Query 044416
Match_columns 245
No_of_seqs 171 out of 1630
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0987 DNA helicase PIF1/RRM3 99.9 2.6E-23 5.6E-28 196.2 7.6 178 6-184 362-539 (540)
2 TIGR02768 TraA_Ti Ti-type conj 99.9 1.2E-22 2.7E-27 197.8 10.4 144 20-212 567-710 (744)
3 PRK13826 Dtr system oriT relax 99.9 1.7E-22 3.8E-27 200.6 10.2 151 17-213 590-740 (1102)
4 PRK13889 conjugal transfer rel 99.9 2.5E-22 5.4E-27 198.6 8.9 145 17-210 557-701 (988)
5 TIGR01448 recD_rel helicase, p 99.8 1.8E-21 4E-26 189.1 9.6 142 17-211 544-697 (720)
6 PF05970 PIF1: PIF1-like helic 99.8 1.6E-21 3.4E-26 176.3 7.3 116 1-116 249-364 (364)
7 TIGR01447 recD exodeoxyribonuc 99.8 6.7E-21 1.5E-25 180.9 11.4 140 16-212 426-571 (586)
8 PRK10875 recD exonuclease V su 99.8 9E-21 2E-25 180.5 8.9 147 15-212 437-589 (615)
9 COG0507 RecD ATP-dependent exo 99.8 4.1E-20 8.9E-25 179.9 4.9 138 20-209 526-668 (696)
10 PF02689 Herpes_Helicase: Heli 99.7 5.4E-17 1.2E-21 153.5 7.4 80 153-234 730-810 (818)
11 PRK13709 conjugal transfer nic 99.6 6.5E-16 1.4E-20 159.8 8.6 116 82-217 1330-1450(1747)
12 TIGR02760 TraI_TIGR conjugativ 99.6 4.3E-15 9.4E-20 156.7 7.6 116 82-217 1384-1501(1960)
13 PRK14712 conjugal transfer nic 99.5 3.5E-14 7.7E-19 145.6 9.1 116 82-217 1201-1321(1623)
14 PF13538 UvrD_C_2: UvrD-like h 99.5 3.8E-16 8.3E-21 116.2 -4.2 99 87-208 1-103 (104)
15 PHA03311 helicase-primase subu 99.4 1.3E-13 2.7E-18 130.8 6.4 60 154-213 741-801 (828)
16 TIGR02760 TraI_TIGR conjugativ 99.1 2.1E-10 4.5E-15 121.8 7.0 114 80-215 740-853 (1960)
17 PRK13709 conjugal transfer nic 98.4 1.3E-07 2.8E-12 99.2 3.9 131 82-233 706-839 (1747)
18 PF01443 Viral_helicase1: Vira 98.1 2.6E-06 5.6E-11 71.8 3.3 44 164-209 184-233 (234)
19 PRK10919 ATP-dependent DNA hel 97.5 2.7E-05 5.9E-10 76.0 0.4 48 164-213 553-614 (672)
20 PF13361 UvrD_C: UvrD-like hel 97.4 4.1E-05 9E-10 67.5 0.3 46 164-211 289-349 (351)
21 TIGR01075 uvrD DNA helicase II 97.3 0.00014 3E-09 71.7 2.8 47 164-212 550-611 (715)
22 TIGR01073 pcrA ATP-dependent D 97.3 0.00012 2.5E-09 72.3 1.9 47 164-212 551-612 (726)
23 PRK11773 uvrD DNA-dependent he 97.2 0.00016 3.4E-09 71.4 2.5 47 164-212 555-616 (721)
24 TIGR01074 rep ATP-dependent DN 96.9 0.00048 1E-08 67.3 1.8 47 164-212 553-613 (664)
25 PRK13909 putative recombinatio 96.8 0.001 2.2E-08 67.3 3.3 18 164-181 609-626 (910)
26 PRK11054 helD DNA helicase IV; 96.4 0.00082 1.8E-08 65.8 0.3 45 165-211 591-662 (684)
27 COG1074 RecB ATP-dependent exo 96.3 0.00073 1.6E-08 69.8 -1.1 50 163-214 744-838 (1139)
28 PF13087 AAA_12: AAA domain; P 96.2 0.0007 1.5E-08 55.6 -1.4 47 163-211 144-198 (200)
29 TIGR02785 addA_Gpos recombinat 96.2 0.0021 4.6E-08 67.0 1.9 19 164-182 784-802 (1232)
30 TIGR02784 addA_alphas double-s 95.8 0.0053 1.2E-07 63.7 2.6 19 164-182 777-795 (1141)
31 TIGR00609 recB exodeoxyribonuc 95.8 0.0026 5.6E-08 65.6 -0.0 20 163-182 653-672 (1087)
32 PRK10876 recB exonuclease V su 95.4 0.0042 9E-08 64.5 -0.1 19 164-182 737-755 (1181)
33 PRK14712 conjugal transfer nic 94.2 0.049 1.1E-06 57.8 4.1 108 82-211 574-684 (1623)
34 COG0210 UvrD Superfamily I DNA 93.9 0.01 2.2E-07 57.9 -1.5 44 166-211 558-617 (655)
35 TIGR00376 DNA helicase, putati 92.8 0.09 1.9E-06 51.3 3.2 65 163-234 554-626 (637)
36 PF09848 DUF2075: Uncharacteri 77.8 0.59 1.3E-05 42.2 -0.6 27 159-185 269-295 (352)
37 KOG2108 3'-5' DNA helicase [Re 65.4 4.2 9.1E-05 40.6 2.1 41 166-208 678-739 (853)
38 PF11515 Cul7: Mouse developme 63.9 14 0.00029 25.9 3.8 31 86-119 17-47 (78)
39 TIGR00739 yajC preprotein tran 58.9 21 0.00046 25.3 4.3 31 85-125 36-66 (84)
40 PF12148 DUF3590: Protein of u 58.3 5.9 0.00013 28.3 1.3 19 84-102 63-81 (85)
41 COG3973 Superfamily I DNA and 58.1 2.4 5.2E-05 41.0 -0.9 37 166-202 698-738 (747)
42 KOG1807 Helicases [Replication 56.0 11 0.00023 37.8 3.0 65 166-236 902-974 (1025)
43 PRK05585 yajC preprotein trans 51.8 31 0.00067 25.6 4.3 32 84-125 50-81 (106)
44 COG2139 RPL21A Ribosomal prote 51.4 31 0.00067 25.2 4.1 45 84-128 30-78 (98)
45 PRK05886 yajC preprotein trans 43.2 54 0.0012 24.6 4.4 31 85-125 37-67 (109)
46 COG1112 Superfamily I DNA and 39.3 25 0.00054 34.8 2.8 46 163-210 672-726 (767)
47 PF08247 ENOD40: ENOD40 protei 37.9 19 0.00041 15.8 0.8 11 161-171 2-12 (12)
48 PF14001 YdfZ: YdfZ protein 37.3 25 0.00054 23.6 1.6 25 86-119 9-33 (64)
49 smart00739 KOW KOW (Kyprides, 36.5 42 0.00092 17.6 2.3 25 87-117 2-26 (28)
50 COG2028 Uncharacterized conser 33.4 39 0.00085 25.7 2.4 39 68-107 12-54 (145)
51 TIGR03318 YdfZ_fam putative se 33.2 28 0.0006 23.3 1.4 25 86-119 10-34 (65)
52 PF08776 VASP_tetra: VASP tetr 31.1 32 0.0007 20.8 1.3 18 225-242 8-25 (40)
53 KOG1803 DNA helicase [Replicat 30.6 58 0.0013 31.7 3.6 47 164-212 552-606 (649)
54 PF04322 DUF473: Protein of un 29.2 1.4E+02 0.0031 22.7 4.8 34 83-118 35-68 (119)
55 CHL00141 rpl24 ribosomal prote 29.1 89 0.0019 22.1 3.5 29 84-118 6-34 (83)
56 PF02699 YajC: Preprotein tran 27.9 20 0.00043 25.2 0.0 32 84-125 34-65 (82)
57 PF14604 SH3_9: Variant SH3 do 27.5 69 0.0015 19.9 2.5 26 82-109 10-35 (49)
58 COG3972 Superfamily I DNA and 25.6 17 0.00038 34.6 -0.8 44 164-208 525-574 (660)
59 PRK12791 flbT flagellar biosyn 25.4 69 0.0015 24.8 2.6 31 83-118 3-33 (131)
60 KOG3310 Riboflavin synthase al 24.0 1.5E+02 0.0033 24.0 4.3 41 84-125 22-63 (210)
61 PRK12281 rplX 50S ribosomal pr 23.2 1.4E+02 0.003 20.7 3.6 29 84-118 4-32 (76)
62 PF09173 eIF2_C: Initiation fa 20.9 3.2E+02 0.007 19.5 5.3 49 84-139 24-74 (88)
63 PF07057 TraI: DNA helicase Tr 20.6 33 0.00072 26.3 0.0 20 195-216 1-20 (126)
64 PF11623 DUF3252: Protein of u 20.1 1.4E+02 0.003 19.2 2.7 34 88-125 3-36 (53)
No 1
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.6e-23 Score=196.17 Aligned_cols=178 Identities=50% Similarity=0.853 Sum_probs=161.3
Q ss_pred hhhhcCCccccCcceEEccchHHHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcce
Q 044416 6 IQHNYSDPAYLKERAILTPKNEMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDI 85 (245)
Q Consensus 6 ~~~~~~d~~~~~~~~iL~~tn~~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l 85 (245)
...+..|+.++....+|+|+|.+|..+|++++..+.++...|.+.+++......... ...+..++++....+++|.+.+
T Consensus 362 ~~~~~~d~~~~~~r~iL~p~~~~v~~in~~~l~~~~~~~~~~l~~~si~~~~~~~~~-~~~~~~~~ln~~~~~~lp~~~l 440 (540)
T KOG0987|consen 362 ILFEARDPNFFTERAILTPKNEDVLKINAQVLLQLNGEEKIYLSSDSIGPVDTFSDD-NLVYTREFLNSIKFSGLPNHKL 440 (540)
T ss_pred ccccccCcccccccccccCcchhHHHHHHHHHHhcccccceeeecCccccccccccc-CcccchhhhcccccccCCccce
Confidence 344667777777777999999999999999999999999999999987765544333 4566789999999999999999
Q ss_pred eeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeee
Q 044416 86 RLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFA 165 (245)
Q Consensus 86 ~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA 165 (245)
.+++|.|+|+++|+++..|++||++..|+.+....+.++++.+...|..+.++++.+.+.+.+.++...|+|||+.+|||
T Consensus 441 ~l~~G~p~mll~nl~~~~gl~~~trl~it~l~~~~~~~~~~~g~r~~~~v~i~r~~~~~~~~~~~~~~~r~qfp~~~~~a 520 (540)
T KOG0987|consen 441 SLKVGAPIMLLRNLDPKGGLCNGTRLQITLLGVFLLEARIVTGSRAGKFVLIPRFDISPSDTNLPFRMRRRQFPLSLAFA 520 (540)
T ss_pred eEeecCchHhhhccchhhhhhccchhhhhcccCcccceeeeecccccceEEecccccCccccCcccccccccccceeeee
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred eehhhhcCCccceEEEEcC
Q 044416 166 MMINKSQGQSLKHVGLYLS 184 (245)
Q Consensus 166 ~TiHKsQG~t~d~v~v~l~ 184 (245)
+|||||||+|+.+|.++++
T Consensus 521 ~~i~ksqgqsl~~v~~~l~ 539 (540)
T KOG0987|consen 521 MTINKSQGQSLEKVGLYLP 539 (540)
T ss_pred cccChhhhhhHHhhcCcCC
Confidence 9999999999999998875
No 2
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.88 E-value=1.2e-22 Score=197.85 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=109.6
Q ss_pred eEEccchHHHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccceEeeecc
Q 044416 20 AILTPKNEMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAPVMLLRNL 99 (245)
Q Consensus 20 ~iL~~tn~~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~Vml~~Nl 99 (245)
++|+|+|++|+++|..+.+.|......-.. ..+. .....+.+++|++||+++|
T Consensus 567 lIla~tn~~v~~LN~~ir~~L~~~g~l~~~---------------~~~~-----------~~~g~~~~~~GDrV~~~~N- 619 (744)
T TIGR02768 567 IMLAHTRKDVRALNEAAREALIERGELGES---------------ILFQ-----------TARGERKFAAGDRIVFLEN- 619 (744)
T ss_pred EEEcCchHhHHHHHHHHHHHHHhcCccCcC---------------ceee-----------ccCCCceecCCCEEEEEec-
Confidence 699999999999999999988754321000 0000 0013568999999999999
Q ss_pred CCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhhcCCccceE
Q 044416 100 NQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKSQGQSLKHV 179 (245)
Q Consensus 100 ~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKsQG~t~d~v 179 (245)
+.+.|++||++|+|+++....+.+++. +|..+.++...+ -+|.+|||+|||||||+|+|.|
T Consensus 620 ~~~~gv~NGd~g~V~~i~~~~i~v~~~----~G~~v~~~~~~~---------------~~l~laYA~TvHKsQGst~~~v 680 (744)
T TIGR02768 620 NRDLGVKNGMLGTVEEIEDGRLVVQLD----SGELVIIPQAEY---------------DALDHGYATTIHKSQGVTVDRA 680 (744)
T ss_pred ccccCCcCCCEEEEEEecCCeEEEEEC----CCCEEEECHHHh---------------CccCceEEeccccccCCccCcE
Confidence 888999999999999998766655542 344444432111 2589999999999999999999
Q ss_pred EEEcCCCcCcCCCeEEEeecccCCCCcEEEecC
Q 044416 180 GLYLSKQVFTHGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 180 ~v~l~~~~~~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
++..+ .+++.+++|||+||+| +.+.|+...
T Consensus 681 iv~~~-~~l~r~llYvAiTRar--~~~~l~~~~ 710 (744)
T TIGR02768 681 FVLAS-KSMDRHLAYVAMTRHR--ESVQLYAGK 710 (744)
T ss_pred EEecC-Cccccchhhhhhhccc--ceeEEEEch
Confidence 99754 5889999999999999 688888753
No 3
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.87 E-value=1.7e-22 Score=200.64 Aligned_cols=151 Identities=25% Similarity=0.287 Sum_probs=110.6
Q ss_pred CcceEEccchHHHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccceEee
Q 044416 17 KERAILTPKNEMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAPVMLL 96 (245)
Q Consensus 17 ~~~~iL~~tn~~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~Vml~ 96 (245)
++.++|+|+|++|+++|..+.+.|......-... .+.. . .....+++|++||++
T Consensus 590 ~~~lILa~tn~~v~~LN~~iR~~L~~~G~L~~~~---------------~~~~-------~----~G~r~f~vGDrV~f~ 643 (1102)
T PRK13826 590 KTTLILAHLRRDVRMLNEMARAKLVERGIVGEGH---------------AFRT-------A----DGERRFAAGDQIVFL 643 (1102)
T ss_pred cceEEECCchHHHHHHHHHHHHHhhhccCCCcCc---------------eeee-------c----cCCccccCCCEEEEe
Confidence 4678999999999999999999886543211000 0000 0 123568999999999
Q ss_pred eccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhhcCCcc
Q 044416 97 RNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKSQGQSL 176 (245)
Q Consensus 97 ~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKsQG~t~ 176 (245)
+| +.+.|+.||++|+|+++..+.+.+.+..|+ .+..+.++.-.+ -.+.+|||+|||||||+|+
T Consensus 644 rN-d~~lgV~NGd~GtV~~i~~~~i~v~~d~g~-~~r~V~~~~~~~---------------~~ldhaYA~TVHKSQGsT~ 706 (1102)
T PRK13826 644 KN-EGSLGVKNGMIGKVVEAAPNRIVAEIGEGE-HRRQVTVEQRFY---------------NNLDHGYATTIHKSQGATV 706 (1102)
T ss_pred ee-cCccCccCCCeEEEEEecCCeEEEEEcCCC-CceEEEechhhc---------------cchhheeeeeeeccccccc
Confidence 99 889999999999999998776666553221 223333321111 0288999999999999999
Q ss_pred ceEEEEcCCCcCcCCCeEEEeecccCCCCcEEEecCC
Q 044416 177 KHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNADQ 213 (245)
Q Consensus 177 d~v~v~l~~~~~~~g~~YvAlSR~~~~~~l~i~~~~~ 213 (245)
|+|+|..+ ..++.+++|||+||+| +.+.|+..+.
T Consensus 707 d~V~vl~s-~~ldR~llYVA~TRaR--~~~~ly~~~~ 740 (1102)
T PRK13826 707 DRVKVLAS-LSLDRHLTYVAMTRHR--EDLQLYYGRR 740 (1102)
T ss_pred ceEEEecc-cccccchhHHhhcccc--ceEEEEEchh
Confidence 99999865 4789999999999999 6888877654
No 4
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.87 E-value=2.5e-22 Score=198.59 Aligned_cols=145 Identities=23% Similarity=0.293 Sum_probs=108.2
Q ss_pred CcceEEccchHHHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccceEee
Q 044416 17 KERAILTPKNEMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAPVMLL 96 (245)
Q Consensus 17 ~~~~iL~~tn~~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~Vml~ 96 (245)
.+.++|+|+|.+|+.+|..+.+.|...... ..+. .+.. . .....+++|++||++
T Consensus 557 ~~~lVLaptn~~v~~LN~~iR~~L~~~G~l--g~~~-------------~~~~------~-----~g~r~~~vGDrVm~~ 610 (988)
T PRK13889 557 RSRIILTHTNDEVRALNEAARERMRAAGDL--GDDV-------------RVTV------E-----RGERSFASGDRVMFL 610 (988)
T ss_pred ccEEEEcCCcccHHHHHHHHHHHhhccCCc--cccc-------------eecc------c-----cCCccccCCCEEEEe
Confidence 467899999999999999999988654321 0000 0000 0 123568999999999
Q ss_pred eccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhhcCCcc
Q 044416 97 RNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKSQGQSL 176 (245)
Q Consensus 97 ~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKsQG~t~ 176 (245)
+| +.+.|++||++|+|+++..+.+.+++. +|..+.++.-.+ -.|.+|||+|||||||+|+
T Consensus 611 rN-d~~lgV~NGd~GtV~~I~~~~i~V~~d----~gr~V~~~~~~~---------------~~ldlaYA~TIHKSQGsT~ 670 (988)
T PRK13889 611 QN-ERGLGVKNGTLGTIEQVSAQSMSVRLD----DGRSVAFDLKDY---------------DRIDHGYAATIHKAQGMTV 670 (988)
T ss_pred ec-CCcCCEeCCCeEEEEEecCCeEEEEEC----CCeEEEecHHHc---------------CcccchhhhhhHHhcCCCC
Confidence 99 889999999999999998776665542 344443321111 1388999999999999999
Q ss_pred ceEEEEcCCCcCcCCCeEEEeecccCCCCcEEEe
Q 044416 177 KHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILN 210 (245)
Q Consensus 177 d~v~v~l~~~~~~~g~~YvAlSR~~~~~~l~i~~ 210 (245)
|.|++.... .++..++|||+||+| +.+.|..
T Consensus 671 d~V~vl~~~-~~~r~l~YVAiTRar--~~v~l~~ 701 (988)
T PRK13889 671 DRTHVLATP-GMDAHSSYVALSRHR--DGVDLHY 701 (988)
T ss_pred CeEEEeccc-ccccchhHHhhhhhh--heEEEEe
Confidence 999987654 678889999999999 5777765
No 5
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.85 E-value=1.8e-21 Score=189.07 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=101.4
Q ss_pred CcceEEccch---HHHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccce
Q 044416 17 KERAILTPKN---EMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAPV 93 (245)
Q Consensus 17 ~~~~iL~~tn---~~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~V 93 (245)
++..+|||.+ ..++++|+.+.+.+........ . +......+++|+||
T Consensus 544 ~d~qVL~p~~~g~~Gv~~lN~~lq~~lnp~~~~~~-----------------~-------------~~~~~~~~~~GDkV 593 (720)
T TIGR01448 544 ADIQVLAPMYKGPLGIDALNQHLQALLNPYQKGQG-----------------G-------------IEIAEGEYRKGDRV 593 (720)
T ss_pred hHeeEeCccccCccCHHHHHHHHHHHhCccCCCCc-----------------e-------------eecCCceecCCCEE
Confidence 4677888875 3578899887776644211000 0 00134578999999
Q ss_pred EeeeccCCCCCeeecceEEEEecCCcc------eEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeee
Q 044416 94 MLLRNLNQIEGLCNGTRLIVTRLGKWS------IRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMM 167 (245)
Q Consensus 94 ml~~Nl~~~~gl~NG~~g~V~~i~~~~------~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~T 167 (245)
|+++| +.+.|++||++|+|.++..+. +.+.+ +|..+.++.-.+ -.+.+|||+|
T Consensus 594 m~~~N-~~~~~v~NGdiG~I~~i~~~~~~~~~~i~v~f-----~g~~v~~~~~~~---------------~~l~lAYAiT 652 (720)
T TIGR01448 594 MQTKN-DYNNEIFNGDLGMIVKIEGAKQGKKDQVVVDF-----DGNEVELTRAEL---------------FNLTLAYATS 652 (720)
T ss_pred EEeee-cchhccccCCeeEEEeccccccCCCceEEEEE-----CCeEEEEcHHHh---------------hhhhhhheee
Confidence 99999 899999999999999986532 22222 343333321111 1389999999
Q ss_pred hhhhcCCccceEEEEcCC---CcCcCCCeEEEeecccCCCCcEEEec
Q 044416 168 INKSQGQSLKHVGLYLSK---QVFTHGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 168 iHKsQG~t~d~v~v~l~~---~~~~~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
||||||++++.|++.++. .++++.++|||+||+| +.|.|++.
T Consensus 653 vHKsQGSe~~~Vii~l~~~~~~~l~r~llYTAiTRAk--~~l~lvg~ 697 (720)
T TIGR01448 653 IHKSQGSEFPTVILPIHTAHMRMLYRNLLYTALTRAK--KRVILVGS 697 (720)
T ss_pred ehhccCccCCEEEEECCcccchhhhhchheeeeeeec--eEEEEEEC
Confidence 999999999999998653 4578999999999999 68888874
No 6
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=99.84 E-value=1.6e-21 Score=176.31 Aligned_cols=116 Identities=51% Similarity=0.874 Sum_probs=105.2
Q ss_pred CCccchhhhcCCccccCcceEEccchHHHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCC
Q 044416 1 NIYPSIQHNYSDPAYLKERAILTPKNEMVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGI 80 (245)
Q Consensus 1 ~~y~~~~~~~~d~~~~~~~~iL~~tn~~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 80 (245)
.+||++.+...+++++.++++|+|+|++|+++|++++++|+|+..+|.|.|.+.......+......+.+++++++.+++
T Consensus 249 ~v~~~~~~~~~~~~~~~~~~iL~~~n~~V~~iN~~~L~~L~g~~~~y~A~D~i~~~~~~~~~~~~~~~~e~~~~l~~~~~ 328 (364)
T PF05970_consen 249 EVFPDILQNSNNPDYFKDRAILAPTNDDVDEINEYILSRLPGEEKTYYAIDSIDKSDENSKDDDNKYPTEFLNSLKKSGL 328 (364)
T ss_pred hhcccccccccCchhccceeeeccceeeehHhHHhhhhhhccccceeeeeeccccccccccchhhhccHHHHhhhhhccC
Confidence 36899888889999999999999999999999999999999999999999997766554444455677899999999999
Q ss_pred CCcceeeeeccceEeeeccCCCCCeeecceEEEEec
Q 044416 81 PNHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRL 116 (245)
Q Consensus 81 ~~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i 116 (245)
||+.|.||+|++|||++|++.+.|||||++|+|+++
T Consensus 329 ~~~~L~LkiGa~VMLlrNld~~~gLvNGt~g~V~~~ 364 (364)
T PF05970_consen 329 PPHELKLKIGARVMLLRNLDVERGLVNGTRGVVVGF 364 (364)
T ss_pred chhheeecCCcEEEEEecccccCCeEcCcEEEEEeC
Confidence 999999999999999999999999999999999875
No 7
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.84 E-value=6.7e-21 Score=180.92 Aligned_cols=140 Identities=24% Similarity=0.273 Sum_probs=103.3
Q ss_pred cCcceEEccchHH---HHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccc
Q 044416 16 LKERAILTPKNEM---VHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAP 92 (245)
Q Consensus 16 ~~~~~iL~~tn~~---v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~ 92 (245)
+++..+|||.+.. |+.+|+.+.+.+...... +..-.+.+|+|
T Consensus 426 ~~~~qvL~~~r~G~~Gv~~LN~~lq~~l~~~~~~-----------------------------------~~~~~~~~Gd~ 470 (586)
T TIGR01447 426 FDRLRLLTALRDGPFGVLGLNRRIEQELQEKYFD-----------------------------------PDEEGWYIGRP 470 (586)
T ss_pred cccEEEECeeeCCcHhHHHHHHHHHHHhCcccCC-----------------------------------CCCceeecCCe
Confidence 5689999999885 999999999888643210 01224568999
Q ss_pred eEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhhc
Q 044416 93 VMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKSQ 172 (245)
Q Consensus 93 Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKsQ 172 (245)
||+++| |.+.|++||++|+|...... +.+.+.. .+|. +.++.-.+ -.+.+|||+||||||
T Consensus 471 Vm~t~N-d~~~gl~NGdiG~i~~~~~~-~~v~f~~--~~g~-~~~~~~~l---------------~~~~~ayA~TvHKSQ 530 (586)
T TIGR01447 471 IMVTEN-DYTLGLFNGDIGVLLRDPDG-LTVWFHF--ADGS-KAVLPSRL---------------PNYETAFAMTVHKSQ 530 (586)
T ss_pred EEEeec-CcccCcCCCCeEEEEEeCCc-EEEEEEc--CCCe-EEechHHc---------------CccceEEEEEeeHhc
Confidence 999999 89999999999999876432 3333321 1232 22211111 127889999999999
Q ss_pred CCccceEEEEcCC---CcCcCCCeEEEeecccCCCCcEEEecC
Q 044416 173 GQSLKHVGLYLSK---QVFTHGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 173 G~t~d~v~v~l~~---~~~~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
|++++.|++.++. .+++..++|||+||+| +.+.|+..+
T Consensus 531 Gsef~~Vi~~l~~~~~~~l~r~llYTaiTRAk--~~l~i~~~~ 571 (586)
T TIGR01447 531 GSEFDHVILILPNGNSPVLTRELLYTGITRAK--DQLSVWSDK 571 (586)
T ss_pred CCcCCeEEEECCCCCCcccccceeEEEeeehh--CeEEEEECH
Confidence 9999999998864 4578889999999999 688888843
No 8
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.83 E-value=9e-21 Score=180.52 Aligned_cols=147 Identities=27% Similarity=0.324 Sum_probs=105.5
Q ss_pred ccCcceEEccchHH---HHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeecc
Q 044416 15 YLKERAILTPKNEM---VHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGA 91 (245)
Q Consensus 15 ~~~~~~iL~~tn~~---v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~ 91 (245)
.+++..+|||.+.. |+.+|+.+.+.|...... ... . .....+.+|+
T Consensus 437 ~~~~~qvL~~~r~G~~Gv~~LN~~lq~~l~~~~~~---~~~------------------~----------~~~~~~~~Gd 485 (615)
T PRK10875 437 AFNRYQLLCALREGPFGVAGLNERIEQALQQKRLI---RRP------------------S----------GPHSRWYEGR 485 (615)
T ss_pred hhhcEEEeCcccCCcHHHHHHHHHHHHHhCccccC---ccc------------------c----------CCCccccCCC
Confidence 35688999999874 999999988887553210 000 0 0012467899
Q ss_pred ceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhh
Q 044416 92 PVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKS 171 (245)
Q Consensus 92 ~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKs 171 (245)
|||+++| |++.|++||++|+|.+.....+.+.+. ..+|..+.++.-.+ -.+.+|||+|||||
T Consensus 486 ~Vm~t~N-d~~~gl~NGdiG~v~~~~~~~l~v~f~--~~~g~~~~~~~~~l---------------~~~~~ayA~TVHKS 547 (615)
T PRK10875 486 PVMIARN-DSALGLFNGDIGIALDRGQGELRVWFQ--LPDGNIKSVQPSRL---------------PEHETAWAMTVHKS 547 (615)
T ss_pred EEEEeec-CcccCcccCceEEEeecCCCeEEEEEE--CCCCcEEEechHhc---------------cccceEEEEehhhh
Confidence 9999999 899999999999999776543444332 12333333222111 13788999999999
Q ss_pred cCCccceEEEEcCC---CcCcCCCeEEEeecccCCCCcEEEecC
Q 044416 172 QGQSLKHVGLYLSK---QVFTHGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 172 QG~t~d~v~v~l~~---~~~~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
||++++.|++.++. ..+...++|||+||+| +.+.|++.+
T Consensus 548 QGsEf~~Vilvlp~~~~~~l~R~LlYTaiTRAk--~~l~l~~~~ 589 (615)
T PRK10875 548 QGSEFDHTALVLPNQFTPVVTRELVYTAITRAR--RRLSLYADE 589 (615)
T ss_pred cCCCCCeEEEECCCccchhhhhhhHHhhhhhhh--ceEEEEeCH
Confidence 99999999998874 3467889999999999 688888754
No 9
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=99.79 E-value=4.1e-20 Score=179.89 Aligned_cols=138 Identities=26% Similarity=0.397 Sum_probs=99.7
Q ss_pred eEEccchHH---HHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccceEee
Q 044416 20 AILTPKNEM---VHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAPVMLL 96 (245)
Q Consensus 20 ~iL~~tn~~---v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~Vml~ 96 (245)
.+|||-++. |..+|..+.+.+...... +. .....+.+|+|||++
T Consensus 526 ~~L~~m~~g~~Gv~~lN~~lq~~l~~~~~~----~~-----------------------------~~~~~~~~Gd~vm~~ 572 (696)
T COG0507 526 QVLAPMRKGPLGVAKLNQALQALLNPKGDL----DR-----------------------------RGLREFREGDKVMQL 572 (696)
T ss_pred HhhhhhhcCcccHHHHHHHHHHHhCCCccc----cc-----------------------------ccccceecCCeeEEe
Confidence 345665554 888888888777554332 00 024456789999999
Q ss_pred eccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhhcCCcc
Q 044416 97 RNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKSQGQSL 176 (245)
Q Consensus 97 ~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKsQG~t~ 176 (245)
+| +...|++||++|++..+...... .......+|..+.++ .+.+.++.+|||||||||||+|+
T Consensus 573 ~N-~~~~~vfNGdiG~~~~~~~~~~~-~~~~~~~dg~~~~~~---------------~~~~~~~~~ayA~TIHKsQGSef 635 (696)
T COG0507 573 RN-DRALGVFNGDIGVILSIVKRRQG-DVLVVDFDGREVVVA---------------RSELPELELAYAMTIHKSQGSEF 635 (696)
T ss_pred ec-ccccceecCccceEEeeccccCc-eEEEEecCCCEEEEe---------------hhhhhhhhhheeeeEecccCCCC
Confidence 99 78889999999999997554322 222233445433332 23556799999999999999999
Q ss_pred ceEEEEcCC--CcCcCCCeEEEeecccCCCCcEEE
Q 044416 177 KHVGLYLSK--QVFTHGQLYVAVSRVTTREGLTIL 209 (245)
Q Consensus 177 d~v~v~l~~--~~~~~g~~YvAlSR~~~~~~l~i~ 209 (245)
|+|++.+++ ++++.+++|||+||+|. .+.+.
T Consensus 636 ~~v~v~l~~~~~~l~r~l~YtAiTRar~--~l~l~ 668 (696)
T COG0507 636 DRVIVLLPSHSPMLSRELLYTAITRARD--RLILY 668 (696)
T ss_pred CeEEEEcCCCchhhhhhHHHHHhhhhhe--eEEEE
Confidence 999999885 37899999999999995 44444
No 10
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=99.68 E-value=5.4e-17 Score=153.45 Aligned_cols=80 Identities=46% Similarity=0.669 Sum_probs=64.5
Q ss_pred eeeeccCcceeeeeehhhhcCCccceEEEEcCCC-cCcCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHh
Q 044416 153 LNRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQ-VFTHGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQ 231 (245)
Q Consensus 153 ~~r~q~Pl~~ayA~TiHKsQG~t~d~v~v~l~~~-~~~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~ 231 (245)
..+.|||+.++||||||||||+|+++|.|++++. .|.+||+||||||+++++||++ ..++.+.... ..+.+-+-++.
T Consensus 730 ~t~~qfpi~~~~AmTIhKSQG~SL~kV~i~l~~~~~F~~gq~YVAlSRvts~~~L~i-~~nPlr~~~~-~~~~is~~i~~ 807 (818)
T PF02689_consen 730 CTRVQFPISSAFAMTIHKSQGQSLDKVAIDLGKPKVFSHGQLYVALSRVTSLEGLKI-NFNPLREMHE-NDTKISKHILR 807 (818)
T ss_pred eeecCCcceeeEEEEEeHhhccccceEEEECCCCcccCCCceEEEEEeeccccccEE-ecCccccccc-CccchHHHHHH
Confidence 6789999999999999999999999999999986 8999999999999999999976 4445443332 34444445555
Q ss_pred hHh
Q 044416 232 NIH 234 (245)
Q Consensus 232 ~~~ 234 (245)
.||
T Consensus 808 AL~ 810 (818)
T PF02689_consen 808 ALR 810 (818)
T ss_pred Hhc
Confidence 543
No 11
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.62 E-value=6.5e-16 Score=159.77 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=85.8
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcc
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLA 161 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~ 161 (245)
++.+.|.+||+|+|++| |...|+.||++++|.+++.+.+... .+ .+ ...+ .+... ...--+.
T Consensus 1330 ~~~~ela~GDrIr~Trn-Dk~~G~~Ng~~~tV~~I~~~~I~l~--~~--~~-~~~l-----~~~~~-------~~~~hlD 1391 (1747)
T PRK13709 1330 PDTIRVGTGDRMRFTKS-DRERGYVANSVWTVTAVSGDSVTLS--DG--QQ-TRVI-----RPGQE-------RAEQHID 1391 (1747)
T ss_pred cccccccCCCEEEEccc-CcccccccCCEEEEEEEcCCeEEEE--cC--Cc-eEEe-----cccch-------hhhhhhh
Confidence 46789999999999999 8899999999999999987653322 11 12 2111 11100 0112278
Q ss_pred eeeeeehhhhcCCccceEEEEcCC-----CcCcCCCeEEEeecccCCCCcEEEecCCCCcc
Q 044416 162 PCFAMMINKSQGQSLKHVGLYLSK-----QVFTHGQLYVAVSRVTTREGLTILNADQEVED 217 (245)
Q Consensus 162 ~ayA~TiHKsQG~t~d~v~v~l~~-----~~~~~g~~YvAlSR~~~~~~l~i~~~~~~~~~ 217 (245)
+|||.|+|+|||+|.++|++..+. ...+...+|||+||+| +.+.|+..|.++..
T Consensus 1392 ~gYA~T~h~AQG~T~~~vi~~~~~~~~~~~l~~~~~fYVaiSRar--~~l~IyTDd~e~L~ 1450 (1747)
T PRK13709 1392 LAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMK--QHVQVYTDNRQGWT 1450 (1747)
T ss_pred hhhhhhhhhhcccccceEEEEeccccccccccchhhhhhcccccc--cceEEEEcCHHHHH
Confidence 899999999999999999987542 2456778999999999 69999998876543
No 12
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.56 E-value=4.3e-15 Score=156.66 Aligned_cols=116 Identities=11% Similarity=0.184 Sum_probs=88.4
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcc
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLA 161 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~ 161 (245)
++.+.|..|++|+|++| |.+.|+.||++++|.++..+.+.+.. ..+..+.++.-.. ..--+.
T Consensus 1384 ~~~~~l~~GDri~~t~~-d~~~g~~n~~~~~V~~v~~~~~~~~~----~~~~~~~l~~~~~-------------~~~h~d 1445 (1960)
T TIGR02760 1384 DSELPLAKGDKIRLRAT-DKNRGIKANEVYTVTQVVNGLSVQLS----KVKNSLSLKPIQA-------------KDKHWD 1445 (1960)
T ss_pred cccccccCCCEEEEeec-CcccccccCCeEEEEEEcCCcEEEEc----CCCceEEecCchh-------------hhhccc
Confidence 46889999999999999 89999999999999999765544332 2343433321110 011278
Q ss_pred eeeeeehhhhcCCccceEEEEcCCC--cCcCCCeEEEeecccCCCCcEEEecCCCCcc
Q 044416 162 PCFAMMINKSQGQSLKHVGLYLSKQ--VFTHGQLYVAVSRVTTREGLTILNADQEVED 217 (245)
Q Consensus 162 ~ayA~TiHKsQG~t~d~v~v~l~~~--~~~~g~~YvAlSR~~~~~~l~i~~~~~~~~~ 217 (245)
+|||.|+|+|||+|.|+|++.+++. .....++||++||+| +.+.|+..|.++..
T Consensus 1446 ~~YA~T~h~aQG~T~~~vi~~~~s~~~l~~~~~~YVaiSRar--~~~~iyTd~~~~l~ 1501 (1960)
T TIGR02760 1446 YAYTRTADSAQGATYTFVIALIKGRLALTNYRSAYIDLTRAS--HHVELYTDNKEGTV 1501 (1960)
T ss_pred hhhhhhhhhhcccccceEEEEecchhhhhhhhhHhhhhhhcc--cceEEEeCCHHHHH
Confidence 8999999999999999999987652 345678999999999 79999998776543
No 13
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.51 E-value=3.5e-14 Score=145.55 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=86.0
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcc
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLA 161 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~ 161 (245)
++.+.|.+||+|+|++| |...|++||++++|+++..+.+... +|..... +.+.+. ....-+.
T Consensus 1201 ~~~~ela~GD~Ir~Trn-D~~~G~~Ng~~~tV~~i~~~~i~l~------~g~~~~~----i~~~~~-------~~~~hlD 1262 (1623)
T PRK14712 1201 PDTIRVGTGDRIRFTKS-DRERGYVANSVWTVTAVSGDSVTLS------DGQQTRV----IRPGQE-------RAEQHID 1262 (1623)
T ss_pred ccccccCCCCEEEEccC-CcccccccCceEEEEEEcCCeEEEe------cCceeEe----ecCccc-------chhhhhh
Confidence 57899999999999999 8999999999999999987644332 2222111 011000 0112278
Q ss_pred eeeeeehhhhcCCccceEEEEcCC----Cc-CcCCCeEEEeecccCCCCcEEEecCCCCcc
Q 044416 162 PCFAMMINKSQGQSLKHVGLYLSK----QV-FTHGQLYVAVSRVTTREGLTILNADQEVED 217 (245)
Q Consensus 162 ~ayA~TiHKsQG~t~d~v~v~l~~----~~-~~~g~~YvAlSR~~~~~~l~i~~~~~~~~~ 217 (245)
+|||.|.|.|||+|.+.|+...+. .. .....+||++||++ +.+.|+..|.++..
T Consensus 1263 ~aYA~Tah~AQG~T~~~vI~~~~s~~~~~~lt~~rsfYVaiSRAr--~~v~IYTDd~~~l~ 1321 (1623)
T PRK14712 1263 LAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMK--QHVQVYTDNRQGWT 1321 (1623)
T ss_pred hhhhhhhhhccCCccceEEEecccccchhhcccchhheeeeeecc--ceEEEEECCHHHHH
Confidence 899999999999999999886543 12 35678899999999 69999998876553
No 14
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.50 E-value=3.8e-16 Score=116.19 Aligned_cols=99 Identities=20% Similarity=0.333 Sum_probs=61.5
Q ss_pred eeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeee
Q 044416 87 LKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAM 166 (245)
Q Consensus 87 l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~ 166 (245)
+++|++|+++.| +...+++||..+.+..+...... ...+..+.... ...++...++||+
T Consensus 1 ~~~gD~vv~~~n-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------~~~~~~~~~~~~~ 59 (104)
T PF13538_consen 1 FRPGDKVVITRN-DSEQAVFNGDLGKIEDIYEEEEK------DDDKKRVRVDD--------------DENSYQVSHAYAM 59 (104)
T ss_dssp --TT-EEEE-CT-BTTTCECCCCHHHHHHHHHCCH--------TTCCEEEECC--------------CCCCCTCCCCSEE
T ss_pred CcCcCEEEEEee-CCcCCeecCceEEEecccccccc------cccccEEEecc--------------cccccccCcEEEE
Confidence 468999999999 78889999999988765321000 01111111100 0112223379999
Q ss_pred ehhhhcCCccceEEEEcCCCc----CcCCCeEEEeecccCCCCcEE
Q 044416 167 MINKSQGQSLKHVGLYLSKQV----FTHGQLYVAVSRVTTREGLTI 208 (245)
Q Consensus 167 TiHKsQG~t~d~v~v~l~~~~----~~~g~~YvAlSR~~~~~~l~i 208 (245)
|+|||||+++|.|++..+... ....++|||+||++ ..|.|
T Consensus 60 Tih~akGle~d~V~v~~~~~~~~~~~~~~~lYva~TRA~--~~L~i 103 (104)
T PF13538_consen 60 TIHKAKGLEFDAVIVVDPDSSNFDELSRRLLYVAITRAK--HELYI 103 (104)
T ss_dssp ETGGCTT--EEEEEEEEGGGGSGCGCHHHHHHHHHTTEE--EEEEE
T ss_pred EhHHhcCccccEEEEEcCCcccCCchhhccEEeeHhHhh--hhhCC
Confidence 999999999999999876533 23457999999999 45554
No 15
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=99.44 E-value=1.3e-13 Score=130.78 Aligned_cols=60 Identities=30% Similarity=0.369 Sum_probs=53.6
Q ss_pred eeeccCcceeeeeehhhhcCCccceEEEEcCCC-cCcCCCeEEEeecccCCCCcEEEecCC
Q 044416 154 NRRQLPLAPCFAMMINKSQGQSLKHVGLYLSKQ-VFTHGQLYVAVSRVTTREGLTILNADQ 213 (245)
Q Consensus 154 ~r~q~Pl~~ayA~TiHKsQG~t~d~v~v~l~~~-~~~~g~~YvAlSR~~~~~~l~i~~~~~ 213 (245)
...-+-|.++||||||||||+|+++|.|+++++ .|.+||+|||+||+++.+||++.....
T Consensus 741 tt~DYGi~~~~AmTI~KSQG~sL~~V~i~f~~~k~~~~gq~YVAlSR~~s~~~L~i~~np~ 801 (828)
T PHA03311 741 TTVDYGISSKLAMTIAKSQGLSLDKVAICFGNHKNLKLSHVYVAMSRVTSSNFLVMNLNPL 801 (828)
T ss_pred eecccccchhheeeehHhhCCccceEEEECCCccccccCcEEEEEEeccCccccEEecCCc
Confidence 344566899999999999999999999999876 899999999999999999998877644
No 16
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.06 E-value=2.1e-10 Score=121.80 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=84.9
Q ss_pred CCCcceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccC
Q 044416 80 IPNHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLP 159 (245)
Q Consensus 80 l~~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~P 159 (245)
.++..+.|..|+++|+++| +...|+.||++++|.++....+.++. .+|+...++.-. ....+
T Consensus 740 y~~~~l~ia~Gdrl~~trn-~~~~gl~ng~~~tV~~i~~~~i~l~~----~~g~~~~L~~~~-------------~~~~~ 801 (1960)
T TIGR02760 740 YRPEQLEVAAGERLQVTGN-HFHSRVRNGELLTVSSINNEGITLIT----EDGQTLHLPHGA-------------LEDAH 801 (1960)
T ss_pred eccccccccCCCEEEEccC-CcccCccCCCEEEEEEEcCCeEEEEe----CCCceEEccCCC-------------ccccc
Confidence 4467899999999999999 67889999999999999876554443 234333332110 02345
Q ss_pred cceeeeeehhhhcCCccceEEEEcCCCcCcCCCeEEEeecccCCCCcEEEecCCCC
Q 044416 160 LAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNADQEV 215 (245)
Q Consensus 160 l~~ayA~TiHKsQG~t~d~v~v~l~~~~~~~g~~YvAlSR~~~~~~l~i~~~~~~~ 215 (245)
|.+|||.|.|+|||+|.+.+++. .... ....+|++|||++ ..|.|+..|.++
T Consensus 802 ldh~Ya~T~h~aQG~T~~~~~~~-~~~~-~~~~~~~~lsRa~--~~l~IyTd~~~~ 853 (1960)
T TIGR02760 802 LDYGYVLTPYHTQPDDAKVFLGV-KQYA-LSKALLNSLNRSA--SRVDLFTDLDEK 853 (1960)
T ss_pred ccccccCCCcccCCCcceEEEEe-cchh-hhHHHHHHHhhCc--ceeEEEECCHHH
Confidence 89999999999999999866654 2222 4445799999999 599999988765
No 17
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=98.44 E-value=1.3e-07 Score=99.18 Aligned_cols=131 Identities=12% Similarity=0.124 Sum_probs=88.5
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcc
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLA 161 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~ 161 (245)
++.+.|++|++|++|+| +...||.||++++|++++...+.++.. ..|+.+.++.-.. ...-.||.
T Consensus 706 ~~~ieiA~GDrLr~T~n-d~~~~l~Ngd~~tV~~i~~~~i~l~~~---~~gk~~~L~~~~~-----------~~~~~~ld 770 (1747)
T PRK13709 706 PEKMPVADGERLRVLGK-IPGLRLKGGDRLQVTSVSEDGLTVVVP---GRAEPATLPVDDS-----------PFTALKLE 770 (1747)
T ss_pred ccccccCCCCEEEEccC-CcccCccCCCEEEEEEecCCeEEEEEC---CCceEEEeCCccc-----------ccccCcee
Confidence 57899999999999999 889999999999999998876655431 1233333311100 01124689
Q ss_pred eeeeeehhhhcCCccceEEE--EcCCCcCcCCCeEEEeecccCCCCcEEEec-CCCCcccccccceehHHHHhhH
Q 044416 162 PCFAMMINKSQGQSLKHVGL--YLSKQVFTHGQLYVAVSRVTTREGLTILNA-DQEVEDRTFIKNIVYKEVFQNI 233 (245)
Q Consensus 162 ~ayA~TiHKsQG~t~d~v~v--~l~~~~~~~g~~YvAlSR~~~~~~l~i~~~-~~~~~~~~~~~n~~~~~~~~~~ 233 (245)
+|||.|.|.+ |-+++++ ...+..++. .+||++||.+ ..+.|+.. |.++......++...+.....|
T Consensus 771 haYa~T~~~a---t~~~~~v~~~~~~~~~s~-~~~v~ltrs~--~~l~IyTd~d~~kl~~~l~r~~~~~sa~e~v 839 (1747)
T PRK13709 771 HGWVETPGHS---VSDSATVFASVTQRAMDN-ATLNGLARSG--RDVRLYSSLDETRTAEKLARHPSFTVVSEQI 839 (1747)
T ss_pred eeeecccccc---cCceeEEEEecCchhhhH-HHHHHHhhcc--ceEEEEcCCCHHHHHHHHHhccccccHHHHH
Confidence 9999999999 4455544 444433333 4599999998 49999997 7765554455555554444444
No 18
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.07 E-value=2.6e-06 Score=71.81 Aligned_cols=44 Identities=34% Similarity=0.583 Sum_probs=36.2
Q ss_pred eeeehhhhcCCccceEEEEcCCC----cC--cCCCeEEEeecccCCCCcEEE
Q 044416 164 FAMMINKSQGQSLKHVGLYLSKQ----VF--THGQLYVAVSRVTTREGLTIL 209 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~~----~~--~~g~~YvAlSR~~~~~~l~i~ 209 (245)
-++|+|.|||+|+|+|.+.+... .+ +...+||||||++ .+|.|+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~~~~~~~~~~~~~VALTR~~--~~l~i~ 233 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTDNELYSESRNHLYVALTRHT--KSLVIL 233 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCcccccccCCcccEEEEccccc--cEEEEE
Confidence 48999999999999999887643 12 3679999999999 677765
No 19
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.49 E-value=2.7e-05 Score=76.05 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=37.6
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcCc-------------CCCeEEEeecccCCCCcEEEecCC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVFT-------------HGQLYVAVSRVTTREGLTILNADQ 213 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~~-------------~g~~YvAlSR~~~~~~l~i~~~~~ 213 (245)
--||||+|+|++||.|+|. +..+.|. ..++|||+||++ +.|+|.....
T Consensus 553 ~L~TiH~sKGLEf~~Vfi~gl~eg~~P~~~~~~~~~leEERRLfYVA~TRAk--~~L~Ls~~~~ 614 (672)
T PRK10919 553 QLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDEDNIDEERRLAYVGITRAQ--KELTFTLCKE 614 (672)
T ss_pred EEEeeecccCcCCCEEEEeCCcCCCCCCcccCCcccHHHHHHHHHHhHhhhh--hheEEeehhh
Confidence 4579999999999999875 3333332 458999999999 7999987543
No 20
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=97.40 E-value=4.1e-05 Score=67.54 Aligned_cols=46 Identities=28% Similarity=0.324 Sum_probs=33.0
Q ss_pred eeeehhhhcCCccceEEEEc-CCCcCc--------------CCCeEEEeecccCCCCcEEEec
Q 044416 164 FAMMINKSQGQSLKHVGLYL-SKQVFT--------------HGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l-~~~~~~--------------~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
--+|+|+|.|+.||.|+|.- ..+.|. ..++|||+||++ +.|+|...
T Consensus 289 ~i~TiH~sKGLEf~~V~v~~~~~~~~p~~~~~~~~~~~~Ee~rl~YVA~TRAk--~~L~l~~~ 349 (351)
T PF13361_consen 289 QIMTIHKSKGLEFDIVFVPGLNEGTFPSYRSIEDRQELEEERRLFYVAMTRAK--ERLYLSYP 349 (351)
T ss_dssp EEEECGGGTT--EEEEEEETTBTBTTTCHHHHHHHHHHHHHHHHHHHHHHTEE--EEEEEEEE
T ss_pred EEeeheeccccCCCeEEEecccCCcChHHHHHhhHhhhHHHHhHheEecchhh--ceEEEEEe
Confidence 56899999999999999862 222222 127899999999 68887764
No 21
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.31 E-value=0.00014 Score=71.71 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=36.1
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcCc--------------CCCeEEEeecccCCCCcEEEecC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVFT--------------HGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~~--------------~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
--||||+|+|++|+.|+|. +..+.|. ..++|||+||++ +.|+|....
T Consensus 550 ~lmTiH~sKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~leEERRL~YVAiTRAk--~~L~ls~~~ 611 (715)
T TIGR01075 550 QLMTLHSAKGLEFPLVFLVGMEEGMFPSQMSLDEGGRLEEERRLAYVGITRAM--QKLTITYAE 611 (715)
T ss_pred EEEEeeeccCCcCCEEEEeCCcCCCCCCccccCccccHHHHHhHHhhhhhhhh--hheEEEecc
Confidence 4479999999999999975 3222232 248999999999 799998754
No 22
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=97.27 E-value=0.00012 Score=72.30 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=36.1
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcC--------------cCCCeEEEeecccCCCCcEEEecC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVF--------------THGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~--------------~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
=-||||+|+|++|+.|+|. +..+.| +..++|||+||++ +.|+|....
T Consensus 551 ~LmTiH~sKGLEf~vVfv~gl~eg~~P~~~~~~~~~~~eEERRL~YVAiTRAk--~~L~ls~~~ 612 (726)
T TIGR01073 551 TLMTLHAAKGLEFPVVFLIGMEEGVFPHSRSLMDEKELEEERRLAYVGITRAE--EELYLTHAT 612 (726)
T ss_pred EEEeeeeccCccCCEEEEeCCcCCCCCcccccCCchhHHHHHhhHHhhhhhhh--heEEEEehh
Confidence 3489999999999999975 322222 2338999999999 789988754
No 23
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.25 E-value=0.00016 Score=71.40 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=36.5
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcCc--------------CCCeEEEeecccCCCCcEEEecC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVFT--------------HGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~~--------------~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
--||||+|+|++|+.|+|. +..+.|. ..++|||+||+| +.|+|....
T Consensus 555 ~LmTiH~AKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~leEERRL~YVAiTRAk--~~L~ls~~~ 616 (721)
T PRK11773 555 QLMTLHSAKGLEFPLVFIVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAM--QKLTLTYAE 616 (721)
T ss_pred EEEechhccCCcCCEEEEeCCccCCCCCccccccchhhHHHHhHHHhhhhhhh--heeEEEehh
Confidence 4589999999999999975 3222221 348999999999 799998754
No 24
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.86 E-value=0.00048 Score=67.26 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=36.5
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcC-------------cCCCeEEEeecccCCCCcEEEecC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVF-------------THGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~-------------~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
=-+|+|+|+|+.|+.|+|. +..+.| +.-++|||+||++ +.|+|....
T Consensus 553 ~l~TiH~sKGLEf~~Vfv~gl~eg~~P~~~~~~~~~~~EErRlfYVA~TRAk--~~L~Ls~~~ 613 (664)
T TIGR01074 553 QLMTLHASKGLEFPYVFIVGMEEGILPHQSSIEEDNVEEERRLAYVGITRAQ--KELTFTLCK 613 (664)
T ss_pred EEEeeecccCccCCeEEEeCCcCCCCCCccccccchHHHHHHHHHHhhhhhh--heeEEEehh
Confidence 4579999999999999875 333333 2238899999999 799998754
No 25
>PRK13909 putative recombination protein RecB; Provisional
Probab=96.75 E-value=0.001 Score=67.34 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=16.6
Q ss_pred eeeehhhhcCCccceEEE
Q 044416 164 FAMMINKSQGQSLKHVGL 181 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v 181 (245)
--||||||+|+.++.|++
T Consensus 609 ~imTIHkSKGLEfpvVil 626 (910)
T PRK13909 609 QIMTVHKSKGLEFEHVIV 626 (910)
T ss_pred EEEEeeccCCCCCcEEEE
Confidence 569999999999999988
No 26
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.45 E-value=0.00082 Score=65.81 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=34.4
Q ss_pred eeehhhhcCCccceEEEE-c-------CCC---------------cC----cCCCeEEEeecccCCCCcEEEec
Q 044416 165 AMMINKSQGQSLKHVGLY-L-------SKQ---------------VF----THGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 165 A~TiHKsQG~t~d~v~v~-l-------~~~---------------~~----~~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
-+|+|.|+|+++|.|+|. + |.. .| +..++|||+||++ ..|.|+..
T Consensus 591 ~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~~~~~~~~~~~eERRLlYVAlTRAr--~~l~i~~~ 662 (684)
T PRK11054 591 FMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEALLPPPEDFPDAEERRLLYVALTRAK--HRVWLLFN 662 (684)
T ss_pred EEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcccccccccccHHHHHHHHHHhhhhh--cEEEEEEc
Confidence 579999999999999984 2 110 11 2448999999999 68888774
No 27
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.00073 Score=69.80 Aligned_cols=50 Identities=32% Similarity=0.392 Sum_probs=37.5
Q ss_pred eeeeehhhhcCCccceEEEEc-CCCcCc--------------------------------------------CCCeEEEe
Q 044416 163 CFAMMINKSQGQSLKHVGLYL-SKQVFT--------------------------------------------HGQLYVAV 197 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~l-~~~~~~--------------------------------------------~g~~YvAl 197 (245)
-=-||||||+|+.++-|++.- .+..+. -.++|||+
T Consensus 744 VrImTIHkSKGLEfPiVflp~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~k~~~~~e~~~E~~RLLYVAl 823 (1139)
T COG1074 744 VRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLVYYDGLRFELFDDLKSYPTPESQANKELAEEEALAEELRLLYVAL 823 (1139)
T ss_pred EEEEEEeccCCCCCCEEEecCCCCcccccccccceeecCCCceeeEeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999864 221220 22789999
Q ss_pred ecccCCCCcEEEecCCC
Q 044416 198 SRVTTREGLTILNADQE 214 (245)
Q Consensus 198 SR~~~~~~l~i~~~~~~ 214 (245)
||++ +.|.|.+....
T Consensus 824 TRAk--~~L~l~g~~~~ 838 (1139)
T COG1074 824 TRAK--EQLILIGAPSK 838 (1139)
T ss_pred HHHH--HheEEEeeccc
Confidence 9999 79988886543
No 28
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=96.23 E-value=0.0007 Score=55.56 Aligned_cols=47 Identities=30% Similarity=0.349 Sum_probs=33.1
Q ss_pred eeeeehhhhcCCccceEEEEcCCC------cC--cCCCeEEEeecccCCCCcEEEec
Q 044416 163 CFAMMINKSQGQSLKHVGLYLSKQ------VF--THGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~l~~~------~~--~~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
-.+.|||++||++.|-|++++... .| +...+-||+||+| .+|.|++.
T Consensus 144 ~~v~Tvd~~QG~E~diVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk--~~liiig~ 198 (200)
T PF13087_consen 144 IKVSTVDSFQGQEADIVIVSLVRTNSSSNIGFLNDPNRLNVALSRAK--SGLIIIGN 198 (200)
T ss_dssp SEEEEHHHHTT--EEEEEEEE---STTS-SGGGC-HHHHHHHHTSEE--EEEEEEE-
T ss_pred EEEecHHHhccccceEEEEEeccCCccccccccCCcCeeeeeHHHHh--cCEEEEec
Confidence 467899999999999999987532 12 3336899999999 68887763
No 29
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.23 E-value=0.0021 Score=66.96 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=17.0
Q ss_pred eeeehhhhcCCccceEEEE
Q 044416 164 FAMMINKSQGQSLKHVGLY 182 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~ 182 (245)
--||||||.|+.|+.|+|.
T Consensus 784 ~IMTIHkSKGLEFPvVfl~ 802 (1232)
T TIGR02785 784 RLMTIHKSKGLEFPVVFVL 802 (1232)
T ss_pred EEEeeecccCCCCCEEEEe
Confidence 4589999999999999885
No 30
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.82 E-value=0.0053 Score=63.66 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=16.9
Q ss_pred eeeehhhhcCCccceEEEE
Q 044416 164 FAMMINKSQGQSLKHVGLY 182 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~ 182 (245)
--||||||+|++|+.|++.
T Consensus 777 ~ImTIH~SKGLEfpvV~l~ 795 (1141)
T TIGR02784 777 RVMTVHGAKGLEAPVVFLV 795 (1141)
T ss_pred EEEeccccCCCCCCEEEEe
Confidence 4589999999999999873
No 31
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.75 E-value=0.0026 Score=65.58 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=17.6
Q ss_pred eeeeehhhhcCCccceEEEE
Q 044416 163 CFAMMINKSQGQSLKHVGLY 182 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~ 182 (245)
---||||||+|++++-|++-
T Consensus 653 V~ImTIHkSKGLEfPvVflp 672 (1087)
T TIGR00609 653 VKIVTIHKSKGLEYPIVFLP 672 (1087)
T ss_pred EEEEEEEccCCCCCCEEEEe
Confidence 35689999999999999985
No 32
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=95.37 E-value=0.0042 Score=64.51 Aligned_cols=19 Identities=32% Similarity=0.224 Sum_probs=16.8
Q ss_pred eeeehhhhcCCccceEEEE
Q 044416 164 FAMMINKSQGQSLKHVGLY 182 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~ 182 (245)
--||||||+|++++-|++.
T Consensus 737 ~ImTIH~SKGLEfPvVflp 755 (1181)
T PRK10876 737 QIVTIHKSKGLEYPLVWLP 755 (1181)
T ss_pred EEEEEeccCCcCCCEEEec
Confidence 3489999999999999975
No 33
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.18 E-value=0.049 Score=57.79 Aligned_cols=108 Identities=11% Similarity=0.135 Sum_probs=65.5
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeecc-C-
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQL-P- 159 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~-P- 159 (245)
++.+.|+.|++|++++| +...||.||++++|.++....+.+.. +|.. ....+++ .+.+| +
T Consensus 574 ~e~lelA~GDrlr~t~n-d~~~~L~ngd~~tV~~i~~~~itl~~-----~G~~-~~~~l~~-----------~~~~~~~~ 635 (1623)
T PRK14712 574 PEKMPVADGERLRVTGK-IPGLRVSGGDRLQVASVSEDAMTVVV-----PGRA-EPATLPV-----------SDSPFTAL 635 (1623)
T ss_pred ccccccCCCCEEEEccC-CcccCccCCCEEEEEEecCCeEEEEE-----CCcc-eeecccc-----------cccccccc
Confidence 57999999999999999 89999999999999999876555542 2322 1111221 11222 2
Q ss_pred -cceeeeeehhhhcCCccceEEEEcCCCcCcCCCeEEEeecccCCCCcEEEec
Q 044416 160 -LAPCFAMMINKSQGQSLKHVGLYLSKQVFTHGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 160 -l~~ayA~TiHKsQG~t~d~v~v~l~~~~~~~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
|.++|+.|-+++--.+ -.|++.+++...+...++- |.+.. ..|.|+..
T Consensus 636 ~l~~~Yv~~~~~~~~~~-~~vl~~~~~~~ls~~~ln~-l~~s~--~~~~i~t~ 684 (1623)
T PRK14712 636 KLENGWVETPGHSVSDS-ATVFASVTQMAMDNATLNG-LARSG--RDVRLYSS 684 (1623)
T ss_pred ccccceecCCCCcCCCC-ceEEEEcchhhhhHHHHHH-HHhCC--ceEEEecc
Confidence 5779999887654322 2455555543333333332 33322 44555554
No 34
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.01 Score=57.91 Aligned_cols=44 Identities=32% Similarity=0.452 Sum_probs=33.2
Q ss_pred eehhhhcCCccceEEEE-cCCCcC---------------cCCCeEEEeecccCCCCcEEEec
Q 044416 166 MMINKSQGQSLKHVGLY-LSKQVF---------------THGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 166 ~TiHKsQG~t~d~v~v~-l~~~~~---------------~~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
||+|.|+|++++.|++. +..+.| +..++|||+||++ +.|++...
T Consensus 558 mT~H~aKGlEf~~Vfl~g~~eg~~P~~~~~~~~~~~~eEERRL~YVaiTRA~--~~L~~t~~ 617 (655)
T COG0210 558 MTIHAAKGLEFPYVFLVGLEEGLFPADRSLDEGDEPLEEERRLLYVAITRAK--KKLYLTYA 617 (655)
T ss_pred EechhccCCCCCeEEEecccCCCCCChhhcccCCCCccHHHHHHHHHHHHHH--HhhhhhHH
Confidence 89999999999999985 211122 2237899999998 67877764
No 35
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.84 E-value=0.09 Score=51.34 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=46.3
Q ss_pred eeeeehhhhcCCccceEEEEcC--C----CcC--cCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHhhHh
Q 044416 163 CFAMMINKSQGQSLKHVGLYLS--K----QVF--THGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQNIH 234 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~l~--~----~~~--~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~~~~ 234 (245)
-...|+|+.||...|-|++.+- . ..| +..-++||+||+| .+|.|++... ....+-+|++++.-++
T Consensus 554 i~v~TVd~fQG~E~DvIi~S~vrsn~~~~~gFl~d~rRLNVAlTRAK--~~LiIvGn~~-----~l~~~~~~~~li~~~~ 626 (637)
T TIGR00376 554 IEVSSVDGFQGREKEVIIISFVRSNRKGEVGFLKDLRRLNVALTRAR--RKLIVIGDSR-----TLSNHKFYKRLIEWCK 626 (637)
T ss_pred eEEccccccCCccccEEEEEEEecCCCCCcccccCcceeeeehhhhh--CceEEEECHH-----HhccChHHHHHHHHHH
Confidence 4567999999999999988642 1 123 3346999999999 5898888533 2345667777766654
No 36
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=77.75 E-value=0.59 Score=42.16 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=22.8
Q ss_pred CcceeeeeehhhhcCCccceEEEEcCC
Q 044416 159 PLAPCFAMMINKSQGQSLKHVGLYLSK 185 (245)
Q Consensus 159 Pl~~ayA~TiHKsQG~t~d~v~v~l~~ 185 (245)
|-.+-.+.+||.+||..+|.++|.+++
T Consensus 269 ~~~~~evgsi~t~QG~eldy~GVi~G~ 295 (352)
T PF09848_consen 269 PDSIDEVGSIYTIQGFELDYVGVIIGP 295 (352)
T ss_pred CcccccceeEEEecccccceeEEEECC
Confidence 445577899999999999999998764
No 37
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=65.44 E-value=4.2 Score=40.61 Aligned_cols=41 Identities=32% Similarity=0.414 Sum_probs=30.1
Q ss_pred eehhhhcCCccceEEEEcCCC-c------C--------------cCCCeEEEeecccCCCCcEE
Q 044416 166 MMINKSQGQSLKHVGLYLSKQ-V------F--------------THGQLYVAVSRVTTREGLTI 208 (245)
Q Consensus 166 ~TiHKsQG~t~d~v~v~l~~~-~------~--------------~~g~~YvAlSR~~~~~~l~i 208 (245)
.|+|++.|+.+|.|.+-.+.. . | ....+|||+||++. ++..
T Consensus 678 ~Tih~akglefd~v~~~n~~~~~~~s~~~~~r~~~~r~~t~~~~e~n~lyV~vtRakk--rl~~ 739 (853)
T KOG2108|consen 678 GTIHQAKGLEFDNVHLQNDFVKVFGSVSNFERLPSFRVETYNEDEWNFLYVAVTRAKK--RLIM 739 (853)
T ss_pred HHHHhccCcccceeecccCcccccccccchhhcchhhhhhhhhhhhhheeeeecchhh--hccc
Confidence 799999999999999864410 0 1 12478999999997 5443
No 38
>PF11515 Cul7: Mouse development and cellular proliferation protein Cullin-7; InterPro: IPR021097 The CPH domain is found in the Cullin-7, PARC and HERC2 proteins, which are all components of known or predicted E3-ubiquitin ligases. The CPH domain is a protein-protein interaction module that binds the teramerisation domain of the tumour suppressor protein p53 []. Structurally it forms a beta-barrel fold similar to the SH3, Tudor and KOW and domains. Unlike the SH3 and Tudor domains, which bind to small peptides, the CPH domain appears to bind to an extended surface on p53.; PDB: 2JUF_A 2JNG_A.
Probab=63.92 E-value=14 Score=25.92 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=18.7
Q ss_pred eeeeccceEeeeccCCCCCeeecceEEEEecCCc
Q 044416 86 RLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKW 119 (245)
Q Consensus 86 ~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~ 119 (245)
.|++||.|.++++- ..+.-|+.|.|...+.+
T Consensus 17 ~i~~GM~VRc~~~y---eeV~~GD~G~V~k~~~d 47 (78)
T PF11515_consen 17 NIQPGMRVRCCRDY---EEVRAGDEGEVFKQDRD 47 (78)
T ss_dssp H--TT-EEEESS-B---TTB-TT-EEE-EEEE-T
T ss_pred hCCCCcEEEEeccc---ccccccccceeEeeccC
Confidence 57899999999983 25889999998888654
No 39
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=58.94 E-value=21 Score=25.29 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=23.2
Q ss_pred eeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE
Q 044416 85 IRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 85 l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~ 125 (245)
-.|++|++||.+ .|-.|+|.+++++.+..++
T Consensus 36 ~~L~~Gd~VvT~----------gGi~G~V~~i~d~~v~vei 66 (84)
T TIGR00739 36 ESLKKGDKVLTI----------GGIIGTVTKIAENTIVIEL 66 (84)
T ss_pred HhCCCCCEEEEC----------CCeEEEEEEEeCCEEEEEE
Confidence 357899999863 4778999999877555544
No 40
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=58.35 E-value=5.9 Score=28.25 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=12.0
Q ss_pred ceeeeeccceEeeeccCCC
Q 044416 84 DIRLKEGAPVMLLRNLNQI 102 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~ 102 (245)
--.|++|+.||+..|++.+
T Consensus 63 w~~L~VG~~VMvNYN~d~P 81 (85)
T PF12148_consen 63 WDELKVGQVVMVNYNVDEP 81 (85)
T ss_dssp GGG--TT-EEEEEE-TTST
T ss_pred HHhCCcccEEEEecCCCCc
Confidence 3468999999999998755
No 41
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=58.10 E-value=2.4 Score=41.03 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=27.1
Q ss_pred eehhhhcCCccceEEEEcCC----CcCcCCCeEEEeecccC
Q 044416 166 MMINKSQGQSLKHVGLYLSK----QVFTHGQLYVAVSRVTT 202 (245)
Q Consensus 166 ~TiHKsQG~t~d~v~v~l~~----~~~~~g~~YvAlSR~~~ 202 (245)
+-+.-+.|+.||+|+|.-++ .......+|||+||+-.
T Consensus 698 ipvy~aKGlEFD~viv~d~s~~e~te~~~r~LYva~TRAlh 738 (747)
T COG3973 698 IPVYDAKGLEFDHVIVVDPSIVEETEQDLRDLYVAVTRALH 738 (747)
T ss_pred EEeeecccceeeeEEEecchhhcccccchhhHHHHHHHHHH
Confidence 34556899999999987553 12234489999999974
No 42
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=56.00 E-value=11 Score=37.75 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=47.1
Q ss_pred eehhhhcCCccceEEEEcCCC------cC--cCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHhhHhhh
Q 044416 166 MMINKSQGQSLKHVGLYLSKQ------VF--THGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQNIHTS 236 (245)
Q Consensus 166 ~TiHKsQG~t~d~v~v~l~~~------~~--~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 236 (245)
-|+-+-||.+-|-|++.|=+. .| .++-+-||||||| -||+|++...- -+..+.....+..+||.+
T Consensus 902 atVDsfQGeEndIVLlSLVRsn~~griGFL~~anRvCVALSRAr--~glyiiGN~q~----la~~~pLWnkivntLren 974 (1025)
T KOG1807|consen 902 ATVDSFQGEENDIVLLSLVRSNISGRIGFLRQANRVCVALSRAR--WGLYIIGNVQI----LADTPPLWNKIVNTLREN 974 (1025)
T ss_pred EEeccccCccccEEEEEEEeccCCceeeeeeccchhhhhhhhhh--cceEEecceee----cccCchhHHHHHHHHHhc
Confidence 478899999999999876421 12 3445789999999 69999997542 233367778888888643
No 43
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=51.82 E-value=31 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=23.8
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~ 125 (245)
.-.|++|++||.+ .|-.|+|+++.++.+..++
T Consensus 50 ~~~Lk~Gd~VvT~----------gGi~G~Vv~i~~~~v~lei 81 (106)
T PRK05585 50 LSSLAKGDEVVTN----------GGIIGKVTKVSEDFVIIEL 81 (106)
T ss_pred HHhcCCCCEEEEC----------CCeEEEEEEEeCCEEEEEE
Confidence 3467899999863 3778999999876555555
No 44
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=51.38 E-value=31 Score=25.17 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=35.6
Q ss_pred ceeeeeccceEeeeccCCCCC----eeecceEEEEecCCcceEEEEEee
Q 044416 84 DIRLKEGAPVMLLRNLNQIEG----LCNGTRLIVTRLGKWSIRGDIISG 128 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~g----l~NG~~g~V~~i~~~~~~~~~~~~ 128 (245)
--++++|+.|-+..|-....| -+-|-+|+|++...+...+.+..|
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G 78 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDG 78 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecC
Confidence 457889999999988554444 677999999999988887777644
No 45
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=43.24 E-value=54 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=22.9
Q ss_pred eeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE
Q 044416 85 IRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 85 l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~ 125 (245)
-.|++|++||.+ -|-.|+|.++..+.+..++
T Consensus 37 ~~Lk~GD~VvT~----------gGi~G~V~~I~d~~v~lei 67 (109)
T PRK05886 37 ESLQPGDRVHTT----------SGLQATIVGITDDTVDLEI 67 (109)
T ss_pred HhcCCCCEEEEC----------CCeEEEEEEEeCCEEEEEE
Confidence 367899999863 3667899999876555554
No 46
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=39.33 E-value=25 Score=34.75 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=34.3
Q ss_pred eeeeehhhhcCCccceEEEEcCCCc-------C--cCCCeEEEeecccCCCCcEEEe
Q 044416 163 CFAMMINKSQGQSLKHVGLYLSKQV-------F--THGQLYVAVSRVTTREGLTILN 210 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~l~~~~-------~--~~g~~YvAlSR~~~~~~l~i~~ 210 (245)
...-|++.-||..-|-+++.+-... | +..-+=||+||+| .+|.+++
T Consensus 672 v~v~tvd~fQG~EkdvIi~S~v~s~~~~~~i~~l~d~rRLNVAlTRAk--~~livvg 726 (767)
T COG1112 672 VEVGTVDGFQGREKDVIILSLVRSNDDKGEIGFLGDPRRLNVALTRAK--RKLIVVG 726 (767)
T ss_pred eEEeeccccCCccCcEEEEEEEeecCCCccccccCchhhhhhhhhccc--ceEEEEc
Confidence 4667999999999888887754311 1 1224459999999 6999999
No 47
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=37.87 E-value=19 Score=15.84 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=8.2
Q ss_pred ceeeeeehhhh
Q 044416 161 APCFAMMINKS 171 (245)
Q Consensus 161 ~~ayA~TiHKs 171 (245)
.++|-.+||-|
T Consensus 2 ~l~wqksihgs 12 (12)
T PF08247_consen 2 ELCWQKSIHGS 12 (12)
T ss_pred ceeEeeeecCC
Confidence 46888888864
No 48
>PF14001 YdfZ: YdfZ protein
Probab=37.33 E-value=25 Score=23.59 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=19.3
Q ss_pred eeeeccceEeeeccCCCCCeeecceEEEEecCCc
Q 044416 86 RLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKW 119 (245)
Q Consensus 86 ~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~ 119 (245)
.|..|++||+-.+ |.+|+|..|-.+
T Consensus 9 ~i~~G~rVMiagt---------G~~gvikAih~~ 33 (64)
T PF14001_consen 9 AITTGSRVMIAGT---------GATGVIKAIHAD 33 (64)
T ss_pred cCCCCCEEEEcCC---------CcccEEeeeecC
Confidence 3678999998544 889999988543
No 49
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=36.48 E-value=42 Score=17.62 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=17.9
Q ss_pred eeeccceEeeeccCCCCCeeecceEEEEecC
Q 044416 87 LKEGAPVMLLRNLNQIEGLCNGTRLIVTRLG 117 (245)
Q Consensus 87 l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~ 117 (245)
+++|+.|+++.- -.-|..|+|.++.
T Consensus 2 ~~~G~~V~I~~G------~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAG------PFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeEC------CCCCcEEEEEEEc
Confidence 467899988754 3557788887764
No 50
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=33.42 E-value=39 Score=25.72 Aligned_cols=39 Identities=21% Similarity=0.466 Sum_probs=26.7
Q ss_pred hhhhhhccccCC----CCCcceeeeeccceEeeeccCCCCCeee
Q 044416 68 PTEFLNSLKFNG----IPNHDIRLKEGAPVMLLRNLNQIEGLCN 107 (245)
Q Consensus 68 ~~~~~~~~~~~g----l~~~~l~l~~G~~Vml~~Nl~~~~gl~N 107 (245)
+.+|++++-..| .-|.++.+.+||+|+|... ..+.|.+-
T Consensus 12 p~efldrifkegk~vfvkpatl~vepgMKviFYaS-redqGf~G 54 (145)
T COG2028 12 PKEFLDRIFKEGKDVFVKPATLWVEPGMKVIFYAS-REDQGFYG 54 (145)
T ss_pred cHHHHHHHHhcCCceEeecceEEecCCcEEEEEEe-cccCcccc
Confidence 445555543333 2268999999999999988 66667663
No 51
>TIGR03318 YdfZ_fam putative selenium-binding protein YdfZ. This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none.
Probab=33.23 E-value=28 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=19.4
Q ss_pred eeeeccceEeeeccCCCCCeeecceEEEEecCCc
Q 044416 86 RLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKW 119 (245)
Q Consensus 86 ~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~ 119 (245)
.+..|++||+-.+ |.+|++..|-.+
T Consensus 10 ait~G~rVMia~t---------G~tgvikaIh~d 34 (65)
T TIGR03318 10 AITTGSRVMIAGT---------GHTGVIKAIHTE 34 (65)
T ss_pred ccCCCcEEEEecC---------CccceeehhhhC
Confidence 3567999999654 899999988543
No 52
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=31.12 E-value=32 Score=20.81 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=15.0
Q ss_pred ehHHHHhhHhhhhhhhhc
Q 044416 225 VYKEVFQNIHTSAHKIKV 242 (245)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~ 242 (245)
+.+|++..+|.+.+|+|.
T Consensus 8 ~KqEIL~EvrkEl~K~K~ 25 (40)
T PF08776_consen 8 LKQEILEEVRKELQKVKE 25 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467999999999999873
No 53
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=30.64 E-value=58 Score=31.72 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=35.2
Q ss_pred eeeehhhhcCCccceEEEEcCC--Cc----C--cCCCeEEEeecccCCCCcEEEecC
Q 044416 164 FAMMINKSQGQSLKHVGLYLSK--QV----F--THGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~--~~----~--~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
--.|+-+-||.+.|-||+.+=+ .. | +..=+=||+||+| .++.+++..
T Consensus 552 eV~TVD~fQGrEkdvVIfsmVRSN~k~evGFL~e~RRLNVAiTRaR--Rh~~vIgds 606 (649)
T KOG1803|consen 552 EVGTVDGFQGREKDVVIFSLVRSNDKGEVGFLGETRRLNVAITRAR--RHFVVIGDS 606 (649)
T ss_pred eeecccccccceeeEEEEEEEeecCcccccccCCcceeeEEEEecc--ceEEEEcCc
Confidence 4568999999999999987521 11 2 3335799999999 689888853
No 54
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=29.21 E-value=1.4e+02 Score=22.66 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=26.2
Q ss_pred cceeeeeccceEeeeccCCCCCeeecceEEEEecCC
Q 044416 83 HDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGK 118 (245)
Q Consensus 83 ~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~ 118 (245)
....+.+|+.|-+|.- ....+..|+.|+|..+..
T Consensus 35 ~~~~~~~Gd~VFlT~~--~~~Dl~~Gt~GiIa~V~~ 68 (119)
T PF04322_consen 35 ALESLDPGDRVFLTSV--SLEDLTPGTEGIIAEVKK 68 (119)
T ss_pred eeecCCCCCEEEEecC--CHHHCCCCCCeEEEEEEE
Confidence 3556789999988864 344699999999988754
No 55
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=29.13 E-value=89 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.4
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCC
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGK 118 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~ 118 (245)
.+.++.||+|++++-- .-|.+|+|..+..
T Consensus 6 ~~~I~~GD~V~Vi~G~------dKGK~G~V~~V~~ 34 (83)
T CHL00141 6 KMHVKIGDTVKIISGS------DKGKIGEVLKIIK 34 (83)
T ss_pred eCcccCCCEEEEeEcC------CCCcEEEEEEEEc
Confidence 5688999999998863 2389999998854
No 56
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=27.87 E-value=20 Score=25.25 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=0.9
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~ 125 (245)
.-.|++|++|+.. .|-.|+|++++++.+..++
T Consensus 34 ~~~Lk~Gd~VvT~----------gGi~G~V~~i~~~~v~lei 65 (82)
T PF02699_consen 34 LASLKPGDEVVTI----------GGIYGTVVEIDDDTVVLEI 65 (82)
T ss_dssp GG----------------------------------------
T ss_pred HHcCCCCCEEEEC----------CcEEEEEEEEeCCEEEEEE
Confidence 4468899999863 4778999999777666555
No 57
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=27.55 E-value=69 Score=19.85 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=17.1
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecc
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGT 109 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~ 109 (245)
+..|.|+.|+.|.++.. .+.|+.-|.
T Consensus 10 ~dELs~~~Gd~i~v~~~--~~~~W~~g~ 35 (49)
T PF14604_consen 10 PDELSFKKGDVITVLEK--SDDGWWYGR 35 (49)
T ss_dssp TTB-EB-TTEEEEEEEE--SSTSEEEEE
T ss_pred cCEeeEcCCCEEEEEEe--CCCCEEEEE
Confidence 36899999999999966 345555443
No 58
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=25.56 E-value=17 Score=34.59 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=30.8
Q ss_pred eeeehhhhcCCccceEEEEcCCCcC------cCCCeEEEeecccCCCCcEE
Q 044416 164 FAMMINKSQGQSLKHVGLYLSKQVF------THGQLYVAVSRVTTREGLTI 208 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~~~~------~~g~~YvAlSR~~~~~~l~i 208 (245)
.-.+|..+.|....-|++.-.. .. -++.+|||+||.+..-.+..
T Consensus 525 tis~IyrAKGnEapfV~aL~a~-~ls~~la~~RN~LfTamTRSkawvrv~g 574 (660)
T COG3972 525 TISRIYRAKGNEAPFVYALGAA-YLSTGLADWRNILFTAMTRSKAWVRVVG 574 (660)
T ss_pred EeeeehhccCCCCcEEEEehhh-hhCccchhHHhHHHHHHhhhhhhhhhhc
Confidence 4458999999999988875221 22 34478999999996544433
No 59
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=25.37 E-value=69 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=23.3
Q ss_pred cceeeeeccceEeeeccCCCCCeeecceEEEEecCC
Q 044416 83 HDIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGK 118 (245)
Q Consensus 83 ~~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~ 118 (245)
-+++||+|.++++.-- -+.||++-....+..
T Consensus 3 Lkl~LKP~ERi~INGa-----Vi~Ngdrr~~l~i~n 33 (131)
T PRK12791 3 LRVELKPFERIVIGQS-----VITNSDTRARFLIDG 33 (131)
T ss_pred eeEEeCCCCEEEEcCE-----EEEeCCcceEEEEeC
Confidence 3789999999987433 388899877777754
No 60
>KOG3310 consensus Riboflavin synthase alpha chain [Coenzyme transport and metabolism]
Probab=24.02 E-value=1.5e+02 Score=23.97 Aligned_cols=41 Identities=32% Similarity=0.289 Sum_probs=29.5
Q ss_pred ceeeeeccceEeeeccCCCCC-eeecceEEEEecCCcceEEEE
Q 044416 84 DIRLKEGAPVMLLRNLNQIEG-LCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~g-l~NG~~g~V~~i~~~~~~~~~ 125 (245)
-+.+++|++++|.-= +.... -+||+-.+|+++..+...+.+
T Consensus 22 Gf~~kI~A~~iL~Dc-h~GDSIAVNGtCLTVTeFn~~~FtVGi 63 (210)
T KOG3310|consen 22 GFDLKIGARVILEDC-HLGDSIAVNGTCLTVTEFNAEEFTVGI 63 (210)
T ss_pred CEEEEecCCeeeeec-ccCCeEEEccEEEEEEeecccceEEec
Confidence 467889999998743 32222 689999999999876555443
No 61
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=23.19 E-value=1.4e+02 Score=20.71 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=22.8
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCC
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGK 118 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~ 118 (245)
.+.++.||+|.+++-- .-|.+|+|..+..
T Consensus 4 ~~~I~kGD~V~Vi~G~------dKGK~G~V~~V~~ 32 (76)
T PRK12281 4 KLKVKKGDMVKVIAGD------DKGKTGKVLAVLP 32 (76)
T ss_pred cccccCCCEEEEeEcC------CCCcEEEEEEEEc
Confidence 4578999999998863 2388999998854
No 62
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=20.87 E-value=3.2e+02 Score=19.51 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=28.8
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE--EeeccCCeeEEEEE
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI--ISGTNIGQNVTIQR 139 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~--~~~~~~g~~v~i~~ 139 (245)
.-.|+.|+.+|++-. ..-+.|+|.++..+.+.+.. ......|..+.+.|
T Consensus 24 v~~i~~~E~LmlnIG-------satt~G~V~~~k~d~~~v~L~~Pvc~~~g~rvaiSR 74 (88)
T PF09173_consen 24 VEPIKKGEVLMLNIG-------SATTGGVVTSVKKDMAEVELKKPVCAEKGERVAISR 74 (88)
T ss_dssp -----TTEEEEEEET-------TEEEEEEEEEEETTEEEEEEEEEEE-STTSEEEEEE
T ss_pred cccCCCCCEEEEEEc-------cccccEEEEEEECCEEEEEecCCeEcCcCCeeeeeh
Confidence 456889999998765 22367888888877665544 22334666776655
No 63
>PF07057 TraI: DNA helicase TraI; InterPro: IPR009767 This entry represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI. TraI is a bifunctional protein that catalyses the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer [].; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0000746 conjugation; PDB: 3FLD_B.
Probab=20.56 E-value=33 Score=26.27 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEeecccCCCCcEEEecCCCCc
Q 044416 195 VAVSRVTTREGLTILNADQEVE 216 (245)
Q Consensus 195 vAlSR~~~~~~l~i~~~~~~~~ 216 (245)
|+|||+| +++.|+..+.++-
T Consensus 1 V~lSRaK--eHVQvYTDn~~~W 20 (126)
T PF07057_consen 1 VSLSRAK--EHVQVYTDNLEKW 20 (126)
T ss_dssp ----------------------
T ss_pred Ccchhhh--heeeeEeCCHHHH
Confidence 6899999 7888888766543
No 64
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=20.10 E-value=1.4e+02 Score=19.22 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=21.9
Q ss_pred eeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE
Q 044416 88 KEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 88 ~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~ 125 (245)
-+|+.|.+. | ....+||-.|.|..+......+.|
T Consensus 3 lPG~~V~V~-n---~~~~Y~~y~G~VQRvsdgkaaVLF 36 (53)
T PF11623_consen 3 LPGSTVRVK-N---PNDIYYGYEGFVQRVSDGKAAVLF 36 (53)
T ss_dssp -TT-EEEE------TTSTTTT-EEEEEEEETTEEEEEE
T ss_pred cCCCEEEEe-C---CCCccchheEEEEEeeCCeEEEEe
Confidence 468888763 3 345899999999999876655555
Done!