Query 044417
Match_columns 188
No_of_seqs 109 out of 1004
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 04:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044417.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044417hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 48.3 8.7 0.00063 21.3 3.0 31 59-89 7-43 (52)
2 d2vqca1 a.4.5.78 (A:4-73) F-11 16.8 34 0.0025 19.3 1.8 12 59-70 37-48 (70)
3 d1rh5b_ f.23.28.1 (B:) Preprot 7.9 1.5E+02 0.011 16.2 2.6 25 61-85 22-46 (56)
4 d1ee8a1 a.156.1.2 (A:122-210) 7.1 49 0.0035 19.9 0.2 17 99-115 24-40 (89)
5 d1r2za1 a.156.1.2 (A:135-228) 6.7 46 0.0033 20.3 -0.1 17 99-115 24-40 (94)
6 d1tdza1 a.156.1.2 (A:132-219) 6.5 43 0.0031 20.1 -0.4 17 99-115 24-40 (88)
7 d1jqra_ d.218.1.2 (A:) DNA pol 6.3 56 0.0041 22.2 0.2 16 153-168 159-174 (174)
8 d2b8ea2 d.220.1.1 (A:435-547) 6.2 1.3E+02 0.0093 18.4 2.0 13 2-14 25-37 (113)
9 d1k3xa1 a.156.1.2 (A:125-213) 5.8 41 0.003 20.2 -0.8 17 99-115 28-44 (89)
10 d3bz6a1 a.4.5.75 (A:13-96) Hyp 5.1 72 0.0052 19.2 0.1 11 5-15 29-40 (84)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=48.31 E-value=8.7 Score=21.34 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHhccchhhhHHHH------HHHhhh
Q 044417 59 DHDWLRAVRMTSYGFLLYGPGSYVW------YQYLDH 89 (188)
Q Consensus 59 ~~D~~R~~~~~~~G~~~~gP~~~~w------y~~L~~ 89 (188)
-+|++|++.-.....+.-+-..|+- |++||.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 5899999876665555567777765 566663
No 2
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=16.83 E-value=34 Score=19.26 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=8.9
Q ss_pred CchHHHHHHHHH
Q 044417 59 DHDWLRAVRMTS 70 (188)
Q Consensus 59 ~~D~~R~~~~~~ 70 (188)
.++..|++++.+
T Consensus 37 ayniqr~l~~ic 48 (70)
T d2vqca1 37 AYNIQRALKAIC 48 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 578888888754
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.88 E-value=1.5e+02 Score=16.23 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhccchhhhHHHHHH
Q 044417 61 DWLRAVRMTSYGFLLYGPGSYVWYQ 85 (188)
Q Consensus 61 D~~R~~~~~~~G~~~~gP~~~~wy~ 85 (188)
++.++...+..|++++|-+.+.-|-
T Consensus 22 Ef~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 22 EYLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888998888888766553
No 4
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=7.14 E-value=49 Score=19.88 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhHhHHHH
Q 044417 99 LMMKVLLNQIVLGPCVI 115 (188)
Q Consensus 99 ~~~Kvl~dq~i~~P~~~ 115 (188)
.++.+++||-+++-+-+
T Consensus 24 ~ik~~LlDQ~~iaGiGN 40 (89)
T d1ee8a1 24 PLKALLLDQRLAAGVGN 40 (89)
T ss_dssp BHHHHHHHSSSSTTCCH
T ss_pred cHHHHHHhccccCCCCc
Confidence 47899999999987754
No 5
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.68 E-value=46 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhHhHHHH
Q 044417 99 LMMKVLLNQIVLGPCVI 115 (188)
Q Consensus 99 ~~~Kvl~dq~i~~P~~~ 115 (188)
.++.+++||.+++-+-+
T Consensus 24 ~ik~~LlDQ~~~aGiGN 40 (94)
T d1r2za1 24 SVKALLLDQTVVAGFGN 40 (94)
T ss_dssp BHHHHHHCTTTSSSCCH
T ss_pred cHHHHHHhccccCCccc
Confidence 57899999999988744
No 6
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=6.46 E-value=43 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhHhHHHH
Q 044417 99 LMMKVLLNQIVLGPCVI 115 (188)
Q Consensus 99 ~~~Kvl~dq~i~~P~~~ 115 (188)
.++.+++||.+++-+-+
T Consensus 24 ~ik~~LldQ~~iaGIGN 40 (88)
T d1tdza1 24 KIKPYLLEQTLVAGLGN 40 (88)
T ss_dssp BHHHHHHTSSSSSCCCH
T ss_pred cHHHHHHhccccCCcCh
Confidence 57999999999987754
No 7
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=6.32 E-value=56 Score=22.19 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=12.8
Q ss_pred hhhhheeeeecCCchh
Q 044417 153 PVSILNFWVIPLQARV 168 (188)
Q Consensus 153 ~~~~inF~~vP~~~Rv 168 (188)
+.+.++.-||||+.|+
T Consensus 159 If~~LGl~yipPe~R~ 174 (174)
T d1jqra_ 159 LIKELGFTYRIPKKRL 174 (174)
T ss_dssp HHHHHTCCCCCGGGCC
T ss_pred HHHHcCCCCCChHhcC
Confidence 3677888899999885
No 8
>d2b8ea2 d.220.1.1 (A:435-547) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.20 E-value=1.3e+02 Score=18.42 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=9.0
Q ss_pred CccchHHHHHHHH
Q 044417 2 GYRFPLKQAATAG 14 (188)
Q Consensus 2 ~~~~Plt~~~t~~ 14 (188)
...|||.+++...
T Consensus 25 ~S~HPlA~AIv~~ 37 (113)
T d2b8ea2 25 RSEHPIAEAIVKK 37 (113)
T ss_dssp TCCSHHHHHHHHH
T ss_pred cCCCchHHHHHHH
Confidence 4689988876543
No 9
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=41 Score=20.19 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhHhHHHH
Q 044417 99 LMMKVLLNQIVLGPCVI 115 (188)
Q Consensus 99 ~~~Kvl~dq~i~~P~~~ 115 (188)
.++.+++||-+++-+-+
T Consensus 28 ~Ik~~LlDQ~~~aGIGN 44 (89)
T d1k3xa1 28 QFAGLLLDQAFLAGLGN 44 (89)
T ss_dssp CHHHHTTCTTTSBTCCH
T ss_pred hHHHHHhcCccccccCc
Confidence 47889999999988754
No 10
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=5.12 E-value=72 Score=19.19 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=6.7
Q ss_pred chHH-HHHHHHH
Q 044417 5 FPLK-QAATAGS 15 (188)
Q Consensus 5 ~Plt-~~~t~~~ 15 (188)
|||+ |++++|+
T Consensus 29 YPLsLNaL~~aC 40 (84)
T d3bz6a1 29 YPLTLNALVIAC 40 (84)
T ss_dssp CSEEHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 6764 6666653
Done!