BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044416
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0R4F1|PIF1_XENLA ATP-dependent DNA helicase PIF1 OS=Xenopus laevis GN=pif1 PE=2 SV=1
Length = 635
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 38/193 (19%)
Query: 33 NEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAP 92
NE + +PG+ +Y + DS D + + ++ N I+LK+GA
Sbjct: 437 NERRLQQLPGESHSYEALDS-----------DPM----LVKTINAQCPVNQQIQLKKGAQ 481
Query: 93 VMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNE----SR 148
VML +NL+ GL NG R +V + + + +N+ + R + E R
Sbjct: 482 VMLAKNLDVSRGLVNGARGVVIKFEEGN------------KNLPVVRFLCGVTEVIKPDR 529
Query: 149 WPFK------LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTT 202
W FK L+R+QLPL +A+ I+KSQG SL V + LS+ VF GQ YVA+SR
Sbjct: 530 WVFKGHGGIYLSRQQLPLKLAWAISIHKSQGMSLDCVEISLSR-VFESGQAYVALSRARN 588
Query: 203 REGLTILNADQEV 215
EGL +++ D +V
Sbjct: 589 LEGLRVMDFDPKV 601
>sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1 OS=Danio rerio GN=pif1 PE=2 SV=1
Length = 639
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 23/141 (16%)
Query: 85 IRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSP 144
++LK GA VML +NL+ GL NG R +V D G Q + R +
Sbjct: 473 LQLKVGAQVMLTKNLDVQRGLVNGARGVVV---------DFQPGN---QGLPRVRFLCGA 520
Query: 145 NE----SRWPFK------LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLY 194
E RW FK L+R+QLPL +A+ I+KSQG +L V + L++ VF GQ Y
Sbjct: 521 VEVMKRERWMFKAPGGLYLSRQQLPLKLAWAISIHKSQGMTLDCVEISLAR-VFESGQAY 579
Query: 195 VAVSRVTTREGLTILNADQEV 215
VA+SR + EGL +++ D V
Sbjct: 580 VALSRARSLEGLRVMDFDPRV 600
>sp|Q1HG60|PIF1_RAT ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus GN=Pif1 PE=2
SV=1
Length = 637
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 23/141 (16%)
Query: 85 IRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSP 144
++LK GA VML++NL GL NG R G ++ + G+ + R +
Sbjct: 469 LQLKLGAQVMLVKNLAVSRGLVNGAR------------GVVVGFESEGRGLPRVRFLCGI 516
Query: 145 NE----SRWPFK------LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLY 194
E RW + L+R+QLPL +AM I+KSQG SL V + L + VF GQ Y
Sbjct: 517 TEVIRTDRWTVQVTGGQYLSRQQLPLQLAWAMSIHKSQGMSLDCVEISLGR-VFASGQAY 575
Query: 195 VAVSRVTTREGLTILNADQEV 215
VA+SR + +GL +L+ D V
Sbjct: 576 VALSRARSLQGLRVLDFDPTV 596
>sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2
Length = 641
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 70 EFLNSLKFNGIPNHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGT 129
E ++L + ++LK GA VML++NL+ GL NG R +V G G
Sbjct: 458 ELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVV--------GFEAEGR 509
Query: 130 NIGQNVTIQRIIMSPNESRWPFK------LNRRQLPLAPCFAMMINKSQGQSLKHVGLYL 183
+ Q + + + RW + L+R+QLPL +AM I+KSQG +L V + L
Sbjct: 510 GLPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 569
Query: 184 SKQVFTHGQLYVAVSRVTTREGLTILNAD 212
+ VF GQ YVA+SR + +GL +L+ D
Sbjct: 570 GR-VFASGQAYVALSRARSLQGLRVLDFD 597
>sp|Q80SX8|PIF1_MOUSE ATP-dependent DNA helicase PIF1 OS=Mus musculus GN=Pif1 PE=1 SV=2
Length = 650
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 23/141 (16%)
Query: 85 IRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSP 144
++LK GA VML++NL GL NG R G ++ + G+ + R +
Sbjct: 482 LQLKLGAQVMLVKNLAVSRGLVNGAR------------GVVVGFESEGRGLPRVRFLCGI 529
Query: 145 NE----SRWPFK------LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLY 194
E RW + L+R+QLPL +A+ I+KSQG SL V + L + VF GQ Y
Sbjct: 530 TEVIRTDRWTVQVTGGQYLSRQQLPLQLAWAISIHKSQGMSLDCVEISLGR-VFASGQAY 588
Query: 195 VAVSRVTTREGLTILNADQEV 215
VA+SR + +GL +L+ D V
Sbjct: 589 VALSRARSLQGLRVLDFDPTV 609
>sp|A6ZM04|PIF1_YEAS7 DNA repair and recombination protein PIF1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=PIF1 PE=3 SV=1
Length = 859
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Query: 153 LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNAD 212
++R QLPL +++ I+KSQGQ+L V + L ++VF GQ YVA+SR +REGL +LN
Sbjct: 689 VSRVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQAYVALSRAVSREGLQVLNF- 746
Query: 213 QEVEDRTFIK 222
DRT IK
Sbjct: 747 ----DRTRIK 752
>sp|P07271|PIF1_YEAST DNA repair and recombination protein PIF1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PIF1 PE=1
SV=2
Length = 859
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Query: 153 LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNAD 212
++R QLPL +++ I+KSQGQ+L V + L ++VF GQ YVA+SR +REGL +LN
Sbjct: 689 VSRVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQAYVALSRAVSREGLQVLNF- 746
Query: 213 QEVEDRTFIK 222
DRT IK
Sbjct: 747 ----DRTRIK 752
>sp|Q9UUA2|PIF1_SCHPO DNA repair and recombination protein pif1, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pif1 PE=1 SV=1
Length = 805
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 154 NRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILN 210
+R Q+PL +A+ I+K+QGQ+L V + L + VF GQ YVA+SR TT+EGL +LN
Sbjct: 707 SRSQIPLILAYAISIHKAQGQTLDRVKVDLGR-VFEKGQAYVALSRATTQEGLQVLN 762
>sp|P38766|RRM3_YEAST ATP-dependent helicase RRM3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRM3 PE=1 SV=1
Length = 723
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 153 LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNAD 212
L R Q+PL C+A+ I+K+QGQ+++ + + L +++F GQ+YVA+SR T + L +LN D
Sbjct: 644 LERTQIPLMLCWALSIHKAQGQTIQRLKVDL-RRIFEAGQVYVALSRAVTMDTLQVLNFD 702
>sp|Q9QSK3|VF030_IIV6 Uncharacterized protein 030L OS=Invertebrate iridescent virus 6
GN=IIV6-030L PE=3 SV=1
Length = 530
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 156 RQLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILN 210
+Q+PL +A+ I+ QG +L + LS F HGQ+Y A+SR L I N
Sbjct: 435 KQIPLKIAYALTIHSCQGSTLDSAEVDLS-DTFEHGQVYTALSRTRDLNSLVIKN 488
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 29 VHELNEMIMNIIPGQGRTY---------FSSDSICKASANTNDEDVLYPTEFLNS--LKF 77
V +LN+ + + G+ + +S +++ + D+ + +FL+ +K
Sbjct: 250 VQDLNDSELKKLEDSGKKFINFNALIKKYSEEAVLTNKGRSRCTDLQF--KFLSDRFVKD 307
Query: 78 NGIPNHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIV 113
+ P H +R+ EGA VML N++Q+ GL NG+R ++
Sbjct: 308 STTPQH-LRVCEGAQVMLTYNIDQLSGLVNGSRGVI 342
>sp|Q196V4|VF030_IIV3 Uncharacterized protein 106R OS=Invertebrate iridescent virus 3
GN=IIV3-106R PE=3 SV=1
Length = 473
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 157 QLPLAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNAD 212
Q+PL +A+ I+ QG ++ + + L+ F GQ Y A+SRV T +GL + D
Sbjct: 403 QIPLKIAYALTIHSCQGLTIDYAIIDLN-DCFEFGQAYTALSRVKTLDGLFLKKFD 457
>sp|Q9E6R1|HELI_GAHVM Probable ATP-dependent helicase UL5 homolog OS=Gallid herpesvirus 2
(strain Chicken/Md5/ATCC VR-987) GN=MDV017 PE=3 SV=1
Length = 858
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 164 FAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTI-LNADQEVEDR 218
AM I +SQG SL+ V + + +YVA+SRVT+ + L + +N +E R
Sbjct: 781 LAMTIARSQGLSLERVAICFAHSGLKLSSVYVAMSRVTSSKYLRMNINPLRETHSR 836
>sp|P74342|FOLB_SYNY3 Probable dihydroneopterin aldolase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=folB PE=3 SV=2
Length = 118
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 9 NYSDPAYLKERAILTPKNEMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYP 68
NY+D + ++ I K +M+ +L E I + I G G+T ++ K A D D
Sbjct: 52 NYADAVAIVQKLIRESKFKMIEKLAEAIADAILGTGKTQQVKVALTKCQAPIPDFDGDVT 111
Query: 69 TEFLNS 74
E L S
Sbjct: 112 LEILRS 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,885,033
Number of Sequences: 539616
Number of extensions: 3444893
Number of successful extensions: 7536
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7505
Number of HSP's gapped (non-prelim): 20
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)