BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044419
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SE7|A Chain A, Ancient Vana
 pdb|3SE7|B Chain B, Ancient Vana
 pdb|3SE7|C Chain C, Ancient Vana
 pdb|3SE7|D Chain D, Ancient Vana
 pdb|3SE7|E Chain E, Ancient Vana
 pdb|3SE7|F Chain F, Ancient Vana
          Length = 346

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 86  GPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIET 131
           GPEL    +    LSH  FK+  E   E  G D+  A+T+P +I T
Sbjct: 223 GPELITGEVDQITLSHGFFKIHQESTPES-GSDNS-AVTVPADIST 266


>pdb|2G0Q|A Chain A, Solution Structure Of At5g39720.1 From Arabidopsis
           Thaliana
          Length = 173

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 114 EFGFDHCGALTIPCEIETFKYLLKCIESHQKDHSDDIS 151
           E+ F+    L     IETFK +++C +  Q   +DDIS
Sbjct: 129 EWNFEEWKRLHKKKFIETFKKIMECKKKPQGQGNDDIS 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,767,771
Number of Sequences: 62578
Number of extensions: 178203
Number of successful extensions: 265
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 3
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)