Query 044419
Match_columns 160
No_of_seqs 173 out of 659
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 57.9 21 0.00073 25.0 5.4 62 79-143 6-72 (107)
2 2vkp_A BTB/POZ domain-containi 57.6 21 0.0007 23.9 5.1 59 81-143 11-74 (109)
3 1sy9_B Cyclic-nucleotide-gated 55.0 7.8 0.00027 21.7 2.0 18 9-26 4-21 (26)
4 1vd2_A Protein kinase C, IOTA 49.8 21 0.00071 25.2 4.1 37 84-124 12-48 (89)
5 2al3_A TUG long isoform; TUG U 45.9 18 0.00063 25.7 3.4 40 78-119 8-47 (90)
6 2vpk_A Myoneurin; transcriptio 44.7 27 0.00092 23.7 4.0 54 82-144 26-84 (116)
7 3ga1_A Nucleus accumbens-assoc 42.5 44 0.0015 23.2 5.0 53 81-142 36-92 (129)
8 1und_A Advillin, P92; actin bi 40.2 6.1 0.00021 23.9 0.0 19 97-115 1-19 (37)
9 2if5_A Zinc finger and BTB dom 36.2 60 0.002 22.0 4.8 57 82-143 29-88 (120)
10 2xko_C PIPX, global nitrogen r 35.8 4.9 0.00017 28.9 -1.0 11 97-107 5-15 (89)
11 1r29_A B-cell lymphoma 6 prote 34.8 36 0.0012 23.5 3.4 56 82-143 33-92 (127)
12 1w8x_N Protein P31, protein C, 34.7 11 0.00037 28.2 0.7 29 76-105 85-123 (126)
13 1y6i_A Mg-chelatase cofactor G 26.7 6.5 0.00022 32.5 -1.9 30 74-105 200-229 (233)
14 3ohu_A Transcription regulator 25.0 44 0.0015 22.9 2.5 54 82-142 36-93 (125)
15 3n5b_B ASR0485 protein; PII, P 24.6 10 0.00035 28.3 -1.0 12 97-108 28-39 (112)
16 2q81_A MIZ-1 protein; BTB/POZ 24.2 1.2E+02 0.0041 20.6 4.6 52 82-143 31-85 (119)
17 2ppi_A Gigaxonin; BTB domain, 23.5 1.7E+02 0.0059 20.7 5.6 58 82-144 51-113 (144)
18 4ajy_C Transcription elongatio 23.1 1.1E+02 0.0038 20.6 4.2 58 84-142 6-65 (97)
19 3htm_A Speckle-type POZ protei 22.9 1.4E+02 0.0049 21.0 5.0 59 81-144 37-98 (172)
20 1buo_A POZ domain, protein (pr 21.3 1.1E+02 0.0037 20.8 3.9 53 82-144 32-87 (121)
21 1yu8_X Villin; alpha helix, 3- 21.2 20 0.00069 24.2 0.0 20 97-116 31-50 (67)
22 3b84_A Zinc finger and BTB dom 20.2 1.1E+02 0.0039 20.7 3.8 54 82-144 28-84 (119)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=57.90 E-value=21 Score=24.96 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=44.7
Q ss_pred ceEEEEecCCceeEEEeccccc-cH--HHHHHHHHHHHhcC--CCCCCceeecCCHHHHHHHHHHHhhCC
Q 044419 79 GYLAVYVGPELRRFIIPTSYLS-HS--LFKVLLEKAEEEFG--FDHCGALTIPCEIETFKYLLKCIESHQ 143 (160)
Q Consensus 79 G~~aVYVG~e~rRFvVp~~yLn-hP--~F~~LL~~aeEEfG--f~~~G~L~IPCd~~~Fe~vl~~l~~~~ 143 (160)
..+.+.|| +++|.+..+-|. +| .|..|+... .++. ...+|.+-|-.+...|++||..++...
T Consensus 6 ~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 56778887 789999886664 34 566654321 1222 335789999999999999999999754
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=57.55 E-value=21 Score=23.85 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=41.4
Q ss_pred EEEEecC--CceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHHhhCC
Q 044419 81 LAVYVGP--ELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIP-CEIETFKYLLKCIESHQ 143 (160)
Q Consensus 81 ~aVYVG~--e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~~ 143 (160)
+.+.||. +.++|-+.-..| .-|.|+.++...-.|- . ..|.|| .+...|+.+|..+=.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 3455643 358888888887 6899999997653331 2 678998 79999999999987644
No 3
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=55.03 E-value=7.8 Score=21.70 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=15.8
Q ss_pred ccchhhHHHHHHHHHHHH
Q 044419 9 LNGIRQIVKLKEILQKWQ 26 (160)
Q Consensus 9 ~~kI~~ivrLkq~lkKWq 26 (160)
..+.|.|+||.-+++.|-
T Consensus 4 rggfrri~rlvgv~r~wa 21 (26)
T 1sy9_B 4 RGGFRRIARLVGVLREWA 21 (26)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 347899999999999996
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=49.81 E-value=21 Score=25.16 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.2
Q ss_pred EecCCceeEEEeccccccHHHHHHHHHHHHhcCCCCCCcee
Q 044419 84 YVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALT 124 (160)
Q Consensus 84 YVG~e~rRFvVp~~yLnhP~F~~LL~~aeEEfGf~~~G~L~ 124 (160)
|-+.+-+||.||. ..-|.+|.++-.+-|++..+.+++
T Consensus 12 ~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~ 48 (89)
T 1vd2_A 12 YYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFT 48 (89)
T ss_dssp ESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEE
T ss_pred EeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEE
Confidence 4456788999988 458999999999999986444443
No 5
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=45.94 E-value=18 Score=25.70 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred CceEEEEecCCceeEEEeccccccHHHHHHHHHHHHhcCCCC
Q 044419 78 KGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH 119 (160)
Q Consensus 78 kG~~aVYVG~e~rRFvVp~~yLnhP~F~~LL~~aeEEfGf~~ 119 (160)
.|--++++....+|+.|++.- .-.+.++|++|-+.|||..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp--~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTP--STVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp --CCEEEECTTSCEEEECCCT--TSBHHHHHHHHHHHTTCCG
T ss_pred CccEEEEEcCCCcEEEEEECC--CCCHHHHHHHHHHHhCCCh
Confidence 355566666899999999943 3356788999999999975
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=44.70 E-value=27 Score=23.72 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.3
Q ss_pred EEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeec---CCHHHHHHHHHHHhhCCC
Q 044419 82 AVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIP---CEIETFKYLLKCIESHQK 144 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP---Cd~~~Fe~vl~~l~~~~~ 144 (160)
.+.|| .++|-+.-..| .-|.|+.++... ....+.|+ .+...|+.+|..+=.+.-
T Consensus 26 ~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 26 TIVIG--EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEC--CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence 34554 46788877777 579999988653 35678887 799999999999977543
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=42.48 E-value=44 Score=23.19 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=40.2
Q ss_pred EEEEecCCceeEEEeccccc--cHHHHHHHHHHHHhcCCCCCCceeec--CCHHHHHHHHHHHhhC
Q 044419 81 LAVYVGPELRRFIIPTSYLS--HSLFKVLLEKAEEEFGFDHCGALTIP--CEIETFKYLLKCIESH 142 (160)
Q Consensus 81 ~aVYVG~e~rRFvVp~~yLn--hP~F~~LL~~aeEEfGf~~~G~L~IP--Cd~~~Fe~vl~~l~~~ 142 (160)
+.+.|| .++|-+.-..|. -|.|+.++... ....|.|| .+...|+.+|..+=.+
T Consensus 36 v~l~v~--~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 36 VSVVVK--GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred eEEEEC--CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 345554 567777766665 69999998765 45689997 8999999999998654
No 8
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=40.19 E-value=6.1 Score=23.89 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.9
Q ss_pred cccccHHHHHHHHHHHHhc
Q 044419 97 SYLSHSLFKVLLEKAEEEF 115 (160)
Q Consensus 97 ~yLnhP~F~~LL~~aeEEf 115 (160)
.||+.-.|+.++.|+.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999986
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=36.19 E-value=60 Score=21.98 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=39.6
Q ss_pred EEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHHhhCC
Q 044419 82 AVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIP-CEIETFKYLLKCIESHQ 143 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~~ 143 (160)
.+.|| .++|-+.-..| ..|.|+.++...-.| .....|.|| .+...|+.+|..+=.+.
T Consensus 29 ~l~v~--~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 29 VILVE--GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred EEEEC--CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 34454 57788877777 479999998754322 234678898 68999999999987643
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=35.83 E-value=4.9 Score=28.89 Aligned_cols=11 Identities=45% Similarity=0.920 Sum_probs=9.0
Q ss_pred cccccHHHHHH
Q 044419 97 SYLSHSLFKVL 107 (160)
Q Consensus 97 ~yLnhP~F~~L 107 (160)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998655
No 11
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=34.84 E-value=36 Score=23.46 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=41.6
Q ss_pred EEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceee-c-CCHHHHHHHHHHHhhCC
Q 044419 82 AVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTI-P-CEIETFKYLLKCIESHQ 143 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~I-P-Cd~~~Fe~vl~~l~~~~ 143 (160)
.+.|| .++|-+.-..| .-|.|+.++...-.| ....|.| + .+...|+.+|..+=.+.
T Consensus 33 ~l~v~--~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 33 VIVVS--REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEEC--CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 34454 46788777777 689999999754333 4568999 4 78999999999987654
No 12
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=34.73 E-value=11 Score=28.21 Aligned_cols=29 Identities=24% Similarity=0.647 Sum_probs=19.1
Q ss_pred CCCceEEEEecCCceeEE----------EeccccccHHHH
Q 044419 76 VPKGYLAVYVGPELRRFI----------IPTSYLSHSLFK 105 (160)
Q Consensus 76 vpkG~~aVYVG~e~rRFv----------Vp~~yLnhP~F~ 105 (160)
-..|||+|.| ..+-.|+ +|+-|||.|+-+
T Consensus 85 G~QGYfPlL~-~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLV-PGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEE-CCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeec-cchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 3579999999 6666666 688899988754
No 13
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=26.70 E-value=6.5 Score=32.51 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=19.9
Q ss_pred CCCCCceEEEEecCCceeEEEeccccccHHHH
Q 044419 74 HDVPKGYLAVYVGPELRRFIIPTSYLSHSLFK 105 (160)
Q Consensus 74 ~~vpkG~~aVYVG~e~rRFvVp~~yLnhP~F~ 105 (160)
..+|+||+|+.-.--+-| |=-.+|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 357999999865222222 445789999884
No 14
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=25.03 E-value=44 Score=22.92 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=38.6
Q ss_pred EEEecCCceeEEEeccccc--cHHHHHHHHHHHHhcCCCCCCceeec--CCHHHHHHHHHHHhhC
Q 044419 82 AVYVGPELRRFIIPTSYLS--HSLFKVLLEKAEEEFGFDHCGALTIP--CEIETFKYLLKCIESH 142 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yLn--hP~F~~LL~~aeEEfGf~~~G~L~IP--Cd~~~Fe~vl~~l~~~ 142 (160)
.+.|| .++|-+.-..|. .|.|+.++... +.....|.|| .+...|+.+|..+=.+
T Consensus 36 ~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~-----~~e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 36 TLIVE--RKEFRAHRAVLAACSEYFWQALVGQ-----TKNDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEET--TEEEEECHHHHHHHBHHHHHHHTTC-----CCSSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEEC--CEEEechHHHHHHcCHHHHHHhcCC-----CCCCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 44454 567777766664 58999998643 2335678887 7999999999988653
No 15
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=24.64 E-value=10 Score=28.25 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.5
Q ss_pred cccccHHHHHHH
Q 044419 97 SYLSHSLFKVLL 108 (160)
Q Consensus 97 ~yLnhP~F~~LL 108 (160)
.|||||.|.-|.
T Consensus 28 ~YLNHPTFGLLy 39 (112)
T 3n5b_B 28 TYINHPTWGLLY 39 (112)
T ss_dssp CEEEETTTEEEE
T ss_pred hhccCCccchhe
Confidence 499999997553
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=24.17 E-value=1.2e+02 Score=20.57 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=38.8
Q ss_pred EEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeecC-CHHHHHHHHHHHhhCC
Q 044419 82 AVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIPC-EIETFKYLLKCIESHQ 143 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IPC-d~~~Fe~vl~~l~~~~ 143 (160)
.+.|| .++|-+.-..| ..|.|+.++.. +...|.|+- +...|+.+|..+=.+.
T Consensus 31 ~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~ 85 (119)
T 2q81_A 31 TFVVD--GVHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAK 85 (119)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred EEEEC--CEEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCC
Confidence 34454 47788877777 47999999975 245688885 7899999999987654
No 17
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=23.54 E-value=1.7e+02 Score=20.68 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=40.5
Q ss_pred EEEecCCceeEEEeccccc--cHHHHHHHHHH--HHhcCCCCCCceeec-CCHHHHHHHHHHHhhCCC
Q 044419 82 AVYVGPELRRFIIPTSYLS--HSLFKVLLEKA--EEEFGFDHCGALTIP-CEIETFKYLLKCIESHQK 144 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yLn--hP~F~~LL~~a--eEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~~~ 144 (160)
.+.|| .++|-+.-..|. -|.|+.++... +.| .....|.|| .+...|+.+|..+=.+.-
T Consensus 51 ~l~v~--~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e---~~~~~I~l~~v~~~~f~~lL~fiYtg~~ 113 (144)
T 2ppi_A 51 HLVLD--GEEIPVQKNILAAASPYIRTKLNYNPPKDD---GSTYKIELEGISVMVMREILDYIFSGQI 113 (144)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHHHCC--------CCCEEECCSSCHHHHHHHHHHHTTSCC
T ss_pred EEEEC--CEEEehHHHHHHHcCHHHHHHHcCCCcccc---CCCcEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 34454 578888777774 79999999752 111 235678998 589999999999976443
No 18
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=23.13 E-value=1.1e+02 Score=20.61 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=39.6
Q ss_pred EecCCceeEEEecccc-ccHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHHhhC
Q 044419 84 YVGPELRRFIIPTSYL-SHSLFKVLLEKAEEEFGFDHCGALTIP-CEIETFKYLLKCIESH 142 (160)
Q Consensus 84 YVG~e~rRFvVp~~yL-nhP~F~~LL~~aeEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~ 142 (160)
.+-.+++.|.|+-... ..+.|+.+|+... .+.-..+++|.|| -+...++.|+.-+..|
T Consensus 6 L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~-~~~E~~~~~I~l~~V~~~iL~kViey~~~h 65 (97)
T 4ajy_C 6 LISSDGHEFIVKREHALTSGTIKAMLSGPG-QFAENETNEVNFREIPSHVLSKVCMYFTYK 65 (97)
T ss_dssp EECTTCCEEEEEHHHHTTSHHHHHHHCCC---------CEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEecCCcEEEecHHHHHHhHHHHHHHHhCC-CccccCCCceECCCCCHHHHHHHHHHHHHh
Confidence 3457889999997664 4688998886410 0001236789998 8899999999999854
No 19
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=22.94 E-value=1.4e+02 Score=21.05 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=42.1
Q ss_pred EEEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHHhhCCC
Q 044419 81 LAVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIP-CEIETFKYLLKCIESHQK 144 (160)
Q Consensus 81 ~aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~~~ 144 (160)
+.+.|| .++|-+.-..| .-|.|+.++...-.| .....|.|| .+...|+.+|..+=.+.-
T Consensus 37 v~l~v~--~~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 37 CCLCVA--GQEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred eEEEEC--CEEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 455564 56788887777 469999999742111 234678888 789999999999876543
No 20
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=21.32 E-value=1.1e+02 Score=20.83 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=38.6
Q ss_pred EEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHHhhCCC
Q 044419 82 AVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIP-CEIETFKYLLKCIESHQK 144 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~~~ 144 (160)
.+.|| .++|-+.-..| ..|.|+.++.. ....|.|+ .+...|+.+|..+=.+.-
T Consensus 32 ~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~ 87 (121)
T 1buo_A 32 VIMVD--SQEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYAYTATL 87 (121)
T ss_dssp EEEES--SCEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred EEEEC--CEEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhhcCCCc
Confidence 34454 46777776666 67999998853 24578888 899999999999876543
No 21
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=21.23 E-value=20 Score=24.17 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.4
Q ss_pred cccccHHHHHHHHHHHHhcC
Q 044419 97 SYLSHSLFKVLLEKAEEEFG 116 (160)
Q Consensus 97 ~yLnhP~F~~LL~~aeEEfG 116 (160)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999973
No 22
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=20.20 E-value=1.1e+02 Score=20.72 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=39.2
Q ss_pred EEEecCCceeEEEecccc--ccHHHHHHHHHHHHhcCCCCCCceeec-CCHHHHHHHHHHHhhCCC
Q 044419 82 AVYVGPELRRFIIPTSYL--SHSLFKVLLEKAEEEFGFDHCGALTIP-CEIETFKYLLKCIESHQK 144 (160)
Q Consensus 82 aVYVG~e~rRFvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-Cd~~~Fe~vl~~l~~~~~ 144 (160)
.+.|| .++|-+.-..| ..|.|+.++... . .+.|.|| .+...|+.+|..+=.+.-
T Consensus 28 ~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~~ 84 (119)
T 3b84_A 28 TLDVG--GLVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGHL 84 (119)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred EEEEC--CEEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence 34454 46777777776 479999888642 2 5689998 678999999999876543
Done!