BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044417
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
 pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
          Length = 971

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 125 WQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSI 176
           W G + E+ N +Q   +P +    + WI + +L    IP +A+V   S+  +
Sbjct: 120 WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLT--AIPEEAQVIHTSVKRV 169


>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
 pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
          Length = 211

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 14  GSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDH-----DWLRAVRM 68
           G L  T + IAQ + +  +  +++    L  +++ +++V +  +  H     D++ A+RM
Sbjct: 44  GMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRM 103

Query: 69  TSYGFLLYGPGSYVWYQYLDHCMPK 93
              GF L G       Q +D  M K
Sbjct: 104 FLEGFRLPGEA-----QKIDRLMEK 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,671,111
Number of Sequences: 62578
Number of extensions: 213301
Number of successful extensions: 565
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 4
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)