Query 044416
Match_columns 245
No_of_seqs 171 out of 1630
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w36_D RECD, exodeoxyribonucle 99.8 6.3E-21 2.1E-25 181.6 2.8 142 16-212 435-583 (608)
2 3e1s_A Exodeoxyribonuclease V, 99.8 2.2E-20 7.4E-25 176.7 5.5 139 17-211 396-540 (574)
3 3upu_A ATP-dependent DNA helic 99.1 2.7E-11 9.3E-16 111.4 4.3 50 157-208 404-458 (459)
4 3dmn_A Putative DNA helicase; 97.7 3.8E-06 1.3E-10 67.1 -0.0 48 163-212 102-154 (174)
5 3vkw_A Replicase large subunit 97.2 7.2E-05 2.5E-09 68.2 0.7 46 165-212 371-422 (446)
6 1uaa_A REP helicase, protein ( 96.5 0.00038 1.3E-08 66.5 -0.5 49 164-214 553-615 (673)
7 1pjr_A PCRA; DNA repair, DNA r 96.3 0.00059 2E-08 65.9 -0.2 46 164-211 560-620 (724)
8 2gk6_A Regulator of nonsense t 96.3 0.00043 1.5E-08 65.7 -1.4 64 164-234 532-603 (624)
9 3lfu_A DNA helicase II; SF1 he 96.2 0.00059 2E-08 64.5 -0.7 47 164-212 555-616 (647)
10 2wjy_A Regulator of nonsense t 95.9 0.0015 5.1E-08 63.8 0.5 64 164-234 708-779 (800)
11 3u4q_A ATP-dependent helicase/ 95.4 0.0035 1.2E-07 64.0 0.7 19 164-182 789-807 (1232)
12 1w36_B RECB, exodeoxyribonucle 95.4 0.0014 4.9E-08 66.6 -2.1 46 164-211 737-818 (1180)
13 2xzl_A ATP-dependent helicase 94.7 0.0062 2.1E-07 59.5 0.3 64 164-234 710-781 (802)
14 4b3f_X DNA-binding protein smu 94.3 0.012 4E-07 56.0 1.4 63 164-233 558-628 (646)
15 1w36_C RECC, exodeoxyribonucle 80.7 0.62 2.1E-05 47.1 2.0 74 158-233 654-755 (1122)
16 3u4q_B ATP-dependent helicase/ 67.9 2.6 8.8E-05 42.7 2.7 49 163-213 588-672 (1166)
17 4hci_A Cupredoxin 1; structura 60.2 19 0.00064 24.7 5.5 18 82-99 27-45 (100)
18 3db3_A E3 ubiquitin-protein li 34.6 15 0.00052 28.2 1.5 30 84-113 90-122 (161)
19 2jng_A Cullin-7, CUL-7; P53 bi 33.4 63 0.0022 22.9 4.4 50 86-139 21-70 (105)
20 1k4u_S Phagocyte NADPH oxidase 30.0 43 0.0015 20.5 2.9 17 82-98 19-35 (62)
21 2nwm_A Vinexin; cell adhesion; 29.5 43 0.0015 21.0 2.9 17 82-98 15-31 (65)
22 2eyx_A V-CRK sarcoma virus CT1 28.5 37 0.0013 21.3 2.4 17 82-98 22-38 (67)
23 2ebp_A SAM and SH3 domain-cont 27.6 42 0.0014 21.6 2.6 17 82-98 25-41 (73)
24 1uti_A GRB2-related adaptor pr 27.6 43 0.0015 20.1 2.6 17 82-98 15-31 (58)
25 2i0n_A Class VII unconventiona 27.3 39 0.0013 22.1 2.4 26 82-108 24-49 (80)
26 2ew3_A SH3-containing GRB2-lik 26.3 44 0.0015 21.2 2.5 17 82-98 17-33 (68)
27 3qyh_B CO-type nitrIle hydrata 26.1 32 0.0011 27.9 2.1 33 83-116 127-164 (219)
28 1tuc_A Alpha-spectrin; capping 26.0 46 0.0016 20.6 2.5 24 83-108 4-27 (63)
29 2lj0_A Sorbin and SH3 domain-c 25.7 54 0.0018 20.8 2.8 23 82-106 20-42 (65)
30 2zzd_A Thiocyanate hydrolase s 25.6 33 0.0011 25.3 1.9 32 84-116 34-70 (126)
31 1zx6_A YPR154WP; SH3 domain, p 25.5 48 0.0016 20.0 2.5 17 82-98 16-32 (58)
32 2dpr_A CON-T(K7GLA); conantoxi 24.5 36 0.0012 17.2 1.3 12 225-236 4-15 (26)
33 2bzy_A CRK-like protein, CRKL 24.5 50 0.0017 20.6 2.5 24 83-108 18-41 (67)
34 1k1z_A VAV; SH3, proto-oncogen 24.4 46 0.0016 21.5 2.4 25 83-108 33-57 (78)
35 3hht_B NitrIle hydratase beta 24.4 35 0.0012 27.9 2.0 32 84-116 139-175 (229)
36 2bz8_A SH3-domain kinase bindi 23.9 53 0.0018 19.7 2.5 25 82-108 15-39 (58)
37 2a28_A BZZ1 protein; SH3 domai 23.8 56 0.0019 19.3 2.6 17 82-98 14-30 (54)
38 1zlm_A Osteoclast stimulating 23.7 57 0.0019 19.6 2.6 17 82-98 17-33 (58)
39 2jz2_A SSL0352 protein; SH3-li 23.5 80 0.0027 20.2 3.2 34 88-125 3-36 (66)
40 1zuu_A BZZ1 protein; SH3 domai 23.4 78 0.0027 18.8 3.2 17 82-98 15-31 (58)
41 1sem_A SEM-5; SRC-homology 3 ( 22.9 60 0.0021 19.4 2.6 17 82-98 16-32 (58)
42 2csi_A RIM-BP2, RIM binding pr 22.9 48 0.0017 21.4 2.2 26 82-108 28-53 (76)
43 2e6z_A Transcription elongatio 22.7 50 0.0017 20.6 2.2 30 84-119 5-34 (59)
44 2jt4_A Cytoskeleton assembly c 22.6 81 0.0028 19.7 3.3 24 82-106 20-43 (71)
45 2ed0_A ABL interactor 2; coile 22.1 60 0.002 21.0 2.6 17 82-98 31-47 (78)
46 1w70_A Neutrophil cytosol fact 22.0 61 0.0021 19.6 2.5 25 82-108 18-42 (60)
47 3udc_A Small-conductance mecha 22.0 82 0.0028 26.1 4.0 43 84-141 126-168 (285)
48 2g6f_X RHO guanine nucleotide 21.9 60 0.002 19.6 2.4 17 82-98 18-34 (59)
49 4e6r_A Cytoplasmic protein NCK 21.9 60 0.0021 19.3 2.4 25 82-108 15-39 (58)
50 2v1q_A SLA1, cytoskeleton asse 21.6 91 0.0031 18.6 3.3 24 82-106 16-39 (60)
51 2gnc_A SLIT-ROBO RHO GTPase-ac 21.5 49 0.0017 20.1 1.9 17 82-98 20-36 (60)
52 2dbk_A CRK-like protein; struc 21.2 67 0.0023 21.3 2.8 17 82-98 32-48 (88)
53 1use_A VAsp, vasodilator-stimu 21.2 43 0.0015 20.0 1.4 17 225-241 12-28 (45)
54 2enm_A Sorting nexin-9; SH3-li 21.0 67 0.0023 20.6 2.6 26 82-108 24-49 (77)
55 2djq_A SH3 domain containing r 20.9 61 0.0021 20.2 2.4 17 82-98 21-37 (68)
56 3c0c_A Endophilin-A2; endocyto 20.9 64 0.0022 20.5 2.5 17 82-98 27-43 (73)
57 2j6f_A CD2-associated protein; 20.3 67 0.0023 19.6 2.4 27 82-109 15-41 (62)
58 2dmo_A Neutrophil cytosol fact 20.1 70 0.0024 20.0 2.5 17 82-98 21-37 (68)
59 2do3_A Transcription elongatio 20.1 1.1E+02 0.0037 20.0 3.4 30 85-120 16-45 (69)
No 1
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.80 E-value=6.3e-21 Score=181.62 Aligned_cols=142 Identities=30% Similarity=0.404 Sum_probs=70.2
Q ss_pred cCcceEEccchH---HHHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccc
Q 044416 16 LKERAILTPKNE---MVHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAP 92 (245)
Q Consensus 16 ~~~~~iL~~tn~---~v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~ 92 (245)
+++..+|||.++ .|+.+|..+.+.+...... . +.....+++|+|
T Consensus 435 ~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~-~--------------------------------~~~~~~~~~Gd~ 481 (608)
T 1w36_D 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI-H--------------------------------RHPHSRWYEGRP 481 (608)
T ss_dssp HTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC------------------------------------------------
T ss_pred HhhhhhhCCccCCchhHHHHHHHHHHHhCccCcc-c--------------------------------ccccccccCCCe
Confidence 357789999998 7999999988877543211 0 013557899999
Q ss_pred eEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccC-cceeeeeehhhh
Q 044416 93 VMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLP-LAPCFAMMINKS 171 (245)
Q Consensus 93 Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~P-l~~ayA~TiHKs 171 (245)
||+++| +.+.|++||++|+|+.++. .+.+.+.. .+|..+. +...++| +.+|||+|||||
T Consensus 482 Vm~~~N-d~~~gl~NGdiG~V~~~~~-~l~v~f~~--~dg~~~~----------------~~~~~l~~l~~~~a~Tihks 541 (608)
T 1w36_D 482 VMIARN-DSALGLFNGDIGIALDRGQ-GTRVWFAM--PDGNIKS----------------VQPSRLPEHETTWAMTVHKS 541 (608)
T ss_dssp -------------------------------------------------------------CCSCCCSCSSCSEEETTTT
T ss_pred eeEeee-chhhcccCCCeEEEEEcCC-eEEEEEEC--CCCcEEE----------------echHHCCccceEEEEEEEec
Confidence 999999 8999999999999998742 22222221 1222211 1223444 999999999999
Q ss_pred cCCccceEEEEcCC---CcCcCCCeEEEeecccCCCCcEEEecC
Q 044416 172 QGQSLKHVGLYLSK---QVFTHGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 172 QG~t~d~v~v~l~~---~~~~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
||+|+|.|++.++. ..++++++|||+||+| +.|.|+..+
T Consensus 542 qG~e~~~v~~~~~~~~~~~~~~~~~Yva~tRa~--~~l~l~~~~ 583 (608)
T 1w36_D 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRAR--RRLSLYADE 583 (608)
T ss_dssp TTCCBSEEEEECCSSCCSSSCHHHHHHHHTTBS--SCEEEECCT
T ss_pred ccccCCeEEEEeCCCccchhhhhhHHhhhhhhh--ceEEEEECH
Confidence 99999999999874 3578889999999999 588888743
No 2
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.80 E-value=2.2e-20 Score=176.70 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=106.5
Q ss_pred CcceEEccchHH---HHHHHHHHHhhcCCCccEEEEecccccccCCCCCCcccchhhhhhccccCCCCCcceeeeeccce
Q 044416 17 KERAILTPKNEM---VHELNEMIMNIIPGQGRTYFSSDSICKASANTNDEDVLYPTEFLNSLKFNGIPNHDIRLKEGAPV 93 (245)
Q Consensus 17 ~~~~iL~~tn~~---v~~iN~~~l~~l~g~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~l~l~~G~~V 93 (245)
.+..+|||++.. ++.+|....+.+......+. .....+++|++|
T Consensus 396 ~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~---------------------------------~~~~~~~~Gd~V 442 (574)
T 3e1s_A 396 GAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVR---------------------------------IAEGEARPGDTV 442 (574)
T ss_dssp GGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEE---------------------------------CSSSEECTTCEE
T ss_pred cCeEEEEeecCCchhHHHHHHHHHHHhCCCCCcee---------------------------------eCCeEEecCCEE
Confidence 578899999986 89999998887754321110 124567899999
Q ss_pred EeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEeeCCCCCCcCcceeeeccCcceeeeeehhhhcC
Q 044416 94 MLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRIIMSPNESRWPFKLNRRQLPLAPCFAMMINKSQG 173 (245)
Q Consensus 94 ml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~r~q~Pl~~ayA~TiHKsQG 173 (245)
|+++| +.+.|++||++|+|.+++...+.+.+ +|..+.++.. ...++.+|||+|||||||
T Consensus 443 ~~~~N-~~~~~v~NGdiG~i~~~~~~~l~v~f-----dg~~v~~~~~---------------~l~~~~~ayA~TIHksQG 501 (574)
T 3e1s_A 443 VQTKN-DYNNEIFNGTLGMVLKAEGARLTVDF-----DGNVVELTGA---------------ELFNLQLGYALTVHRAQG 501 (574)
T ss_dssp EECSC-BTTTTBCTTCEEEEEEECSSCEEEEE-----TTEEEEECGG---------------GGTTEEECSEEEHHHHTT
T ss_pred EEeec-CcccceecCceeEEEcCCCCEEEEEE-----CCeEEEEchH---------------HhhhhhheeeeeHHHhCC
Confidence 99999 88999999999999988766665555 2433322211 124689999999999999
Q ss_pred CccceEEEEcCC---CcCcCCCeEEEeecccCCCCcEEEec
Q 044416 174 QSLKHVGLYLSK---QVFTHGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 174 ~t~d~v~v~l~~---~~~~~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
+++|.|++.++. ..++++++|||+||+|+ .|.|++.
T Consensus 502 sEfd~Vil~l~~~~~~~l~r~LlYvAiTRAk~--~l~lvg~ 540 (574)
T 3e1s_A 502 SEWGTVLGVLHEAHMPMLSRNLVYTALTRARD--RFFSAGS 540 (574)
T ss_dssp CCEEEEEEEECGGGGGGCCHHHHHHHHHTEEE--EEEEEEC
T ss_pred ccCCeEEEEcCCccccccccceEEEEeeeeee--EEEEEEC
Confidence 999999998764 35688899999999994 7888764
No 3
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.12 E-value=2.7e-11 Score=111.37 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=39.3
Q ss_pred ccCcceeeeeehhhhcCCccceEEEEcCCCcC-----cCCCeEEEeecccCCCCcEE
Q 044416 157 QLPLAPCFAMMINKSQGQSLKHVGLYLSKQVF-----THGQLYVAVSRVTTREGLTI 208 (245)
Q Consensus 157 q~Pl~~ayA~TiHKsQG~t~d~v~v~l~~~~~-----~~g~~YvAlSR~~~~~~l~i 208 (245)
..++..+||+|+|||||++||.|++..+.... ...++|||+||++ ..|++
T Consensus 404 ~~~~~~~~~~t~h~~kG~e~~~v~~~~~~~~~~~~~~~~~~~yva~tRa~--~~l~~ 458 (459)
T 3upu_A 404 FSKVKALPASTFHKAQGMSVDRAFIYTPCIHYADVELAQQLLYVGVTRGR--YDVFY 458 (459)
T ss_dssp BCCEEESSEEETGGGTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHHEE--EEEEE
T ss_pred HhhcCcEEEEEEEeccCCCCCEEEEecCCCCCcChHHHhheeeeeeccee--eEEEe
Confidence 45788899999999999999999998653111 2457999999999 45554
No 4
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=97.75 E-value=3.8e-06 Score=67.06 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=37.8
Q ss_pred eeeeehhhhcCCccceEEEEcCCC-----cCcCCCeEEEeecccCCCCcEEEecC
Q 044416 163 CFAMMINKSQGQSLKHVGLYLSKQ-----VFTHGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~l~~~-----~~~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
...+|+|+|||++||.|++.-... .....++|||+||++ ..|.|+...
T Consensus 102 v~v~t~~~~KGlEf~~V~~~~~~~~~~~~~~~~~llYva~TRA~--~~l~~~~~~ 154 (174)
T 3dmn_A 102 VIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAM--HELTLVAVG 154 (174)
T ss_dssp EEEEEGGGCTTCCEEEEEEETCBTTTSCSGGGHHHHHHHHTTEE--EEEEEEEES
T ss_pred eEEEEccccCCcCCCEEEEecCCcccCCChhhhceeEEEecCcc--cEEEEEeCC
Confidence 467899999999999999874422 224558999999999 678888753
No 5
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.18 E-value=7.2e-05 Score=68.18 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=36.7
Q ss_pred eeehhhhcCCccceEEEEcC-C---CcC--cCCCeEEEeecccCCCCcEEEecC
Q 044416 165 AMMINKSQGQSLKHVGLYLS-K---QVF--THGQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 165 A~TiHKsQG~t~d~v~v~l~-~---~~~--~~g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
+.|+|.+||+|++.|.+... . ..+ +...+||||||+| .+|+++...
T Consensus 371 ~~Tv~e~QG~tf~~Vtlvr~~~~~~~l~~~~~~~~~VALTRh~--~~L~~~tv~ 422 (446)
T 3vkw_A 371 VHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHT--KSLKYYTVV 422 (446)
T ss_dssp CEETGGGTTCCEEEEEEEECCCSCCTTCSTTCHHHHHHHSSEE--EEEEEEESS
T ss_pred ccCHHHcCCcccCeEEEEECCCCCcccccCCccceEEEeecCC--CEEEEEEec
Confidence 69999999999999988633 2 123 3558999999999 689998864
No 6
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.46 E-value=0.00038 Score=66.49 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=37.1
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcCc-------------CCCeEEEeecccCCCCcEEEecCCC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVFT-------------HGQLYVAVSRVTTREGLTILNADQE 214 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~~-------------~g~~YvAlSR~~~~~~l~i~~~~~~ 214 (245)
--||+|+|+|+.||.|+|. +..+.|. ..++|||+||++ +.|+|......
T Consensus 553 ~l~TiH~sKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~EErRL~YVA~TRAk--~~L~ls~~~~~ 615 (673)
T 1uaa_A 553 QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQ--KELTFTLCKER 615 (673)
T ss_dssp EEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEE--EEEEEEECSSC
T ss_pred EEEeeeecccccCCEEEEecCcCCCCCCcccCcchhHHHHHHHHHHHHHhhh--heEEEEEeccc
Confidence 5689999999999999985 3222332 227899999999 78988876443
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.31 E-value=0.00059 Score=65.91 Aligned_cols=46 Identities=24% Similarity=0.430 Sum_probs=35.3
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcCc--------------CCCeEEEeecccCCCCcEEEec
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVFT--------------HGQLYVAVSRVTTREGLTILNA 211 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~~--------------~g~~YvAlSR~~~~~~l~i~~~ 211 (245)
--||+|+|+|+.|+.|+|. +..+.|. ..++|||+||++ +.|+|...
T Consensus 560 ~lmTiH~aKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~eEErRL~YVaiTRA~--~~L~ls~~ 620 (724)
T 1pjr_A 560 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAE--EELVLTSA 620 (724)
T ss_dssp EEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEE--EEEEEEEE
T ss_pred EEEeeehhcCCCCCEEEEeCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHh--heEEEEee
Confidence 5689999999999999985 3222232 237899999999 68888764
No 8
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.27 E-value=0.00043 Score=65.74 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=45.8
Q ss_pred eeeehhhhcCCccceEEEEcCCC------cC--cCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHhhHh
Q 044416 164 FAMMINKSQGQSLKHVGLYLSKQ------VF--THGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQNIH 234 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~~------~~--~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~~~~ 234 (245)
...|+|++||++.|-|++.+-.. .| +...+|||+||+| .+|.|++... ...++..+++++.-++
T Consensus 532 ~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk--~~L~ivg~~~-----~l~~~~~~~~li~~~~ 603 (624)
T 2gk6_A 532 EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR--YGVIIVGNPK-----ALSKQPLWNHLLNYYK 603 (624)
T ss_dssp EEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEE--EEEEEEECHH-----HHTTSHHHHHHHHHHH
T ss_pred EEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhh--CcEEEEECHH-----HHccChHHHHHHHHHH
Confidence 35699999999999999976421 13 3458899999999 5898888522 2334566777766653
No 9
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.22 E-value=0.00059 Score=64.49 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=35.9
Q ss_pred eeeehhhhcCCccceEEEE-cCCCcCcC--------------CCeEEEeecccCCCCcEEEecC
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSKQVFTH--------------GQLYVAVSRVTTREGLTILNAD 212 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~~~~~~--------------g~~YvAlSR~~~~~~l~i~~~~ 212 (245)
--||+|+|+|+.||.|+|. +..+.|.+ .++|||+||++ +.|+|....
T Consensus 555 ~l~TiH~aKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~~eeErrL~YVa~TRAk--~~L~ls~~~ 616 (647)
T 3lfu_A 555 QLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAM--QKLTLTYAE 616 (647)
T ss_dssp EEEETGGGTTCCEEEEEECCCBTBTTTBTTCC--CTTHHHHHHHHHHHHTTEE--EEEEEEEEE
T ss_pred EEEeeecccCccCCEEEEeCCcCCCCCCcccccCchhHHHHHHHHHHHHhHHh--hheEEEEec
Confidence 5699999999999999985 33323321 37899999999 678887753
No 10
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.92 E-value=0.0015 Score=63.83 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=46.4
Q ss_pred eeeehhhhcCCccceEEEEcCCCc------C--cCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHhhHh
Q 044416 164 FAMMINKSQGQSLKHVGLYLSKQV------F--THGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQNIH 234 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~~~------~--~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~~~~ 234 (245)
...|+|++||++.|-|++.+.... | +...+|||+||+| .+|.|++... ...++..+++++.-++
T Consensus 708 ~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk--~~LiIvG~~~-----~l~~~~~w~~ll~~~~ 779 (800)
T 2wjy_A 708 EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR--YGVIIVGNPK-----ALSKQPLWNHLLNYYK 779 (800)
T ss_dssp EEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEE--EEEEEEECHH-----HHTSSHHHHHHHHHHH
T ss_pred EEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhh--ccEEEEECHH-----HhccCHHHHHHHHHHH
Confidence 356999999999999999865321 2 3457899999999 5898888532 2345667777766663
No 11
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.36 E-value=0.0035 Score=64.03 Aligned_cols=19 Identities=26% Similarity=0.189 Sum_probs=17.2
Q ss_pred eeeehhhhcCCccceEEEE
Q 044416 164 FAMMINKSQGQSLKHVGLY 182 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~ 182 (245)
--||||+|.|+.++.|+|.
T Consensus 789 ~ImTIH~SKGLEfpvVfl~ 807 (1232)
T 3u4q_A 789 RLMTIHSSKGLEFPVVFVA 807 (1232)
T ss_dssp EEEEGGGTTTCCEEEEEEE
T ss_pred EEecchhccCCCCCEEEEc
Confidence 4689999999999999986
No 12
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=95.36 E-value=0.0014 Score=66.56 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=33.7
Q ss_pred eeeehhhhcCCccceEEEE-cCC------CcC-----------------------------cCCCeEEEeecccCCCCcE
Q 044416 164 FAMMINKSQGQSLKHVGLY-LSK------QVF-----------------------------THGQLYVAVSRVTTREGLT 207 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~-l~~------~~~-----------------------------~~g~~YvAlSR~~~~~~l~ 207 (245)
--||||||+|+.++.|+|. +.. +.+ +..++|||+||++ +.|+
T Consensus 737 ~ImTIHkSKGLEfpvVfl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk--~~L~ 814 (1180)
T 1w36_B 737 QIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV--WHCS 814 (1180)
T ss_dssp EEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE
T ss_pred EEEEEeccCCCcCCEEEEeccccCCCCCCCeeecCCCcceeecCCCcHHHHHHHHHHHHHHHhhHHhhhhcchh--hheE
Confidence 5689999999999999983 110 001 1126899999999 6888
Q ss_pred EEec
Q 044416 208 ILNA 211 (245)
Q Consensus 208 i~~~ 211 (245)
|...
T Consensus 815 l~~~ 818 (1180)
T 1w36_B 815 LGVA 818 (1180)
T ss_dssp EEEC
T ss_pred EEee
Confidence 8754
No 13
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.0062 Score=59.53 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=45.4
Q ss_pred eeeehhhhcCCccceEEEEcCCC------cC--cCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHhhHh
Q 044416 164 FAMMINKSQGQSLKHVGLYLSKQ------VF--THGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQNIH 234 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~~------~~--~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~~~~ 234 (245)
...|+|+.||++.|-|++.+-.. .| +...+|||+||+| .+|.|++... ...++-.+++++.-++
T Consensus 710 ~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk--~~LiIvg~~~-----~l~~~~~w~~ll~~~~ 781 (802)
T 2xzl_A 710 EVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAK--YGLVILGNPR-----SLARNTLWNHLLIHFR 781 (802)
T ss_dssp EEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEE--EEEEEEECHH-----HHTTSHHHHHHHHHHH
T ss_pred EEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhh--CeEEEEECHH-----HhccChHHHHHHHHHH
Confidence 45699999999999999875421 12 3347899999999 5898887422 2344566777766553
No 14
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.35 E-value=0.012 Score=56.01 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=44.2
Q ss_pred eeeehhhhcCCccceEEEEcCCC------cC--cCCCeEEEeecccCCCCcEEEecCCCCcccccccceehHHHHhhH
Q 044416 164 FAMMINKSQGQSLKHVGLYLSKQ------VF--THGQLYVAVSRVTTREGLTILNADQEVEDRTFIKNIVYKEVFQNI 233 (245)
Q Consensus 164 yA~TiHKsQG~t~d~v~v~l~~~------~~--~~g~~YvAlSR~~~~~~l~i~~~~~~~~~~~~~~n~~~~~~~~~~ 233 (245)
...|||+.||++.|-|++.+-+. .| +..-+.||+|||| .+|.|++... ...++-.++++++-+
T Consensus 558 ~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk--~~liivGn~~-----~l~~~~~~~~li~~~ 628 (646)
T 4b3f_X 558 EIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRAR--RHVAVICDSR-----TVNNHAFLKTLVEYF 628 (646)
T ss_dssp EEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEE--EEEEEEECHH-----HHTTSHHHHHHHHHH
T ss_pred EECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhh--CeEEEEEchH-----HhcCCHHHHHHHHHH
Confidence 35699999999999999976321 12 2235799999999 6899988421 234455677776655
No 15
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=80.73 E-value=0.62 Score=47.11 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=45.3
Q ss_pred cCcceeeeeehhhhcCCccceEEEE-cCCCc---------C----------c-------CCCeEEEeecccCCCCcEEEe
Q 044416 158 LPLAPCFAMMINKSQGQSLKHVGLY-LSKQV---------F----------T-------HGQLYVAVSRVTTREGLTILN 210 (245)
Q Consensus 158 ~Pl~~ayA~TiHKsQG~t~d~v~v~-l~~~~---------~----------~-------~g~~YvAlSR~~~~~~l~i~~ 210 (245)
+|..----||+|.|.|+.++.|++. +..+. | + ..++|||+||++ +.|+|..
T Consensus 654 ~~~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~--~~L~LSy 731 (1122)
T 1w36_C 654 FLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQ--QKLYISY 731 (1122)
T ss_dssp TTSSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEE--EEEEEEE
T ss_pred CCCCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhc--CeEEEEE
Confidence 3433345689999999999999885 22211 1 1 115899999999 6898887
Q ss_pred cCCC-CcccccccceehHHHHhhH
Q 044416 211 ADQE-VEDRTFIKNIVYKEVFQNI 233 (245)
Q Consensus 211 ~~~~-~~~~~~~~n~~~~~~~~~~ 233 (245)
.... .......--.+..|+-.-+
T Consensus 732 ~~~~~~~g~~~~PSrfL~eL~~~l 755 (1122)
T 1w36_C 732 IGRSIQDNSERFPSVLVQELIDYI 755 (1122)
T ss_dssp ECBCSSSCCBCCBCHHHHHHHHHH
T ss_pred eCCcCCCCCcCCCCHHHHHHHHHH
Confidence 6432 1211223334455554433
No 16
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.93 E-value=2.6 Score=42.66 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=35.2
Q ss_pred eeeeehhhhcCCccceEEEE------cCCC----cC----------------cC----------CCeEEEeecccCCCCc
Q 044416 163 CFAMMINKSQGQSLKHVGLY------LSKQ----VF----------------TH----------GQLYVAVSRVTTREGL 206 (245)
Q Consensus 163 ayA~TiHKsQG~t~d~v~v~------l~~~----~~----------------~~----------g~~YvAlSR~~~~~~l 206 (245)
---+|+|.|+|+.++.|++. +|+. .| .+ -++|+|+||++ +.|
T Consensus 588 V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~--~~L 665 (1166)
T 3u4q_B 588 VFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPS--DRL 665 (1166)
T ss_dssp EEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCS--SEE
T ss_pred EEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhccc--CeE
Confidence 35689999999999999986 2211 11 00 14899999999 688
Q ss_pred EEEecCC
Q 044416 207 TILNADQ 213 (245)
Q Consensus 207 ~i~~~~~ 213 (245)
+|.....
T Consensus 666 ~lsy~~~ 672 (1166)
T 3u4q_B 666 YVSYPIA 672 (1166)
T ss_dssp EEEEESS
T ss_pred EEEEecc
Confidence 8887644
No 17
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=60.25 E-value=19 Score=24.73 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.9
Q ss_pred CcceeeeeccceEee-ecc
Q 044416 82 NHDIRLKEGAPVMLL-RNL 99 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~-~Nl 99 (245)
|..+.+++|++|.|. .|.
T Consensus 27 P~~i~v~~G~tV~~~~~n~ 45 (100)
T 4hci_A 27 PNVITIPINESTTLLLKNK 45 (100)
T ss_dssp SSEEEECTTSCEEEEEEEC
T ss_pred CCEEEECCCCEEEEEEEcC
Confidence 678999999999886 453
No 18
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=34.55 E-value=15 Score=28.19 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=20.3
Q ss_pred ceeeeeccceEeeeccCCC--CC-eeecceEEE
Q 044416 84 DIRLKEGAPVMLLRNLNQI--EG-LCNGTRLIV 113 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~--~g-l~NG~~g~V 113 (245)
--.|.+|+.||+..|.+.+ +| ++...+-..
T Consensus 90 w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~ 122 (161)
T 3db3_A 90 WQDLEVGQVVMLNYNPDNPKERGFWYDAEISRK 122 (161)
T ss_dssp GGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEE
T ss_pred HHHCCcCcEEEEecCCCCccccceeEEEEEeee
Confidence 4468899999999997644 45 344444433
No 19
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=33.45 E-value=63 Score=22.89 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=30.9
Q ss_pred eeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEE
Q 044416 86 RLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQR 139 (245)
Q Consensus 86 ~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~ 139 (245)
.+.+||+|.+.+.- + .+.-|+.|.|..-......++.. -...|...++..
T Consensus 21 ~l~pGM~VR~~~dy--e-ev~~GD~G~vl~s~~Gl~~vQv~-W~~~G~TyWV~~ 70 (105)
T 2jng_A 21 TLQPGMRVRMLDDY--E-EISAGDEGEFRQSNNGVPPVQVF-WESTGRTYWVHW 70 (105)
T ss_dssp HCCTTCEEEECSCB--T-TBCTTCEEEEEEECTTSSEEEEE-ETTTTEEEEEEG
T ss_pred cCCCccEEeeehhh--h-hhccCCceeEEecCCCCccceee-ehhcCceEEEEe
Confidence 56789999998853 3 57889999998332332333332 234565555543
No 20
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=30.04 E-value=43 Score=20.50 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=14.5
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 19 ~~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 19 PEDLEFQEGDIILVLSK 35 (62)
T ss_dssp SSBCCBCSSCEEEEEEE
T ss_pred CCCccCCCCCEEEEEEe
Confidence 36889999999999876
No 21
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=29.49 E-value=43 Score=21.02 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.3
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 15 ~~eLs~~~Gd~i~v~~~ 31 (65)
T 2nwm_A 15 PKELTLQKGDIVYIHKE 31 (65)
T ss_dssp TTBCCBCTTCEEEEEEC
T ss_pred cCccCCcCCCEEEEEEe
Confidence 36889999999998865
No 22
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=28.51 E-value=37 Score=21.34 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.2
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 22 ~~eLs~~~Gd~i~v~~~ 38 (67)
T 2eyx_A 22 KTALALEVGELVKVTKI 38 (67)
T ss_dssp SSBCCBCSSEEEEEEEE
T ss_pred CCccccCCCCEEEEEEe
Confidence 35889999999998865
No 23
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=27.63 E-value=42 Score=21.57 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=14.5
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 25 ~~eLs~~~Gd~i~v~~~ 41 (73)
T 2ebp_A 25 TDSLKLKKGDIIDIISK 41 (73)
T ss_dssp CSBCCBCSSCEEEEEEC
T ss_pred CCccCCCCCCEEEEEEe
Confidence 36899999999998875
No 24
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=27.58 E-value=43 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=14.4
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 15 ~~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 15 EDELGFRSGEVVEVLDS 31 (58)
T ss_dssp TTBCCBCTTCEEEEEEC
T ss_pred cCCCCCCCCCEEEEEEE
Confidence 36889999999999875
No 25
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=27.25 E-value=39 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=18.0
Q ss_pred CcceeeeeccceEeeeccCCCCCeeec
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
+..|.|+.|+.|.++.-. .+.|+.-|
T Consensus 24 ~~eLsf~~Gd~i~v~~~~-~~~gWw~g 49 (80)
T 2i0n_A 24 TSLLPFKRNDIITITFKD-QENKWFMG 49 (80)
T ss_dssp SSSCCBCSSEEEEEEEES-SSSSEEEE
T ss_pred CCCcCCCCCCEEEEEEec-CCCCEEEE
Confidence 468899999999998763 23335444
No 26
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=26.32 E-value=44 Score=21.17 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.4
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 17 ~~eLsf~~Gd~i~v~~~ 33 (68)
T 2ew3_A 17 QGELGFKEGDIITLTNQ 33 (68)
T ss_dssp TTBCCBCTTCEEEEEEE
T ss_pred CCccCCCCCCEEEEEEe
Confidence 36889999999999875
No 27
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=26.08 E-value=32 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=25.5
Q ss_pred cceeeeeccceEeeeccCC-----CCCeeecceEEEEec
Q 044416 83 HDIRLKEGAPVMLLRNLNQ-----IEGLCNGTRLIVTRL 116 (245)
Q Consensus 83 ~~l~l~~G~~Vml~~Nl~~-----~~gl~NG~~g~V~~i 116 (245)
..-.+++|++|++ +|+.+ -.+++-|..|+|+.+
T Consensus 127 ~~~~F~vGd~Vrv-~~~~~~~HtR~P~Y~RG~~G~I~~~ 164 (219)
T 3qyh_B 127 ARARFAVGDKVRV-LNKNPVGHTRMPRYTRGKVGTVVID 164 (219)
T ss_dssp SCCCCCTTCEEEE-CCCCCSSCCCSCGGGTTCEEEEEEE
T ss_pred CCCCCCCCCEEEE-CCCCCCCcccccHHHCCCeeEEEEE
Confidence 3467999999997 56443 247999999999876
No 28
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=26.04 E-value=46 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=17.0
Q ss_pred cceeeeeccceEeeeccCCCCCeeec
Q 044416 83 HDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 83 ~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
..|.++.|+.|.++... ..++.-|
T Consensus 4 ~eLs~~~Gd~i~v~~~~--~~~Ww~g 27 (63)
T 1tuc_A 4 REVTMKKGDILTLLNST--NKDWWKV 27 (63)
T ss_dssp CCCCBCTTCEEEEEECC--SSSEEEE
T ss_pred cccCCCCCCEEEEEEec--CCCEEEE
Confidence 57889999999998763 2345443
No 29
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=25.68 E-value=54 Score=20.76 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=17.0
Q ss_pred CcceeeeeccceEeeeccCCCCCee
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLC 106 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~ 106 (245)
+..|.|+.|+.|.++... +.|+.
T Consensus 20 ~~ELs~~~Gd~i~v~~~~--~~gWw 42 (65)
T 2lj0_A 20 DDELELRDGDIVDVMEKC--DDGWF 42 (65)
T ss_dssp TTBCCBCTTCEEEEEEEC--TTSEE
T ss_pred cCCcCCCCCCEEEEeEeC--CCCEE
Confidence 368999999999988753 23454
No 30
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=25.64 E-value=33 Score=25.30 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.6
Q ss_pred ceeeeeccceEeeeccCC-----CCCeeecceEEEEec
Q 044416 84 DIRLKEGAPVMLLRNLNQ-----IEGLCNGTRLIVTRL 116 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~-----~~gl~NG~~g~V~~i 116 (245)
.-.+++|++|.+. |+.+ -.+++-|..|+|+.+
T Consensus 34 ~prF~vGDrVrvr-~~~p~gHtRlP~YvRGk~G~I~~~ 70 (126)
T 2zzd_A 34 KSKFNVGDRVRIK-DLPDLFYTRTMTYTRGATGTIVRL 70 (126)
T ss_dssp SCSSCTTCEEEEC-CCCCSSCCSSCGGGTTCEEEEEEE
T ss_pred CCccCCCCEEEEc-cCCCCCceeccHHhCCCEEEEEEE
Confidence 4468999999874 6443 247999999999876
No 31
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=25.49 E-value=48 Score=19.95 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=14.4
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 16 ~~eLs~~~Gd~i~v~~~ 32 (58)
T 1zx6_A 16 DGDLGLKPGDKVQLLEK 32 (58)
T ss_dssp TTBCCBCTTCEEEEEEE
T ss_pred CCCccCCCCCEEEEEEe
Confidence 36889999999999875
No 32
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=24.54 E-value=36 Score=17.20 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.8
Q ss_pred ehHHHHhhHhhh
Q 044416 225 VYKEVFQNIHTS 236 (245)
Q Consensus 225 ~~~~~~~~~~~~ 236 (245)
-|+||+.|||..
T Consensus 4 eyqemlenlrea 15 (26)
T 2dpr_A 4 EYQEMLENLREA 15 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999754
No 33
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=24.49 E-value=50 Score=20.65 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=16.9
Q ss_pred cceeeeeccceEeeeccCCCCCeeec
Q 044416 83 HDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 83 ~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
..|.|+.|+.|.++.-. ..|+.-|
T Consensus 18 ~eLsf~~Gd~i~v~~~~--~~~Ww~g 41 (67)
T 2bzy_A 18 TALALEVGDIVKVTRMN--INGQWEG 41 (67)
T ss_dssp TBCCBCTTCEEEEEEEC--SSSEEEE
T ss_pred CccccCCCCEEEEEEec--CCCeEEE
Confidence 58899999999988652 3344433
No 34
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=24.41 E-value=46 Score=21.49 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.0
Q ss_pred cceeeeeccceEeeeccCCCCCeeec
Q 044416 83 HDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 83 ~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
..|.|+.|+.|.++.. +.+.|+.-|
T Consensus 33 ~eLsf~~Gd~i~v~~~-~~~~gWw~g 57 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKA-EAEHNWWEG 57 (78)
T ss_dssp CCCCBCTTCEEEEEEC-CSSCSCEEE
T ss_pred CccCCCCCCEEEEEEc-CCCCCeEEE
Confidence 6899999999998876 224555444
No 35
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=24.38 E-value=35 Score=27.87 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=24.9
Q ss_pred ceeeeeccceEeeeccCC-----CCCeeecceEEEEec
Q 044416 84 DIRLKEGAPVMLLRNLNQ-----IEGLCNGTRLIVTRL 116 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~-----~~gl~NG~~g~V~~i 116 (245)
.-++++|++|++ +|+.+ -.+++-|..|+|+.+
T Consensus 139 ~~~F~vGd~Vrv-~~~~~~~HtR~P~Y~RG~~G~I~~~ 175 (229)
T 3hht_B 139 SPRFKVGERIKT-KNIHPTGHTRFPRYARDKYGVIDEV 175 (229)
T ss_dssp CCSCCTTCEEEE-CCCCCSSCCSCCGGGTTCEEEEEEE
T ss_pred CCCCCCCCEEEE-CCCCCCCcccCcHHHCCCeeEEEEE
Confidence 456999999997 56443 247999999999876
No 36
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=23.87 E-value=53 Score=19.72 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=17.6
Q ss_pred CcceeeeeccceEeeeccCCCCCeeec
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
+..|.++.|+.|.++... ..|+.-|
T Consensus 15 ~~eLs~~~Gd~i~v~~~~--~~~Ww~g 39 (58)
T 2bz8_A 15 DDELTISVGEIITNIRKE--DGGWWEG 39 (58)
T ss_dssp TTBCCBCTTCEEEEEECC--TTTEEEE
T ss_pred cCEeeECCCCEEEEEEeC--CCCEEEE
Confidence 368999999999988753 3445433
No 37
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=23.83 E-value=56 Score=19.26 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=14.5
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 14 ~~eLs~~~Gd~i~v~~~ 30 (54)
T 2a28_A 14 DDEISIDPGDIITVIRG 30 (54)
T ss_dssp TTBCCBCTTCEEEEEEC
T ss_pred CCCccCCCCCEEEEEEe
Confidence 36889999999998876
No 38
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=23.69 E-value=57 Score=19.59 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=14.3
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 17 ~~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 17 PDELYFEEGDIIYITDM 33 (58)
T ss_dssp TTBCCBCTTCEEEEEEC
T ss_pred CCCccCCCCCEEEEEEe
Confidence 36889999999999875
No 39
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=23.47 E-value=80 Score=20.24 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=25.2
Q ss_pred eeccceEeeeccCCCCCeeecceEEEEecCCcceEEEE
Q 044416 88 KEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDI 125 (245)
Q Consensus 88 ~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~ 125 (245)
-+|+.|.+. | ....+||-.|.|..+..+...+.|
T Consensus 3 lPG~~V~V~-n---p~~~Yy~y~G~VQRvsdgkaaVLF 36 (66)
T 2jz2_A 3 FPGATVRVT-N---VDDTYYRFEGLVQRVSDGKAAVLF 36 (66)
T ss_dssp CTTCEEEEC-C---TTSTTBTCEEEEEEEETTEEEEEE
T ss_pred cCCCEEEEe-C---CCCcccceeEEEEEecCCcEEEEe
Confidence 468888763 3 356899999999999877665555
No 40
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=23.35 E-value=78 Score=18.84 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=14.5
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 15 ~~eLs~~~Gd~i~v~~~ 31 (58)
T 1zuu_A 15 DDEITITPGDKISLVAR 31 (58)
T ss_dssp TTBCCBCTTCCEEEEEC
T ss_pred CCcccCCCCCEEEEeEc
Confidence 36899999999999875
No 41
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=22.93 E-value=60 Score=19.39 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.3
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 16 ~~eLs~~~Gd~i~v~~~ 32 (58)
T 1sem_A 16 SGELAFKRGDVITLINK 32 (58)
T ss_dssp TTBCCBCTTCEEEEEEC
T ss_pred CCCcCCCCCCEEEEEEe
Confidence 36889999999998875
No 42
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.86 E-value=48 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.420 Sum_probs=17.8
Q ss_pred CcceeeeeccceEeeeccCCCCCeeec
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
+..|.|+.|+.|.++...+ +.|+.-|
T Consensus 28 ~~eLsf~~Gd~i~v~~~~~-~~gWw~g 53 (76)
T 2csi_A 28 EAELTFCTGDIITVFGEID-EDGFYYG 53 (76)
T ss_dssp TTSCCCCTTCEEEEESSCC-SSSEEEE
T ss_pred CCcccCCCCCEEEEeEecC-CCCeEEE
Confidence 3689999999999987532 2345433
No 43
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.74 E-value=50 Score=20.61 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=23.8
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCCc
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKW 119 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~ 119 (245)
...+.+|+.|.++. |=+.|-.|+|.++..+
T Consensus 5 ~~~f~~GD~V~V~~------Gpf~g~~G~V~evd~e 34 (59)
T 2e6z_A 5 SSGFQPGDNVEVCE------GELINLQGKILSVDGN 34 (59)
T ss_dssp CSSCCTTSEEEECS------STTTTCEEEECCCBTT
T ss_pred cccCCCCCEEEEee------cCCCCCEEEEEEEeCC
Confidence 45678999998863 4678999999998765
No 44
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=22.56 E-value=81 Score=19.70 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=17.3
Q ss_pred CcceeeeeccceEeeeccCCCCCee
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLC 106 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~ 106 (245)
+..|.|+.|+.|.++.. ....|+.
T Consensus 20 ~~eLs~~~Gd~i~v~~~-~~~~~Ww 43 (71)
T 2jt4_A 20 QDELTIKSGDKVYILDD-KKSKDWW 43 (71)
T ss_dssp TTBCCBCTTCEEEEEES-SSCSSEE
T ss_pred CCcccCCCCCEEEEEEC-CCCCCCE
Confidence 36889999999999875 2244554
No 45
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.11 E-value=60 Score=21.01 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=14.3
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 31 ~~eLsf~~Gd~i~v~~~ 47 (78)
T 2ed0_A 31 EDELSFQEGAIIYVIKK 47 (78)
T ss_dssp TTBCCBCSSCEEEEEEE
T ss_pred cCcccccCCCEEEEEEe
Confidence 46899999999998875
No 46
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=22.05 E-value=61 Score=19.65 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=17.6
Q ss_pred CcceeeeeccceEeeeccCCCCCeeec
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
+..|.++.|+.|.++... +.|+.-|
T Consensus 18 ~~eLs~~~Gd~i~v~~~~--~~~W~~g 42 (60)
T 1w70_A 18 KLELNFKAGDVIFLLSRI--NKDWLEG 42 (60)
T ss_dssp TTBCCBCTTCEEEEEEEC--SSSEEEE
T ss_pred CCCccCCCCCEEEEEEeC--CCCeEEE
Confidence 357899999999998753 3445433
No 47
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=21.96 E-value=82 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.008 Sum_probs=28.0
Q ss_pred ceeeeeccceEeeeccCCCCCeeecceEEEEecCCcceEEEEEeeccCCeeEEEEEEe
Q 044416 84 DIRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWSIRGDIISGTNIGQNVTIQRII 141 (245)
Q Consensus 84 ~l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~~~~~~~~~~~~g~~v~i~~~~ 141 (245)
.-.+++||.|.+ +|..|+|.++.......+. .+|..+.+|--.
T Consensus 126 ~~pf~vGD~I~i-----------~~~~G~V~~I~l~~T~i~t----~d~~~v~iPN~~ 168 (285)
T 3udc_A 126 EDQFSVGDYVTI-----------NGISGTVEEIGLRVTKIRG----FSDGLHIIPNGE 168 (285)
T ss_dssp TTSCCTTCEEEE-----------TTEEEEEEEECSSEEEEEE----TTTEEEEEEGGG
T ss_pred hCCccCCCEEEE-----------CCEEEEEEEeeeeEEEEec----CCCCEEEecccc
Confidence 335788998865 4778999999765333322 356677776433
No 48
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=21.88 E-value=60 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=14.3
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 18 ~~eLs~~~Gd~i~v~~~ 34 (59)
T 2g6f_X 18 EDELSFSKGDVIHVTRV 34 (59)
T ss_dssp TTBCCBCTTCEEEEEEE
T ss_pred cCCcCCCCCCEEEEEEe
Confidence 36889999999998875
No 49
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=21.86 E-value=60 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=17.6
Q ss_pred CcceeeeeccceEeeeccCCCCCeeec
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
+..|.++.|+.|.++... ..|+.-|
T Consensus 15 ~~eLs~~~Gd~i~v~~~~--~~~W~~g 39 (58)
T 4e6r_A 15 EDELSLVXGSRVTVMEXC--SDGWWRG 39 (58)
T ss_dssp TTBCCBCTTCEEEEEEEC--TTSEEEE
T ss_pred CCEeeEeCCCEEEEeEcC--CCCEEEE
Confidence 367999999999988653 3445444
No 50
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=21.55 E-value=91 Score=18.62 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=17.0
Q ss_pred CcceeeeeccceEeeeccCCCCCee
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLC 106 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~ 106 (245)
+..|.|+.|+.|.++.. ....|+.
T Consensus 16 ~~eLs~~~Gd~i~v~~~-~~~~~Ww 39 (60)
T 2v1q_A 16 QDELTIKSGDKVYILDD-KKSKDWW 39 (60)
T ss_dssp TTBCCBCTTCEEEEEES-SSCSSEE
T ss_pred CCCccCCCCCEEEEEeC-CCCCCCE
Confidence 36889999999999875 2234444
No 51
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=21.54 E-value=49 Score=20.12 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=14.3
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 20 ~~eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 20 ARELSFKKGASLLLYHR 36 (60)
T ss_dssp TTBCCBCTTCEEEEEEE
T ss_pred cCCcCCCCCCEEEEEEe
Confidence 36889999999998875
No 52
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=67 Score=21.32 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 32 ~~eLsf~~Gd~i~v~~~ 48 (88)
T 2dbk_A 32 KTALALEVGDIVKVTRM 48 (88)
T ss_dssp SSBCCBCTTCEEEEEEE
T ss_pred CCcccCCCCCEEEEEEe
Confidence 46799999999998865
No 53
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.23 E-value=43 Score=19.98 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=14.2
Q ss_pred ehHHHHhhHhhhhhhhh
Q 044416 225 VYKEVFQNIHTSAHKIK 241 (245)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ 241 (245)
+-+|++..+|.+.+|+|
T Consensus 12 ~KqEIL~E~RkElqK~K 28 (45)
T 1use_A 12 VKQELLEEVKKELQKVK 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34689999999999986
No 54
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.01 E-value=67 Score=20.59 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=17.9
Q ss_pred CcceeeeeccceEeeeccCCCCCeeec
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNG 108 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG 108 (245)
+..|.|+.|+.|.++.. +.+.|+.-|
T Consensus 24 ~~eLs~~~Gd~i~v~~~-~~~~gW~~g 49 (77)
T 2enm_A 24 NNELTVTEGEIITVTNP-NVGGGWLEG 49 (77)
T ss_dssp SSBCCCCTTCEEEEEES-CCSSSEEEE
T ss_pred CCeecCCCCCEEEEeEc-cCCCCeEEE
Confidence 36899999999999875 223455433
No 55
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=20.89 E-value=61 Score=20.19 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.1
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 21 ~~eLs~~~Gd~i~v~~~ 37 (68)
T 2djq_A 21 PGDLKFNKGDVILLRRQ 37 (68)
T ss_dssp TTCCCCCTTCEEEEEEC
T ss_pred cCCccCCCCCEEEEEEe
Confidence 36889999999998765
No 56
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=20.88 E-value=64 Score=20.51 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=14.5
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.++.|+.|.++..
T Consensus 27 ~~eLs~~~Gd~i~v~~~ 43 (73)
T 3c0c_A 27 DGELGFREGDLITLTNQ 43 (73)
T ss_dssp TTBCCBCTTCEEEEEEE
T ss_pred CCCccCcCCCEEEEEEe
Confidence 36899999999999875
No 57
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=20.28 E-value=67 Score=19.59 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.5
Q ss_pred CcceeeeeccceEeeeccCCCCCeeecc
Q 044416 82 NHDIRLKEGAPVMLLRNLNQIEGLCNGT 109 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~Nl~~~~gl~NG~ 109 (245)
+..|.|+.|+.|.++.. +...|+.-|.
T Consensus 15 ~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~ 41 (62)
T 2j6f_A 15 DDELTIRVGEIIRNVKK-LQEEGWLEGE 41 (62)
T ss_dssp TTBCCBCTTCEEEEEEE-CSSTTEEEEE
T ss_pred cCCcCCcCCCEEEEEEe-cCCCCEEEEE
Confidence 36889999999988875 2344555443
No 58
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.14 E-value=70 Score=19.98 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=14.2
Q ss_pred CcceeeeeccceEeeec
Q 044416 82 NHDIRLKEGAPVMLLRN 98 (245)
Q Consensus 82 ~~~l~l~~G~~Vml~~N 98 (245)
+..|.|+.|+.|.++..
T Consensus 21 ~~eLs~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 21 KEELQVMPGNIVFVLKK 37 (68)
T ss_dssp SSSCCCCTTCEEEECEE
T ss_pred cCCCCCCCCCEEEEEEe
Confidence 36889999999998865
No 59
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=20.06 E-value=1.1e+02 Score=19.99 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=23.7
Q ss_pred eeeeeccceEeeeccCCCCCeeecceEEEEecCCcc
Q 044416 85 IRLKEGAPVMLLRNLNQIEGLCNGTRLIVTRLGKWS 120 (245)
Q Consensus 85 l~l~~G~~Vml~~Nl~~~~gl~NG~~g~V~~i~~~~ 120 (245)
=.+++|+.|.++. |-.-|..|.|+.++.+.
T Consensus 16 K~F~~GDHVkVi~------G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 16 KYFKMGDHVKVIA------GRFEGDTGLIVRVEENF 45 (69)
T ss_dssp SSCCTTCEEEESS------STTTTCEEEEEEECSSC
T ss_pred eeccCCCeEEEec------cEEcCceEEEEEEeCCE
Confidence 3578999998864 46679999999998653
Done!