Query 044420
Match_columns 545
No_of_seqs 580 out of 3169
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-51 4.3E-56 427.0 30.6 349 5-372 10-388 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 7.4E-47 2.5E-51 391.2 29.0 325 5-348 43-396 (437)
3 3utm_A Tankyrase-1; tankyrase, 100.0 1.3E-45 4.5E-50 369.9 23.2 307 6-378 21-330 (351)
4 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-45 6.5E-50 367.2 23.9 292 4-330 20-322 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-43 3.8E-48 344.9 27.6 270 7-306 3-283 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-42 5.3E-47 336.9 23.4 255 45-330 4-274 (285)
7 3d9h_A CDNA FLJ77766, highly s 100.0 4.3E-42 1.5E-46 334.3 22.2 255 5-329 11-273 (285)
8 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-41 4E-46 326.9 21.6 249 8-325 2-254 (261)
9 2xai_A ASB-9, ankyrin repeat a 100.0 1.5E-41 5.1E-46 326.2 21.5 247 45-371 2-248 (261)
10 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-40 4.8E-45 331.9 28.1 261 6-299 56-328 (337)
11 2fo1_E LIN-12 protein; beta-ba 100.0 8.6E-42 2.9E-46 345.2 17.9 264 5-330 90-367 (373)
12 3utm_A Tankyrase-1; tankyrase, 100.0 9E-41 3.1E-45 334.7 24.0 296 5-371 54-349 (351)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 2.5E-41 8.6E-46 323.1 18.5 226 4-329 5-243 (253)
14 2fo1_E LIN-12 protein; beta-ba 100.0 6.5E-42 2.2E-46 346.1 14.6 276 9-349 37-366 (373)
15 1oy3_D Transcription factor in 100.0 5.8E-41 2E-45 325.6 17.7 250 41-321 4-270 (282)
16 3ljn_A Hypothetical protein; a 100.0 4.5E-41 1.5E-45 339.2 16.0 265 41-328 15-308 (364)
17 3d9h_A CDNA FLJ77766, highly s 100.0 1.3E-40 4.6E-45 323.7 17.8 246 42-371 11-265 (285)
18 1k1a_A B-cell lymphoma 3-encod 100.0 4.7E-40 1.6E-44 311.6 21.0 226 5-330 5-237 (241)
19 4b93_B Ankyrin repeat domain-c 100.0 1.3E-40 4.3E-45 320.4 16.7 217 4-321 6-230 (269)
20 3aji_A 26S proteasome non-ATPa 100.0 8.1E-40 2.8E-44 308.0 20.1 222 7-329 4-225 (231)
21 3b7b_A Euchromatic histone-lys 100.0 2.2E-39 7.7E-44 306.2 21.6 218 42-324 7-225 (237)
22 2dzn_A Probable 26S proteasome 100.0 8.8E-39 3E-43 300.2 21.9 210 9-319 2-218 (228)
23 3b7b_A Euchromatic histone-lys 100.0 5.4E-39 1.8E-43 303.6 20.5 221 72-373 2-222 (237)
24 1s70_B 130 kDa myosin-binding 100.0 6.6E-40 2.3E-44 321.2 13.7 264 15-318 4-274 (299)
25 3ljn_A Hypothetical protein; a 100.0 2.1E-39 7.2E-44 326.9 16.7 260 4-297 15-314 (364)
26 1oy3_D Transcription factor in 100.0 6.5E-39 2.2E-43 311.1 18.1 253 74-373 2-270 (282)
27 1yyh_A HN1;, notch 1, ankyrin 100.0 2E-39 7E-44 309.8 14.3 217 41-373 5-235 (253)
28 1k1a_A B-cell lymphoma 3-encod 100.0 3E-38 1E-42 299.1 19.9 221 41-372 4-227 (241)
29 2dzn_A Probable 26S proteasome 100.0 7.2E-38 2.5E-42 294.0 18.9 213 46-371 2-218 (228)
30 3aji_A 26S proteasome non-ATPa 100.0 2.6E-37 9E-42 290.8 20.9 216 43-374 3-218 (231)
31 3kea_A K1L; tropism, ANK repea 100.0 1.6E-37 5.5E-42 301.9 19.6 234 17-331 7-243 (285)
32 4b93_B Ankyrin repeat domain-c 100.0 3.6E-38 1.2E-42 303.2 12.9 215 41-372 6-229 (269)
33 3eu9_A Huntingtin-interacting 100.0 4.8E-36 1.6E-40 283.5 24.4 229 6-298 6-236 (240)
34 2f8y_A Notch homolog 1, transl 100.0 1.3E-36 4.5E-41 284.4 20.1 215 20-297 2-216 (223)
35 1s70_B 130 kDa myosin-binding 100.0 5.5E-37 1.9E-41 300.4 15.4 250 5-294 36-286 (299)
36 1sw6_A Regulatory protein SWI6 100.0 9.5E-38 3.3E-42 309.6 8.2 266 9-320 23-327 (327)
37 3kea_A K1L; tropism, ANK repea 100.0 2.7E-36 9.1E-41 293.3 16.8 219 4-298 26-247 (285)
38 1ikn_D Protein (I-kappa-B-alph 100.0 5.4E-37 1.8E-41 289.8 11.3 221 41-370 3-228 (236)
39 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-36 6.3E-41 286.1 13.8 219 4-320 3-230 (236)
40 2rfa_A Transient receptor pote 100.0 6.5E-35 2.2E-39 274.6 21.7 193 9-297 3-222 (232)
41 2rfa_A Transient receptor pote 100.0 2.6E-35 8.7E-40 277.4 18.8 208 45-331 2-219 (232)
42 3eu9_A Huntingtin-interacting 100.0 6.6E-35 2.3E-39 275.6 21.5 197 5-263 38-235 (240)
43 2f8y_A Notch homolog 1, transl 100.0 1E-35 3.5E-40 278.3 13.9 211 56-330 1-212 (223)
44 3hra_A Ankyrin repeat family p 100.0 5.1E-34 1.7E-38 262.2 21.2 198 7-295 3-201 (201)
45 1sw6_A Regulatory protein SWI6 100.0 2.7E-36 9.2E-41 299.2 4.5 265 43-371 20-326 (327)
46 3hra_A Ankyrin repeat family p 100.0 5.4E-34 1.8E-38 262.1 17.9 191 43-329 2-198 (201)
47 2etb_A Transient receptor pote 100.0 2.4E-34 8.1E-39 275.1 13.6 207 45-331 1-243 (256)
48 2etb_A Transient receptor pote 100.0 7.9E-34 2.7E-38 271.5 14.9 195 9-298 2-247 (256)
49 2pnn_A Transient receptor pote 100.0 4.1E-34 1.4E-38 276.3 12.8 221 3-313 7-271 (273)
50 4gpm_A Engineered protein OR26 100.0 6.9E-33 2.4E-37 246.3 19.1 157 48-298 6-162 (169)
51 2pnn_A Transient receptor pote 100.0 9.1E-34 3.1E-38 273.8 11.4 214 41-331 8-255 (273)
52 3jxi_A Vanilloid receptor-rela 100.0 3.1E-32 1.1E-36 261.0 14.8 206 7-298 3-251 (260)
53 4gpm_A Engineered protein OR26 100.0 3.3E-31 1.1E-35 235.5 18.8 159 11-178 6-164 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 3.2E-32 1.1E-36 260.9 11.7 210 43-331 2-247 (260)
55 2vge_A RELA-associated inhibit 100.0 4E-33 1.4E-37 261.4 1.9 190 41-328 16-207 (229)
56 4hbd_A KN motif and ankyrin re 100.0 4E-31 1.4E-35 255.4 15.1 190 10-295 77-273 (276)
57 3v30_A DNA-binding protein rfx 100.0 2.1E-30 7.1E-35 231.9 18.2 170 46-312 2-171 (172)
58 2rfm_A Putative ankyrin repeat 100.0 2.5E-30 8.5E-35 235.8 18.3 162 40-295 29-190 (192)
59 4hbd_A KN motif and ankyrin re 100.0 4.7E-31 1.6E-35 255.0 10.5 189 45-329 75-270 (276)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.2E-30 1.8E-34 226.8 16.4 159 45-297 4-162 (162)
61 3v31_A Ankyrin repeat family A 100.0 1.4E-29 4.8E-34 225.3 18.0 159 45-297 2-160 (167)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.6E-29 8.8E-34 224.1 18.1 160 42-295 10-169 (169)
63 3v30_A DNA-binding protein rfx 100.0 2E-29 6.9E-34 225.4 16.2 170 9-186 2-171 (172)
64 2rfm_A Putative ankyrin repeat 100.0 6.7E-30 2.3E-34 233.0 13.1 162 73-330 27-188 (192)
65 2aja_A Ankyrin repeat family p 100.0 5.6E-32 1.9E-36 271.0 -0.8 266 7-327 90-367 (376)
66 2aja_A Ankyrin repeat family p 100.0 5E-32 1.7E-36 271.3 -1.2 261 10-373 66-361 (376)
67 1ycs_B 53BP2, P53BP2; ankyrin 100.0 4.3E-30 1.5E-34 242.8 11.2 215 44-369 3-226 (239)
68 3f6q_A Integrin-linked protein 100.0 5E-29 1.7E-33 224.5 16.7 169 44-309 3-171 (179)
69 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.8E-29 1.3E-33 221.3 15.5 125 8-140 4-128 (162)
70 2vge_A RELA-associated inhibit 100.0 4E-31 1.4E-35 247.8 0.8 185 4-200 16-205 (229)
71 3twr_A Tankyrase-2; ankyrin re 100.0 5.4E-29 1.8E-33 221.0 13.3 96 43-140 5-100 (165)
72 1awc_B Protein (GA binding pro 100.0 2.5E-28 8.6E-33 213.9 16.8 90 47-140 3-92 (153)
73 3f6q_A Integrin-linked protein 100.0 2.4E-28 8.3E-33 220.0 15.5 169 7-183 3-171 (179)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.5E-28 1.2E-32 213.6 16.0 154 46-294 2-155 (156)
75 3v31_A Ankyrin repeat family A 100.0 3.2E-28 1.1E-32 216.5 16.0 157 8-173 2-158 (167)
76 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-27 4.1E-32 213.3 17.7 159 5-172 10-168 (169)
77 3twr_A Tankyrase-2; ankyrin re 100.0 8E-28 2.7E-32 213.5 14.5 160 6-174 5-164 (165)
78 1awc_B Protein (GA binding pro 99.9 1.7E-27 5.9E-32 208.5 15.6 145 8-160 1-145 (153)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.9E-28 9.9E-33 230.3 7.4 181 7-196 3-194 (239)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.9E-27 2.3E-31 205.3 15.6 153 8-169 1-153 (156)
81 1d9s_A Cyclin-dependent kinase 99.9 2.1E-26 7.2E-31 197.3 10.9 128 5-140 8-136 (136)
82 3t8k_A Uncharacterized protein 99.9 2E-26 6.8E-31 208.1 11.2 161 46-297 6-179 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-26 6.1E-31 202.8 10.6 141 5-153 8-149 (156)
84 2jab_A H10-2-G3; HER2, darpin, 99.9 8.7E-26 3E-30 193.4 13.5 129 3-138 8-136 (136)
85 1d9s_A Cyclin-dependent kinase 99.9 7.1E-26 2.4E-30 194.0 12.1 134 71-297 2-136 (136)
86 3t8k_A Uncharacterized protein 99.9 1.3E-26 4.4E-31 209.3 6.0 161 7-177 4-181 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.8E-25 1.3E-29 186.3 14.0 126 8-140 1-126 (126)
88 3ui2_A Signal recognition part 99.9 4.2E-26 1.4E-30 216.0 3.8 122 8-140 14-136 (244)
89 3deo_A Signal recognition part 99.9 5.1E-26 1.7E-30 205.5 4.1 167 15-260 6-181 (183)
90 1bi7_B P16INK4A, MTS1, multipl 99.9 7.5E-25 2.6E-29 192.3 11.5 145 41-191 7-152 (156)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.2E-23 7.6E-28 175.4 15.8 93 45-140 1-93 (126)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-24 4.3E-29 186.4 6.5 128 4-138 5-132 (137)
93 2jab_A H10-2-G3; HER2, darpin, 99.9 5.1E-23 1.7E-27 176.1 13.5 127 41-172 9-135 (136)
94 3aaa_C Myotrophin, protein V-1 99.9 1.6E-23 5.5E-28 175.9 9.3 109 8-123 6-114 (123)
95 3ehr_A Osteoclast-stimulating 99.9 1.2E-23 4.2E-28 196.1 8.2 131 6-142 70-200 (222)
96 2b0o_E UPLC1; arfgap, structur 99.9 4E-23 1.4E-27 201.3 11.0 125 10-140 152-284 (301)
97 3c5r_A BARD-1, BRCA1-associate 99.9 4.2E-23 1.4E-27 176.9 8.7 115 41-158 5-119 (137)
98 2b0o_E UPLC1; arfgap, structur 99.9 2.7E-22 9.1E-27 195.5 15.2 77 235-322 223-299 (301)
99 3aaa_C Myotrophin, protein V-1 99.9 2.5E-22 8.5E-27 168.6 12.4 111 42-155 3-113 (123)
100 3deo_A Signal recognition part 99.9 1.6E-22 5.3E-27 182.5 11.6 139 6-171 41-180 (183)
101 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.4E-22 1.8E-26 157.6 11.9 93 45-140 1-93 (93)
102 3ui2_A Signal recognition part 99.9 3.5E-22 1.2E-26 189.0 10.6 140 6-172 42-182 (244)
103 3ehr_A Osteoclast-stimulating 99.9 2.8E-22 9.6E-27 186.8 8.8 170 7-183 23-206 (222)
104 1dcq_A PYK2-associated protein 99.9 1.5E-21 5.2E-26 188.0 13.7 126 9-140 130-263 (278)
105 3jue_A Arfgap with coiled-coil 99.9 1.8E-21 6E-26 194.1 12.9 126 8-140 198-326 (368)
106 1dcq_A PYK2-associated protein 99.8 6.3E-21 2.2E-25 183.6 14.6 137 81-320 130-274 (278)
107 3lvq_E ARF-GAP with SH3 domain 99.8 3.6E-21 1.2E-25 201.3 13.2 136 10-157 133-276 (497)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.8E-21 2.7E-25 150.8 10.4 93 8-106 1-93 (93)
109 2l6b_A NR1C; ankyrin, consensu 99.8 2.8E-21 9.5E-26 160.0 7.6 108 41-151 4-111 (115)
110 3jue_A Arfgap with coiled-coil 99.8 2.5E-20 8.5E-25 185.8 12.8 150 78-320 196-348 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.8 7.5E-20 2.5E-24 191.3 14.4 91 47-140 133-232 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.3E-20 7.7E-25 154.5 7.5 108 5-119 5-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 1.2E-18 4E-23 142.8 10.1 91 41-134 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.2E-17 7.5E-22 135.2 9.4 91 4-100 19-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 60.2 17 0.00059 34.9 7.0 55 41-95 68-123 (351)
116 3k49_A MRNA-binding protein PU 55.5 94 0.0032 29.8 11.5 188 8-196 41-235 (369)
117 3gvo_A Pumilio 2, pumilio homo 40.9 1.2E+02 0.004 28.9 9.5 94 7-101 71-165 (351)
118 1gp8_A Protein (scaffolding pr 30.8 31 0.0011 20.7 2.0 17 13-29 17-33 (40)
119 4ev6_A Magnesium transport pro 29.6 57 0.002 31.0 5.1 21 474-494 281-301 (339)
120 2iub_A CORA, divalent cation t 23.1 53 0.0018 31.6 3.5 21 474-494 305-325 (363)
121 3zrh_A Ubiquitin thioesterase 21.5 89 0.0031 30.3 4.4 16 15-30 28-43 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-51 Score=426.99 Aligned_cols=349 Identities=18% Similarity=0.162 Sum_probs=287.3
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||.||..|+.++|++|++ .+ .+++ ..+..|.||||+|++.|+.+++++|++ .+++++.+|..|.||
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g-~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQ--RG-ASPN-VSNVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTP 83 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHH--TT-CCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSCCH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHH--cC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCCCCCCCH
Confidence 45679999999999999999999999 56 5665 678899999999999999999999999 799999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +..+..|.||||+|++.|+.+++++|++++++....+..|.||||+|+..+.. .
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~--~ 160 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV--R 160 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--H
T ss_pred HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH--H
Confidence 99999999999999999999997 88999999999999999999999999999998888889999999999987663 5
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhH---------hH-------HHHHHHHHHHHHHHhcCCc
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTR---------LM-------HSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~---------~~-------~~~~~~~~~l~~~l~~~~~ 228 (545)
+.++|.+.+.+++..+.+|.||||+|+..++.+.++.+..... .+ ....++++ .+++.+
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g- 235 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYG- 235 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH----HHHHTT-
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HHHHcC-
Confidence 6677778899999999999999999999998776655543110 00 12233444 444444
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCC
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHD 308 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~ 308 (545)
.+.+..+..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~ 310 (437)
T 1n11_A 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRM 310 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCC
Confidence 34455667888999999999999999999998888 788888999999999999999999999998888 7788899
Q ss_pred CCChhhhhccCCCCCccccccc-------------hhHHhHHHHhHHHHHhhhh-cCccccccCCCCCChhhhhHhhh
Q 044420 309 QNNMLHLAAKSPHPSRVSIVSG-------------AALQMHRELLWFKEVEKIV-QPTFREMKNSEGKTPRELFSIEH 372 (545)
Q Consensus 309 G~TpLh~A~~~~~~~~~~~L~~-------------~~~~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~~~ 372 (545)
|+||||+|+..|+.+++++|.+ .+++.+......+.++.++ .|++++.+|.+|+||+++|.+..
T Consensus 311 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp CCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999888888743 3455566666666666666 57888888888888888887654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.4e-47 Score=391.17 Aligned_cols=325 Identities=20% Similarity=0.186 Sum_probs=268.2
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||+||..|+.+++++|++ .+ .+++ .++..|+||||+|+..|+.++|++|++ +|++++..|..|.||
T Consensus 43 ~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g~t~ 116 (437)
T 1n11_A 43 SNVKVETPLHMAARAGHTEVAKYLLQ--NK-AKVN-AKAKDDQTPLHCAARIGHTNMVKLLLE--NNANPNLATTAGHTP 116 (437)
T ss_dssp SSSCCCCHHHHHHHHTCHHHHHHHHH--HT-CCSS-CCCTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh--CC-CCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHh--CCCCCCCCCCCCCcH
Confidence 45678999999999999999999998 55 5565 678899999999999999999999999 789999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.++++.|++++++. +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+.. .
T Consensus 117 L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~ 193 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL--D 193 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH--H
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH--H
Confidence 99999999999999999999886 77888899999999999999999999999998888888888999988887653 5
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh---------hHhH-------HHHHHHHHHHHHHHhcCCc
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL---------TRLM-------HSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~l~~~l~~~~~ 228 (545)
+.++|.+.+.+++..+.+|.||||+|+..|+.+..+.+... .+.+ ....+ +++.+++.+
T Consensus 194 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~~- 268 (437)
T 1n11_A 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE----MVALLLSKQ- 268 (437)
T ss_dssp HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTT-
T ss_pred HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH----HHHHHHhcC-
Confidence 56677777888888888888888888888877665544431 0111 11223 455555555
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCC
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHD 308 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~ 308 (545)
.+.+..+..|.||||+|++.|+.+++++|+++|.+ ++.+|..|+||||+|+.+|+.+++++|+++|++ +|.+|..
T Consensus 269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~n~~~~~ 343 (437)
T 1n11_A 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD----VNAKTKL 343 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC----TTCCCTT
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC----CCCCCCC
Confidence 45566778899999999999999999999999999 899999999999999999999999999999998 7889999
Q ss_pred CCChhhhhccCCCCCccccccc-------------hhHHhHHHHhHHHHHhhh
Q 044420 309 QNNMLHLAAKSPHPSRVSIVSG-------------AALQMHRELLWFKEVEKI 348 (545)
Q Consensus 309 G~TpLh~A~~~~~~~~~~~L~~-------------~~~~~~~~l~~~~~v~~l 348 (545)
|+||||+|++.|+.+++++|.+ .+++++....+.+.++.+
T Consensus 344 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999853 356666666555444433
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.3e-45 Score=369.91 Aligned_cols=307 Identities=17% Similarity=0.100 Sum_probs=241.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+..+.++||.||+.|+.+.++.++. ..+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~-~~~-~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLT-PLN-VNCH-ASDGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCC-TTT-TTCC-CSSTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHH-hcC-CCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCcHH
Confidence 3457899999999999999999999 455 5554 788999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
|+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+..|.+|++.++..... +..
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~-~~~ 173 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR-ERL 173 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHH-HHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhH-HHH
Confidence 9999999999999999999997 88999999999999999999999999999999888999999999887654321 111
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
.... ..+++..++..++.+ .+..++... ......+..|.||||+|
T Consensus 174 ~~~~-------------~~~~~~~~~~~~~~~---------------------~~~~~l~~~-~~~~~~~~~~~t~L~~A 218 (351)
T 3utm_A 174 TYEF-------------KGHSLLQAAREADLA---------------------KVKKTLALE-IINFKQPQSHETALHCA 218 (351)
T ss_dssp HHHH-------------HHHHHHHHHHTTCHH---------------------HHHHHTTTC-CTTCCCTTTCCCHHHHH
T ss_pred Hhhh-------------cccHHHHHHHhccHH---------------------HHHHHHHhh-cccccCCCCCCCHHHHH
Confidence 1111 123455555555331 122223222 11223446678888888
Q ss_pred Hhc---CcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCC
Q 044420 246 AEL---GNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHP 322 (545)
Q Consensus 246 ~~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~ 322 (545)
+.. +..+++++|++.|++ ++.+|.+|+||||+|+.+|+.+++++|+++|++ +|.+|..|+||||+|+..|+.
T Consensus 219 ~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~ 293 (351)
T 3utm_A 219 VASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----MNALDSLGQTALHRAALAGHL 293 (351)
T ss_dssp HHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcH
Confidence 887 557888888888888 788888888888888888888888888888887 677888888888888888887
Q ss_pred CccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhhhhhhh
Q 044420 323 SRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRS 378 (545)
Q Consensus 323 ~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~~l~~~ 378 (545)
+++++|.+ .|++++.+|.+|+||+++|.+...+++.+
T Consensus 294 ~~v~~Ll~-------------------~gad~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 294 QTCRLLLS-------------------YGSDPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp HHHHHHHH-------------------TTCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHH-------------------cCCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 77777632 26677888888888888886555544443
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-45 Score=367.15 Aligned_cols=292 Identities=19% Similarity=0.185 Sum_probs=254.4
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
+...+|.|+||.||++|+.++|+.||+ +| ++++...+..|+||||+||+.|+.++|++|++ +|++++.+|..+.+
T Consensus 20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~--~G-advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 20 RAAVEDNHLLIKAVQNEDVDLVQQLLE--GG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGAT 94 (337)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHH--HT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCC
T ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHH--CC-CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCc
Confidence 445678999999999999999999999 77 77774444569999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC----------CCCChhhHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL----------TPEDQNALF 153 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~----------~~~~~t~l~ 153 (545)
|+|.++..++.++++.+++.++++ +.+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred hhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence 999999999999999999999997 899999999999999999999999999999986543 345789999
Q ss_pred HHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhh
Q 044420 154 FTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTD 233 (545)
Q Consensus 154 ~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 233 (545)
+|+..+. .+++..+|.+.|++++.+|..|.||+|.++..+.... .+.+++.|++.+ .+++.
T Consensus 174 ~A~~~g~-~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~-----------------~~~i~~lLl~~g-ad~n~ 234 (337)
T 4g8k_A 174 DAAEKGH-VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-----------------VEAITHLLLDHG-ADVNV 234 (337)
T ss_dssp HHHHHTC-HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT-----------------HHHHHHHHHHTT-CCTTC
T ss_pred HHHHCCC-HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc-----------------HHHHHHHHHHCC-CCCCC
Confidence 9987754 5777777778899999999999999999887664321 123445556665 56667
Q ss_pred hccCCChHHHHHHhcCcHHHHHHHHHH-CCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 234 LIRKPSHLLFDAAELGNFEFLAELICS-YPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 234 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
+|.+|.||||+|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.++|++|+++|++ +| +.||
T Consensus 235 ~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n-----~~~~ 304 (337)
T 4g8k_A 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TD-----CGDL 304 (337)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS----ST-----TCCH
T ss_pred cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CC-----CCCH
Confidence 789999999999999999999999986 667 999999999999999999999999999999998 44 3469
Q ss_pred hhhhccCCCCCccccccc
Q 044420 313 LHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 313 Lh~A~~~~~~~~~~~L~~ 330 (545)
||+|++.|+.+++++|.+
T Consensus 305 L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 305 VMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 999999999999988843
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-43 Score=344.93 Aligned_cols=270 Identities=20% Similarity=0.182 Sum_probs=236.9
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.+|.||||.|++.|+.+++++|++ .+ .+++...+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~--~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLE--GG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--TT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHH--cC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHH
Confidence 468999999999999999999999 55 56664458889999999999999999999999 89999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC----------CCCChhhHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL----------TPEDQNALFFTC 156 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~----------~~~~~t~l~~aa 156 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 999999999999999999997 889999999999999999999999999999987766 677889999998
Q ss_pred HhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc
Q 044420 157 ISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR 236 (545)
Q Consensus 157 ~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (545)
..+. .+.+..++...+.+++.+|..|.||||+|+..++... ..++ ++.+++.+ .+.+..+.
T Consensus 157 ~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-------------~~~i----~~~Ll~~g-~~~~~~~~ 217 (285)
T 1wdy_A 157 EKGH-VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-------------VEAI----THLLLDHG-ADVNVRGE 217 (285)
T ss_dssp HHTC-HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT-------------HHHH----HHHHHHTT-CCSSCCCT
T ss_pred HcCC-HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch-------------HHHH----HHHHHHcC-CCCCCcCC
Confidence 8655 4677777767799999999999999999999986432 1233 44455554 45566778
Q ss_pred CCChHHHHHHhcCcHHHHHHHHH-HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhccc
Q 044420 237 KPSHLLFDAAELGNFEFLAELIC-SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKD 306 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d 306 (545)
.|.||||+|++.|+.+++++|++ .+.+ ++.+|.+|+||||+|+..++.+++++|+++|++ ++.+|
T Consensus 218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~----~~~~d 283 (285)
T 1wdy_A 218 RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGD 283 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC----CCccc
Confidence 89999999999999999999999 7888 899999999999999999999999999999999 55555
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-42 Score=336.88 Aligned_cols=255 Identities=17% Similarity=0.176 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQ-DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+|+||||.|++.|+.+++++|++ .+.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 58899999999999999999999 79999988 788999999999999999999999999997 889999999999999
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccccc----------CCCCchHHHHHHhC
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR----------DGNYETALHVLARK 193 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~----------d~~g~tpLh~A~~~ 193 (545)
..|+.+++++|+++|++++..+..|.||||+|+..+.. .+.++|.+.+.+++.. +..|.||||.|+..
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV--KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH--HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH--HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 99999999999999999999999999999999987653 5667777888888877 78899999999999
Q ss_pred CCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCc----HHHHHHHHHHCCCcccccc
Q 044420 194 PSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGN----FEFLAELICSYPDLVHELD 269 (545)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d 269 (545)
|+. + +++.+++....+.+..+..|.||||+|+..|+ .+++++|+++|++ ++.+|
T Consensus 159 ~~~-----------------~----~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~ 216 (285)
T 1wdy_A 159 GHV-----------------E----VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRG 216 (285)
T ss_dssp TCH-----------------H----HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCC
T ss_pred CCH-----------------H----HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcC
Confidence 965 3 35555555336667778999999999999999 9999999999999 89999
Q ss_pred cCCCcHHHHHHHhCchHHHHHHHh-hccchhhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 270 DNNRSIFHIAVLHRHANIFNLIYE-IGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 270 ~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
..|+||||+|+..|+.+++++|++ .|++ ++.+|.+|+||||+|++.++.+++++|.+
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999999 7888 78899999999999999999999988853
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=334.28 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=189.9
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCc--------hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPR--------SILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTL 76 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 76 (545)
-...|.|+||+||..|+.+.+..++. ..++ .......|.+|+||||+|+..|+.+++++|++ .|++++.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~ 87 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKP-AGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNI 87 (285)
T ss_dssp --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH--TTCCSCE
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCC-CccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHH--CCCCCCC
Confidence 34679999999999999888887654 2110 01123578899999999999999999999999 7999999
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHH
Q 044420 77 QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTC 156 (545)
Q Consensus 77 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa 156 (545)
+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------- 153 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------------- 153 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC-------------
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC-------------
Confidence 9999999999999999999999999999997 89999999999999999999999999999986321
Q ss_pred HhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc
Q 044420 157 ISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR 236 (545)
Q Consensus 157 ~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (545)
+.+|.||||+|+..|+. ++ ++.+++.+ .+++..|.
T Consensus 154 -----------------------~~~g~t~L~~A~~~g~~-----------------~~----v~~Ll~~g-~~~~~~d~ 188 (285)
T 3d9h_A 154 -----------------------ESDLASPIHEAARRGHV-----------------EC----VNSLIAYG-GNIDHKIS 188 (285)
T ss_dssp -----------------------SCTTSCHHHHHHHHTCH-----------------HH----HHHHHHTT-CCTTCCBT
T ss_pred -----------------------CCCCCCHHHHHHHcCCH-----------------HH----HHHHHHCC-CCCCCcCC
Confidence 22366677777766643 23 33333343 34555667
Q ss_pred CCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhh
Q 044420 237 KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLA 316 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A 316 (545)
.|.||||+|+..|+.+++++|++.|++ ++ .|..|+||||+|+..++.+++++|+++|++ ++.+|.+|+||||+|
T Consensus 189 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 189 HLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDFGAD----TQAKNAEGKRPVELV 262 (285)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGS
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHh
Confidence 888999999999999999999999999 67 489999999999999999999999999998 788999999999999
Q ss_pred ccCCCCCcccccc
Q 044420 317 AKSPHPSRVSIVS 329 (545)
Q Consensus 317 ~~~~~~~~~~~L~ 329 (545)
+. +.+++++|.
T Consensus 263 ~~--~~~~~~~Ll 273 (285)
T 3d9h_A 263 PP--ESPLAQLFL 273 (285)
T ss_dssp CT--TSHHHHHHH
T ss_pred cC--ccHHHHHHH
Confidence 94 456666664
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=326.91 Aligned_cols=249 Identities=15% Similarity=0.098 Sum_probs=200.7
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|+||||+||..|+.+++++|++ .+ .+++ ..|.+|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS--QG-WAVN-IITADHVSPLHEACLGGHLSCVKILLK--HGAQVNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TT-CCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH--CC-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHH
Confidence 58888888888888888888888 55 5555 678888888888888888888888888 788888888888888888
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ + .+.+|.||||+|+..|+.+++++|+++|++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------- 126 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGN--------------------------- 126 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------
T ss_pred HHHcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------------------------
Confidence 88888888888888888886 3 355688888888888888888888888775
Q ss_pred HHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh
Q 044420 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE 247 (545)
Q Consensus 168 lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~ 247 (545)
++.+|.+|.||||+|+..|+. ++++.+++...+.+ .+..|.||||+|+.
T Consensus 127 --------~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g~~~~------~~~~g~t~Lh~A~~ 175 (261)
T 2xai_A 127 --------IDHKISHLGTPLYLACENQQR-----------------ACVKKLLESGADVN------QGKGQDSPLHAVAR 175 (261)
T ss_dssp --------TTCCBTTTBCHHHHHHHTTCH-----------------HHHHHHHHHTCCTT------CCBTTBCHHHHHHH
T ss_pred --------CCcCCCCCCCHHHHHHHhCCH-----------------HHHHHHHHcCCCCC------CCCCCCChHHHHHH
Confidence 456677777888888877743 45555555443332 25789999999999
Q ss_pred cCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchh----hhhhcccCCCCChhhhhccCCCCC
Q 044420 248 LGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE----LMATFKDHDQNNMLHLAAKSPHPS 323 (545)
Q Consensus 248 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~----~~~n~~d~~G~TpLh~A~~~~~~~ 323 (545)
.|+.+++++|+++|++ ++.+|.+|+||||+|+.+ .+++++|++++..+. ..++.+|..|+||+|+|.+...++
T Consensus 176 ~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 176 TASEELACLLMDFGAD-TQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred cCCHHHHHHHHHcCCC-CCCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 9999999999999999 999999999999999954 469999999876542 136778999999999999987665
Q ss_pred cc
Q 044420 324 RV 325 (545)
Q Consensus 324 ~~ 325 (545)
.+
T Consensus 253 ~l 254 (261)
T 2xai_A 253 DL 254 (261)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=326.20 Aligned_cols=247 Identities=15% Similarity=0.155 Sum_probs=208.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
+|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence 58999999999999999999999 79999999999999999999999999999999999997 8999999999999999
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
.|+.+++++|+++|++++ .+.+|.||||+|+..|+.
T Consensus 79 ~~~~~~v~~Ll~~g~~~~------------------------------------~~~~g~t~L~~A~~~~~~-------- 114 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQ------------------------------------PESDLASPIHEAARRGHV-------- 114 (261)
T ss_dssp HTCHHHHHHHHHTTCCSS------------------------------------CSCTTCCHHHHHHHTTCH--------
T ss_pred cCCHHHHHHHHHCCCCCC------------------------------------CCCCCCCHHHHHHHcCcH--------
Confidence 999999999999998622 234588899999988854
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
++ ++.+++.+ .+++..+..|.||||+|+..|+.+++++|+++|++ ++. |..|+||||+|+..++
T Consensus 115 ---------~~----v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~Lh~A~~~~~ 178 (261)
T 2xai_A 115 ---------EC----VNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-VNQ-GKGQDSPLHAVARTAS 178 (261)
T ss_dssp ---------HH----HHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC-TTC-CBTTBCHHHHHHHHTC
T ss_pred ---------HH----HHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCC-CCCCCChHHHHHHcCC
Confidence 33 44444454 55667788999999999999999999999999999 774 8999999999999999
Q ss_pred hHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCCh
Q 044420 285 ANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTP 364 (545)
Q Consensus 285 ~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tp 364 (545)
.+++++|+++|++ ++.+|.+|+||||+|+..+ +++++|.+..- -..+.+..+++.+|..|+||
T Consensus 179 ~~~v~~Ll~~gad----~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~-----------~~~l~~~~~~~~r~~~g~t~ 241 (261)
T 2xai_A 179 EELACLLMDFGAD----TQAKNAEGKRPVELVPPES--PLAQLFLEREG-----------PPSLMQLCRLRIRKCFGIQQ 241 (261)
T ss_dssp HHHHHHHHHTTCC----TTCCCTTSCCGGGGSCTTC--THHHHHHHC-C-----------CCCHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHcCCC----CCCcCCCCCChhhhccccc--cHHHHHHhccC-----------CccHHHHHHHHHHHHhchhc
Confidence 9999999999999 7889999999999999654 45555532100 00011123567899999999
Q ss_pred hhhhHhh
Q 044420 365 RELFSIE 371 (545)
Q Consensus 365 l~~a~~~ 371 (545)
+|++.+.
T Consensus 242 l~~~~~~ 248 (261)
T 2xai_A 242 HHKITKL 248 (261)
T ss_dssp GGGGGGS
T ss_pred cccCccc
Confidence 9998764
No 10
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.4e-40 Score=331.87 Aligned_cols=261 Identities=20% Similarity=0.123 Sum_probs=232.8
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+..|+||||+||+.|+.++|++|++ ++ +.++ ..+..+.+|+|.++..++.+++..+++ .+.+++.+|..|.|||
T Consensus 56 ~~~g~TpLh~A~~~g~~~iv~~Ll~--~g-a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~g~t~l 129 (337)
T 4g8k_A 56 EEGGWTPLHNAVQMSREDIVELLLR--HG-ADPV-LRKKNGATPFILAAIAGSVKLLKLFLS--KGADVNECDFYGFTAF 129 (337)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCBCTTCCBHH
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHH--cC-Cchh-hhccCCCchhHHHHhcccchhhHHhhh--ccchhhhhccCCCCHH
Confidence 3458999999999999999999999 77 7776 789999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccc---------cCCCCCCCcHHHHHHHcCCHHHHHHHHH-cccCCccCCCCChhhHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLL---------TMRGGENMTPLYMAAVLAQRDMALYLYD-DAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~a 155 (545)
|+|+..|+.+++++|+++|+++. ...+..|.||||+|++.|+.+++++|++ .|++++..+..|.++++++
T Consensus 130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~ 209 (337)
T 4g8k_A 130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHH
Confidence 99999999999999999998762 1345679999999999999999999996 5899999999999999998
Q ss_pred HHhcC--cHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhh
Q 044420 156 CISTD--LHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTD 233 (545)
Q Consensus 156 a~~~~--~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 233 (545)
+.... ..+.+.++|.++|++++.+|.+|+||||+|+..|+.+ .++.++.....+++.
T Consensus 210 ~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~---------------------~v~~Ll~~~~~~vn~ 268 (337)
T 4g8k_A 210 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG---------------------LVQRLLEQEHIEIND 268 (337)
T ss_dssp HHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHH---------------------HHHHHHTSTTCCTTC
T ss_pred HHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhH---------------------HHHHHHHhcCCcccC
Confidence 87644 3467889999999999999999999999999999653 355666665577888
Q ss_pred hccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchh
Q 044420 234 LIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299 (545)
Q Consensus 234 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 299 (545)
+|.+|.||||+|++.|+.++|++|+++|++ ++ +.+|||+|+.+|+.++|++|+++|++++
T Consensus 269 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 269 TDSDGKTALLLAVELKLKKIAELLCKRGAS-TD-----CGDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-ST-----TCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CC-----CCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 899999999999999999999999999998 55 4569999999999999999999999955
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.6e-42 Score=345.22 Aligned_cols=264 Identities=17% Similarity=0.179 Sum_probs=195.9
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCcccc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIA-KGYETLLHLAAGARQTGFVEELL--------KLMKPEDLT 75 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~ 75 (545)
.+.+|.||||.||..| .++++.|+. ..++ ..| ..|+||||+|+..|+.+++++|+ + .|+++|
T Consensus 90 ~~~~g~t~L~~Aa~~~-~~~~~~L~~-----~~~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~--~ga~vn 160 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGS-YAITEPITR-----ESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVN 160 (373)
T ss_dssp ----CCCHHHHHHHSS-SCCCSCCST-----TTTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH--TCCCTT
T ss_pred CCCCCccHHHHHhcCC-chHHHHhcc-----cccc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCCCCc
Confidence 4566888888888844 467777665 3333 345 67888888888888887777776 5 688888
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc---cCCccCCCCChhhH
Q 044420 76 LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA---KAKDNLTPEDQNAL 152 (545)
Q Consensus 76 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~~t~l 152 (545)
.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++ .+++..+..|.|||
T Consensus 161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 161 AMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence 88888888888888888888888888888886 788888888888888888888888888887 67777788888888
Q ss_pred HHHHHhcCc-HHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhh
Q 044420 153 FFTCISTDL-HDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEF 231 (545)
Q Consensus 153 ~~aa~~~~~-~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 231 (545)
|+|+..++. ...+.++|.+.|.+++..+. ...
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~-----------------------------------------------~~~ 272 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGA-----------------------------------------------ARK 272 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSG-----------------------------------------------GGT
T ss_pred HHHHHhCCcchHHHHHHHHHCCCCcccccc-----------------------------------------------ccc
Confidence 888877541 23445556666666654221 011
Q ss_pred hhhccCCChHHHHHHhcCcHHHHHHHHHHC-CCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCC
Q 044420 232 TDLIRKPSHLLFDAAELGNFEFLAELICSY-PDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQN 310 (545)
Q Consensus 232 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~ 310 (545)
...|..|.||||+|+..|+.+++++|++++ .+ ++.+|.+|+||||+|+.+|+.+++++|+++|++ ++.+|..|+
T Consensus 273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad----~~~~d~~g~ 347 (373)
T 2fo1_E 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDH 347 (373)
T ss_dssp SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSC
T ss_pred CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccCCCCCCC
Confidence 123456777777777777888888888776 55 777777888888888888888888888887777 667777788
Q ss_pred ChhhhhccCCCCCccccccc
Q 044420 311 NMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 311 TpLh~A~~~~~~~~~~~L~~ 330 (545)
||||+|+..|+.+++++|.+
T Consensus 348 t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 348 TARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp CHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHh
Confidence 88888888888777777754
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9e-41 Score=334.69 Aligned_cols=296 Identities=18% Similarity=0.124 Sum_probs=235.1
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||+||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~iv~~Ll~--~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQ--HG-ADVH-AKDKGGLVPLHNACSYGHYEVTELLLK--HGACVNAMDLWQFTP 127 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCCC-ccCCCCCcHHHHHHHCCCHHHHHHHHH--CCCCCCCCCCCCCCH
Confidence 45679999999999999999999999 66 6666 789999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +..+..|.||+++|+..+..+.+++.... .+++.++...+ .+.
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~ 193 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREAD-LAK 193 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhcc-HHH
Confidence 99999999999999999999997 89999999999999998888888876642 45666666554 356
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFD 244 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~ 244 (545)
+..++.... .....+..|.||||+|+..++.. ..++++. +++.+ .+++..+..|.||||+
T Consensus 194 ~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~~--------------~~~~~~~----Ll~~g-~~~~~~~~~g~t~L~~ 253 (351)
T 3utm_A 194 VKKTLALEI-INFKQPQSHETALHCAVASLHPK--------------RKQVAEL----LLRKG-ANVNEKNKDFMTPLHV 253 (351)
T ss_dssp HHHHTTTCC-TTCCCTTTCCCHHHHHHHCCSTT--------------HHHHHHH----HHHTT-CCTTCCCTTCCCHHHH
T ss_pred HHHHHHhhc-ccccCCCCCCCHHHHHHHHhCcc--------------HHHHHHH----HHHcC-CCcCCcCCCCCCHHHH
Confidence 656655544 34457889999999999997532 3344444 44444 4556778899999999
Q ss_pred HHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCc
Q 044420 245 AAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSR 324 (545)
Q Consensus 245 A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 324 (545)
|++.|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||+|+|.. ++
T Consensus 254 A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~~~~~~~g~tal~~a~~----~~ 324 (351)
T 3utm_A 254 AAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQMGNE----AV 324 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHSCH----HH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCChhhhhhH----HH
Confidence 9999999999999999999 999999999999999999999999999999999 77899999999999943 33
Q ss_pred cccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhh
Q 044420 325 VSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 325 ~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~ 371 (545)
+++|.+ .......++.+++..|+++
T Consensus 325 ~~~l~~----------------------~~~~~~~~~~~~l~~A~~~ 349 (351)
T 3utm_A 325 QQILSE----------------------STPMRTSDVDYRLLEASKA 349 (351)
T ss_dssp HHHHHH----------------------C------------------
T ss_pred HHHHHh----------------------ccccccCcceeehhhhhcc
Confidence 333321 1234566777888877664
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.5e-41 Score=323.05 Aligned_cols=226 Identities=20% Similarity=0.180 Sum_probs=164.3
Q ss_pred cccccCCHHhHHHHHcC-------------ChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 044420 4 NVYLNICVPLQKAALKG-------------NWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~ 70 (545)
..+.+|+||||+|+..| +.++++.|++ .+ .+++...|..|+||||+|+..|+.+++++|++ .
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~--~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ 79 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--A 79 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH--T
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH--cc-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH--c
Confidence 34567999999999977 8899999998 56 66665678889999999999999999999998 7
Q ss_pred CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 71 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
|++++.+|..|.||||+|+..|+.+++++|+++++...+.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 151 (253)
T 1yyh_A 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-------- 151 (253)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--------
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--------
Confidence 889999999999999999999999999999998873347888899999999999999999999988877521
Q ss_pred hHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchh
Q 044420 151 ALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSE 230 (545)
Q Consensus 151 ~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 230 (545)
.
T Consensus 152 ---------------------------~---------------------------------------------------- 152 (253)
T 1yyh_A 152 ---------------------------A---------------------------------------------------- 152 (253)
T ss_dssp ---------------------------C----------------------------------------------------
T ss_pred ---------------------------C----------------------------------------------------
Confidence 1
Q ss_pred hhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCC
Q 044420 231 FTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQN 310 (545)
Q Consensus 231 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~ 310 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+
T Consensus 153 ---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~ 224 (253)
T 1yyh_A 153 ---VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDR 224 (253)
T ss_dssp ---BCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTCC
T ss_pred ---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----ccccccCCC
Confidence 224567888888888888899999999888 888889999999999999999999999999888 677889999
Q ss_pred ChhhhhccCCCCCcccccc
Q 044420 311 NMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 311 TpLh~A~~~~~~~~~~~L~ 329 (545)
||||+|++.|+.+++++|.
T Consensus 225 tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 225 LPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp CHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH
Confidence 9999999999988888774
No 14
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=6.5e-42 Score=346.10 Aligned_cols=276 Identities=17% Similarity=0.162 Sum_probs=203.9
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCC----Cc----------------hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNED----PR----------------SILCAGIAKGYETLLHLAAGARQTGFVEELLKL 68 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~----~~----------------~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~ 68 (545)
-+.+|+.|+..|+.+.++.++++.. ++ .......+..|+||||+|+..++ +++++|++
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~- 114 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITR- 114 (373)
T ss_dssp ---------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST-
T ss_pred cccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhcc-
Confidence 4556777777777777776664110 00 01123567889999999999665 77777754
Q ss_pred CCCccccccc-CCCCcHHHHHHHhCCHHHHHHHH--------HcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHccc
Q 044420 69 MKPEDLTLQD-RNGNTAFCFAVAAGSIHIAKIML--------KKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAK 139 (545)
Q Consensus 69 ~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 139 (545)
.+++.+| ..|+||||+|+..|+.++++.|+ +.|+++ +.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus 115 ---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 190 (373)
T 2fo1_E 115 ---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190 (373)
T ss_dssp ---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCC
Confidence 5788888 78999999999999998877776 789997 8999999999999999999999999999999
Q ss_pred CCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCC---CcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHH
Q 044420 140 AKDNLTPEDQNALFFTCISTDLHDLALKLLEDHS---GLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLV 216 (545)
Q Consensus 140 ~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~---~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (545)
+++..+..|.||||+|+..+. .+ +.++|.+.+ .+++..|.+|.||||+|+..+...
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~-~~-~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~------------------- 249 (373)
T 2fo1_E 191 DPTIYNKSERSALHQAAANRD-FG-MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD------------------- 249 (373)
T ss_dssp CSCCCCTTCCCHHHHHHHTTC-HH-HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT-------------------
T ss_pred CCcccCCCCCCHHHHHHHCCC-HH-HHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcc-------------------
Confidence 999999999999999998765 34 455666655 788999999999999999887321
Q ss_pred HHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc--------ccccCCCcHHHHHHHhCchHHH
Q 044420 217 KSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH--------ELDDNNRSIFHIAVLHRHANIF 288 (545)
Q Consensus 217 ~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--------~~d~~G~t~Lh~A~~~~~~~iv 288 (545)
+.+++++|+++|++ ++ .+|..|+||||+|+..|+.+++
T Consensus 250 ---------------------------------~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v 295 (373)
T 2fo1_E 250 ---------------------------------QVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295 (373)
T ss_dssp ---------------------------------HHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred ---------------------------------hHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHH
Confidence 34567777777777 44 3788999999999999999999
Q ss_pred HHHHhhc-cchhhhhhcccCCCCChhhhhccCCCCCccccccc-------------hhHHhHHHHhHHHHHhhhh
Q 044420 289 NLIYEIG-FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG-------------AALQMHRELLWFKEVEKIV 349 (545)
Q Consensus 289 ~~Ll~~g-~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~-------------~~~~~~~~l~~~~~v~~l~ 349 (545)
++|++++ ++ +|.+|.+|+||||+|+..|+.+++++|.+ .+++.+......+.++.++
T Consensus 296 ~~Ll~~~~~~----~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 296 KYLVGEKGSN----KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp HHHHHHSCCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCCC----ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999987 77 78899999999999999999999999853 3577777777777776665
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.8e-41 Score=325.62 Aligned_cols=250 Identities=18% Similarity=0.102 Sum_probs=182.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCc
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMT 117 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 117 (545)
.+|.+|+||||+|++.|+.++|++|++ .+++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 568889999999999999999999998 5665 7888888999999999999999999999999887 788889999
Q ss_pred HHHHHHHcCCHHHHHHHHHcccCCccC-------------CCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCc
Q 044420 118 PLYMAAVLAQRDMALYLYDDAKAKDNL-------------TPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184 (545)
Q Consensus 118 pL~~A~~~g~~~iv~~Ll~~~~~~~~~-------------~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~ 184 (545)
|||+|+..|+.+++++|++++++.... ...+.++++.++..... ......+...+.+++.+|..|.
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE-NEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------CCCGGGGTTCCCTTSC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc-hhhhhhhhhhhhcCCCcCCCCc
Confidence 999999999999999999888753221 12234455555544332 3445566667888999999999
Q ss_pred hHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc-CCChHHHHHHhcCcHHHHHHHHHHCCC
Q 044420 185 TALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR-KPSHLLFDAAELGNFEFLAELICSYPD 263 (545)
Q Consensus 185 tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 263 (545)
||||+|+..|+. ++++.|++... +++..+. .|.||||+|++.|+.+++++|+++|++
T Consensus 160 t~L~~A~~~g~~-----------------~~v~~Ll~~g~-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 160 TPLHVAVIHKDA-----------------EMVRLLRDAGA-----DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp CHHHHHHHTTCH-----------------HHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCH-----------------HHHHHHHHcCC-----CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999954 55555555443 3334443 499999999999999999999999999
Q ss_pred cccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCC
Q 044420 264 LVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321 (545)
Q Consensus 264 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~ 321 (545)
++.+|..|+||||+|+.+++.+++++|+++|++ ++.+|.+|.|||++|.....
T Consensus 218 -~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 218 -PTARMYGGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp -TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC----CCCCC---------------
T ss_pred -CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC----cCcCCCcccccccccCCccc
Confidence 999999999999999999999999999999999 78899999999999988653
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.5e-41 Score=339.19 Aligned_cols=265 Identities=16% Similarity=0.098 Sum_probs=196.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
..|.+|.||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.++|++|+++|++. .+.+|.||||
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~ 89 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIH 89 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHH
Confidence 456667777777777777777777776 56777777777777777777777777777777777643 2345677777
Q ss_pred HHHHcCCHHHHHHHHHc----ccCCcc-----------------CCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccccc
Q 044420 121 MAAVLAQRDMALYLYDD----AKAKDN-----------------LTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~----~~~~~~-----------------~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~ 179 (545)
+|+..|+.+++++|+++ |.+++. .+..|.||||+|+..+.....+.++|.+.|++++.+
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 77777777777777776 554443 455666777777666531234445555557778888
Q ss_pred CCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH
Q 044420 180 DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC 259 (545)
Q Consensus 180 d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 259 (545)
|..|.||||+|+..|+. ++++.|++...+....+++..|..|.||||+|+..|+.+++++|++
T Consensus 170 d~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNR-----------------EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232 (364)
T ss_dssp CTTSCCHHHHHHHTTCH-----------------HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCH-----------------HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 89999999999999844 5666666655543334467778899999999999999999999999
Q ss_pred HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhh--------hhcccCCCCChhhhhccCCCCCccccc
Q 044420 260 SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM--------ATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 260 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~--------~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
+|++ ++.+|.+|+||||+|+..|+.+++++|+++|++.... ....+..|+|||+.|+..++.+.+..|
T Consensus 233 ~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~l 308 (364)
T 3ljn_A 233 MGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308 (364)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHH
T ss_pred cCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHH
Confidence 9999 8999999999999999999999999999999875320 112678899999999999876665554
No 17
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=323.72 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=185.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcC---------CCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCC
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLM---------KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRG 112 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 112 (545)
-...|.|+||+|+..|+.+.+..++... -...++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence 4578999999999999987777765521 02235778999999999999999999999999999997 8899
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHh
Q 044420 113 GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLAR 192 (545)
Q Consensus 113 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~ 192 (545)
.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----------------------------------~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-----------------------------------NGVTADWHTPLFNACV 134 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-----------------------------------SCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-----------------------------------CCCCCCCCCHHHHHHH
Confidence 99999999999999999999999998763 4556677777777777
Q ss_pred CCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCC
Q 044420 193 KPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNN 272 (545)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G 272 (545)
.|+. ++++.|++...+.+ .+.+|.||||+|+..|+.+++++|++++++ ++.+|.+|
T Consensus 135 ~~~~-----------------~~v~~Ll~~g~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g 190 (285)
T 3d9h_A 135 SGSW-----------------DCVNLLLQHGASVQ------PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHL 190 (285)
T ss_dssp HTCH-----------------HHHHHHHHTTCCSS------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTT
T ss_pred cCHH-----------------HHHHHHHHCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCC
Confidence 7643 44444444332222 235599999999999999999999999999 89999999
Q ss_pred CcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCc
Q 044420 273 RSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPT 352 (545)
Q Consensus 273 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~ 352 (545)
+||||+|+.+|+.+++++|+++|++ ++ .|..|+||||+|++.++.+++++|.+ .++
T Consensus 191 ~t~L~~A~~~~~~~~v~~Ll~~ga~----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------~ga 246 (285)
T 3d9h_A 191 GTPLYLACENQQRACVKKLLESGAD----VN-QGKGQDSPLHAVVRTASEELACLLMD-------------------FGA 246 (285)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHTTCC----TT-CCBTTBCHHHHHHHTTCHHHHHHHHH-------------------TTC
T ss_pred CCHHHHHHHcCcHHHHHHHHHCCCC----CC-CCCCCCCHHHHHHHcCCHHHHHHHHH-------------------CCC
Confidence 9999999999999999999999998 55 48999999999999999998887743 378
Q ss_pred cccccCCCCCChhhhhHhh
Q 044420 353 FREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 353 ~~~~~n~~G~Tpl~~a~~~ 371 (545)
+++.+|.+|+||+|+|.++
T Consensus 247 d~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 247 DTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp CTTCCCTTSCCGGGGSCTT
T ss_pred CCCCcCCCCCCHHHHhcCc
Confidence 8999999999999999843
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.7e-40 Score=311.56 Aligned_cols=226 Identities=19% Similarity=0.150 Sum_probs=163.6
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcC--CCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCC
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGN--EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGN 82 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 82 (545)
.+.+|+||||+||+.|+.+++++|++. ..+ .+++ ..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG-RELD-IYNNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHGQ 80 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT-CCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC-cccccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCC
Confidence 345566666666666666666666640 022 2332 455666666666666666666666666 5666666666666
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCc----ccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 83 TAFCFAVAAGSIHIAKIMLKKNE----RLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 83 TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
||||+|+..|+.+++++|++.++ ++ +..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------------- 143 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADID---------------- 143 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc----------------
Confidence 66666666666666666666665 43 5566666666666666666666666666655411
Q ss_pred cCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc-cC
Q 044420 159 TDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI-RK 237 (545)
Q Consensus 159 ~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~ 237 (545)
..+ ..
T Consensus 144 --------------------------------------------------------------------------~~~~~~ 149 (241)
T 1k1a_A 144 --------------------------------------------------------------------------AVDIKS 149 (241)
T ss_dssp --------------------------------------------------------------------------CCCTTT
T ss_pred --------------------------------------------------------------------------cccccC
Confidence 112 45
Q ss_pred CChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhc
Q 044420 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAA 317 (545)
Q Consensus 238 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~ 317 (545)
|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVAR 224 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCTTTTCS
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCcCCCCCCHHHHHH
Confidence 78999999999999999999999999 899999999999999999999999999999999 7889999999999999
Q ss_pred cCCCCCccccccc
Q 044420 318 KSPHPSRVSIVSG 330 (545)
Q Consensus 318 ~~~~~~~~~~L~~ 330 (545)
..|+.++++.|.+
T Consensus 225 ~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 225 SRRVIDILRGKAT 237 (241)
T ss_dssp SHHHHHHHTC---
T ss_pred hcCcHHHHhhhcc
Confidence 9999999888753
No 19
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=320.36 Aligned_cols=217 Identities=14% Similarity=0.187 Sum_probs=167.0
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhh-------hhccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCcccc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSIL-------CAGIAKGYETLLHLAAGARQT-GFVEELLKLMKPEDLT 75 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-------~~~~~~~g~T~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~ 75 (545)
..+.++.+||+.||+.|+.++|++|++ .+ ... .+..+..|.||||.|+..++. +++++|++ .|+++|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~--~~-~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~--~Gadvn 80 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE--WT-EEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA--SGLGVN 80 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT--CC-------------------------------------------CCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH--CC-CcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHH--CCCCCC
Confidence 455668899999999999999999998 33 221 235677899999999998876 48899998 899999
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHH
Q 044420 76 LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 76 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~a 155 (545)
.+|.+|+||||+|+..|+.++|++|++.|+++ +.++.+|.||+|+|+..++.+++++|+++|++++
T Consensus 81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n------------- 146 (269)
T 4b93_B 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN------------- 146 (269)
T ss_dssp CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-------------
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCC-------------
Confidence 99999999999999999999999999999997 8899999999999999999999999999887522
Q ss_pred HHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc
Q 044420 156 CISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI 235 (545)
Q Consensus 156 a~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 235 (545)
.+ |
T Consensus 147 ----------------------~~-------------------------------------------------------d 149 (269)
T 4b93_B 147 ----------------------KK-------------------------------------------------------D 149 (269)
T ss_dssp ----------------------CC-------------------------------------------------------C
T ss_pred ----------------------CC-------------------------------------------------------C
Confidence 22 2
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhh
Q 044420 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHL 315 (545)
Q Consensus 236 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~ 315 (545)
..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.++|++|+++|++ +|.+|.+|+||||+
T Consensus 150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~ 224 (269)
T 4b93_B 150 LSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGAS----VQVLNKRQRTAVDC 224 (269)
T ss_dssp TTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSGGG
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHH
Confidence 4567788888888888999999999999 999999999999999999999999999999999 78899999999999
Q ss_pred hccCCC
Q 044420 316 AAKSPH 321 (545)
Q Consensus 316 A~~~~~ 321 (545)
|+++++
T Consensus 225 A~~~~~ 230 (269)
T 4b93_B 225 AEQNSK 230 (269)
T ss_dssp SCTTCH
T ss_pred HHhCCc
Confidence 998764
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.1e-40 Score=307.99 Aligned_cols=222 Identities=20% Similarity=0.235 Sum_probs=181.5
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..+.+|||.||+.|+.+.++.+++ ..+ .. .+..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~-~~~-~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERIL-ADK-SL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHH-HCG-GG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHH-hch-hh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHH--hCCCCCCcCCCCCCHHH
Confidence 357899999999999999999998 444 44 44788999999999999999999999999 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLAL 166 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~ 166 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------ 133 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD------------------------ 133 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------------
T ss_pred HHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------------
Confidence 999999999999999999997 8899999999999999999999999999887522
Q ss_pred HHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHH
Q 044420 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAA 246 (545)
Q Consensus 167 ~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~ 246 (545)
.+| ..|.||||+|+
T Consensus 134 -----------~~~-------------------------------------------------------~~g~t~L~~A~ 147 (231)
T 3aji_A 134 -----------AKD-------------------------------------------------------HYDATAMHRAA 147 (231)
T ss_dssp -----------CCC-------------------------------------------------------TTSCCHHHHHH
T ss_pred -----------CcC-------------------------------------------------------CCCCcHHHHHH
Confidence 222 34566666677
Q ss_pred hcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccc
Q 044420 247 ELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 247 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.++++
T Consensus 148 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~~ 222 (231)
T 3aji_A 148 AKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS----IYIENKEEKTPLQVAKGGLGLILKR 222 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHhhHHHHHHH
Confidence 77777777777777777 677777777777777777777777777777776 5667777777777777766666666
Q ss_pred ccc
Q 044420 327 IVS 329 (545)
Q Consensus 327 ~L~ 329 (545)
+|.
T Consensus 223 lL~ 225 (231)
T 3aji_A 223 LAE 225 (231)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.2e-39 Score=306.22 Aligned_cols=218 Identities=18% Similarity=0.175 Sum_probs=137.1
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
.|.+|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHL 83 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHH--cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence 34445555555555555555555554 44445554555555555555555555555555555443 4444445555555
Q ss_pred HHHcCCHHHHHHHHHccc-CCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 122 AAVLAQRDMALYLYDDAK-AKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
|+..|+.+++++|++++. + ++..|..|.||||+|+..++.
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~-----------------------------------~~~~~~~g~t~L~~A~~~~~~---- 124 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMD-----------------------------------VNCQDDGGWTPMIWATEYKHV---- 124 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCC-----------------------------------TTCCCTTSCCHHHHHHHTTCH----
T ss_pred HHHcCCHHHHHHHHhCCCCC-----------------------------------cccCCCCCCCHHHHHHHcCCH----
Confidence 555555555555554442 2 122233333344444333321
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~ 280 (545)
+++ +.+++.+ .+.+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 125 -------------~~~----~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~ 185 (237)
T 3b7b_A 125 -------------DLV----KLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAA 185 (237)
T ss_dssp -------------HHH----HHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHH
T ss_pred -------------HHH----HHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 111 1122222 22233446778999999999999999999999999 8999999999999999
Q ss_pred HhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCc
Q 044420 281 LHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSR 324 (545)
Q Consensus 281 ~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 324 (545)
..++.+++++|+++|++ ++.+|.+|+||||+|+..++.+.
T Consensus 186 ~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 186 RENRYDCVVLFLSRDSD----VTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HTTCHHHHHHHHTTTCC----TTCCCTTSCCHHHHSCTTCHHHH
T ss_pred HhCCHhHHHHHHHcCCC----CCccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999 78899999999999999987643
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.8e-39 Score=300.21 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=183.0
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--ccccc-ccCCCCcHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP--EDLTL-QDRNGNTAF 85 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~-~d~~g~TpL 85 (545)
|+||||.||+.|+.++++.|++ .+ .......|..|+||||+|+..|+.+++++|++ .+ .+++. .|..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~--~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH--SK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH--HC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCCGGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHh--cC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHh--ccccccccccCCCCCCCHH
Confidence 6899999999999999999998 44 45554678899999999999999999999999 56 66666 788999999
Q ss_pred HHHHHhCCHHHHHHHHHcC--cccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 86 CFAVAAGSIHIAKIMLKKN--ERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
|+|+..|+.+++++|+++| +++ +.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--------------------- 134 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--------------------- 134 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc---------------------
Confidence 9999999999999999998 776 7888999999999999999999999998887521
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
. .+..|.||||
T Consensus 135 --------------~-------------------------------------------------------~~~~g~t~L~ 145 (228)
T 2dzn_A 135 --------------I-------------------------------------------------------KDKFNQIPLH 145 (228)
T ss_dssp --------------C-------------------------------------------------------CCTTSCCHHH
T ss_pred --------------c-------------------------------------------------------cCCCCCCHHH
Confidence 1 1245688888
Q ss_pred HHHhcCcHHHHHHHHHHC-CCcccccccCCCcHHHHHHHhCchHHHHHHH-hhccchhhhhhcccCCCCChhhhhccC
Q 044420 244 DAAELGNFEFLAELICSY-PDLVHELDDNNRSIFHIAVLHRHANIFNLIY-EIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
+|+..|+.+++++|++.+ .+ ++.+|..|+||||+|+..++.+++++|+ +.|++ ++.+|.+|+||||+|++.
T Consensus 146 ~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~----~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 146 RAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCBCTTSCBGGGGCSST
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC----CCccCCCCCcHHHHHHHH
Confidence 888889999999999999 66 8999999999999999999999999999 88998 788999999999999875
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.4e-39 Score=303.61 Aligned_cols=221 Identities=18% Similarity=0.236 Sum_probs=197.6
Q ss_pred cccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhh
Q 044420 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNA 151 (545)
Q Consensus 72 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 151 (545)
.+++.+|.+|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 69 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL----------- 69 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----------
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----------
Confidence 467889999999999999999999999999999997 88999999999999999999999999998875
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhh
Q 044420 152 LFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEF 231 (545)
Q Consensus 152 l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 231 (545)
++.++..|.||||+|+..|+. .+++.+++.++.+.
T Consensus 70 ------------------------~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~~~~~~ 104 (237)
T 3b7b_A 70 ------------------------VDPKDAEGSTCLHLAAKKGHY---------------------EVVQYLLSNGQMDV 104 (237)
T ss_dssp ------------------------CCCCCTTSCCHHHHHHHTTCH---------------------HHHHHHHTTTCCCT
T ss_pred ------------------------CCCCCCCCCcHHHHHHHcCCH---------------------HHHHHHHhCCCCCc
Confidence 345667788888888888854 23566666665666
Q ss_pred hhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCC
Q 044420 232 TDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNN 311 (545)
Q Consensus 232 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~T 311 (545)
+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus 105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t 179 (237)
T 3b7b_A 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCD----LHAVNIHGDS 179 (237)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC----TTCCCTTCCC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCcCCCCCC
Confidence 77788999999999999999999999999999 899999999999999999999999999999998 7889999999
Q ss_pred hhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 312 MLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 312 pLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
|||+|++.++.+++++|.+ .+++++.+|++|+||+|+|++..+
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~-------------------~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 180 PLHIAARENRYDCVVLFLS-------------------RDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHT-------------------TTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHHHHHHhCCHhHHHHHHH-------------------cCCCCCccCCCCCCHHHHHHHHHH
Confidence 9999999999988877743 378899999999999999987654
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.6e-40 Score=321.20 Aligned_cols=264 Identities=17% Similarity=0.139 Sum_probs=219.5
Q ss_pred HHHHcCChHHHHHhhcCCCCchhh-------hhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 15 KAALKGNWPTAKHLLGNEDPRSIL-------CAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 15 ~Aa~~g~~~~v~~Ll~~~~~~~~~-------~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.+++.|..+.++.++. ... ... ....+..|.||||.||..|+.++|++|++ .|++++.+|..|.||||+
T Consensus 4 ~~a~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 79 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIG-SET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQ 79 (299)
T ss_dssp HHHHHHHHHHHHHHHH-TTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHH
T ss_pred hHHHHHHHHHHHHHHc-ccc-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHH
Confidence 5778888888888887 221 100 11234467899999999999999999999 789999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..+ ..+.+..
T Consensus 80 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~ 157 (299)
T 1s70_B 80 ACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-MEELLQN 157 (299)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc-hHHHHHH
Confidence 99999999999999999997 889999999999999999999999999999998888999999999987654 4467777
Q ss_pred HHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh
Q 044420 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE 247 (545)
Q Consensus 168 lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~ 247 (545)
++...+.+++..+..+.++++..+ ..++..+.......+..|.||||+|+.
T Consensus 158 ll~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~l~~~~~~~~~~~~~g~t~L~~A~~ 208 (299)
T 1s70_B 158 EVNRQGVDIEAARKEEERIMLRDA-----------------------------RQWLNSGHINDVRHAKSGGTALHVAAA 208 (299)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHH-----------------------------HHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred HHhhcCCCchhhhhhhhhHHHHHH-----------------------------HHHHhccCcchhhhcCCCCCHHHHHHH
Confidence 787777776655554444443321 112222223333455789999999999
Q ss_pred cCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhcc
Q 044420 248 LGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK 318 (545)
Q Consensus 248 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~ 318 (545)
.|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||||+|++
T Consensus 209 ~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 209 KGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD----MEAVNKVGQTAFDVADE 274 (299)
T ss_dssp HTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTTTSCCS
T ss_pred CCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999 78899999999999976
No 25
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.1e-39 Score=326.94 Aligned_cols=260 Identities=13% Similarity=-0.013 Sum_probs=225.6
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|.||||+||..|+.++|++|++ .+ .+++ ..|..|.||||+|+..|+.++|++|++ .+++++ +.+|.|
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g-~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~--~~~g~t 86 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIE--TG-VSPT-IQNRFGCTALHLACKFGCVDTAKYLAS--VGEVHS--LWHGQK 86 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHH--HCCCCC--CBTTBC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHH--CCCCcc--ccCCCC
Confidence 356679999999999999999999999 66 6665 789999999999999999999999999 677544 457999
Q ss_pred HHHHHHHhCCHHHHHHHHHc----CcccccC-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcccC
Q 044420 84 AFCFAVAAGSIHIAKIMLKK----NERLLTM-----------------RGGENMTPLYMAAVLA--QRDMALYLYDDAKA 140 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~ 140 (545)
|||+|+..|+.+++++|++. |+++ +. +|..|.||||+|+..| +.+++++|+++|++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 99999999999999999998 6664 44 7889999999999999 99999999999999
Q ss_pred CccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCc-----ccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHH
Q 044420 141 KDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGL-----AVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQL 215 (545)
Q Consensus 141 ~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~-----~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (545)
++..+..|.||||+|+..+.. .+.++|.+.+.+ ++.+|..|.||||+|+..|+. +
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------------~- 225 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNR--EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE-----------------D- 225 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH-----------------H-
T ss_pred CcccCCCCCCHHHHHHHcCCH--HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH-----------------H-
Confidence 999999999999999987653 555666666666 999999999999999999965 3
Q ss_pred HHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc------------ccccCCCcHHHHHHHhC
Q 044420 216 VKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH------------ELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 216 ~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~------------~~d~~G~t~Lh~A~~~~ 283 (545)
+++.|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++ ..+..|+||+++|+..+
T Consensus 226 ---~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 226 ---VAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV-FLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp ---HHHHHHTTT-CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH-HHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred ---HHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc-hhhhcCcccCcccccccccccccchhhhhcc
Confidence 355566665 56677889999999999999999999999999876 32 25778999999999999
Q ss_pred chHHHHHHHhhccc
Q 044420 284 HANIFNLIYEIGFT 297 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~ 297 (545)
+.+.+..|++.+.+
T Consensus 301 ~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 301 SKQEVLQLLQEKLD 314 (364)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99888888888766
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6.5e-39 Score=311.12 Aligned_cols=253 Identities=15% Similarity=0.094 Sum_probs=186.9
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHcCccc--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhh
Q 044420 74 LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL--LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNA 151 (545)
Q Consensus 74 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 151 (545)
++.+|.+|+||||+|+..|+.++|++|+++|++. .+.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4678999999999999999999999999998872 38899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCcccc-------------cCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHH
Q 044420 152 LFFTCISTDLHDLALKLLEDHSGLAVA-------------RDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKS 218 (545)
Q Consensus 152 l~~aa~~~~~~~~~~~lL~~~~~~~~~-------------~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (545)
||+|+..+.. .+.++|.+.+..... ....+.++++.++..+....
T Consensus 82 L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 139 (282)
T 1oy3_D 82 LHLACRVRAH--TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE-------------------- 139 (282)
T ss_dssp HHHHTTTTCH--HHHHHHSSSCCSSCCCC---------------------------------------------------
T ss_pred HHHHHHcCCc--chhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh--------------------
Confidence 9999987653 455666665544321 22344556665554442210
Q ss_pred HHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccC-CCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 219 LWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDN-NRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 219 l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
....+.. ...+.+..+..|.||||+|+..|+.+++++|+++|++ ++.++.. |+||||+|+.+|+.+++++|+++|++
T Consensus 140 ~~~~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 140 EEPRDED-WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp ----CCC-GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hhhhhhh-hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1111111 2255667788999999999999999999999999999 8888854 99999999999999999999999999
Q ss_pred hhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 298 KELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 298 ~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
++.+|..|+||||+|+..++.+++++|.+ .|++++.+|.+|+||+++|.....
T Consensus 218 ----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 218 ----PTARMYGGRTPLGSALLRPNPILARLLRA-------------------HGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp ----TTCCCTTSCCHHHHHHTSSCHHHHHHHHH-------------------TTCCCCCCC---------------
T ss_pred ----CcccccCCCCHHHHHHHcCCcHHHHHHHH-------------------cCCCcCcCCCcccccccccCCccc
Confidence 78899999999999999999999888743 388999999999999999986554
No 27
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2e-39 Score=309.81 Aligned_cols=217 Identities=19% Similarity=0.208 Sum_probs=161.3
Q ss_pred ccCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCccccc-ccCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 044420 41 GIAKGYETLLHLAAGAR-------------QTGFVEELLKLMKPEDLTL-QDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 106 (545)
.+|.+|+||||+|+..| +.+++++|++ .|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH--ccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 67889999999999977 8899999998 6887754 588899999999999999999999999998
Q ss_pred cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchH
Q 044420 107 LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETA 186 (545)
Q Consensus 107 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tp 186 (545)
+ +.+|..|.||||+|+..|+.+++++|+++++. +++
T Consensus 83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------------------------~~~--------- 118 (253)
T 1yyh_A 83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRAT----------------------------------DLD--------- 118 (253)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS----------------------------------CTT---------
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------------------Ccc---------
Confidence 7 88899999999999999999999999988752 011
Q ss_pred HHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc
Q 044420 187 LHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH 266 (545)
Q Consensus 187 Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 266 (545)
..+..|.||||+|+..|+.+++++|+++|++ ++
T Consensus 119 ----------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 151 (253)
T 1yyh_A 119 ----------------------------------------------ARMHDGTTPLILAARLAVEGMLEDLINSHAD-VN 151 (253)
T ss_dssp ----------------------------------------------CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TT
T ss_pred ----------------------------------------------ccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CC
Confidence 1225678888888888899999999999999 99
Q ss_pred ccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHh
Q 044420 267 ELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVE 346 (545)
Q Consensus 267 ~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~ 346 (545)
.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|.+
T Consensus 152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~---------------- 211 (253)
T 1yyh_A 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNREETPLFLAAREGSYETAKVLLD---------------- 211 (253)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHCCCHHHHHHHHH----------------
Confidence 9999999999999999999999999999999 78899999999999999999998888743
Q ss_pred hhhcCccccccCCCCCChhhhhHhhhh
Q 044420 347 KIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 347 ~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
.+++++.+|..|+||+|+|+++..
T Consensus 212 ---~ga~~~~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 212 ---HFANRDITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp ---TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred ---cCCCccccccCCCCHHHHHHHcCC
Confidence 378899999999999999987654
No 28
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3e-38 Score=299.15 Aligned_cols=221 Identities=16% Similarity=0.116 Sum_probs=194.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKL--MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 118 (545)
.+|.+|+||||+||+.|+.+++++|++. ..+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCH
Confidence 6789999999999999999999999961 158899999999999999999999999999999999997 8899999999
Q ss_pred HHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcc
Q 044420 119 LYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFA 198 (545)
Q Consensus 119 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 198 (545)
||+|+..|+.+++++|+++++.. +
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~-------------------------------~------------------------- 106 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPG-------------------------------T------------------------- 106 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTT-------------------------------S-------------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCc-------------------------------c-------------------------
Confidence 99999999999999999988630 0
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccc-cCCCcHHH
Q 044420 199 SRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELD-DNNRSIFH 277 (545)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh 277 (545)
.+.+..+..|.||||+|+..|+.+++++|+++|++ ++..| ..|+||||
T Consensus 107 ------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 107 ------------------------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLI 155 (241)
T ss_dssp ------------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHH
T ss_pred ------------------------------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHH
Confidence 01112236678999999999999999999999999 78888 88999999
Q ss_pred HHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCcccccc
Q 044420 278 IAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMK 357 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~ 357 (545)
+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|.+ .+++++.+
T Consensus 156 ~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~ 212 (241)
T 1k1a_A 156 HAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGRGLLPLVRTLVR-------------------SGADSSLK 212 (241)
T ss_dssp HHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-------------------TTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-------------------cCCCCCCc
Confidence 99999999999999999998 78899999999999999999998887743 37889999
Q ss_pred CCCCCChhhhhHhhh
Q 044420 358 NSEGKTPRELFSIEH 372 (545)
Q Consensus 358 n~~G~Tpl~~a~~~~ 372 (545)
|.+|+||+|+|.+..
T Consensus 213 ~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 213 NCHNDTPLMVARSRR 227 (241)
T ss_dssp CTTSCCTTTTCSSHH
T ss_pred CCCCCCHHHHHHhcC
Confidence 999999999998654
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.2e-38 Score=293.97 Aligned_cols=213 Identities=19% Similarity=0.172 Sum_probs=184.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCCCcHHHHHHHhCCHHHHHHHHHcC--cccccCCCCCCCcHHHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDL-TLQDRNGNTAFCFAVAAGSIHIAKIMLKKN--ERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A 122 (545)
|+||||.|++.|+.+++++|++ .+.++ +.+|..|.||||+|+..|+.+++++|+++| +++....+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH--HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHh--cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 7899999999999999999999 45554 458999999999999999999999999999 665333889999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+..|+.+++++|+++|.+ .+++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~---------------------------------~~~~------------------------- 101 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLK---------------------------------PDLN------------------------- 101 (228)
T ss_dssp HHHCCHHHHHHHHSSSSC---------------------------------CCTT-------------------------
T ss_pred HHcCCHHHHHHHHhCCCC---------------------------------cccc-------------------------
Confidence 999999999999998742 0111
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus 102 ------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 150 (228)
T 2dzn_A 102 ------------------------------KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASV 150 (228)
T ss_dssp ------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHT
T ss_pred ------------------------------cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 1235678888888899999999999999999 899999999999999999
Q ss_pred CchHHHHHHHhhc-cchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCC
Q 044420 283 RHANIFNLIYEIG-FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEG 361 (545)
Q Consensus 283 ~~~~iv~~Ll~~g-~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G 361 (545)
|+.+++++|+++| .+ +|.+|..|+||||+|+..++.+++++|.+ ..|++++.+|.+|
T Consensus 151 ~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------------------~~ga~~~~~~~~g 208 (228)
T 2dzn_A 151 GSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHGDAAVLLVE------------------KYGAEYDLVDNKG 208 (228)
T ss_dssp TCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------HHCCCSCCBCTTS
T ss_pred CCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCHHHHHHHHH------------------hcCCCCCccCCCC
Confidence 9999999999999 77 78899999999999999999998887741 1278899999999
Q ss_pred CChhhhhHhh
Q 044420 362 KTPRELFSIE 371 (545)
Q Consensus 362 ~Tpl~~a~~~ 371 (545)
+||+++|.++
T Consensus 209 ~t~l~~A~~~ 218 (228)
T 2dzn_A 209 AKAEDVALNE 218 (228)
T ss_dssp CBGGGGCSST
T ss_pred CcHHHHHHHH
Confidence 9999999754
No 30
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.6e-37 Score=290.77 Aligned_cols=216 Identities=17% Similarity=0.164 Sum_probs=193.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
+..++||||.|++.|+.+.++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 45688999999999999999999985 56668889999999999999999999999999999997 88999999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+..|+.+++++|+++|++++ .
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~-----------------------------------~------------------------ 101 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVN-----------------------------------A------------------------ 101 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTT-----------------------------------C------------------------
T ss_pred HHcCHHHHHHHHHHcCCCCC-----------------------------------C------------------------
Confidence 99999999999999887521 1
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus 102 -------------------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 149 (231)
T 3aji_A 102 -------------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAK 149 (231)
T ss_dssp -------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred -------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 124568888888888999999999999999 899999999999999999
Q ss_pred CchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCC
Q 044420 283 RHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGK 362 (545)
Q Consensus 283 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~ 362 (545)
|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.+ .+++++.+|.+|+
T Consensus 150 ~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~ 206 (231)
T 3aji_A 150 GNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEEAKFLVT-------------------QGASIYIENKEEK 206 (231)
T ss_dssp TCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-------------------TTCCSCCCCTTSC
T ss_pred CCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCCCHHHHHHHHH-------------------CCCCCCCCCCCCC
Confidence 999999999999998 78899999999999999999998887743 3788999999999
Q ss_pred ChhhhhHhhhhh
Q 044420 363 TPRELFSIEHSS 374 (545)
Q Consensus 363 Tpl~~a~~~~~~ 374 (545)
||+++|.+.+..
T Consensus 207 t~l~~A~~~~~~ 218 (231)
T 3aji_A 207 TPLQVAKGGLGL 218 (231)
T ss_dssp CHHHHSCHHHHH
T ss_pred CHHHHHHhhHHH
Confidence 999999876543
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-37 Score=301.89 Aligned_cols=234 Identities=9% Similarity=-0.014 Sum_probs=191.9
Q ss_pred HHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHH
Q 044420 17 ALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHI 96 (545)
Q Consensus 17 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~i 96 (545)
++..+.+.++.++. .. ++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+| |.||||+|+..|+.++
T Consensus 7 i~~~~~~~v~~lL~-~~---~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~--g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 7 INTWKSKQLKSFLS-SK---DT-FKADVHGHSASYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGGCCHHHHHHHHH-ST---TT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTGGGSCCT--TCCHHHHHTTSSSCHH
T ss_pred HHhcCHHHHHHHHH-hC---CC-CccCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCC--CCCHHHHHHHcCCHHH
Confidence 45566666666666 22 23 3789999999999999999999999999 799999884 9999999999999999
Q ss_pred HHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcc
Q 044420 97 AKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLA 176 (545)
Q Consensus 97 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~ 176 (545)
+++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 78 v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------------------------------- 121 (285)
T 3kea_A 78 VKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL----------------------------------- 121 (285)
T ss_dssp HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-----------------------------------
T ss_pred HHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-----------------------------------
Confidence 99999999997 889999999999999999999999999998863
Q ss_pred cccCCCC-chHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc-cCCChHHHHHHhcCcHHHH
Q 044420 177 VARDGNY-ETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI-RKPSHLLFDAAELGNFEFL 254 (545)
Q Consensus 177 ~~~d~~g-~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v 254 (545)
+.+|..| .||||+|+..|+. + +++.+++.++.. .+ ..|.||||+|+..|+.+++
T Consensus 122 ~~~~~~g~~t~L~~A~~~~~~-----------------~----~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 122 MFYGKTGWKTSFYHAVMLNDV-----------------S----IVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp GGCSSSGGGSHHHHHHHTTCH-----------------H----HHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHH
T ss_pred CccCCCCCCCHHHHHHHcCCH-----------------H----HHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHH
Confidence 4555566 5777777776643 2 244444444221 11 2788999999999999999
Q ss_pred HHHHHHCCCcccccccCCCcH-HHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccch
Q 044420 255 AELICSYPDLVHELDDNNRSI-FHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGA 331 (545)
Q Consensus 255 ~~Ll~~~~~~~~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~ 331 (545)
++|+++|++ ++.+|..|+|| ||+|+.+++.+++++|+++|++ ++.+| +.|+..|+.+++++|.+.
T Consensus 178 ~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad----~~~~~-------~~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 178 ILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN----IYSAN-------LENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC----STTTT-------GGGGTTTCHHHHHHHHHH
T ss_pred HHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC----CCCCC-------hhhhhcCCHHHHHHHHHc
Confidence 999999999 89999999998 9999999999999999999998 56666 467888888988888654
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=303.24 Aligned_cols=215 Identities=16% Similarity=0.129 Sum_probs=165.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--------cccccCCCCcHHHHHHHhCCH-HHHHHHHHcCcccccCC
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPED--------LTLQDRNGNTAFCFAVAAGSI-HIAKIMLKKNERLLTMR 111 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~--------~~~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~ 111 (545)
.+|..+.+||+.||+.|+.++|++|++ .+++ ++..|..|.||||.|+..++. ++++.|++.|+++ +.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~ 82 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVT 82 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCT-TCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCc
Confidence 467778899999999999999999998 5543 567788899999999988775 5899999999997 899
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHH
Q 044420 112 GGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLA 191 (545)
Q Consensus 112 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~ 191 (545)
|.+|+||||+|+..|+.+++++|++.|++++ .
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-----------------------------------~------------- 114 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAG-----------------------------------A------------- 114 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-----------------------------------C-------------
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-----------------------------------c-------------
Confidence 9999999999999999999999999887521 1
Q ss_pred hCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccC
Q 044420 192 RKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDN 271 (545)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 271 (545)
.+..|.||+|.|+..++.+++++|++.|++ ++.+|..
T Consensus 115 ------------------------------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~ 151 (269)
T 4b93_B 115 ------------------------------------------RNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLS 151 (269)
T ss_dssp ------------------------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTT
T ss_pred ------------------------------------------cCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCC
Confidence 124568888888889999999999999999 9999999
Q ss_pred CCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcC
Q 044420 272 NRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQP 351 (545)
Q Consensus 272 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~ 351 (545)
|+||||+|+.+|+.+++++|+++|++ +|.+|..|+||||+|+..|+.+++++|.+ .|
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-------------------~G 208 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIEKHVFVVELLLL-------------------HG 208 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-------------------TT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCcHHHHHHHcCCHHHHHHHHH-------------------CC
Confidence 99999999999999999999999999 78899999999999999999999888743 38
Q ss_pred ccccccCCCCCChhhhhHhhh
Q 044420 352 TFREMKNSEGKTPRELFSIEH 372 (545)
Q Consensus 352 ~~~~~~n~~G~Tpl~~a~~~~ 372 (545)
++++.+|.+|+||||+|+++.
T Consensus 209 ad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 209 ASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp CCSCCCCTTSCCSGGGSCTTC
T ss_pred CCCCCcCCCCCCHHHHHHhCC
Confidence 899999999999999998654
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=283.46 Aligned_cols=229 Identities=17% Similarity=0.126 Sum_probs=159.6
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
+..|.||||.|++.|+.+++++|++ .+ .+++ ..+..|.||||+|+..|+.+++++|++ .+.+++..+ ..|.||
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVE--AG-YDVR-QPDKENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNSTP 79 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCBTTTTBCH
T ss_pred ccccchHHHHHHHcCChHHHHHHHH--cC-CCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHH--cCCcchhhcCCcCCCh
Confidence 4456677777777777777777777 44 4444 556677777777777777777777777 566665444 337777
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 80 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~----------------------- 135 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV----------------------- 135 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------
T ss_pred hHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-----------------------
Confidence 77777777777777777777775 666777777777777777777777777766653
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc-CCChHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR-KPSHLLF 243 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~g~tpLh 243 (545)
+.+|.+|.||||+|+..++... +++.+++.+ .+.+..+. .|.||||
T Consensus 136 ------------~~~~~~g~t~l~~a~~~~~~~~--------------------~~~~L~~~~-~~~~~~~~~~g~t~L~ 182 (240)
T 3eu9_A 136 ------------DMMDQNGMTPLMWAAYRTHSVD--------------------PTRLLLTFN-VSVNLGDKYHKNTALH 182 (240)
T ss_dssp ------------TCCCTTSCCHHHHHHHHCCSST--------------------THHHHHHTT-CCTTCCCTTTCCCHHH
T ss_pred ------------cccCCCCCcHHHHHHHhCChHH--------------------HHHHHHhcC-CCcchhhccCCCcHHH
Confidence 4455556666666664443211 133333333 23333344 7889999
Q ss_pred HHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccch
Q 044420 244 DAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++++.+.
T Consensus 183 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 183 WAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 99999999999999999999 8999999999999999999999999999998773
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-36 Score=284.39 Aligned_cols=215 Identities=25% Similarity=0.235 Sum_probs=177.1
Q ss_pred CChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHH
Q 044420 20 GNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKI 99 (545)
Q Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~ 99 (545)
|+.+++++|++ .+ .+++...|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++
T Consensus 2 g~~~~i~~Ll~--~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 2 DAPAVISDFIY--QG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ---CCEETTEE--TT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHH--cC-CCcccccCCCCCchHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 77889999999 66 66665678999999999999999999999999 799999999999999999999999999999
Q ss_pred HHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccccc
Q 044420 100 MLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179 (545)
Q Consensus 100 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~ 179 (545)
|+++++...+.++..|.||||+|+..|+.+++++|+++|+++ +.+
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------------------------~~~ 121 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-----------------------------------NAV 121 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------------------TCB
T ss_pred HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-----------------------------------cCc
Confidence 999998445889999999999999999999999999988763 345
Q ss_pred CCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH
Q 044420 180 DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC 259 (545)
Q Consensus 180 d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 259 (545)
|..|.||||+|+..|+. +++ +.+++.+ .+.+..+..|.||||+|++.|+.+++++|++
T Consensus 122 ~~~g~t~L~~A~~~~~~-----------------~~v----~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 179 (223)
T 2f8y_A 122 DDLGKSALHWAAAVNNV-----------------DAA----VVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLD 179 (223)
T ss_dssp CTTSCBHHHHHHHTTCH-----------------HHH----HHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCH-----------------HHH----HHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 55666666666666643 233 3333333 3444556778888888888888889999999
Q ss_pred HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 260 SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 260 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
+|++ ++.+|..|+||||+|+.+++.+++++|+++|+.
T Consensus 180 ~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 180 HFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp TTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred cCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 8888 888888899999999999999999999888876
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-37 Score=300.42 Aligned_cols=250 Identities=17% Similarity=0.130 Sum_probs=209.4
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||.||..|+.++|+.|++ .+ .+++ ..|..|.||||+||..|+.+++++|++ .|++++.+|..|.||
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g~tp 109 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLE--RG-ADIN-YANVDGLTALHQACIDDNVDMVKFLVE--NGANINQPDNEGWIP 109 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHH--HC-CCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHH--cC-CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCcH
Confidence 45578899999999999999999999 66 6665 788999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc-ccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD-AKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++++.. +.+++..+..+.++++ .
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~---------~ 179 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML---------R 179 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---------H
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH---------H
Confidence 99999999999999999999997 89999999999999999999999988864 4443222222222222 2
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
.+..++..........+..|.||||+|+..|+. + +++.+++.+ .+++..|..|.||||
T Consensus 180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------------~----~v~~Ll~~g-~d~~~~d~~g~tpL~ 237 (299)
T 1s70_B 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-----------------E----VLKLLIQAR-YDVNIKDYDGWTPLH 237 (299)
T ss_dssp HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-----------------H----HHHHHHTTT-CCTTCCCTTCCCHHH
T ss_pred HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH-----------------H----HHHHHHHcC-CCCCCcCCCCCcHHH
Confidence 345666666666777889999999999999965 3 355556555 566778899999999
Q ss_pred HHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 244 DAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|++. ..+.++.+++.
T Consensus 238 ~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 238 AAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999 999999999999999764 45555555544
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=9.5e-38 Score=309.64 Aligned_cols=266 Identities=12% Similarity=0.080 Sum_probs=203.7
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-----------
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQ----------- 77 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~----------- 77 (545)
..+|+| ....++|++|++ .| .+++ ..+..|.|++| |+.++|+.|++ +|++++..
T Consensus 23 ~~~~~~----~~~~dlv~~ll~--~g-a~i~-~~~~~g~~~~~-----g~~~~v~~Ll~--~g~~~~~~~~~~a~~~~~~ 87 (327)
T 1sw6_A 23 TAGPII----TFTHDLTSDFLS--SP-LKIM-KALPSPVVNDN-----EQKMKLEAFLQ--RLLFPEIQEMPTSLNNDSS 87 (327)
T ss_dssp --CCEE----ECCTTCCCSTTT--SS-CCCE-ECBCCCCCCCH-----HHHHHHHHHHH--HHHC---------------
T ss_pred cccchh----hhcCchHHHHhh--CC-cccc-cCCCCCCcccC-----chhHHHHHHHH--hccCCccccchHhhhcccc
Confidence 344454 566778999999 77 7776 78899999988 99999999999 67776551
Q ss_pred ------cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccC-CCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 78 ------DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTM-RGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 78 ------d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
.....+.+|+|+..+..++++.|++.|+++ +. +|.+|.||||+|+..|+.++|++|+++|++++..+..|.|
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~T 166 (327)
T 1sw6_A 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC
T ss_pred cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 111223458888888999999999999998 77 8999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCc--HHHHHHHHHhCCCcccccCCCCchHHHHHHh----CCCCccccccchhhHhHHHHHHHHHHHHHHHh
Q 044420 151 ALFFTCISTDL--HDLALKLLEDHSGLAVARDGNYETALHVLAR----KPSAFASRNQGLLTRLMHSALQLVKSLWEAIL 224 (545)
Q Consensus 151 ~l~~aa~~~~~--~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 224 (545)
|||+|+..+.. .+.+..++.....+++.+|.+|+||||+|+. .|+ .++++.+++.+.
T Consensus 167 pLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-----------------~~~v~~Ll~~~~ 229 (327)
T 1sw6_A 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-----------------SAAAKYYLDILM 229 (327)
T ss_dssp HHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-----------------HHHHHHHHHHHH
Confidence 99999997541 2455566666567899999999999999998 664 355556655532
Q ss_pred cC---------------CchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHH
Q 044420 225 KR---------------DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFN 289 (545)
Q Consensus 225 ~~---------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~ 289 (545)
.. ...+++..+..|.||||.|+. +++|+++ + ++.+|.+|+||||+|+.+|+.++++
T Consensus 230 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~ 300 (327)
T 1sw6_A 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVD 300 (327)
T ss_dssp HHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 10 135667788999999999996 8999998 4 7789999999999999999999999
Q ss_pred HHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 290 LIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 290 ~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
+|+++|++ ++.+|.+|+||||+|++.|
T Consensus 301 ~Ll~~Gad----~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 301 ALLDYGAD----PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHTTCC----TTCCCTTSCCGGGGTCC--
T ss_pred HHHHcCCC----CcccCCCCCCHHHHHHhcC
Confidence 99999999 7889999999999999865
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.7e-36 Score=293.28 Aligned_cols=219 Identities=21% Similarity=0.183 Sum_probs=190.2
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|+||||+||..|+.+++++|++ .+ .+++ .. +|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~d~~g~t 97 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLN--AG-ALKN-LL--ENEFPLHQAATLEDTKIVKILLF--SGLDDSQFDDKGNT 97 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH--TT-GGGS-CC--TTCCHHHHHTTSSSCHHHHHHHH--TTCCTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHh--CC-CCCC-CC--CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCc
Confidence 355779999999999999999999999 66 6665 33 59999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCC-CcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGEN-MTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~ 162 (545)
|||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|+++|++.
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------------- 155 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------------- 155 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---------------------
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---------------------
Confidence 999999999999999999999997 8899999 89999999999999999999998751
Q ss_pred HHHHHHHHhCCCcccccCC-CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChH
Q 044420 163 DLALKLLEDHSGLAVARDG-NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHL 241 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tp 241 (545)
.+. .|.||||+|+..|+. ++++.|++.. .+++..+..|.||
T Consensus 156 ----------------~~~~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g-----ad~n~~~~~g~t~ 197 (285)
T 3kea_A 156 ----------------FDLAILLSCIHITIKNGHV-----------------DMMILLLDYM-----TSTNTNNSLLFIP 197 (285)
T ss_dssp ----------------CCCSTHHHHHHHHHHTTCH-----------------HHHHHHHHHH-----HHTCTTCCCBCCT
T ss_pred ----------------ccccCCccHHHHHHHcChH-----------------HHHHHHHHcC-----CCCCcccCCCCCh
Confidence 122 677888888888743 5555555554 3445667889997
Q ss_pred -HHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccch
Q 044420 242 -LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 242 -Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
||+|+..|+.+++++|+++|++ ++.+| +.|+..|+.+++++|+++|++.
T Consensus 198 ~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 198 DIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp THHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999 88777 3567899999999999999883
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.4e-37 Score=289.79 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=171.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMK--PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 118 (545)
.+|.+|+||||+|+..|+.+++++|++... +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 567889999999999999998888887311 2378888999999999999999999999999999986 8888999999
Q ss_pred HHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcc
Q 044420 119 LYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFA 198 (545)
Q Consensus 119 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 198 (545)
||+|+..|+.+++++|+++++++...
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~------------------------------------------------------ 107 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLH------------------------------------------------------ 107 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSS------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHH------------------------------------------------------
Confidence 99999999999999999887641100
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccccccc-CCCcHHH
Q 044420 199 SRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDD-NNRSIFH 277 (545)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh 277 (545)
......+..|.||||+|+..|+.+++++|+++|++ ++.+|. .|+||||
T Consensus 108 ------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 108 ------------------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALH 156 (236)
T ss_dssp ------------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHH
T ss_pred ------------------------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHH
Confidence 01112335678888888888888888888888888 777887 8888888
Q ss_pred HHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccc--c
Q 044420 278 IAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFR--E 355 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~--~ 355 (545)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.+. +++. .
T Consensus 157 ~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-------------------ga~~~~~ 213 (236)
T 1ikn_D 157 LAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-------------------TLENLQM 213 (236)
T ss_dssp HHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-------------------SCGGGSS
T ss_pred HHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHHHHHccCchHHHHHHHHc-------------------chhhhhc
Confidence 88888888888888888888 677888888888888888888887777433 3333 4
Q ss_pred ccCCCCCChhhhhHh
Q 044420 356 MKNSEGKTPRELFSI 370 (545)
Q Consensus 356 ~~n~~G~Tpl~~a~~ 370 (545)
.++.+|.||.+...+
T Consensus 214 ~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 214 LPESEDEESYDTESE 228 (236)
T ss_dssp CCCCCTTTCCCCC--
T ss_pred CCccchHHHHhhhcc
Confidence 788888888887654
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.8e-36 Score=286.11 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=188.5
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCch---hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRS---ILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~---~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
..+.+|+||||+||..|+.++++.|++ ... . +++ ..+..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~ 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIR-QVK-GDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFR 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTT
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHH-Hhh-ccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCC
Confidence 456789999999999999999999999 222 1 343 788999999999999999999999999 89999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcc-----cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHH
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNER-----LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~a 155 (545)
|.||||+|+..|+.+++++|+++|++ ..+..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------- 146 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ----------- 146 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-----------
Confidence 99999999999999999999999864 23788999999999999999999999999998862211
Q ss_pred HHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc
Q 044420 156 CISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI 235 (545)
Q Consensus 156 a~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 235 (545)
+
T Consensus 147 -------------------------------------------------------------------------------~ 147 (236)
T 1ikn_D 147 -------------------------------------------------------------------------------E 147 (236)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred c-CCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 236 R-KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 236 ~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|++.. ...++.+|.||.+
T Consensus 148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~~~~ 224 (236)
T 1ikn_D 148 PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEESYD 224 (236)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTTCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHHHHh
Confidence 2 578899999999999999999999999 99999999999999999999999999999999853 4578999999999
Q ss_pred hhccCC
Q 044420 315 LAAKSP 320 (545)
Q Consensus 315 ~A~~~~ 320 (545)
.+....
T Consensus 225 ~~~~~~ 230 (236)
T 1ikn_D 225 TESEFT 230 (236)
T ss_dssp CC----
T ss_pred hhcccc
Confidence 887643
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.5e-35 Score=274.65 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=118.3
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-----ccccCCCCc
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDL-----TLQDRNGNT 83 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~T 83 (545)
|+||||.||+.|+.++++.|++ ..+ .+++ ..|..|+||||+|+..|+.+++++|++ .++++ +.+|..|.|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~-~~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLK-FEG-CEVH-QRGAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHT-TTC-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-hcC-CCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcC
Confidence 5555555555555555555555 223 3333 445555555555555555555555555 34443 344445555
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCC-------------CCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGG-------------ENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
|||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------- 146 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---------- 146 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence 555555555555555555555554 33332 455555555555555555555555443
Q ss_pred hHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchh
Q 044420 151 ALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSE 230 (545)
Q Consensus 151 ~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 230 (545)
T Consensus 147 -------------------------------------------------------------------------------- 146 (232)
T 2rfa_A 147 -------------------------------------------------------------------------------- 146 (232)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCChHHHHHHhcCcHHHH----HHHHHHCCCcc-----cccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 231 FTDLIRKPSHLLFDAAELGNFEFL----AELICSYPDLV-----HELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 231 ~~~~~~~g~tpLh~A~~~g~~~~v----~~Ll~~~~~~~-----~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
++..|..|.||||+|+..|+.+++ ++|+++|++.. +.+|..|+||||+|+.+|+.+++++|+++|..
T Consensus 147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 223345566666666666676666 88888888722 68899999999999999999999999999876
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.6e-35 Score=277.42 Aligned_cols=208 Identities=20% Similarity=0.196 Sum_probs=179.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccc----cCCCCCCCcHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLL----TMRGGENMTPLY 120 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~ 120 (545)
.|+||||+|++.|+.+++++|++. .|++++.+|..|+||||+|+..|+.+++++|+++|+++. +.+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999994 499999999999999999999999999999999999853 456779999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
+|+..|+.+++++|+++|++++..+.... ++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-------------------------------------~~------------ 111 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSV-------------------------------------FH------------ 111 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGG-------------------------------------GS------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcc-------------------------------------ee------------
Confidence 99999999999999999987544332110 00
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~ 280 (545)
......|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus 112 ----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 112 ----------------------------YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILI 162 (232)
T ss_dssp ----------------------------CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred ----------------------------ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence 00112346789999999999999999999999999 9999999999999999
Q ss_pred HhCchHHH----HHHHhhccchhh--hhhcccCCCCChhhhhccCCCCCccccccch
Q 044420 281 LHRHANIF----NLIYEIGFTKEL--MATFKDHDQNNMLHLAAKSPHPSRVSIVSGA 331 (545)
Q Consensus 281 ~~~~~~iv----~~Ll~~g~~~~~--~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~ 331 (545)
.+++.+++ ++|+++|++... +.+.+|..|+||||+|++.|+.+++++|.+.
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999988 999999997421 1268999999999999999999999988643
No 42
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=275.59 Aligned_cols=197 Identities=21% Similarity=0.128 Sum_probs=159.1
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||.|+..|+.+++++|++ .+ .......+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~-~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 38 PDKENVTLLHWAAINNRIDLVKYYIS--KG-AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--YGADPSLIDGEGCSC 112 (240)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH--TT-CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHH--cC-CcchhhcCCcCCChhHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCH
Confidence 45679999999999999999999999 56 55655666779999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC-HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ-RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++ .+++++|++.|++++..+.
T Consensus 113 l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~----------------- 174 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK----------------- 174 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCT-----------------
T ss_pred HHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhc-----------------
Confidence 99999999999999999999997 8999999999999997766 7888888888876443332
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
..|.||||+|+..|+. ++++.|++. + .+.+..+..|.||||
T Consensus 175 -----------------~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~----g-~~~~~~~~~g~t~l~ 215 (240)
T 3eu9_A 175 -----------------YHKNTALHWAVLAGNT-----------------TVISLLLEA----G-ANVDAQNIKGESALD 215 (240)
T ss_dssp -----------------TTCCCHHHHHHHHTCH-----------------HHHHHHHHH----T-CCTTCBCTTSCBHHH
T ss_pred -----------------cCCCcHHHHHHHcCCH-----------------HHHHHHHHc----C-CCCCCcCCCCCCHHH
Confidence 1556666666666533 333333333 2 334455677788888
Q ss_pred HHHhcCcHHHHHHHHHHCCC
Q 044420 244 DAAELGNFEFLAELICSYPD 263 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~~~ 263 (545)
+|++.|+.+++++|++.+++
T Consensus 216 ~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC--
T ss_pred HHHHcCcHHHHHHHHHhhhc
Confidence 88888888899999888776
No 43
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1e-35 Score=278.31 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=183.6
Q ss_pred cCCHHHHHHHHHcCCCcccccc-cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 044420 56 ARQTGFVEELLKLMKPEDLTLQ-DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYL 134 (545)
Q Consensus 56 ~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 134 (545)
.|+.+++++|++ .|.+++.. |..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus 1 gg~~~~i~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 1 GDAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp ----CCEETTEE--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHH--cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 367889999999 78888765 899999999999999999999999999997 88999999999999999999999999
Q ss_pred HHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHH
Q 044420 135 YDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQ 214 (545)
Q Consensus 135 l~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~ 214 (545)
+++++. +++.++..|.||||+|+..++. +
T Consensus 78 l~~~~~----------------------------------~~~~~~~~g~t~L~~A~~~~~~-----------------~ 106 (223)
T 2f8y_A 78 IRNRAT----------------------------------DLDARMHDGTTPLILAARLAVE-----------------G 106 (223)
T ss_dssp HHBTTS----------------------------------CTTCCCTTCCCHHHHHHHHTCH-----------------H
T ss_pred HHcCCC----------------------------------CcccCCCCCCcHHHHHHHhCcH-----------------H
Confidence 998762 2456677888888888888854 3
Q ss_pred HHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 215 LVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
++ +.+++.+ .+.+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++
T Consensus 107 ~~----~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 107 ML----EDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HH----HHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HH----HHHHHcC-CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 44 4444444 45566778899999999999999999999999999 899999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 295 GFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 295 g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
|++ ++.+|..|+||||+|++.++.+++++|.+
T Consensus 181 ga~----~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 181 FAN----RDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp TCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCC----CccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 998 77899999999999999999999988853
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.1e-34 Score=262.23 Aligned_cols=198 Identities=18% Similarity=0.126 Sum_probs=156.8
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..+.||||.||..|+.+.++.|++ ..+ .+++ ..|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~-~~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQ-DTT-YQVD-EVDTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNSISDSPYL 77 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHT-CTT-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHH-cCC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHH
Confidence 357888999999999999998888 333 3554 678888899999999999999999998 78888888888999999
Q ss_pred HHHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 87 FAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
+|+..|+.+++++|++. ++++ +.+|..|.||||+|+..|+.+++++|+++|.
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------------------------- 130 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGR-------------------------- 130 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--------------------------
T ss_pred HHHHcCCHHHHHHHHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--------------------------
Confidence 99999999999998854 4454 7888888999999999999998888888873
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
.+++.+|..|.||||+|+..++..
T Consensus 131 --------~~~~~~~~~g~t~L~~A~~~~~~~------------------------------------------------ 154 (201)
T 3hra_A 131 --------EDIDFQNDFGYTALIEAVGLREGN------------------------------------------------ 154 (201)
T ss_dssp --------CCTTCCCTTSCCHHHHHHHSSCCS------------------------------------------------
T ss_pred --------CCcCCCCCCCCCHHHHHHHhccch------------------------------------------------
Confidence 123444555555555555444210
Q ss_pred HhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhc
Q 044420 246 AELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295 (545)
Q Consensus 246 ~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g 295 (545)
.++.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 155 --~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 155 --QLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp --HHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred --hhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 1137899999999999 8899999999999999999999999999876
No 45
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-36 Score=299.17 Aligned_cols=265 Identities=9% Similarity=0.000 Sum_probs=202.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccC------------
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTM------------ 110 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~------------ 110 (545)
+..+.+|+| ..+.++|++|++ +|++++.+|..|.|+++ |+.++|+.|+++|++. +.
T Consensus 20 ~~~~~~~~~----~~~~dlv~~ll~--~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~ 87 (327)
T 1sw6_A 20 NDRTAGPII----TFTHDLTSDFLS--SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSS 87 (327)
T ss_dssp -----CCEE----ECCTTCCCSTTT--SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------
T ss_pred ccccccchh----hhcCchHHHHhh--CCcccccCCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhcccc
Confidence 345667777 456678999999 89999999999999988 9999999999999774 32
Q ss_pred -----CCCCCCcHHHHHHHcCCHHHHHHHHHcccCCcc-CCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCc
Q 044420 111 -----RGGENMTPLYMAAVLAQRDMALYLYDDAKAKDN-LTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184 (545)
Q Consensus 111 -----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~ 184 (545)
+.....+.+|.|+..+..+++++|++.|++++. .+..|.||||+|+..+. ..+.++|.++|++++.+|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~~Gad~n~~d~~g~ 165 (327)
T 1sw6_A 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN--LELVKHLVKHGSNRLYGDNMGE 165 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTBCCTTCC
T ss_pred cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCCCcCCCCC
Confidence 111122345888888899999999999999998 89999999999999875 3566777788999999999999
Q ss_pred hHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh----cCcHHHHHHHHHH
Q 044420 185 TALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE----LGNFEFLAELICS 260 (545)
Q Consensus 185 tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~ 260 (545)
||||+|+..|+.. ..+.++.+++.+. .+++..|..|.||||+|++ .|+.+++++|++.
T Consensus 166 TpLh~A~~~g~~~--------------~~~~~~~ll~~~~----~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 166 SCLVKAVKSVNNY--------------DSGTFEALLDYLY----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp CHHHHHHHSSHHH--------------HTTCHHHHHHHHG----GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred CHHHHHHHhcccc--------------cHHHHHHHHHhhh----ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 9999999998510 1233445555553 3466778999999999999 9999999999988
Q ss_pred --------------------CCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 261 --------------------YPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 261 --------------------~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
+++ ++.+|..|+||||.|+. +++|+++ + +|.+|.+|+||||+|++.|
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~--~----~n~~d~~G~TpLh~A~~~g 294 (327)
T 1sw6_A 228 LMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN--M----LNAQDSNGDTCLNIAARLG 294 (327)
T ss_dssp HHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH--T----TTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh--C----CCCCCCCCCCHHHHHHHcC
Confidence 777 89999999999999995 8999987 3 6789999999999999999
Q ss_pred CCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhh
Q 044420 321 HPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 321 ~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~ 371 (545)
+.+++++|.+ .|++++.+|.+|+||||+|++.
T Consensus 295 ~~~~v~~Ll~-------------------~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 295 NISIVDALLD-------------------YGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp CHHHHHHHHH-------------------TTCCTTCCCTTSCCGGGGTCC-
T ss_pred CHHHHHHHHH-------------------cCCCCcccCCCCCCHHHHHHhc
Confidence 9999888743 3889999999999999999754
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.4e-34 Score=262.07 Aligned_cols=191 Identities=22% Similarity=0.240 Sum_probs=170.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
+..+.||||.|+..|+.+.++.|++. .+.+++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 45789999999999999999999995 45599999999999999999999999999999999997 89999999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+..|+.+++++|++++.. +++
T Consensus 80 ~~~~~~~~~~~Ll~~~~~----------------------------------~~~------------------------- 100 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATP----------------------------------DLN------------------------- 100 (201)
T ss_dssp HHTTCHHHHHHHHHHSCC----------------------------------CTT-------------------------
T ss_pred HHcCCHHHHHHHHhccCc----------------------------------ccc-------------------------
Confidence 999999999999965431 111
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHC-CCcccccccCCCcHHHHHHH
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSY-PDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~ 281 (545)
..+..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+.
T Consensus 101 ------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 101 ------------------------------KHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALIEAVG 149 (201)
T ss_dssp ------------------------------CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-TTCCCTTSCCHHHHHHH
T ss_pred ------------------------------cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCCCHHHHHHH
Confidence 12256788888888999999999999999 55 99999999999999999
Q ss_pred hCc-----hHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCcccccc
Q 044420 282 HRH-----ANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 282 ~~~-----~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
.++ .+++++|+++|++ ++.+|.+|+||||+|++.|+.+++++|.
T Consensus 150 ~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 150 LREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp SSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 987 9999999999999 7889999999999999999999988874
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.4e-34 Score=275.13 Aligned_cols=207 Identities=14% Similarity=0.044 Sum_probs=168.3
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCccccc----ccCCCCcHHHHHHHh---CCHHHHHHHHHcCccccc----
Q 044420 45 GYETLLHLAAGARQTG----FVEELLKLMKPEDLTL----QDRNGNTAFCFAVAA---GSIHIAKIMLKKNERLLT---- 109 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~---- 109 (545)
.|+||||.|++.|+.+ ++++|++ .+++++. +|..|+||||+|+.. |+.+++++|++.|+++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 4889999999999997 6677777 6899998 899999999999999 999999999999987621
Q ss_pred ------CCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCC
Q 044420 110 ------MRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNY 183 (545)
Q Consensus 110 ------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g 183 (545)
.+|..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~---------------------------------- 124 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF---------------------------------- 124 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG----------------------------------
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc----------------------------------
Confidence 2347899999999999999999999999988555444322
Q ss_pred chHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH---H
Q 044420 184 ETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC---S 260 (545)
Q Consensus 184 ~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~---~ 260 (545)
++ .+....+..|.||||+|+..|+.+++++|++ +
T Consensus 125 -~~------------------------------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 125 -FQ------------------------------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp -GS------------------------------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred -cc------------------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 10 0001122458899999999999999999999 8
Q ss_pred CCCcccccccCCCcHHHHHHH--hCchH-------HHHHHHhhccchhh---hhhcccCCCCChhhhhccCCCCCccccc
Q 044420 261 YPDLVHELDDNNRSIFHIAVL--HRHAN-------IFNLIYEIGFTKEL---MATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 261 ~~~~~~~~d~~G~t~Lh~A~~--~~~~~-------iv~~Ll~~g~~~~~---~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
|++ ++.+|.+|+||||+|+. +++.+ ++++|+++|++++. ..+.+|..|+||||+|++.|+.+++++|
T Consensus 162 ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 162 PAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 888 88999999999999998 77887 99999999988310 0178999999999999999999999888
Q ss_pred cch
Q 044420 329 SGA 331 (545)
Q Consensus 329 ~~~ 331 (545)
.+.
T Consensus 241 l~~ 243 (256)
T 2etb_A 241 LQR 243 (256)
T ss_dssp HHH
T ss_pred HhC
Confidence 654
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=7.9e-34 Score=271.51 Aligned_cols=195 Identities=18% Similarity=0.163 Sum_probs=163.4
Q ss_pred CCHHhHHHHHcCChH----HHHHhhcCCCCchhhhh---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCccccc--
Q 044420 9 ICVPLQKAALKGNWP----TAKHLLGNEDPRSILCA---GIAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTL-- 76 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~----~v~~Ll~~~~~~~~~~~---~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~-- 76 (545)
|+||||.||+.|+.+ ++++|++ .+ .+++. ..|..|+||||+|+.. |+.+++++|++ .|++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~--~g-~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~ 76 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW--NS-KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ--IDKDSGNPK 76 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH--HT-CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH--HHHHTTCSS
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH--cC-CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh--cCCcccchh
Confidence 789999999999998 4556666 45 55552 2789999999999999 99999999999 6777663
Q ss_pred ---------ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCC-------------CCcHHHHHHHcCCHHHHHHH
Q 044420 77 ---------QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGE-------------NMTPLYMAAVLAQRDMALYL 134 (545)
Q Consensus 77 ---------~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~iv~~L 134 (545)
+|..|.||||+|+..|+.+++++|+++|+++ +.++.. |.||||+|+..|+.+++++|
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 155 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 3478999999999999999999999999997 777776 99999999999999999999
Q ss_pred HH---cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHH
Q 044420 135 YD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHS 211 (545)
Q Consensus 135 l~---~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~ 211 (545)
++ +|++ ++.+|.+|+||||+|+..+
T Consensus 156 l~~~~~ga~-----------------------------------~n~~d~~g~TpLh~A~~~~----------------- 183 (256)
T 2etb_A 156 LENPHQPAS-----------------------------------LEATDSLGNTVLHALVMIA----------------- 183 (256)
T ss_dssp HHCSSCCCC-----------------------------------TTCCCTTSCCHHHHHHHHC-----------------
T ss_pred HhccccCCC-----------------------------------cCccCCCCCCHHHHHHHcc-----------------
Confidence 99 6664 4555666666666666522
Q ss_pred HHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCc-------HHHHHHHHHHCCCcc-------cccccCCCcHHH
Q 044420 212 ALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGN-------FEFLAELICSYPDLV-------HELDDNNRSIFH 277 (545)
Q Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~-------~~~v~~Ll~~~~~~~-------~~~d~~G~t~Lh 277 (545)
.++ .+++++|+++|++ + +.+|..|+||||
T Consensus 184 ------------------------------------~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~ 226 (256)
T 2etb_A 184 ------------------------------------DNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLK 226 (256)
T ss_dssp ------------------------------------CSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHH
T ss_pred ------------------------------------cCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHH
Confidence 222 3488999999988 6 889999999999
Q ss_pred HHHHhCchHHHHHHHhhccch
Q 044420 278 IAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
+|+..|+.+++++|+++|.+.
T Consensus 227 ~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 227 LAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999999998874
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.1e-34 Score=276.25 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=152.2
Q ss_pred CcccccCCHHhHHHHHcCChHHHHHhhcC--CCCchhhh---hccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcc-
Q 044420 3 RNVYLNICVPLQKAALKGNWPTAKHLLGN--EDPRSILC---AGIAKGYETLLHLAAGA---RQTGFVEELLKLMKPED- 73 (545)
Q Consensus 3 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~---~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~- 73 (545)
+..+.+|+||||.||+.|+.++|+.|++. ..+ ..++ ...|..|+||||+|+.. |+.+++++|++ .|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~--~ga~~ 83 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK-KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD--VARKT 83 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC-CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH--HHHHT
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc-cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH--hhccc
Confidence 44567788999999999999988888861 011 1221 13477889999999976 88999999998 5554
Q ss_pred ------ccc----ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCC--------------CCCcHHHHHHHcCCHH
Q 044420 74 ------LTL----QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGG--------------ENMTPLYMAAVLAQRD 129 (545)
Q Consensus 74 ------~~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~ 129 (545)
++. +|..|.||||+|+..|+.++|++|+++|+++ +.++. .|.||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 232 5668899999999999999999999998886 66765 7889999999988888
Q ss_pred HHHHHHH---cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhh
Q 044420 130 MALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLT 206 (545)
Q Consensus 130 iv~~Ll~---~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~ 206 (545)
++++|++ +|++ ++.+|.+|+||||+|+..|+...
T Consensus 163 ~v~~Ll~~~~~gad-----------------------------------~~~~d~~g~tpLh~A~~~~~~~~-------- 199 (273)
T 2pnn_A 163 IVKFLLQNSWQPAD-----------------------------------ISARDSVGNTVLHALVEVADNTV-------- 199 (273)
T ss_dssp HHHHHHHCSSCCCC-----------------------------------TTCCCTTSCCHHHHHHHHCCSCH--------
T ss_pred HHHHHHhcccCCCC-----------------------------------ceeeCCCCCcHHHHHHHccCcch--------
Confidence 8888888 5554 45666677777777776553210
Q ss_pred HhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc-------ccccCCCcHHHHH
Q 044420 207 RLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH-------ELDDNNRSIFHIA 279 (545)
Q Consensus 207 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-------~~d~~G~t~Lh~A 279 (545)
+.+.+ ..+++++|+++|++ ++ .+|..|+||||+|
T Consensus 200 -------------------------------~~~~~-------~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 200 -------------------------------DNTKF-------VTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp -------------------------------HHHHH-------HHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHH
T ss_pred -------------------------------hHHHH-------HHHHHHHHHHhhhh-cccccccccccCCCCCCHHHHH
Confidence 00000 15677888888777 54 5788888899988
Q ss_pred HHhCchHHHHHHHhhcc-chhhhhhcccCCCCChh
Q 044420 280 VLHRHANIFNLIYEIGF-TKELMATFKDHDQNNML 313 (545)
Q Consensus 280 ~~~~~~~iv~~Ll~~g~-~~~~~~n~~d~~G~TpL 313 (545)
+.+|+.+++++|+++|+ + ....+..+.+|-
T Consensus 241 ~~~g~~~iv~~Ll~~ga~d----p~~~~~~~~~~~ 271 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREIHE----PECRHAAAHHHH 271 (273)
T ss_dssp HHTTCHHHHHHHHHHHTC-----------------
T ss_pred HHhChHHHHHHHHHCCCCC----chhhhhhhhhcc
Confidence 88888888888888888 4 344555555553
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=6.9e-33 Score=246.34 Aligned_cols=157 Identities=23% Similarity=0.294 Sum_probs=135.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
++|+.||+.|+.++|+.|++ .|+++|.+|.+|+||||+|+..++.++++.|+++|+++ +.+|.+|.||||+|++.|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 47899999999999999999 79999999999999999999999999999999999997 8899999999999999999
Q ss_pred HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhH
Q 044420 128 RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTR 207 (545)
Q Consensus 128 ~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 207 (545)
.+++++|+++|++++ .+
T Consensus 83 ~~~v~~Ll~~gadvn-----------------------------------~~---------------------------- 99 (169)
T 4gpm_A 83 KEVVKLLISKGADVN-----------------------------------AK---------------------------- 99 (169)
T ss_dssp HHHHHHHHHTTCCTT-----------------------------------CC----------------------------
T ss_pred HHHHHHHHHCcCCCC-----------------------------------CC----------------------------
Confidence 999999998887522 11
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHH
Q 044420 208 LMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287 (545)
Q Consensus 208 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i 287 (545)
|.+|+||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+.++
T Consensus 100 ---------------------------d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~i 151 (169)
T 4gpm_A 100 ---------------------------DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEV 151 (169)
T ss_dssp ---------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ---------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence 24567788888888888999999999999 88999999999999999999999
Q ss_pred HHHHHhhccch
Q 044420 288 FNLIYEIGFTK 298 (545)
Q Consensus 288 v~~Ll~~g~~~ 298 (545)
+++|+++|++.
T Consensus 152 v~~Ll~~GA~i 162 (169)
T 4gpm_A 152 VKLLEKQGGWL 162 (169)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHCCCCc
Confidence 99999999883
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=9.1e-34 Score=273.82 Aligned_cols=214 Identities=15% Similarity=0.095 Sum_probs=173.7
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCcccc----cccCCCCcHHHHHHHh---CCHHHHHHHHHcCccc----
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLM--KPEDLT----LQDRNGNTAFCFAVAA---GSIHIAKIMLKKNERL---- 107 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~---- 107 (545)
..|..|+||||.|++.|+.++|+.|++.. .+.+++ .+|..|.||||+|+.. |+.+++++|+++|++.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 57899999999999999999999888721 355555 4588999999999987 9999999999998763
Q ss_pred --ccC----CCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCC
Q 044420 108 --LTM----RGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181 (545)
Q Consensus 108 --~~~----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~ 181 (545)
.+. +|..|.||||+|+..|+.+++++|+++|++++..+..+..
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~------------------------------- 136 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF------------------------------- 136 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------------------
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------------------
Confidence 122 5678999999999999999999999999985554432200
Q ss_pred CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH--
Q 044420 182 NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-- 259 (545)
Q Consensus 182 ~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-- 259 (545)
.. .+....+..|.||||+|+..|+.+++++|++
T Consensus 137 -----------~~----------------------------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (273)
T 2pnn_A 137 -----------KK----------------------------------TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171 (273)
T ss_dssp -----------SS----------------------------------CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred -----------cc----------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 00 0011223678999999999999999999999
Q ss_pred -HCCCcccccccCCCcHHHHHHHhCc---------hHHHHHHHhhccchhh---hhhcccCCCCChhhhhccCCCCCccc
Q 044420 260 -SYPDLVHELDDNNRSIFHIAVLHRH---------ANIFNLIYEIGFTKEL---MATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 260 -~~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~g~~~~~---~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
+|++ ++.+|.+|+||||+|+..++ .+++++|+++|++++. .++.+|.+|+||||+|++.|+.++++
T Consensus 172 ~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 172 WQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence 8999 99999999999999999988 7999999999998321 01459999999999999999999999
Q ss_pred cccch
Q 044420 327 IVSGA 331 (545)
Q Consensus 327 ~L~~~ 331 (545)
+|.+.
T Consensus 251 ~Ll~~ 255 (273)
T 2pnn_A 251 YILQR 255 (273)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 88543
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=3.1e-32 Score=261.02 Aligned_cols=206 Identities=18% Similarity=0.132 Sum_probs=159.7
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcC--CCCchhhh---hccCCCCCcHHHHHH---HcCCHHHHHHHHHcCCCcc-----
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGN--EDPRSILC---AGIAKGYETLLHLAA---GARQTGFVEELLKLMKPED----- 73 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~---~~~~~~g~T~Lh~A~---~~g~~~~v~~Ll~~~~~~~----- 73 (545)
..++++||.||+.|+.+.++.|++. ..+ ..++ ...+..|+||||+|+ +.|+.+++++|++ .+++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~ 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD--IAEKTGNMR 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH--HHHHTTCHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH--hcccccchH
Confidence 4578999999999999965555540 033 3333 123477999999999 7799999999999 4543
Q ss_pred ------cccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCC--------------CCCCcHHHHHHHcCCHHHHHH
Q 044420 74 ------LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRG--------------GENMTPLYMAAVLAQRDMALY 133 (545)
Q Consensus 74 ------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~iv~~ 133 (545)
++.+|..|.||||+|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 4556668999999999999999999999999997 7777 689999999999999999999
Q ss_pred HHH---cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHH
Q 044420 134 LYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMH 210 (545)
Q Consensus 134 Ll~---~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~ 210 (545)
|++ +|++ ++.+|.+|+||||+|+..++...
T Consensus 159 Ll~~~~~ga~-----------------------------------~~~~d~~g~TpLh~A~~~~~~~~------------ 191 (260)
T 3jxi_A 159 LTENGHKQAD-----------------------------------LRRQDSRGNTVLHALVAIADNTR------------ 191 (260)
T ss_dssp HHHCSSCCCC-----------------------------------TTCCCTTSCCHHHHHHHHCCSSH------------
T ss_pred HHhccccCCC-----------------------------------CcccCCCCCcHHHHHHHhccCch------------
Confidence 999 6654 45666677777777776553210
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcc-------cccccCCCcHHHHHHHhC
Q 044420 211 SALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLV-------HELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 211 ~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-------~~~d~~G~t~Lh~A~~~~ 283 (545)
+ ......+++++|+++|++ + +.+|..|+||||+|+..|
T Consensus 192 ---~-------------------------------~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 192 ---E-------------------------------NTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp ---H-------------------------------HHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred ---h-------------------------------HHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHcC
Confidence 0 000125678888888877 5 678999999999999999
Q ss_pred chHHHHHHHhhccch
Q 044420 284 HANIFNLIYEIGFTK 298 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~~ 298 (545)
+.+++++|+++|.++
T Consensus 237 ~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 237 KIGIFQHIIRREIAD 251 (260)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCc
Confidence 999999999998874
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.3e-31 Score=235.52 Aligned_cols=159 Identities=22% Similarity=0.283 Sum_probs=145.3
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
++|+.||+.|+.++|+.|++ .+ .+++ .+|.+|+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~G-advn-~~d~~g~t~l~~a~~~~~~~~~~~ll~--~gad~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NG-ADVN-ASDSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH--CC-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHh--cccchhhhccCCCCHHHHHHH
Confidence 57999999999999999999 77 7776 789999999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHH
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLE 170 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~ 170 (545)
.|+.++|++|+++|+++ +.+|.+|+||||+|++.|+.+++++|+++|++++..+..|.|||++|+..+. ..+.++|.
T Consensus 80 ~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~--~~iv~~Ll 156 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN--EEVVKLLE 156 (169)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHH
T ss_pred cCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC--HHHHHHHH
Confidence 99999999999999997 8999999999999999999999999999999999999999999999998765 46778999
Q ss_pred hCCCcccc
Q 044420 171 DHSGLAVA 178 (545)
Q Consensus 171 ~~~~~~~~ 178 (545)
++|++++.
T Consensus 157 ~~GA~ie~ 164 (169)
T 4gpm_A 157 KQGGWLEH 164 (169)
T ss_dssp TC------
T ss_pred HCCCCcCC
Confidence 99998764
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.2e-32 Score=260.90 Aligned_cols=210 Identities=15% Similarity=0.059 Sum_probs=171.9
Q ss_pred CCCCCcHHHHHHHcCCHHH----HHHHHHcCCCccccccc----CCCCcHHHHHH---HhCCHHHHHHHHHcCccc----
Q 044420 43 AKGYETLLHLAAGARQTGF----VEELLKLMKPEDLTLQD----RNGNTAFCFAV---AAGSIHIAKIMLKKNERL---- 107 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~----v~~Ll~~~~~~~~~~~d----~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~~---- 107 (545)
+..|+||||.|++.|+.+. +++|++ .+.+++..+ ..|.||||+|+ ..|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLT--HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999995 555555 588888766 67999999999 779999999999998652
Q ss_pred ------ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCC
Q 044420 108 ------LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181 (545)
Q Consensus 108 ------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~ 181 (545)
.+..|..|.||||+|+..|+.+++++|+++|++++..+..+. ...
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------------~~~--- 130 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF--------------------------FQP--- 130 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC--------------------------CSS---
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc--------------------------cCc---
Confidence 134455899999999999999999999999988554443110 000
Q ss_pred CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH--
Q 044420 182 NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-- 259 (545)
Q Consensus 182 ~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-- 259 (545)
.+....+..|.||||+|+..|+.+++++|++
T Consensus 131 -----------------------------------------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 131 -----------------------------------------------KDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp -----------------------------------------------SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred -----------------------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 0111223678999999999999999999999
Q ss_pred -HCCCcccccccCCCcHHHHHHHhCc---------hHHHHHHHhhccchhh---hhhcccCCCCChhhhhccCCCCCccc
Q 044420 260 -SYPDLVHELDDNNRSIFHIAVLHRH---------ANIFNLIYEIGFTKEL---MATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 260 -~~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~g~~~~~---~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
+|++ ++.+|.+|+||||+|+..++ .+++++|+++|++++. ..+.+|.+|+||||+|++.|+.++++
T Consensus 164 ~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 164 HKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 8999 99999999999999999887 7999999999998321 11779999999999999999999999
Q ss_pred cccch
Q 044420 327 IVSGA 331 (545)
Q Consensus 327 ~L~~~ 331 (545)
+|.+.
T Consensus 243 ~Ll~~ 247 (260)
T 3jxi_A 243 HIIRR 247 (260)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98654
No 55
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=4e-33 Score=261.43 Aligned_cols=190 Identities=15% Similarity=0.067 Sum_probs=164.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
..+.+|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh 92 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLH 92 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence 456678899999999999999999999 79999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
+|+..|+.+++++|+++|++++ .++
T Consensus 93 ~A~~~g~~~~v~~Ll~~ga~~~-----------------------------------~~~-------------------- 117 (229)
T 2vge_A 93 CAASCNDTVICMALVQHGAAIF-----------------------------------ATT-------------------- 117 (229)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTT-----------------------------------CCC--------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCcc-----------------------------------ccc--------------------
Confidence 9999999999999999988622 111
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH--HhcCcHHHHHHHHHHCCCcccccccCCCcHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA--AELGNFEFLAELICSYPDLVHELDDNNRSIFHI 278 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~ 278 (545)
+..|.||||+| +..|+.+++++|+++|++ ++.+|..|.||+|.
T Consensus 118 ----------------------------------~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~ 162 (229)
T 2vge_A 118 ----------------------------------LSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWD 162 (229)
T ss_dssp ----------------------------------SSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSC
T ss_pred ----------------------------------CCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHH
Confidence 13456666666 677889999999999999 89999999999997
Q ss_pred HHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 279 AVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 279 A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
++..+.. ++|++.|++.+ ++.+|.+|+||||+|++.|+.++++..
T Consensus 163 ~~~~~~~---~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 163 YSAEFGD---ELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp BCCSSTT---BCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred Hhhcccc---ccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehh
Confidence 6655433 57788888754 678999999999999999999998764
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=255.41 Aligned_cols=190 Identities=15% Similarity=0.123 Sum_probs=104.6
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCCcHHHHH
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE-DLTLQDRNGNTAFCFA 88 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~TpLh~A 88 (545)
.+++|.|+..|+.+.++.+++ ... ....+..|.+|+||||+|+..|+.+++++|++ .|+ +++.+|..|.||||+|
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~-~~~-~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSA-RLL-DYVVNIADSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCH-HHH-HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TSCCCTTCCCTTSCCHHHHG
T ss_pred ccCCCHHHHHHHHHHHHHHHH-HHH-hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCCCCCCCCCCHHHHH
Confidence 344555555555555555554 111 11122445555555555555555555555555 344 5555555555555555
Q ss_pred H-----HhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 89 V-----AAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 89 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
+ ..++.++++.|++.|.+. +..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~---------------------- 209 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADV---------------------- 209 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------------
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------------------
Confidence 5 344555555555555443 444555555555555555555555555554431
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
+..|.+|.||||
T Consensus 210 --------------------------------------------------------------------n~~d~~G~TpLh 221 (276)
T 4hbd_A 210 --------------------------------------------------------------------NVQDDDGSTALM 221 (276)
T ss_dssp --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred --------------------------------------------------------------------CCCCCCCCCHHH
Confidence 112244566666
Q ss_pred HHHhcCcHHHHHHHHH-HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhc
Q 044420 244 DAAELGNFEFLAELIC-SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g 295 (545)
+|+..|+.+++++|++ .|++ ++.+|.+|+||||+|+.+|+.+++++|++++
T Consensus 222 ~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 222 CACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 6666666777777776 5666 6667777777777777777777777776653
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.1e-30 Score=231.89 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=126.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
+.||||.|+..|+.++++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTT-CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHc-CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 46788888888888888888873 23337778888888888888888888888888888886 77788888888888888
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL 205 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 205 (545)
|+.+++++|+++|++++ .
T Consensus 80 ~~~~~v~~Ll~~g~~~~-----------------------------------~--------------------------- 97 (172)
T 3v30_A 80 GYTDIVGLLLERDVDIN-----------------------------------I--------------------------- 97 (172)
T ss_dssp TCHHHHHHHHTTTCCTT-----------------------------------C---------------------------
T ss_pred CCHHHHHHHHHcCCCCC-----------------------------------C---------------------------
Confidence 88888888887776411 1
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 206 TRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 206 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.
T Consensus 98 ----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~ 148 (172)
T 3v30_A 98 ----------------------------YDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYR 148 (172)
T ss_dssp ----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred ----------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcH
Confidence 124567777777777788888888888888 788888888888888888888
Q ss_pred HHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 286 NIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 286 ~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
+++++|+++|++ +..++..|.||
T Consensus 149 ~~~~~L~~~~~~----~~~~~~~~~~p 171 (172)
T 3v30_A 149 KVQQVIENHILK----LFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHH----HSCC-------
T ss_pred HHHHHHHHHHHH----HhcccCCCCCC
Confidence 888888888887 56677777776
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.5e-30 Score=235.83 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=146.5
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 40 AGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 40 ~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
+.+|..|+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L 105 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPL 105 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence 3678999999999999999999999999 68999999999999999999999999999999999997 88999999999
Q ss_pred HHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccc
Q 044420 120 YMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFAS 199 (545)
Q Consensus 120 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~ 199 (545)
|+|+..|+.+++++|+++|++++ .
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~-----------------------------------~--------------------- 129 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVN-----------------------------------D--------------------- 129 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSS-----------------------------------C---------------------
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC-----------------------------------C---------------------
Confidence 99999999999999999887521 1
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHH
Q 044420 200 RNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIA 279 (545)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A 279 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|
T Consensus 130 ----------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 130 ----------------------------------RNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASA 174 (192)
T ss_dssp ----------------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHH
T ss_pred ----------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 125568888888888999999999999999 899999999999999
Q ss_pred HHhCchHHHHHHHhhc
Q 044420 280 VLHRHANIFNLIYEIG 295 (545)
Q Consensus 280 ~~~~~~~iv~~Ll~~g 295 (545)
+..|+.+++++|+++|
T Consensus 175 ~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhcc
Confidence 9999999999999875
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.7e-31 Score=254.96 Aligned_cols=189 Identities=17% Similarity=0.237 Sum_probs=149.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCc-ccccCCCCCCCcHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNE-RLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~g~tpL~~A~ 123 (545)
.+.+++|.|+..|+.+.++.+++...+..+|.+|.+|+||||+|+..|+.+++++|++.|+ ++ +..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHH
Confidence 3556777777777777777777632222367777777777777777777777777777776 43 677777777777777
Q ss_pred -----HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcc
Q 044420 124 -----VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFA 198 (545)
Q Consensus 124 -----~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 198 (545)
..++.+++++|++.|.+
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~---------------------------------------------------------- 175 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNI---------------------------------------------------------- 175 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCT----------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHcCCC----------------------------------------------------------
Confidence 45666666666666543
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHH
Q 044420 199 SRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHI 278 (545)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~ 278 (545)
....+..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+
T Consensus 176 --------------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~ 222 (276)
T 4hbd_A 176 --------------------------------NAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMC 222 (276)
T ss_dssp --------------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred --------------------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHH
Confidence 111235678999999999999999999999999 99999999999999
Q ss_pred HHHhCchHHHHHHHh-hccchhhhhhcccCCCCChhhhhccCCCCCcccccc
Q 044420 279 AVLHRHANIFNLIYE-IGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 279 A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
|+..|+.+++++|++ .|++ ++.+|.+|+||||+|+..|+.+++++|.
T Consensus 223 A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 223 ACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp HHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 8998 7889999999999999999999998874
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=5.2e-30 Score=226.80 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=121.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
...||||.|+..|+.+++++|++ .+.+++.+|..|+||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 45678888888888888888887 677888888888888888877 8888888888888876 7778888888888888
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
.|+.+++++|+++|++++ .
T Consensus 80 ~~~~~~v~~Ll~~g~~~~-----------------------------------~-------------------------- 98 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADVN-----------------------------------I-------------------------- 98 (162)
T ss_dssp HTCHHHHHHHHHTTCCTT-----------------------------------C--------------------------
T ss_pred cCCHHHHHHHHHcCCCCC-----------------------------------C--------------------------
Confidence 888888888887776411 1
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
.|..|.||||+|++.|+.+++++|++++++.++.+|..|+||||+|+..++
T Consensus 99 -----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 99 -----------------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp -----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred -----------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 124456777777777777888888888887567788888888888888888
Q ss_pred hHHHHHHHhhccc
Q 044420 285 ANIFNLIYEIGFT 297 (545)
Q Consensus 285 ~~iv~~Ll~~g~~ 297 (545)
.+++++|+++|++
T Consensus 150 ~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 150 NEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCC
Confidence 8888888888764
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.4e-29 Score=225.29 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=140.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
.|.||||.|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 57899999999999999999999 68889999999999999999999999999999999987 8889999999999999
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
.|+.+++++|+++|++++ .
T Consensus 79 ~~~~~~v~~Ll~~g~~~~-----------------------------------~-------------------------- 97 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVN-----------------------------------E-------------------------- 97 (167)
T ss_dssp HTCHHHHHHHHHHTCCTT-----------------------------------C--------------------------
T ss_pred cCCHHHHHHHHHCCCCCC-----------------------------------c--------------------------
Confidence 999999999998887521 1
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+
T Consensus 98 -----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 98 -----------------------------YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGY 147 (167)
T ss_dssp -----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred -----------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCc
Confidence 124567888888888889999999999999 88899999999999999999
Q ss_pred hHHHHHHHhhccc
Q 044420 285 ANIFNLIYEIGFT 297 (545)
Q Consensus 285 ~~iv~~Ll~~g~~ 297 (545)
.+++++|++++.+
T Consensus 148 ~~~~~~L~~~~~~ 160 (167)
T 3v31_A 148 RSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998766
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.6e-29 Score=224.10 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=140.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
....+.||||.|++.|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 45667899999999999999999999 79999999999999999999999999999999999997 8899999999999
Q ss_pred HHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccc
Q 044420 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRN 201 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 201 (545)
|+..|+.+++++|+++|++++ .
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~-----------------------------------~----------------------- 108 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVN-----------------------------------A----------------------- 108 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-----------------------------------C-----------------------
T ss_pred HHHcCCHHHHHHHHHcCCCCC-----------------------------------C-----------------------
Confidence 999999999999999887521 1
Q ss_pred cchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHH
Q 044420 202 QGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~ 281 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus 109 --------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 155 (169)
T 2y1l_E 109 --------------------------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISID 155 (169)
T ss_dssp --------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred --------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 124567888888888899999999999999 88999999999999999
Q ss_pred hCchHHHHHHHhhc
Q 044420 282 HRHANIFNLIYEIG 295 (545)
Q Consensus 282 ~~~~~iv~~Ll~~g 295 (545)
+++.+++++|++.|
T Consensus 156 ~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 156 NGNEDLAEILQKLN 169 (169)
T ss_dssp TTCHHHHHHHHTC-
T ss_pred hCCHHHHHHHHHcC
Confidence 99999999999875
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2e-29 Score=225.45 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=149.6
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFA 88 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 88 (545)
+.||||.||..|+.+.++.|++ .+ ....+..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~--~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLR--KG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHT--TC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHH--cC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCchhhcccCCCHHHHH
Confidence 5689999999999999999999 44 44344789999999999999999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHH
Q 044420 89 VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKL 168 (545)
Q Consensus 89 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~l 168 (545)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+. ..+.++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~--~~~~~~ 153 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY--RKVQQV 153 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--HHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc--HHHHHH
Confidence 9999999999999999997 8999999999999999999999999999999999999999999999998876 467788
Q ss_pred HHhCCCcccccCCCCchH
Q 044420 169 LEDHSGLAVARDGNYETA 186 (545)
Q Consensus 169 L~~~~~~~~~~d~~g~tp 186 (545)
|.+++.+...++..|.||
T Consensus 154 L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHSCC-------
T ss_pred HHHHHHHHhcccCCCCCC
Confidence 888888888888888887
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=6.7e-30 Score=232.99 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=148.1
Q ss_pred ccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 73 DLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 73 ~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
.++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------- 95 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---------- 95 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT----------
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC----------
Confidence 56788999999999999999999999999999997 8899999999999999999999999999887521
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhh
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFT 232 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 232 (545)
.
T Consensus 96 -------------------------~------------------------------------------------------ 96 (192)
T 2rfm_A 96 -------------------------T------------------------------------------------------ 96 (192)
T ss_dssp -------------------------C------------------------------------------------------
T ss_pred -------------------------C------------------------------------------------------
Confidence 1
Q ss_pred hhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 233 DLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 233 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||
T Consensus 97 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~ 170 (192)
T 2rfm_A 97 -KDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTA 170 (192)
T ss_dssp -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBH
T ss_pred -CCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCH
Confidence 125568888888999999999999999999 899999999999999999999999999999999 78899999999
Q ss_pred hhhhccCCCCCccccccc
Q 044420 313 LHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 313 Lh~A~~~~~~~~~~~L~~ 330 (545)
||+|+..|+.+++++|.+
T Consensus 171 l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHh
Confidence 999999999999988753
No 65
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=5.6e-32 Score=270.95 Aligned_cols=266 Identities=12% Similarity=0.037 Sum_probs=174.4
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchh--hhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCC
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSI--LCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNG 81 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g 81 (545)
.+++||||.||+.|+.++|++|++ .+ .. .....+..|.||||+||+.|+.++|++|++ +|++ .+..+.+
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~--~g-a~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~- 163 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCL--LL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN- 163 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTT--C---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH-
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHH--cC-CcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC-
Confidence 345699999999999999999998 44 31 111334567889999999999999999998 6754 2222223
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCcccccC--CCCCCCcHHHHHH-HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTM--RGGENMTPLYMAA-VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 82 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
.||||+|+..|+.++|++|+++|+++ +. .|..|.||||+|+ .+|+.++|++|+++|++ +.||+++|+..
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~ 235 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEY 235 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHC
Confidence 89999999999999999999999986 54 7778899999999 99999999999987753 78888888776
Q ss_pred cCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCC
Q 044420 159 TDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKP 238 (545)
Q Consensus 159 ~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g 238 (545)
+.. + +.++|.+.+++++..+ ++++.|+..|+.+.+.... ......+++.++..+
T Consensus 236 g~~-e-vv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~---------~~~~~~~~~~li~~~----------- 289 (376)
T 2aja_A 236 GEK-Y-VNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSE---------CLQGFYMLRNLIRRN----------- 289 (376)
T ss_dssp TTT-T-HHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHH---------HHHHHHHHHHHHHHC-----------
T ss_pred CCH-H-HHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHh---------hhhhHHHHHHHHHcc-----------
Confidence 554 4 6677777777766554 4778888888776432100 000111222222222
Q ss_pred ChHHHHHHhcCcHHHHHHHHHHCCCc----ccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 239 SHLLFDAAELGNFEFLAELICSYPDL----VHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 239 ~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
..+..+.+++|++.+.-- .......+.||||+|+..|+.+++++|++.|.. +|..|+|++.
T Consensus 290 --------~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v-------~~~~~~~~~~ 354 (376)
T 2aja_A 290 --------DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV-------LALTKANNYY 354 (376)
T ss_dssp --------CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHH-------HHSCC-----
T ss_pred --------hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHH-------HHHHHHhccc
Confidence 123466777777643210 112234677999999999999999999987543 7899999999
Q ss_pred hhccCCCCCcccc
Q 044420 315 LAAKSPHPSRVSI 327 (545)
Q Consensus 315 ~A~~~~~~~~~~~ 327 (545)
+|-..|+.++.+.
T Consensus 355 ~~~~~~~~~~~~~ 367 (376)
T 2aja_A 355 INETGGRLDLRAV 367 (376)
T ss_dssp -------------
T ss_pred cccccccccHHHH
Confidence 9999999887755
No 66
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=5e-32 Score=271.30 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred CHHhHHHHH-cCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCCCcHH
Q 044420 10 CVPLQKAAL-KGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNGNTAF 85 (545)
Q Consensus 10 ~t~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpL 85 (545)
.++++.|+. .++.+.++++++ .+ .+++||||+|++.|+.++|++|++ .++. .+..|..|.|||
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~--~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~--~ga~~~~~~~~~~~~~tpL 132 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHK--KG---------IKSEVICFVAAITGCSSALDTLCL--LLTSDEIVKVIQAENYQAF 132 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHH--HT---------CCHHHHHHHHHHHCCHHHHHHHTT--C--CCSSCC--CHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHH--cC---------CCcCCHHHHHHHcCCHHHHHHHHH--cCCcHHHHHHhccCCCCHH
Confidence 345555555 355666666655 22 233477777777777777777777 4541 123344566777
Q ss_pred HHHHHhCCHHHHHHHHHcCccc--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERL--LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
|+|+..|+.++|++|+++|++. .+..+.+ .||||+|+..|+.++|++|+++|++++.
T Consensus 133 ~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~-------------------- 191 (376)
T 2aja_A 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEAT-------------------- 191 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHH--------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccch--------------------
Confidence 7777777777777777777531 0222222 6777777777777777777777765332
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHH-hCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLA-RKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpL 242 (545)
+.+|.+|.||||+|+ ..|+. ++ ++.|++.+ ..|.|||
T Consensus 192 -------------~~~d~~g~TpL~~Aa~~~G~~-----------------ei----v~~Ll~~g--------a~~~taL 229 (376)
T 2aja_A 192 -------------AMIQAENYYAFRWAAVGRGHH-----------------NV----INFLLDCP--------VMLAYAE 229 (376)
T ss_dssp -------------HHHHHHHHHHHHHHHSTTCCH-----------------HH----HHHHTTSH--------HHHHHHH
T ss_pred -------------hccCCCCCCHHHHHHHHCCCH-----------------HH----HHHHHhCC--------CccchHH
Confidence 004444556666666 55543 22 23333322 1245666
Q ss_pred HHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc---------------------------hHHHHHHHhhc
Q 044420 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH---------------------------ANIFNLIYEIG 295 (545)
Q Consensus 243 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~---------------------------~~iv~~Ll~~g 295 (545)
|.|+..|+.+++++|+++|++ ++..| ++++.|+.+|+ .+.+++|++.+
T Consensus 230 ~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~ 304 (376)
T 2aja_A 230 IHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304 (376)
T ss_dssp HCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred HHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence 666666666666666666555 33332 13333443333 34455555433
Q ss_pred cchhh-hhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 296 FTKEL-MATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 296 ~~~~~-~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
..... .....++.++||||+|++.|+.+++++|.+. ...++..|+||+++|..++.
T Consensus 305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----------------------~~v~~~~~~~~~~~~~~~~~ 361 (376)
T 2aja_A 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----------------------PSVLALTKANNYYINETGGR 361 (376)
T ss_dssp TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----------------------HHHHHSCC------------
T ss_pred hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----------------------hHHHHHHHHhcccccccccc
Confidence 21110 0122345688999999999999999998643 25678889999999876654
No 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=4.3e-30 Score=242.81 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 44 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
..|.||||.|++.|+.+.++.|++ +|++++. +..|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~--~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA--HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhc--cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 458888888888888888888888 7888875 467888888888888888888888888886 788888888888888
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccc
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 203 (545)
..|+.+++++|+++|++++ .
T Consensus 79 ~~g~~~~v~~Ll~~ga~~~-----------------------------------~------------------------- 98 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNVN-----------------------------------A------------------------- 98 (239)
T ss_dssp HHTCHHHHHHHHHHTCCTT-----------------------------------C-------------------------
T ss_pred HcCCHHHHHHHHHcCCCCC-----------------------------------c-------------------------
Confidence 8888888888888877521 1
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCC-cHHHHH--H
Q 044420 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNR-SIFHIA--V 280 (545)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A--~ 280 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+| +
T Consensus 99 ------------------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~ 147 (239)
T 1ycs_B 99 ------------------------------ADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEM 147 (239)
T ss_dssp ------------------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSS
T ss_pred ------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHh
Confidence 124567777777888888889999998888 788887776 999999 7
Q ss_pred HhCchHHHHHHHhhccchhhhhh------cccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccc
Q 044420 281 LHRHANIFNLIYEIGFTKELMAT------FKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFR 354 (545)
Q Consensus 281 ~~~~~~iv~~Ll~~g~~~~~~~n------~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~ 354 (545)
..|+.+++++|+++|++.+. .+ ..|..|.||++++.+.|. +++.+....-. +..|. ..
T Consensus 148 ~~g~~~~~~~Ll~~~a~~~~-~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~---~~~Ww----------~~ 211 (239)
T 1ycs_B 148 EEGYTQCSQFLYGVQEKMGI-MNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDED---EIEWW----------WA 211 (239)
T ss_dssp STTCCCHHHHHHHHHHHTTT-TGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTS---CSSEE----------EE
T ss_pred hhccHHHHHHHHHhhhcccc-cccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCC---CCCEE----------EE
Confidence 88899999999999888543 22 237889999999999885 55555321100 00010 12
Q ss_pred cccCCCCCChhhhhH
Q 044420 355 EMKNSEGKTPRELFS 369 (545)
Q Consensus 355 ~~~n~~G~Tpl~~a~ 369 (545)
...++.|.+|.++..
T Consensus 212 ~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 212 RLNDKEGYVPRNLLG 226 (239)
T ss_dssp EETTEEEEEEGGGEE
T ss_pred EECCcEEEeehHHee
Confidence 356788999998864
No 68
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=5e-29 Score=224.46 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=135.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 44 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+++.+|||.|+..|+.+++++|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 4577888888888888888888884 47778888888888888888888888888888888886 788888888888888
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccc
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 203 (545)
..|+.+++++|+++|++++ .
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~-----------------------------------~------------------------- 100 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADIN-----------------------------------A------------------------- 100 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTT-----------------------------------C-------------------------
T ss_pred HcCCHHHHHHHHHcCCCCC-----------------------------------c-------------------------
Confidence 8888888888888876521 1
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhC
Q 044420 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~ 283 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..+
T Consensus 101 ------------------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~ 149 (179)
T 3f6q_A 101 ------------------------------VNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPL 149 (179)
T ss_dssp ------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHH
T ss_pred ------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHH
Confidence 124567777777778888888888888888 8888999999999999999
Q ss_pred chHHHHHHHhhccchhhhhhcccCCC
Q 044420 284 HANIFNLIYEIGFTKELMATFKDHDQ 309 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~~~~~~n~~d~~G 309 (545)
+.+++++|+++|++ ++..+.++
T Consensus 150 ~~~~~~~L~~~g~~----~~~~~~~~ 171 (179)
T 3f6q_A 150 RELLRERAEKMGQN----LNRIPYKD 171 (179)
T ss_dssp HHHHHHHHHHTTCC----CSCBCCCC
T ss_pred HHHHHHHHHHhhcC----cccCCccc
Confidence 99999999999888 45555443
No 69
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.8e-29 Score=221.26 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=117.5
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+..||||.|++.|+.+++++|++ .+ .+++ ..|..|+||||+|+. |+.+++++|++ .|++++.+|..|.||||+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~--~~-~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ--NN-VNVN-AQNGFGRTALQVMKL-GNPEIARRLLL--RGANPDLKDRTGFAVIHD 76 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT--SC-CCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh--CC-CCcc-ccCccCccHHHHHHc-CcHHHHHHHHH--cCCCCCCCCCCCCCHHHH
Confidence 46799999999999999999999 56 5665 788999999999999 99999999999 799999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|++.|+.+++++|+++|++
T Consensus 77 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 128 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence 99999999999999999997 89999999999999999999999999999885
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4e-31 Score=247.78 Aligned_cols=185 Identities=18% Similarity=0.101 Sum_probs=165.3
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
....++.||||.||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga~~n~~d~~g~t 89 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK--EM-NDPS-QPNEEGITALHNAICGANYSIVDFLIT--AGANVNSPDSHGWT 89 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH--HS-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh--cC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCC
Confidence 455678899999999999999999999 56 6665 789999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHH--HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMA--AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
|||+|+..|+.+++++|+++|+++ +.++ .+|.||||+| +..|+.+++++|+++|++++..+..+.++++.++....
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~ 168 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc
Confidence 999999999999999999999998 6665 7999999999 99999999999999999988888888888887665543
Q ss_pred cHHHHHHHHHhCCCc--ccccCCCCchHHHHHHhCCCCcccc
Q 044420 161 LHDLALKLLEDHSGL--AVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 161 ~~~~~~~lL~~~~~~--~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
. +++.+.|.+ ++.+|.+|+||||+|+..|+.+.++
T Consensus 169 ~-----~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 169 D-----ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp T-----BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred c-----ccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 3 566777887 6788999999999999999887653
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=5.4e-29 Score=221.04 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
|.+|.||||.|++.|+.++++.|++. .+.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 45566666666666666666666664 44555666666666666666666666666666666665 56666666666666
Q ss_pred HHcCCHHHHHHHHHcccC
Q 044420 123 AVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~ 140 (545)
+..|+.+++++|+++|++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~ 100 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV 100 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCcHHHHHHHHhCCCC
Confidence 666666666666666553
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.5e-28 Score=213.85 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=58.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC
Q 044420 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA 126 (545)
Q Consensus 47 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 126 (545)
.||||.|++.|+.+++++|++ .+.+++ .|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 456666666666666666666 455554 3556666666666666666666666666665 566666666666666666
Q ss_pred CHHHHHHHHHcccC
Q 044420 127 QRDMALYLYDDAKA 140 (545)
Q Consensus 127 ~~~iv~~Ll~~~~~ 140 (545)
+.+++++|+++|++
T Consensus 79 ~~~~v~~Ll~~g~~ 92 (153)
T 1awc_B 79 HANIVEVLLKHGAD 92 (153)
T ss_dssp CHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHcCCC
Confidence 66666666666553
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=2.4e-28 Score=219.98 Aligned_cols=169 Identities=14% Similarity=0.072 Sum_probs=152.6
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.++.++||.||..|+.++++.|++ ..+ .+++ ..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~-~~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLD-NTE-NDLN-QGDDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHH-CTT-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh-cCc-cccc-ccCCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCCHHH
Confidence 468899999999999999999999 444 4454 789999999999999999999999999 89999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLAL 166 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~ 166 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+. ..+.
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~--~~~~ 154 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR--ELLR 154 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHH--HHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHH--HHHH
Confidence 999999999999999999997 8999999999999999999999999999999999999999999999977654 5778
Q ss_pred HHHHhCCCcccccCCCC
Q 044420 167 KLLEDHSGLAVARDGNY 183 (545)
Q Consensus 167 ~lL~~~~~~~~~~d~~g 183 (545)
++|.+.|++++..+..+
T Consensus 155 ~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 155 ERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHTTCCCSCBCCCC
T ss_pred HHHHHhhcCcccCCccc
Confidence 89999999988776654
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=3.5e-28 Score=213.63 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
+.||||.|+..|+.++++.|++. .+.+++.+|..|.||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 45677777777777777777763 344666677777777777 6667777777777777765 66667777777777777
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL 205 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 205 (545)
|+.+++++|+++|++++ .+
T Consensus 79 ~~~~~v~~Ll~~g~~~~-----------------------------------~~-------------------------- 97 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVN-----------------------------------VP-------------------------- 97 (156)
T ss_dssp TCHHHHHHHHHTTCCSC-----------------------------------CC--------------------------
T ss_pred CcHHHHHHHHHcCCCCC-----------------------------------Cc--------------------------
Confidence 77777777776665411 11
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 206 TRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 206 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
|..|.||||+|+..|+.+++++|++. ++ ++.+|.+|+||||+|+..|+.
T Consensus 98 -----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~ 146 (156)
T 1bd8_A 98 -----------------------------DGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQ 146 (156)
T ss_dssp -----------------------------CTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCH
T ss_pred -----------------------------CCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcH
Confidence 13445666666666666667777666 55 666677777777777777777
Q ss_pred HHHHHHHhh
Q 044420 286 NIFNLIYEI 294 (545)
Q Consensus 286 ~iv~~Ll~~ 294 (545)
+++++|+++
T Consensus 147 ~~v~~Ll~~ 155 (156)
T 1bd8_A 147 DLVDILQGH 155 (156)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 777777653
No 75
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3.2e-28 Score=216.49 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=142.6
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|.||||.||..|+.+++++|++ .+ .+++ ..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QE-NVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HS-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cC-CCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCcCCCCCcHHHH
Confidence 58999999999999999999999 55 5555 789999999999999999999999999 799999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+.. + +.+
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~-~~~ 152 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR-S-VQQ 152 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-H-HHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH-H-HHH
Confidence 99999999999999999997 89999999999999999999999999999999888899999999999887653 4 445
Q ss_pred HHHhCC
Q 044420 168 LLEDHS 173 (545)
Q Consensus 168 lL~~~~ 173 (545)
+|.+++
T Consensus 153 ~L~~~~ 158 (167)
T 3v31_A 153 VIESHL 158 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 76
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.2e-27 Score=213.25 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=142.1
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
....+.+|||.||+.|+.+++++|++ ++ .+++ ..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~ 83 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMA--NG-ADVN-AEDASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTP 83 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCH
Confidence 34557899999999999999999999 66 6665 788999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+. . .
T Consensus 84 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~-~ 160 (169)
T 2y1l_E 84 LRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN-E-D 160 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-H-H
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC-H-H
Confidence 99999999999999999999997 8999999999999999999999999999999988888899999999887655 2 4
Q ss_pred HHHHHHhC
Q 044420 165 ALKLLEDH 172 (545)
Q Consensus 165 ~~~lL~~~ 172 (545)
+.++|.+.
T Consensus 161 ~~~~L~~~ 168 (169)
T 2y1l_E 161 LAEILQKL 168 (169)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHc
Confidence 44555544
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=8e-28 Score=213.45 Aligned_cols=160 Identities=21% Similarity=0.203 Sum_probs=141.6
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+.+|.||||.|++.|+.+.++.|++ ..+ ... ...+..|.||||+|+..|+.+++++|++ .+++++.+|..|.|||
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~-~~~-~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L 79 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCT-VQS-VNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKDKGGLVPL 79 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCC-TTT-TTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHH-cCC-CCc-cccccCCCCHHHHHHHcChHHHHHHHHh--cCCCCCccCCCCCCHH
Confidence 5678999999999999999999999 333 333 3678889999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+. +.. .+
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~--~~~-~i 155 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD--GDT-DI 155 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT--TCH-HH
T ss_pred HHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc--CCh-HH
Confidence 9999999999999999999997 8999999999999999999999999999999999999999999999654 443 55
Q ss_pred HHHHHhCCC
Q 044420 166 LKLLEDHSG 174 (545)
Q Consensus 166 ~~lL~~~~~ 174 (545)
.++|.+.|+
T Consensus 156 ~~~L~~~gA 164 (165)
T 3twr_A 156 QDLLRGDAA 164 (165)
T ss_dssp HHHHHTC--
T ss_pred HHHHhhccc
Confidence 666666654
No 78
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.7e-27 Score=208.51 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=131.8
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
|..+|||.|++.|+.+++++|++ .+ .+.+ .+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~--~g-~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMA--NG-APFT--TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHM 73 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH--HT-CCCC--CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHH--cC-CCCC--cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHH
Confidence 35689999999999999999999 44 4443 58899999999999999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+.
T Consensus 74 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999999999997 8999999999999999999999999999999877777777777777776654
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.9e-28 Score=230.25 Aligned_cols=181 Identities=16% Similarity=0.095 Sum_probs=129.5
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..|.||||.|++.|+.+.++.|++ ++ .+++ .+..|.||||.|+..|+.+++++|++ .+++++.+|..|.||||
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~--~g-~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA--HG-MRVK--FNPLPLALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALH 75 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhc--cC-CCcc--cCchhhHHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHH
Confidence 469999999999999999999999 67 6665 45789999999999999999999999 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCCh-hhHHHHH-HhcCcHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQ-NALFFTC-ISTDLHDL 164 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-t~l~~aa-~~~~~~~~ 164 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..+. ||+|.|. ...++. .
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~-~ 153 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT-Q 153 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC-C
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH-H
Confidence 999999999999999999997 89999999999999999999999999999999999998887 9999883 233443 4
Q ss_pred HHHHHHhCCCccccc---------CCCCchHHHHHHhCCCC
Q 044420 165 ALKLLEDHSGLAVAR---------DGNYETALHVLARKPSA 196 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~---------d~~g~tpLh~A~~~~~~ 196 (545)
+.++|.+.+++++.. +..+.++++++...|..
T Consensus 154 ~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 154 CSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC 194 (239)
T ss_dssp HHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred HHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence 456666667666654 66788888888888853
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=6.9e-27 Score=205.31 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=136.0
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
++.||||.||+.|+.+.++.|++ ..+ .+++ ..|..|+||||+ +..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~-~~~-~~~~-~~~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLH-REL-VHPD-ALNRFGKTALQV-MMFGSTAIALELLK--QGASPNVQDTSGTSPVHD 74 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-TTC-CCTT-CCCTTSCCHHHH-SCTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHH-hhC-cCcc-ccCCCCCcHHHH-HHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHH
Confidence 36799999999999999999999 333 3444 789999999999 99999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++ ++++..+..|.||+++|+..+. .+.+..
T Consensus 75 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~-~~~v~~ 151 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA-QDLVDI 151 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC-HHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc-HHHHHH
Confidence 99999999999999999997 89999999999999999999999999999 8878888888888888887654 344444
Q ss_pred HH
Q 044420 168 LL 169 (545)
Q Consensus 168 lL 169 (545)
++
T Consensus 152 Ll 153 (156)
T 1bd8_A 152 LQ 153 (156)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=2.1e-26 Score=197.26 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=118.5
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC-CCc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN-GNT 83 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~T 83 (545)
.+.+|.||||.|++.|+.+++++|++ .+ .+++ .+|..|+||||+|+. |+.+++++|++ .+++++.+|.. |.|
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLLE--AG-ADPN-ALNRFGRRPIQVMMM-GSAQVAELLLL--HGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHH--HTCCSSCCBTTTTBC
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHHH--cC-CCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHH--CCCCCCCcCCCCCCC
Confidence 45679999999999999999999999 56 6665 778999999999999 99999999999 79999999999 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999997 89999999999999999999999999999874
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=2e-26 Score=208.14 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=120.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcHHHHHHHhCCH----HHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTAFCFAVAAGSI----HIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
+.++||.|++.|+.+.++.+++ .+ ++.++ ..|+||||+|+.+|+. +++++|+++|+++ +.+|.+|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~--~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE--KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH--HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHh--cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 4567777888888777777776 22 34445 6677888888877764 4778888888876 777777888888
Q ss_pred HHHHcCC------HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCc-hHHHHHHhC
Q 044420 121 MAAVLAQ------RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE-TALHVLARK 193 (545)
Q Consensus 121 ~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~-tpLh~A~~~ 193 (545)
+|+..|+ .+++++|+++|+ +++.+|.+|. ||||+|+..
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Ga-----------------------------------din~~d~~g~ttpLh~A~~~ 125 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGA-----------------------------------DITALYKPYKIVVFKNIFNY 125 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-----------------------------------CSSSCBGGGTBCTTGGGGGC
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCC-----------------------------------CCCccCCCcCchHHHHHHHc
Confidence 8877776 355666665555 4667788888 888888875
Q ss_pred CCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH-HCCCcccccccCC
Q 044420 194 PSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-SYPDLVHELDDNN 272 (545)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G 272 (545)
+.. ..++.+++++|++ +|++ ++.+|..|
T Consensus 126 ~~~--------------------------------------------------~~~~~~iv~~Ll~~~gad-~~~~d~~G 154 (186)
T 3t8k_A 126 FVD--------------------------------------------------ENEMIPLYKLIFSQSGLQ-LLIKDKWG 154 (186)
T ss_dssp CSC--------------------------------------------------HHHHHHHHHHHHTSTTCC-TTCCCTTS
T ss_pred CCC--------------------------------------------------hhhHHHHHHHHHHhcCCC-CcccCCCC
Confidence 421 0134678899999 8999 89999999
Q ss_pred CcHHHHHHHhCchHHHHHHHhhccc
Q 044420 273 RSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 273 ~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
+||||+|++.++.+++++|.+....
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999987655
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.8e-26 Score=202.76 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=111.6
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc-
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT- 83 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T- 83 (545)
....|.||||+||+.|+.+++++|++ .+ .+++ ..|..|+||||+|+ .|+.+++++|++ .|++++.+|..|.|
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLE--AG-ANPN-APNSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLTR 80 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHT--TT-CCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCCC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHH--cC-CCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHH--cCCCCCCcCCCCCcH
Confidence 45668999999999999999999998 56 6665 67889999999985 899999999998 78999999999998
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALF 153 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~ 153 (545)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.+|..
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999999999999999999999997 889999999999999999999999999999886666666666544
No 84
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=8.7e-26 Score=193.42 Aligned_cols=129 Identities=22% Similarity=0.173 Sum_probs=117.6
Q ss_pred CcccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCC
Q 044420 3 RNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGN 82 (545)
Q Consensus 3 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 82 (545)
......+.||||+||+.|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~ 81 (136)
T 2jab_A 8 HHHGSDLGKKLLEAARAGQDDEVRILMA--NG-ADVN-AKDEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDAIGF 81 (136)
T ss_dssp ----CHHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCC
T ss_pred CcccccccHHHHHHHHhCCHHHHHHHHH--cC-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCC
Confidence 3456678999999999999999999999 56 6665 788999999999999999999999999 7999999999999
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 044420 83 TAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA 138 (545)
Q Consensus 83 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 138 (545)
||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999997 899999999999999999999999999876
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=7.1e-26 Score=193.96 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=91.9
Q ss_pred CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 71 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+. |+.+++++|+++|++++.
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~------- 72 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC------- 72 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-------
Confidence 3566667777777777777777777777777777765 6667777777777777 777777777776654211
Q ss_pred hHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchh
Q 044420 151 ALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSE 230 (545)
Q Consensus 151 ~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 230 (545)
T Consensus 73 -------------------------------------------------------------------------------- 72 (136)
T 1d9s_A 73 -------------------------------------------------------------------------------- 72 (136)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccC-CChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 231 FTDLIRK-PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 231 ~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
.|.. |.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|+|
T Consensus 73 ---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 73 ---ADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp ---CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred ---cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1133 56666666666677777777777777 677777777777777777777777777777654
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=1.3e-26 Score=209.34 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=134.8
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCcccccccCCCC
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQT----GFVEELLKLMKPEDLTLQDRNGN 82 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~ 82 (545)
..++++||.||+.|+.+.++.+++ . ..+...+..|+||||+|+..|+. +++++|++ +|+++|.+|..|+
T Consensus 4 ~~~~~~l~~Aa~~g~~~~~~~l~~-~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~ 76 (186)
T 3t8k_A 4 MSEYRTVSAAAMLGTYEDFLELFE-K----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN--KGADIKSRTKEGT 76 (186)
T ss_dssp HHHCSSHHHHHHHSCHHHHHHHHH-H----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCCSSCCCTTCC
T ss_pred cccccHHHHHHHcCCHHHHHHHHh-c----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCCCCCCCCCCC
Confidence 457899999999999999999998 2 22322236799999999999985 59999999 8999999999999
Q ss_pred cHHHHHHHhCC------HHHHHHHHHcCcccccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cccCCccCCCCCh
Q 044420 83 TAFCFAVAAGS------IHIAKIMLKKNERLLTMRGGENM-TPLYMAAVLA-----QRDMALYLYD-DAKAKDNLTPEDQ 149 (545)
Q Consensus 83 TpLh~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~~ 149 (545)
||||+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.+++++|++ +|++++..+..|.
T Consensus 77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~ 155 (186)
T 3t8k_A 77 TLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155 (186)
T ss_dssp CTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSC
T ss_pred cHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCC
Confidence 99999999987 68999999999998 99999999 9999999944 4568999999 9999888888888
Q ss_pred hhHHHHHHhcCcHHHHHHHHHhCCCccc
Q 044420 150 NALFFTCISTDLHDLALKLLEDHSGLAV 177 (545)
Q Consensus 150 t~l~~aa~~~~~~~~~~~lL~~~~~~~~ 177 (545)
||||+|+..+. ..+.++|.++....+
T Consensus 156 TpL~~A~~~~~--~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 156 TALEFVKRCQK--PIALKMMEDYIKKYN 181 (186)
T ss_dssp CHHHHHHTTTC--HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence 99988887655 345566665443333
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=3.8e-25 Score=186.33 Aligned_cols=126 Identities=27% Similarity=0.338 Sum_probs=119.0
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|+||||.|++.|+.+++++|++ ++ .+++ ..+..|.||||+|+..|+.+++++|++ .+++++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~-~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE--AG-ADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH--HT-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH--cC-CCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCcHHHH
Confidence 58999999999999999999999 55 5555 678999999999999999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999997 89999999999999999999999999999974
No 88
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=4.2e-26 Score=216.00 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=104.4
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.+.+++..++..|+.+.++.+.. .+ . ..+.+|.||||+|++.|+.++++.|++ +++++.+|..|.||||+
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~--~~-~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~ 83 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSY--IA-A----DVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLF 83 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGG--SC-H----HHHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHH
T ss_pred CCccHHHHHHHcCCCcccccccc--cc-c----ccccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHH
Confidence 45566666677777666655554 33 2 234679999999999999999999997 78999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++|++
T Consensus 84 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 136 (244)
T 3ui2_A 84 VAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136 (244)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 99999999999999999997 6676 8899999999999999999999999876
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=5.1e-26 Score=205.51 Aligned_cols=167 Identities=20% Similarity=0.181 Sum_probs=135.1
Q ss_pred HHHHcCChHHHHHhhcCCCCchh--------hhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 15 KAALKGNWPTAKHLLGNEDPRSI--------LCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 15 ~Aa~~g~~~~v~~Ll~~~~~~~~--------~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.|++.|..+.+++|++...+ .. .....+.+|+||||+|++.|+.++++.|++ +++++.+|..|.||||
T Consensus 6 ~aa~~~~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~ 81 (183)
T 3deo_A 6 IGSRTAGEGAMEYLIEWKDG-HSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALL 81 (183)
T ss_dssp EEEEEETTTEEEEEEEETTC-CCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHH
T ss_pred HHHHhcCCchhHHHHHHhCC-CCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHH
Confidence 35566777777777752121 11 011235689999999999999999999997 7899999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++|++
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------------------- 135 (183)
T 3deo_A 82 FVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------------------- 135 (183)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-------------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-------------------------
Confidence 999999999999999999997 6677 8999999999999999999999999876
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
++.+|.+|.||||+|++.++. ..+.+||++|
T Consensus 136 ----------~~~~d~~g~tpl~~A~~~~~~---------------------------------------~~~~~~l~~a 166 (183)
T 3deo_A 136 ----------IEVEDERGLTALELAREILKT---------------------------------------TPKGNPMQFG 166 (183)
T ss_dssp ----------TTCCCTTSCCHHHHHHHHHHT---------------------------------------CCCCSHHHHH
T ss_pred ----------CcCCCCCCCCHHHHHHHhccC---------------------------------------cccccHHHHH
Confidence 346677777777777765422 3457888888
Q ss_pred HhcCcHHHHHHHHHH
Q 044420 246 AELGNFEFLAELICS 260 (545)
Q Consensus 246 ~~~g~~~~v~~Ll~~ 260 (545)
+..|+.++++.|.++
T Consensus 167 ~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 167 RRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHcCHHHHHHHHHHh
Confidence 888888888888754
No 90
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=7.5e-25 Score=192.33 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=117.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCc-HH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMT-PL 119 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL 119 (545)
..+..|.||||+|++.|+.+++++|++ .|++++.+|..|.||||+|+ .|+.+++++|+++|+++ +.+|..|.| ||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL 82 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPV 82 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence 457889999999999999999999999 79999999999999999985 99999999999999997 899999999 99
Q ss_pred HHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHH
Q 044420 120 YMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLA 191 (545)
Q Consensus 120 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~ 191 (545)
|+|+..|+.+++++|+++|++++..+..|.||||+|+..+. ..+.++|.++|++++.+|..|.||.+.+.
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH--RDVARYLRAAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHSSCC------------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH--HHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence 99999999999999999999999999999999999998865 36778888999999999999999987543
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=2.2e-23 Score=175.42 Aligned_cols=93 Identities=26% Similarity=0.382 Sum_probs=89.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
+|+||||+|++.|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 58999999999999999999999 79999999999999999999999999999999999997 8899999999999999
Q ss_pred cCCHHHHHHHHHcccC
Q 044420 125 LAQRDMALYLYDDAKA 140 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~ 140 (545)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~ 93 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGAD 93 (126)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHcCCC
Confidence 9999999999998876
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=1.3e-24 Score=186.40 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=84.9
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|+||||.||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ--NG-SDPN-VKDHAGWTPLHEACNHGHLKVVELLLQ--HKALVNTTGYQNDS 78 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH--TT-CCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCGGGCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCcccCcCCCCCC
Confidence 345566777777777777777777776 44 4444 556667777777777777777777776 56777777777777
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA 138 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 138 (545)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+..+++++|.+.+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 777777777777777777777765 666777777777777666666666655544
No 93
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=5.1e-23 Score=176.10 Aligned_cols=127 Identities=21% Similarity=0.240 Sum_probs=113.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
.....|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~ 85 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLH 85 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHH
Confidence 345678999999999999999999999 79999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhC
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDH 172 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~ 172 (545)
+|+..|+.+++++|+++|++++..+..|.||+++|+..+.. + +.++|.++
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~-~-~~~~Ll~~ 135 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE-D-LAEILQKL 135 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-H-HHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH-H-HHHHHHHc
Confidence 99999999999999999999888888999999998877653 4 44555544
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.6e-23 Score=175.85 Aligned_cols=109 Identities=23% Similarity=0.242 Sum_probs=73.5
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.|.||||.|+..|+.++++.|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~--~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVA--KG-EDVN-RTLEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLLS 79 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH--TT-CCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHT--TTCCTTCCCTTSCCHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH--cC-CCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHH
Confidence 45667777777777777777776 44 4443 556667777777777777777777776 566777777777777777
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|.
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence 77777777777777777665 666677777777664
No 95
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.2e-23 Score=196.07 Aligned_cols=131 Identities=24% Similarity=0.236 Sum_probs=104.9
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+.+|.||||.||..|+.++++.|++ .+ .+++ .+|..|+||||+||..|+.++|++|++. .|++++.+|..|+|||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLD--NR-VGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTAL 144 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccCcHHHHHHHHh--CC-CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCHH
Confidence 3467889999999999999999998 55 5555 6788899999999999999999999983 3888999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCc
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKD 142 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~ 142 (545)
|+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.++++.|++.+++..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 9999999999999999999987 8889999999999999999999999988887643
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=4e-23 Score=201.33 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=95.9
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCCC
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAG-----IAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTLQDRNG 81 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-----~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g 81 (545)
.++||.|+..|+.+.++.|++ .+ .+++.. .+..|+||||+|+.. |+.+++++|++ .|++++.+|..|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~--~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadvn~~d~~G 226 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFA--NG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADG 226 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--TT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSCTTCCCTTC
T ss_pred HHHHhhhhhccCHHHHHHHHh--cC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCCCCCCCCCC
Confidence 456888888888888888877 44 444421 467788888888876 77888888887 677888888888
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 82 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 88888888888888888888888886 77788888888888888888888888877763
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=4.2e-23 Score=176.87 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=108.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 578999999999999999999999999 89999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
+|+..|+.+++++|+++|++++..+..|.||+++|+..
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence 99999999999999999999888888888888887654
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=195.52 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=63.4
Q ss_pred ccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 235 IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 235 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
|.+|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+++|++ .|+||||
T Consensus 223 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~g~tpLh 291 (301)
T 2b0o_E 223 AADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG----------TFAFPLH 291 (301)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------TTSSCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------CCCChhH
Confidence 36678888888889999999999999999 999999999999999999999999999998865 4899999
Q ss_pred hhccCCCC
Q 044420 315 LAAKSPHP 322 (545)
Q Consensus 315 ~A~~~~~~ 322 (545)
+|+..|+.
T Consensus 292 ~A~~~g~~ 299 (301)
T 2b0o_E 292 VDYSWVIS 299 (301)
T ss_dssp --------
T ss_pred HHHhcCCc
Confidence 99998864
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=2.5e-22 Score=168.55 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=102.1
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
.+..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS 79 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHH--cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 35678999999999999999999999 79999999999999999999999999999999999997 8999999999999
Q ss_pred HHHcCCHHHHHHHHHcccCCccCCCCChhhHHHH
Q 044420 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~a 155 (545)
|+..|+.+++++|+++|++++..+..|.||+++|
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 9999999999999999998877788888888877
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.6e-22 Score=182.54 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=119.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
+.+|.||||.||+.|+.++++.|++ + .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+| ..|+||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~-~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---D-RDVD-AVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---T-SCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---c-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCCH
Confidence 4578999999999999999999998 2 4444 688999999999999999999999999 899999998 889999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|++.++. ..+.+++++++..+. ..
T Consensus 114 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~--~~ 173 (183)
T 3deo_A 114 LHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGL--EK 173 (183)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHH--HH
T ss_pred HHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCH--HH
Confidence 99999999999999999999997 89999999999999975433 344677777776643 34
Q ss_pred HHHHHHh
Q 044420 165 ALKLLED 171 (545)
Q Consensus 165 ~~~lL~~ 171 (545)
+.++|.+
T Consensus 174 i~~~L~~ 180 (183)
T 3deo_A 174 VINVLEG 180 (183)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555554
No 101
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=5.4e-22 Score=157.57 Aligned_cols=93 Identities=26% Similarity=0.375 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
+|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 48999999999999999999999 79999999999999999999999999999999999997 8899999999999999
Q ss_pred cCCHHHHHHHHHcccC
Q 044420 125 LAQRDMALYLYDDAKA 140 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~ 140 (545)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999874
No 102
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=3.5e-22 Score=188.97 Aligned_cols=140 Identities=20% Similarity=0.187 Sum_probs=120.8
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
+.+|.||||.||+.|+.++++.|++ + .+++ .+|..|+||||+||..|+.++|++|++ +|++++.+| ..|.||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~-~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---D-RDVD-AVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---T-CCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---C-CCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCcCCCCCCCCH
Confidence 3478999999999999999999998 2 4444 688999999999999999999999999 899999998 889999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++ ...+.+|+++++..+.. .
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~--~ 174 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLE--K 174 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHH--H
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChH--H
Confidence 99999999999999999999997 8999999999999986322 24567899998877643 4
Q ss_pred HHHHHHhC
Q 044420 165 ALKLLEDH 172 (545)
Q Consensus 165 ~~~lL~~~ 172 (545)
+.++|.+.
T Consensus 175 iv~~L~~~ 182 (244)
T 3ui2_A 175 VINVLEGQ 182 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.8e-22 Score=186.82 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=129.3
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCC-------------CchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNED-------------PRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPED 73 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~-------------~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~ 73 (545)
.+++++.+.+.+.|+...+..+.+ .. + .......+.+|.||||+||..|+.+++++|++ .|++
T Consensus 23 ~~~~~~~el~~~~Gd~~~v~~~~~-~~w~~~~~~g~~gl~p-~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~ 98 (222)
T 3ehr_A 23 FEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP-SNYVAEQAESIDNPLHEAAKRGNLSWLRECLD--NRVG 98 (222)
T ss_dssp CCCSSTTBCCCCTTCEEEEEECCS-SSEEEEEETTEEEEEE-HHHHHHHEEEESCHHHHHHHHTCHHHHHHHHH--TTCC
T ss_pred cCCCCCCcccccCCCEEEEecccc-chhHhcccCCcceeec-hhhccccccccccccccccccCcHHHHHHHHh--CCCC
Confidence 455666777777777655544433 10 1 12223457789999999999999999999999 8999
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 74 LTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 74 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
++.+|..|.||||+|+..|+.++|++|++. |+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+
T Consensus 99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 177 (222)
T 3ehr_A 99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177 (222)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHH
Confidence 999999999999999999999999999999 9997 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCCCC
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDGNY 183 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g 183 (545)
++|+..+. ..+.+.+...++..+.++.+|
T Consensus 178 ~~A~~~~~--~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 178 DMATNAAC--ASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHCCSHHH--HHHHC----------------
T ss_pred HHhcchhH--HHHHHHHhccchhhhccchhh
Confidence 99987543 345566666676666555444
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.5e-21 Score=187.98 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=115.6
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhh-----hccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCC
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILC-----AGIAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
..++|+.|+..|+.+.++.+++ .+ .+++ +..+..|+||||+|+.. |+.+++++|++ +|+++|.+|..
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~--~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~in~~d~~ 204 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYA--DG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGK 204 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH--TT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTT
T ss_pred hhhhhhhHhhhcccHHHHHHHH--hh-cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH--CCCCccccCCC
Confidence 4578999999999999999998 45 4432 23478899999999999 89999999999 79999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999997 89999999999999999999999999999985
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=1.8e-21 Score=194.06 Aligned_cols=126 Identities=22% Similarity=0.191 Sum_probs=115.9
Q ss_pred cCCHHhHHHHHc-CChHHHHHhhcCCCCchhhhhccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 8 NICVPLQKAALK-GNWPTAKHLLGNEDPRSILCAGIA--KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 8 ~~~t~L~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.|+||.|+.. |+.++++.|++ ++ .+++ ..+ ..|.||||+|+..|+.+++++|++ +|++++.+|..|+||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~--~G-advn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALA--HG-ADVN-WVNGGQDNATPLIQATAANSLLACEFLLQ--NGANVNQADSAGRGP 271 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHH--TT-CCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHH--cC-CCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCCCCH
Confidence 456899999999 99999999999 66 6666 556 889999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+..
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999999999999999997 89999999999999999999999999988753
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=6.3e-21 Score=183.64 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=113.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccc-----cCCCCCCCcHHHHHHHc---CCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLL-----TMRGGENMTPLYMAAVL---AQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
..++|+.|+..|+.+.++.+++.|+++. +..|..|.||||+|+.. |+.+++++|+++|++++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in---------- 199 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD---------- 199 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT----------
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc----------
Confidence 4578888999999988888888888742 34578888999999888 88888888888887521
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhh
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFT 232 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 232 (545)
.
T Consensus 200 -------------------------~------------------------------------------------------ 200 (278)
T 1dcq_A 200 -------------------------K------------------------------------------------------ 200 (278)
T ss_dssp -------------------------C------------------------------------------------------
T ss_pred -------------------------c------------------------------------------------------
Confidence 1
Q ss_pred hhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 233 DLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 233 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++ .++
T Consensus 201 -~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~ 266 (278)
T 1dcq_A 201 -QTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG------------RFN 266 (278)
T ss_dssp -CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT------------CCC
T ss_pred -cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCC
Confidence 235678888888888999999999999999 999999999999999999999999999998874 467
Q ss_pred hhhhccCC
Q 044420 313 LHLAAKSP 320 (545)
Q Consensus 313 Lh~A~~~~ 320 (545)
+|.++.+.
T Consensus 267 ~~~~v~~~ 274 (278)
T 1dcq_A 267 SHVHVEYE 274 (278)
T ss_dssp SSCCCCCC
T ss_pred cceeeecc
Confidence 77776653
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=3.6e-21 Score=201.31 Aligned_cols=136 Identities=16% Similarity=0.113 Sum_probs=114.7
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhc-----cCCCCCcHHHHHHH---cCCHHHHHHHHHcCCCcccccccCCC
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAG-----IAKGYETLLHLAAG---ARQTGFVEELLKLMKPEDLTLQDRNG 81 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-----~~~~g~T~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~d~~g 81 (545)
.+.||.|+..|+.+.|+.|++ .+ .+++.. .+..|+||||+||. .|+.++|++|++ +|+++|.+|..|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~--~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~--~ga~vn~~d~~g 207 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFA--NG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADG 207 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--TT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH--HSCCTTCCCSSS
T ss_pred HHHHHHHHhccCHHHHHHHHh--hc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH--cCCCCCccCCCC
Confidence 367999999999999999999 66 665522 27889999999976 999999999999 799999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHH
Q 044420 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCI 157 (545)
Q Consensus 82 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~ 157 (545)
+||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 99999999999999999999999997 89999999999999999999999999999997554 46665543
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=7.8e-21 Score=150.79 Aligned_cols=93 Identities=30% Similarity=0.368 Sum_probs=86.7
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|+||||+|+..|+.+++++|++ .+ .+++ .+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g-~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AG-ADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cC-CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHH
Confidence 58999999999999999999999 66 6666 789999999999999999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcc
Q 044420 88 AVAAGSIHIAKIMLKKNER 106 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~ 106 (545)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999974
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=2.8e-21 Score=160.00 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=93.7
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
.+|.+|+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 467889999999999999999999998 78899999999999999999999999999999999987 788899999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhh
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNA 151 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 151 (545)
+|+..|+.+++++|+++|++++..+..+.+|
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 9999999999999999998876666666554
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=2.5e-20 Score=185.75 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=110.7
Q ss_pred cCCCCcHHHHHHHh-CCHHHHHHHHHcCcccccCCC--CCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHH
Q 044420 78 DRNGNTAFCFAVAA-GSIHIAKIMLKKNERLLTMRG--GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFF 154 (545)
Q Consensus 78 d~~g~TpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~ 154 (545)
+..+.||||.|+.. |+.++++.|+++|+++ +..+ ..|.||||+|+..|+.+++++|+++|++++
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn------------ 262 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN------------ 262 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence 34566899999999 9999999999999997 7777 889999999999999999999999887522
Q ss_pred HHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhh
Q 044420 155 TCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDL 234 (545)
Q Consensus 155 aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 234 (545)
. .
T Consensus 263 -----------------------~-------------------------------------------------------~ 264 (368)
T 3jue_A 263 -----------------------Q-------------------------------------------------------A 264 (368)
T ss_dssp -----------------------C-------------------------------------------------------C
T ss_pred -----------------------C-------------------------------------------------------C
Confidence 1 2
Q ss_pred ccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 235 IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 235 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++.+.... .....+..+.|+++
T Consensus 265 d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~-~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 265 DSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREA-EAAQGQAGDETYLD 342 (368)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-cccccCCCCCCHHH
Confidence 25568888888888999999999999999 89999999999999999999999999998875432 14456778889998
Q ss_pred hhccCC
Q 044420 315 LAAKSP 320 (545)
Q Consensus 315 ~A~~~~ 320 (545)
++....
T Consensus 343 i~~~~~ 348 (368)
T 3jue_A 343 IFRDFS 348 (368)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887653
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=7.5e-20 Score=191.32 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=63.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccc------cCCCCcHHHHHHH---hCCHHHHHHHHHcCcccccCCCCCCCc
Q 044420 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQ------DRNGNTAFCFAVA---AGSIHIAKIMLKKNERLLTMRGGENMT 117 (545)
Q Consensus 47 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~t 117 (545)
.+.||.|+..|+.+.|+.|++ .|+++|.. |..|.||||+||. .|+.++|++|+++|+++ +.+|.+|.|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~--~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred HHHHHHHHhccCHHHHHHHHh--hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 356777777777777777777 56776665 6667777777755 66777777777777775 667777777
Q ss_pred HHHHHHHcCCHHHHHHHHHcccC
Q 044420 118 PLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 118 pL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|||+|+..|+.+++++|+++|++
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~ 232 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRAL 232 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Confidence 77777777777777777776665
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.3e-20 Score=154.48 Aligned_cols=108 Identities=27% Similarity=0.261 Sum_probs=98.4
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|+||||.||..|+.++++.|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g-~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLS--KG-ADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA--KGADVNARSKDGNTP 78 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTT--TT-CCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTT--TTCCTTCCCTTCCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCCH
Confidence 45679999999999999999999999 56 6665 688999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
||+|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 99999999999999999999997 88899998873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=1.2e-18 Score=142.84 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=85.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
..|.+|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~ 95 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD 95 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence 578899999999999999999999999 79999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHH
Q 044420 121 MAAVLAQRDMALYL 134 (545)
Q Consensus 121 ~A~~~g~~~iv~~L 134 (545)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2.2e-17 Score=135.19 Aligned_cols=91 Identities=27% Similarity=0.306 Sum_probs=83.1
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|.||||.||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~--~ga~~~~~d~~g~t 92 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMA--NG-ADVA-AKDKNGSTPLHLAARNGHLEVVKLLLE--AGADVXAQDKFGKT 92 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCC
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHH--cC-CCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccccCCCc
Confidence 456789999999999999999999999 66 6665 678999999999999999999999999 79999999999999
Q ss_pred HHHHHHHhCCHHHHHHH
Q 044420 84 AFCFAVAAGSIHIAKIM 100 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~L 100 (545)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999986
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=60.22 E-value=17 Score=34.89 Aligned_cols=55 Identities=9% Similarity=-0.160 Sum_probs=27.1
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cccCCCCcHHHHHHHhCCHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLT-LQDRNGNTAFCFAVAAGSIH 95 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpLh~A~~~g~~~ 95 (545)
..|..|+..+.-....++.+....+++...|.-+. ..|..|.-.+.-+......+
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSD 123 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH
Confidence 45666666666666666666555555533322221 23444444444444444433
No 116
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=55.45 E-value=94 Score=29.81 Aligned_cols=188 Identities=5% Similarity=-0.083 Sum_probs=91.6
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cccCCCCcHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLT-LQDRNGNTAFC 86 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpLh 86 (545)
+|.-.+..+...++.+..+.+.+.-.| ....-..|..|+..+......+..+..+.+++.+.|.-.. ..+..|.-.+.
T Consensus 41 ~gsR~lQ~~l~~~~~~~~~~I~~el~~-~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQ 119 (369)
T 3k49_A 41 HGSRFIQRELATSPASEKEVIFNEIRD-DAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQ 119 (369)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHGG-GHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHH
T ss_pred cchHHHHHHhccCCHHHHHHHHHHHHH-HHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHH
Confidence 344455666666666665555552223 3444467899999999999999888888887754443222 23445555555
Q ss_pred HHHHhCCHHHHHHHHHc-Ccc-cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC-C-ccCCCCChhhHHHHHHhcCcH
Q 044420 87 FAVAAGSIHIAKIMLKK-NER-LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA-K-DNLTPEDQNALFFTCISTDLH 162 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~-~-~~~~~~~~t~l~~aa~~~~~~ 162 (545)
-+......+-...+++. .++ ..-.+|..|...+......+..+..+.+++.-.. . ......-++.....+......
T Consensus 120 k~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~ 199 (369)
T 3k49_A 120 KALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSS 199 (369)
T ss_dssp HHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCH
Confidence 55554444333333331 111 1113455565555555554443322222221100 0 001122223333333333332
Q ss_pred HHHHHHHHhCCCc--ccccCCCCchHHHHHHhCCCC
Q 044420 163 DLALKLLEDHSGL--AVARDGNYETALHVLARKPSA 196 (545)
Q Consensus 163 ~~~~~lL~~~~~~--~~~~d~~g~tpLh~A~~~~~~ 196 (545)
+.-..++.+-... .-..|..|.-.+..+...+..
T Consensus 200 ~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~ 235 (369)
T 3k49_A 200 EDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQF 235 (369)
T ss_dssp HHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCc
Confidence 3333333322111 124577788788887777654
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=40.92 E-value=1.2e+02 Score=28.88 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=56.6
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cccCCCCcHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLT-LQDRNGNTAF 85 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpL 85 (545)
..|...+......|+.+....+++.-.| ....-..+..|.-.+..+......+-...++++..+.-.. .+|.+|+..+
T Consensus 71 ~~gn~vvQklle~~~~~~~~~i~~~i~g-~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~Vi 149 (351)
T 3gvo_A 71 VFGNYVIQKFFEFGSLDQKLALATRIRG-HVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVV 149 (351)
T ss_dssp TTHHHHHHHHHHHCCHHHHHHHHHHHTT-CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHH
T ss_pred hhhhHHHHHHHhhCCHHHHHHHHHHHHh-hHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHH
Confidence 3455566666667777766666652233 4444467888888888888888877767777654332222 3566676666
Q ss_pred HHHHHhCCHHHHHHHH
Q 044420 86 CFAVAAGSIHIAKIML 101 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll 101 (545)
......+..+..+.++
T Consensus 150 Qk~l~~~~~~~~~~i~ 165 (351)
T 3gvo_A 150 QKCIECVQPQSLQFII 165 (351)
T ss_dssp HHHHHHSCGGGTHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 6655555444333333
No 118
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=30.75 E-value=31 Score=20.74 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=12.0
Q ss_pred hHHHHHcCChHHHHHhh
Q 044420 13 LQKAALKGNWPTAKHLL 29 (545)
Q Consensus 13 L~~Aa~~g~~~~v~~Ll 29 (545)
+..||..||.+.++.|=
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 56677777777777663
No 119
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.57 E-value=57 Score=30.98 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 044420 474 SALFISIINMMVAFSTTFFLA 494 (545)
Q Consensus 474 ~~l~~~~~~m~~af~~~~~~v 494 (545)
.+..++++++..+|++|+|-+
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 456678889999999999965
No 120
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.10 E-value=53 Score=31.62 Aligned_cols=21 Identities=19% Similarity=0.206 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 044420 474 SALFISIINMMVAFSTTFFLA 494 (545)
Q Consensus 474 ~~l~~~~~~m~~af~~~~~~v 494 (545)
.+..+++++|..+|++|+|-+
T Consensus 305 ~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 456678899999999999954
No 121
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=21.48 E-value=89 Score=30.25 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=12.6
Q ss_pred HHHHcCChHHHHHhhc
Q 044420 15 KAALKGNWPTAKHLLG 30 (545)
Q Consensus 15 ~Aa~~g~~~~v~~Ll~ 30 (545)
..+..|+...|+..+.
T Consensus 28 ~gv~e~~~~~ve~y~~ 43 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKS 43 (454)
T ss_dssp HHHHHTCHHHHHHHHT
T ss_pred HHHHcCChhHHHHHHh
Confidence 3456899999998888
Done!