BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044419
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var.
radiata GN=ARG7 PE=2 SV=1
Length = 92
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 75 DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
D PKGYLAVYVG ++RF+IP S+L+ LF+ LL +AEEEFG+DH G LTIPC + F+
Sbjct: 24 DAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQ 83
Query: 134 YLLKCIESH 142
++ C+ +
Sbjct: 84 HITSCLSAQ 92
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
Length = 82
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 75 DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
D PKGYLAVYVG +L+RF+IP SYL+ F+ LL +AEEEFG+DH G LTIPC + F+
Sbjct: 16 DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75
Query: 134 YLLKCI 139
+ C+
Sbjct: 76 CITSCL 81
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
Length = 82
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 75 DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
D PKGYLAVYVG +++RF+IP SY++ F+ LL +AEEEFG+DH G LTIPC E F+
Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQ 75
Query: 134 YLLKCI 139
+ C+
Sbjct: 76 RITCCL 81
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1
Length = 93
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 75 DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETF 132
DVPKGY AVYVG ++RRF IP SYL+ F+ LL +AEEEFG+DH G LTIPC+ E F
Sbjct: 25 DVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
Length = 92
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 75 DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
+VPKGYL VYVG ++RRF+IP SYL+ F+ LL +AEEEFG+DH G LTIPC+ + F
Sbjct: 24 EVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF- 82
Query: 134 YLLKCIESHQKD 145
+ SH D
Sbjct: 83 ---LTVTSHLND 91
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
Length = 90
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 75 DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
DV KGYLAVYVG ++RRF+IP SYL+ F+ LL +AEEEFG+ H G LTIPC + F+
Sbjct: 24 DVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQ 83
Query: 134 YL 135
++
Sbjct: 84 HI 85
>sp|Q83470|P2A_SCPMV Polyprotein P2A OS=Southern cowpea mosaic virus GN=ORF2A PE=4 SV=2
Length = 572
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 29 TLSSPKPSSSQSSPNHGGISPVINKRLANVPCDSDEESCYSPEP 72
TLS P+ SQ+S + GG+ ++ L PC S +ES + P+P
Sbjct: 465 TLSQPQQKFSQNSLSSGGLKG--DQELKLAPCYSKQESLFPPKP 506
>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2
PE=2 SV=2
Length = 705
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 9 LNGIRQIVKLKEILQKWQSVTLSSPK-PSSSQSSPNHGGISPVINKRLANVPCDSDEESC 67
L+G+++ V L+ I+ ++Q ++S P PS S+ + S + ++R+A C+ D
Sbjct: 90 LDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPSSAMSSERIACQFCEQD---- 145
Query: 68 YSPEPPHDVPKGYLAVYVG 86
PP D K + V
Sbjct: 146 ----PPRDAVKTCITCEVS 160
>sp|Q9UJV3|TRIM1_HUMAN Probable E3 ubiquitin-protein ligase MID2 OS=Homo sapiens GN=MID2
PE=1 SV=3
Length = 735
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 9 LNGIRQIVKLKEILQKWQSVTLSSPK-PSSSQSSPNHGGISPVINKRLANVPCDSDEESC 67
L+G+++ V L+ I+ ++Q ++S P PS S+ + + + ++R+A C+ D
Sbjct: 90 LDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPTTAMSSERIACQFCEQD---- 145
Query: 68 YSPEPPHDVPKGYLAVYVG 86
PP D K + V
Sbjct: 146 ----PPRDAVKTCITCEVS 160
>sp|Q5F450|PAN2_CHICK PAB-dependent poly(A)-specific ribonuclease subunit 2 OS=Gallus
gallus GN=PAN2 PE=2 SV=1
Length = 1197
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 4 NGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGISP 49
GGS+ + R++ LK + +K + + P+P S QSSP HG + P
Sbjct: 1150 QGGSEPDDFRKV--LKALYEKGRKLDWKVPEPDS-QSSPKHGAVFP 1192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,686,235
Number of Sequences: 539616
Number of extensions: 2818299
Number of successful extensions: 5425
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5383
Number of HSP's gapped (non-prelim): 44
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)