Query 044417
Match_columns 188
No_of_seqs 109 out of 1004
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 1.9E-41 4.2E-46 272.1 12.7 162 5-188 49-213 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 1.4E-25 3.1E-30 148.6 2.3 67 122-188 1-68 (68)
3 TIGR02163 napH_ ferredoxin-typ 28.6 1.5E+02 0.0032 24.2 5.3 66 62-127 4-78 (255)
4 PF10929 DUF2811: Protein of u 27.9 88 0.0019 19.7 2.9 20 57-76 21-40 (57)
5 TIGR02230 ATPase_gene1 F0F1-AT 27.4 2.2E+02 0.0048 20.0 6.4 34 62-95 39-74 (100)
6 PF10766 DUF2592: Protein of u 19.3 1.7E+02 0.0037 17.0 2.7 19 6-24 13-31 (41)
7 PRK09609 hypothetical protein; 18.1 5.5E+02 0.012 22.0 6.7 54 12-94 58-111 (312)
8 COG1284 Uncharacterized conser 16.8 4.9E+02 0.011 21.8 6.1 24 6-29 113-150 (289)
9 PF03988 DUF347: Repeat of Unk 15.8 1.9E+02 0.0042 17.7 2.7 19 8-26 6-24 (55)
10 PF10960 DUF2762: Protein of u 13.0 2.7E+02 0.0058 18.3 2.9 24 99-122 4-27 (71)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=272.15 Aligned_cols=162 Identities=36% Similarity=0.603 Sum_probs=151.0
Q ss_pred ch-HHHHHHHHHHH-HHHHHHHhhhHhhhhcchhhhhhcccccccchhhhhhhccCCchHHHHHHHHHHhccchhhhHHH
Q 044417 5 FP-LKQAATAGSLA-FTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYV 82 (188)
Q Consensus 5 ~P-lt~~~t~~~l~-~~gD~~aQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~R~~~~~~~G~~~~gP~~~~ 82 (188)
+| ++++++++.+. .+||+++|.++...+.. ..++|+.|++||+++|+++.||..|+
T Consensus 49 ~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~----------------------~~~~d~~rtlr~~~~G~~f~gp~~~~ 106 (222)
T KOG1944|consen 49 YPLLTKAITTSLLLAAAGDVISQSLEGRSKKL----------------------FQTLDLTRTLRMGIFGFLFVGPTLHY 106 (222)
T ss_pred hhHHHHHHHHHHHHHHhchhhhhhhhhhcccc----------------------cccccHHHHHHHHhhhhheeccchhH
Confidence 67 78888887777 99999999998532110 25799999999999998899999999
Q ss_pred HHHHhhhhcCCCchhHHHHHHHHHhhhHhHHHHHHHHHHHHhhccC-cccchHHHHhhhHHHHHhcceehhhhhhheeee
Q 044417 83 WYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWV 161 (188)
Q Consensus 83 wy~~L~~~~p~~~~~~~~~Kvl~dq~i~~P~~~~~f~~~~~~l~G~-~~~~~~~l~~~~~~~l~~~~~~Wp~~~~inF~~ 161 (188)
||..||+.+|.++..++++|+++||++++|+.+.+||.+++++||+ .+++.++++++++|+++++|++||++|++||.+
T Consensus 107 Wy~~L~~~~p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~ 186 (222)
T KOG1944|consen 107 WYRLLSKLFPKKTLITVVKKVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRL 186 (222)
T ss_pred HHHHHHHHccCccHHHHHHHHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEE
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred ecCCchhhhhhhhHHHHHHHHhhccCC
Q 044417 162 IPLQARVAFMSMGSIFWNFYLSSTMSK 188 (188)
Q Consensus 162 vP~~~Rvl~~n~v~~~Wn~yLS~~~~~ 188 (188)
||+++|++++|+++++||+|||+++++
T Consensus 187 VP~~~rvl~~~~vsl~W~~~Ls~~~~~ 213 (222)
T KOG1944|consen 187 VPLQYRVLFVNIVSLVWNTYLSYKNAS 213 (222)
T ss_pred ccccceehhhhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999875
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.91 E-value=1.4e-25 Score=148.65 Aligned_cols=67 Identities=37% Similarity=0.711 Sum_probs=65.2
Q ss_pred HHhhccC-cccchHHHHhhhHHHHHhcceehhhhhhheeeeecCCchhhhhhhhHHHHHHHHhhccCC
Q 044417 122 NNLWQGT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK 188 (188)
Q Consensus 122 ~~~l~G~-~~~~~~~l~~~~~~~l~~~~~~Wp~~~~inF~~vP~~~Rvl~~n~v~~~Wn~yLS~~~~~ 188 (188)
|+++||+ ++++++++|++|+++++++|++|||+|++||.|||+++|++|+|+++++||+|||+++||
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 5789998 899999999999999999999999999999999999999999999999999999999997
No 3
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=28.57 E-value=1.5e+02 Score=24.20 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhccchhhhHHHHH--HHhh--h---hcCCCchhHHHHHHHHHhhhHhHHHHHHHH--HHHHhhcc
Q 044417 62 WLRAVRMTSYGFLLYGPGSYVWY--QYLD--H---CMPKQTAGNLMMKVLLNQIVLGPCVIAVCF--AWNNLWQG 127 (188)
Q Consensus 62 ~~R~~~~~~~G~~~~gP~~~~wy--~~L~--~---~~p~~~~~~~~~Kvl~dq~i~~P~~~~~f~--~~~~~l~G 127 (188)
++|+...++...++.||....|. ..|. + .+|-......+.-++....+..+++..... ...+++-|
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~l~~G 78 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGG 78 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhc
Confidence 67888888888877889877764 2221 2 345566777777777777766666665533 33345544
No 4
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.94 E-value=88 Score=19.70 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.1
Q ss_pred cCCchHHHHHHHHHHhccch
Q 044417 57 LLDHDWLRAVRMTSYGFLLY 76 (188)
Q Consensus 57 ~~~~D~~R~~~~~~~G~~~~ 76 (188)
...+|-.|.+.-++.||++.
T Consensus 21 hP~WDQ~Rl~~aALa~FL~Q 40 (57)
T PF10929_consen 21 HPNWDQYRLFQAALAGFLLQ 40 (57)
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 45899999999999998753
No 5
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.44 E-value=2.2e+02 Score=19.98 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccchhhhHHHHH--HHhhhhcCCCc
Q 044417 62 WLRAVRMTSYGFLLYGPGSYVWY--QYLDHCMPKQT 95 (188)
Q Consensus 62 ~~R~~~~~~~G~~~~gP~~~~wy--~~L~~~~p~~~ 95 (188)
++....+++.|.-+..|..-.-| .+||+.|+...
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 45666688888888888877776 88999998743
No 6
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=19.34 E-value=1.7e+02 Score=16.99 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044417 6 PLKQAATAGSLAFTGDTIA 24 (188)
Q Consensus 6 Plt~~~t~~~l~~~gD~~a 24 (188)
|..-++.-|.|+++|++.-
T Consensus 13 PVvma~ilglIyGlGevfN 31 (41)
T PF10766_consen 13 PVVMALILGLIYGLGEVFN 31 (41)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445677799999999873
No 7
>PRK09609 hypothetical protein; Provisional
Probab=18.05 E-value=5.5e+02 Score=21.96 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcchhhhhhcccccccchhhhhhhccCCchHHHHHHHHHHhccchhhhHHHHHHHhhhhc
Q 044417 12 TAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCM 91 (188)
Q Consensus 12 t~~~l~~~gD~~aQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~R~~~~~~~G~~~~gP~~~~wy~~L~~~~ 91 (188)
.+++..+++|++.=.+. ...+.+.=++.-++.|++ .|-+..+.|+.+.++|
T Consensus 58 ~G~ivG~lsDLLs~li~----------------------------pG~ffPgFTLsa~l~GlI-~Glf~~~~fk~~~~~f 108 (312)
T PRK09609 58 VGFFTGLLSDLISFLFV----------------------------PGVYHPYYTLAAMVYGFI-PGIVGWFFFKFGKKFF 108 (312)
T ss_pred HHHHHHHHHHHHHHHhc----------------------------CCccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45677778888874442 135778888888888875 7999889999999999
Q ss_pred CCC
Q 044417 92 PKQ 94 (188)
Q Consensus 92 p~~ 94 (188)
.++
T Consensus 109 ~~~ 111 (312)
T PRK09609 109 GKE 111 (312)
T ss_pred hHH
Confidence 754
No 8
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=16.77 E-value=4.9e+02 Score=21.84 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHH--------------HHHHhhhHh
Q 044417 6 PLKQAATAGSLAFTG--------------DTIAQLIQR 29 (188)
Q Consensus 6 Plt~~~t~~~l~~~g--------------D~~aQ~~~~ 29 (188)
|+-.++.+|++.|+| |++||.+.+
T Consensus 113 ~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~k 150 (289)
T COG1284 113 PLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNK 150 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 367889999998887 888888874
No 9
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=15.79 E-value=1.9e+02 Score=17.69 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 044417 8 KQAATAGSLAFTGDTIAQL 26 (188)
Q Consensus 8 t~~~t~~~l~~~gD~~aQ~ 26 (188)
++.++...-...||.++|.
T Consensus 6 a~ilt~~lGt~~~D~l~~~ 24 (55)
T PF03988_consen 6 AKILTTTLGTTAGDFLSKT 24 (55)
T ss_pred HHHHHHHhHHHHHHHHHhc
Confidence 5788888889999999884
No 10
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=12.98 E-value=2.7e+02 Score=18.26 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHH
Q 044417 99 LMMKVLLNQIVLGPCVIAVCFAWN 122 (188)
Q Consensus 99 ~~~Kvl~dq~i~~P~~~~~f~~~~ 122 (188)
-+.|+++.|-+|+-++...++...
T Consensus 4 ei~k~~~sQG~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 4 EIIKLALSQGIFAVLFVWLLFYVL 27 (71)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 357899999999988877666543
Done!