~li~~~~~~g~~~ 214 (311)
+|.....+.++.. ..+ ...++..+-..|... |.+.+++.. .+ ...+|..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 8444333322211 111 112444444444443 555554432 11 1237888888899999999
Q ss_pred HHHHHHHHHHhcC--C--C-CCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC--CCchhHHHHHHHHH
Q 044412 215 EALDAFNKTKKSG--T--G-SDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE--KNLLCWNSITEALA 287 (311)
Q Consensus 215 ~a~~~~~~m~~~g--~--~-p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~--p~~~~~~~li~~~~ 287 (311)
+|...|++..+.. . . ....++..+-..+...|++++|...++. +..+...... ....+|..+...|.
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~ 354 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR------HLAIAQELGDRIGEARACWSLGNAHS 354 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 9999998876521 1 1 1145777888888888999988877643 3333333321 12457888999999
Q ss_pred hcCChHHHHHHHHHHHH
Q 044412 288 IHGFAHEALGMFDRMTY 304 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~ 304 (311)
..|++++|..++++..+
T Consensus 355 ~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 355 AIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 99999999999998754
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.69 E-value=6.7e-08 Score=78.27 Aligned_cols=184 Identities=9% Similarity=0.004 Sum_probs=130.4
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----cccCC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSSLR 101 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~~~ 101 (311)
.....+...|+...+...++...+.. +.+...+..+...+ .+.|++++|.+.|++..+ | +...+.. +...|
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLL-SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 34445566788888888888887743 34677888888999 999999999999988652 3 3333332 88899
Q ss_pred ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHH
Q 044412 102 HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAY 181 (311)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~ 181 (311)
++++|++.|++..+.. +.+...+..+...|.+.|++++ |...++...+.
T Consensus 106 ~~~~A~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~------------ 154 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG---------------MENGDLFYMLGTVLVKLEQPKL----ALPYLQRAVEL------------ 154 (243)
T ss_dssp CHHHHHHHHHHHHHHT---------------CCSHHHHHHHHHHHHHTSCHHH----HHHHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhccHHH----HHHHHHHHHHh------------
Confidence 9999999999987642 4567788999999999999999 55555442210
Q ss_pred HHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 182 ARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 182 ~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
...+...|..+...+...|++++|++.|++..+.. +.+..++..+..++...|+.++|...++.
T Consensus 155 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 155 -----------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred -----------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 12256678888899999999999999999988753 34577888999999999999977766543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.65 E-value=1.1e-07 Score=78.47 Aligned_cols=214 Identities=10% Similarity=-0.009 Sum_probs=135.7
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--C-Ceeeeec----ccc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--P-NVFVYHA----FSS 99 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~----~~~ 99 (311)
...+..++...|+...+...+....+.. +.+..++..+...+ .+.|++++|.+.|++..+ | +...+.. +.+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 4566777778899999999999888874 33678899999999 999999999999988753 3 2333333 889
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
.|++++|++.|++..+. .|+.......+..+...|++++|...........+
T Consensus 124 ~g~~~~A~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------ 175 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQD----------------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD------------ 175 (275)
T ss_dssp TTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC------------
T ss_pred hccHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------
Confidence 99999999999998763 45555555566666777999994443333333211
Q ss_pred HHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTG--S-DQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
++...|. +...+...++.++|++.+.+..+.... | +..++..+-..+...|++++|...
T Consensus 176 ---------------~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-- 237 (275)
T 1xnf_A 176 ---------------KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL-- 237 (275)
T ss_dssp ---------------CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred ---------------cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH--
Confidence 1222332 555556666777777777776543211 1 145666667777776766644443
Q ss_pred hhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044412 257 YCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMF 299 (311)
Q Consensus 257 ~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 299 (311)
|++..+-++..+.....++...|++++|..-+
T Consensus 238 -----------~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 -----------FKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -----------HHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred -----------HHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 33333222222334455666667777766554
No 42
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.65 E-value=1.9e-06 Score=66.15 Aligned_cols=154 Identities=14% Similarity=0.070 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCC---CCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE---RKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMI 204 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li 204 (311)
...|..+...+...|++++ |...++.... .+...+..+...+... |.+.+++.. ..+...|..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHH----HHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567778888999999999 8888887765 2455666666666554 666666543 23677888888
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~ 284 (311)
..+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.. .+. ...+...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~----~~~~~~~~~~la~ 152 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA------LGL----RPNEGKVHRAIAF 152 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----CTTCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH------Hhc----CccchHHHHHHHH
Confidence 89999999999999999987752 446778888888888888888776655332 111 1235678999999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 044412 285 ALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 285 ~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+...|++++|...+++..+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 43
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.64 E-value=5.1e-07 Score=74.46 Aligned_cols=189 Identities=10% Similarity=-0.027 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchh
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~ 137 (311)
...++..+-..+ ...|++++|...+ ++++++.++..... ......
T Consensus 42 ~~~~~~~l~~~~-~~~g~~~~A~~~~--------------------~~al~~~~~~~~~~--------------~~~~~~ 86 (283)
T 3edt_B 42 VATMLNILALVY-RDQNKYKEAAHLL--------------------NDALAIREKTLGKD--------------HPAVAA 86 (283)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHH--------------------HHHHHHHHHHTCTT--------------CHHHHH
T ss_pred HHHHHHHHHHHH-HHcccHHHHHHHH--------------------HHHHHHHHHHcCCc--------------chHHHH
Confidence 456677777777 7777777777766 44455554431110 122356
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCC---C-cHhHHHHHHHHHHhCCCh
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA---W-DIRSWTTMITSYSQNKQF 213 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~---~-~~~~y~~li~~~~~~g~~ 213 (311)
++..+-..|...|++++ |...+.+ +.+++++... | ...+|..+-..|...|++
T Consensus 87 ~~~~l~~~~~~~g~~~~----A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKE----AEPLCKR-------------------ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHHHHHHHTTTCHHH----HHHHHHH-------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHhccHHH----HHHHHHH-------------------HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 88889999999999999 5555554 2222222211 2 355678888888888999
Q ss_pred hHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCCh-------------------------
Q 044412 214 REALDAFNKTKKS------GTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSL------------------------- 261 (311)
Q Consensus 214 ~~a~~~~~~m~~~------g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~------------------------- 261 (311)
++|+++|++..+. +-.| ...++..+-..+...|++++|...++..-..
T Consensus 144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 9999988887764 1133 2456778888888889998888887662221
Q ss_pred -----------HHHHHHHhhcCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 262 -----------GRSLLVFFKLRE--K-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 262 -----------~~a~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..+...++.... | ...++..+...|...|++++|..++++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111122222221 1 235788899999999999999999998765
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.63 E-value=3.1e-07 Score=73.77 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=131.8
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC--CCCe-eeeec----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ--EPNV-FVYHA----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~--~~~~-~~~~~----~~~~ 100 (311)
..+...+...|+.+++...++..++.. +.++..+..+-..+ .+.|++++|...|++.. .|+. ..+.. +...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQ-LKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 456677788899999999999888764 23567788888888 99999999999998875 3442 23322 6667
Q ss_pred -----------CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 101 -----------RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 101 -----------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
|++++|+..|++..+. .| +...+..+-..|...|++++ |...+++..
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al- 145 (217)
T 2pl2_A 87 YRQAEDRERGKGYLEQALSVLKDAERV----------------NPRYAPLHLQRGLVYALLGERDK----AEASLKQAL- 145 (217)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHH-
T ss_pred hhhhhhhcccccCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcCChHH----HHHHHHHHH-
Confidence 9999999999988663 44 47788888899999999999 655555411
Q ss_pred CCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 169 RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 169 ~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
++ . .+...|..+-..|...|++++|+..|++..+.. +-+...+..+-..+...|+.
T Consensus 146 ------------------~~----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 146 ------------------AL----E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp ------------------HH----C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----
T ss_pred ------------------hc----c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence 11 1 467788889999999999999999999998752 33567888899999999999
Q ss_pred hhHHHHHH
Q 044412 249 DLGRGIQI 256 (311)
Q Consensus 249 ~~a~~~~~ 256 (311)
++|...++
T Consensus 202 ~~A~~~~~ 209 (217)
T 2pl2_A 202 EEAARAAA 209 (217)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 97776654
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.63 E-value=9.3e-07 Score=77.09 Aligned_cols=260 Identities=10% Similarity=0.030 Sum_probs=172.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcc---hhHHHHHHHHHhhccCChhHHHHhcccCCC-----CC----eeeee
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLD---CFLAKQFISFCTSRFHFIDYTILVFPQMQE-----PN----VFVYH 95 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~ 95 (311)
......+...|+...+...++...+.+.... ..++..+-..+ ...|+++.|...+++..+ .+ ...+.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3456667788999999999999888742211 35777888888 999999999999877531 11 11121
Q ss_pred c----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCC-------------------
Q 044412 96 A----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNK------------------- 151 (311)
Q Consensus 96 ~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~------------------- 151 (311)
. +...|++++|+..+++..+.. .+.+-.+ ...++..+-..|...|+
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDIS----------RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH----------HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH----------HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 1 788899999999998875421 1111111 14578888889999999
Q ss_pred -CccchHHHHHHhc---cCCCC--CHhHHHHHHHHHHHH-----HHHHHhhC-------CCC--cHhHHHHHHHHHHhCC
Q 044412 152 -FFESRRVSRRLFD---EMPER--KFATWNTMIDAYARL-----AELLFNKM-------PAW--DIRSWTTMITSYSQNK 211 (311)
Q Consensus 152 -~~~a~~~a~~~~~---~~~~~--~~~~~~~li~~~~~~-----a~~~~~~m-------~~~--~~~~y~~li~~~~~~g 211 (311)
+++|.....+... ....+ ...++..+-..|... |...+++. ..+ ...+|..+-..|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 8884444333222 22111 112455555555543 44444433 222 1347888889999999
Q ss_pred ChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHH
Q 044412 212 QFREALDAFNKTKKS----GTGSD-QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITE 284 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~ 284 (311)
++++|...+++..+. +-.+. ..++..+-..+...|++++|...++. +..+......+ ...++..+-.
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH------HHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999999987642 21111 55778888889999999988877643 33333333211 1457888899
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 044412 285 ALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 285 ~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|...|++++|...+++..+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988653
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.63 E-value=2.9e-07 Score=77.85 Aligned_cols=260 Identities=10% Similarity=0.028 Sum_probs=170.4
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcc---hhHHHHHHHHHhhccCChhHHHHhcccCCC-----CC----eeeeec
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLD---CFLAKQFISFCTSRFHFIDYTILVFPQMQE-----PN----VFVYHA 96 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~ 96 (311)
.....+...|+.+++...++...+...... ...+..+...+ ...|+++.|.+.+++..+ ++ ...+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 345566677899999999999888742211 36777888888 999999999999877542 11 111211
Q ss_pred ----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCC--------------------
Q 044412 97 ----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNK-------------------- 151 (311)
Q Consensus 97 ----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~-------------------- 151 (311)
+...|++++|++.+++..+.. .+.+-.+ ...++..+-..|...|+
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDIS----------RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHH----------HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 788899999999998875421 1111111 14478888889999999
Q ss_pred CccchHHHHHHhcc---CCCC--CHhHHHHHHHHHHHH-----HHHHHhhCC-------CC--cHhHHHHHHHHHHhCCC
Q 044412 152 FFESRRVSRRLFDE---MPER--KFATWNTMIDAYARL-----AELLFNKMP-------AW--DIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 152 ~~~a~~~a~~~~~~---~~~~--~~~~~~~li~~~~~~-----a~~~~~~m~-------~~--~~~~y~~li~~~~~~g~ 212 (311)
+++|.....+.... ...+ ....+..+-..+... |...+++.. .+ ...++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 88844333322221 1111 112445555555443 555554432 22 23378888888999999
Q ss_pred hhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHH
Q 044412 213 FREALDAFNKTKKS----GTGSD-QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEA 285 (311)
Q Consensus 213 ~~~a~~~~~~m~~~----g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~ 285 (311)
+++|...+++..+. +-.+. ..++..+-..+...|++++|...++. +..++.....+ ...++..+...
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999887642 11111 45777888888899999988877643 33333332211 24578889999
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 044412 286 LAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 286 ~~~~g~~~~a~~~~~~M~~~ 305 (311)
|...|++++|..++++..+.
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 99999999999999998753
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=2e-06 Score=71.18 Aligned_cols=213 Identities=10% Similarity=-0.007 Sum_probs=152.9
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhc----cCChhHHHHhcccCCCCC-eeeeec----cc
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR----FHFIDYTILVFPQMQEPN-VFVYHA----FS 98 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~a~~~~~~m~~~~-~~~~~~----~~ 98 (311)
..+...+...++.+.+...+....+. -+...+..+-..+ .+ .+++++|...|++..+.+ ...+.. +.
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLY-YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHH-HcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34556666778888888888888873 3556777777888 88 899999999998765433 222221 55
Q ss_pred c----CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCCccchHHHHHHhccCCCCC
Q 044412 99 S----LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY----SNKFFESRRVSRRLFDEMPERK 170 (311)
Q Consensus 99 ~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~a~~~~~~~~~~~ 170 (311)
. .+++++|++.|++..+.+ +...+..+-..|.. .|++++ |...++...+.
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~~~~~~~~~~~~~~----A~~~~~~a~~~- 143 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK-----------------YAEGCASLGGIYHDGKVVTRDFKK----AVEYFTKACDL- 143 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHCSSSCCCHHH----HHHHHHHHHHT-
T ss_pred CCCCcccCHHHHHHHHHHHHHcC-----------------CccHHHHHHHHHHcCCCcccCHHH----HHHHHHHHHhc-
Confidence 5 889999999998875532 56677778888888 888888 55555542211
Q ss_pred HhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc--
Q 044412 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH-- 244 (311)
Q Consensus 171 ~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~-- 244 (311)
.+...+..+-..|.. .+++++|+..|++..+.+ +...+..+-..|..
T Consensus 144 ------------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 144 ------------------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred ------------------------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 145566667777777 899999999999988764 45677777777877
Q ss_pred --cCChhhHHHHHHhhCChHHHHHHHhhcC-CCCchhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 044412 245 --LGALDLGRGIQIYCRSLGRSLLVFFKLR-EKNLLCWNSITEALAI----HGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 245 --~~~~~~a~~~~~~~~~~~~a~~~~~~~~-~p~~~~~~~li~~~~~----~g~~~~a~~~~~~M~~~g 306 (311)
.++.++|...++. .. ..+...+..+-..|.. .+++++|..+|++..+.|
T Consensus 197 ~~~~~~~~A~~~~~~-------------a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 197 GATKNFKEALARYSK-------------ACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCCHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHH-------------HHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7888866665533 22 1235667788888888 899999999999887654
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.62 E-value=4.9e-07 Score=69.56 Aligned_cols=154 Identities=11% Similarity=0.033 Sum_probs=116.8
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCCCC---eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcC
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQEPN---VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF 132 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~ 132 (311)
..+..+...+ ...|++++|...|+++.+.+ ...+.. +...|++++|.+.+++..+. .
T Consensus 9 ~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------~ 72 (186)
T 3as5_A 9 VYYRDKGISH-AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---------------A 72 (186)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------C
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------C
Confidence 4556667777 88999999999999886532 222222 77889999999999988654 2
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~ 212 (311)
+.+...+..+...|...|++++ |...++..... ...+...+..+...+...|+
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 73 PDNVKVATVLGLTYVQVQKYDL----AVPLLIKVAEA-----------------------NPINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhc-----------------------CcHhHHHHHHHHHHHHHcCc
Confidence 4467788888999999999999 55555442210 12356778888899999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+++|.+.+++..+.. +.+...+..+...+...|++++|...++.
T Consensus 126 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 126 FDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988763 44678889999999999999988777644
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.61 E-value=1.6e-06 Score=85.54 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=51.4
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChH------------
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG------------ 262 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~------------ 262 (311)
++...|..+-..|-..|++++|..+|... ..|..+..++.+.|+++.|.+.++..++.+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence 34444444445555555555555555552 245555555555555555555554422221
Q ss_pred ----HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 263 ----RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 263 ----~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.|...... ...+...+..++.-|.+.|.+++|..+++.-
T Consensus 1264 ~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred hHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111111 0234455667788888888888888888654
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.58 E-value=1.3e-06 Score=67.65 Aligned_cols=155 Identities=13% Similarity=0.080 Sum_probs=107.0
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHH
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITS 206 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~ 206 (311)
++.+|..+-..|.+.|++++|.....+.++.- +.+..+|..+-..|.+. |...+.... ..+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999444444443321 23445666666666554 444444432 2345566667777
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CC-CchhHHHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EK-NLLCWNSIT 283 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p-~~~~~~~li 283 (311)
+...++++.|...+.+..+.. +-+...+..+-..+.+.|++++|...+ ++.. .| +...|..+-
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~-------------~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAY-------------EKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH-------------HHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHH-------------HHHHHhcchhhhHHHHHH
Confidence 777888888888888776642 334566777777777777777665554 3332 33 567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 044412 284 EALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|.+.|++++|...|++..+
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.56 E-value=1.3e-06 Score=76.41 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=151.9
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCC-hhHHHHhcccCCC--C-Ceeeeec----cc
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQE--P-NVFVYHA----FS 98 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~-~~~a~~~~~~m~~--~-~~~~~~~----~~ 98 (311)
+..+..++...++..++...++..++..- -+...|+.+-.++ .+.|+ +++|...|++..+ | +...|+. +.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l-~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLL-KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34556667777888888888888887642 2456777777788 88886 8888888888753 3 3333333 67
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li 178 (311)
..|++++|+..|+...+.. +-+...|..+-.++.+.|++++ |...+++..+.+
T Consensus 178 ~~g~~~eAl~~~~kal~ld---------------P~~~~a~~~lg~~~~~~g~~~e----Al~~~~~al~l~-------- 230 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD---------------AKNYHAWQHRQWVIQEFKLWDN----ELQYVDQLLKED-------- 230 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCCTT----HHHHHHHHHHHC--------
T ss_pred HccCHHHHHHHHHHHHHhC---------------ccCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhC--------
Confidence 7788888888888876642 3457788888888888888888 555554432211
Q ss_pred HHHHHHHHHHHhhCCCCcHhHHHHHHHHHHh-CCChhHH-----HHHHHHHHhcCCCCC-HHHHHHHHHHHhccC--Chh
Q 044412 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQ-NKQFREA-----LDAFNKTKKSGTGSD-QVTMATVLSACAHLG--ALD 249 (311)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~--~~~ 249 (311)
..+...|+.+-..+.. .|..++| ++.|++..+. .|+ ...|..+-..+...| +.+
T Consensus 231 ---------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 231 ---------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCH
T ss_pred ---------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchH
Confidence 1357788888888888 6666888 4788887763 454 567888888888877 466
Q ss_pred hHHHHHHhhCChHHHHHHHhhc--CCCCchhHHHHHHHHHhcC---------ChHHHHHHHHHH
Q 044412 250 LGRGIQIYCRSLGRSLLVFFKL--REKNLLCWNSITEALAIHG---------FAHEALGMFDRM 302 (311)
Q Consensus 250 ~a~~~~~~~~~~~~a~~~~~~~--~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~M 302 (311)
+|... +.++ ...+...+..+...|.+.| ..++|..+|+++
T Consensus 294 ~a~~~-------------~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 294 NLLNQ-------------LLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHH-------------HHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHH-------------HHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55443 3332 2345677888999998874 258999999998
No 52
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.55 E-value=9.4e-07 Score=63.96 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHH
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREAL 217 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~ 217 (311)
.|..+...|...|++++ |..+++.+... ...+...|..+...+...|++++|.
T Consensus 3 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~~~~~~~~A~ 55 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDE----AIEYYQKALEL-----------------------DPRSAEAWYNLGNAYYKQGDYDEAI 55 (136)
T ss_dssp HHHHHHHHHHHHTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCcHHH----HHHHHHHHHHc-----------------------CCcchhHHHHHHHHHHHhcCHHHHH
Confidence 56778888999999999 55555542210 1235667888889999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 044412 218 DAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297 (311)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 297 (311)
.+|+++.+.+ +.+...+..+...+...|++++|...++..-. . ...+...+..+...+...|++++|..
T Consensus 56 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~----~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 56 EYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------L----DPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------H----CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHH------h----CCCChHHHHHHHHHHHHHccHHHHHH
Confidence 9999998754 44577888888999999999877666533211 1 12356788999999999999999999
Q ss_pred HHHHHHHc
Q 044412 298 MFDRMTYE 305 (311)
Q Consensus 298 ~~~~M~~~ 305 (311)
.++++...
T Consensus 125 ~~~~~~~~ 132 (136)
T 2fo7_A 125 YYQKALEL 132 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 99998864
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.9e-06 Score=70.15 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=101.5
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|++.|++..+. . .+...|..+..+|...|++++ |...++...+
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~---------------~-~~~~~~~~~~~~~~~~~~~~~----A~~~~~~a~~-------- 66 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWEL---------------H-KDITYLNNRAAAEYEKGEYET----AISTLNDAVE-------- 66 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------S-CCTHHHHHHHHHHHHTTCHHH----HHHHHHHHHH--------
T ss_pred HHHhccHHHHHHHHHHHHHh---------------h-ccHHHHHHHHHHHHHcccHHH----HHHHHHHHHH--------
Confidence 45678888888888887543 2 677889999999999999999 5555544221
Q ss_pred HHHHHHHHHHHHHhhCCCC---cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC------------------------CC
Q 044412 177 MIDAYARLAELLFNKMPAW---DIRSWTTMITSYSQNKQFREALDAFNKTKKSG------------------------TG 229 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~ 229 (311)
+....... ...+|..+...+...|++++|++.|++..+.. ..
T Consensus 67 -----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 135 (258)
T 3uq3_A 67 -----------QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135 (258)
T ss_dssp -----------HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -----------hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC
Confidence 11000000 03445555555555566666666555555421 12
Q ss_pred C-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 230 S-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 230 p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
| +...+..+...+...|++++|... |++.. ..+...|..+...|...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~-------------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKA-------------YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHH-------------HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 234556666666666666655544 44333 345778999999999999999999999998764
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.53 E-value=1.8e-06 Score=72.34 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=105.3
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhC--C--CCcHhHHHHHHHHHHhC
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM--P--AWDIRSWTTMITSYSQN 210 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m--~--~~~~~~y~~li~~~~~~ 210 (311)
...++..+-..|...|++++ |...++. +.+++... . .....+|..+...|...
T Consensus 68 ~~~~~~~la~~~~~~g~~~~----A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKD----AANLLND-------------------ALAIREKTLGKDHPAVAATLNNLAVLYGKR 124 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHH----HHHHHHH-------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Confidence 45678888999999999999 6555554 22223222 1 12456788899999999
Q ss_pred CChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC----CchhH
Q 044412 211 KQFREALDAFNKTKKS------GTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK----NLLCW 279 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p----~~~~~ 279 (311)
|++++|.+.|++..+. +-.| ....+..+-..+...|++++|..+++ .+.+++++...+ ...++
T Consensus 125 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~------~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ------RALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH------HHHHHHHHTSCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999998764 3333 34568888899999999999988764 445555554322 24578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 280 NSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 280 ~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..+...|...|++++|..++++..+
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999875
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.53 E-value=5.2e-06 Score=72.36 Aligned_cols=228 Identities=7% Similarity=-0.101 Sum_probs=140.3
Q ss_pred HHhhccChhhHHHHHHHHHHh----ccCc-chhHHHHHHHHHhhccCChhHHHHhcccCCC-----CC-----eeeeec-
Q 044412 33 QLKKCSSIKELECVYATIVKT----NANL-DCFLAKQFISFCTSRFHFIDYTILVFPQMQE-----PN-----VFVYHA- 96 (311)
Q Consensus 33 ~l~~~~~~~~~~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----~~-----~~~~~~- 96 (311)
.+...|+...+...+....+. +-.+ ...++..+-..+ ...|+++.|...+++..+ ++ ..+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY-YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344557777777777776654 1111 234666677777 778888877777655431 11 011111
Q ss_pred ---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 97 ---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 97 ---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+...|++++|++.|++..+.. .+.+-.+. ..++..+-.+|...|++++ |...+++
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~~~lg~~y~~~g~~~~----A~~~~~~------- 249 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMA----------EAEKQPQLMGRTLYNIGLCKNSQSQYED----AIPYFKR------- 249 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHH-------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHH----------HHcCChHHHHHHHHHHHHHHHHCCCHHH----HHHHHHH-------
Confidence 666677777777776654310 11111111 2366666666777777777 7776666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC-Cc-HhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHhccC
Q 044412 173 TWNTMIDAYARLAELLFNKMPA-WD-IRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~m~~-~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~a~~~~~ 246 (311)
|.+++..... |+ ..++..+-..|...|++++|...+++..+. +-+.....+..+-..+...|
T Consensus 250 ------------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 250 ------------AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp ------------HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred ------------HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 7777777665 53 456888888888899999999988886542 11222233566667777777
Q ss_pred ChhhHHHHHHhhCChHHHHHHHhhcCC-C-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 247 ALDLGRGIQIYCRSLGRSLLVFFKLRE-K-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 247 ~~~~a~~~~~~~~~~~~a~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+.+. ...|..++++... | ....+..+-..|...|++++|...+++..+
T Consensus 318 ~~~~----------~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEA----------IQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHH----------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7211 2244445544431 1 234678889999999999999999998764
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.50 E-value=1e-05 Score=68.44 Aligned_cols=186 Identities=9% Similarity=0.012 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHH-------hCCCC-------ccchHHHHHHhccCCCC
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS-------YSNKF-------FESRRVSRRLFDEMPER 169 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~a~~~~~~~~~~ 169 (311)
++|..+|++.... .+-+...|..+...+. +.|++ ++|..+..+........
T Consensus 33 ~~a~~~~~~al~~---------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLV---------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 97 (308)
T ss_dssp HHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc
Confidence 5666677666542 1334445555555543 24555 55333333333322222
Q ss_pred CHhHHHHHHHHHHHH-----HHHHHhhCCC--Cc-Hh-HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044412 170 KFATWNTMIDAYARL-----AELLFNKMPA--WD-IR-SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLS 240 (311)
Q Consensus 170 ~~~~~~~li~~~~~~-----a~~~~~~m~~--~~-~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 240 (311)
+...|..+...+.+. |..+|++..+ |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 334555555554433 5555554432 32 22 56666666666666666666666665532 122333332222
Q ss_pred HH-hccCChhhHHHHHHh---------------------hCChHHHHHHHhhcCC-----C--CchhHHHHHHHHHhcCC
Q 044412 241 AC-AHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLRE-----K--NLLCWNSITEALAIHGF 291 (311)
Q Consensus 241 a~-~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~~-----p--~~~~~~~li~~~~~~g~ 291 (311)
.. ...|+.+.|..+|+. .|+.++|..+|++..+ | ....|..++..+.+.|+
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 21 124666666666655 4566666666665542 2 34578888888889999
Q ss_pred hHHHHHHHHHHHHc
Q 044412 292 AHEALGMFDRMTYE 305 (311)
Q Consensus 292 ~~~a~~~~~~M~~~ 305 (311)
.++|..+++++.+.
T Consensus 257 ~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888753
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.47 E-value=8e-06 Score=80.73 Aligned_cols=226 Identities=9% Similarity=0.000 Sum_probs=129.7
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC----CCeeeeec--cccCC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE----PNVFVYHA--FSSLR 101 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~--~~~~~ 101 (311)
..+...+...|+++++...|... -|...|..++.+| .+.|++++|.+.+....+ +.+.++-. |++.+
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~-~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 45566666666666665555331 4566666677777 777777777777644221 11222211 44444
Q ss_pred Chh----------------------------HHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCc
Q 044412 102 HPL----------------------------QAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF 153 (311)
Q Consensus 102 ~~~----------------------------~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 153 (311)
+++ +|..+|.. ...|..+..+|++.|+++
T Consensus 1182 rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k-----------------------A~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1182 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-----------------------VSNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-----------------------hhHHHHHHHHHHHhCCHH
Confidence 444 33333332 237888888888888888
Q ss_pred cchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 044412 154 ESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGT 228 (311)
Q Consensus 154 ~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 228 (311)
+|.+.+++. .+..+|..+-.+|... |......+ .-+...+..++.-|-+.|.+++|+++++.-.. +
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--L 1309 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAALG--L 1309 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--c
Confidence 844444333 3445666655555432 43333322 22445566888889999999999999966553 3
Q ss_pred CCC-HHHHHHHHHHHh--ccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 044412 229 GSD-QVTMATVLSACA--HLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALG 297 (311)
Q Consensus 229 ~p~-~~t~~~li~a~~--~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 297 (311)
.|. ...|+-|-.+++ +-+++.++.++|...++.....+. .-+...|.-++--|.+.|+++.|..
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~-----~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA-----AEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHH-----HHHHHHHHHHHHHHHhcccHHHHHH
Confidence 332 234443444444 444555444444332222211100 1356789999999999999999874
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.47 E-value=7e-06 Score=67.48 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=111.7
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCH--hHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKF--ATW 174 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~--~~~ 174 (311)
+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.....+.++....++. ..|
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~---------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK---------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT---------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 567889999999999987642 334558888889999999999966666666652222222 234
Q ss_pred HHHHHHHHHH-----HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 044412 175 NTMIDAYARL-----AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 175 ~~li~~~~~~-----a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~ 246 (311)
..+-..+... |.+.|++.. ..+..+|..+-..|...|++++|+..|++..+. -+-+...|..+-..+...+
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence 5555555443 555555443 224567777777777788888888877777654 1223444544441333334
Q ss_pred ChhhHHHHHHhhCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCC---hHHHHHHHHHHHH
Q 044412 247 ALDLGRGIQIYCRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIHGF---AHEALGMFDRMTY 304 (311)
Q Consensus 247 ~~~~a~~~~~~~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~---~~~a~~~~~~M~~ 304 (311)
++++|...+ ++.. .| +...+..+...+...|+ +++|...+++..+
T Consensus 157 ~~~~A~~~~-------------~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 157 EYVKADSSF-------------VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp CHHHHHHHH-------------HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHH-------------HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 666554443 3322 23 35666777777777777 6667777776553
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.45 E-value=2.7e-07 Score=83.35 Aligned_cols=189 Identities=10% Similarity=-0.031 Sum_probs=140.4
Q ss_pred cchhHHHHHHHHHhhccCCh-hHHHHhcccCC--CCC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHH
Q 044412 57 LDCFLAKQFISFCTSRFHFI-DYTILVFPQMQ--EPN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128 (311)
Q Consensus 57 p~~~~~~~ll~~~~~~~g~~-~~a~~~~~~m~--~~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 128 (311)
.+...+..+-..+ ...|++ ++|.+.|++.. .|+ ...|.. +...|++++|++.|++..+
T Consensus 100 ~~a~~~~~lg~~~-~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------- 165 (474)
T 4abn_A 100 VEAQALMLKGKAL-NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT------------- 165 (474)
T ss_dssp CCHHHHHHHHHHH-TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-------------
T ss_pred hhHHHHHHHHHHH-HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------
Confidence 3667788888888 999999 99999998875 233 333433 8889999999999999876
Q ss_pred HhcCCCchhHHHHHHHHHHhC---------CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhH
Q 044412 129 KNGFSSPVFVQTAMVDNYSYS---------NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRS 199 (311)
Q Consensus 129 ~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~ 199 (311)
..|+...+..+-..|... |++++|.....+.++.- ..+...
T Consensus 166 ---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------------p~~~~~ 215 (474)
T 4abn_A 166 ---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---------------------------VLDGRS 215 (474)
T ss_dssp ---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---------------------------TTCHHH
T ss_pred ---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---------------------------CCCHHH
Confidence 467788899999999999 99999444333333321 124667
Q ss_pred HHHHHHHHHhC--------CChhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHH
Q 044412 200 WTTMITSYSQN--------KQFREALDAFNKTKKSGTGS----DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLV 267 (311)
Q Consensus 200 y~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p----~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~ 267 (311)
|..+-..|... |++++|++.|++..+. .| +...|..+-.+|...|++++|...++. |.++
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~------al~l 287 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQ------AAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh
Confidence 77788888877 8899999999998874 35 778888888999998988877665533 2221
Q ss_pred HhhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 268 FFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 268 ~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.| +...+..+-..+...|++++|...+.++
T Consensus 288 -----~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 288 -----DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23 4557888888888888888888765443
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=4.9e-06 Score=68.82 Aligned_cols=187 Identities=10% Similarity=-0.044 Sum_probs=136.7
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCCCCee-eeec----ccc----CCChhHHHHHHHHHHHCCCCchHHHHHHH
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVF-VYHA----FSS----LRHPLQAIAFYLYMLRAEVLLTTVHGQVW 128 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~----~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 128 (311)
++.++..+-..+ .+.|++++|...|++..+++.. .+.. +.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKS-YKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 72 (273)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred ChHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----------
Confidence 455666777778 8889999999999876654422 2211 556 889999999998876532
Q ss_pred HhcCCCchhHHHHHHHHHHh----CCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHH
Q 044412 129 KNGFSSPVFVQTAMVDNYSY----SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMI 204 (311)
Q Consensus 129 ~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li 204 (311)
+...+..+-..|.. .|++++ |...++...+. .+...+..+-
T Consensus 73 ------~~~a~~~lg~~~~~g~~~~~~~~~----A~~~~~~a~~~-------------------------~~~~a~~~lg 117 (273)
T 1ouv_A 73 ------YSNGCHLLGNLYYSGQGVSQNTNK----ALQYYSKACDL-------------------------KYAEGCASLG 117 (273)
T ss_dssp ------CHHHHHHHHHHHHHTSSSCCCHHH----HHHHHHHHHHT-------------------------TCHHHHHHHH
T ss_pred ------CHHHHHHHHHHHhCCCCcccCHHH----HHHHHHHHHHc-------------------------CCccHHHHHH
Confidence 56677778888888 899999 66555542211 2566777888
Q ss_pred HHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHhhCChHHHHHHHhhcCCCCc
Q 044412 205 TSYSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH----LGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276 (311)
Q Consensus 205 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~----~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~ 276 (311)
..|.. .+++++|+..|++..+.+ +...+..+-..|.. .++.++|...++.. .+ ..+.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a------~~------~~~~ 182 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKA------CD------LKDS 182 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------HH------TTCH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------HH------CCCH
Confidence 88888 999999999999998876 56667777777776 77888666655331 11 2355
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 044412 277 LCWNSITEALAI----HGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 277 ~~~~~li~~~~~----~g~~~~a~~~~~~M~~~g 306 (311)
..+..+-..|.. .+++++|..+|++..+.+
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 678888888989 999999999999887654
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.44 E-value=3.1e-06 Score=71.65 Aligned_cols=173 Identities=10% Similarity=0.001 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCee--eeec----cccCCChhHHHHHHHH
Q 044412 41 KELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVF--VYHA----FSSLRHPLQAIAFYLY 112 (311)
Q Consensus 41 ~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~--~~~~----~~~~~~~~~a~~~~~~ 112 (311)
+++..+++..++.--+-+...|..+...+ .+.|++++|.++|++..+ |+.. .|.. +.+.|+.++|.++|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56666666666532222445777777777 777777777777766543 2211 2333 4556677777777776
Q ss_pred HHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHH-HhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhh
Q 044412 113 MLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNY-SYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNK 191 (311)
Q Consensus 113 m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~ 191 (311)
..+.. +.+...|....... ...|+.++ |..+|+...+ .+
T Consensus 160 a~~~~---------------p~~~~~~~~~a~~~~~~~~~~~~----A~~~~~~al~-------------------~~-- 199 (308)
T 2ond_A 160 AREDA---------------RTRHHVYVTAALMEYYCSKDKSV----AFKIFELGLK-------------------KY-- 199 (308)
T ss_dssp HHTST---------------TCCTHHHHHHHHHHHHTSCCHHH----HHHHHHHHHH-------------------HH--
T ss_pred HHhcC---------------CCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH-------------------hC--
Confidence 65431 22333443332221 12567777 5555544221 10
Q ss_pred CCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHhccCChhhHHHHHH
Q 044412 192 MPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSD--QVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 192 m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
..+...|..++..+.+.|++++|..+|++..+.. +.|+ ...|..++....+.|+.+.|..+++
T Consensus 200 --p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 200 --GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp --TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1257788999999999999999999999999863 5663 5678888888888899987776653
No 62
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=6.5e-05 Score=67.00 Aligned_cols=196 Identities=5% Similarity=-0.069 Sum_probs=125.1
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHh-----cc--Cc-chhHHHHHHHHHhhccCChhHHHHhcccCCC-------C--
Q 044412 27 IHIIANQLKKCSSIKELECVYATIVKT-----NA--NL-DCFLAKQFISFCTSRFHFIDYTILVFPQMQE-------P-- 89 (311)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~l~~~m~~~-----g~--~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-------~-- 89 (311)
++.+..+....|+.+++.+.+....+. +. .| ...+|+.+-..| ...|++++|...+++..+ +
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y-~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY-YHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 456777888889999997777665432 11 22 346788999999 999999999988876531 1
Q ss_pred -C-eeeeec------cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHH---HHhCCCCccchH
Q 044412 90 -N-VFVYHA------FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDN---YSYSNKFFESRR 157 (311)
Q Consensus 90 -~-~~~~~~------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~---~~~~g~~~~a~~ 157 (311)
+ ..++.. ....+++++|++.|++..+. .|+ +..+..+..+ +...|+.++|.+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------KPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 1 111111 22346789999999987653 444 4444444444 455677788554
Q ss_pred HHHHHhccCCCCCHhHHHHHHHHHHHH---------HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 158 VSRRLFDEMPERKFATWNTMIDAYARL---------AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 158 ~a~~~~~~~~~~~~~~~~~li~~~~~~---------a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
...+.++. ...+...+..+-..+... |.+.+++.. ..+..+++.+-..|...|++++|+..|.+..+
T Consensus 197 ~~~~al~l-~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 197 PLRQAIRL-NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHH-CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhc-CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 44444332 223444555444444331 666665443 34667888999999999999999999999887
Q ss_pred cCCCCC-HHHHHHHHHHH
Q 044412 226 SGTGSD-QVTMATVLSAC 242 (311)
Q Consensus 226 ~g~~p~-~~t~~~li~a~ 242 (311)
. .|+ ..++..+-.+|
T Consensus 276 ~--~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 276 Y--IPNNAYLHCQIGCCY 291 (472)
T ss_dssp H--STTCHHHHHHHHHHH
T ss_pred h--CCChHHHHHHHHHHH
Confidence 4 454 44555554444
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.41 E-value=1e-06 Score=68.27 Aligned_cols=156 Identities=10% Similarity=-0.020 Sum_probs=93.5
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHh
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKN 130 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 130 (311)
++.+|..+=..+ .+.|++++|.+.|++..+ |+ ...+.. +.+.|++++|+..++.....
T Consensus 4 ~~~iy~~lG~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKK-RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------------- 68 (184)
T ss_dssp CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 345566666666 666666666666655431 22 112211 55566666666666665443
Q ss_pred cCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhC
Q 044412 131 GFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 131 g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~ 210 (311)
.+-+...+..+-..+...++++. +...+..... ....+...+..+-..|...
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~a~~-----------------------~~~~~~~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 69 -DTTSAEAYYILGSANFMIDEKQA----AIDALQRAIA-----------------------LNTVYADAYYKLGLVYDSM 120 (184)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH-----------------------HCTTCHHHHHHHHHHHHHT
T ss_pred -CchhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH-----------------------hCccchHHHHHHHHHHHHh
Confidence 13334555555666666777777 4433332111 1122566777777888888
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|++++|++.|++..+.. +-+..+|..+-.++.+.|++++|...|+.
T Consensus 121 g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888877642 33566778888888888888877666644
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.40 E-value=4.5e-05 Score=69.57 Aligned_cols=108 Identities=7% Similarity=0.012 Sum_probs=88.8
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChhhHHHHHHh----------------
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ--VTMATVLSACAHLGALDLGRGIQIY---------------- 257 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~a~~~~~~~~~a~~~~~~---------------- 257 (311)
+...|..+...+.+.|++++|..+|++..+ +.|+. ..|......+.+.|+++.|+.+|+.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 567888899999999999999999999987 45653 4788888888888889998888876
Q ss_pred ------hCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 258 ------CRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 258 ------~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.|+.+.|..+|++.. .| +...|..++..+.+.|+.++|..+|++....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 467778888888665 34 5678899999999999999999999998775
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.40 E-value=5.7e-06 Score=68.06 Aligned_cols=164 Identities=8% Similarity=0.025 Sum_probs=107.4
Q ss_pred hhHHHHHhhhhhcCCCCCchh-hhHHHHHHHHhhccChhhHHHHHHHHHHh------ccCc-chhHHHHHHHHHhhccCC
Q 044412 4 KYVRAIITSFKKNSFPTSVSF-IRIHIIANQLKKCSSIKELECVYATIVKT------NANL-DCFLAKQFISFCTSRFHF 75 (311)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~~m~~~------g~~p-~~~~~~~ll~~~~~~~g~ 75 (311)
..+...+..+.+...++.+.. .....+..++...|+...+...+....+. +-.| ...++..+-..+ ...|+
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 100 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY-GKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH-HTTTC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHhcc
Confidence 345555555555444443332 23456777778889999998888877765 2223 346777788888 88888
Q ss_pred hhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccc
Q 044412 76 IDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155 (311)
Q Consensus 76 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 155 (311)
+++|.+.| ++|++++++..... .+....++..+-..|...|++++
T Consensus 101 ~~~A~~~~--------------------~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~- 145 (283)
T 3edt_B 101 YKEAEPLC--------------------KRALEIREKVLGKF--------------HPDVAKQLNNLALLCQNQGKAEE- 145 (283)
T ss_dssp HHHHHHHH--------------------HHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHTTTCHHH-
T ss_pred HHHHHHHH--------------------HHHHHHHHHHcCCC--------------ChHHHHHHHHHHHHHHHcCCHHH-
Confidence 88887776 55555555542211 12236678889999999999999
Q ss_pred hHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCC---CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 156 RRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP---AW-DIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 156 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~---~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
|...+++ +.+++.... .| ...++..+-..|...|++++|..+|++..+
T Consensus 146 ---A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 146 ---VEYYYRR-------------------ALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp ---HHHHHHH-------------------HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHH-------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555554 222222221 11 355788888888899999999999988765
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.37 E-value=1.8e-06 Score=75.62 Aligned_cols=191 Identities=12% Similarity=0.075 Sum_probs=140.1
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCC-hhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRH-PLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
..|+.+-..+ .+.|++++|.+.+++..+ |+ ...|+. +...|+ +++|+..|++..+..
T Consensus 98 ~a~~~lg~~~-~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVL-QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHH-HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHH-HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 5667777778 889999999999988753 43 333433 777786 999999999987642
Q ss_pred CCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCC
Q 044412 132 FSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211 (311)
Q Consensus 132 ~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g 211 (311)
+-+...|+.+-.+|.+.|++++ |...++..... ...+...|..+-..+...|
T Consensus 163 -P~~~~a~~~~g~~~~~~g~~~e----Al~~~~kal~l-----------------------dP~~~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 163 -PKNYQVWHHRRVLVEWLRDPSQ----ELEFIADILNQ-----------------------DAKNYHAWQHRQWVIQEFK 214 (382)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCTT----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHh-----------------------CccCHHHHHHHHHHHHHcC
Confidence 3457889999999999999999 55555543221 1236788999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc-cCChhhHHHHHHhhCChHHHHHHHhhcC--CC-CchhHHHHHHHHH
Q 044412 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAH-LGALDLGRGIQIYCRSLGRSLLVFFKLR--EK-NLLCWNSITEALA 287 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~-~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~ 287 (311)
++++|+..|++..+.. +-+...|+.+-.++.+ .|..++|.. +.+...|++.. .| +...|+.+-..+.
T Consensus 215 ~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~--------~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 215 LWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL--------EREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH--------HHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999999853 2256788888888888 666566531 11223333322 34 4678888888888
Q ss_pred hcC--ChHHHHHHHHHH
Q 044412 288 IHG--FAHEALGMFDRM 302 (311)
Q Consensus 288 ~~g--~~~~a~~~~~~M 302 (311)
..| ++++|.+.+.++
T Consensus 286 ~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCGGGCHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHh
Confidence 888 689999988887
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.36 E-value=4.9e-06 Score=75.02 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCC-ccchHHHHHHhccCCCCCHhHHHHHHHHH
Q 044412 103 PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKF-FESRRVSRRLFDEMPERKFATWNTMIDAY 181 (311)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~a~~~~~~~~~~~~~~~~~li~~~ 181 (311)
.+++++.+++.... .+.+...+..+-.+|...|++ ++|+....+.++.- ..+...|..+-..|
T Consensus 84 ~~~al~~l~~~~~~---------------~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 147 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---------------AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVY 147 (474)
T ss_dssp HHHHHHHHHHHHTT---------------CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---------------CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 56666666665443 234678888888999999999 99444444433321 12344566665555
Q ss_pred HHH-----HHHHHhhCC--CCcHhHHHHHHHHHHhC---------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 044412 182 ARL-----AELLFNKMP--AWDIRSWTTMITSYSQN---------KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 182 ~~~-----a~~~~~~m~--~~~~~~y~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 245 (311)
.+. |.+.|++.. .|+...|..+-..|... |++++|++.|++..+.. +-+...|..+-.+|...
T Consensus 148 ~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 554 555555443 35556666666777777 77777777777766542 22355666666666665
Q ss_pred --------CChhhHHHHHHhhCChHHHHHHHhhcC--CC----CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 246 --------GALDLGRGIQIYCRSLGRSLLVFFKLR--EK----NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 246 --------~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p----~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
|++++|. ..|++.. .| +...|..+-..|...|++++|...|++..+
T Consensus 227 ~~~~~~~~g~~~~A~-------------~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 227 YFNTGQNPKISQQAL-------------SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHTTCCHHHHHHHH-------------HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhccccchHHHHH-------------HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5565554 4444433 34 678899999999999999999999999875
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.30 E-value=3.6e-05 Score=66.94 Aligned_cols=107 Identities=8% Similarity=-0.049 Sum_probs=70.8
Q ss_pred HHHHHhhCCCCc-HhHHHHHHHHHHhCCChhHHHHHHHHHHhcC----CCCCHHHHHHHHHHHhccCC---hhhHHHHHH
Q 044412 185 AELLFNKMPAWD-IRSWTTMITSYSQNKQFREALDAFNKTKKSG----TGSDQVTMATVLSACAHLGA---LDLGRGIQI 256 (311)
Q Consensus 185 a~~~~~~m~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~li~a~~~~~~---~~~a~~~~~ 256 (311)
+.++++....|+ ..++..+-..|.+.|++++|...+++..+.. -+.....+..+-..+...++ ++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~------- 320 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH------- 320 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH-------
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH-------
Confidence 555555544443 4567778888888899999999988876632 12223345555556666666 44
Q ss_pred hhCChHHHHHHHhhcCC-C-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 257 YCRSLGRSLLVFFKLRE-K-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 257 ~~~~~~~a~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+|...+++... | ....+..+-..|...|++++|...|++..+
T Consensus 321 ------~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 321 ------DLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444331 1 224567888999999999999999988754
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.29 E-value=4.6e-06 Score=70.30 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=144.3
Q ss_pred HHHHHHHhhccCChhHHHHhcccCCC--CCe-----eeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 63 KQFISFCTSRFHFIDYTILVFPQMQE--PNV-----FVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 63 ~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~-----~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
...-..+ .+.|++++|...|++..+ |+. ..+.. +...|++++|++.+++..+. ....+
T Consensus 9 ~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~ 77 (338)
T 3ro2_A 9 ALEGERL-CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------ARTIG 77 (338)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHT
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------hhccc
Confidence 3344566 889999999999988753 332 12222 78899999999999887542 11122
Q ss_pred CCC-chhHHHHHHHHHHhCCCCccchHHHHHHhccCCC-CC----HhHHHHHHHHHH---H-------------------
Q 044412 132 FSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RK----FATWNTMIDAYA---R------------------- 183 (311)
Q Consensus 132 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-~~----~~~~~~li~~~~---~------------------- 183 (311)
..| ...++..+-..|...|++++|.....+.++..+. ++ ..++..+-..|. +
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 222 2567888888999999999955554443332221 11 113333333322 1
Q ss_pred -H--HH-------HHHhhCCCC--cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccC
Q 044412 184 -L--AE-------LLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGS-DQVTMATVLSACAHLG 246 (311)
Q Consensus 184 -~--a~-------~~~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~ 246 (311)
. |. .+......+ ...++..+...+...|++++|.+.+++..+. +-.+ ...++..+...+...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 1 33 333333322 2346888888899999999999999987652 1111 1337788888889999
Q ss_pred ChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 247 ALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 247 ~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
++++|...++. +..+......+ ...++..+-..+...|++++|..++++..+
T Consensus 238 ~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 238 EFETASEYYKK------TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp CHHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH------HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99988877643 33333333211 145788889999999999999999988754
No 70
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.28 E-value=4.8e-06 Score=60.07 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=89.1
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|+++|+++.+.. +.+...+..+...+...|++++ |...++.....
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~------- 64 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD---------------PRSAEAWYNLGNAYYKQGDYDE----AIEYYQKALEL------- 64 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH-------
T ss_pred HHHcCcHHHHHHHHHHHHHcC---------------CcchhHHHHHHHHHHHhcCHHH----HHHHHHHHHHH-------
Confidence 445678888888888876532 3467788889999999999999 65555542210
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
...+...|..+...+...|++++|.++++++.+.. +.+..++..+...+...|+++.|...+.
T Consensus 65 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 ----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12356678888899999999999999999998753 3457788889999999999997776654
No 71
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.28 E-value=0.00012 Score=65.99 Aligned_cols=76 Identities=8% Similarity=-0.085 Sum_probs=38.6
Q ss_pred ccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhc----cCChhHHHHhcccCCCCCe-eeeec----ccc----CCCh
Q 044412 37 CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR----FHFIDYTILVFPQMQEPNV-FVYHA----FSS----LRHP 103 (311)
Q Consensus 37 ~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~a~~~~~~m~~~~~-~~~~~----~~~----~~~~ 103 (311)
.++...+...+....+.| ++..+..|-..| .. .++.++|..+|++..+++. ..+.. |.. .++.
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y-~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMY-HEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 445555555555555544 444445555555 44 5566666666665443321 11111 222 4566
Q ss_pred hHHHHHHHHHHHC
Q 044412 104 LQAIAFYLYMLRA 116 (311)
Q Consensus 104 ~~a~~~~~~m~~~ 116 (311)
++|++.|+...+.
T Consensus 168 ~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 168 VMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6666666665443
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.27 E-value=3.4e-05 Score=68.83 Aligned_cols=249 Identities=8% Similarity=-0.060 Sum_probs=143.4
Q ss_pred cChhhHHHHHHHHHHhccCcc-hhHHHHHHHH---HhhccCChhHHHHhcccCC--CCC-eeeeec--------cccCCC
Q 044412 38 SSIKELECVYATIVKTNANLD-CFLAKQFISF---CTSRFHFIDYTILVFPQMQ--EPN-VFVYHA--------FSSLRH 102 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~-~~~~~~ll~~---~~~~~g~~~~a~~~~~~m~--~~~-~~~~~~--------~~~~~~ 102 (311)
++.+.+...|+...+.. |+ +..+..+..+ + ...++.++|.+.+++.. .|+ ...+.. ....++
T Consensus 152 ~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l-~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRL-DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH-HHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 35678888888877764 43 3344433333 3 55677788887776543 232 222221 345578
Q ss_pred hhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHH
Q 044412 103 PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYA 182 (311)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~ 182 (311)
.++|.+.+++.... .+.+..++..+-..|.+.|++++|.....+..+.-+ .+..++..+-..|.
T Consensus 229 ~~~a~~~~~~al~~---------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 229 EGEGEKLVEEALEK---------------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYR 292 (472)
T ss_dssp -CHHHHHHHHHHHH---------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence 88999999887653 245577889999999999999995554444444322 23344444433332
Q ss_pred HH------------------------HHHHHhhCC---CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH--
Q 044412 183 RL------------------------AELLFNKMP---AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV-- 233 (311)
Q Consensus 183 ~~------------------------a~~~~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-- 233 (311)
.. |...|+... ..+..+|..+-..|...|++++|++.|++..+....|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 21 444444332 2355678889999999999999999999988754433321
Q ss_pred HHHHHHH-HHhccCChhhHHHHHHhh-----------CChHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChHHHHHH
Q 044412 234 TMATVLS-ACAHLGALDLGRGIQIYC-----------RSLGRSLLVFFKLR---EKNLLCWNSITEALAIHGFAHEALGM 298 (311)
Q Consensus 234 t~~~li~-a~~~~~~~~~a~~~~~~~-----------~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~ 298 (311)
.+..+-. .....|+.++|...+... +....+.+++++.. ..+..+|+.+-..|...|++++|.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1222211 234678899998887761 11122233333322 34678999999999999999999999
Q ss_pred HHHHHHc
Q 044412 299 FDRMTYE 305 (311)
Q Consensus 299 ~~~M~~~ 305 (311)
|++..+.
T Consensus 453 y~kALe~ 459 (472)
T 4g1t_A 453 SERGLES 459 (472)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 9998764
No 73
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.27 E-value=0.00013 Score=65.78 Aligned_cols=250 Identities=12% Similarity=0.047 Sum_probs=154.0
Q ss_pred HHHHHHhh----ccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhc----cCChhHHHHhcccCCCCC-eeeeec---
Q 044412 29 IIANQLKK----CSSIKELECVYATIVKTNANLDCFLAKQFISFCTSR----FHFIDYTILVFPQMQEPN-VFVYHA--- 96 (311)
Q Consensus 29 ~~~~~l~~----~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~a~~~~~~m~~~~-~~~~~~--- 96 (311)
.+..++.. .++...+...++...+.| ++..+..|-..| .. .++.++|.++|++..+.+ ...+..
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y-~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAY-FEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444 457777788888887776 556667777777 65 789999999998765433 222221
Q ss_pred -ccc----CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCCccchHHHHHHhccCC
Q 044412 97 -FSS----LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY----SNKFFESRRVSRRLFDEMP 167 (311)
Q Consensus 97 -~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~a~~~~~~~~ 167 (311)
+.. .++.++|++.|+.-.+.| +...+..+-..|.. .++.++ |...++...
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~y~~g~g~~~~~~~----A~~~~~~a~ 250 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG-----------------DELGQLHLADMYYFGIGVTQDYTQ----SRVLFSQSA 250 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHH----HHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHcCCCCCCCHHH----HHHHHHHHH
Confidence 333 789999999998876543 34455556666654 566777 444444432
Q ss_pred C-CCHhHHHHHHHHHHH----H-----HHHHHhhCCC-CcHhHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCC
Q 044412 168 E-RKFATWNTMIDAYAR----L-----AELLFNKMPA-WDIRSWTTMITSYSQN-----KQFREALDAFNKTKKSGTGSD 231 (311)
Q Consensus 168 ~-~~~~~~~~li~~~~~----~-----a~~~~~~m~~-~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~ 231 (311)
+ .+...+..+-..|.. . |.+.|++..+ .+...+..+-..|... +++++|+..|++..+.| +
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 2 233333344334433 1 5555554432 2445566666666665 77788888887777654 3
Q ss_pred HHHHHHHHHHHhccC---ChhhHHHHHHh-----------------------hCChHHHHHHHhhcC-CCCchhHHHHHH
Q 044412 232 QVTMATVLSACAHLG---ALDLGRGIQIY-----------------------CRSLGRSLLVFFKLR-EKNLLCWNSITE 284 (311)
Q Consensus 232 ~~t~~~li~a~~~~~---~~~~a~~~~~~-----------------------~~~~~~a~~~~~~~~-~p~~~~~~~li~ 284 (311)
...+..|-..|...| +.++|...++. .++.++|...|++.. ..+...+..|-.
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~ 407 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344444545554434 56666666655 255666666666654 335667777777
Q ss_pred HHHh----cCChHHHHHHHHHHHHcC
Q 044412 285 ALAI----HGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 285 ~~~~----~g~~~~a~~~~~~M~~~g 306 (311)
.|.. .++.++|..+|++..+.|
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 7777 788888888888877654
No 74
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=3.6e-05 Score=60.15 Aligned_cols=162 Identities=13% Similarity=0.048 Sum_probs=112.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li 178 (311)
..|++++|.+.++.+... ......++..+-..|...|++++ |...+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~------------- 51 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH---------------PATASGARFMLGYVYAFMDRFDE----ARASFQA------------- 51 (203)
T ss_dssp ---CHHHHHHHHHHHHTS---------------TTTHHHHHHHHHHHHHHTTCHHH----HHHHHHH-------------
T ss_pred ccccHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHHHHhCcHHH----HHHHHHH-------------
Confidence 568889999855554321 22456788888899999999999 6666655
Q ss_pred HHHHHHHHHHHhhCCCC--cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHhccCChhh
Q 044412 179 DAYARLAELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGS--DQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 179 ~~~~~~a~~~~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~a~~~~~~~~~ 250 (311)
+.+++.....+ ...+++.+-..+...|++++|.+.+.+..+. |-.| ....+..+-..+...|++++
T Consensus 52 ------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 52 ------LQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp ------HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------HHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHH
Confidence 44444444432 3457888888999999999999999987652 2122 23457778888889999999
Q ss_pred HHHHHHhhCChHHHHHHHhhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 251 GRGIQIYCRSLGRSLLVFFKLREKN--LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 251 a~~~~~~~~~~~~a~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
|...++. +.++......+. ..++..+-..+...|++++|...+++..+
T Consensus 126 A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 126 ARQEYEK------SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9887643 444444433322 24568888899999999999999887653
No 75
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.25 E-value=3.7e-06 Score=73.26 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=149.5
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCC--CCe-----eeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHH
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNV-----FVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQ 126 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~-----~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (311)
....+...-..+ .+.|++++|...|++..+ |+. ..+.. +...|++++|+..|++.....
T Consensus 8 ~~~~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERL-CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 344555566677 899999999999988653 332 12222 788999999999999865421
Q ss_pred HHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCC-CC----HhHHHHHHHHHH---H--------------
Q 044412 127 VWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RK----FATWNTMIDAYA---R-------------- 183 (311)
Q Consensus 127 ~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-~~----~~~~~~li~~~~---~-------------- 183 (311)
...+..|. ..++..+-..|...|++++|.....+.++..+. ++ ..++..+-..|. +
T Consensus 78 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 78 -RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred -HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 11112222 557888888999999999955544333332221 11 113333322221 1
Q ss_pred ------H---------HHHHHhhCCCC--cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCC----HHHHHHHHHH
Q 044412 184 ------L---------AELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKKSG-TGSD----QVTMATVLSA 241 (311)
Q Consensus 184 ------~---------a~~~~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~li~a 241 (311)
. +.+++.....+ ...+|..+-..|...|++++|+..+++..+.. -.++ ..++..+-..
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1 44444444432 23468888899999999999999999976521 1122 3378888888
Q ss_pred HhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 242 CAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+...|++++|...++. +.++......+ ...++..+-..|...|++++|...+++..+
T Consensus 237 ~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 237 YIFLGEFETASEYYKK------TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHTTCHHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHH------HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999988877643 34443333211 146788999999999999999999988754
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.23 E-value=8.9e-06 Score=77.00 Aligned_cols=152 Identities=9% Similarity=0.044 Sum_probs=112.4
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
+.+.|++++|++.|++..+ +.|+ ...|+.+-.+|.+.|++++ |...+++..+.
T Consensus 19 ~~~~G~~~eAi~~~~kAl~----------------l~P~~~~a~~nLg~~l~~~g~~~e----A~~~~~~Al~l------ 72 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALE----------------VFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRI------ 72 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH----------------HCSCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH------
T ss_pred HHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh------
Confidence 3455666777777766654 2444 6788888889999999999 55555542210
Q ss_pred HHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHH
Q 044412 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~ 254 (311)
...+...|+.+-..|...|++++|++.|++..+. .|+ ...|+.+-.++...|++++|...
T Consensus 73 -----------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 73 -----------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1125678999999999999999999999998874 454 67889999999999999877665
Q ss_pred HHhhCChHHHHHHHhhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 255 QIYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
++. |.++ .| +...|..+...+...|++++|.+.+++..+
T Consensus 134 ~~~------Al~l-----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 134 YRT------ALKL-----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHH------HHHH-----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHH------HHHh-----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 532 2222 45 457899999999999999999988887653
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.22 E-value=0.00067 Score=58.48 Aligned_cols=159 Identities=8% Similarity=-0.027 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCC---C---CCH-hHHHHHHHHHHHH-----HHHHHhhC----C---CC-c
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMP---E---RKF-ATWNTMIDAYARL-----AELLFNKM----P---AW-D 196 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~---~---~~~-~~~~~li~~~~~~-----a~~~~~~m----~---~~-~ 196 (311)
.++..+-..+...|++++|.+...+.+.... . +.. ..+..+-..+... |...+++. + .+ .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 3456677788999999996655544443321 1 111 2334344444332 44444432 2 12 2
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHH-----HHHHHHhccCChhhHHHHHHhhCChHHHHHHHhh
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMA-----TVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~-----~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~ 270 (311)
..+|..+-..+...|++++|...+++.....-.++ ...+. .....+...|+.+.|...++.......
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~------- 246 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF------- 246 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC-------
Confidence 34677788888889999999999998765321221 11121 222336677777755555443221110
Q ss_pred cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 271 LREKN---LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 271 ~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.++ ...+..+...+...|++++|...+++...
T Consensus 247 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 247 --ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp --TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011 12456777888899999999998887643
No 78
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.18 E-value=7e-05 Score=63.23 Aligned_cols=184 Identities=8% Similarity=-0.068 Sum_probs=110.6
Q ss_pred cCChhHHHHhcccCCCCCeeeeeccccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCC
Q 044412 73 FHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNK 151 (311)
Q Consensus 73 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~ 151 (311)
.++++.|...|++. -+.+...|++++|.+.|.+..+.. .+.|-.+ -..+|+.+-..|.+.|+
T Consensus 29 ~~~~~~A~~~~~~a-------~~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~a~~~~~lg~~~~~~g~ 91 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-------AVAFKNAKQLEQAKDAYLQEAEAH----------ANNRSLFHAAKAFEQAGMMLKDLQR 91 (307)
T ss_dssp SCCHHHHHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHHHHHhCCC
Confidence 45666666665543 011455677777777777654311 1111111 14578888889999999
Q ss_pred CccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHHhCCChhHHHHHHHHHHhc---
Q 044412 152 FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD--IRSWTTMITSYSQNKQFREALDAFNKTKKS--- 226 (311)
Q Consensus 152 ~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--- 226 (311)
+++ |...+++ |.+++.+...+. ..+|+.+-..|.. |++++|+..|++-.+.
T Consensus 92 ~~~----A~~~~~~-------------------Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 92 MPE----AVQYIEK-------------------ASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp GGG----GHHHHHH-------------------HHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHH-------------------HHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence 999 5555554 444444444433 3467777777777 8888888888876542
Q ss_pred -CCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC-CC-chhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 227 -GTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-KN-LLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 227 -g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
|-.+ ...++..+-..+...|++++|...++. +.+++.+... +. ...+..+...+...|++++|...|++.
T Consensus 148 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQK------EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 135677777888888888877776643 2333222211 11 125556666667778888888887776
Q ss_pred H
Q 044412 303 T 303 (311)
Q Consensus 303 ~ 303 (311)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 5
No 79
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=9.6e-06 Score=71.03 Aligned_cols=186 Identities=9% Similarity=0.129 Sum_probs=113.1
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCch----hHHHHHHHHHHhCCCCccchHHHHHHhccC---CC-
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV----FVQTAMVDNYSYSNKFFESRRVSRRLFDEM---PE- 168 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~---~~- 168 (311)
+...|++++|++.|++..+.. +.+. .+|..+-..|...|++++|.....+.++.. ..
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAG---------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhCcHHHHHHHHHHHHHhc---------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 346778888888888776532 1222 478888889999999999555443333321 11
Q ss_pred C-CHhHHHHHHHHHHHH-----HHHHHhhC-------CCC--cHhHHHHHHHHHHhCCC-----------------hhHH
Q 044412 169 R-KFATWNTMIDAYARL-----AELLFNKM-------PAW--DIRSWTTMITSYSQNKQ-----------------FREA 216 (311)
Q Consensus 169 ~-~~~~~~~li~~~~~~-----a~~~~~~m-------~~~--~~~~y~~li~~~~~~g~-----------------~~~a 216 (311)
+ ...++..+-..|... |...+++. ..+ ...+|..+-..|...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 1 123444454444443 44444332 221 34478888888888899 8999
Q ss_pred HHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHHHHhc
Q 044412 217 LDAFNKTKKS----GTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEALAIH 289 (311)
Q Consensus 217 ~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~~~~~ 289 (311)
++.+.+..+. +-.| ...++..+-..+...|++++|...++. +.++......+ ....+..+...|...
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE------RLRIAREFGDRAAERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence 9888876442 2222 234677788888889999988877754 22222221111 123566677777777
Q ss_pred CChHHHHHHHHHHH
Q 044412 290 GFAHEALGMFDRMT 303 (311)
Q Consensus 290 g~~~~a~~~~~~M~ 303 (311)
|++++|..++++..
T Consensus 277 g~~~~A~~~~~~al 290 (411)
T 4a1s_A 277 GQFEDAAEHYKRTL 290 (411)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 77777777776654
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.17 E-value=0.00022 Score=59.71 Aligned_cols=140 Identities=11% Similarity=0.016 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhC-CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHHhCCC
Q 044412 136 VFVQTAMVDNYSYS-NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD--IRSWTTMITSYSQNKQ 212 (311)
Q Consensus 136 ~~~~~~ll~~~~~~-g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~~~g~ 212 (311)
..+++.+-..|... |++++ |...+++ |.+++.....+. ..+|+.+-..+...|+
T Consensus 117 a~~~~~lg~~~~~~lg~~~~----A~~~~~~-------------------Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAK----AIDCYEL-------------------AGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHH----HHHHHHH-------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCHHH----HHHHHHH-------------------HHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 45788888899996 99999 7666665 334443332221 3468888899999999
Q ss_pred hhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSDQ------VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEAL 286 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~------~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~ 286 (311)
+++|+..|++..+....... .+|..+..++...|+++.|...++..-.+.....- ......+..++.++
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-----~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-----SRESNFLKSLIDAV 248 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----cHHHHHHHHHHHHH
Confidence 99999999998875432221 25667777788888888776666553332221000 00112344556666
Q ss_pred H--hcCChHHHHHHHHHHH
Q 044412 287 A--IHGFAHEALGMFDRMT 303 (311)
Q Consensus 287 ~--~~g~~~~a~~~~~~M~ 303 (311)
. ..+++++|...|+++.
T Consensus 249 ~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HTTCTTTHHHHHHHHTTSS
T ss_pred HcCCHHHHHHHHHHhccCC
Confidence 4 4566888888776653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.10 E-value=4.7e-05 Score=60.97 Aligned_cols=152 Identities=10% Similarity=0.017 Sum_probs=104.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|++.|++..+.. ..++...+..+-.+|...|++++ |...++...+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~-------- 70 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLT--------------NNQDSVTAYNCGVCADNIKKYKE----AADYFDIAIK-------- 70 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--------------TTCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH--------
T ss_pred HHHccCHHHHHHHHHHHHhcc--------------CCCCcHHHHHHHHHHHHhhcHHH----HHHHHHHHHH--------
Confidence 456788888888888776532 12667777778888999999999 5555544221
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-H-------HHHHHHHHHHhccCCh
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-Q-------VTMATVLSACAHLGAL 248 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~-------~t~~~li~a~~~~~~~ 248 (311)
....+...|..+-..|...|++++|+..|++..+. .|+ . ..|..+=..+...|++
T Consensus 71 ---------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 71 ---------------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp ---------------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 11225677888999999999999999999998874 344 4 2344444555555555
Q ss_pred hhHHHHHHhhCChHHHHHHHhhcC--CCC---chhHHHHHHHHHhcCCh---------------------------HHHH
Q 044412 249 DLGRGIQIYCRSLGRSLLVFFKLR--EKN---LLCWNSITEALAIHGFA---------------------------HEAL 296 (311)
Q Consensus 249 ~~a~~~~~~~~~~~~a~~~~~~~~--~p~---~~~~~~li~~~~~~g~~---------------------------~~a~ 296 (311)
+ +|...|++.. .|+ ...|..+-..|...|+. ++|.
T Consensus 134 ~-------------~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 200 (228)
T 4i17_A 134 E-------------KAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV 200 (228)
T ss_dssp H-------------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred H-------------HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 5 5555555544 343 45667777777777776 8888
Q ss_pred HHHHHHHH
Q 044412 297 GMFDRMTY 304 (311)
Q Consensus 297 ~~~~~M~~ 304 (311)
..+++..+
T Consensus 201 ~~~~~a~~ 208 (228)
T 4i17_A 201 DYLGEAVT 208 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888765
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.09 E-value=8.7e-06 Score=77.06 Aligned_cols=152 Identities=8% Similarity=0.011 Sum_probs=99.4
Q ss_pred hHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcC
Q 044412 60 FLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF 132 (311)
Q Consensus 60 ~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~ 132 (311)
..++.|-..+ .+.|++++|.+.|++..+ |+ ...|+. +.+.|++++|++.|++..+ +
T Consensus 10 ~al~nLG~~~-~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----------------l 72 (723)
T 4gyw_A 10 DSLNNLANIK-REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----------------I 72 (723)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------h
Confidence 3445555555 555555555555554431 22 111211 5566677777777776654 2
Q ss_pred CCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCC
Q 044412 133 SSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNK 211 (311)
Q Consensus 133 ~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g 211 (311)
.|+ ...|+.+-.+|.+.|++++ |.+.+++..+. ...+...|+.+-..|...|
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~----A~~~~~kAl~l-----------------------~P~~~~a~~~Lg~~~~~~g 125 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQG----ALQCYTRAIQI-----------------------NPAFADAHSNLASIHKDSG 125 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcC
Confidence 343 6788888888999999999 55555442210 1125677888888888889
Q ss_pred ChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 212 QFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
++++|++.|++..+. .|+ ...|..+..++...|++++|.+.++.
T Consensus 126 ~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 126 NIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp CHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 999999999888764 454 56788888888888888888877655
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.06 E-value=0.00041 Score=63.16 Aligned_cols=132 Identities=9% Similarity=0.015 Sum_probs=75.6
Q ss_pred HhHHHHHHHHHHHH-----HHHHHhhCC--CC-cH-hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHH
Q 044412 171 FATWNTMIDAYARL-----AELLFNKMP--AW-DI-RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLS 240 (311)
Q Consensus 171 ~~~~~~li~~~~~~-----a~~~~~~m~--~~-~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~ 240 (311)
...|..+...+.+. |..+|++.. .| +. ..|......+.+.|++++|.++|++-.+. .|+ ...|.....
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHH
Confidence 44455544444432 555555432 22 22 35666666666666666666666665543 222 222221111
Q ss_pred -HHhccCChhhHHHHHHh---------------------hCChHHHHHHHhhcC--CC-C----chhHHHHHHHHHhcCC
Q 044412 241 -ACAHLGALDLGRGIQIY---------------------CRSLGRSLLVFFKLR--EK-N----LLCWNSITEALAIHGF 291 (311)
Q Consensus 241 -a~~~~~~~~~a~~~~~~---------------------~~~~~~a~~~~~~~~--~p-~----~~~~~~li~~~~~~g~ 291 (311)
.+...|+.+.|..+|+. .|+.+.|..+|++.. .| + ...|...+.-....|+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 12235666666666665 566667777776654 12 2 3378888998899999
Q ss_pred hHHHHHHHHHHHH
Q 044412 292 AHEALGMFDRMTY 304 (311)
Q Consensus 292 ~~~a~~~~~~M~~ 304 (311)
.+.+..+++++.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.04 E-value=4.2e-05 Score=70.42 Aligned_cols=153 Identities=4% Similarity=-0.149 Sum_probs=96.1
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
.|++++|++.|++..+. -+-+...|..+-..|.+.|++++ |...+++..+.+
T Consensus 2 ~g~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~--------- 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---------------RPQDFVAWLMLADAELGMGDTTA----GEMAVQRGLALH--------- 53 (568)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHTTS---------
T ss_pred CccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhC---------
Confidence 46788999999887553 13347788889999999999999 555554432211
Q ss_pred HHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhC
Q 044412 180 AYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR 259 (311)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~ 259 (311)
..+...|..+-..|...|++++|.+.|++..+.. +-+...+..+-.++...|++++|...++.
T Consensus 54 --------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~-- 116 (568)
T 2vsy_A 54 --------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTR-- 116 (568)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred --------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH--
Confidence 1256678888888888999999999999887752 23466788888888888888866665532
Q ss_pred ChHHHHHHHhhcCCCCchhHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 044412 260 SLGRSLLVFFKLREKNLLCWNSITEALAIH---GFAHEALGMFDRMTYE 305 (311)
Q Consensus 260 ~~~~a~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~M~~~ 305 (311)
+.+. ...+...+..+...+... |+.++|...+++..+.
T Consensus 117 ----al~~----~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 117 ----AHQL----LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp ----HHHH----CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ----HHHh----CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 1111 123456788888888888 8889998888887654
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.03 E-value=0.0001 Score=61.99 Aligned_cols=166 Identities=9% Similarity=-0.015 Sum_probs=105.5
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC-CCHhHHHHHHHHHHHH-----HHHHHhhCC--CC-----cHhH
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE-RKFATWNTMIDAYARL-----AELLFNKMP--AW-----DIRS 199 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----a~~~~~~m~--~~-----~~~~ 199 (311)
.++..++..+-..+...|+.++|+++..+..+..+. .+...+..++..+.+. |.+.+++|. .| +..+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 455555667778899999999955555554444332 2445677777777775 999998886 35 2455
Q ss_pred HHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhc---C
Q 044412 200 WTTMITSYSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL---R 272 (311)
Q Consensus 200 y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~---~ 272 (311)
...+..++.. .++.++|+.+|+++.+. .|+..+-..++.++.+.|++++|+..++......-. ++.. .
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~---~~~k~~~~ 251 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS---VEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH---TTTCHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---ccccccCC
Confidence 5666666333 34899999999998764 466455556666888999999887776432111000 0000 0
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 273 EKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..|..+.-.+|......|+ +|.+++.++++.
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1245566444444444576 788999998863
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.99 E-value=9.6e-05 Score=61.89 Aligned_cols=166 Identities=8% Similarity=-0.070 Sum_probs=111.7
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
+...|++++|++.|++..+.. .+.|-.++ ..+|+.+-.+|.+.|++++ |...++.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~a~~~~~lg~~~~~~g~~~~----A~~~~~~---------- 102 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQ----------KKAGNEDEAGNTYVEAYKCFKSGGNSVN----AVDSLEN---------- 102 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHH----------
T ss_pred HHHcCCHHHHHHHHHHHHHHH----------HHhCCHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHH----------
Confidence 445667777777776654310 11122222 5688999999999999999 7666665
Q ss_pred HHHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHHhC-CChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCC
Q 044412 176 TMIDAYARLAELLFNKMPAWD--IRSWTTMITSYSQN-KQFREALDAFNKTKKS----GTGSD-QVTMATVLSACAHLGA 247 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~a~~~~~~ 247 (311)
|.+++.....+. ..+|+.+-..|... |++++|+..|++-.+. |-.+. ..++..+-..+...|+
T Consensus 103 ---------Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 103 ---------AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp ---------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 445555554433 35788888999996 9999999999997653 11111 3568888888999999
Q ss_pred hhhHHHHHHhhCChHHHHHHHhhcCC-CCc-----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 248 LDLGRGIQIYCRSLGRSLLVFFKLRE-KNL-----LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 248 ~~~a~~~~~~~~~~~~a~~~~~~~~~-p~~-----~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+++|...++...... +. +.. ..|..+..++...|++++|...|++..+
T Consensus 174 ~~~A~~~~~~al~~~---------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 174 YIEASDIYSKLIKSS---------MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTT---------SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHH---------hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 987766654311111 11 111 1567778889999999999999988754
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.97 E-value=0.00021 Score=61.69 Aligned_cols=94 Identities=13% Similarity=-0.026 Sum_probs=63.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-Cc-hh
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NL-LC 278 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~-~~ 278 (311)
+..+...|++++|...+++.......+ ....+..+...+...|+.++|...++.. .........+ +. ..
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a------~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL------NENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHhCcchhhHHHH
Confidence 344778999999999999887643221 1335667778888889999888776542 2222222111 12 35
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 279 WNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+..+-.++...|+.++|...+++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6667788889999999999888765
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.90 E-value=4.4e-05 Score=60.53 Aligned_cols=152 Identities=7% Similarity=-0.000 Sum_probs=101.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHH----------------HHHHHHhCCCCccchHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTA----------------MVDNYSYSNKFFESRRVS 159 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~----------------ll~~~~~~g~~~~a~~~a 159 (311)
+...|++++|+..|++..+. .|+ ...|.. +-.+|.+.|++++ |
T Consensus 14 ~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A 73 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIAL----------------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK----A 73 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH----H
T ss_pred HHHCCCHHHHHHHHHHHHHh----------------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH----H
Confidence 44678888999888887653 232 233333 7788999999999 5
Q ss_pred HHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHH
Q 044412 160 RRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATV 238 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l 238 (311)
...++...+. ...+...|..+-..+...|++++|+..|++..+. .| +..++..+
T Consensus 74 ~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 128 (208)
T 3urz_A 74 YLFYKELLQK-----------------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFL 128 (208)
T ss_dssp HHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHH-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 5555542211 1125778889999999999999999999999874 45 45677777
Q ss_pred HHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchh--HHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 239 LSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLC--WNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 239 i~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
-.++...|..+.. .+...++....|+... +...-.++...|++++|...|++..+
T Consensus 129 g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 129 GNYYYLTAEQEKK-----------KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHH-----------HHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666554433221 4455555555565443 33344456678899999999998875
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.88 E-value=0.00023 Score=50.29 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~ 276 (311)
...|..+...+...|++++|.++|++..+.. +.+..++..+...+...|++++|..+++..- +. ...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------~~----~~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL------EL----DPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HH----CTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH------Hh----CCccH
Confidence 5678888999999999999999999998753 3467788889999999999997766653321 11 13466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.++..+...+...|++++|..+++++.+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 78899999999999999999999998764
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.87 E-value=0.00047 Score=54.23 Aligned_cols=130 Identities=12% Similarity=-0.097 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALD 218 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~ 218 (311)
+..+-..+...|++++ |...++... +|+...|..+-..|...|++++|++
T Consensus 9 ~~~~g~~~~~~~~~~~----A~~~~~~a~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKG----ALDAFSAVQ--------------------------DPHSRICFNIGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHHHHHHHHTTCHHH----HHHHHHTSS--------------------------SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCHHH----HHHHHHHHc--------------------------CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 4455667778888888 666666543 4467788899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhc-----------CCC-CchhHHHHHHHH
Q 044412 219 AFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL-----------REK-NLLCWNSITEAL 286 (311)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~-----------~~p-~~~~~~~li~~~ 286 (311)
.|++..+.. +.+...|..+-.++...|++++|...++.. .+....- ..| ....|..+-..|
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEA------LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHH------HHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 999988753 346678888899999999999777665431 1110000 000 126788899999
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 044412 287 AIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~~~ 305 (311)
...|++++|...|++..+.
T Consensus 132 ~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHc
Confidence 9999999999999998753
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.86 E-value=0.0002 Score=54.94 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=100.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--CCHhHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATW 174 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~ 174 (311)
+...|++++|+..|++..+. -+-+...+..+-..|.+.|++++ |...++.... |+.. +
T Consensus 16 ~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~----A~~~~~~a~~~~p~~~-~ 75 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDE---------------LQSRGDVKLAKADCLLETKQFEL----AQELLATIPLEYQDNS-Y 75 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHH---------------HHTSHHHHHHHHHHHHHTTCHHH----HHHHHTTCCGGGCCHH-H
T ss_pred HHHcCCHHHHHHHHHHHHHH---------------CCCcHHHHHHHHHHHHHCCCHHH----HHHHHHHhhhccCChH-H
Confidence 55678888998888876542 13356788889999999999999 8888887754 3222 2
Q ss_pred HHHHHHH--HHH-----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHh
Q 044412 175 NTMIDAY--ARL-----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACA 243 (311)
Q Consensus 175 ~~li~~~--~~~-----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~ 243 (311)
..+.... ... +...|++.. .| +...+..+-..+...|++++|...|++..+..-.+ +...+..+...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 2221111 111 455555443 34 57788899999999999999999999998754322 3568888999999
Q ss_pred ccCChhhHHHHHH
Q 044412 244 HLGALDLGRGIQI 256 (311)
Q Consensus 244 ~~~~~~~a~~~~~ 256 (311)
..|+.++|...++
T Consensus 156 ~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 156 ALGQGNAIASKYR 168 (176)
T ss_dssp HHCSSCHHHHHHH
T ss_pred HhCCCCcHHHHHH
Confidence 9999997776653
No 92
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.83 E-value=0.0019 Score=57.57 Aligned_cols=268 Identities=8% Similarity=-0.039 Sum_probs=137.3
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCCh---hHHHHhcccCCCCCeeeeec----cccC-
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFI---DYTILVFPQMQEPNVFVYHA----FSSL- 100 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~----~~~~- 100 (311)
.+.......|+...+.+++....+.|- +..+..|-..| ...|+. ++|..+|++..+.+...+.. +...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y-~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQ-VGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC-----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHH-HccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 345666677889999999999888873 33344444555 556766 89999998877653333222 2222
Q ss_pred ----CChhHHHHHHHHHHHCCCCch---------------------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccc
Q 044412 101 ----RHPLQAIAFYLYMLRAEVLLT---------------------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFES 155 (311)
Q Consensus 101 ----~~~~~a~~~~~~m~~~~~~p~---------------------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 155 (311)
++.++|++.|+.-.+.|...- ..+......| +...+..|-..|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 377899999988877653222 1111111112 233444555666666666665
Q ss_pred hHHHHHHhccCCCCCHhHHHHHHHHHHHH--------HHHHHhhCC---CCcHhHHHHHHHHHHhC----CChhHHHHHH
Q 044412 156 RRVSRRLFDEMPERKFATWNTMIDAYARL--------AELLFNKMP---AWDIRSWTTMITSYSQN----KQFREALDAF 220 (311)
Q Consensus 156 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~--------a~~~~~~m~---~~~~~~y~~li~~~~~~----g~~~~a~~~~ 220 (311)
..-+..++......+...+..+-..|... |.+.|..-. .++...+..+-..|... +++++|++.|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 55566666655544444555444444332 444444332 23344334455555433 5777788777
Q ss_pred HHHHhcCCCCCHHHHHHHHHH-H--hccCChhhHHHHHHh------------------hC-----ChHHHHHHHhhcCCC
Q 044412 221 NKTKKSGTGSDQVTMATVLSA-C--AHLGALDLGRGIQIY------------------CR-----SLGRSLLVFFKLREK 274 (311)
Q Consensus 221 ~~m~~~g~~p~~~t~~~li~a-~--~~~~~~~~a~~~~~~------------------~~-----~~~~a~~~~~~~~~p 274 (311)
++.. .| +...+..|-.. + ...++.++|...++. .| +.++|...|++-..-
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g 316 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGR 316 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhCC
Confidence 7766 33 22333333332 2 346777777777776 33 777788888777722
Q ss_pred CchhHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 044412 275 NLLCWNSITEALAI----HGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 275 ~~~~~~~li~~~~~----~g~~~~a~~~~~~M~~~g~ 307 (311)
+...+..|-..|.. ..+.++|..+|++-.+.|.
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 34455555555544 3378888888888766553
No 93
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.83 E-value=0.00032 Score=58.62 Aligned_cols=171 Identities=10% Similarity=0.019 Sum_probs=115.1
Q ss_pred HHHHHHHHHhhccCChhHHHHhcccCCC--CCee--------eeec---cccCCChhHHHHHHHHHHHCCCCchHHHHHH
Q 044412 61 LAKQFISFCTSRFHFIDYTILVFPQMQE--PNVF--------VYHA---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 61 ~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~--------~~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
.+...+..+ ...|++++|.+.+++..+ +... .+.. +...|++++|++.|++..+....
T Consensus 77 ~l~~~~~~~-~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------- 147 (293)
T 2qfc_A 77 QFKDQVIML-CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-------- 147 (293)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--------
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--------
Confidence 344566777 889999999988865431 1110 0111 67788999999999887643210
Q ss_pred HHhcCCCc--hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC---cHhHHHH
Q 044412 128 WKNGFSSP--VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW---DIRSWTT 202 (311)
Q Consensus 128 ~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~---~~~~y~~ 202 (311)
...+. ..+|+.+-..|...|++++ |...++. |.++++..+.. ...+|+.
T Consensus 148 ---~~~~~~~~~~~~~lg~~y~~~~~~~~----A~~~~~k-------------------al~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 148 ---GIDVYQNLYIENAIANIYAENGYLKK----GIDLFEQ-------------------ILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp ---SSCTTHHHHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHSCCCHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHHHHHcCCHHH----HHHHHHH-------------------HHHHHHhcCccccchHHHHHh
Confidence 01111 4588889999999999999 6666665 33444444322 2358889
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChhhH-HHHHHhhCChHHHHHHHhhcC
Q 044412 203 MITSYSQNKQFREALDAFNKTKKS----GTGSD-QVTMATVLSACAHLGALDLG-RGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~a~~~~~~~~~a-~~~~~~~~~~~~a~~~~~~~~ 272 (311)
+-..|...|++++|+..+++..+. +..+. ..+|..+-.++.+.|+.++| ...++ .|..+++...
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~------~Al~~~~~~~ 271 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK------KASFFFDILE 271 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH------HHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH------HHHHHHHHhC
Confidence 999999999999999999987642 22222 56788888999999999988 65442 4555554444
No 94
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.83 E-value=0.00089 Score=55.84 Aligned_cols=165 Identities=8% Similarity=-0.002 Sum_probs=111.7
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCch----hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPV----FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+...|++++|.+++++..+... ..|+. ..+..+...+...|++++|.......++.....
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--- 148 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEE-------------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--- 148 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC-------------CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC---
T ss_pred HHHHhhHHHHHHHHHHHhcccc-------------CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc---
Confidence 5678899999999988765321 12231 234456667777889999444433333321111
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC--cHhHHHHHHHHHHhCCChhHHHHHHHHHHh----c-CCCCCH-HHHHHHHHHHhc
Q 044412 173 TWNTMIDAYARLAELLFNKMPAW--DIRSWTTMITSYSQNKQFREALDAFNKTKK----S-GTGSDQ-VTMATVLSACAH 244 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~m~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~-~t~~~li~a~~~ 244 (311)
..+ -..+|+.+-..|...|++++|+..|++..+ . +..|.. .+|..+-..|.+
T Consensus 149 --------------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 149 --------------------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp --------------------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 011 134688999999999999999999999874 1 222332 378888999999
Q ss_pred cCChhhHHHHHHhhCChHHHHHHHhhcCC-CC-chhHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 044412 245 LGALDLGRGIQIYCRSLGRSLLVFFKLRE-KN-LLCWNSITEALAIHGF-AHEALGMFDRMT 303 (311)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~a~~~~~~~~~-p~-~~~~~~li~~~~~~g~-~~~a~~~~~~M~ 303 (311)
.|++++|...++ .|.++..+... +. ..+|..+-..|.+.|+ +++|...+++..
T Consensus 209 ~~~y~~A~~~~~------~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 209 DSRYEESLYQVN------KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHH------HHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999988764 34444444432 22 4678889999999995 699999888764
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.79 E-value=0.00051 Score=59.57 Aligned_cols=169 Identities=11% Similarity=0.068 Sum_probs=117.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS-SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
+...|++++|++.|++..+.... .+-. ....++..+-..|...|+++. |...+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~----A~~~~~~---------- 166 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHV----SMYHILQ---------- 166 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHH----------
T ss_pred HHHHCCHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHH----HHHHHHH----------
Confidence 67889999999999987653100 0001 124577888889999999999 6665555
Q ss_pred HHHHHHHHHHHHHHhhCCCC---cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCC
Q 044412 176 TMIDAYARLAELLFNKMPAW---DIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGS-DQVTMATVLSACAHLGA 247 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~~ 247 (311)
|.+++...... ...+++.+-..|...|++++|++.|.+..+. |-.+ ...++..+-..|...|+
T Consensus 167 ---------al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 167 ---------ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ---------HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 44455544431 2456788888889999999999988886652 2111 23467777788888899
Q ss_pred hhhHHHHHHhhCChHHHHHHHhhcCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 248 LDLGRGIQIYCRSLGRSLLVFFKLREKN-LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 248 ~~~a~~~~~~~~~~~~a~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+++|...+. .|..+++....|+ ..++..+-..|.+.|++++|..++++..+
T Consensus 238 ~~~A~~~~~------~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 238 DQMAVEHFQ------KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHH------HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 998887764 3444444444332 45778888888999999999999888765
No 96
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.79 E-value=0.00062 Score=59.03 Aligned_cols=169 Identities=15% Similarity=0.056 Sum_probs=122.7
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSS-PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWN 175 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~ 175 (311)
+...|++++|++.|++..+.-. ..+-.+ ...+|..+-..|...|++++ |...+.+
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~lg~~~~~~~~~~~----A~~~~~~---------- 168 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLI----------FVKDRIEKAEFFFKMSESYYYMKQTYF----SMDYARQ---------- 168 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGG----------GCCCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHH----------
T ss_pred HHHhcCHHHHHHHHHHHHHHHh----------hCCCHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHH----------
Confidence 6788999999999998765310 000111 24678888889999999999 6666665
Q ss_pred HHHHHHHHHHHHHHhhCCC--C-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCC
Q 044412 176 TMIDAYARLAELLFNKMPA--W-DIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGS-DQVTMATVLSACAHLGA 247 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~~ 247 (311)
|.+++..... + ...+++.+-..|...|++++|++.|.+..+. +-.+ ...++..+-..|...|+
T Consensus 169 ---------al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 169 ---------AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp ---------HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 4555555543 1 2457888889999999999999999987652 2111 12478888889999999
Q ss_pred hhhHHHHHHhhCChHHHHHHHhhcCC-CC-chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 248 LDLGRGIQIYCRSLGRSLLVFFKLRE-KN-LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 248 ~~~a~~~~~~~~~~~~a~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+++|...++ .|.++++.... |+ ..++..+-..|.+.|++++|...+++..+
T Consensus 240 ~~~A~~~~~------~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 240 YEDAIPYFK------RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHH------HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988764 45555555543 43 45788899999999999999999988653
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.76 E-value=0.00036 Score=57.03 Aligned_cols=153 Identities=9% Similarity=0.039 Sum_probs=102.5
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc----hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP----VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+.+.|++++|+..|++..+. .|+ ...+..+-.+|.+.|++++|......+.+.-+.
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---- 84 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTY----------------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---- 84 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGG----------------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHhCCHHHHHHHHHHHHHh----------------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----
Confidence 56788999999999998764 233 567778888999999999944443333333221
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHh--------CCChhHHHHHHHHHHhcCCCCCH-HHH-------
Q 044412 173 TWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQ--------NKQFREALDAFNKTKKSGTGSDQ-VTM------- 235 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~t~------- 235 (311)
.| ....+..+-.++.. .|++++|+..|++..+. .|+. ...
T Consensus 85 ---------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 85 ---------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIR 141 (261)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHH
T ss_pred ---------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHH
Confidence 11 23456666677777 89999999999998874 2432 222
Q ss_pred ----------HHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCC----chhHHHHHHHHHhc----------
Q 044412 236 ----------ATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN----LLCWNSITEALAIH---------- 289 (311)
Q Consensus 236 ----------~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~----~~~~~~li~~~~~~---------- 289 (311)
..+-..+.+.|+++ .|...|++.. .|+ ...+..+..+|...
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~-------------~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYE-------------AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHH-------------HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHH-------------HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 23344555666666 4555554443 343 34677777788766
Q ss_pred CChHHHHHHHHHHHHc
Q 044412 290 GFAHEALGMFDRMTYE 305 (311)
Q Consensus 290 g~~~~a~~~~~~M~~~ 305 (311)
|++++|...|++..+.
T Consensus 209 ~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 209 ERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 8899999999998763
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.76 E-value=0.00063 Score=50.97 Aligned_cols=98 Identities=6% Similarity=-0.086 Sum_probs=77.4
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK- 274 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p- 274 (311)
+...+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|...|+. |.++ .|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~------al~l-----~P~ 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAV------AFAL-----GKN 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH-----SSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHH------HHhh-----CCC
Confidence 45577788888999999999999999998752 33577888888899999999866655432 2221 34
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+...|..+-.+|...|++++|...|++..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778999999999999999999999998764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.75 E-value=0.00055 Score=57.11 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=57.0
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCC---chhHHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN---LLCWNS 281 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~---~~~~~~ 281 (311)
+...++.++|+..|++..+.. +.+...+..+-.++...|++++|...+ .+.. .|+ ...+..
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l-------------~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELL-------------FGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH-------------HHHHHHCTTGGGGHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHH-------------HHHHhcccccccchHHHH
Confidence 555677777888887776642 334667777777788878777555444 3322 243 557888
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 044412 282 ITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 282 li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+...+...|+.++|...+++-.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 8888888999888888777644
No 100
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.74 E-value=0.0015 Score=54.46 Aligned_cols=165 Identities=8% Similarity=-0.028 Sum_probs=115.6
Q ss_pred HHHHHhhccCChhHHHHhcccCCCCCe-----e----eee-c---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhc
Q 044412 65 FISFCTSRFHFIDYTILVFPQMQEPNV-----F----VYH-A---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNG 131 (311)
Q Consensus 65 ll~~~~~~~g~~~~a~~~~~~m~~~~~-----~----~~~-~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g 131 (311)
.+..+ .+.|++++|.+++++..+... . .+. . +...+++++|++.|++..+...
T Consensus 81 ~i~~~-~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~------------- 146 (293)
T 3u3w_A 81 QVIML-CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL------------- 146 (293)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC-------------
T ss_pred HHHHH-HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc-------------
Confidence 35667 889999999999988643111 1 111 1 6677899999999999876321
Q ss_pred CCCc----hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCC--C-cHhHHHHHH
Q 044412 132 FSSP----VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPA--W-DIRSWTTMI 204 (311)
Q Consensus 132 ~~~~----~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~--~-~~~~y~~li 204 (311)
-.++ ..+|+.+-..|...|++++ |...++. |.++++..+. + ...+|+.+-
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~g~~~~----A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 3u3w_A 147 TGIDVYQNLYIENAIANIYAENGYLKK----GIDLFEQ-------------------ILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHH-------------------HHHHHHhcccchhHHHHHHHHHH
Confidence 1222 3368999999999999999 6666665 3344444421 1 234788999
Q ss_pred HHHHhCCChhHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHhccCC-hhhHHHHHHhhCChHHHHHHHhhcC
Q 044412 205 TSYSQNKQFREALDAFNKTKK----SGTGSD-QVTMATVLSACAHLGA-LDLGRGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~a~~~~~~-~~~a~~~~~~~~~~~~a~~~~~~~~ 272 (311)
..|.+.|++++|+..+++..+ .+..+. ..+|..+-.++.+.|+ .++|...++ .|..+++...
T Consensus 204 ~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~------~Al~i~~~~~ 271 (293)
T 3u3w_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK------KASFFFDILE 271 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH------HHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH------HHHHHHHHhC
Confidence 999999999999999998654 333333 5678888888999995 588877653 4555555544
No 101
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.66 E-value=0.0011 Score=52.89 Aligned_cols=106 Identities=11% Similarity=-0.030 Sum_probs=70.0
Q ss_pred HHHHHhhCC---C-CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChhhHHHHHHhhC
Q 044412 185 AELLFNKMP---A-WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGALDLGRGIQIYCR 259 (311)
Q Consensus 185 a~~~~~~m~---~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~ 259 (311)
|.+.|++.. . ++...|..+-.++...|++++|++.|++..+. .|+ ...|..+-..+...|++++|...+
T Consensus 26 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~---- 99 (228)
T 4i17_A 26 AFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATL---- 99 (228)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHH----
Confidence 555555432 1 45556666667777777777777777777653 343 445666667777777777555544
Q ss_pred ChHHHHHHHhhcC--CCC-c-------hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 260 SLGRSLLVFFKLR--EKN-L-------LCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 260 ~~~~a~~~~~~~~--~p~-~-------~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
++.. .|+ . ..|..+-..+...|++++|...|++..+.
T Consensus 100 ---------~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 100 ---------TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp ---------HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred ---------HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 3332 233 3 45777788888999999999999998753
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.63 E-value=0.00033 Score=58.88 Aligned_cols=165 Identities=6% Similarity=-0.055 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCe-----eeeec----cccCCChhHHHHHHHHH
Q 044412 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNV-----FVYHA----FSSLRHPLQAIAFYLYM 113 (311)
Q Consensus 43 ~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~----~~~~~~~~~a~~~~~~m 113 (311)
+...++..++.+ .++..+...+-.++ ...|++++|++++.+-..++. ..+-. +.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~-~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQ-AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555555554 45666666777888 889999999999988633321 11111 89999999999999999
Q ss_pred HHCCCCchHHHHHHHHhcCCC-----chhHHHHHHHHHHh----CCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH
Q 044412 114 LRAEVLLTTVHGQVWKNGFSS-----PVFVQTAMVDNYSY----SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL 184 (311)
Q Consensus 114 ~~~~~~p~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~----~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 184 (311)
.+ ..| +..+..-|..++.. .++..+ |..+|+++.+.
T Consensus 163 ~~----------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~----A~~~f~El~~~--------------- 207 (310)
T 3mv2_B 163 TN----------------AIEDTVSGDNEMILNLAESYIKFATNKETATS----NFYYYEELSQT--------------- 207 (310)
T ss_dssp HH----------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH----HHHHHHHHHTT---------------
T ss_pred Hh----------------cCccccccchHHHHHHHHHHHHHHhCCccHHH----HHHHHHHHHHh---------------
Confidence 76 356 24555555555322 347888 66666664321
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc-----CC----CCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-----GT----GSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 185 a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~----~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
.|+..+-..++.++.+.|++++|.+.++.+.+. +- +-|+.+...+|......|+ .|.+++
T Consensus 208 ---------~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 208 ---------FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp ---------SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred ---------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 233223334444788889999999999977653 11 3356666455555555565 444443
No 103
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.62 E-value=0.00082 Score=49.65 Aligned_cols=140 Identities=10% Similarity=0.064 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHHhCCCh
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD--IRSWTTMITSYSQNKQF 213 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~~~g~~ 213 (311)
..++..+-..|...|++++ |...+.+ +.++......+. ..++..+-..+...|++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~----A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 65 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRD----AVIAHEQ-------------------RLLIAKEFGDKAAERIAYSNLGNAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCHHH----HHHHHHH-------------------HHHHHHHhCCchHHHHHHHHHHHHHHHcCCH
Confidence 3467778888999999999 5555554 222332222221 24688888899999999
Q ss_pred hHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHHH
Q 044412 214 REALDAFNKTKKS----GTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEAL 286 (311)
Q Consensus 214 ~~a~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~~ 286 (311)
++|.+.+++..+. +-.+ ....+..+-..+...|++++|...++. +.++......+ ....+..+-..+
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHccchHhHHHHHHHHHHHH
Confidence 9999999997652 1111 145677778888899999988887643 44444333322 235688888999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 044412 287 AIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 287 ~~~g~~~~a~~~~~~M~~ 304 (311)
...|++++|...+++..+
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 999999999999998764
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.61 E-value=0.00037 Score=54.81 Aligned_cols=138 Identities=7% Similarity=0.029 Sum_probs=93.4
Q ss_pred HHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchh
Q 044412 62 AKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVF 137 (311)
Q Consensus 62 ~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~ 137 (311)
+..+-..+ .+.|++++|...|++..+++...|.. +.+.|++++|++.|++..+. .+.+..
T Consensus 9 ~~~~g~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~ 72 (213)
T 1hh8_A 9 LWNEGVLA-ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---------------DKHLAV 72 (213)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHH
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CccchH
Confidence 34445566 78899999999998887665544433 77889999999999887653 244577
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHH
Q 044412 138 VQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREA 216 (311)
Q Consensus 138 ~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a 216 (311)
.|..+-.+|...|++++|.....+.++..+......|.. ...-..| +...|..+-..|...|++++|
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI------------LGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG------------GTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH------------hccccCccchHHHHHHHHHHHHccCHHHH
Confidence 888999999999999995444444444322211000000 0000011 346788889999999999999
Q ss_pred HHHHHHHHhcC
Q 044412 217 LDAFNKTKKSG 227 (311)
Q Consensus 217 ~~~~~~m~~~g 227 (311)
.+.|++..+..
T Consensus 141 ~~~~~~al~~~ 151 (213)
T 1hh8_A 141 EEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHcC
Confidence 99999988753
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.60 E-value=0.0009 Score=48.29 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=79.0
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~ 276 (311)
...|...-..|.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...++. |.++ ...+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~------al~~----~p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDT------CIRL----DSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH----CTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHH------HHHh----hhhhh
Confidence 3467777888999999999999999988752 34677888899999999999977665533 2221 13456
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
..|..+-.+|...|++++|...|++..+ +.|+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~ 113 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQ--VDPS 113 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcC
Confidence 7899999999999999999999999876 3454
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.57 E-value=0.00022 Score=65.56 Aligned_cols=145 Identities=3% Similarity=-0.150 Sum_probs=73.0
Q ss_pred cChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccCCChhHHHHHH
Q 044412 38 SSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLRHPLQAIAFY 110 (311)
Q Consensus 38 ~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~~~~~a~~~~ 110 (311)
|+.+++...++...+.. +-+...+..+-..+ .+.|++++|.+.|++..+ |+ ...+.. +...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAE-LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455555555554432 12345666666666 667777777777666532 22 222222 56666777777776
Q ss_pred HHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHh
Q 044412 111 LYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFN 190 (311)
Q Consensus 111 ~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~ 190 (311)
++..+.. +-+...+..+-.+|.+.|++++ |...+++..+.
T Consensus 81 ~~al~~~---------------p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~--------------------- 120 (568)
T 2vsy_A 81 QQASDAA---------------PEHPGIALWLGHALEDAGQAEA----AAAAYTRAHQL--------------------- 120 (568)
T ss_dssp HHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH---------------------
T ss_pred HHHHhcC---------------CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh---------------------
Confidence 6655421 2335566666666777777777 44443331110
Q ss_pred hCCCCcHhHHHHHHHHHHhC---CChhHHHHHHHHHHhc
Q 044412 191 KMPAWDIRSWTTMITSYSQN---KQFREALDAFNKTKKS 226 (311)
Q Consensus 191 ~m~~~~~~~y~~li~~~~~~---g~~~~a~~~~~~m~~~ 226 (311)
...+...+..+...+... |+.++|.+.+++..+.
T Consensus 121 --~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 121 --LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 112455666777777777 7777777777777664
No 107
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.57 E-value=0.00018 Score=56.05 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCC-CC--cHhHHHHHHHHHHhCCC
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP-AW--DIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~-~~--~~~~y~~li~~~~~~g~ 212 (311)
..++..+-..|...|++++ |...+++ +.++++... .+ ....++.+-..+...|+
T Consensus 66 ~~~~~~l~~~~~~~g~~~~----A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDA----ARRCFLE-------------------ERELLASLPEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHH-------------------HHHHHHHcCccHHHHHHHHHHHHHHHHHhCC
Confidence 5677888889999999999 6666665 444555444 22 24467888888999999
Q ss_pred hhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 213 FREALDAFNKTKKS----GTGS-DQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 213 ~~~a~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
+++|.+.+++..+. +-.+ -..++..+-..+...|++++|...++
T Consensus 123 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999987642 2111 12346777788888999998876653
No 108
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.56 E-value=0.0041 Score=51.73 Aligned_cols=169 Identities=8% Similarity=-0.029 Sum_probs=110.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|++.+++..+..-..... ......+..+...|...|++++|.....+.++.....
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------- 148 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEF---------QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------- 148 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHH---------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhH---------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------
Confidence 457889999999998876542100000 0011223445566788899999444433333322211
Q ss_pred HHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHhccCCh
Q 044412 177 MIDAYARLAELLFNKMPAWD--IRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSD-----QVTMATVLSACAHLGAL 248 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~t~~~li~a~~~~~~~ 248 (311)
..+. ..+|+.+-..|...|++++|+..|++..+. ...|+ ..+|..+-..|...|++
T Consensus 149 ----------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 149 ----------------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp ----------------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 1111 457889999999999999999999998631 11222 25888899999999999
Q ss_pred hhHHHHHHhhCChHHHHHHHhhcCCCC--chhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 044412 249 DLGRGIQIYCRSLGRSLLVFFKLREKN--LLCWNSITEALAIHGFAHEA-LGMFDRMT 303 (311)
Q Consensus 249 ~~a~~~~~~~~~~~~a~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a-~~~~~~M~ 303 (311)
++|...++. |.++......+. ..+|..+-..|.+.|+.++| ...+++..
T Consensus 213 ~~Al~~~~k------al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNK------AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHH------HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999887743 333333322111 45788889999999999999 77777653
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.56 E-value=0.0006 Score=50.98 Aligned_cols=129 Identities=7% Similarity=-0.019 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
...+..+-..+...|++++ |...++..... ...+..+|..+...+...|++++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~-----------------------~~~~~~~~~~~a~~~~~~~~~~~ 65 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYEN----AIKFYSQAIEL-----------------------NPSNAIYYGNRSLAYLRTECYGY 65 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------STTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHccCHHH----HHHHHHHHHHh-----------------------CCCChHHHHHHHHHHHHcCCHHH
Confidence 3456777788899999999 55555442110 12256778888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHH--HHHHHhcCCh
Q 044412 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSI--TEALAIHGFA 292 (311)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~l--i~~~~~~g~~ 292 (311)
|+..+.+..+.. +.+...|..+-.++...|++++|...++.. .+. .| +...+..+ ...+...|++
T Consensus 66 A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~-----~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 66 ALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETV------VKV-----KPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH-----STTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH------HHh-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999988753 345678888888899999998776665331 111 23 33444333 3447788999
Q ss_pred HHHHHHHHHHH
Q 044412 293 HEALGMFDRMT 303 (311)
Q Consensus 293 ~~a~~~~~~M~ 303 (311)
++|...+.+..
T Consensus 134 ~~A~~~~~~~~ 144 (166)
T 1a17_A 134 ERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHcccchH
Confidence 99999888764
No 110
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.55 E-value=0.00048 Score=48.53 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
...|..+...|...|++++ |...++..... ...+..+|..+...+...|++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~-----------------------~~~~~~~~~~la~~~~~~~~~~~ 61 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDE----AIEYYQKALEL-----------------------DPNNAEAWYNLGNAYYKQGDYDE 61 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH-----------------------CcCcHHHHHHHHHHHHHhCCHHH
Confidence 5678888899999999999 55555542210 11256778888999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
|+.+|+++.+.. +.+..++..+...+...|+++.|...++
T Consensus 62 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 62 AIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999998753 4467788889999999999887766553
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.55 E-value=0.00025 Score=66.91 Aligned_cols=168 Identities=10% Similarity=-0.036 Sum_probs=81.1
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcC-CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCC--C-CHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGF-SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--R-KFA 172 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~-~~~ 172 (311)
-...|++++|++.|++..+.... ..... +.+...+..+-.+|...|++++ |...+++..+ | +..
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~--------~~~~~~p~~~~~~~~~a~~~~~~g~~~~----A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALD--------ADGVDFSESVELPLMEVRALLDLGDVAK----ATRKLDDLAERVGWRWR 468 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC---------------CCTTCSHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHCCCHH
T ss_pred cccccCHHHHHHHHHHhhhhccc--------ccccccccchhHHHHHHHHHHhcCCHHH----HHHHHHHHhccCcchHH
Confidence 46788999999999988621000 00002 3456778888889999999999 5555554332 1 222
Q ss_pred HHHHHHHHHHHH-----HHHHHhhCC--CC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 173 TWNTMIDAYARL-----AELLFNKMP--AW-DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 173 ~~~~li~~~~~~-----a~~~~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
.|..+-..|... |.+.|++.. .| +...|..+-..+...|++++ ++.|++..+.. +-+...|..+-.++.+
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHH
Confidence 333333333332 444443332 12 23344444444444455555 44444444321 1123344444444444
Q ss_pred cCChhhHHHHHHhhCChHHHHHHHhhcC--CCC-chhHHHHHHHHHhcCC
Q 044412 245 LGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN-LLCWNSITEALAIHGF 291 (311)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~-~~~~~~li~~~~~~g~ 291 (311)
.|+++ +|...|++.. .|+ ...|..+..++...|+
T Consensus 547 ~g~~~-------------~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRV-------------GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHH-------------HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred cCCHH-------------HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 44444 4444444444 232 3345555555555444
No 112
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.55 E-value=0.0012 Score=47.10 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=78.1
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+...|..+...+...|++++|++.|++..+.. +.+...+..+-..+...|++++|...++. +.+. ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~------a~~~----~~~~ 83 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEE------CIQL----EPTF 83 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH------HHHH----CTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHH------HHHh----CCCc
Confidence 56778889999999999999999999988642 33677888888999999999977666533 2111 1235
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...|..+-..+...|++++|...|++..+.
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 678889999999999999999999987653
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.53 E-value=0.00094 Score=55.67 Aligned_cols=155 Identities=7% Similarity=-0.105 Sum_probs=111.7
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeeeeec-----cccC
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFVYHA-----FSSL 100 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-----~~~~ 100 (311)
......+...|+...+...++...+..- -+...+..+...+ .+.|++++|...+++... |+...... +...
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~-~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETL-IALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHH-HHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHH-HHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3555666778899999888888877642 2556777888888 999999999999999864 43322211 5566
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
++.++|+..|++.... -+.+...+..+-..|...|++++|.....+++..-+.
T Consensus 199 ~~~~~a~~~l~~al~~---------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~------------ 251 (287)
T 3qou_A 199 AADTPEIQQLQQQVAE---------------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT------------ 251 (287)
T ss_dssp HTSCHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred cccCccHHHHHHHHhc---------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------------
Confidence 7777788888777654 2445778888999999999999944444444333111
Q ss_pred HHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044412 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTK 224 (311)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 224 (311)
..+...+..+...|...|+.++|...|++-.
T Consensus 252 -------------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 252 -------------AADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -------------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 1236678899999999999999998888754
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.52 E-value=0.00064 Score=64.07 Aligned_cols=167 Identities=7% Similarity=-0.101 Sum_probs=122.5
Q ss_pred hhccChhhHHHHHHHHHH-------hccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC--CC-eeeeec----cccC
Q 044412 35 KKCSSIKELECVYATIVK-------TNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSL 100 (311)
Q Consensus 35 ~~~~~~~~~~~l~~~m~~-------~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~ 100 (311)
...++.+++.+.++...+ ..-+.+...+..+-..+ .+.|++++|.+.|++..+ |+ ...|.. +...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRAL-LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHH-HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 566778888888877761 11234556788888888 999999999999988763 33 333332 7888
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
|++++|++.|++..+.. +-+...|..+-.+|.+.|++++ .....+.++.-+
T Consensus 481 g~~~~A~~~~~~al~l~---------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P------------- 531 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF---------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND------------- 531 (681)
T ss_dssp TCHHHHHHHHHHHHHHS---------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-------------
T ss_pred CCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-------------
Confidence 99999999999986631 3356788888889999999998 877777665421
Q ss_pred HHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCC
Q 044412 181 YARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSACAHLGA 247 (311)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~~~~~~ 247 (311)
.+...|..+-..+.+.|++++|++.|++..+ +.|+ ...+..+..++...++
T Consensus 532 --------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 532 --------------GVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred --------------chHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 2567888999999999999999999998876 4576 4567777777766555
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.51 E-value=0.0015 Score=54.99 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChhhHHHHHH
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKS----GTGSD-QVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.+|+.+-..|...|++++|+..|++..+. +..+. ..++..+..++...|+++.|...++
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666666666666666666665541 11111 1244444455555566665555443
No 116
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.46 E-value=0.0015 Score=45.02 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=77.8
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK- 274 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p- 274 (311)
+...|..+-..+...|++++|...|++..+.. +.+...+..+-.++...|++++|...++.. .+. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~----~~~~ 73 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV------INV----IEDE 73 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHT----SCCT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH------HHh----Cccc
Confidence 45567778888999999999999999988753 345678888888899999998776655321 111 122
Q ss_pred -CchhHHHHHHHHHhc-CChHHHHHHHHHHHHcC
Q 044412 275 -NLLCWNSITEALAIH-GFAHEALGMFDRMTYEN 306 (311)
Q Consensus 275 -~~~~~~~li~~~~~~-g~~~~a~~~~~~M~~~g 306 (311)
+...|..+...+... |++++|.+.+++.....
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 567889999999999 99999999999988754
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.46 E-value=0.0051 Score=48.99 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=56.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHH-HHHHHH---HHHhccCChh-hHHHHHHhhCChHHHHHHHhhcC--CCCc----hh
Q 044412 210 NKQFREALDAFNKTKKSGTGSDQV-TMATVL---SACAHLGALD-LGRGIQIYCRSLGRSLLVFFKLR--EKNL----LC 278 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li---~a~~~~~~~~-~a~~~~~~~~~~~~a~~~~~~~~--~p~~----~~ 278 (311)
.|++++|+..|++..+. -|+.. .+.+.. ......+..+ ..-.++...|+...|...|+++. .|+. ..
T Consensus 109 ~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 186 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDA 186 (225)
T ss_dssp CHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHH
Confidence 46888999999988764 34432 111110 0000000000 00012222555566766666655 3543 46
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 279 WNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 279 ~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
+..+..+|.+.|+.++|...++.+...+
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8889999999999999999999888753
No 118
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.45 E-value=0.0019 Score=44.83 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=76.6
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+...|..+...+...|++++|...|++..+.. +.+...+..+-..+...|+++.|...++.. .+. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~----~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT------VDL----KPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHH----CTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHH------HHh----Cccc
Confidence 34567788888999999999999999988752 336778888888888989998776655331 111 1235
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...|..+...+...|++++|...+++..+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 678889999999999999999999988753
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.45 E-value=0.0018 Score=48.11 Aligned_cols=98 Identities=13% Similarity=0.005 Sum_probs=74.6
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+...+..+-..+...|++++|+..|++..+.. +.+...|..+-.++...|++++|...++.. ..+ ...+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~l----~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG------AVM----DIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----STTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH------Hhc----CCCC
Confidence 45567777888889999999999999987742 336777888888888989888666655332 111 1235
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
...|..+-.+|...|++++|...|++..+
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67888889999999999999999988765
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.44 E-value=0.0019 Score=45.78 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC-
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN- 275 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~- 275 (311)
...|..+...+...|++++|...|.+..+.. +.+...+..+...+...|+++.|...++..-.... .- .++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~-~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR------EN-REDY 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HS-TTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc------cc-chhH
Confidence 3567788888999999999999999988753 44677888888999999999988777644222111 10 122
Q ss_pred ---chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 ---LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ---~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
..+|..+...+...|++++|...|++..+.
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 667888999999999999999999998764
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.44 E-value=0.00087 Score=51.26 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCC--C-CHhHHHHHHHHHHHH-----HHHHHhhCCC--CcHhHHHHHHHH--
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPE--R-KFATWNTMIDAYARL-----AELLFNKMPA--WDIRSWTTMITS-- 206 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~-----a~~~~~~m~~--~~~~~y~~li~~-- 206 (311)
+..+-..+.+.|++++ |...+++..+ | +...+..+-..+... |...|++... |+...+ .+...
T Consensus 9 ~~~~a~~~~~~g~~~~----A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQ----ALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK-SLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHH----HHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHH----HHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH-HHHHHHH
Confidence 4455667889999999 8888887765 2 344555555555544 7777777653 333222 22111
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCC---chhHH
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN---LLCWN 280 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~---~~~~~ 280 (311)
+...+...+|+..|++..+. .| +...+..+-.++...|++++|.. .|++.. .|+ ...+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~-------------~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALE-------------LLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHH-------------HHHHHHTTCTTTTTTHHHH
T ss_pred HHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHH-------------HHHHHHHhCcccChHHHHH
Confidence 11222334567777776653 34 35667777777777777775544 444333 333 45788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 044412 281 SITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 281 ~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.+...+...|+.++|...|++...
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999998887654
No 122
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.44 E-value=0.0024 Score=46.08 Aligned_cols=99 Identities=7% Similarity=-0.043 Sum_probs=77.8
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK 274 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p 274 (311)
.+...|..+-..+...|++++|+..|.+..+.. +.+...|..+-.++...|+++.|...++. +.++ ...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------al~~----~p~ 75 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRR------ALEL----DGQ 75 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH----CTT
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHh----Cch
Confidence 467788888899999999999999999987753 33577888888889999999977665533 2111 123
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+...|..+-..+...|++++|...|++..+
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567889999999999999999999998764
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.43 E-value=0.0014 Score=46.82 Aligned_cols=96 Identities=8% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~ 212 (311)
..+...+..+-..+.+.|++++ |...++..... ...+...|..+...+...|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~-----------------------~~~~~~~~~~la~~~~~~~~ 65 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQ----AMKHYTEAIKR-----------------------NPKDAKLYSNRAACYTKLLE 65 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHH----HHHHHHHHHTT-----------------------CTTCHHHHHHHHHHHTTTTC
T ss_pred cccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc-----------------------CCCcHHHHHHHHHHHHHhcc
Confidence 4456778888889999999999 55555542221 12256778888889999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
+++|+..+++..+.. +.+...+..+-.++...|++++|...++
T Consensus 66 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 66 FQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999988752 3357788888889999999997776654
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.42 E-value=0.011 Score=49.65 Aligned_cols=222 Identities=7% Similarity=-0.025 Sum_probs=145.5
Q ss_pred HHHHHhhccChhhHHHHHHHHHHhccCcch-hHHHHHHHHHhhccC--ChhHHHHhcccCCCCCeee---eec----c--
Q 044412 30 IANQLKKCSSIKELECVYATIVKTNANLDC-FLAKQFISFCTSRFH--FIDYTILVFPQMQEPNVFV---YHA----F-- 97 (311)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~g--~~~~a~~~~~~m~~~~~~~---~~~----~-- 97 (311)
+..++......+++..+.+.++... |+- ..|+.-=..+ ...| ++++++++++.+...+... |+. +
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L-~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNIL-KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHH-HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3333444445556778888777764 443 4556555556 6677 9999999999886533333 333 3
Q ss_pred --ccC---CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCc--cchHHHHHHhccCCCCC
Q 044412 98 --SSL---RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF--ESRRVSRRLFDEMPERK 170 (311)
Q Consensus 98 --~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~a~~~~~~~~~~~ 170 (311)
.+. +++++++.+++.+.+. -+-+...|+.---.+.+.|.++ + +...++.+.+.|
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~---------------~pkny~aW~~R~~vl~~l~~~~~~~----EL~~~~~~i~~d 176 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSS---------------DPKNHHVWSYRKWLVDTFDLHNDAK----ELSFVDKVIDTD 176 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHC
T ss_pred HHHhccccCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhcccChHH----HHHHHHHHHHhC
Confidence 333 7889999999998775 3667888988888888899888 7 444443332211
Q ss_pred HhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ------FREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 171 ~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
..|...|+.--..+.+.|+ ++++++.+++..... +-|...|+-+-..+.+
T Consensus 177 -----------------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 177 -----------------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHER 232 (306)
T ss_dssp -----------------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHh
Confidence 2355566655555555555 889999999988753 3366677777777777
Q ss_pred cCChhh-HHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 245 LGALDL-GRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 245 ~~~~~~-a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|.... +..+....-..+. ...++...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~-------~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLEK-------DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGGG-------TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhccC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 666433 3233322211110 0124667889999999999999999999999875
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.42 E-value=0.0021 Score=47.14 Aligned_cols=98 Identities=12% Similarity=-0.033 Sum_probs=73.4
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+...+..+-..+...|++++|+..|++..... +-+...|..+-.++...|+++.|...++.. ..+ ...+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~----~p~~ 85 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYG------ALM----DINE 85 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----CTTC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHH------Hhc----CCCC
Confidence 34456667778888999999999999988742 336677888888888989888766655331 111 1235
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
...|..+-.+|...|++++|...|++..+
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788889999999999999999988764
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.40 E-value=0.0023 Score=45.28 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=74.1
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.. .+. ...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~----~~~~ 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERA------ICI----DPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----CTTC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHH------Hhc----CccC
Confidence 45677788888888999999999999987652 335777888888888888888776655331 111 1234
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...|..+...+...|++++|...+++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 667888888999999999999999887653
No 127
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.37 E-value=0.0073 Score=53.79 Aligned_cols=210 Identities=7% Similarity=-0.052 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhhccCCh----hHHHHhcccCCCCCeeeeec----cccCC---ChhHHHHHHHHHHHCCCCchHHHHHH
Q 044412 59 CFLAKQFISFCTSRFHFI----DYTILVFPQMQEPNVFVYHA----FSSLR---HPLQAIAFYLYMLRAEVLLTTVHGQV 127 (311)
Q Consensus 59 ~~~~~~ll~~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~----~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (311)
+.....|-..| ...+.+ +.+..++......+...+.. +...| +.++|++.|+.-.+.|
T Consensus 141 ~~a~~~Lg~~y-~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---------- 209 (452)
T 3e4b_A 141 PEAGLAQVLLY-RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---------- 209 (452)
T ss_dssp TTHHHHHHHHH-HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHH-HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----------
Confidence 33444444555 444533 33344444443322223222 55677 8888888888877765
Q ss_pred HHhcCCCchhHHHHHHHHHHhC----CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH---H-----HHHHHhhCCC-
Q 044412 128 WKNGFSSPVFVQTAMVDNYSYS----NKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR---L-----AELLFNKMPA- 194 (311)
Q Consensus 128 ~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~---~-----a~~~~~~m~~- 194 (311)
.++...+..|-..|... ++.++ |...|+.....+...+..+-..|.. . |.+.|++-.+
T Consensus 210 -----~~~a~~~~~Lg~~y~~g~~~~~d~~~----A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 210 -----TVTAQRVDSVARVLGDATLGTPDEKT----AQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp -----CSCHHHHHHHHHHHTCGGGSSCCHHH----HHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHHHHhCCCCCCCCHHH----HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 45555556666666554 57777 6666655442233344433333221 0 5555544332
Q ss_pred CcHhHHHHHHHHHHhCC-----ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHhhCChHHHH
Q 044412 195 WDIRSWTTMITSYSQNK-----QFREALDAFNKTKKSGTGSDQVTMATVLSACAH----LGALDLGRGIQIYCRSLGRSL 265 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~----~~~~~~a~~~~~~~~~~~~a~ 265 (311)
.+...+..|-..|. .| ++++|++.|++-. .-+...+..|-..|.. ..+.++|.
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~------------- 342 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKAL------------- 342 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHH-------------
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHH-------------
Confidence 24555555555555 34 7777777777665 2234444444444444 22455444
Q ss_pred HHHhhcCCC-CchhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 044412 266 LVFFKLREK-NLLCWNSITEALAI----HGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 266 ~~~~~~~~p-~~~~~~~li~~~~~----~g~~~~a~~~~~~M~~~g 306 (311)
..|++-.++ +......|-..|.. ..+.++|..+|+.-.+.|
T Consensus 343 ~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 343 DHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444443322 33344444444442 346677777776665554
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.36 E-value=0.00075 Score=48.73 Aligned_cols=92 Identities=8% Similarity=0.053 Sum_probs=58.8
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|++++|++.|++..+. -+.+...|..+-.+|.+.|++++ |...++...+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~-------- 75 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKR---------------DPENAILYSNRAACLTKLMEFQR----ALDDCDTCIR-------- 75 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH--------
T ss_pred HHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHhhHHHhhccHHH----HHHHHHHHHH--------
Confidence 45667777777777776543 13456677777777888888888 4444443211
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ 232 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 232 (311)
+...+...|..+-.+|...|++++|++.|++..+. .|+.
T Consensus 76 ---------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 76 ---------------LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp ---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ---------------hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCC
Confidence 01224666777777778888888888888877663 4543
No 129
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0032 Score=45.85 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=77.9
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhc
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD----QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~ 271 (311)
+...+..+-..+...|++++|++.|++..+. .|+ ...+..+-.++...|++++|...++. +.+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~------~~~~---- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASK------AIEK---- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHH------HHhh----
Confidence 5677888889999999999999999998874 566 57788888889999999977665533 1111
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 272 REKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 272 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...+...|..+-..+...|++++|...|++..+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1235678888999999999999999999988753
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0029 Score=45.05 Aligned_cols=97 Identities=12% Similarity=-0.004 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~ 276 (311)
...|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.++.+.|++++|...++. +.++ ...+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~------al~~----~p~~~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK------AIEK----DPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH----CTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHH------HHHh----CCCcH
Confidence 3456677788889999999999999988752 33578888899999999999977665533 2221 12356
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|..+-.++...|++++|...|++..+
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 7888999999999999999999998765
No 131
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.35 E-value=0.00039 Score=51.90 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=94.8
Q ss_pred ccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 98 SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
...|++++|+..++..... .|+ ...+-.+-..|.+.|++++ |...|+...+.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~----------------~p~~~~~~~~la~~y~~~~~~~~----A~~~~~~al~~------- 60 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS----------------PRQKSIKGFYFAKLYYEAKEYDL----AKKYICTYINV------- 60 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS----------------HHHHHTTHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------
T ss_pred HHcChHHHHHHHHHHhccc----------------CcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-------
Confidence 3456788888888776432 222 4455567788999999999 66555542211
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
...+..+|..+-..|...|++++|+..|++..+. .| +...|..+-..+.+.|+.+++...+
T Consensus 61 ----------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 61 ----------------QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1236778999999999999999999999998874 45 4678888888999999887554332
Q ss_pred HhhCChHHHHHHHhhcCCC-CchhHHHHHHHHHhcCC
Q 044412 256 IYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGF 291 (311)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~p-~~~~~~~li~~~~~~g~ 291 (311)
.+.|.++ .| +...|+..-..+...|+
T Consensus 123 -----~~~al~l-----~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 123 -----VERAAKL-----FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -----HHHHHHH-----STTCHHHHHHHHHHHHTCCC
T ss_pred -----HHHHHHh-----CcCCHHHHHHHHHHHHHhCc
Confidence 1123322 34 45566666666655553
No 132
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.33 E-value=0.0024 Score=57.56 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=82.7
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhc---CC---CCC-HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHh
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKS---GT---GSD-QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFF 269 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~---~p~-~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~ 269 (311)
..+++.|...|...|++++|+.++++..+- -+ .|+ ..+++.|-..|...|++++|+.++ ..|.++++
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~------~~Al~i~~ 424 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMI------CKAYAILL 424 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHH
Confidence 457999999999999999999999987542 22 333 357999999999999999999886 46777777
Q ss_pred hcCCCC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 270 KLREKN----LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 270 ~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
....|| ..+.+.+-.++...|.+++|..+|.+++++
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766443 245677778888999999999999999763
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.33 E-value=0.0026 Score=48.36 Aligned_cols=98 Identities=9% Similarity=0.166 Sum_probs=72.3
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HhccCCh--hhHHHHHHhhCChHHHHHHHhhcC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSA-CAHLGAL--DLGRGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a-~~~~~~~--~~a~~~~~~~~~~~~a~~~~~~~~ 272 (311)
+...|..+-..|...|++++|+..|++..+.. +.+...+..+-.+ +...|++ +.|...++. +.+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~------al~~----- 110 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDK------ALAL----- 110 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH------HHHH-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH------HHHh-----
Confidence 56778888889999999999999999987743 2356667777777 6677877 756554422 1111
Q ss_pred CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 273 EK-NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 273 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.| +...|..+...|...|++++|...|++..+.
T Consensus 111 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 23 4567888888999999999999999988764
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.32 E-value=0.0026 Score=47.77 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=74.1
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN 275 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~ 275 (311)
+...|..+-..+...|++++|+..|++..+.. +-+...|..+-.+|...|++++|...++. +.++ ...+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~----~p~~ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAEL------ATVV----DPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH----CTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHH------HHHh----CCCC
Confidence 45677788888889999999999999987752 23677788888888888888877665532 2211 1234
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
...|..+-..|...|++++|...|++..+
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67888888899999999999999888765
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.28 E-value=0.0013 Score=46.56 Aligned_cols=120 Identities=9% Similarity=-0.055 Sum_probs=83.6
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+...+...|++++ |...++..... ...+...|..+...+...|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~~~~~~~ 63 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEA----AVHFYGKAIEL-----------------------NPANAVYFCNRAAAYSKLGNYA 63 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHccCHHH----HHHHHHHHHHc-----------------------CCCCHHHHHHHHHHHHHhhchH
Confidence 45677778888999999999 55555442110 1125677888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFA 292 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (311)
+|.+.+.+..+.. +.+...+..+-..+...|+++.|...++.. .+. ...+...+..+...+...|++
T Consensus 64 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~----~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 64 GAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKA------LEL----DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH----STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHH------Hhc----CccchHHHHHHHHHHHHHhcC
Confidence 9999999988752 334677888888899999988776655331 111 122456677777777776654
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.28 E-value=0.00098 Score=49.79 Aligned_cols=117 Identities=14% Similarity=0.019 Sum_probs=82.6
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|...|++..+. .+.+..++..+..+|...|++++ |...++.....
T Consensus 23 ~~~~~~~~~A~~~~~~al~~---------------~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~a~~~------- 76 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIEL---------------NPSNAIYYGNRSLAYLRTECYGY----ALGDATRAIEL------- 76 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------
T ss_pred HHHccCHHHHHHHHHHHHHh---------------CCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-------
Confidence 44677888888888887653 24467888889999999999999 55555442110
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhccCChhhHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTM--ATVLSACAHLGALDLGRGI 254 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~a~~~~~~~~~a~~~ 254 (311)
...+...|..+-..+...|++++|...|++..+.. +-+...+ ..+...+...|++++|...
T Consensus 77 ----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 77 ----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12256678888899999999999999999988752 2234444 3344446777888888776
Q ss_pred HH
Q 044412 255 QI 256 (311)
Q Consensus 255 ~~ 256 (311)
+.
T Consensus 140 ~~ 141 (166)
T 1a17_A 140 DE 141 (166)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 137
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0071 Score=52.96 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=115.5
Q ss_pred cccCCChhHHHHHHHHHHHCCCCch----------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccC
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLT----------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~----------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~ 166 (311)
+.+.|++++|++.|.+..+..-... .... .....+..|...|.+.|++++ |.+.+...
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~al~~l~~~y~~~~~~~~----a~~~~~~~ 81 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN--------EQETSILELGQLYVTMGAKDK----LREFIPHS 81 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH--------HHHHHHHHHHHHHHHHTCHHH----HHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh--------hHHHHHHHHHHHHHHCCCHHH----HHHHHHHH
Confidence 3467788888888888765421100 0000 001246778899999999999 55555443
Q ss_pred CC----C-CHh---HHHHHHHHHHH-------------HHHHHHhhCCC-C-cHhHHHHHHHHHHhCCChhHHHHHHHHH
Q 044412 167 PE----R-KFA---TWNTMIDAYAR-------------LAELLFNKMPA-W-DIRSWTTMITSYSQNKQFREALDAFNKT 223 (311)
Q Consensus 167 ~~----~-~~~---~~~~li~~~~~-------------~a~~~~~~m~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m 223 (311)
.+ . +.. .....+..+.. .+..+...... + -..++..+...|...|++++|..++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 82 TEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 22 1 111 11111111110 02233333221 2 2357888899999999999999999987
Q ss_pred Hhc--CC--CC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC---chhHHHHHHHHHhcCChHHH
Q 044412 224 KKS--GT--GS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN---LLCWNSITEALAIHGFAHEA 295 (311)
Q Consensus 224 ~~~--g~--~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a 295 (311)
... +. .| ...+|..+...|...|++++|..+++. +..+......|. ...+..+...+...|++++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA------ARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH------HHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 652 21 22 245788899999999999999887643 444444444332 24677777778889999999
Q ss_pred HHHHHHHH
Q 044412 296 LGMFDRMT 303 (311)
Q Consensus 296 ~~~~~~M~ 303 (311)
...|.+..
T Consensus 236 ~~~~~~a~ 243 (434)
T 4b4t_Q 236 FSYFFESF 243 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.23 E-value=0.0011 Score=50.63 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=81.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|+..|++..+. -+.+...|..+-..|...|++++ |...++.....
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~------- 73 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWQNDYSN----SLLAYRQALQL------- 73 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---------------CCSCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------
T ss_pred hhhccCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHc-------
Confidence 56788999999999887654 24467888999999999999999 55555542210
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHH-HHhCCCh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITS-YSQNKQF--REALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRG 253 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~ 253 (311)
...+...|..+... +...|++ ++|...|++..+.. +-+...+..+-..+...|+++.|..
T Consensus 74 ----------------~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 74 ----------------RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp ----------------HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHH
Confidence 01245667777777 7788998 99999999988753 2346677788888888888886665
Q ss_pred HH
Q 044412 254 IQ 255 (311)
Q Consensus 254 ~~ 255 (311)
.+
T Consensus 137 ~~ 138 (177)
T 2e2e_A 137 LW 138 (177)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.16 E-value=0.0027 Score=54.23 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=95.8
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+-..|.+.|++++|.....+.++..+........ .+. ....-....|..+-.+|.+.|+++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~--------~~~----~~~~~~~~~~~nla~~~~~~g~~~ 213 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--------EAQ----KAQALRLASHLNLAMCHLKLQAFS 213 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH--------HHH----HHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH--------HHH----HHHHHHHHHHHHHHHHHHHcCCHH
Confidence 35577788888999999999444433333322211000000 000 000001468889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHHHHHHHhcCChH
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAH 293 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 293 (311)
+|+..|++..+.. +-+...|..+-.+|...|++++|...|+. |.++ .| +...+..+-..+...|+.+
T Consensus 214 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~------al~l-----~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 214 AAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQK------VLQL-----YPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH-----CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH------HHHH-----CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 33677888889999999999877665532 2222 34 4668888899999999999
Q ss_pred HH-HHHHHHHH
Q 044412 294 EA-LGMFDRMT 303 (311)
Q Consensus 294 ~a-~~~~~~M~ 303 (311)
+| ..++..|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88 44666664
No 140
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.08 E-value=0.002 Score=50.80 Aligned_cols=124 Identities=13% Similarity=0.043 Sum_probs=81.5
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|++++|+..|++..+.. +-+...+..+-.+|...|++++|.....++++.- +.+..+|..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 127 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA---------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIF 127 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 667889999999998876632 3457888999999999999999444444444332 234556666
Q ss_pred HHHHHHHH-------HHHHHhhCCCCcHhH--HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 177 MIDAYARL-------AELLFNKMPAWDIRS--WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 177 li~~~~~~-------a~~~~~~m~~~~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
+-..|... +...++....|+... +...-.++...|++++|+..|++..+ +.|+......+
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 66555432 556666666665433 33334445567899999999999886 56886554443
No 141
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.07 E-value=0.011 Score=48.00 Aligned_cols=130 Identities=8% Similarity=-0.059 Sum_probs=89.1
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-c---HhHHHHHHHHHHhC
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-D---IRSWTTMITSYSQN 210 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~---~~~y~~li~~~~~~ 210 (311)
+...+-.+-..+.+.|++++ |...|+..... .| + ...+..+-.+|...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~----A~~~~~~~l~~------------------------~p~~~~~~~a~~~lg~~~~~~ 65 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDR----AIEYFKAVFTY------------------------GRTHEWAADAQFYLARAYYQN 65 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHH----HHHHHHHHGGG------------------------CSCSTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHh------------------------CCCCcchHHHHHHHHHHHHHh
Confidence 45566667778889999999 55555543221 12 2 45677888889999
Q ss_pred CChhHHHHHHHHHHhcCC-CCC-HHHHHHHHHHHhc--------cCChhhHHHHHHhhCChHHHHHHHhhcC--CCC-ch
Q 044412 211 KQFREALDAFNKTKKSGT-GSD-QVTMATVLSACAH--------LGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN-LL 277 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~-~p~-~~t~~~li~a~~~--------~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~-~~ 277 (311)
|++++|+..|++..+..- .|. ...+..+-.++.. .|+++.|...|+ +.. .|+ ..
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~-------------~~l~~~p~~~~ 132 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQ-------------LFIDRYPNHEL 132 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHH-------------HHHHHCTTCTT
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHH-------------HHHHHCcCchh
Confidence 999999999999987521 222 3456666666766 777776655543 332 233 22
Q ss_pred hH-----------------HHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 278 CW-----------------NSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 278 ~~-----------------~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.+ ..+-..|...|++++|...|++..+.
T Consensus 133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33 45577888999999999999998764
No 142
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.04 E-value=0.00034 Score=52.24 Aligned_cols=132 Identities=5% Similarity=-0.093 Sum_probs=86.7
Q ss_pred hccCChhHHHHhcccCCCCC----eeeeec---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQEPN----VFVYHA---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMV 143 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~~~----~~~~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll 143 (311)
...|+++.|.+.++...+.+ ...++. |.+.|++++|++.|++..+.. +-+...|..+-
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---------------p~~~~a~~~lg 72 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---------------ERDPKAHRFLG 72 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHH
Confidence 44566777777776654321 111222 778889999999998876631 33578889999
Q ss_pred HHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHH-HHH
Q 044412 144 DNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDA-FNK 222 (311)
Q Consensus 144 ~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~-~~~ 222 (311)
.+|.+.|++++ |...|+...+. ...+...|..+-..|.+.|+.++|.+. +++
T Consensus 73 ~~~~~~~~~~~----A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 73 LLYELEENTDK----AVECYRRSVEL-----------------------NPTQKDLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHcCchHH----HHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999 55555542211 112567888888899999998877665 466
Q ss_pred HHhcCCCCC-HHHHHHHHHHHhccC
Q 044412 223 TKKSGTGSD-QVTMATVLSACAHLG 246 (311)
Q Consensus 223 m~~~g~~p~-~~t~~~li~a~~~~~ 246 (311)
..+ +.|+ ...|...-..+...|
T Consensus 126 al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 126 AAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHH--hCcCCHHHHHHHHHHHHHhC
Confidence 655 3454 455665555555544
No 143
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.04 E-value=0.045 Score=51.31 Aligned_cols=106 Identities=6% Similarity=-0.013 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhccCChhhHHHHHHh-------------------
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKS-G-TGSDQVTMATVLSACAHLGALDLGRGIQIY------------------- 257 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~li~a~~~~~~~~~a~~~~~~------------------- 257 (311)
.|-..+...-+.|.++.|..+|.+..+. + ..+......+.+.-. ..++.+.|+.+|+.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 5666666666677788888888887664 2 233333333333322 23457777777776
Q ss_pred --hCChHHHHHHHhhcCC--C----CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 258 --CRSLGRSLLVFFKLRE--K----NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 258 --~~~~~~a~~~~~~~~~--p----~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.++.+.|..+|+.... | ....|...++--.+.|+.+.+..+.+++.+.
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777788888887662 3 2357888888888999999999999999864
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.97 E-value=0.013 Score=41.51 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=67.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC--
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQ----VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN-- 275 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~-- 275 (311)
.+-..+...|++++|...|++..+.. |+. ..+..+-.++...|++++|...++.. .+. .|+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~------~~~-----~p~~~ 73 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDL------VSR-----YPTHD 73 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH-----CTTST
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH------HHH-----CCCCc
Confidence 44566778899999999999988743 332 46777778888888888666655321 111 243
Q ss_pred --chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 276 --LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 276 --~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...+..+-.++...|++++|...|++..+.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788888999999999999999998764
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.92 E-value=0.0038 Score=42.81 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+-..+.+.|++++ |...++...+ +...+...|..+-..+...|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----A~~~~~~a~~-----------------------~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTE----SIDLFEKAIQ-----------------------LDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHH----HHHHHHHHHH-----------------------HCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHhhhHHH----HHHHHHHHHH-----------------------hCcCCHHHHHHHHHHHHHccCHH
Confidence 35567778888999999999 5555544211 01235667888889999999999
Q ss_pred HHHHHHHHHHhcCCCC--CHHHHHHHHHHHhcc-CChhhHHHHHHh
Q 044412 215 EALDAFNKTKKSGTGS--DQVTMATVLSACAHL-GALDLGRGIQIY 257 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p--~~~t~~~li~a~~~~-~~~~~a~~~~~~ 257 (311)
+|+..|++..+.. +. +...+..+-.++... |+.++|.+.+..
T Consensus 58 ~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 58 EAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998753 22 477888999999999 999977666543
No 146
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.91 E-value=0.0068 Score=48.23 Aligned_cols=158 Identities=8% Similarity=0.036 Sum_probs=103.8
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCc--chhHHHHHHHHHhhccCChhHHHHhcccCCC--CCeee-----eec---
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANL--DCFLAKQFISFCTSRFHFIDYTILVFPQMQE--PNVFV-----YHA--- 96 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--~~~~~-----~~~--- 96 (311)
.....+-..|+..++...++.+++..... ....+..+..++ .+.|++++|...|++..+ |+... |..
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~-~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAY-YKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 34455667789999999999988764321 135677778888 999999999999988752 33221 111
Q ss_pred c------------------ccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHH-----------------HH
Q 044412 97 F------------------SSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQ-----------------TA 141 (311)
Q Consensus 97 ~------------------~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~-----------------~~ 141 (311)
+ ...|+.++|+..|++..+.. |+ +...+ -.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~-------------~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PN-------------SQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTC--TT-------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cC-------------ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13578999999999987642 21 11111 23
Q ss_pred HHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHHHHHH
Q 044412 142 MVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAF 220 (311)
Q Consensus 142 ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a~~~~ 220 (311)
+-..|.+.|++++|.....++++.-+. .| ....+..+..+|.+.|+.++|.+.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-------------------------~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPD-------------------------TQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-------------------------SHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcC-------------------------CCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 445677788888833333333332111 01 1246778899999999999999999
Q ss_pred HHHHhcC
Q 044412 221 NKTKKSG 227 (311)
Q Consensus 221 ~~m~~~g 227 (311)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 9988753
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.88 E-value=0.0037 Score=46.72 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
...+..+-..+.+.|++++ |...|+..... ...+...|..+-.+|...|++++
T Consensus 36 ~~~~~~lg~~~~~~g~~~e----A~~~~~~al~~-----------------------~P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEE----AEVFFRFLCIY-----------------------DFYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHccHHH
Confidence 4466677778899999999 66665543221 11267788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|+..|++..+.. +-+...|..+-.+|...|++++|...|+.
T Consensus 89 Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 89 AADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998742 22467888888999999999977766643
No 148
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.87 E-value=0.0083 Score=42.30 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=72.4
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+...|++++|+..|++..+. .+.+...+..+...|...|++++ |...++....
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~---------------~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~~-------- 66 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKEL---------------DPTNMTYITNQAAVYFEKGDYNK----CRELCEKAIE-------- 66 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHH--------
T ss_pred HHHhcCHHHHHHHHHHHHhc---------------CCccHHHHHHHHHHHHHhccHHH----HHHHHHHHHh--------
Confidence 44677888888888887653 24467788888889999999999 5555544211
Q ss_pred HHHHHHHHHHHHHhhCCCCc----HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAWD----IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSAC 242 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 242 (311)
+.... .++ ..+|..+...+...|++++|.+.|++..+. .|+......+-...
T Consensus 67 -----------~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 67 -----------VGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp -----------HHHHS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred -----------hcccc-chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 11111 111 567888889999999999999999999885 46665555544433
No 149
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.86 E-value=0.0049 Score=45.28 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHHhCCChh
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD--IRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~~~g~~~ 214 (311)
.++..+-..|...|++++ |...++. +.++......+. ...+..+-..+...|+++
T Consensus 50 ~~~~~l~~~~~~~g~~~~----A~~~~~~-------------------a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFET----ASEYYKK-------------------TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 106 (164)
T ss_dssp HHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHH-------------------HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 578888889999999999 6666555 333444443322 446778888899999999
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 215 EALDAFNKTKKS----GTGS-DQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 215 ~a~~~~~~m~~~----g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
+|.+.+++..+. +-.+ ...++..+-..+...|++++|...++
T Consensus 107 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 107 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999987642 2111 13467778888889999998877663
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.83 E-value=0.022 Score=44.81 Aligned_cols=166 Identities=5% Similarity=-0.150 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCC-eeeee-c---cccCC----ChhHHHHHHHHH
Q 044412 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPN-VFVYH-A---FSSLR----HPLQAIAFYLYM 113 (311)
Q Consensus 43 ~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~-~---~~~~~----~~~~a~~~~~~m 113 (311)
+.+.+....+.| ++..+..+-..| ...+++++|.++|++..+++ ...+. . +.. + +.++|+++|+.-
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~-~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTW-VSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 445555556553 666777777777 77888888888887765433 22221 1 444 5 899999999887
Q ss_pred HHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHH
Q 044412 114 LRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSY----SNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLF 189 (311)
Q Consensus 114 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~ 189 (311)
.+.| +...+..|-..|.. .++.++ |...++...+.+..
T Consensus 80 ~~~g-----------------~~~a~~~Lg~~y~~g~g~~~d~~~----A~~~~~~A~~~~~~----------------- 121 (212)
T 3rjv_A 80 VEAG-----------------SKSGEIVLARVLVNRQAGATDVAH----AITLLQDAARDSES----------------- 121 (212)
T ss_dssp HHTT-----------------CHHHHHHHHHHHTCGGGSSCCHHH----HHHHHHHHTSSTTS-----------------
T ss_pred HHCC-----------------CHHHHHHHHHHHHcCCCCccCHHH----HHHHHHHHHHcCCC-----------------
Confidence 6543 45566667777766 778888 66666654432200
Q ss_pred hhCCCCcHhHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc-C-----ChhhHHHHHHh
Q 044412 190 NKMPAWDIRSWTTMITSYSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL-G-----ALDLGRGIQIY 257 (311)
Q Consensus 190 ~~m~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~-~-----~~~~a~~~~~~ 257 (311)
..+...+..|-..|.. .+++++|+..|++-.+. ..+...+..|-..|... | +.++|...++.
T Consensus 122 ----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 122 ----DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp ----HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred ----cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 0015667777777777 78999999999998876 23444555555555432 2 67766666544
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.80 E-value=0.0077 Score=42.86 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-Cc
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NL 276 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~ 276 (311)
.+..+-..+.+.|++++|+..|++..+. .| +...|..+-.++...|++++|...++. |.++ .| +.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~------al~l-----~P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNH------ARML-----DPKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH-----CTTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh-----CCCCH
Confidence 3555667788999999999999999874 45 567788888888899998866655432 2211 34 46
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
..|..+-..+...|++++|...+++..+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888999999999999999999999875
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.80 E-value=0.017 Score=41.37 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=70.6
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|++++|++.|++..+. -+-+...|+.+-.+|.+.|++++ |...++...
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~---------------~p~~~~~~~nlg~~~~~~~~~~~----A~~~~~~al--------- 69 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIEL---------------DPSNITFYNNKAAVYFEEKKFAE----CVQFCEKAV--------- 69 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHH---------
T ss_pred HHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHhHHHHHHHhhhHHH----HHHHHHHHH---------
Confidence 55778899999999887653 13457788899999999999999 555554422
Q ss_pred HHHHHHHHHHHHHhhCCCC---cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 177 MIDAYARLAELLFNKMPAW---DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
++-...... -..+|..+-..+...|++++|++.|++-.+ ..||..+...|
T Consensus 70 ----------~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 70 ----------EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp ----------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred ----------HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 111111110 123677777888899999999999999776 35776665443
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.80 E-value=0.012 Score=48.68 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCCC--C-cHhHHHHHHHH
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPA--W-DIRSWTTMITS 206 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~~--~-~~~~y~~li~~ 206 (311)
+...+..+-..+.+.|++++|.....+....-+ .+...|..+-..|.+. |...+++..+ | +...|..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666777788888999994433333333211 2333444444444432 4444444332 2 45566666666
Q ss_pred HHhCCChhHHHHHHHHHHh
Q 044412 207 YSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~ 225 (311)
|...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6677777777776666544
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0055 Score=43.58 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=56.9
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|++++|+..|++..+. .+.+...|..+-.+|.+.|++++ |...++...+.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~------- 67 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKR---------------APEDARGYSNRAAALAKLMSFPE----AIADCNKAIEK------- 67 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------
T ss_pred HHHhcCHHHHHHHHHHHHHh---------------CCCChHHHHHHHHHHHHhcCHHH----HHHHHHHHHHh-------
Confidence 44667777777777776553 13356777777778888888888 44444331110
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
...+...|..+-.++...|++++|+..|++..+
T Consensus 68 ----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 68 ----------------DPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 112456677777778888888888888887765
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.75 E-value=0.0092 Score=42.85 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=74.6
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~ 212 (311)
..+...|..+-..+...|++++ |...+...... ...+...|..+-..+...|+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~-----------------------~~~~~~~~~~l~~~~~~~~~ 58 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPE----AAACYGRAITR-----------------------NPLVAVYYTNRALCYLKMQQ 58 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCcHHH----HHHHHHHHHhh-----------------------CcCcHHHHHHHHHHHHHhcC
Confidence 3457788888899999999999 55555542211 12256788889999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+++|+..|++..+.. +-+...+..+-.++...|+++.|...+..
T Consensus 59 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 59 PEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999988753 33567888889999999999988777644
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.75 E-value=0.016 Score=41.59 Aligned_cols=101 Identities=12% Similarity=-0.031 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC---
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK--- 274 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p--- 274 (311)
..+..+=..+.+.|++++|++.|++..+.. +-+...|..+-.+|...|++++|...++. |.++-......
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEK------AVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHH------HHHhCcccchhhHH
Confidence 457777888999999999999999988742 23467788899999999999988776644 22221111110
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
-..+|..+-..+...|++++|.+.|++-...
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0136777788889999999999999987653
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.74 E-value=0.0013 Score=46.56 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
...+..+-.++...|++++|...+++..
T Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 61 QALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 158
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.73 E-value=0.011 Score=55.49 Aligned_cols=200 Identities=8% Similarity=-0.021 Sum_probs=117.0
Q ss_pred CCCchhhhHHHHHHHHhhccChhhHH-HHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCC---------
Q 044412 19 PTSVSFIRIHIIANQLKKCSSIKELE-CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQE--------- 88 (311)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~--------- 88 (311)
|..+.. .-.+...+...+....+. .+++..+.. ++.+...|-..+... -+.|+++.|.++|+...+
T Consensus 340 p~~~~l--W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~e-e~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 340 CFAPEI--WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQY-ELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp TTCHHH--HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 444443 445566666677777774 888777753 345666677777777 788888888888877642
Q ss_pred ----CC------------eeeeec----cccCCChhHHHHHHHHHHHC-CCCchHHHHHHHHhcCCCchhHHHHHHHHHH
Q 044412 89 ----PN------------VFVYHA----FSSLRHPLQAIAFYLYMLRA-EVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS 147 (311)
Q Consensus 89 ----~~------------~~~~~~----~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~ 147 (311)
|. ...|-. ..+.|..+.|..+|....+. +. ..+...+..+.+. .
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-------------~~~~lyi~~A~lE--~ 480 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-------------VTPDIYLENAYIE--Y 480 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-------------SCTHHHHHHHHHH--H
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------CChHHHHHHHHHH--H
Confidence 21 012222 34556778888888877543 10 1222333333333 2
Q ss_pred hC-CCCccchHHHHHHhccCCC--C-CHhHHHHHHHHHHHH-----HHHHHhhCCC--C----cHhHHHHHHHHHHhCCC
Q 044412 148 YS-NKFFESRRVSRRLFDEMPE--R-KFATWNTMIDAYARL-----AELLFNKMPA--W----DIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 148 ~~-g~~~~a~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~-----a~~~~~~m~~--~----~~~~y~~li~~~~~~g~ 212 (311)
+. ++.+. |+.+|+.+.+ | +...|...+.-.... |+.+|++... | ....|...+.-=...|+
T Consensus 481 ~~~~d~e~----Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 481 HISKDTKT----ACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp TTTSCCHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HhCCCHHH----HHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 33 44777 5555554433 2 233333333333222 6777766442 2 34578888888888899
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACA 243 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 243 (311)
.+.+.++.+++.+. -|+......+++=|.
T Consensus 557 ~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 557 LNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp SHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 99999999998875 455555555555443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.026 Score=40.76 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=70.0
Q ss_pred CchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc----HhHHHHHHHHHHh
Q 044412 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD----IRSWTTMITSYSQ 209 (311)
Q Consensus 134 ~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~----~~~y~~li~~~~~ 209 (311)
.+...+..+-..+...|++++ |...++...+. .|+ ...|..+-..|..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~----A~~~~~~a~~~------------------------~~~~~~~~~~~~~~a~~~~~ 77 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGG----ALAAYTQALGL------------------------DATPQDQAVLHRNRAACHLK 77 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHH----HHHHHHHHHTS------------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHH------------------------cccchHHHHHHHHHHHHHHH
Confidence 356678888889999999999 55555442221 233 5678888888999
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 210 NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.|++++|+..+++..+.. +.+...+..+-.++...|++++|...++
T Consensus 78 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 78 LEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp TTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987752 2356778888888889898887766653
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.69 E-value=0.0078 Score=41.54 Aligned_cols=94 Identities=9% Similarity=0.008 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+...+...|++++ |...++..... ...+...|..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~~~~~~~ 55 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDD----ALQCYSEAIKL-----------------------DPHNHVLYSNRSAAYAKKGDYQ 55 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHcccHHH----HHHHHHHHHHH-----------------------CCCcHHHHHHHHHHHHhhccHH
Confidence 34567778888999999999 55555442110 1125667888888889999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
+|...+++..+.. +.+...+..+..++...|+++.|...++
T Consensus 56 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 56 KAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999988753 3357778888888989888886666553
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.68 E-value=0.0052 Score=55.23 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=82.4
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|++++|++.|++..+. .+-+...|..+-.+|.+.|++++ |...+++..+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---------------~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~-------- 68 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---------------NPSNAIYYGNRSLAYLRTECYGY----ALGDATRAIE-------- 68 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHH--------
T ss_pred HHHhCCHHHHHHHHHHHHHh---------------CCccHHHHHHHHHHHHHhcCHHH----HHHHHHHHHH--------
Confidence 67889999999999988663 23457889999999999999999 5555443221
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHH--HhccCChhhHHH
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-QVTMATVLSA--CAHLGALDLGRG 253 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a--~~~~~~~~~a~~ 253 (311)
+...+...|..+-.+|...|++++|++.|++..+. .|+ ...+..+-.+ +.+.|++++|..
T Consensus 69 ---------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 69 ---------------LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp ---------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred ---------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11235678888999999999999999999998874 232 2334444334 778888998887
Q ss_pred HHH
Q 044412 254 IQI 256 (311)
Q Consensus 254 ~~~ 256 (311)
.++
T Consensus 132 ~~~ 134 (477)
T 1wao_1 132 GDE 134 (477)
T ss_dssp ---
T ss_pred ccc
Confidence 776
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.67 E-value=0.03 Score=46.30 Aligned_cols=97 Identities=7% Similarity=-0.017 Sum_probs=71.3
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK 274 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p 274 (311)
+...+..+-..+...|++++|+..|++..+. .| +...|..+-.++.+.|++++|...++..-..+ ..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------p~ 70 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD----------GQ 70 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----------TT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------CC
Confidence 3456677778888899999999999988774 34 66778888888888888886655443322211 23
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 275 NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+...|..+-.+|...|++++|...|++..+
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788888889999999999998887654
No 163
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.63 E-value=0.0079 Score=44.53 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
...+..+-..+.+.|++++ |...|+..... ...+...|..+-.+|...|++++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~----A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYED----AHXVFQALCVL-----------------------DHYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCChHH----HHHHHHHHHHc-----------------------CcccHHHHHHHHHHHHHHhhHHH
Confidence 4566677778999999999 55555542211 12367788888889999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|+..|++..+.. +-+...+..+-.++...|++++|...++.
T Consensus 74 A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 74 AIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988752 23567788888899999999977776643
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.56 E-value=0.0097 Score=43.47 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFRE 215 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~ 215 (311)
...+..+-..+.+.|++++ |...|+..... ...+...|..+-.+|...|++++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~----A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~ 70 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDD----AQKIFQALCML-----------------------DHYDARYFLGLGACRQSLGLYEQ 70 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHccHHH----HHHHHHHHHHh-----------------------CCccHHHHHHHHHHHHHHhhHHH
Confidence 3445556678889999999 55555542211 11256778888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 216 ALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
|+..|++..+.. +-+...+..+-.++...|++++|...++.
T Consensus 71 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 71 ALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988753 33566778888889999999977776643
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.54 E-value=0.011 Score=44.31 Aligned_cols=95 Identities=6% Similarity=-0.070 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+-..|.+.|++++ |...|+...+. ...+...|..+-.+|...|+++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~----A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~ 62 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSK----AIDLYTQALSI-----------------------APANPIYLSNRAAAYSASGQHE 62 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------STTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-----------------------CCcCHHHHHHHHHHHHHccCHH
Confidence 45677788889999999999 55555542211 1125778888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+|+..|++..+.. +-+...|..+-.++...|++++|...++.
T Consensus 63 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 63 KAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999988753 23477888888999999999977766543
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.53 E-value=0.052 Score=42.61 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccC
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM 166 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~ 166 (311)
+...+..|-..|...+++++ |...|+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~----A~~~~~~a 44 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQK----AEYWAQKA 44 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHH----HHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHH----HHHHHHHH
Confidence 56677777778888899999 66666553
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.53 E-value=0.024 Score=40.03 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=64.9
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-h---hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-V---FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFA 172 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~---~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~ 172 (311)
+...|++++|++.|++..+. .|+ . ..+..+-.+|.+.|++++|......+.+.-+...
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~-- 73 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLEL----------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD-- 73 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST--
T ss_pred HHHhCCHHHHHHHHHHHHHH----------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc--
Confidence 45678999999999988653 233 2 4777788889999999994443333333211100
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 044412 173 TWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV 233 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 233 (311)
.....+..+-.++...|++++|...|++..+. .|+..
T Consensus 74 ----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 74 ----------------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp ----------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred ----------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 01455777788889999999999999998875 35544
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.52 E-value=0.0067 Score=42.66 Aligned_cols=106 Identities=6% Similarity=0.002 Sum_probs=66.9
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHH
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMI 178 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li 178 (311)
..|++++|+..|++..+.+.. -+-+...+..+-.+|.+.|++++ |...+++..+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~------------~p~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~--------- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ------------GKDLAECYLGLGSTFRTLGEYRK----AEAVLANGVKQ--------- 56 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC------------HHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHHcCCC------------CccHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh---------
Confidence 457888999999888653210 02235678888889999999999 55555542211
Q ss_pred HHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Q 044412 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSACA 243 (311)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~a~~ 243 (311)
...+...|..+-.++...|++++|+..|++..+. .-.|+...|...+..+.
T Consensus 57 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 57 --------------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred --------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 0124667888889999999999999999988764 22333344444444443
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.46 E-value=0.022 Score=48.51 Aligned_cols=98 Identities=13% Similarity=-0.031 Sum_probs=78.2
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHhccCChhhHHHHHHhhC
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD----------------QVTMATVLSACAHLGALDLGRGIQIYCR 259 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~t~~~li~a~~~~~~~~~a~~~~~~~~ 259 (311)
+...|..+-..|.+.|++++|+..|++..+.. |+ ...|..+-.++.+.|++++|...++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~-- 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK-- 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--
Confidence 35578888889999999999999999988753 43 47889999999999999977666533
Q ss_pred ChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 260 ~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
|.++ ...+...|..+-.+|...|++++|...|++..+.
T Consensus 222 ----al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 222 ----ALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp ----HHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2222 1236778999999999999999999999998763
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.42 E-value=0.043 Score=42.33 Aligned_cols=95 Identities=9% Similarity=0.031 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCC--------------HHHHHHHHHHHhccCChhhHHHHHHhhCChHH
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSG-TGSD--------------QVTMATVLSACAHLGALDLGRGIQIYCRSLGR 263 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--------------~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 263 (311)
.+..+-..+...|++++|+..|.+..+.. -.|+ ...|..+-.++...|++++|...++.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------ 113 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK------ 113 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH------
Confidence 34444455555566666666666655421 0110 14455555555555555544444322
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 264 SLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 264 a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
+.++ ...+...|..+-.+|...|++++|...|++..
T Consensus 114 al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 114 VLKI----DKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHh----CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1111 01233445555555555555555555555543
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.42 E-value=0.028 Score=43.49 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-Cc
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NL 276 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~ 276 (311)
..|..+-.+|...|++++|+..+++..+.. +.+...+..+-.++...|+++.|...++. +.++ .| +.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~------al~~-----~p~~~ 156 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK------AASL-----NPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHH-----STTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH------HHHH-----CCCcH
Confidence 678888889999999999999999988752 34567888888889999999877665533 2111 23 45
Q ss_pred hhHHHHHHHHHhcCChHHHH-HHHHHHHHcC
Q 044412 277 LCWNSITEALAIHGFAHEAL-GMFDRMTYEN 306 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~-~~~~~M~~~g 306 (311)
..+..+-..+...++.+++. ..+..|...|
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67777777777777777766 4566655443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.12 Score=45.09 Aligned_cols=193 Identities=7% Similarity=-0.068 Sum_probs=128.3
Q ss_pred HHHhhccChhhHHHHHHHHHHhccCcch----------------hHHHHHHHHHhhccCChhHHHHhcccCCC-----CC
Q 044412 32 NQLKKCSSIKELECVYATIVKTNANLDC----------------FLAKQFISFCTSRFHFIDYTILVFPQMQE-----PN 90 (311)
Q Consensus 32 ~~l~~~~~~~~~~~l~~~m~~~g~~p~~----------------~~~~~ll~~~~~~~g~~~~a~~~~~~m~~-----~~ 90 (311)
.-+...|+..++.+.+....+..-.... ..+..+...| .+.|++++|.+.+.+..+ ++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y-~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLY-VTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455668888888888888765322111 2467888999 999999999999987752 11
Q ss_pred eee----eec----cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHH
Q 044412 91 VFV----YHA----FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRR 161 (311)
Q Consensus 91 ~~~----~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~ 161 (311)
..+ .+. +...|+.+++.+++++.... ..+.+..+. ..++..+...|...|++++|..+..+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF----------AKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH----------HHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------HHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 111 111 56678899999998876432 122223333 56788889999999999994444333
Q ss_pred HhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC--HHH
Q 044412 162 LFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREALDAFNKTKKS----GTGSD--QVT 234 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t 234 (311)
+....... +..+ ...+|..++..|...|++++|..++++.... +..|. ...
T Consensus 161 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 161 LLREFKKL----------------------DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHTTS----------------------SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHhc----------------------ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 33322211 1122 2457889999999999999999999887542 22222 345
Q ss_pred HHHHHHHHhccCChhhHHHHHHh
Q 044412 235 MATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 235 ~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+..+...+...|+++.|...|..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 66777778888999998877655
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.28 E-value=0.024 Score=51.01 Aligned_cols=133 Identities=8% Similarity=-0.069 Sum_probs=92.4
Q ss_pred HhhccChhhHHHHHHHHHHhc---c---Ccc-hhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeeccccCCChhHH
Q 044412 34 LKKCSSIKELECVYATIVKTN---A---NLD-CFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHAFSSLRHPLQA 106 (311)
Q Consensus 34 l~~~~~~~~~~~l~~~m~~~g---~---~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~a 106 (311)
+...|+..+++.+++...+.. + .|+ ..+++.|...| ...|++++|..++ +++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~--------------------~~a 377 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL-SYLQAYEEASHYA--------------------RRM 377 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHH--------------------HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHhcCHHHHHHHH--------------------HHH
Confidence 456678888877777666432 1 222 35778888888 8888888887776 666
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHhcCCCc-hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHH
Q 044412 107 IAFYLYMLRAEVLLTTVHGQVWKNGFSSP-VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLA 185 (311)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a 185 (311)
+.+++...-. -.|+ ..+++.|-..|...|++++ |..++++ |
T Consensus 378 L~i~~~~lG~---------------~Hp~~a~~l~nLa~~~~~~G~~~e----A~~~~~~-------------------A 419 (490)
T 3n71_A 378 VDGYMKLYHH---------------NNAQLGMAVMRAGLTNWHAGHIEV----GHGMICK-------------------A 419 (490)
T ss_dssp HHHHHHHSCT---------------TCHHHHHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------H
T ss_pred HHHHHHHcCC---------------CCHHHHHHHHHHHHHHHHCCCHHH----HHHHHHH-------------------H
Confidence 7776665322 1333 5678999999999999999 6666665 4
Q ss_pred HHHHhhCC---CCcH-hHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 186 ELLFNKMP---AWDI-RSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 186 ~~~~~~m~---~~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
.++++... .|++ .+.+.+-.++...+.+++|+.+|.++++
T Consensus 420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 2333 3456666778888999999999999876
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.23 E-value=0.16 Score=43.42 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=137.4
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccC-ChhHHHHhcccCCCCCeeeeec-------cccC
Q 044412 29 IIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFH-FIDYTILVFPQMQEPNVFVYHA-------FSSL 100 (311)
Q Consensus 29 ~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~-------~~~~ 100 (311)
.+..++......+++..+.+.++...-. +..+|+.-=..+ ...| .+++++++++.+...+...|.+ +.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL-~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLL-TSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4455556666667788888888876422 334566655555 6667 5999999999987655555555 2222
Q ss_pred -C-ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCc--------cchHHHHHHhccCCCCC
Q 044412 101 -R-HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFF--------ESRRVSRRLFDEMPERK 170 (311)
Q Consensus 101 -~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~--------~a~~~a~~~~~~~~~~~ 170 (311)
+ ++++++++++.+.+.. +-|...|+.---.+.+.|.++ + +.+..+.+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d---------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~e----ELe~~~k~I~~- 196 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD---------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGS----ELDWCNEMLRV- 196 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC---------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHH----HHHHHHHHHHH-
T ss_pred cCCChHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhccccccchhhHHH----HHHHHHHHHHh-
Confidence 4 7889999999987642 456777777666666666666 4 22222221111
Q ss_pred HhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC-------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 044412 171 FATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ-------FREALDAFNKTKKSGTGSDQVTMATVLSACA 243 (311)
Q Consensus 171 ~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 243 (311)
...|...|+---..+.+.++ ++++++.+.+..... +-|...|+-+-..+.
T Consensus 197 ----------------------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 197 ----------------------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLK 253 (349)
T ss_dssp ----------------------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ----------------------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 12366677776666666665 688999998887742 235556665555455
Q ss_pred ccCChhh--HHHHHHhhC-----ChHHHHHHHhhcC---------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 244 HLGALDL--GRGIQIYCR-----SLGRSLLVFFKLR---------EKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 244 ~~~~~~~--a~~~~~~~~-----~~~~a~~~~~~~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+.|.... -..+.=..+ .......+..++. -+.......|.+.|...|+.++|.++++.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4443310 000000000 0001111111111 24566789999999999999999999999864
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.13 E-value=0.0059 Score=43.47 Aligned_cols=87 Identities=10% Similarity=-0.051 Sum_probs=63.1
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHH
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNT 176 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~ 176 (311)
+.+.|++++|+..|++..+.. +-+...|..+-.++...|++++ |...+++..+.
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~---------------P~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l------- 80 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE---------------PEREEAWRSLGLTQAENEKDGL----AIIALNHARML------- 80 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-------
T ss_pred HHHcCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh-------
Confidence 667888888888888876631 3357777888888889999999 55555442211
Q ss_pred HHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 177 MIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 177 li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
...+...|..+-..+...|++++|+..|++..+
T Consensus 81 ----------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 81 ----------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 012466777888888888999999999988775
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.10 E-value=0.082 Score=39.21 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhc-------CC---------CC-CHHHHHHHHHHHhccCChhhHHHHHHhhC
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKS-------GT---------GS-DQVTMATVLSACAHLGALDLGRGIQIYCR 259 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~ 259 (311)
...+...-..+.+.|++++|+..|.+..+. .- .| +...|..+-.+|.+.|+++.|...++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~-- 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE-- 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--
Confidence 445677778888999999999999997764 11 12 235788888888899998877665432
Q ss_pred ChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 260 ~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
|.++ ...+...|..+-.+|...|++++|...|++..+
T Consensus 89 ----al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 89 ----VLKR----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ----HHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHhc----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2221 123567899999999999999999999998765
No 177
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.10 E-value=0.063 Score=47.43 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=75.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC-
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKS---GTGSD----QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE- 273 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~- 273 (311)
..+..+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.+++ .+..++++...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~------~~L~i~~~~lg~ 365 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT------RTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH------HHHHHHHHHSCS
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH------HHHHhHHHHcCC
Confidence 3356677889999999999998753 24444 3589999999999999999988863 56666666553
Q ss_pred --CCc-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 274 --KNL-LCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 274 --p~~-~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
|++ .+++.|-..|...|++++|..++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333 579999999999999999999998865
No 178
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.10 E-value=0.05 Score=48.09 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=71.3
Q ss_pred hCCChhHHHHHHHHHHh---cCCCCC----HHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC---CCc-h
Q 044412 209 QNKQFREALDAFNKTKK---SGTGSD----QVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE---KNL-L 277 (311)
Q Consensus 209 ~~g~~~~a~~~~~~m~~---~g~~p~----~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~---p~~-~ 277 (311)
..|++++|+.++++..+ .-+.|+ ..|++.|..+|...|++++|+.+++ .+..++++... |++ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~------~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ------KIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHHSCSSCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH------HHHHHHHHHcCCCChHHHH
Confidence 35889999999998655 234444 3689999999999999999998873 56666666653 333 5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 278 CWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 278 ~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+++.|-..|...|++++|..++++..+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 799999999999999999999998653
No 179
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.06 E-value=0.28 Score=40.46 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=72.8
Q ss_pred HHHHHhhCC--CCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHhh
Q 044412 185 AELLFNKMP--AWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQ----VTMATVLSACAHLGALDLGRGIQIYC 258 (311)
Q Consensus 185 a~~~~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~a~~~~~~~~~a~~~~~~~ 258 (311)
|.++|+... .|+......+-..+.+.+++++|+..|+...+ .|+. ..+..+=.++...|++++|...++..
T Consensus 121 A~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 121 AMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp HHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788887775 35333555555678888999999999985543 2332 35666677788888888666555432
Q ss_pred CChHHHHHHHhhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 259 RSLGRSLLVFFKLREKN--LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 259 ~~~~~a~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
.... ..|. .......-.++.+.|+.++|..+|+++...
T Consensus 198 ~~g~---------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 198 NDSP---------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTST---------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCC---------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1000 0132 234566677888999999999999998864
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.98 E-value=0.13 Score=38.45 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC--------H-----HHHHHHHHHHhccCChhhHHHHHHhhCChHHHH
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSD--------Q-----VTMATVLSACAHLGALDLGRGIQIYCRSLGRSL 265 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------~-----~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~ 265 (311)
.+...-..+.+.|++++|++.|++-.+. .|+ . ..|..+-.++.+.|++++|...+ +.|.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~------~kAL 84 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA------DKAL 84 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH------HHHH
Confidence 3455566677889999999999998763 333 2 38888899999999999998766 4566
Q ss_pred HHHhhcC--CCC-chhH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 266 LVFFKLR--EKN-LLCW----NSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 266 ~~~~~~~--~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
++|++-. .|+ ...| ...-.++...|++++|...|++..+
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666554 343 4567 8888999999999999999998764
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.87 E-value=0.043 Score=47.45 Aligned_cols=125 Identities=4% Similarity=-0.053 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhh------------CCCCcHhHHHHHH
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNK------------MPAWDIRSWTTMI 204 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~------------m~~~~~~~y~~li 204 (311)
..+..+-..|.+.|++++ |...+++.. +++.. ....+...|+.+-
T Consensus 224 ~~~~~~g~~~~~~g~~~~----Ai~~y~kAl-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEM----AIKKYTKVL-------------------RYVEGSRAAAEDADGAKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHH----HHHHHHHHH-------------------HHHHHHHHHSCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHH----HHHHHHHHH-------------------HHhhcCccccChHHHHHHHHHHHHHHHHHH
Confidence 346677778889999999 555554411 11111 1112456888999
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSI 282 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~l 282 (311)
.+|.+.|++++|++.+++..+. .| +...|..+-.+|...|++++|...++. |.++ .| +...+..+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~------Al~l-----~P~~~~~~~~l 347 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKK------AQEI-----APEDKAIQAEL 347 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH-----CTTCHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHH------HHHh-----CCCCHHHHHHH
Confidence 9999999999999999999874 34 567888888999999999977665532 2222 24 45667777
Q ss_pred HHHHHhcCChHHHHH
Q 044412 283 TEALAIHGFAHEALG 297 (311)
Q Consensus 283 i~~~~~~g~~~~a~~ 297 (311)
-..+...++.+++.+
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.81 E-value=0.053 Score=48.26 Aligned_cols=134 Identities=8% Similarity=0.088 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCC-----------CCcHhHHHHHH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP-----------AWDIRSWTTMI 204 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~-----------~~~~~~y~~li 204 (311)
...|..+-..|.+.|++++ |...|++... +..... .-....|+.+-
T Consensus 268 a~~~~~~G~~~~~~g~~~~----A~~~y~~Al~-------------------~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQ----AVIQYGKIVS-------------------WLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHHHH-------------------HHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHH----HHHHHHHHHH-------------------HhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 4467777888999999999 5555544211 110000 00146788889
Q ss_pred HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHH
Q 044412 205 TSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITE 284 (311)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~ 284 (311)
.+|.+.|++++|+..|++..+.. +-+...|..+-.+|...|++++|...|+..-.++ ..+...+..+-.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----------P~~~~a~~~l~~ 393 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----------PQNKAARLQISM 393 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------------CHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------CCCHHHHHHHHH
Confidence 99999999999999999988753 3356778888888999898886666554322211 134567888888
Q ss_pred HHHhcCChHHHHH-HHHHHH
Q 044412 285 ALAIHGFAHEALG-MFDRMT 303 (311)
Q Consensus 285 ~~~~~g~~~~a~~-~~~~M~ 303 (311)
.+.+.|+.++|.. ++..|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8888888887754 566554
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.67 E-value=0.067 Score=45.51 Aligned_cols=145 Identities=10% Similarity=0.044 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhCCCCccchHHHHHHhccCCC--CCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 137 FVQTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 137 ~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
..+..+-..|.+.|++++ |...|+.... |+...+... .-+......+ ....|+.+-.+|.+.|+++
T Consensus 180 ~~~~~~g~~~~~~g~~~~----A~~~y~~Al~~~p~~~~~~~~-~~~~~~~~~l-------~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEE----AMQQYEMAIAYMGDDFMFQLY-GKYQDMALAV-------KNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHTCSSSCCHH----HHHHHHHHHHHSCHHHHHTCC-HHHHHHHHHH-------HTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHHhccchhhhhc-ccHHHHHHHH-------HHHHHHHHHHHHHHcCCHH
Confidence 346667778889999999 5555544221 111100000 0000000000 1137888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHH-HHhcCChH
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEA-LAIHGFAH 293 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~-~~~~g~~~ 293 (311)
+|+..+++..+.. +-+...|..+-.+|...|++++|...|+..-..+. .+...+..+-.. ....+..+
T Consensus 248 ~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p----------~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 248 EAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP----------DDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988742 23577888999999999999866665544332221 133445544444 23456677
Q ss_pred HHHHHHHHHHH
Q 044412 294 EALGMFDRMTY 304 (311)
Q Consensus 294 ~a~~~~~~M~~ 304 (311)
++..+|.+|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 78888888864
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.67 E-value=0.0083 Score=53.89 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=67.0
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK- 274 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p- 274 (311)
+...|..+-.+|.+.|++++|++.+++..+.. +-+...|..+-.+|...|++++|...++. |.++ .|
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~------al~~-----~p~ 106 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYET------VVKV-----KPH 106 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHH-----STT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh-----CCC
Confidence 57789999999999999999999999998752 23567888889999999999977766533 2221 23
Q ss_pred CchhHHHHHHH--HHhcCChHHHHHHHH
Q 044412 275 NLLCWNSITEA--LAIHGFAHEALGMFD 300 (311)
Q Consensus 275 ~~~~~~~li~~--~~~~g~~~~a~~~~~ 300 (311)
+...+..+-.+ +.+.|++++|...++
T Consensus 107 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 107 DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34455555555 888899999999887
No 185
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.59 E-value=0.68 Score=41.54 Aligned_cols=171 Identities=12% Similarity=0.014 Sum_probs=104.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH------HHHHHhhCC---
Q 044412 123 VHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL------AELLFNKMP--- 193 (311)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~------a~~~~~~m~--- 193 (311)
+++..+.. ++.+...|-..+.-+.+.|++++|..+..+.+.. +. +...|. .|+.. ...+.+...
T Consensus 201 ~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 201 IHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 44444443 3455778888888888999999977776666666 32 222221 11111 111221110
Q ss_pred -------C--CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHhccCChhhHHHHHHh-----
Q 044412 194 -------A--WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMA--TVLSACAHLGALDLGRGIQIY----- 257 (311)
Q Consensus 194 -------~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~a~~~~~~~~~a~~~~~~----- 257 (311)
. .....|-..+.-.-+.+.++.|..+|++....+ ++...|. +.+.... .++.+.|+.+|+.
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC
Confidence 0 012346666666656677888888888882222 2334443 3333222 3368888888876
Q ss_pred ----------------hCChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 258 ----------------CRSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 258 ----------------~~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.|+.+.|..+|+...+ ....|...+.--...|+.+.+..+++++..
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566778888888743 567788888887888999999998888764
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.57 E-value=0.16 Score=37.95 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=73.2
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc-------------hhHHHHHHHHHHhCCCCccchHHHHHHh
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP-------------VFVQTAMVDNYSYSNKFFESRRVSRRLF 163 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~a~~~~ 163 (311)
+.+.|++++|+..|+.-.+. .|+ ...|+.+-.++.+.|++++ |...+
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l----------------~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~e----Al~~~ 80 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEI----------------SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDE----ALHSA 80 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHH----------------HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHH----HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhh----------------CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHH----HHHHH
Confidence 34567888888888776542 222 2389999999999999999 55555
Q ss_pred ccCCCCCHhHHHHHHHHHHHHHHHHHhhCC--CC-cHhHH----HHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCC
Q 044412 164 DEMPERKFATWNTMIDAYARLAELLFNKMP--AW-DIRSW----TTMITSYSQNKQFREALDAFNKTKK-----SGTGSD 231 (311)
Q Consensus 164 ~~~~~~~~~~~~~li~~~~~~a~~~~~~m~--~~-~~~~y----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~ 231 (311)
+. |.++|++-. .| +...| ...-.++...|++++|+..|++-.+ .|+.+.
T Consensus 81 ~k-------------------AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 81 DK-------------------ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HH-------------------HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HH-------------------HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 54 334443322 23 45677 8888999999999999999999764 466666
Q ss_pred HHHHHHHHH
Q 044412 232 QVTMATVLS 240 (311)
Q Consensus 232 ~~t~~~li~ 240 (311)
.......+.
T Consensus 142 ~~~~~~~~~ 150 (159)
T 2hr2_A 142 KERMMEVAI 150 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.47 E-value=0.22 Score=41.09 Aligned_cols=115 Identities=9% Similarity=-0.011 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCC--CCHhHHHHHHHHHHHH-----HHHHHhhCCC-Cc----HhHHHHHHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPE--RKFATWNTMIDAYARL-----AELLFNKMPA-WD----IRSWTTMITS 206 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~~~li~~~~~~-----a~~~~~~m~~-~~----~~~y~~li~~ 206 (311)
+-.+..++...|++++ |.++|+.... |+....-.+-..+.+. +...|+.... |+ ...+..+=.+
T Consensus 105 ~LayA~~L~~~g~y~e----A~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYAD----AMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHH----HHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHH----HHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 3446677888999999 8889988865 3332221111122222 8888875543 22 2356677788
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSD--QVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+...|++++|++.|++-......|. .......-.++.+.|+.++|..+|+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999875444365 23455556667888999988887766
No 188
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.44 E-value=0.043 Score=52.25 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHhccCChhhHHHHHHhhCChHHHHHHHhhc
Q 044412 238 VLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271 (311)
Q Consensus 238 li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~ 271 (311)
...++.+.|++++|.+++..+++.++|..+-+..
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3344555566666666666666666665554443
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.42 E-value=0.091 Score=46.75 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHhccCChhhHHHHHHhhCC
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD----------------QVTMATVLSACAHLGALDLGRGIQIYCRS 260 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~t~~~li~a~~~~~~~~~a~~~~~~~~~ 260 (311)
...|..+-..|.+.|++++|+..|++..+. .|+ ...|..+-.+|.+.|+++.|...++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~--- 342 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK--- 342 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---
Confidence 456778888899999999999999998773 233 57888888999999999977666533
Q ss_pred hHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 261 LGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 261 ~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
|.++ ...+...|..+-.+|...|++++|...|++..+
T Consensus 343 ---al~~----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 343 ---ALGL----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp ---HHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---HHhc----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2221 123677899999999999999999999999875
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0098 Score=40.83 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=47.2
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
+...|..+-..+...|++++|++.|++..+.. +.+...+..+-.++...|++++|...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45677788888999999999999999988752 336778888888899999988666554
No 191
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.38 E-value=0.093 Score=46.36 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCC---CCcH-hHHHHHHHHHHhCC
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP---AWDI-RSWTTMITSYSQNK 211 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~---~~~~-~~y~~li~~~~~~g 211 (311)
..+++.|..+|...|++++ |..++++ +.++++..- .|++ .+|+.|-..|...|
T Consensus 340 a~~~~nLa~~y~~~g~~~e----A~~~~~~-------------------aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg 396 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEG----ALKYGQK-------------------IIKPYSKHYPVYSLNVASMWLKLGRLYMGLE 396 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCHHH----HHHHHHH-------------------HHHHHHHHcCCCChHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999 6666555 333343332 3443 47999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 044412 212 QFREALDAFNKTKK 225 (311)
Q Consensus 212 ~~~~a~~~~~~m~~ 225 (311)
++++|+.++++-.+
T Consensus 397 ~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 397 NKAAGEKALKKAIA 410 (433)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998654
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.38 E-value=0.093 Score=38.89 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhC--------------CCCcHhHHH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM--------------PAWDIRSWT 201 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m--------------~~~~~~~y~ 201 (311)
...+...-..+.+.|++++ |...|... .+++... ...+...|.
T Consensus 11 a~~~~~~G~~~~~~~~~~~----A~~~y~~a-------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKE----AIDAYRDA-------------------LTRLDTLILREKPGEPEWVELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHH----HHHHHHHH-------------------HHHHHHHHHTSCTTSHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHH-------------------HHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence 3455666778899999999 55555441 1111110 012346788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
.+-.+|.+.|++++|+..+++..+.. +-+...|..+-.++...|+++.|...+..
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 88999999999999999999988753 33567888888999999999977766543
No 193
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.26 E-value=0.16 Score=48.30 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhh
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKSG-------TGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFK 270 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~ 270 (311)
..|..+-..+.+.|+++.|.+.|..+.... ..-+..-...+.......|+.+.|..++.++|++++|.+++.+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555555555555555555555443210 0224444555666677788888888888888888888776655
Q ss_pred cCC
Q 044412 271 LRE 273 (311)
Q Consensus 271 ~~~ 273 (311)
+.+
T Consensus 762 ~~~ 764 (814)
T 3mkq_A 762 SQR 764 (814)
T ss_dssp TTC
T ss_pred cCC
Confidence 553
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.11 E-value=0.096 Score=45.22 Aligned_cols=98 Identities=5% Similarity=-0.007 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhc--------------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHhhCChH
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKS--------------GTGS-DQVTMATVLSACAHLGALDLGRGIQIYCRSLG 262 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p-~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~ 262 (311)
..|..+-..+.+.|++++|++.|++..+. ...| +...|..+-.+|.+.|++++|...++..-..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 35777788889999999999999988751 0223 3467888888888999998776654332111
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 263 ~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
...+...|..+-.+|...|++++|...|++..+.
T Consensus 303 ---------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 ---------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1235678899999999999999999999998753
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.07 E-value=0.088 Score=36.42 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=48.0
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.+...|..+-..|...|++++|+..|++..+.. +.+...|..+-.++...|+.++|...++
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 366788888888999999999999999988753 2346678888888888888887776653
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.043 Score=37.44 Aligned_cols=88 Identities=8% Similarity=0.067 Sum_probs=60.7
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+-..+.+.|++++ |...++..... ...+...|..+-.++...|+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~ 55 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYRE----AVHCYDQLITA-----------------------QPQNPVGYSNKAMALIKLGEYT 55 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHHhcCHH
Confidence 45677778889999999999 55555442110 1225677888899999999999
Q ss_pred HHHHHHHHHHhcCCCCC-------HHHHHHHHHHHhccCChhhH
Q 044412 215 EALDAFNKTKKSGTGSD-------QVTMATVLSACAHLGALDLG 251 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~-------~~t~~~li~a~~~~~~~~~a 251 (311)
+|++.|++..+. .|+ ...+..+-.++...|+.+.|
T Consensus 56 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 56 QAIQMCQQGLRY--TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHTS--CSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHh--CCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 999999998864 455 34445555555555555433
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.06 E-value=0.17 Score=32.77 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=47.8
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
+...|..+-..+...|++++|+..|++..+.. +.+...+..+-.++...|++++|...++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35577788888999999999999999988753 3356778888888999999987766653
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.84 E-value=0.064 Score=37.14 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
++|++.|++..+. -+.+...+..+-..|...|++++ |...++.....
T Consensus 2 ~~a~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~-------------- 48 (115)
T 2kat_A 2 QAITERLEAMLAQ---------------GTDNMLLRFTLGKTYAEHEQFDA----ALPHLRAALDF-------------- 48 (115)
T ss_dssp CCHHHHHHHHHTT---------------TCCCHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHccCHHH----HHHHHHHHHHH--------------
Confidence 3566777776553 23457788889999999999999 55555442210
Q ss_pred HHHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 184 LAELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 184 ~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
...+...|..+-..|...|++++|...|++..+
T Consensus 49 ---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 49 ---------DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112466788889999999999999999999875
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.75 E-value=0.16 Score=34.23 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=50.7
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+...|..+-..|...|++++|+..|++..+.. +-+...|..+-.+|...|++++|...++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56778888999999999999999999998753 22466888899999999999988776644
No 200
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.74 E-value=0.24 Score=35.83 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=78.5
Q ss_pred CcHhHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhccCC----hhhHHHHHHhhCChHHHHHHHh
Q 044412 195 WDIRSWTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQVTMATVLSACAHLGA----LDLGRGIQIYCRSLGRSLLVFF 269 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~a~~~~~~----~~~a~~~~~~~~~~~~a~~~~~ 269 (311)
.+..-||-+|=.....-+.+-.+++++..-+- .+.|. .-...++++|.+.+. ++.|...+-..|+.+.-.++..
T Consensus 37 sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~ 115 (172)
T 1wy6_A 37 STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGR 115 (172)
T ss_dssp SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHH
Confidence 34556666666666666677666666665431 11111 123456666666553 4556666666777778888888
Q ss_pred hc-C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044412 270 KL-R--EKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVR 308 (311)
Q Consensus 270 ~~-~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 308 (311)
++ . +|++...-.+-.||.+-|+..+|.+++.+.-+.|++
T Consensus 116 ~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 116 EILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 84 3 677888888999999999999999999999999874
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.63 E-value=0.081 Score=44.97 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH------------------HHHHHHHHHhccCChhhHHHHHHhh
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQV------------------TMATVLSACAHLGALDLGRGIQIYC 258 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------------t~~~li~a~~~~~~~~~a~~~~~~~ 258 (311)
...|..+-..+.+.|++++|+..|.+..+. .|+.. .|..+-.++.+.|+++.|...++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~- 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI- 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 345666777778889999999999997763 35543 677888888888988877665532
Q ss_pred CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 259 ~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+.++ ...+...|..+-.+|...|++++|...|++..+
T Consensus 256 -----al~~----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 256 -----VLTE----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp -----HHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred -----HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2221 123677899999999999999999999998754
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.96 E-value=0.17 Score=36.63 Aligned_cols=89 Identities=4% Similarity=-0.143 Sum_probs=60.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHhhCChHHHHHHHhhcC-CCCch
Q 044412 203 MITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH----LGALDLGRGIQIYCRSLGRSLLVFFKLR-EKNLL 277 (311)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~----~~~~~~a~~~~~~~~~~~~a~~~~~~~~-~p~~~ 277 (311)
|-..|...+.+++|++.|++-.+.| +...+..|=..|.. .++.++|...++. -. .-+..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~-------------Aa~~g~~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSK-------------ACGLNDQD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-------------HHHTTCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH-------------HHcCCCHH
Confidence 4445555567778888888877764 44555555555555 5666655555433 22 24566
Q ss_pred hHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 044412 278 CWNSITEALAI----HGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 278 ~~~~li~~~~~----~g~~~~a~~~~~~M~~~g~ 307 (311)
.+..|-..|.. .++.++|..+|++-.+.|.
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77778888888 8999999999999887764
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.89 E-value=0.14 Score=45.17 Aligned_cols=78 Identities=8% Similarity=-0.091 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCC---CCc-HhHHHHHHHHHHhCC
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMP---AWD-IRSWTTMITSYSQNK 211 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~---~~~-~~~y~~li~~~~~~g 211 (311)
..+++.|...|...|++++ |..++++ +..+++..- .|+ ..+++.|-..|...|
T Consensus 329 ~~~~~~L~~~y~~~g~~~e----A~~~~~~-------------------~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g 385 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEE----ALFYGTR-------------------TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQG 385 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHH----HHHHHHH-------------------HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHH----HHHHHHH-------------------HHHhHHHHcCCCChHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999 5555544 233333322 244 357999999999999
Q ss_pred ChhHHHHHHHHHHh---cCCCCCHHHHH
Q 044412 212 QFREALDAFNKTKK---SGTGSDQVTMA 236 (311)
Q Consensus 212 ~~~~a~~~~~~m~~---~g~~p~~~t~~ 236 (311)
++++|+.++++-.+ .-..||.....
T Consensus 386 ~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 386 MFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999998653 22445544333
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.77 E-value=0.22 Score=33.52 Aligned_cols=63 Identities=5% Similarity=-0.044 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 231 DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREK-NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 231 ~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
+...+..+-.++...|++++|...|+.. .+. .| +...|..+-.+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEEL------VET-----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567788888888989998666655321 111 24 567899999999999999999999988653
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.58 E-value=0.8 Score=41.08 Aligned_cols=172 Identities=10% Similarity=0.014 Sum_probs=90.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCC-hhHHHHhcccCC------CCCe---eeeec-
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHF-IDYTILVFPQMQ------EPNV---FVYHA- 96 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~-~~~a~~~~~~m~------~~~~---~~~~~- 96 (311)
..++..+...|....++.+++..++. +.+...+...... .+.+. ++...+.+.... .+.. ..|-.
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~--~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV--MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH--TTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh--cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 34556667778888889999999988 4444444332221 11111 111111110000 0000 11111
Q ss_pred ---cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHH--HHHHHHHhCCCCccchHHHHHHhccCCC--C
Q 044412 97 ---FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQT--AMVDNYSYSNKFFESRRVSRRLFDEMPE--R 169 (311)
Q Consensus 97 ---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~a~~~~~~~~~--~ 169 (311)
..+.+..+.|..+|+.. +. ...+..+|- +.+.... .++.+. |+.+|+.+.+ |
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~---------------~~~~~~v~i~~A~lE~~~-~~d~~~----ar~ife~al~~~~ 351 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GN---------------EGVGPHVFIYCAFIEYYA-TGSRAT----PYNIFSSGLLKHP 351 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TT---------------SCCCHHHHHHHHHHHHHH-HCCSHH----HHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHh-hC---------------CCCChHHHHHHHHHHHHH-CCChHH----HHHHHHHHHHHCC
Confidence 33466789999999887 21 112333443 3333333 236888 5555554322 2
Q ss_pred C-HhHHHHHHHHHHHH-----HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044412 170 K-FATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKK 225 (311)
Q Consensus 170 ~-~~~~~~li~~~~~~-----a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 225 (311)
+ ...|...+.-..+. |+.+|++.. .....|...++-=...|+.+.+.+++++..+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 22233333322222 788888874 3567788888766677888888888888764
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.51 E-value=0.26 Score=31.86 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...+..+-..|...|++++ |...++..... ...+...|..+-..+...|+++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~ 60 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDE----AIEYYQKALEL-----------------------DPNNAEAWYNLGNAYYKQGDYD 60 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHccCHHH----HHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHHHhhHH
Confidence 35677778888999999999 55555442110 1125667888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACA 243 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 243 (311)
+|...|++..+.. +-+...+..+-.++.
T Consensus 61 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 61 EAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 9999999988742 223445555444443
No 207
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.7 Score=35.08 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCC-----------CC
Q 044412 207 YSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE-----------KN 275 (311)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~-----------p~ 275 (311)
-...|+++.|.++.+++ -+...|..|-......|+++.|+..|...++.+...-++..... -.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34569999999998876 36788999999999999999999999998888876444322210 01
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHH
Q 044412 276 LLCWNSITEALAIHGFAHEALGMFDR 301 (311)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~a~~~~~~ 301 (311)
..-+|.-...+.-.|+++++.++|.+
T Consensus 89 ~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 89 REDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12355666666677777777777654
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=92.21 E-value=1.5 Score=36.54 Aligned_cols=182 Identities=5% Similarity=-0.027 Sum_probs=107.6
Q ss_pred hccCChhHHHHhcccCCC--CCe-eeeec----cccCC--ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHH
Q 044412 71 SRFHFIDYTILVFPQMQE--PNV-FVYHA----FSSLR--HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTA 141 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~--~~~-~~~~~----~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ 141 (311)
.+....++|+++++.+.. |+. ..|+. +...+ ++++++++++.+.... +-+..+|+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---------------Pk~y~aW~~ 108 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---------------EKNYQIWNY 108 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---------------TTCCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---------------cccHHHHHH
Confidence 333445677777777653 332 23444 44455 8999999999987642 345666666
Q ss_pred HHHHH----HhC---CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 142 MVDNY----SYS---NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 142 ll~~~----~~~---g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
--..+ .+. ++++++..+...+++. + ..|...|+----.+.+.|.++
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----~-----------------------pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSS----D-----------------------PKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----C-----------------------TTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHh----C-----------------------CCCHHHHHHHHHHHHHhcccC
Confidence 55555 555 6777833333333332 1 246777877777777788888
Q ss_pred --HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC---CCCchhHHHHHHHHHhc
Q 044412 215 --EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR---EKNLLCWNSITEALAIH 289 (311)
Q Consensus 215 --~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~---~p~~~~~~~li~~~~~~ 289 (311)
++++.++++.+... -|...|+---..+.+.+.... .. ..+++.+.+++.. ..|...|+.+-..+.+.
T Consensus 162 ~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~-~~------~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 162 DAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT-DN------TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF 233 (306)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC-HH------HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch-hh------hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 99999999998643 355566544444444443100 00 0224444444333 34677888888888888
Q ss_pred CChHH-HHHHHHHH
Q 044412 290 GFAHE-ALGMFDRM 302 (311)
Q Consensus 290 g~~~~-a~~~~~~M 302 (311)
|+..+ +.....+.
T Consensus 234 ~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 234 DRSITQLEEFSLQF 247 (306)
T ss_dssp TCCGGGGHHHHHTT
T ss_pred CCChHHHHHHHHHH
Confidence 87444 34444443
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=91.76 E-value=2.1 Score=36.17 Aligned_cols=212 Identities=15% Similarity=0.077 Sum_probs=110.7
Q ss_pred ccCChh-HHHHhcccCCCCCeeeeec-------cccCCC----------hhHHHHHHHHHHHCCCCchHHHHHHHHhcCC
Q 044412 72 RFHFID-YTILVFPQMQEPNVFVYHA-------FSSLRH----------PLQAIAFYLYMLRAEVLLTTVHGQVWKNGFS 133 (311)
Q Consensus 72 ~~g~~~-~a~~~~~~m~~~~~~~~~~-------~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~ 133 (311)
+.|.++ +|+++++.+..-|...|.+ +...+. +++++.+++.+... .+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---------------~P 105 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------------NP 105 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---------------CC
Confidence 344444 6777777766544333333 111111 56777777777654 35
Q ss_pred CchhHHHHHHHHHHhCCC--CccchHHHHHHhccCCCCCHhHHHHHHHHHHH------HHHHHHhhCC---CCcHhHHHH
Q 044412 134 SPVFVQTAMVDNYSYSNK--FFESRRVSRRLFDEMPERKFATWNTMIDAYAR------LAELLFNKMP---AWDIRSWTT 202 (311)
Q Consensus 134 ~~~~~~~~ll~~~~~~g~--~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~------~a~~~~~~m~---~~~~~~y~~ 202 (311)
-+..+|+.---.+.+.|+ ++++..+...+++. ...|...|+.---.+.. .+.+.++.+. ..|...|+.
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 578888888888888885 67844444444432 12344444432222211 1333333332 236666776
Q ss_pred HHHHHHhC--------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHhhCChHHHHHH
Q 044412 203 MITSYSQN--------------KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL-GALDLGRGIQIYCRSLGRSLLV 267 (311)
Q Consensus 203 li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~-~~~~~a~~~~~~~~~~~~a~~~ 267 (311)
.-..+.+. +.++++++.+....... +-|...|+-+-..+.+. |.-+.. -+..+.++++.+.
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~---~~~~~~l~~el~~ 260 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS---VEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc---hHHHHHHHHHHHH
Confidence 65555554 34677888888777632 22444555333333332 111000 0012334566666
Q ss_pred HhhcC--CCCchhHHHHHHHH-----HhcCChHHHHHHHHHHHH
Q 044412 268 FFKLR--EKNLLCWNSITEAL-----AIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 268 ~~~~~--~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~M~~ 304 (311)
++++. .||. .|+.+-.+. -..|..+++..+++++++
T Consensus 261 ~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 261 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 66665 6765 454332222 245777788888888764
No 210
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.71 E-value=4.3 Score=30.70 Aligned_cols=89 Identities=7% Similarity=-0.017 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh
Q 044412 135 PVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR 214 (311)
Q Consensus 135 ~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~ 214 (311)
+...|..|-+...+.|+++- |++.|..... |..+.--|...|+.+
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~l----Ae~cy~~~~D-------------------------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASL----AEMIYQTQHS-------------------------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHH----HHHHHHHTTC-------------------------------HHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHcCChHH----HHHHHHHhCC-------------------------------HHHHHHHHHHhCCHH
Confidence 34566666666666666666 6666555332 222233333345554
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHH
Q 044412 215 EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRS 264 (311)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a 264 (311)
+-.++-+.-...| -++.-..++.-.|+++++.+++...|+..+|
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA 121 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA 121 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH
Confidence 4443333322222 2344455555666777776666666666665
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.63 E-value=0.6 Score=34.79 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=65.9
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CCC-chhHHHHHH
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EKN-LLCWNSITE 284 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p~-~~~~~~li~ 284 (311)
.+.+.+++|+..+++-.+.. +-+...|..+=.++...++++.+.... +..++|...|++-. .|+ ...|+.+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al---~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK---QMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH---HHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH---hHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45567899999999887743 335667776777777777665444332 23556666666655 454 568999999
Q ss_pred HHHhcC-----------ChHHHHHHHHHHHH
Q 044412 285 ALAIHG-----------FAHEALGMFDRMTY 304 (311)
Q Consensus 285 ~~~~~g-----------~~~~a~~~~~~M~~ 304 (311)
+|...| ++++|...|++..+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 998774 89999999999876
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.46 E-value=2.3 Score=30.41 Aligned_cols=106 Identities=10% Similarity=-0.065 Sum_probs=70.3
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
++.++|+++|+.-.+.| .|+.. |-..|...+.+++ |...|+...+.
T Consensus 9 ~d~~~A~~~~~~aa~~g---------------~~~a~----lg~~y~~g~~~~~----A~~~~~~Aa~~----------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---------------EMFGC----LSLVSNSQINKQK----LFQYLSKACEL----------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---------------CTTHH----HHHHTCTTSCHHH----HHHHHHHHHHT-----------
T ss_pred cCHHHHHHHHHHHHcCC---------------CHhhh----HHHHHHcCCCHHH----HHHHHHHHHcC-----------
Confidence 36788888888876654 33333 4455556566666 55555542221
Q ss_pred HHHHHHHHHhhCCCCcHhHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChhhHH
Q 044412 181 YARLAELLFNKMPAWDIRSWTTMITSYSQ----NKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH----LGALDLGR 252 (311)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~----~~~~~~a~ 252 (311)
-+...++.|-..|.. .+++++|++.|++-.+.| +...+..|-..|.. .++.++|.
T Consensus 55 --------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 117 (138)
T 1klx_A 55 --------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAV 117 (138)
T ss_dssp --------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred --------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 245666667777777 789999999999988875 45566666666666 67888777
Q ss_pred HHHHh
Q 044412 253 GIQIY 257 (311)
Q Consensus 253 ~~~~~ 257 (311)
..++.
T Consensus 118 ~~~~~ 122 (138)
T 1klx_A 118 KTFEK 122 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=90.20 E-value=3.5 Score=35.05 Aligned_cols=173 Identities=11% Similarity=0.050 Sum_probs=102.3
Q ss_pred hccCChhHHHHhcccCCC--CC-eeeeec----cccCC-ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHH
Q 044412 71 SRFHFIDYTILVFPQMQE--PN-VFVYHA----FSSLR-HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAM 142 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~m~~--~~-~~~~~~----~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~l 142 (311)
.+....++|+++++.+.. |+ ...|+. +...+ .+++++++++.+... .+-+..+|+.-
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---------------nPKny~aW~hR 129 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---------------NLKSYQVWHHR 129 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT---------------TCCCHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---------------CCCcHHHHHHH
Confidence 445556678888877754 22 233443 44445 589999999998765 25567788887
Q ss_pred HHHHHhC-C-CCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh------
Q 044412 143 VDNYSYS-N-KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR------ 214 (311)
Q Consensus 143 l~~~~~~-g-~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~------ 214 (311)
-..+.+. + +.++ +..+++.+.+.+ ..|...|+----.+.+.|..+
T Consensus 130 ~wlL~~l~~~~~~~----EL~~~~k~L~~d-----------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 130 LLLLDRISPQDPVS----EIEYIHGSLLPD-----------------------PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHCCSCCHH----HHHHHHHHTSSC-----------------------TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHhcCCChHH----HHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHhccccccchhh
Confidence 7777776 6 7777 455555444332 235555554444444444444
Q ss_pred --HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC--CC-CchhHHHHHHHHHhc
Q 044412 215 --EALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR--EK-NLLCWNSITEALAIH 289 (311)
Q Consensus 215 --~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~--~p-~~~~~~~li~~~~~~ 289 (311)
++++.++++.+.. .-|...|+-.-..+.+.+.......+ .+++.+.+++.. .| |...|+.+-..+.+.
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~------~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS------LQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999998864 33666777766666666642111111 123444443332 34 567787776666666
Q ss_pred CCh
Q 044412 290 GFA 292 (311)
Q Consensus 290 g~~ 292 (311)
|+.
T Consensus 256 ~~~ 258 (349)
T 3q7a_A 256 SLP 258 (349)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.74 E-value=1.1 Score=29.36 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=38.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC-CHH-HHHHHHHHHhccCChhhHHHHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGS-DQV-TMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~-t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
...+...|++++|++.|++..+. .| +.. .+..+-.++...|++++|...++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44567789999999999998875 34 456 77778888888888887766553
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.60 E-value=0.47 Score=35.36 Aligned_cols=105 Identities=11% Similarity=-0.029 Sum_probs=69.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHH------HHHHhccCCCCCHh
Q 044412 99 SLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRV------SRRLFDEMPERKFA 172 (311)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~------a~~~~~~~~~~~~~ 172 (311)
+.+.+++|++.++.-.+.. +-+...|+.+-.++...|+++.+.+. |...|++..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~---------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---- 74 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN---------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---- 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHhHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----
Confidence 4456788888887766532 44678888888888888887642210 3333332211
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhC-----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044412 173 TWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQN-----------KQFREALDAFNKTKKSGTGSDQVTMATVLS 240 (311)
Q Consensus 173 ~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 240 (311)
+ .| +...|+.+-.+|... |++++|++.|++-.+ +.|+...|...+.
T Consensus 75 -------------------l-dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 75 -------------------I-DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp -------------------H-CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred -------------------h-CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 0 23 456777777787766 489999999999887 5788888776666
Q ss_pred HHhc
Q 044412 241 ACAH 244 (311)
Q Consensus 241 a~~~ 244 (311)
..-+
T Consensus 133 ~~~k 136 (158)
T 1zu2_A 133 MTAK 136 (158)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5544
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.25 E-value=2.2 Score=31.45 Aligned_cols=81 Identities=11% Similarity=-0.073 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHhhCChHHHHHHHhhcCCC--CchhHHHHHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLG---ALDLGRGIQIYCRSLGRSLLVFFKLREK--NLLCWNSITEALA 287 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~---~~~~a~~~~~~~~~~~~a~~~~~~~~~p--~~~~~~~li~~~~ 287 (311)
+..+.+-|.+-.+.|- ++..+--.+--++++.+ +.+++..+++. +++.- .| +...+-.|--+|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~---------ll~~~-~p~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEE---------LLPKG-SKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHH---------HHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------HHhcC-CccchHHHHHHHHHHHH
Confidence 3455555555555443 56666555555666666 33444433322 11110 12 1233444555668
Q ss_pred hcCChHHHHHHHHHHHH
Q 044412 288 IHGFAHEALGMFDRMTY 304 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~ 304 (311)
+.|++++|.++++...+
T Consensus 83 kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HTSCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHh
Confidence 88888888888887765
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=87.86 E-value=5.2 Score=36.49 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHhccCcc-hhHHHHHHHHHhhccCC----------hhHHHHhcccCCCCCeeeeec-------cccCC
Q 044412 40 IKELECVYATIVKTNANLD-CFLAKQFISFCTSRFHF----------IDYTILVFPQMQEPNVFVYHA-------FSSLR 101 (311)
Q Consensus 40 ~~~~~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~-------~~~~~ 101 (311)
.+++...++.++... |+ ..+|+.-=.++ .+.|+ ++++.+.++.+.+.+...|.+ +.+.+
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l-~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVL-QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHH-HhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 344466666666653 33 34444433333 44444 777777777765433333333 44445
Q ss_pred --ChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCC-CCccchHHHHHHhccCCCCCHhHHHHHH
Q 044412 102 --HPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSN-KFFESRRVSRRLFDEMPERKFATWNTMI 178 (311)
Q Consensus 102 --~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~a~~~~~~~~~~~~~~~~~li 178 (311)
+++++++.++.+.+.. +-+...|+.--..+.+.| ..++ +.+.++.+.+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d---------------~~N~~aW~~R~~~l~~l~~~~~~----el~~~~~~I~~~p------- 175 (567)
T 1dce_A 122 EPNWARELELCARFLEAD---------------ERNFHCWDYRRFVAAQAAVAPAE----ELAFTDSLITRNF------- 175 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTCCCHHH----HHHHHHTTTTTTC-------
T ss_pred cccHHHHHHHHHHHHhhc---------------cccccHHHHHHHHHHHcCCChHH----HHHHHHHHHHHCC-------
Confidence 5688888888876642 456677777666677777 6666 6666565554321
Q ss_pred HHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhC--------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 179 DAYARLAELLFNKMPAWDIRSWTTMITSYSQN--------------KQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
.|...|+..-..+.+. +.++++++.+.+..... +-|...|.-+-..+.+
T Consensus 176 ----------------~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 176 ----------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGR 238 (567)
T ss_dssp ----------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSC
T ss_pred ----------------CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhc
Confidence 2445555555444442 45789999998877642 2356667776666666
Q ss_pred cCChh
Q 044412 245 LGALD 249 (311)
Q Consensus 245 ~~~~~ 249 (311)
.+..+
T Consensus 239 ~~~~~ 243 (567)
T 1dce_A 239 AEPHD 243 (567)
T ss_dssp CCCCS
T ss_pred CCCcc
Confidence 66543
No 218
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.78 E-value=1.6 Score=29.44 Aligned_cols=76 Identities=9% Similarity=-0.136 Sum_probs=59.3
Q ss_pred ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec--cccCCChhHHHHHHHHHHHC
Q 044412 39 SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 39 ~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~~ 116 (311)
+.+++..|-+.+...|- -..++.- =+..+ .+.|++++|+.+.+.+.-||+.+|-+ -.+.|..+++...+.++...
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lI-R~sSL-mNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLI-RISSL-ANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHH-HHHHH-HHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHH-HHHHH-HcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 66777888888887765 2222222 23344 78999999999999999999999998 57889999999888888877
Q ss_pred C
Q 044412 117 E 117 (311)
Q Consensus 117 ~ 117 (311)
|
T Consensus 98 g 98 (115)
T 2uwj_G 98 S 98 (115)
T ss_dssp S
T ss_pred C
Confidence 6
No 219
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.31 E-value=6.4 Score=39.29 Aligned_cols=212 Identities=7% Similarity=0.011 Sum_probs=124.8
Q ss_pred HHHHHHHhhccCChhHHHHhcccCCCCCeeeeec---cccCCChhHHHHHHHHHHHCCCCch-------HHHHHHHHhcC
Q 044412 63 KQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA---FSSLRHPLQAIAFYLYMLRAEVLLT-------TVHGQVWKNGF 132 (311)
Q Consensus 63 ~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~~~~p~-------~~~~~~~~~g~ 132 (311)
..++..+ .+.+..+.+.++....++....+|-. +...|++++|.+.|++-. .|+..+ .-...+.....
T Consensus 816 ~~l~~~l-~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKL-FLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHH-HHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHH-HHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccccccc
Confidence 3455556 67777777777666555433333322 777888999988887642 222221 11111111111
Q ss_pred --CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCc--HhHHHHHHHHHH
Q 044412 133 --SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWD--IRSWTTMITSYS 208 (311)
Q Consensus 133 --~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~--~~~y~~li~~~~ 208 (311)
..-..=|..++..|-+.|..+.+.++|....+.....+ ++ ...|..+.+++.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~------------------------~~~~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD------------------------EDLSIAITHETLKTAC 949 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC------------------------HHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC------------------------hhhHHHHHHHHHHHHH
Confidence 11123477888888888888887777666655433221 12 235889999999
Q ss_pred hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcC------CCCchhHHHH
Q 044412 209 QNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLR------EKNLLCWNSI 282 (311)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~------~p~~~~~~~l 282 (311)
..|++++|...+..+.....+ ......||...|..|.++.-.. |...|..++-.+++..-- ...+.=|..|
T Consensus 950 ~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~-lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iL 1026 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLN-YSMPTLRQDVDNLLERKAFQMINVESQPCWYNIL 1026 (1139)
T ss_dssp HHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHH-HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHH
T ss_pred hhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhC-CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHh
Confidence 999999999999988765444 4567788888888887765443 222444444444443211 1111224444
Q ss_pred HHHHHhcCChHHHHH-HHHHHH
Q 044412 283 TEALAIHGFAHEALG-MFDRMT 303 (311)
Q Consensus 283 i~~~~~~g~~~~a~~-~~~~M~ 303 (311)
=.=+..+|++..|-. +|+...
T Consensus 1027 Ys~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1027 FSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHH
T ss_pred HhhhhccCChHHHHHHHHHHHH
Confidence 444557777766544 566654
No 220
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.17 E-value=2.4 Score=36.67 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC-cHhHHHHHHHHHHhCCChhHHH
Q 044412 139 QTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW-DIRSWTTMITSYSQNKQFREAL 217 (311)
Q Consensus 139 ~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~-~~~~y~~li~~~~~~g~~~~a~ 217 (311)
...++.++...|+.+++...+..+... +| +...|-.+|.++.+.|+..+|+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~----------------------------~P~~E~~~~~lm~al~~~Gr~~~Al 225 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE----------------------------HPYREPLWTQLITAYYLSDRQSDAL 225 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344566677778877744444444332 23 6778999999999999999999
Q ss_pred HHHHHHHh-----cCCCCCHHHHH
Q 044412 218 DAFNKTKK-----SGTGSDQVTMA 236 (311)
Q Consensus 218 ~~~~~m~~-----~g~~p~~~t~~ 236 (311)
+.|++..+ -|+.|...+-.
T Consensus 226 ~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 226 GAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999754 49999987743
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.93 E-value=6.7 Score=26.26 Aligned_cols=76 Identities=7% Similarity=-0.034 Sum_probs=54.3
Q ss_pred CchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhC---CCCcHhHHHHHHHHHHhC
Q 044412 134 SPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKM---PAWDIRSWTTMITSYSQN 210 (311)
Q Consensus 134 ~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m---~~~~~~~y~~li~~~~~~ 210 (311)
.+...+-.|-..+.+.|+++. |...++. |.+.+..- ..+....|..+-.++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~----A~~W~~~-------------------Al~~~~~~~~~~~~~~~i~~~L~~~~~~~ 59 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYH----TELWMEQ-------------------ALRQLDEGEISTIDKVSVLDYLSYAVYQQ 59 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH----HHHHHHH-------------------HHHHHHTTCCCSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccchHH----HHHHHHH-------------------HHHhhhccCCCcccHHHHHHHHHHHHHHc
Confidence 455566778888889999999 6666554 22333211 123566788999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHH
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVT 234 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t 234 (311)
|++++|+.++++..+ +.|+...
T Consensus 60 g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 60 GDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHH
T ss_pred cCHHHHHHHHHHHHh--cCCCCHH
Confidence 999999999999987 4676543
No 222
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.62 E-value=1.4 Score=29.93 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=44.1
Q ss_pred HHHHHhhcc-ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 30 IANQLKKCS-SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 30 ~~~~l~~~~-~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
|..-+..-. +.=++++-.+.+....+.|++.+..+.+++| .|..++..|.++|+-++
T Consensus 15 y~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAc-RRvND~alAVR~lE~iK 72 (109)
T 1v54_E 15 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRAC-RRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 344443333 3445577777778888999999999999999 99999999999987764
No 223
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.32 E-value=1.7 Score=29.35 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec--cccCCChhHHHHHHHHHHHC
Q 044412 39 SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLRA 116 (311)
Q Consensus 39 ~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~~ 116 (311)
+.+++..|-+.+...|- -..++.- =+..+ .+.|++++|+.+.+.+.-||+.+|-+ -.+.|..+++...+.++...
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lI-R~sSL-mNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLI-RLSSL-MNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHH-HHHHH-HHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHH-HHHHH-HcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 66777888888888765 2222222 22344 78999999999999999999999988 56788888888888888777
Q ss_pred C
Q 044412 117 E 117 (311)
Q Consensus 117 ~ 117 (311)
|
T Consensus 99 g 99 (116)
T 2p58_C 99 Q 99 (116)
T ss_dssp C
T ss_pred C
Confidence 6
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=82.62 E-value=7 Score=25.78 Aligned_cols=51 Identities=4% Similarity=-0.091 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHhCCC---hhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChh
Q 044412 197 IRSWTTMITSYSQNKQ---FREALDAFNKTKKSGTGSDQ-VTMATVLSACAHLGALD 249 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~t~~~li~a~~~~~~~~ 249 (311)
...+..+-.++...++ .++|..+|++..+. .|+. .....+-..+...|+++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~ 60 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQ 60 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHH
Confidence 3344444444433322 45555555555542 3332 23333333444444444
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=82.01 E-value=3.8 Score=27.11 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHHHHhCCC---CccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHh
Q 044412 133 SSPVFVQTAMVDNYSYSNK---FFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQ 209 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~---~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~ 209 (311)
+.+...+..+-.++...++ .++ +..++++....| ..++.....+-..+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~----A~~~l~~AL~~d-----------------------p~~~rA~~~lg~~~~~ 55 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDE----VSLLLEQALQLE-----------------------PYNEAALSLIANDHFI 55 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHH----HHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHC-----------------------cCCHHHHHHHHHHHHH
Confidence 3456666666666654444 577 555555433211 1256777777788899
Q ss_pred CCChhHHHHHHHHHHhc
Q 044412 210 NKQFREALDAFNKTKKS 226 (311)
Q Consensus 210 ~g~~~~a~~~~~~m~~~ 226 (311)
.|++++|+..|+++.+.
T Consensus 56 ~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 56 SFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp TTCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999999875
No 226
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=81.95 E-value=23 Score=32.24 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=64.0
Q ss_pred cHhHHHHHHHHHHhCC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHhhCChHHHHHHHhhcC
Q 044412 196 DIRSWTTMITSYSQNK--QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG-ALDLGRGIQIYCRSLGRSLLVFFKLR 272 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~-~~~~a~~~~~~~~~~~~a~~~~~~~~ 272 (311)
+..+|+.=--.+.+.| +++++++.++++.+.. +-+...|+----.+.+.| ..+ ++.+.++++.
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~-------------~el~~~~~~I 171 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA-------------EELAFTDSLI 171 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH-------------HHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChH-------------HHHHHHHHHH
Confidence 5667777666777778 6699999999999854 225566665555555555 444 5666666666
Q ss_pred C---CCchhHHHHHHHHHhc--------------CChHHHHHHHHHHHH
Q 044412 273 E---KNLLCWNSITEALAIH--------------GFAHEALGMFDRMTY 304 (311)
Q Consensus 273 ~---p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~M~~ 304 (311)
+ .|...|+..-..+.+. +.++++.+.+++...
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 3 3556777776666653 456888888887764
No 227
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=80.28 E-value=4.2 Score=26.40 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHHHhhcC--CC-Cch-hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 263 RSLLVFFKLR--EK-NLL-CWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 263 ~a~~~~~~~~--~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+|...|++.. .| +.. .|..+-..|...|++++|...|++..+.
T Consensus 18 ~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 18 NALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444433 34 456 8888889999999999999999998764
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=80.22 E-value=15 Score=26.92 Aligned_cols=77 Identities=10% Similarity=-0.039 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHhCC---CCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC--cHhHHHHHHHHH
Q 044412 133 SSPVFVQTAMVDNYSYSN---KFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW--DIRSWTTMITSY 207 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g---~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~--~~~~y~~li~~~ 207 (311)
.++..+.-.+--++++.+ +++++..+.+.+++.- .| +...+-.+--+|
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---------------------------~p~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---------------------------SKEEQRDYVFYLAVGN 81 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---------------------------CHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------------------------CccchHHHHHHHHHHH
Confidence 366666666777888888 5667555555554431 12 122333455567
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATV 238 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (311)
.+.|++++|.++++...+ +.|+..--..|
T Consensus 82 ~kl~~Y~~A~~y~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHTSCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHh--cCCCCHHHHHH
Confidence 899999999999999987 47865433333
No 229
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.35 E-value=4.6 Score=28.99 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 42 ~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
++++-.+.+....+.|++.+..+.+++| .|..++..|..+|+-++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAc-RRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRAC-RRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 3456666666778999999999999999 99999999999987764
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=78.16 E-value=12 Score=24.98 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhc------CCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 198 RSWTTMITSYSQNKQFREALDAFNKTKKS------GTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 198 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.-+..|-..+...|+++.|...|++-.+. +-.+....+..|-.++.+.|+++.|...++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34556777788899999999999987653 123456788899999999999997766653
No 231
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.36 E-value=7.2 Score=31.09 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHhccCChhhHHHHHH
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVT--MATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~a~~~~~~~~~a~~~~~ 256 (311)
.+.+..+ +..|......++.+.+.+.|..++... -.+.+...++.|+.+.++.+++
T Consensus 183 ~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 183 RNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444443 455666666777777888887665421 1122333445566665544443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=75.69 E-value=19 Score=25.50 Aligned_cols=83 Identities=11% Similarity=-0.043 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC-----chhHHHHHHH
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN-----LLCWNSITEA 285 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~-----~~~~~~li~~ 285 (311)
..+..+.+-|.+-...|. |+..|--.+--++.++++.... ..+..+++++.+.+ ....-.|--|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~----------~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDI----------RKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHH----------HHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHH----------HHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344555555555555443 5555555555566666666532 13444444444222 1223445567
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 044412 286 LAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 286 ~~~~g~~~~a~~~~~~M~~ 304 (311)
+.+.|++++|.++++.+.+
T Consensus 84 ~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8888888888888888775
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.53 E-value=12 Score=25.43 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=31.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 212 QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
+.-+..+-+..+-...+-|++....+.++||.|.+++..|.+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~l 68 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRIL 68 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455666666666778888888888888888888777555554
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.40 E-value=21 Score=25.91 Aligned_cols=60 Identities=7% Similarity=-0.031 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 197 IRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 197 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
....+.-++.+...|+-+.-.+++.++.. +.+|++...-.+-.||.+.|+.+++..+..+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555667777888888888888888644 4678888888888888888888877666544
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=75.06 E-value=27 Score=28.78 Aligned_cols=99 Identities=9% Similarity=-0.080 Sum_probs=67.8
Q ss_pred HhHHHHHHHH-HHhC--CC------hhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhc-----cCChhhHHHHHHhhC
Q 044412 197 IRSWTTMITS-YSQN--KQ------FREALDAFNKTKKSGTGSD---QVTMATVLSACAH-----LGALDLGRGIQIYCR 259 (311)
Q Consensus 197 ~~~y~~li~~-~~~~--g~------~~~a~~~~~~m~~~g~~p~---~~t~~~li~a~~~-----~~~~~~a~~~~~~~~ 259 (311)
...|..++.+ ++.. |. ...|..++++..+ +-|+ ...|..|-..|.. .|+.++|++.|+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe--- 228 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE--- 228 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH---
Confidence 3456666653 3432 33 3566667777665 4566 5578888888887 488887766653
Q ss_pred ChHHHHHHHhhcCCC--CchhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC
Q 044412 260 SLGRSLLVFFKLREK--NLLCWNSITEALAIH-GFAHEALGMFDRMTYENVR 308 (311)
Q Consensus 260 ~~~~a~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~a~~~~~~M~~~g~~ 308 (311)
+|.++ .| ++.++...-+.+++. |+.++|..++++-......
T Consensus 229 ---rAL~L-----nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 229 ---HLTRY-----CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp ---HHHHH-----CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred ---HHHHh-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 33333 46 377888888888884 9999999999998886655
No 236
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=75.04 E-value=10 Score=32.46 Aligned_cols=124 Identities=8% Similarity=-0.097 Sum_probs=76.1
Q ss_pred hcCCCchhHHHHHHHHHHhC--CCCccchHHHHHHhccCCC--CCH-hHHHHHHHHHHHH----------------HHHH
Q 044412 130 NGFSSPVFVQTAMVDNYSYS--NKFFESRRVSRRLFDEMPE--RKF-ATWNTMIDAYARL----------------AELL 188 (311)
Q Consensus 130 ~g~~~~~~~~~~ll~~~~~~--g~~~~a~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~----------------a~~~ 188 (311)
.+.+.+...|...+.+.... ++.+. ..-|..+|++..+ |+- ..|..+--+|... +.+-
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~-~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKS-LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34566777888888765433 33211 1226666666543 432 2333222222110 1111
Q ss_pred HhhC--CCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 044412 189 FNKM--PAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQI 256 (311)
Q Consensus 189 ~~~m--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~ 256 (311)
...+ ...+..+|.++-..+...|++++|...+++....+ |+...|..+=..+.-.|+.++|...++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1122 13467788887777777799999999999999876 888888777777888999998876653
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.54 E-value=0.044 Score=48.62 Aligned_cols=80 Identities=9% Similarity=0.119 Sum_probs=50.2
Q ss_pred chhHHHHHHHHHhhccCChhHHHHhcccCCCCCeeeeec--cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCc
Q 044412 58 DCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFVYHA--FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSP 135 (311)
Q Consensus 58 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~ 135 (311)
.+.+|..|-.+. -+.+.+.+|.+-|-....|+...--+ ..+.|.+++-++++..-++. ..+
T Consensus 53 ~p~VWs~LgkAq-L~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----------------~ke 115 (624)
T 3lvg_A 53 EPAVWSQLAKAQ-LQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK----------------ARE 115 (624)
T ss_dssp CCCCSSSHHHHT-TTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----------------CCS
T ss_pred CccHHHHHHHHH-HccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----------------hcc
Confidence 445677777777 66777777776665554444332222 66777777777776533322 233
Q ss_pred hhHHHHHHHHHHhCCCCcc
Q 044412 136 VFVQTAMVDNYSYSNKFFE 154 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~ 154 (311)
+.+=+.|+-+|++.+++.+
T Consensus 116 ~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAE 134 (624)
T ss_dssp TTTTHHHHHHHHTSCSSST
T ss_pred cccHHHHHHHHHhhCcHHH
Confidence 4444778888888888888
No 238
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.59 E-value=14 Score=28.60 Aligned_cols=14 Identities=0% Similarity=-0.320 Sum_probs=9.0
Q ss_pred hccCChhHHHHhcc
Q 044412 71 SRFHFIDYTILVFP 84 (311)
Q Consensus 71 ~~~g~~~~a~~~~~ 84 (311)
++.|+.+.+..+++
T Consensus 17 ~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 17 VVQGNLPAVHRLVN 30 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 46677776666665
No 239
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.59 E-value=19 Score=24.29 Aligned_cols=42 Identities=12% Similarity=0.004 Sum_probs=32.6
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 263 ~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
+|..+.+.+.-||+..|-+|-. .+.|-..++...+.++..+|
T Consensus 57 ~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 57 EALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 7777777788899998877643 47788888888887777665
No 240
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.36 E-value=20 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044412 263 RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYEN 306 (311)
Q Consensus 263 ~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g 306 (311)
+|..+.+.+.-||+..|-+|-. .+.|-..++...+.++..+|
T Consensus 58 ~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 58 SALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 7788888888899998877744 46777788888777776655
No 241
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=72.33 E-value=41 Score=28.14 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhccCcchhHHHHHHHHHhhccC--ChhHHHHhcccCCCC---Ceeeeec----cccCCC-hhHHHHHHH
Q 044412 42 ELECVYATIVKTNANLDCFLAKQFISFCTSRFH--FIDYTILVFPQMQEP---NVFVYHA----FSSLRH-PLQAIAFYL 111 (311)
Q Consensus 42 ~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g--~~~~a~~~~~~m~~~---~~~~~~~----~~~~~~-~~~a~~~~~ 111 (311)
+...+++.+.... +-+..+|+.---.+ .+.+ .+++++.+++.+.+. |...|+- +.+.|. .+++++.++
T Consensus 92 ~EL~~~~~~L~~~-PKny~aW~hR~wlL-~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 92 AELGFLESCLRVN-PKSYGTWHHRCWLL-SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3455555555543 23667777766666 6777 478999999888754 4444443 445565 589999999
Q ss_pred HHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhC
Q 044412 112 YMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYS 149 (311)
Q Consensus 112 ~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 149 (311)
.+.+.. +-|...|+..-..+.+.
T Consensus 170 ~~I~~~---------------p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 170 SLITRN---------------FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHC---------------SCCHHHHHHHHHHHHHH
T ss_pred HHHHHC---------------CCCHHHHHHHHHHHHHh
Confidence 887653 45666777666665555
No 242
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=69.80 E-value=19 Score=27.79 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=35.4
Q ss_pred HHHHhhccChhhHHHHHHHHHHhccCcchh---HHHHHHHHHhhccCChhHHHHhcccCCCCC
Q 044412 31 ANQLKKCSSIKELECVYATIVKTNANLDCF---LAKQFISFCTSRFHFIDYTILVFPQMQEPN 90 (311)
Q Consensus 31 ~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~ 90 (311)
.......|+.+-++.+.+.+.+.|..++.. -.+. +... +..|+.+-+..+++.=..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A-~~~~~~~~v~~Ll~~g~~~~ 73 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLA-VITTLPSVVRLLVTAGASPM 73 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHH-HHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHH-HHcCCHHHHHHHHHcCCCcc
Confidence 334445677777777777777777665543 2233 3444 57788888777776543333
No 243
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.99 E-value=12 Score=29.83 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=16.9
Q ss_pred HHHHHhhccCChhHHHHhcccCCCCC
Q 044412 65 FISFCTSRFHFIDYTILVFPQMQEPN 90 (311)
Q Consensus 65 ll~~~~~~~g~~~~a~~~~~~m~~~~ 90 (311)
.+... .+.|+++.+..+++.=...+
T Consensus 8 ~L~~A-~~~g~~~~v~~Ll~~g~~~~ 32 (285)
T 1wdy_A 8 LLIKA-VQNEDVDLVQQLLEGGANVN 32 (285)
T ss_dssp HHHHH-HHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHH-HHcCCHHHHHHHHHcCCCcc
Confidence 34444 68899998888887654433
No 244
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=66.14 E-value=39 Score=27.81 Aligned_cols=80 Identities=8% Similarity=0.042 Sum_probs=60.3
Q ss_pred CCCc---hhHHHHHHHHHHhC-----CCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCC--cHhHHH
Q 044412 132 FSSP---VFVQTAMVDNYSYS-----NKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAW--DIRSWT 201 (311)
Q Consensus 132 ~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~--~~~~y~ 201 (311)
+.|+ ...|+.+-..|.+. |+.++ |+++|++..+- .| +..++.
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek----A~~~ferAL~L------------------------nP~~~id~~v 243 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEK----AHTAFEHLTRY------------------------CSAHDPDHHI 243 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH----HHHHHHHHHHH------------------------CCTTCSHHHH
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHH----HHHHHHHHHHh------------------------CCCCCchHHH
Confidence 4566 56889999999994 99999 88888764321 23 366777
Q ss_pred HHHHHHHhC-CChhHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 044412 202 TMITSYSQN-KQFREALDAFNKTKKSGTG--SDQVTMATVL 239 (311)
Q Consensus 202 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~t~~~li 239 (311)
..-+.++.. |+.+++.+++++-.+.... |+....+.+-
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 778888885 9999999999999987766 7765555443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=64.53 E-value=38 Score=32.05 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=26.9
Q ss_pred CC-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 273 EK-NLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 273 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.| +..+|-.|...|...|+++.|+-.++-+
T Consensus 367 aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 367 ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45 4789999999999999999999998877
No 246
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=64.33 E-value=24 Score=30.15 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCC
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~ 212 (311)
+.+..+|..+-..+...|++++ |...+++... + .|+...|..+=..+.-.|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~----A~~~l~rAl~-------------------L-----n~s~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDE----SYQAINTGID-------------------L-----EMSWLNYVLLGKVYEMKGM 325 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHH-------------------H-----CCCHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHh-------------------c-----CCCHHHHHHHHHHHHHCCC
Confidence 5567788777767777799999 5555554221 1 2566666666677778899
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMAT 237 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (311)
+++|.+.|++-.. +.|...||..
T Consensus 326 ~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 326 NREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp HHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcChHHH
Confidence 9999999988776 4688877654
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.05 E-value=25 Score=25.25 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
.-+..+-+..+-...+-|++....+.++||.+.+|+..|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~l 111 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRIL 111 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3345555555666677888888888888888877777555444
No 248
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=62.79 E-value=38 Score=27.83 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCcchh----HHHHHHHHHhhccCChhHHHHhcccCCCC
Q 044412 45 CVYATIVKTNANLDCF----LAKQFISFCTSRFHFIDYTILVFPQMQEP 89 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~~----~~~~ll~~~~~~~g~~~~a~~~~~~m~~~ 89 (311)
++.+.+++.|..++.. -++.|..+ ++.|+.+-+.-+++.=-.+
T Consensus 39 ~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 39 DLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHcCCch
Confidence 3455566778776543 23444444 5788888888777654333
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=60.62 E-value=47 Score=24.39 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=64.3
Q ss_pred CcHhHHHHHHHHHHhCCCh------hHHHHHHHHHHhcCCCCCHH----HHHHHHHHH---hccCChhhHHHHHHhhCCh
Q 044412 195 WDIRSWTTMITSYSQNKQF------REALDAFNKTKKSGTGSDQV----TMATVLSAC---AHLGALDLGRGIQIYCRSL 261 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~----t~~~li~a~---~~~~~~~~a~~~~~~~~~~ 261 (311)
.|..+|-..+.-.-+.|++ ++..++|++-.. .++|+.. .|.-|---| ...+++++|+++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677888888888888999 888888887665 4677531 111111111 1125566555555443221
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044412 262 GRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 262 ~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
. +.=...|-..-.=-.+.|+...|.+++.+-...+-+|.
T Consensus 90 h----------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 C----------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp C----------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred h----------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 0 11133455555555689999999999999887776663
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=60.34 E-value=36 Score=29.12 Aligned_cols=58 Identities=5% Similarity=-0.095 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
....++..+...|+.++|+..+...... -+.+...|..+|.++.+.|+..+|...|+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3446678888899999999999998764 244778999999999999999988887755
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.74 E-value=88 Score=27.11 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGS--DQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL 276 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~ 276 (311)
+...+-.-|.+.|++++|.+.|.++...-..+ -...+-.+|..+...+++..+..... .|..++..-..|+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~------ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLE------AVNSMIEKGGDWER 206 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHH------HHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHH------HHHHhhhcCCCHHH
Confidence 45577888999999999999999998743333 34678888999999999998877653 34444444333332
Q ss_pred ----hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 277 ----LCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 277 ----~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
..|..++ +...+++.+|...|-+..
T Consensus 207 ~~~lk~~~gl~--~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 207 RNRYKTYYGIH--CLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHHHG--GGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhChHHHHHHHHHHHh
Confidence 2333332 345788888888877654
No 252
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.80 E-value=52 Score=23.58 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=48.9
Q ss_pred HHHHHhhhhhcCC-CCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 6 VRAIITSFKKNSF-PTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
+..+...++..|. ++... ..+..+|......-.+.++++.+.+.+...+..|.-..|+.+ .+.|-+.
T Consensus 6 ~~~~~~~l~~~g~r~T~qR----~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L-~e~Glv~ 73 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQR----HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF-RESGLVK 73 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHH----HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHH----HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH-HHCCCEE
Confidence 3444444555554 33333 466777777777888899999999998888999998999999 8888654
No 253
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.38 E-value=74 Score=24.08 Aligned_cols=26 Identities=0% Similarity=-0.211 Sum_probs=13.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC
Q 044412 282 ITEALAIHGFAHEALGMFDRMTYENV 307 (311)
Q Consensus 282 li~~~~~~g~~~~a~~~~~~M~~~g~ 307 (311)
-+...++.|+.+-+..+++...+.|+
T Consensus 213 ~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 34555667777766666666555443
No 254
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=52.31 E-value=56 Score=23.00 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH---HHHhcccCCCCCe------eeeec---cccCCChhHHHHHH
Q 044412 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY---TILVFPQMQEPNV------FVYHA---FSSLRHPLQAIAFY 110 (311)
Q Consensus 43 ~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~---a~~~~~~m~~~~~------~~~~~---~~~~~~~~~a~~~~ 110 (311)
+++-+......|. |+..+--.+..++ .+..+... +..+++++...+. ..|.. +.+.|++++|.+.+
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~L-v~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCL-VRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHH-TTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444444 5555555555566 66665544 6677766654331 11222 78888899998888
Q ss_pred HHHHH
Q 044412 111 LYMLR 115 (311)
Q Consensus 111 ~~m~~ 115 (311)
+.+.+
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=51.13 E-value=2.5 Score=37.83 Aligned_cols=150 Identities=9% Similarity=-0.010 Sum_probs=79.0
Q ss_pred HHHhhhhhcCCCCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCC
Q 044412 8 AIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQ 87 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~ 87 (311)
..|.+|-+...|+.-. .++..-...|..+++.......++. .-++.+=+.|+-+| +|.+++.+..+++..-.
T Consensus 72 eAIdsyIkA~Dps~y~-----eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay-Ak~~rL~elEefl~~~N 143 (624)
T 3lvg_A 72 EAIDSYIKADDPSSYM-----EVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL-AKTNRLAELEEFINGPN 143 (624)
T ss_dssp TTTTSSCCCSCCCSSS-----HHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH-HTSCSSSTTTSTTSCCS
T ss_pred HHHHHHHhCCChHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH-HhhCcHHHHHHHHcCCC
Confidence 4456666666665544 3455555666666666655544444 34556667999999 99999888777765533
Q ss_pred CCCeeeeec-cccCCChhHHHHHHHHHHHCCCCch------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHH
Q 044412 88 EPNVFVYHA-FSSLRHPLQAIAFYLYMLRAEVLLT------TVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSR 160 (311)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~ 160 (311)
.-|+..... |...|.++.|.-+|..+....-..+ +.-..+-...-.-++.||--+-.+|...+.+.-|--...
T Consensus 144 ~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGL 223 (624)
T 3lvg_A 144 NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 223 (624)
T ss_dssp SSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHH
T ss_pred cccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcc
Confidence 222221111 5555555555555443322110000 000000000012345667777777777777777555555
Q ss_pred HHhcc
Q 044412 161 RLFDE 165 (311)
Q Consensus 161 ~~~~~ 165 (311)
.+.-.
T Consensus 224 niIvh 228 (624)
T 3lvg_A 224 HIVVH 228 (624)
T ss_dssp HHHCC
T ss_pred hhccc
Confidence 55443
No 256
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.24 E-value=41 Score=23.71 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~ 246 (311)
..+.+|.-|...|+.++|.+.++++..-... .......+..++-+.+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~ 55 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTG 55 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCC
Confidence 4567889999999999999999998632111 1234455566666653
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=48.96 E-value=1e+02 Score=29.09 Aligned_cols=52 Identities=6% Similarity=-0.113 Sum_probs=42.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCC
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMP 167 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~ 167 (311)
+...|+++-|+++-++-... .+-+-.+|-.|..+|...|+++. |.-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---------------aPseF~tW~~La~vYi~l~d~e~----ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---------------ALDSFESWYNLARCHIKKEEYEK----ALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------CSSCHHHHHHHHHHHHHTTCHHH----HHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---------------CchhhHHHHHHHHHHHHhccHHH----HHHHHhcCC
Confidence 66788999999988876553 23447899999999999999999 777777775
No 258
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.75 E-value=1.3e+02 Score=25.68 Aligned_cols=13 Identities=8% Similarity=0.209 Sum_probs=5.7
Q ss_pred ccCChhHHHHhcc
Q 044412 72 RFHFIDYTILVFP 84 (311)
Q Consensus 72 ~~g~~~~a~~~~~ 84 (311)
+.|+.+.+..+++
T Consensus 122 ~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 122 REGHVETVLALLE 134 (437)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444443
No 259
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.92 E-value=32 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCC-hhHHHHHHHHHHhcCCCCCH
Q 044412 199 SWTTMITSYSQNKQ-FREALDAFNKTKKSGTGSDQ 232 (311)
Q Consensus 199 ~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~ 232 (311)
-++.+..+. ..++ ...-.++.+.+.+.|..|+.
T Consensus 140 g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 140 GYTALIEAV-GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp SCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCc
Confidence 344444444 3343 33345666777777776654
No 260
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.20 E-value=19 Score=29.11 Aligned_cols=24 Identities=4% Similarity=-0.216 Sum_probs=13.1
Q ss_pred HHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 141 AMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 141 ~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
+.|...+..|+.+- ++.+++.+..
T Consensus 64 t~L~~A~~~g~~~~----v~~Ll~~ga~ 87 (285)
T 3kea_A 64 FPLHQAATLEDTKI----VKILLFSGLD 87 (285)
T ss_dssp CHHHHHTTSSSCHH----HHHHHHTTCC
T ss_pred CHHHHHHHcCCHHH----HHHHHHCCCC
Confidence 34455555666665 5555555443
No 261
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.40 E-value=23 Score=28.54 Aligned_cols=102 Identities=8% Similarity=-0.013 Sum_probs=53.4
Q ss_pred HHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhcccCCCCCeee---eec---cccCCChhHHHHHHHHHHHCCC
Q 044412 45 CVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQMQEPNVFV---YHA---FSSLRHPLQAIAFYLYMLRAEV 118 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~---~~~~~~~~~a~~~~~~m~~~~~ 118 (311)
++.+.+.+.|..++...-...+... +..|+.+-+..+++.=..++... ++. .+..|+.+-+
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v------------ 111 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQA-ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV------------ 111 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHH-TTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH------------
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHH------------
Confidence 3445555667665544333344455 67788888877776543333221 111 3344443322
Q ss_pred CchHHHHHHHHhcCCCchhH---HHHHHHHHHhCCCCccchHHHHHHhccCCCC
Q 044412 119 LLTTVHGQVWKNGFSSPVFV---QTAMVDNYSYSNKFFESRRVSRRLFDEMPER 169 (311)
Q Consensus 119 ~p~~~~~~~~~~g~~~~~~~---~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~ 169 (311)
+.+++.|..++... +.+.+...+..|+.+- ++.+++.....
T Consensus 112 ------~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~ 155 (285)
T 3kea_A 112 ------KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPST 155 (285)
T ss_dssp ------HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTT
T ss_pred ------HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCcc
Confidence 22233334444322 2345666677787777 77777776543
No 262
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.12 E-value=58 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=15.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 044412 283 TEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 283 i~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+...+..|+...+.++.+.++++
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455677777788887777653
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.89 E-value=1.6e+02 Score=25.46 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHhhCCCCcHh----HHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 044412 185 AELLFNKMPAWDIR----SWTTMITSYSQNKQFREALDAFNKTKKS 226 (311)
Q Consensus 185 a~~~~~~m~~~~~~----~y~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (311)
+..++..-.+|+.. .|..++. ...+++.+|...|-+....
T Consensus 194 a~~~~~~~~d~~~~~~lk~~~gl~~--l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 194 VNSMIEKGGDWERRNRYKTYYGIHC--LAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHTTCCCTHHHHHHHHHHHHGG--GGTSCHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHhcc
Confidence 44444444444332 3444432 3468899999888886553
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.15 E-value=57 Score=23.73 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 245 (311)
..+.+|.-|...|+.++|.+.++++..-... .......+..++-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~ 56 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLEST 56 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCC
Confidence 4567888899999999999999998632111 123445555566654
No 265
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.34 E-value=1e+02 Score=22.54 Aligned_cols=68 Identities=7% Similarity=0.133 Sum_probs=49.2
Q ss_pred HHHHhhhhhcCCCCCchhhhHHHHHHHHhhccChhhHHHHHHHHHHh--ccCcchhHHHHHHHHHhhccCChhH
Q 044412 7 RAIITSFKKNSFPTSVSFIRIHIIANQLKKCSSIKELECVYATIVKT--NANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
..+...+++.|.-..+. ...+..+|....+.-.+.++++.+.+. +...+..|.-.-|+.+ .+.|-+..
T Consensus 18 ~~~~~~L~~~g~r~T~q---R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L-~e~Glv~~ 87 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQ---REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLL-EEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHTCCCCHH---HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HHCCCEEE
Confidence 34444455554433333 246777787777888899999999998 8888888888888999 88885543
No 266
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.22 E-value=43 Score=22.18 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=31.8
Q ss_pred ChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044412 260 SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGM 298 (311)
Q Consensus 260 ~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 298 (311)
..+.+.++++.+++.+...|..++.++...|+..-|..+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 445788888999989999999999999888887666443
No 267
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.10 E-value=46 Score=19.86 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCC
Q 044412 288 IHGFAHEALGMFDRMTYENVRPNG 311 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~~g~~P~~ 311 (311)
..|+.+.|.+.+-+|...+..|++
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 578899999999999999998875
No 268
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.65 E-value=78 Score=23.36 Aligned_cols=55 Identities=7% Similarity=-0.142 Sum_probs=37.3
Q ss_pred hhHHHHHHhhCChHHHHHHHhhcCC----C--CchhHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 044412 249 DLGRGIQIYCRSLGRSLLVFFKLRE----K--NLLCWNSITE------ALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 249 ~~a~~~~~~~~~~~~a~~~~~~~~~----p--~~~~~~~li~------~~~~~g~~~~a~~~~~~M~~ 304 (311)
..+..+|+. |+.-+|.++++...+ + ....|..||. -..+.|+..-|..++.+-..
T Consensus 37 ~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 37 VHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555 666688888888772 2 2346677776 23358999999999998764
No 269
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.54 E-value=1e+02 Score=22.10 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
..+..+|......-.+.++++.+.+.+...+..|.-..|+.+ .+.|-+.
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L-~e~Glv~ 78 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFL-EKENFIS 78 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH-HHCCcEE
Confidence 466777777777888899999999998888999988899999 8888654
No 270
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.84 E-value=49 Score=23.18 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=40.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.+++.+...+..-.|.++++.+.+.+-..+..|..-.|+.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 566777777788899999999999888888889888889999988775
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.70 E-value=1.3e+02 Score=25.48 Aligned_cols=43 Identities=7% Similarity=-0.120 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCchhH--HHHHHHHHHhCCCCccchHHHHHHhccCCC
Q 044412 122 TVHGQVWKNGFSSPVFV--QTAMVDNYSYSNKFFESRRVSRRLFDEMPE 168 (311)
Q Consensus 122 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~ 168 (311)
.+.+.+++.|..++... -.+.+...+..|+.+- ++.+++....
T Consensus 160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~ 204 (437)
T 1n11_A 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGS 204 (437)
T ss_dssp HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCC
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCC
Confidence 55555666665544321 1123444455565555 5556555443
No 272
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.06 E-value=1.3e+02 Score=22.57 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCcchhH--HHHHHHHHhhccCChhHHHHhcccCCCC
Q 044412 45 CVYATIVKTNANLDCFL--AKQFISFCTSRFHFIDYTILVFPQMQEP 89 (311)
Q Consensus 45 ~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~g~~~~a~~~~~~m~~~ 89 (311)
++.+.+.+.|..++... -...+... ++.|+.+-+..+++.-...
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~~~~~ 68 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWA-AINNRIDLVKYYISKGAIV 68 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHH-HHhCCHHHHHHHHHcCCcc
Confidence 34455566676554321 12234444 6778888888877765543
No 273
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.45 E-value=1e+02 Score=23.92 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhC---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 199 SWTTMITSYSQN---KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 199 ~y~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
..-.+|+++.++ ++++-|+-.+.+|.+.|--|.-..=..++-|.-..|..+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAd 87 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLAD 87 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 333567777664 899999999999999998888777777887777766543
No 274
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=36.35 E-value=1.3e+02 Score=22.15 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHh
Q 044412 211 KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIY 257 (311)
Q Consensus 211 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~ 257 (311)
+++++|.++|+.+++.+-+. ...|..--.==.+.|++..|++++..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 78888888888887653333 44444444444567888888877655
No 275
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=36.35 E-value=1.7e+02 Score=23.52 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhC---ChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIYCR---SLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 226 ~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~---~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.|+..+......+.. ...|++..+....+... ..-....+.+-...+.......++++... |+.++|.+++.++
T Consensus 177 ~~~~i~~~~l~~l~~--~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~l~~l 253 (319)
T 2chq_A 177 EGVKITEDGLEALIY--ISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALK-GNFMEARELLDRL 253 (319)
T ss_dssp TCCCBCHHHHHHHHH--TTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 466666666555553 23566666665554311 00001112222223333344455665554 7888999998888
Q ss_pred HH-cCCCC
Q 044412 303 TY-ENVRP 309 (311)
Q Consensus 303 ~~-~g~~P 309 (311)
.. .|..|
T Consensus 254 ~~~~g~~~ 261 (319)
T 2chq_A 254 MVEYGMSG 261 (319)
T ss_dssp HHHSCCCH
T ss_pred HHHcCCCH
Confidence 76 77655
No 276
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.66 E-value=1.1e+02 Score=22.05 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHHHHHHhhcc-ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH
Q 044412 28 HIIANQLKKCS-SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 28 ~~~~~~l~~~~-~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
..+..+|.... ..-.+.++++.+.+.+...+..|.-.-|+.+ .+.|-+..
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L-~e~Glv~~ 70 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQF-DDAGIVTR 70 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHCCcEEE
Confidence 36677776666 7778899999999998888999998999999 88886653
No 277
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=33.84 E-value=1.4e+02 Score=22.06 Aligned_cols=98 Identities=6% Similarity=-0.036 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCH-------HHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhc
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKS-GTGSDQ-------VTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKL 271 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-------~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~ 271 (311)
+-.-+..+...|.++.|+-+.+-+... +..|+. .++..+-+++...|++..|...|+. |.+.-+.+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q------ALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM------ALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH------HHHHHHHH
Confidence 444577778889999999887776542 234442 3666777889999999999988865 33333322
Q ss_pred CC--------------C-------CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 272 RE--------------K-------NLLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 272 ~~--------------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.+ | +...---+-.+|...|++++|+.+++...
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 21 1 11222336778889999999999988653
No 278
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.69 E-value=45 Score=23.75 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
..+++.+...+..-.|.++++.+.+.+-..+..|..--|+.+...|-+..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 35667777777788899999999998888899998888899999887753
No 279
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=33.06 E-value=66 Score=20.46 Aligned_cols=45 Identities=7% Similarity=0.127 Sum_probs=33.2
Q ss_pred hCChHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 258 CRSLGRSLLVFFKLR--EKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 258 ~~~~~~a~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
+.....-..++.+++ .|++.||+-+.+.+-+..-..+++.+.+++
T Consensus 16 mrn~PIP~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 16 MKVAPIPKQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp GGSCBCCHHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HhcCCCCHHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344444567778887 789999999988877777677777776654
No 280
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.94 E-value=59 Score=24.91 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=36.7
Q ss_pred HHHHHHHhC---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 044412 202 TMITSYSQN---KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGAL 248 (311)
Q Consensus 202 ~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~ 248 (311)
.+|+++.++ ++++-|+-.+.+|.+.|--|.-..=..++-|.-..|..
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlA 58 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNA 58 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCC
Confidence 456666664 89999999999999999888777777777777666644
No 281
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.93 E-value=96 Score=21.60 Aligned_cols=49 Identities=8% Similarity=0.113 Sum_probs=40.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
..+..+|......-.++++++.+.+.+...+..|.-..|+.+ .+.|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L-~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSM-ASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH-HTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH-HHCCCEE
Confidence 356677776677888899999999998888999999999999 8888654
No 282
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.25 E-value=86 Score=22.22 Aligned_cols=50 Identities=4% Similarity=0.027 Sum_probs=41.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
..+..+|......-.+.++++.+.+.+...+..|.-..|+.+ .+.|-+..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L-~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSL-ADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHCCCEEE
Confidence 466777777777788899999999999888999999999999 88886654
No 283
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.37 E-value=31 Score=20.14 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCcchhHHHHHHHHHhhccCC--hhHHHHhcccCCCCC
Q 044412 44 ECVYATIVKTNANLDCFLAKQFISFCTSRFHF--IDYTILVFPQMQEPN 90 (311)
Q Consensus 44 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~--~~~a~~~~~~m~~~~ 90 (311)
.+..+.+++.|+.++.. ..+. .+.|+ ++.|.+++..|.-|+
T Consensus 10 ~qmlq~L~eMGFd~era-----e~Al-k~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMA-----GRAL-KQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHHCCHHHH-----HHHH-HHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHcCCCHHHH-----HHHH-HHhCcccHHHHHHHHHHhcCCC
Confidence 56678888999987533 3344 55555 999999998886554
No 284
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.30 E-value=2.6e+02 Score=24.26 Aligned_cols=189 Identities=11% Similarity=0.023 Sum_probs=105.5
Q ss_pred CCChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHH
Q 044412 100 LRHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMID 179 (311)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~ 179 (311)
.+++++|++.+..+++..- ..............++..|...|+++...+....+ ......--.....++.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r---------~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L-skkr~qlk~ai~~~V~ 98 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTR---------QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL-SKKHGQLKLSIQYMIQ 98 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HTTTTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhh---------hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHhhhhHHHHHHHHH
Confidence 3677888887766654210 00113445677888999999999998843322222 1111111112223333
Q ss_pred HHHHH-----------HHHHHhhCCC---C-------cHhHHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCCC---HH
Q 044412 180 AYARL-----------AELLFNKMPA---W-------DIRSWTTMITSYSQNKQFREALDAFNKTKKS--GTGSD---QV 233 (311)
Q Consensus 180 ~~~~~-----------a~~~~~~m~~---~-------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~ 233 (311)
.+..- -..+.+.... . .......|...|-..|++.+|.+++.++... |.-.. ..
T Consensus 99 ~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve 178 (445)
T 4b4t_P 99 KVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ 178 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 32221 1112222211 0 1123356777888899999999999998652 32222 24
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCC--chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044412 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKN--LLCWNSITEALAIHGFAHEALGMFDRMT 303 (311)
Q Consensus 234 t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~M~ 303 (311)
.|...+..|...+++..|..+.... ....+..-..|+ ...|..++.-+...+++.+|...|.+..
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki-----~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKI-----LKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----HHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6777788888999998887765331 011222222222 2456777777777888888877766653
No 285
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=30.63 E-value=2.1e+02 Score=22.98 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=38.7
Q ss_pred cCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChH---HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044412 226 SGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLG---RSLLVFFKLREKNLLCWNSITEALAIHGFAHEALGMFDRM 302 (311)
Q Consensus 226 ~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~---~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~M 302 (311)
.|+..+......+...+ .|++..+..+++...... ....+.+-...+.......++.+.. .+++.+|.+++.++
T Consensus 185 ~~~~~~~~~~~~l~~~~--~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~l 261 (327)
T 1iqp_A 185 EGLELTEEGLQAILYIA--EGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLAL-KGNFLKAREKLREI 261 (327)
T ss_dssp TTCEECHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 45555555555544432 456665555544311100 0111122222233333344455433 36888888888887
Q ss_pred H-HcCCCC
Q 044412 303 T-YENVRP 309 (311)
Q Consensus 303 ~-~~g~~P 309 (311)
. ..|..|
T Consensus 262 l~~~g~~~ 269 (327)
T 1iqp_A 262 LLKQGLSG 269 (327)
T ss_dssp HHHHCCCH
T ss_pred HHHcCCCH
Confidence 7 667654
No 286
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=30.43 E-value=1.3e+02 Score=21.24 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=7.0
Q ss_pred ccCChhHHHHhcc
Q 044412 72 RFHFIDYTILVFP 84 (311)
Q Consensus 72 ~~g~~~~a~~~~~ 84 (311)
+.|+.+.+..+++
T Consensus 17 ~~g~~~~v~~ll~ 29 (165)
T 3twr_A 17 KAGDVETVKKLCT 29 (165)
T ss_dssp HHTCHHHHHHHCC
T ss_pred HhCCHHHHHHHHH
Confidence 4455555555554
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.24 E-value=56 Score=25.11 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=35.7
Q ss_pred HHHHHHHhC---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 202 TMITSYSQN---KQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 202 ~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.+|+++.++ ++++-|+-.+.+|.+.| -|.-..=..++-|.-..|..+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAd 65 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGN 65 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCC
Confidence 456666664 89999999999999999 776666667777776666543
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.98 E-value=1.1e+02 Score=21.56 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=40.1
Q ss_pred HHHHHHHhhcc-ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH
Q 044412 28 HIIANQLKKCS-SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 28 ~~~~~~l~~~~-~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
..+..+|.... ..-.+.++++.+.+.+...+..|.-.-|+.+ .+.|-+..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L-~e~Glv~~ 71 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQF-EAAGLVVR 71 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHCCcEEE
Confidence 46677777666 7788899999999998888999988889999 88776553
No 289
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.86 E-value=80 Score=22.54 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 201 TTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
-.++..+...+..-.|.++++.+.+.+-..+..|..--|+.+...|-+.
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3556666677778889999999998887888888888888888888765
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.75 E-value=60 Score=24.97 Aligned_cols=65 Identities=11% Similarity=0.193 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDA 180 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~ 180 (311)
+...++.++|..|...|+ -.--..-|...-..+-..|++.+ |.++++.+.+........|...
T Consensus 93 ~~~~~p~~if~~L~~~~I-------------G~~~AlfYe~wA~~lE~~g~~~~----A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGI-------------GTKLSLFYEEFSKLLENAQFFLE----AKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp TCHHHHHHHHHHHHHHTS-------------STTBHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHTTCBSHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCC-------------cHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCccHHHHHHH
Confidence 335678888888877664 23345678888888999999999 8888888776554444444444
Q ss_pred HH
Q 044412 181 YA 182 (311)
Q Consensus 181 ~~ 182 (311)
|.
T Consensus 156 ~~ 157 (202)
T 3esl_A 156 LS 157 (202)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 291
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=29.72 E-value=2.1e+02 Score=22.58 Aligned_cols=8 Identities=13% Similarity=-0.105 Sum_probs=3.9
Q ss_pred HhCCChhH
Q 044412 208 SQNKQFRE 215 (311)
Q Consensus 208 ~~~g~~~~ 215 (311)
+..|..+-
T Consensus 193 ~~~g~~~~ 200 (269)
T 4b93_B 193 VIEKHVFV 200 (269)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 34455543
No 292
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=29.34 E-value=86 Score=18.09 Aligned_cols=40 Identities=5% Similarity=-0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhHHHHhccc
Q 044412 43 LECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDYTILVFPQ 85 (311)
Q Consensus 43 ~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 85 (311)
+.+...+|...|+.-+-.=.+.|+. .+.|++..|+++.+.
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~---~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ---TKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH---HTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH---HccCCHHHHHHHhhh
Confidence 4566778999999855554577765 668999999988754
No 293
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.07 E-value=74 Score=22.41 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHHHHHHHhCC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 201 TTMITSYSQNK-QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 201 ~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
-.++..+...+ ..-.|.++++.+.+.+-..+..|..--|+.+...|-+.
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35566666666 77889999999999888888888888888888888775
No 294
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.88 E-value=1e+02 Score=18.80 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHL 245 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 245 (311)
.++-+++.++...-+++++..+++..+.| ..+..+|-.-++..++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 46778888888888999999999999988 66777777777777663
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.79 E-value=77 Score=22.83 Aligned_cols=51 Identities=2% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
-=-.++..+...+..-.|.++++.+.+.+-..+..|..--|..+...|-+.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344567777777778899999999998887888888888888898888765
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.45 E-value=2e+02 Score=22.05 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=27.8
Q ss_pred HHHHHHhh--ccChhhHHHHHHHHHHhccCcch-hHHHHHHHHHhhccCChhHHHHhcc
Q 044412 29 IIANQLKK--CSSIKELECVYATIVKTNANLDC-FLAKQFISFCTSRFHFIDYTILVFP 84 (311)
Q Consensus 29 ~~~~~l~~--~~~~~~~~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~ 84 (311)
.++..... |....+...+|..|.+.|+--.. .-|......+ -..|++++|.++|+
T Consensus 82 lWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 82 IWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLL-ENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 33433443 33345666777777776664333 2334444444 54555555555553
No 297
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.95 E-value=1.6e+02 Score=20.87 Aligned_cols=49 Identities=4% Similarity=0.131 Sum_probs=39.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChhH
Q 044412 28 HIIANQLKKCSSIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFIDY 78 (311)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 78 (311)
..+..+|...+ ...+.++++.+.+.+...+..|.-.-|+.+ .+.|-+..
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L-~e~Glv~~ 70 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELL-EELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHH-HHCCcEEE
Confidence 35566666656 778899999999999888998888888998 88886543
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.73 E-value=1.8e+02 Score=21.19 Aligned_cols=149 Identities=7% Similarity=-0.007 Sum_probs=66.6
Q ss_pred HHHHHhCCCCccchHHHHHHhccCC-C---CCHhHHHHHHHHHHHH----HHHHHhhCCCC---cHhHHHHHHHHHHhCC
Q 044412 143 VDNYSYSNKFFESRRVSRRLFDEMP-E---RKFATWNTMIDAYARL----AELLFNKMPAW---DIRSWTTMITSYSQNK 211 (311)
Q Consensus 143 l~~~~~~g~~~~a~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~----a~~~~~~m~~~---~~~~y~~li~~~~~~g 211 (311)
|...+..|+.+. ...++.... . .+..-++.+..+.... ++.+++.-.++ |..-++.+.. .+..|
T Consensus 9 L~~A~~~g~~~~----v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKK----VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY-AGAQG 83 (201)
T ss_dssp HHHHHHTTCHHH----HHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHHHhccHHH----HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcC
Confidence 444566788888 777777654 2 2222233333333322 55555544333 2223334333 34557
Q ss_pred ChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHhccCChhhHHHHHHhh-CChHHHHHHHhhcCCCCchhHHHHHHHHH
Q 044412 212 QFREALDAFNKTKKSGTGS---DQVTMATVLSACAHLGALDLGRGIQIYC-RSLGRSLLVFFKLREKNLLCWNSITEALA 287 (311)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p---~~~t~~~li~a~~~~~~~~~a~~~~~~~-~~~~~a~~~~~~~~~p~~~~~~~li~~~~ 287 (311)
+.+-+..+++. .+..+ |..-.+.| ...+..|+.+.++.+++.. .++. .+|..-++.|..+..
T Consensus 84 ~~~~~~~Ll~~---~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDID----------FQNDFGYTALIEAVG 149 (201)
T ss_dssp CHHHHHHHHHH---SCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTT----------CCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhc---cCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcC----------CCCCCCCCHHHHHHH
Confidence 76655555543 22112 11111222 2233445665444444321 1111 233333444444443
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC
Q 044412 288 IHGFAHEALGMFDRMTYENVRPN 310 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M~~~g~~P~ 310 (311)
.......-.++.+.+.+.|..||
T Consensus 150 ~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 150 LREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp SSCCSHHHHHHHHHHHHTTCCTT
T ss_pred hccchhhHHHHHHHHHHCCCCCC
Confidence 33223333556666666676665
No 299
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.69 E-value=4.6e+02 Score=26.01 Aligned_cols=110 Identities=13% Similarity=-0.028 Sum_probs=64.5
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-----------------------HHHHHHHHHH
Q 044412 185 AELLFNKMPAWDIRSWTTMITSYSQNKQFREALDAFNKTKKSGTGSD-----------------------QVTMATVLSA 241 (311)
Q Consensus 185 a~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------------------~~t~~~li~a 241 (311)
+.++..-.+. +...--.+-.+|...|++++|.+.|.+-- .|+..+ ..-|..++..
T Consensus 831 ~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L 908 (1139)
T 4fhn_B 831 CMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK 908 (1139)
T ss_dssp HHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH
T ss_pred HHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHH
Confidence 4444444443 33322234456777899999999997742 122111 1224556666
Q ss_pred HhccCChhhHHHHHHhhCChHHHHHHHhhcCC--CC--chhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044412 242 CAHLGALDLGRGIQIYCRSLGRSLLVFFKLRE--KN--LLCWNSITEALAIHGFAHEALGMFDRMTYE 305 (311)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~--p~--~~~~~~li~~~~~~g~~~~a~~~~~~M~~~ 305 (311)
+-+.+..+.+.++ |...++.... ++ ...|..+.+++...|++++|...+-.+...
T Consensus 909 Fe~~~~~~~vi~f---------a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 909 LFEESAYIDALEF---------SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTSCCHHHHHH---------HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHcCCHHHHHHH---------HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 6666666655543 2222222221 11 136899999999999999998888776544
No 300
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=27.43 E-value=1.7e+02 Score=20.81 Aligned_cols=28 Identities=18% Similarity=0.003 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 277 LCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 277 ~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
...-.|--|+.+.|++++|.++.+.+.+
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455666688888888888888887765
No 301
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=27.31 E-value=33 Score=27.44 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=19.1
Q ss_pred hhccChhhHHHHHHHHHHhccCcchh---HHHHHHHHHhhccCChhHHHHhcccCCC
Q 044412 35 KKCSSIKELECVYATIVKTNANLDCF---LAKQFISFCTSRFHFIDYTILVFPQMQE 88 (311)
Q Consensus 35 ~~~~~~~~~~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~g~~~~a~~~~~~m~~ 88 (311)
..+........+...+.+.|..++.. -++.|.-+ +..|+.+-+..+++.-..
T Consensus 57 ~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A--~~~g~~~~v~~Ll~~~a~ 111 (269)
T 4b93_B 57 CQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVA--ALHGRADLIPLLLKHGAN 111 (269)
T ss_dssp ------------------CCCCTTCCCTTSCCHHHHH--HHTTCTTHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHhcCCC
Confidence 33334444455566677777765443 22334333 567777777777665433
No 302
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.57 E-value=77 Score=20.91 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=7.7
Q ss_pred CcHhHHHHHHHHHHhCCC
Q 044412 195 WDIRSWTTMITSYSQNKQ 212 (311)
Q Consensus 195 ~~~~~y~~li~~~~~~g~ 212 (311)
++...|..+++++...|.
T Consensus 66 rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 66 RGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp SCTTHHHHHHHHHHTTTC
T ss_pred cChHHHHHHHHHHHHcCc
Confidence 334444444444443333
No 303
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.31 E-value=2.4e+02 Score=24.43 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=54.1
Q ss_pred cHhHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHH----hccCChhhHHHHHHhhCChHHHHHHHhh
Q 044412 196 DIRSWTTMITSYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSAC----AHLGALDLGRGIQIYCRSLGRSLLVFFK 270 (311)
Q Consensus 196 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~a~----~~~~~~~~a~~~~~~~~~~~~a~~~~~~ 270 (311)
.......++..|...|+++...+.+.-+.+ +|..+... ..+++.+ ......+.. .-..+.+.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~d~~-----------~~~~~i~~ 121 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSLDLN-----------TRISVIET 121 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTTHHH-----------HHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchhHH-----------HHHHHHHH
Confidence 345677788888888888888777766654 34333322 2333322 222222111 11222222
Q ss_pred cC---C--C-----CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044412 271 LR---E--K-----NLLCWNSITEALAIHGFAHEALGMFDRMTY 304 (311)
Q Consensus 271 ~~---~--p-----~~~~~~~li~~~~~~g~~~~a~~~~~~M~~ 304 (311)
.. + - .......|...+...|++.+|.+++.++..
T Consensus 122 l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 122 IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 1 1 112346778888899999999999998764
No 304
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.86 E-value=1.6e+02 Score=22.05 Aligned_cols=15 Identities=0% Similarity=-0.024 Sum_probs=9.8
Q ss_pred hccCChhHHHHhccc
Q 044412 71 SRFHFIDYTILVFPQ 85 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~ 85 (311)
++.|+.+-+..+++.
T Consensus 48 ~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 48 CSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHh
Confidence 456777777666654
No 305
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Probab=25.78 E-value=65 Score=24.62 Aligned_cols=120 Identities=8% Similarity=0.073 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccC--------CCCCHhHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEM--------PERKFATWN 175 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~--------~~~~~~~~~ 175 (311)
+.+.++|..+.+.+. ++ ...|...+.+.|+.|- .+.+++.- ..+-+..|.
T Consensus 40 e~i~dlf~~L~e~~~---------------l~---~~fL~ELL~~I~R~DL----L~~~l~~~~~~ve~~l~~~~is~yR 97 (195)
T 2bbr_A 40 TTVTQALCSLSQQRK---------------LT---LAALVEMLYVLQRMDL----LKSRFGLSKEGAEQLLGTSFLTRYR 97 (195)
T ss_dssp CSHHHHHHHHHHTTC---------------CC---HHHHHHHHHHTTCHHH----HHHHHCCCHHHHHTTTTSSSCCHHH
T ss_pred ccHHHHHHHHHHcCC---------------Cc---HHHHHHHHHHcCHHHH----HHHHHCcCHHHHHHHhcccccCHHH
Confidence 566889988887762 33 5667778899999988 66665532 113334555
Q ss_pred HHHHHHHHHHHHHHhhCCCCcHhHHHHHHHHHHhCCChh-----HHHHHHHHHHhcC-CCCCHHHHHHHHHHHhccCChh
Q 044412 176 TMIDAYARLAELLFNKMPAWDIRSWTTMITSYSQNKQFR-----EALDAFNKTKKSG-TGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 176 ~li~~~~~~a~~~~~~m~~~~~~~y~~li~~~~~~g~~~-----~a~~~~~~m~~~g-~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.++.-. =+++.+.|....-.+...+.-.++.+ .+.++|.+|.+.| +.|+-.. .|-..+...++.+
T Consensus 98 ~LL~~I-------se~Lt~edl~~lKFL~~~~ipk~kle~~~~~s~ldlf~~LEk~~~l~~~nL~--~L~~iL~~I~R~D 168 (195)
T 2bbr_A 98 KLMVCV-------GEELDSSELRALRLFACNLNPSLSTALSESSRFVELVLALENVGLVSPSSVS--VLADMLRTLRRLD 168 (195)
T ss_dssp HHHHHH-------HTTCCHHHHHHHHHHHHHHCGGGGGGCCTTCCHHHHHHHHHHTTSCBTTBCH--HHHHHHHHTTCHH
T ss_pred HHHHHH-------HHhcCHHHHHHHHHHhhcccchhhcccccCCCHHHHHHHHHhhCCCCchhHH--HHHHHHHHcChHH
Confidence 444333 34444455555555555555555555 8999999999877 4444332 2333344445555
Q ss_pred hHHHH
Q 044412 250 LGRGI 254 (311)
Q Consensus 250 ~a~~~ 254 (311)
.+..+
T Consensus 169 L~~~i 173 (195)
T 2bbr_A 169 LCQQL 173 (195)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 306
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.71 E-value=2.1e+02 Score=21.40 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=29.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHhccCChhhHHHHH
Q 044412 204 ITSYSQNKQFREALDAFNKTKKSGTGS---------DQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
+...+..|+.+-+..+++.+.+.|..+ |..-.+.| ...++.|+.+-++.++
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl-~~A~~~g~~~~v~~Ll 217 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF-KLAGVEGNIVMFQHLM 217 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH-HHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH-HHHHHcCCHHHHHHHH
Confidence 344466788888888888888877544 22223333 3334456666555444
No 307
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.37 E-value=34 Score=20.45 Aligned_cols=37 Identities=14% Similarity=0.008 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hccCChh
Q 044412 213 FREALDAFNKTKKSGTGSDQVTMATVLSAC-AHLGALD 249 (311)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~li~a~-~~~~~~~ 249 (311)
.++|.+.|.+|++..--+..-||.-.|+.+ ++..++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~ 39 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYW 39 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccc
Confidence 478999999998754444456888888888 6655443
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.36 E-value=1.3e+02 Score=18.69 Aligned_cols=49 Identities=8% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHHHhhcc-ChhhHHHHHHHHHHhccCcchhHHHHHHHHHhhccCChh
Q 044412 28 HIIANQLKKCS-SIKELECVYATIVKTNANLDCFLAKQFISFCTSRFHFID 77 (311)
Q Consensus 28 ~~~~~~l~~~~-~~~~~~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 77 (311)
..+..++.... ..-.+.++++.+.+.+...+..|....|+.+ .+.|-+.
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L-~~~Glv~ 69 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF-DDAGIVT 69 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHHTSEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH-HHCCCeE
Confidence 35666676554 5667799999999888778888888889888 7777554
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.86 E-value=81 Score=22.55 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhh
Q 044412 202 TMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
.+++.+...+ .-.|.++++.+.+.+-..+..|..--|+.+...|-+..
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4455555556 67899999999998888888887777888888886653
No 310
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.78 E-value=1.1e+02 Score=18.46 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhcc---ChhhH--HHHHHHHHHhccCcchhH
Q 044412 25 IRIHIIANQLKKCS---SIKEL--ECVYATIVKTNANLDCFL 61 (311)
Q Consensus 25 ~~~~~~~~~l~~~~---~~~~~--~~l~~~m~~~g~~p~~~~ 61 (311)
++..++..++.... .+... +.+.+.+.+.|+.|+...
T Consensus 12 VS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 12 VSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp SCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC---
T ss_pred cCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHH
Confidence 34567788887655 33333 788888888999998754
No 311
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.01 E-value=3.2e+02 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHhCCCCccchHH
Q 044412 136 VFVQTAMVDNYSYSNKFFESRRV 158 (311)
Q Consensus 136 ~~~~~~ll~~~~~~g~~~~a~~~ 158 (311)
.++|.++..-|.+.+++++|.++
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidl 55 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIEL 55 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 35677778888888888884444
No 312
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.53 E-value=1.9e+02 Score=24.42 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 044412 199 SWTTMITSYSQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLG 246 (311)
Q Consensus 199 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~ 246 (311)
..+.+|.-|...|+.++|.+.++++..-.+.+ ......+..+.-+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~ 265 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTG 265 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCc
Confidence 47889999999999999999999996422222 234455566665543
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.16 E-value=2.4e+02 Score=20.76 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=14.3
Q ss_pred cccCCChhHHHHHHHHHHHCCCCch
Q 044412 97 FSSLRHPLQAIAFYLYMLRAEVLLT 121 (311)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~p~ 121 (311)
+-..|++++|.++|+.-.+++.+|.
T Consensus 106 lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 106 YEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3345566666666666555555554
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.02 E-value=2.1e+02 Score=20.69 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 044412 234 TMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNL---LCWNSITEALAIHGF--AHEALGMFDRMTYENVR 308 (311)
Q Consensus 234 t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~---~~~~~li~~~~~~g~--~~~a~~~~~~M~~~g~~ 308 (311)
..+.+|.-|...|+.++|...+ +++..|.. .+..++..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl-------------~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCL-------------KELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH-------------HHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHH-------------HHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567788888888888555554 44443321 234444445554322 34456666666655543
No 315
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.62 E-value=2.5e+02 Score=20.75 Aligned_cols=104 Identities=8% Similarity=0.014 Sum_probs=53.8
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCCCCcHhHHHHHHHHH
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~~~~~~~y~~li~~~ 207 (311)
.++..+-...+.++++.|+.+. ...+.+.+..++...-...+.++.+. ...+.+-+.++|..+-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERA----VEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566666667777777776544 44444444445544434444444443 23333344455655555666666
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAH 244 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 244 (311)
++.+. .++...+.++.+. ++...=...+.++.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 66655 4455555555443 344444444444444
No 316
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.31 E-value=1.7e+02 Score=18.79 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.7
Q ss_pred CChHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHH
Q 044412 259 RSLGRSLLVFFKLREKNLLCWNSITEALAIHGFAHEAL 296 (311)
Q Consensus 259 ~~~~~a~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 296 (311)
...+.|.++++.+.+.+...|..++.++...+...-|.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHH
Confidence 34457888888888888899999999999988755443
No 317
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum}
Probab=21.29 E-value=88 Score=26.48 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHH
Q 044412 101 RHPLQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYS 147 (311)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~ 147 (311)
+..++|.++|..+...|+..+.+...+.+.|+.-=...|+.|+....
T Consensus 310 ~~~~~a~~~l~~l~~~gid~~~v~~~L~~eGv~~F~~~~~~Ll~~~~ 356 (360)
T 3r5e_A 310 NSAAEADAVFSQLEALGVDLADVFQVLETEGVDKFVASWSELLESME 356 (360)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999888888998887754
No 318
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.27 E-value=2.5e+02 Score=20.70 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=83.3
Q ss_pred CCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHHH-----HHHHHhhCCCCcHhHHHHHHHHH
Q 044412 133 SSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYARL-----AELLFNKMPAWDIRSWTTMITSY 207 (311)
Q Consensus 133 ~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~~-----a~~~~~~m~~~~~~~y~~li~~~ 207 (311)
.++..+-...+.++++.|..+. ...+.+.+..++...-...+.++.+. ...+.+.+.++|..+-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERA----VEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccH----HHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566666667777777776444 44444444455554444444555544 44455556677777777778888
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHhhCChHHHHHHHhhcCCCCchhHHHHHHHHH
Q 044412 208 SQNKQFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALDLGRGIQIYCRSLGRSLLVFFKLREKNLLCWNSITEALA 287 (311)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~li~~~~ 287 (311)
++.|+.+ +...+.++.+ .|+...-...+.++.+.|+.+....+. .-+..++..+-...+.++.
T Consensus 106 ~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~-------------~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 106 GQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLI-------------KALKDEDGWVRQSAADALG 168 (211)
T ss_dssp HHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-------------HHTTCSSHHHHHHHHHHHH
T ss_pred HHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHH-------------HHHcCCCHHHHHHHHHHHH
Confidence 8877754 4444444543 467766667777777766654222222 2222455555555566666
Q ss_pred hcCChHHHHHHHHHH
Q 044412 288 IHGFAHEALGMFDRM 302 (311)
Q Consensus 288 ~~g~~~~a~~~~~~M 302 (311)
+.+. .++...+.++
T Consensus 169 ~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKL 182 (211)
T ss_dssp HHCS-HHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHH
Confidence 6655 2333444333
No 319
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=21.11 E-value=1.4e+02 Score=20.87 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=30.7
Q ss_pred HHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 044412 206 SYSQNKQFREALDAFNKTKK-SGTGSDQVTMATVLSACAHLGALDLGRGIQ 255 (311)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~a~~~~~~~~~a~~~~ 255 (311)
.|...++++++++++..+-+ ..-.|...--.+.+.+|++ ++.+|...+
T Consensus 49 lyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~--~L~~A~~~~ 97 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGR--DLMEAQEWC 97 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhH--HHHHHHHHH
Confidence 45577899999988866622 1124777777777777776 455444443
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.96 E-value=73 Score=24.93 Aligned_cols=63 Identities=5% Similarity=0.176 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCccchHHHHHHhccCCCCCHhHHHHHHHHHHH
Q 044412 104 LQAIAFYLYMLRAEVLLTTVHGQVWKNGFSSPVFVQTAMVDNYSYSNKFFESRRVSRRLFDEMPERKFATWNTMIDAYAR 183 (311)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~li~~~~~ 183 (311)
+.+.++|..|...|+ -.--..-|...-..+-..|++.+ |..+|+.+.+........|...|..
T Consensus 131 ~~p~~if~~L~~~~I-------------G~~~AlfYe~wA~~lE~~g~~~~----A~~Vy~~Gi~~~A~P~~rL~~~~~~ 193 (223)
T 4aez_C 131 DEPVELFSFLAHHHI-------------GQESSIFYEEYANYFESRGLFQK----ADEVYQKGKRMKAKPFLRFQQKYQQ 193 (223)
T ss_dssp SCHHHHHHHHHHTTC-------------STTBHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHTCBSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCc-------------chhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCccHHHHHHHHHH
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.88 E-value=85 Score=22.98 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCChhh
Q 044412 200 WTTMITSYSQNKQFREALDAFNKTKKS--GTGSDQVTMATVLSACAHLGALDL 250 (311)
Q Consensus 200 y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~a~~~~~~~~~ 250 (311)
=-.+++.+...+..-.|.++++.+.+. +-..+..|.---|+.+...|-+..
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345677777777888999999999988 777888887777888888887763
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.68 E-value=90 Score=22.46 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHhCC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChh
Q 044412 202 TMITSYSQNK-QFREALDAFNKTKKSGTGSDQVTMATVLSACAHLGALD 249 (311)
Q Consensus 202 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~~~~~ 249 (311)
.++..+...+ ..-.|.++++.+.+.+-..+..|..--|..+...|-+.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556665555 67789999999999888888888888888898888775
No 323
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=20.61 E-value=91 Score=22.51 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=7.5
Q ss_pred hccCChhHHHHhccc
Q 044412 71 SRFHFIDYTILVFPQ 85 (311)
Q Consensus 71 ~~~g~~~~a~~~~~~ 85 (311)
++.|+.+-+..+++.
T Consensus 47 ~~~~~~~~v~~Ll~~ 61 (179)
T 3f6q_A 47 CREGRSAVVEMLIMR 61 (179)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHc
Confidence 345555555555444
Done!