BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044420
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 11 VPLQKAALKGNW-PTAKHLLGNEDPRSI-----------LCAGIAKGYETLLHLAAGARQ 58
PL AA++G T + + NED + L A + K ET LHLAA +
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 59 TGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118
+ LL D QD G T AVAA ++ + +I+L+ L R + TP
Sbjct: 64 ADAAKRLLD--AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 119 LYMAAVLAQRDMALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGL 175
L +AA LA M L D A DN + AL + + A+ +L H
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADN---SGKTALHWAAAVNNTE--AVNILLMHHAN 176
Query: 176 AVARDGNYETALHVLARKPSAFASR 200
A+D ET L + AR+ S AS+
Sbjct: 177 RDAQDDKDETPLFLAAREGSYEASK 201
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 53/133 (39%), Gaps = 25/133 (18%)
Query: 2 NRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGF 61
+ NV L +C L ALK +LL NE P LH AA T
Sbjct: 41 DNNVRL-VCTLLNAGALK-------NLLENEFP---------------LHQAATLEDTKI 77
Query: 62 VEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121
V+ LL +D D+ GNTA +AV +G+ K+ +KKN RL T Y
Sbjct: 78 VKILL-FSGLDDSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYH 135
Query: 122 AAVLAQRDMALYL 134
A L + Y
Sbjct: 136 AVXLNDVSIVSYF 148
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
ET LHLAA ++ + LL+ D +QD G T AV+A + + +I+L+
Sbjct: 23 ETALHLAARYSRSDAAKRLLE--ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 107 LLTMRGGENMTPLYMAAVLA 126
L R + TPL +AA LA
Sbjct: 81 DLDARMHDGTTPLILAARLA 100
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 30 GNEDPRSILCA--GIAKGYE----TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83
G +D IL A A Y+ T LH+AA VE LL+ D+ D NG T
Sbjct: 13 GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTT 70
Query: 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123
A + G + I +++LK + + +TPLY+AA
Sbjct: 71 PLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAA 109
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
ET LHLAA ++ + LL+ D +QD G T AV+A + + +I+++
Sbjct: 26 ETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 107 LLTMRGGENMTPLYMAAVLAQRDM 130
L R + TPL +AA LA M
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGM 107
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGY----------ETLLHLAAGARQTG 60
PL A+ G + ED +++ I +G ET LHLAA ++
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71
Query: 61 FVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120
+ LL+ D +QD G T AV+A + + +I+++ L R + TPL
Sbjct: 72 AAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 121 MAAVLAQRDM 130
+AA LA M
Sbjct: 130 LAARLAVEGM 139
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 34 PRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGS 93
P S + A + YET AA + + L +L++ D+ D NG TA F GS
Sbjct: 33 PSSYIAADVVSEYETPWWTAA---RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGS 89
Query: 94 IHIAKIMLKKNERL--LTMRGGENMTPLYMAA 123
+++ + L MRGG +T L+MAA
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGG--LTALHMAA 119
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
ET LHLAA ++ + LL+ D +QD G T AV+A + + +I+++
Sbjct: 59 ETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 107 LLTMRGGENMTPLYMAAVLAQRDM 130
L R + TPL +AA LA M
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGM 140
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 34 PRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGS 93
P S + A + YET AA + + L +L++ D+ D NG TA F GS
Sbjct: 32 PSSYIAADVVSEYETPWWTAA---RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGS 88
Query: 94 IHIAKIMLKKNERL--LTMRGGENMTPLYMAA 123
+++ + L MRGG +T L+MAA
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGG--LTALHMAA 118
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AAL G+ + LL N + + A G+ T LHLAA A VE LLK
Sbjct: 83 PLHLAALYGHLEIVEVLLKN---GADVNATDTYGF-TPLHLAADAGHLEIVEVLLKY--G 136
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
+T LHLAA VE LLK D+ D+ G+T A G + I +++L KN
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLK--HGADVNAADKMGDTPLHLAALYGHLEIVEVLL-KNGA 104
Query: 107 LLTMRGGENMTPLYMAA 123
+ TPL++AA
Sbjct: 105 DVNATDTYGFTPLHLAA 121
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LHLAA ++ + LL+ D +QD G T AV+A + + +I+++
Sbjct: 59 TALHLAAAYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 108 LTMRGGENMTPLYMAAVLAQRDM 130
L R + TPL +AA LA M
Sbjct: 117 LDARMHDGTTPLILAARLAVEGM 139
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 23/202 (11%)
Query: 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELL 66
+ + PL AA G+ AK+LL N+ AK +T LH AA T V+ LL
Sbjct: 45 VKVETPLHMAARAGHTEVAKYLLQNK----AKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Query: 67 KLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--NERLLTMRGGENMTPLYMAAV 124
+ + L G+T A G + +L+K ++ +T +G TPL++AA
Sbjct: 101 E--NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG---FTPLHVAAK 155
Query: 125 LAQRDMALYL-----YDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179
+ +A L + +A K+ LTP + + D+ +KLL G +
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTP------LHVAVHHNNLDI-VKLLLPRGGSPHSP 208
Query: 180 DGNYETALHVLARKPSAFASRN 201
N T LH+ A++ +R+
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARS 230
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 28/130 (21%)
Query: 117 TPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLL-- 169
TPL+MAA ++A YL +AKAKD+ TP C + H +KLL
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-------LHCAARIGHTNMVKLLLE 101
Query: 170 ----------EDHSGLAV-ARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVK- 217
H+ L + AR+G+ ET L +L ++ S +G +H A + K
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP--LHVAAKYGKV 159
Query: 218 SLWEAILKRD 227
+ E +L+RD
Sbjct: 160 RVAELLLERD 169
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
PL AA +G+ + LL N + + A + G+ T LHLAA VE LLK
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKN---GADVNASDSHGF-TPLHLAAKRGHLEIVEVLLK-- 134
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
PL AA +G+ + LL N + + A G+ T LHLAA VE LLK
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKN---GADVNANDHNGF-TPLHLAANIGHLEIVEVLLK-- 134
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.4 bits (80), Expect = 0.076, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE 72
L +AA G+ T K L +S+ C I T LH AAG + VE LL+
Sbjct: 14 LLEAAKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGA 68
Query: 73 DLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMAL 132
D+ +D+ G A + G +A++++K ++ + TPL+ AA + ++
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICK 127
Query: 133 YLYDDA-----KAKDNLTPED 148
L K +D TP D
Sbjct: 128 LLLQHGADPTKKNRDGNTPLD 148
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE 72
L +AA G+ T K L +S+ C I T LH AAG + VE LL+
Sbjct: 12 LLEAAKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGA 66
Query: 73 DLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMAL 132
D+ +D+ G A + G +A++++K ++ + TPL+ AA + ++
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 133 YLYDDA-----KAKDNLTPED 148
L K +D TP D
Sbjct: 126 LLLQHGADPTKKNRDGNTPLD 146
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE 72
L +AA G+ T K L +S+ C I T LH AAG + VE LL+
Sbjct: 16 LLEAAKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGA 70
Query: 73 DLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMAL 132
D+ +D+ G A + G +A++++K ++ + TPL+ AA + ++
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 133 YLYDDA-----KAKDNLTPED 148
L K +D TP D
Sbjct: 130 LLLQHGADPTKKNRDGNTPLD 150
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.0 bits (79), Expect = 0.098, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LHLAA Q VE LLK D+ D G T A G + I +++LK +
Sbjct: 41 TPLHLAAANGQLEIVEVLLK--NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 108 LTM-RGGENMTPLYMAAVLAQRDMALYLYD---DAKAKDNL 144
R G TPL++AA+ Q ++ L D A+D L
Sbjct: 99 NAYDRAG--WTPLHLAALSGQLEIVEVLLKHGADVNAQDAL 137
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301
L +AAE GN + + +LI + D V+ D + R+ H A H I L+ +K
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLL----ISKGAD 62
Query: 302 ATFKDHDQNNMLHLAAKSPHPSRVSIV 328
KD D LH AAK H V ++
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLL 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 28/128 (21%)
Query: 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301
L +AAE GN + + +L+ + D V+ D + ++ H+A + H + L+ G
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA- 65
Query: 302 ATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIV--QPTFREMKNS 359
KD D LHLAA++ H KEV K++ Q K+S
Sbjct: 66 ---KDSDGKTPLHLAAENGH---------------------KEVVKLLLSQGADPNAKDS 101
Query: 360 EGKTPREL 367
+GKTP L
Sbjct: 102 DGKTPLHL 109
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
+ P HL AAE G+ E + L+ D + D + ++ H+A + H + L+ G
Sbjct: 38 KTPLHL---AAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328
KD D LHLAA++ H V ++
Sbjct: 94 ADPNA----KDSDGKTPLHLAAENGHKEVVKLL 122
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 43 AKGYE--TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIM 100
AK YE T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+
Sbjct: 108 AKDYEGFTPLHLAAYDGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 101 LKKN 104
K N
Sbjct: 166 QKLN 169
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
R P HL AA G+ E + L+ + D V+ D N R+ H+A + H + L+ E G
Sbjct: 3 RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328
KD + LHLAA++ H V ++
Sbjct: 59 AD----VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKP-EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
T LHLAA + G +E + L++ D+ +D+NG T A G + + K++L+
Sbjct: 4 TPLHLAA---RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 107 LLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTP 146
+ + TPL++AA ++ L + +AK K+ TP
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 162 HDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWE 221
H +KLL + A+D N T LH+ AR + L++VK L E
Sbjct: 14 HLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-----------------NGHLEVVKLLLE 56
Query: 222 AILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281
A + + R P HL AA G+ E + L+ + D V+ D N R+ H+A
Sbjct: 57 AGADVNAKDKNG--RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAAR 110
Query: 282 HRHANIFNLIYEIG 295
+ H + L+ E G
Sbjct: 111 NGHLEVVKLLLEAG 124
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
R P HL AA G+ E + L+ + D V+ D N R+ H+A + H + L+ E G
Sbjct: 3 RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328
KD + LHLAA++ H V ++
Sbjct: 59 AD----VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LHLAA V+ LL+ D+ +D+NG T A G + + K++L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 108 LTMRGGENMTPLYMAA 123
+ + TPL++AA
Sbjct: 61 VNAKDKNGRTPLHLAA 76
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 191 ARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGN 250
R P A+RN L++VK L EA + + R P HL AA G+
Sbjct: 2 GRTPLHLAARN---------GHLEVVKLLLEAGADVNAKDKNG--RTPLHL---AARNGH 47
Query: 251 FEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
E + L+ + D V+ D N R+ H+A + H + L+ E G
Sbjct: 48 LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL+ AAL G+ + LL N + + A +G+ T LHLAA VE LLK
Sbjct: 83 PLRLAALFGHLEIVEVLLKN---GADVNANDMEGH-TPLHLAAMFGHLEIVEVLLK--NG 136
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 11 VPLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
PL AA+ G+ + LL N D + G T LHLAA A VE LLK
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTG-----RTPLHLAAWADHLEIVEVLLK-- 101
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ QD+ G TAF ++ G+ +A+I+ K
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK 103
+GY T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+ K
Sbjct: 112 QGY-TPLHLAAEDGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Query: 104 N 104
N
Sbjct: 169 N 169
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA+ + + LL N D +I G ET LHL A VE LLK
Sbjct: 50 PLHLAAMNDHLEIVEVLLKNGADVNAIDAIG-----ETPLHLVAMYGHLEIVEVLLK--H 102
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 24/123 (19%)
Query: 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301
L +AAE GN + + +L+ + D + D + R+ H A + H I L+ +K
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLL----LSKGAD 62
Query: 302 ATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEG 361
KD D LH AA++ H V ++ + K P K+S+G
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLL----------------LSKGADPN---AKDSDG 103
Query: 362 KTP 364
+TP
Sbjct: 104 RTP 106
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
R P H AAE G+ E + L+ D + D + R+ H A + H I L+
Sbjct: 38 RTPLHY---AAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLL---- 89
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328
+K KD D LH AA++ H V ++
Sbjct: 90 LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101
+AK E+ L LA+ T V LL+ + D+ + D NG T +AV + + +L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLE--RDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 102 KKNERLLTMRGGENMTPLYMAAVLAQR 128
+ LT TP+ +A L R
Sbjct: 123 ARGAD-LTTEADSGYTPMDLAVALGYR 148
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 10 CVPLQKAALKGNWPTAKHLLG-NEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKL 68
PL AAL G+ + LL D ++ G +T LHLAA VE LLK
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWG-----DTPLHLAAIMGHLEIVEVLLK- 134
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 115 TPLHLAADRGHLEIVEVLLK--HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101
+AK E+ L LA+ T V LL+ + D+ + D NG T +AV + + +L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLE--RDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 102 KKNERLLTMRGGENMTPLYMAAVLAQR 128
+ LT TP+ +A L R
Sbjct: 123 ARGAD-LTTEADSGYTPMDLAVALGYR 148
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 10 CVPLQKAALKGNWPTAKHLLG-NEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKL 68
PL AAL G+ + LL D ++ G +T LHLAA VE LLK
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWG-----DTPLHLAAIMGHLEIVEVLLK- 134
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LHLAA VE LLK D+ D G+T A G + I +++LK +
Sbjct: 49 TPLHLAATYGHLEIVEVLLK--HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 108 LTMRGGENMTPLYMAAVLAQRDMALYLYD---DAKAKD 142
+ + TPL++AA++ ++ L D A+D
Sbjct: 107 NAVDTWGD-TPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 115 TPLHLAANRGHLEIVEVLLKY--GADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LHLAA VE LLK D+ D G+T A G + I +++L KN
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK--NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL-KNGAD 105
Query: 108 LTMRGGENMTPLYMAA 123
+ + +TPL++AA
Sbjct: 106 VNAKDDNGITPLHLAA 121
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA G+ + LL N D ++ G+ T LHLAA VE LLK
Sbjct: 83 PLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM-----TPLHLAAKWGYLEIVEVLLK--H 135
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTG-FVEELL 66
N +P AA KG+ K LL ED R + GY L+ A G R+ ++++
Sbjct: 108 NALIP---AAEKGHIDNVKLLL--EDGREDIDFQNDFGYTALIE-AVGLREGNQLYQDIV 161
Query: 67 KLM--KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
KL+ D +++D +G TA +A G I+KI+ + N
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 30 GNEDPRSILCAGIAK-------GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGN 82
G +D IL A A GY T LHLAA VE LLK D+ QD+ G
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGK 69
Query: 83 TAFCFAVAAGSIHIAKIMLK 102
TAF ++ G+ +A+I+ K
Sbjct: 70 TAFDISIDNGNEDLAEILQK 89
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA VE LL+ D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 82 TPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AA +G+ + LL + + A GY T LHLAA VE LLK
Sbjct: 71 PLHLAAREGHLEIVEVLL---KAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AG 124
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ QD+ G T F A+ G+ IA+++ K
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297
P HL AA G+ E + L+ + D V+ D + + H+A H I ++ + G
Sbjct: 38 PLHL---AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 298 KELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAA 332
KD D LHLAA+ H V ++ A
Sbjct: 94 ----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA G + LL N DP+ + KG E+ L LA T V+ LL
Sbjct: 55 PLMWAAAHGQIAVVEFLLQNGADPQLL-----GKGRESALSLACSKGYTDIVKMLLDC-- 107
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ D NG T +AV + K++L+
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 141
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AA +G+ + LL + + A GY T LHLAA VE LLK
Sbjct: 71 PLHLAAREGHLEIVEVLL---KAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AG 124
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ QD+ G T F A+ G IA+++ K
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA G + LL N DP+ + KG E+ L LA T V+ LL
Sbjct: 39 PLMWAAAHGQIAVVEFLLQNGADPQLL-----GKGRESALSLACSKGYTDIVKMLLDC-- 91
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ D NG T +AV + K++L+
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA G + LL N DP+ + KG E+ L LA T V+ LL
Sbjct: 37 PLMWAAAHGQIAVVEFLLQNGADPQLL-----GKGRESALSLACSKGYTDIVKMLLDC-- 89
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ D NG T +AV + K++L+
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AA +G+ + LL + + A GY T LHLAA VE LLK
Sbjct: 83 PLHLAAREGHLEIVEVLL---KAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AG 136
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIM 100
D+ QD+ G TAF ++ G+ +A+I+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297
P HL AA G+ E + L+ + D V+ D + + H+A H I ++ + G
Sbjct: 50 PLHL---AAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 298 KELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAA 332
KD D LHLAA+ H V ++ A
Sbjct: 106 ----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301
L +AAE GN + + +LI + D V+ D + R+ H A + H + L+ +K
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLL----ISKGAD 62
Query: 302 ATFKDHDQNNMLHLAAKSPHPSRVSIV 328
KD D LH AA++ H V ++
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIM 100
T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+
Sbjct: 115 TPLHLAADTGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
+T LHLAA VE LLK D+ D +G+T A G + I +++LK
Sbjct: 48 DTPLHLAARVGHLEIVEVLLK--NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 107 LLTMRGGENMTPLYMAA 123
+ TPL++AA
Sbjct: 106 -VNADDTIGSTPLHLAA 121
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA G+ + LL N D ++ +G T LHLAA VE LLK
Sbjct: 50 PLHLAARVGHLEIVEVLLKNGADVNALDFSG-----STPLHLAAKRGHLEIVEVLLKY-- 102
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ D G+T A G + I +++LK
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 82 TPLHLAAIRGHLEIVEVLLK--HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA VE LL+ D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 82 TPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA G+ + LL N D + GI T LHLAA VE LLK
Sbjct: 50 PLHLAASNGHLEIVEVLLKNGADVNASDLTGI-----TPLHLAAATGHLEIVEVLLK--H 102
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ D +G+T A G + I +++LK
Sbjct: 103 GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIM 100
T LHLAA VE LLK D+ QD+ G TAF ++ G+ +A+I+
Sbjct: 115 TPLHLAAKYGHLEIVEVLLK--HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA VE LL+ D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 82 TPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 19 KGNWPTAKHLLGNEDPRSILCAGIAKGYE---------TLLHLAAGARQTGFVEELLKLM 69
KGN P HL + D I+ + G + T LHLAA VE LLK
Sbjct: 46 KGNTPL--HLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK-- 101
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 56 ARQTGFVEELLKLM-KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGE 114
A + G +E+ LM D+ DR GNT A + I +++LK + +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDND 79
Query: 115 NMTPLYMAAVLAQ 127
TPL++AA+
Sbjct: 80 GSTPLHLAALFGH 92
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 12 PLQKAALKGNWPTAKHLLG-NEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL AA+ G+ + LL D + G T LHLAA VE LLK
Sbjct: 83 PLHLAAMTGHLEIVEVLLKYGADVNAFDMTG-----STPLHLAADEGHLEIVEVLLKY-- 135
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAK 98
D+ QD+ G TAF ++ G+ +AK
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AA+ G+ + LL + + + A G+ T LHLAA VE LLK
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHG---ADVDAADVYGF-TPLHLAAMTGHLEIVEVLLKY--G 103
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
D+ D G+T A G + I +++LK
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK 103
+G T LH A + VE LL+ D L+ +NG T F A AGS+ + K+ L K
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 104 N 104
Sbjct: 115 G 115
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LHLAA E LLK D+ QD+ G TAF ++ G+ +A+I+ K N
Sbjct: 82 TPLHLAAFIGHLEIAEVLLK--HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 40 AGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKI 99
A ++ +T L LA + V+ LL D+ +QD +G+TA A G IA +
Sbjct: 177 AKASQAGQTALMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 100 MLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLY 135
+L +++ + T L +A Q ++A LY
Sbjct: 235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY 270
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 282 HRHANIFNLIYEI-GFTKELMATFKDHDQNNMLHLAAKS-----PHPSRVSIVSGAALQM 335
RH + N I EI F +E +++ +N+ AK P+ V I++ + M
Sbjct: 252 RRHKS--NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAM 309
Query: 336 HRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSL 375
+ W + +PT+R +KN + R+ IE +L
Sbjct: 310 EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTL 349
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 282 HRHANIFNLIYEI-GFTKELMATFKDHDQNNMLHLAAKS-----PHPSRVSIVSGAALQM 335
RH + N I EI F +E +++ +N+ AK P+ V I++ + M
Sbjct: 251 RRHKS--NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAM 308
Query: 336 HRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSL 375
+ W + +PT+R +KN + R+ IE +L
Sbjct: 309 EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTL 348
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 137 DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLED----------HSGLAVARDGNYETA 186
D KA+ LT D+N + +T TD ++ L+D +G V RD Y T
Sbjct: 319 DGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV-RDPEYGTR 377
Query: 187 LHVLARK--PSAFASRNQG 203
+ LA+ PSA NQG
Sbjct: 378 MDHLAKDICPSAMGYHNQG 396
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 137 DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLED----------HSGLAVARDGNYETA 186
D KA+ LT D+N + +T TD ++ L+D +G V RD Y T
Sbjct: 319 DGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV-RDPEYGTR 377
Query: 187 LHVLARK--PSAFASRNQG 203
+ LA+ PSA NQG
Sbjct: 378 MDHLAKDICPSAMGYHNQG 396
>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
Length = 599
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 137 DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLED----------HSGLAVARDGNYETA 186
D KA+ LT D+N + +T TD ++ L+D +G V RD Y T
Sbjct: 319 DGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV-RDPEYGTR 377
Query: 187 LHVLARK--PSAFASRNQG 203
+ LA+ PSA NQG
Sbjct: 378 MDHLAKDICPSAMGYHNQG 396
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK 103
+G T LH A + VE LL+ D L+ +NG T F A AGS+ + K+ L K
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 104 N 104
Sbjct: 95 G 95
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 7 LNICVPLQKAALKGNWPTAKHL----LGNED-------PRSILCAGIAKGYETLLHLAAG 55
L++ P KA L G + + L GNE+ P ++ C T LHLAAG
Sbjct: 8 LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG 67
Query: 56 ARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGEN 115
+ V+ LL+ D+ +D+ G A + G + +++LK + M +
Sbjct: 68 YNRVRIVQLLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ- 124
Query: 116 MTPLYMAA 123
TPL+ AA
Sbjct: 125 FTPLHEAA 132
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 30 GNEDPRSILCAGIA------KGYETLLHLAAGARQTGFVEELLKLMKP-EDLTLQDRNGN 82
G +D IL A A K T LHLAA + G +E + L++ D+ QD+ G
Sbjct: 35 GQDDEVRILMANGADVAAKDKNGSTPLHLAA---RNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 83 TAFCFAVAAGSIHIAKIM 100
TAF ++ G+ +A+I+
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 30 GNEDPRSILCAGIA------KGYETLLHLAAGARQTGFVEELLKLM--KPEDLTLQDRNG 81
G +D IL A A K T LHLAA + G +E ++KL+ D+ QD+ G
Sbjct: 17 GQDDEVRILMANGADVAAKDKNGSTPLHLAA---RNGHLE-VVKLLLEAGADVNAQDKFG 72
Query: 82 NTAFCFAVAAGSIHIAKIM 100
TAF ++ G+ +A+I+
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 170 EDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQL--VKSLWEAIL 224
++H+ +A+AR YE+ALH+L RK + R L SAL+ + +W AI+
Sbjct: 207 DNHTNVAIARH-MYESALHILRRKYDEWQPRV------LTCSALEKRGIDEIWHAII 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,236,945
Number of Sequences: 62578
Number of extensions: 542886
Number of successful extensions: 1211
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 124
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)