BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044422
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/508 (53%), Positives = 354/508 (69%), Gaps = 27/508 (5%)
Query: 8 TCRKKKPCSALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEV 67
+C + C A ++ S RS + + S + ++LRVLDIIS ++ + +
Sbjct: 2 SCLRNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSGGVSNRQD 61
Query: 68 HLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLH 127
H +Q+F QTDS Q + DF + + G S+V ++++ L +
Sbjct: 62 HFGFVQEFRQTDSWRFRGQAISEDFDLSRTKNGVSSVLEEVM---------LEDSSSSVK 112
Query: 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187
R+ DA LS+AV SCG R+ R G+ + CLA++ GFI++VY+GSSL+ LY +
Sbjct: 113 RDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVE 172
Query: 188 DAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
+AYKVFEEMP RNVVSWTA+I+ FAQEW+VD+CL+LY MR S +PND+TFT++LSACT
Sbjct: 173 NAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACT 232
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
GSGALGQGRS HCQT+ MG SY+ ++NSLISMYCKCG++++A +F+ KD+VSWNS
Sbjct: 233 GSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNS 292
Query: 308 MIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366
MIAGYAQHGLA++AI+LFE MM K KPDAIT+LGV+SSCRH GLV+EG+ +F+ MA+H
Sbjct: 293 MIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEH 352
Query: 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EA 409
GLKPEL+HYSC+VDLLGR GLL+EA + I+ MP+ PN+VIW A
Sbjct: 353 GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRA 412
Query: 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYR 469
AE RL+LEP+CAATHVQLANLYA V W +AA VRKLMKDKGLKTNPGCSWIEI N V+
Sbjct: 413 AEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINNYVFM 472
Query: 470 FRAEDKSNTRLSEILPVLDFLVDQMKTL 497
F+AED SN R+ EI+ VL L+D M+ L
Sbjct: 473 FKAEDGSNCRMLEIVHVLHCLIDHMEFL 500
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/482 (35%), Positives = 265/482 (54%), Gaps = 35/482 (7%)
Query: 58 RTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117
+ RDS + H +++ L +D +S + +G +S +FD D VV
Sbjct: 116 KLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDF--ASRLFDGAEDKDVVTWT 173
Query: 118 KLI-----------SMHHDLHRERLKVDASFLS--TAVTSCGSTRNIRGGAPYQCLAIRT 164
+I +M + + ++ V A+ ++ + + + G ++R G L + T
Sbjct: 174 AMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET 233
Query: 165 GFI-ANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL 223
G + +V++GSSL+ +Y KC DA KVF+EMP RNVV+WTA+IA + Q D + +
Sbjct: 234 GRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLV 293
Query: 224 YRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283
+ M S + PN+ T +S+LSAC GAL +GR HC I+ +LI +Y K
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVK 353
Query: 284 CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343
CG +EEA+ VF +H K++ +W +MI G+A HG A A DLF M+ V P+ +TF+ V
Sbjct: 354 CGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 413
Query: 344 ISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402
+S+C HGGLVEEG+ F SM + ++P+ DHY+C+VDL GR GLLEEA+ I++MP+ P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473
Query: 403 NAVIWEA----------------AESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRK 445
V+W A A SR++ L+P + + LANLY+ + WD+ ARVRK
Sbjct: 474 TNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRK 533
Query: 446 LMKDKGLKTNPGCSWIEIMNVVYRFRA-EDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504
MKD+ + +PG SWIE+ + F A +DK ++ LD + QM+ + +V
Sbjct: 534 QMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRLPDELEDVT 593
Query: 505 EE 506
E
Sbjct: 594 AE 595
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/445 (35%), Positives = 247/445 (55%), Gaps = 31/445 (6%)
Query: 104 VFDQLLDTPVVDVEKLISMHH-------------DLHRERLKVDASFLSTAVTSCGSTRN 150
VFD +L+ +V +I ++ ++ E K +S+ +++CG +
Sbjct: 118 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177
Query: 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAA 210
CL+++T N+YVG++L+ LY+KC +I DA +VFE M ++ V+W++++A
Sbjct: 178 ALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAG 237
Query: 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270
+ Q + L LYR + LE N FT +S++ AC+ AL +G+ H + GF S
Sbjct: 238 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSN 297
Query: 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330
+ VA+S + MY KCG++ E+ +F+ + K++ WN++I+G+A+H + LFE+M +
Sbjct: 298 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ 357
Query: 331 QRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLE 389
+ P+ +TF ++S C H GLVEEG+ +F M +GL P + HYSC+VD+LGRAGLL
Sbjct: 358 DGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS 417
Query: 390 EARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLANLYA 432
EA + IK +P P A IW AAE LEPE A HV L+N+YA
Sbjct: 418 EAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYA 477
Query: 433 GVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVD 492
+ W++ A+ RKL++D +K G SWI+I + V+ F + + R+ EI LD LV
Sbjct: 478 ANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVI 537
Query: 493 QMKTLGYVPEVHEEKVDDASHKRTE 517
+ + GY P V E D K+ E
Sbjct: 538 KFRKFGYKPSVEHELHDVEIGKKEE 562
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 5/245 (2%)
Query: 152 RGGAPYQCLA-----IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTA 206
R GA + A IR +V + + LI YSKC + A +VF+ M R++VSW
Sbjct: 73 RNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNT 132
Query: 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266
+I + + L+++ MRN + ++FT +S+LSAC + + + HC +++
Sbjct: 133 MIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTC 192
Query: 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFE 326
+ V +L+ +Y KCG +++AV VF +M K V+W+SM+AGY Q+ A+ L+
Sbjct: 193 IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 252
Query: 327 EMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG 386
+ ++ + T VI +C + + EGK + K G + S VD+ + G
Sbjct: 253 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCG 312
Query: 387 LLEEA 391
L E+
Sbjct: 313 SLRES 317
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Query: 242 ILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD 301
IL C +GA+ + ++ H + IR+ + + N LI+ Y KCG VE A VF+ M +
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361
+VSWN+MI Y ++ + A+D+F EM + K T V+S+C E K
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 362 SMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
K + L + ++DL + G++++A + M ++V W +
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSS 233
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 222/383 (57%), Gaps = 17/383 (4%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
LS+ + + + R G ++ GF +NV+VGS+L+ LY++ ++ DA VF+ +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
RN VSW A+IA A+ + LEL++ M P+ F++ S+ AC+ +G L QG+
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317
H I+ G N+L+ MY K G++ +A +F+ + +D+VSWNS++ YAQHG
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377
A+ FEEM + ++P+ I+FL V+++C H GL++EG Y++ M K G+ PE HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403
Query: 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPEC 420
VVDLLGRAG L A FI++MPI P A IW+ AAE L+P+
Sbjct: 404 VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 463
Query: 421 AATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRL 480
HV L N+YA W+ AARVRK MK+ G+K P CSW+EI N ++ F A D+ + +
Sbjct: 464 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQR 523
Query: 481 SEILPVLDFLVDQMKTLGYVPEV 503
EI + ++ ++K LGYVP+
Sbjct: 524 EEIARKWEEVLAKIKELGYVPDT 546
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 156/298 (52%), Gaps = 1/298 (0%)
Query: 101 SSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCL 160
S + D+ L P D+ L + +DL + D F +T + C + + G
Sbjct: 27 SEDSEDESLKFPSNDL-LLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAH 85
Query: 161 AIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC 220
+++ F ++ +G++L+ +Y+KC + +A KVFE+MP R+ V+WT +I+ ++Q +
Sbjct: 86 ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145
Query: 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280
L + M PN+FT +S++ A G H ++ GF S + V ++L+ +
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 205
Query: 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340
Y + G +++A VF+ + ++ VSWN++IAG+A+ +A++LF+ M++ +P ++
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265
Query: 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+ +C G +E+GK M K G K + ++D+ ++G + +AR ++
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 237/404 (58%), Gaps = 18/404 (4%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
++ I ++ + LK+D + + +CG I G IRT F ++YVGS+L
Sbjct: 252 KEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSAL 311
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
I +Y KC+ + A VF+ M +NVVSWTA++ + Q + + ++++ M+ S ++P+
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH 371
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
+T +SAC +L +G H + I G Y+ V+NSL+++Y KCG+++++ +FN
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
M+ +D VSW +M++ YAQ G AV I LF++M++ +KPD +T GVIS+C GLVE+G
Sbjct: 432 MNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491
Query: 357 KVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE------- 408
+ YF M +++G+ P + HYSC++DL R+G LEEA FI MP P+A+ W
Sbjct: 492 QRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACR 551
Query: 409 ----------AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGC 458
AAES + L+P A + L+++YA WD A++R+ M++K +K PG
Sbjct: 552 NKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQ 611
Query: 459 SWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
SWI+ ++ F A+D+S+ L +I L+ L +++ GY P+
Sbjct: 612 SWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPD 655
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 141/305 (46%), Gaps = 31/305 (10%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
L T + S ++ G I+ GF + + VGS L+ +Y+ I DA KVF +
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201
Query: 198 VRNVV------------------------------SWTAIIAAFAQEWQVDMCLELYRMM 227
RN V SW A+I AQ +E +R M
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM 261
Query: 228 RNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287
+ L+ + + F S+L AC G GA+ +G+ H IR F +I V ++LI MYCKC +
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 288 EEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347
A VF+ M K++VSW +M+ GY Q G A A+ +F +M + + PD T IS+C
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Query: 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
+ +EEG + GL + + +V L G+ G ++++ +M + +AV W
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDAVSW 440
Query: 408 EAAES 412
A S
Sbjct: 441 TAMVS 445
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 34/273 (12%)
Query: 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYR-MM 227
N++ ++L+ YSK +I + FE++P R+ V+W +I ++ V ++ Y MM
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 228 RNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK---- 283
R+ T ++L + +G + G+ H Q I++GF SY+ V + L+ MY
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 284 ---------------------------CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG 316
CG +E+A+ +F M KD VSW +MI G AQ+G
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNG 249
Query: 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376
LA AI+ F EM Q +K D F V+ +C G + EGK + + + + S
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309
Query: 377 CVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
++D+ + L A+ +M N V W A
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTA 341
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 243 LSACTGSGALGQGRSA---HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299
+ C G GA Q R H IR + + N+++ Y + A VF+ +
Sbjct: 10 IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69
Query: 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359
++ SWN+++ Y++ GL FE++ + D +T+ +I GLV
Sbjct: 70 PNLFSWNNLLLAYSKAGLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKA 125
Query: 360 FDSMAK 365
+++M +
Sbjct: 126 YNTMMR 131
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 285 bits (729), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 226/384 (58%), Gaps = 18/384 (4%)
Query: 129 ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
+ LK D+ +++ +C +R G I+TG + NV+VGSSLI LYSKC +
Sbjct: 470 DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A KVF M N+V+W ++I+ +++ ++ ++L+ +M + + P+ + TS+L A +
Sbjct: 530 ALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISS 589
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
+ +L +G+S H T+R+G S + N+LI MY KCG + A +F M K +++WN M
Sbjct: 590 TASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLM 649
Query: 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HG 367
I GY HG + A+ LF+EM K PD +TFL +IS+C H G VEEGK F+ M + +G
Sbjct: 650 IYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYG 709
Query: 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EAA 410
++P ++HY+ +VDLLGRAGLLEEA FIK MPI ++ IW +A
Sbjct: 710 IEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSA 769
Query: 411 ESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRF 470
E L +EPE +T+VQL NLY ++AA++ LMK+KGL PGCSWIE+ + F
Sbjct: 770 EKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVF 829
Query: 471 RAEDKSNTRLSEILPVLDFLVDQM 494
+ S+ +EI VL+ L M
Sbjct: 830 FSGGSSSPMKAEIFNVLNRLKSNM 853
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 134/271 (49%), Gaps = 3/271 (1%)
Query: 131 LKVDASFLSTAVTSCGSTRNIR--GGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
++ DA LS V+ N R G +R + ++ ++LI +Y K + ID
Sbjct: 164 VRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSID 223
Query: 189 AYKVFEEMPVR-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
A++VF E+ + NVV W +I F + L+LY + +N+ ++ +FT L AC+
Sbjct: 224 AWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACS 283
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
S G GR HC ++MG + V SL+SMY KCG V EA VF+ + K + WN+
Sbjct: 284 QSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNA 343
Query: 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367
M+A YA++ A+DLF M ++ V PD+ T VIS C GL GK + K
Sbjct: 344 MVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRP 403
Query: 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
++ S ++ L + G +A K M
Sbjct: 404 IQSTSTIESALLTLYSKCGCDPDAYLVFKSM 434
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 143/281 (50%), Gaps = 3/281 (1%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
+K+ ++ + A+ +C + N G C ++ G + YV +SL+++YSKC ++ +A
Sbjct: 268 VKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
VF + + + W A++AA+A+ L+L+ MR + P+ FT ++++S C+ G
Sbjct: 328 TVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLG 387
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
G+S H + + S + ++L+++Y KCG +A VF +M KD+V+W S+I+
Sbjct: 388 LYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLIS 447
Query: 311 GYAQHGLAVRAIDLFEEMM--KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368
G ++G A+ +F +M +KPD+ V ++C + G SM K GL
Sbjct: 448 GLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGL 507
Query: 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+ S ++DL + GL E A M N V W +
Sbjct: 508 VLNVFVGSSLIDLYSKCGLPEMALKVFTSMST-ENMVAWNS 547
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN- 295
FTF S+L AC+ L G++ H + +G+ +A SL++MY KCG ++ AV VF+
Sbjct: 61 FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120
Query: 296 ------NMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS-SCR 348
+ +D+ WNSMI GY + + F M+ V+PDA + V+S C+
Sbjct: 121 WSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCK 180
Query: 349 HGGL-VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
G EEGK M ++ L + + ++D+ + GL +A ++ N V+W
Sbjct: 181 EGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLW 240
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 128/288 (44%), Gaps = 20/288 (6%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE------- 194
+ +C + N+ G + G+ + ++ +SL+ +Y KC + A +VF+
Sbjct: 67 LKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQS 126
Query: 195 EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL-- 252
+ R+V W ++I + + + + +R M + P+ F+ + ++S G
Sbjct: 127 GVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRR 186
Query: 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-DIVSWNSMIAG 311
+G+ H +R + + +LI MY K G +A VF + K ++V WN MI G
Sbjct: 187 EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVG 246
Query: 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371
+ G+ ++DL+ VK + +F G + +C G+ + K GL
Sbjct: 247 FGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHN- 305
Query: 372 LDHYSC--VVDLLGRAGLLEEARDFI-----KQMPIYPNAVIWEAAES 412
D Y C ++ + + G++ EA K++ I+ NA++ AE+
Sbjct: 306 -DPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIW-NAMVAAYAEN 351
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 238/406 (58%), Gaps = 19/406 (4%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
++ D L+ AV++C + ++ G A +GF +++ ++L+TLYS+C I ++Y
Sbjct: 587 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY 646
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
FE+ + ++W A+++ F Q + L ++ M ++ N+FTF S + A + +
Sbjct: 647 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETA 706
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
+ QG+ H + G+ S +V N+LISMY KCG++ +A F + K+ VSWN++I
Sbjct: 707 NMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIIN 766
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLK 369
Y++HG A+D F++M+ V+P+ +T +GV+S+C H GLV++G YF+SM +++GL
Sbjct: 767 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLS 826
Query: 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAES 412
P+ +HY CVVD+L RAGLL A++FI++MPI P+A++W AA
Sbjct: 827 PKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHH 886
Query: 413 RLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRA 472
L LEPE +AT+V L+NLYA + WD R+ MK+KG+K PG SWIE+ N ++ F
Sbjct: 887 LLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYV 946
Query: 473 EDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEP 518
D+++ EI L + +GYV + +++ H++ +P
Sbjct: 947 GDQNHPLADEIHEYFQDLTKRASEIGYVQDCF-SLLNELQHEQKDP 991
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 139/293 (47%), Gaps = 1/293 (0%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
EK + + +H + L+ D++ L++ V +C + + G + GF +N + +L
Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 430
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
+ LY+KC I A F E V NVV W ++ A+ + ++R M+ + PN
Sbjct: 431 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
+T+ SIL C G L G H Q I+ F V + LI MY K G ++ A +
Sbjct: 491 YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 550
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
GKD+VSW +MIAGY Q+ +A+ F +M+ + ++ D + +S+C ++EG
Sbjct: 551 FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 610
Query: 357 KVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+ G +L + +V L R G +EE+ +Q N + W A
Sbjct: 611 QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNA 662
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 1/268 (0%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV 201
+ +C ++ G I+T F N YV S LI +Y+K + A+ + ++V
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261
VSWT +IA + Q D L +R M + + ++ T+ +SAC G AL +G+ H Q
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616
Query: 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321
GF S + N+L+++Y +CG +EE+ F D ++WN++++G+ Q G A
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
Query: 322 IDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381
+ +F M ++ + + TF + + +++GK + K G E + + ++ +
Sbjct: 677 LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 736
Query: 382 LGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+ G + +A ++ N V W A
Sbjct: 737 YAKCGSISDAEKQFLEVST-KNEVSWNA 763
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 133/260 (51%), Gaps = 4/260 (1%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
S+ +++C ++ G L ++ GF ++ YV ++L++LY +I A +F M
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
R+ V++ +I +Q + +EL++ M LEP+ T S++ AC+ G L +G+
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317
H T ++GF S ++ +L+++Y KC ++E A+ F +++V WN M+ Y
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470
Query: 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377
+ +F +M + + P+ T+ ++ +C G +E G+ + K +L+ Y C
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF--QLNAYVC 528
Query: 378 --VVDLLGRAGLLEEARDFI 395
++D+ + G L+ A D +
Sbjct: 529 SVLIDMYAKLGKLDTAWDIL 548
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 158/346 (45%), Gaps = 15/346 (4%)
Query: 76 LQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLIS--MHHDLHRERLKV 133
L DS S+K + +G+ VFD++ + + K+I +L E +
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGL 173
Query: 134 DASFLSTAVTS-----CGSTRNIRGGA-------PYQCLAIRTGFIANVYVGSSLITLYS 181
+S VT G RGG+ + G + V + LI LYS
Sbjct: 174 FVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYS 233
Query: 182 KCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS 241
+ + A +VF+ + +++ SW A+I+ ++ + L+ M + P + F+S
Sbjct: 234 RNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 293
Query: 242 ILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD 301
+LSAC +L G H +++GF S V N+L+S+Y GN+ A ++F+NM +D
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353
Query: 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361
V++N++I G +Q G +A++LF+ M ++PD+ T ++ +C G + G+
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 362 SMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
K G +++L + +E A D+ + + N V+W
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEV-ENVVLW 458
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 16/209 (7%)
Query: 227 MRNSMLEPNDFTFTSILSACTGS-GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285
+ N + PN T +L C + G+L +GR H Q +++G S ++ L Y G
Sbjct: 75 VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134
Query: 286 NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345
++ A VF+ M + I +WN MI A L LF M+ + V P+ TF GV+
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194
Query: 346 SCRHGGLVEEGKVYFDSMAK-------HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+CR G V FD + + GL+ + ++DL R G ++ AR +
Sbjct: 195 ACRG------GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 248
Query: 399 PIYPNAVIWEAAESRLLLEPECAATHVQL 427
+ ++ W A S L + EC A ++L
Sbjct: 249 RLKDHSS-WVAMISG-LSKNECEAEAIRL 275
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/435 (33%), Positives = 243/435 (55%), Gaps = 36/435 (8%)
Query: 101 SSNVFDQLLDTPVVDVEKLISMHHD-------------LHRERLKVDASFLSTAVTSCGS 147
+ +FDQ+ V+ +IS + + R+ ++ + S+ + SC
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174
Query: 148 TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAI 207
++R C I+ G ++V+V S+LI +++K DA VF+EM + + W +I
Sbjct: 175 MSDVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231
Query: 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF 267
I FAQ + D+ LEL++ M+ + T TS+L ACTG L G AH ++ +
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--Y 289
Query: 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEE 327
+ + N+L+ MYCKCG++E+A+ VFN M +D+++W++MI+G AQ+G + A+ LFE
Sbjct: 290 DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER 349
Query: 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAG 386
M KP+ IT +GV+ +C H GL+E+G YF SM K +G+ P +HY C++DLLG+AG
Sbjct: 350 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAG 409
Query: 387 LLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLAN 429
L++A + +M P+AV W AA+ + L+PE A T+ L+N
Sbjct: 410 KLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 469
Query: 430 LYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDF 489
+YA + WD +R M+D+G+K PGCSWIE+ ++ F D S+ ++ E+ L+
Sbjct: 470 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQ 529
Query: 490 LVDQMKTLGYVPEVH 504
L+ ++ +GYVPE +
Sbjct: 530 LIHRLTGIGYVPETN 544
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 145/284 (51%), Gaps = 5/284 (1%)
Query: 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS 174
D+ + + L L D++ S + C S R + G G +++ +
Sbjct: 41 DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100
Query: 175 SLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234
LI +Y K ++ DA+++F++MP RNV+SWT +I+A+++ LEL +M + P
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294
N +T++S+L +C G + R HC I+ G S + V ++LI ++ K G E+A+ VF
Sbjct: 161 NVYTYSSVLRSCNG---MSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217
Query: 295 NNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354
+ M D + WNS+I G+AQ+ + A++LF+ M + + T V+ +C L+E
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277
Query: 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
G + K+ +L + +VD+ + G LE+A QM
Sbjct: 278 LGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRVFNQM 319
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 278 bits (710), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 229/374 (61%), Gaps = 22/374 (5%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
++T + + VG++L+ Y K + +A KVF + +++V+W+A++A +AQ + + +
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGA-LGQGRSAHCQTIRMGFFSYIQVANSLISM 280
+++ + ++PN+FTF+SIL+ C + A +GQG+ H I+ S + V+++L++M
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 539
Query: 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340
Y K GN+E A VF KD+VSWNSMI+GYAQHG A++A+D+F+EM K++VK D +TF
Sbjct: 540 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 599
Query: 341 LGVISSCRHGGLVEEGKVYFDSMAKH-GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
+GV ++C H GLVEEG+ YFD M + + P +H SC+VDL RAG LE+A I+ MP
Sbjct: 600 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659
Query: 400 IYPNAVIWE-----------------AAESRLLLEPECAATHVQLANLYAGVRCWDQAAR 442
+ IW AAE + ++PE +A +V L+N+YA W + A+
Sbjct: 660 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAK 719
Query: 443 VRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
VRKLM ++ +K PG SWIE+ N Y F A D+S+ +I L+ L ++K LGY P+
Sbjct: 720 VRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779
Query: 503 VHE--EKVDDASHK 514
+ +DD HK
Sbjct: 780 TSYVLQDIDD-EHK 792
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 163/333 (48%), Gaps = 19/333 (5%)
Query: 99 FGSSNVFDQLLDTPVVDVEKLISMHH----------------DLHRERLKVDASFLSTAV 142
+ + N+FD+ +P D E IS+ ++HR +++D S S+ +
Sbjct: 44 YNAHNLFDK---SPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVL 100
Query: 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVV 202
+ + G C I+ GF+ +V VG+SL+ Y K D KVF+EM RNVV
Sbjct: 101 KVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVV 160
Query: 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262
+WT +I+ +A+ D L L+ M+N +PN FTF + L G G+G H
Sbjct: 161 TWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVV 220
Query: 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAI 322
++ G I V+NSLI++Y KCGNV +A +F+ K +V+WNSMI+GYA +GL + A+
Sbjct: 221 VKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEAL 280
Query: 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382
+F M V+ +F VI C + + + S+ K+G + + + ++
Sbjct: 281 GMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAY 340
Query: 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL 415
+ + +A K++ N V W A S L
Sbjct: 341 SKCTAMLDALRLFKEIGCVGNVVSWTAMISGFL 373
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 7/286 (2%)
Query: 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVG 173
+D+E L M + + +++ S ++ + C + + +R C ++ GF+ + +
Sbjct: 275 LDLEAL-GMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 174 SSLITLYSKCRVIIDAYKVFEEMP-VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSML 232
++L+ YSKC ++DA ++F+E+ V NVVSWTA+I+ F Q + ++L+ M+ +
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393
Query: 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292
PN+FT++ IL+A + H Q ++ + V +L+ Y K G VEEA
Sbjct: 394 RPNEFTYSVILTAL----PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 449
Query: 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH-GG 351
VF+ + KDIV+W++M+AGYAQ G AI +F E+ K +KP+ TF +++ C
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509
Query: 352 LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397
+ +GK + K L L S ++ + + G +E A + K+
Sbjct: 510 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 555
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Query: 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRG-GAPYQCLAIRTGFIANVYVG 173
+ E I M +L + +K + S+ + C +T G G + AI++ +++ V
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 174 SSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233
S+L+T+Y+K I A +VF+ +++VSW ++I+ +AQ Q L++++ M+ ++
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593
Query: 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS-LISMYCKCGNVEEAVY 292
+ TF + +ACT +G + +G +R + + NS ++ +Y + G +E+A+
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653
Query: 293 VFNNM---HGKDIVSWNSMIAGYAQH 315
V NM G I W +++A H
Sbjct: 654 VIENMPNPAGSTI--WRTILAACRVH 677
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 241/461 (52%), Gaps = 69/461 (14%)
Query: 104 VFDQLLDTPVVDVEKLISMHHD-------------LHRERLKVDASFLSTAVTSCGSTRN 150
VFD++ D VV LI+ + R++ D L++ +++C S
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA 268
Query: 151 IRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV-------- 201
I+ G ++ + N + + ++ + +Y+KC I +A +F+ MP+RNV
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 202 -----------------------VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238
VSW A+IA + Q + + L L+ +++ + P ++
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 239 FTSILSACTGSGALGQGRSAHCQTIRMGF-FSY-----IQVANSLISMYCKCGNVEEAVY 292
F +IL AC L G AH ++ GF F I V NSLI MY KCG VEE
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352
VF M +D VSWN+MI G+AQ+G A++LF EM++ KPD IT +GV+S+C H G
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508
Query: 353 VEEGKVYFDSMAKH-GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA-- 409
VEEG+ YF SM + G+ P DHY+C+VDLLGRAG LEEA+ I++MP+ P++VIW +
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLL 568
Query: 410 ---------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454
AE L +EP + +V L+N+YA + W+ VRK M+ +G+
Sbjct: 569 AACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTK 628
Query: 455 NPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK 495
PGCSWI+I + F +DKS+ R +I +LD L+ +M+
Sbjct: 629 QPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 142/271 (52%), Gaps = 32/271 (11%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAII------------- 208
I++GF +++ + LI YSKC + D +VF++MP RN+ +W +++
Sbjct: 47 IKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEAD 106
Query: 209 ------------------AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
+ FAQ + + L + MM N+++F S+LSAC+G
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
+ +G H + F S + + ++L+ MY KCGNV +A VF+ M +++VSWNS+I
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLIT 226
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-LK 369
+ Q+G AV A+D+F+ M++ RV+PD +T VIS+C ++ G+ + K+ L+
Sbjct: 227 CFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLR 286
Query: 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400
++ + VD+ + ++EAR MPI
Sbjct: 287 NDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/425 (34%), Positives = 232/425 (54%), Gaps = 32/425 (7%)
Query: 126 LHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV 185
L R D + +C G C ++ GF +VYV + LI LY C
Sbjct: 142 LERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGC 201
Query: 186 IIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245
+ A KVF+EMP R++VSW ++I A + + D L+L+R M+ S EP+ +T S+LSA
Sbjct: 202 LDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSA 260
Query: 246 CTGSGALGQGRSAHCQTIR---MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI 302
C G G+L G AH +R + + V NSLI MYCKCG++ A VF M +D+
Sbjct: 261 CAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDL 320
Query: 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--VKPDAITFLGVISSCRHGGLVEEGKVYF 360
SWN+MI G+A HG A A++ F+ M+ +R V+P+++TF+G++ +C H G V +G+ YF
Sbjct: 321 ASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYF 380
Query: 361 DSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA---------- 409
D M + + ++P L+HY C+VDL+ RAG + EA D + MP+ P+AVIW +
Sbjct: 381 DMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGA 440
Query: 410 ---------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454
E C+ +V L+ +YA W+ VRKLM + G++
Sbjct: 441 SVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK 500
Query: 455 NPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHK 514
PGCS IEI + + F A D S+ + +I L + D+++++GY+P+ + + DA++
Sbjct: 501 EPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATND 560
Query: 515 RTEPF 519
++ +
Sbjct: 561 GSKEY 565
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 168 ANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEW-QVDMCLELYR- 225
A +++ ++ L S + A++VF+ + + W +I A A + + + LYR
Sbjct: 81 ATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRK 140
Query: 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285
M+ P+ TF +L AC +G+ HCQ ++ GF + V N LI +Y CG
Sbjct: 141 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCG 200
Query: 286 NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345
++ A VF+ M + +VSWNSMI + G A+ LF EM + +PD T V+S
Sbjct: 201 CLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLS 259
Query: 346 SCRHGGLVEEG 356
+C G + G
Sbjct: 260 ACAGLGSLSLG 270
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 234/410 (57%), Gaps = 24/410 (5%)
Query: 117 EKLISMHHDLHRERLKVD----ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV 172
E+++ ++ ++R ++ D L V S + ++ G R G+ ++VY+
Sbjct: 160 EEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYI 219
Query: 173 GSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYR-MMRNSM 231
++L+ +Y++ + A VF MPVRNVVSW+A+IA +A+ + L +R MMR +
Sbjct: 220 MTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETK 279
Query: 232 -LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290
PN T S+L AC AL QG+ H +R G S + V ++L++MY +CG +E
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVG 339
Query: 291 VYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350
VF+ MH +D+VSWNS+I+ Y HG +AI +FEEM+ P +TF+ V+ +C H
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHE 399
Query: 351 GLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-- 407
GLVEEGK F++M + HG+KP+++HY+C+VDLLGRA L+EA ++ M P +W
Sbjct: 400 GLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS 459
Query: 408 --------------EAAESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452
E A RL LEP+ A +V LA++YA + WD+ RV+KL++ +GL
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519
Query: 453 KTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
+ PG W+E+ +Y F + D+ N + +I L L + MK GY+P+
Sbjct: 520 QKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQ 569
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 6/234 (2%)
Query: 171 YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230
++ + LI +YS + A KVF++ R + W A+ A + L LY M
Sbjct: 113 FLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRI 172
Query: 231 MLEPNDFTFTSILSACTGS----GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286
+E + FT+T +L AC S L +G+ H R G+ S++ + +L+ MY + G
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232
Query: 287 VEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--VKPDAITFLGVI 344
V+ A YVF M +++VSW++MIA YA++G A A+ F EMM++ P+++T + V+
Sbjct: 233 VDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292
Query: 345 SSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+C +E+GK+ + + GL L S +V + GR G LE + +M
Sbjct: 293 QACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM 346
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 5/180 (2%)
Query: 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293
P+ T+ ++ C +L H + G +A LI MY G+V+ A V
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 294 FNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG--- 350
F+ + I WN++ G + L+ +M + V+ D T+ V+ +C
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 351 -GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+ +GK + + G + + +VD+ R G ++ A MP+ N V W A
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWSA 253
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 275 bits (702), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 234/422 (55%), Gaps = 19/422 (4%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E + M ++ LK D+ LS+ + ++ G IR G ++VY+GSSL
Sbjct: 224 EDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSL 283
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
+ +Y+K I D+ +VF + R+ +SW +++A + Q + + L L+R M + ++P
Sbjct: 284 VDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGA 343
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
F+S++ AC L G+ H +R GF S I +A++L+ MY KCGN++ A +F+
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDR 403
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
M+ D VSW ++I G+A HG A+ LFEEM +Q VKP+ + F+ V+++C H GLV+E
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463
Query: 357 KVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-------- 407
YF+SM K +GL EL+HY+ V DLLGRAG LEEA +FI +M + P +W
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523
Query: 408 ---------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGC 458
+ AE ++ E +V + N+YA W + A++R M+ KGL+ P C
Sbjct: 524 VHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPAC 583
Query: 459 SWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVD-DASHKRTE 517
SWIE+ N + F + D+S+ + +I L +++QM+ GYV + D D HKR
Sbjct: 584 SWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKREL 643
Query: 518 PF 519
F
Sbjct: 644 LF 645
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 191/421 (45%), Gaps = 57/421 (13%)
Query: 39 ISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDS-KHLDSQKFNHDFTGTNS 97
+SSSK+L K L I TR +K++ +L F++T S H + +T
Sbjct: 1 MSSSKALIKTL-----IKNPTRIKSKSQAK-QLHAQFIRTQSLSHTSASIVISIYTNLKL 54
Query: 98 TFGSSNVFDQLLDTPVVDVEKLISMHHD--LHRERLKV-----------DASFLSTAVTS 144
+ +F L PV+ + +I D L + L D + + + S
Sbjct: 55 LHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKS 114
Query: 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI------------------ 186
C ++R G +R G ++Y G++L+ +Y+K +
Sbjct: 115 CTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTS 174
Query: 187 -----------------IDAYK-VFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228
ID+ + VFE MP ++VVS+ IIA +AQ + L + R M
Sbjct: 175 NSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMG 234
Query: 229 NSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVE 288
+ L+P+ FT +S+L + + +G+ H IR G S + + +SL+ MY K +E
Sbjct: 235 TTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 294
Query: 289 EAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348
++ VF+ ++ +D +SWNS++AGY Q+G A+ LF +M+ +VKP A+ F VI +C
Sbjct: 295 DSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACA 354
Query: 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE 408
H + GK + + G + S +VD+ + G ++ AR +M + + V W
Sbjct: 355 HLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL-DEVSWT 413
Query: 409 A 409
A
Sbjct: 414 A 414
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 228/399 (57%), Gaps = 20/399 (5%)
Query: 125 DLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR 184
++ R K + +T +TSC + G L ++ + ++++VGSSL+ +Y+K
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 202
Query: 185 VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS 244
I +A ++FE +P R+VVS TAIIA +AQ + LE++ + + + PN T+ S+L+
Sbjct: 203 QIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLT 262
Query: 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS 304
A +G L G+ AHC +R Y + NSLI MY KCGN+ A +F+NM + +S
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS 322
Query: 305 WNSMIAGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM 363
WN+M+ GY++HGL ++LF M ++RVKPDA+T L V+S C HG + + G FD M
Sbjct: 323 WNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGM 382
Query: 364 --AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAV---------------- 405
++G KP +HY C+VD+LGRAG ++EA +FIK+MP P A
Sbjct: 383 VAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVD 442
Query: 406 IWEAAESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIM 464
I E+ RL+ +EPE A +V L+NLYA W VR +M K + PG SWI+
Sbjct: 443 IGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHE 502
Query: 465 NVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
++ F A D+++ R E+L + + +MK GYVP++
Sbjct: 503 QTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDL 541
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 148/272 (54%), Gaps = 9/272 (3%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV 201
+ +C R +R G I+T ++ Y+ + L+ Y KC + DA KV +EMP +NV
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261
VSWTA+I+ ++Q L ++ M S +PN+FTF ++L++C + LG G+ H
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178
Query: 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321
++ + S+I V +SL+ MY K G ++EA +F + +D+VS ++IAGYAQ GL A
Sbjct: 179 IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 238
Query: 322 IDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC---- 377
+++F + + + P+ +T+ ++++ L++ GK H L+ EL Y+
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGK----QAHCHVLRRELPFYAVLQNS 294
Query: 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
++D+ + G L AR MP A+ W A
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMP-ERTAISWNA 325
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 226 MMRNSMLEP--NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283
++ +ML P + ++L+AC AL G+ H I+ + + L+ Y K
Sbjct: 40 LLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGK 99
Query: 284 CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343
C +E+A V + M K++VSW +MI+ Y+Q G + A+ +F EMM+ KP+ TF V
Sbjct: 100 CDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATV 159
Query: 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
++SC + GK + K + S ++D+ +AG ++EAR+ + +P
Sbjct: 160 LTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E+ + M H LH E + + ++ +T+ + G C +R + +SL
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPN 235
I +YSKC + A ++F+ MP R +SW A++ +++ LEL+R+MR+ ++P+
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 236 DFTFTSILSACT 247
T ++LS C+
Sbjct: 356 AVTLLAVLSGCS 367
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 207/353 (58%), Gaps = 18/353 (5%)
Query: 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228
NV +++IT Y++C I +A +F++MP R+ VSW A+IA ++Q L L+ M
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 229 NSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVE 288
N +F+S LS C AL G+ H + ++ G+ + V N+L+ MYCKCG++E
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 289 EAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348
EA +F M GKDIVSWN+MIAGY++HG A+ FE M ++ +KPD T + V+S+C
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 349 HGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
H GLV++G+ YF +M + +G+ P HY+C+VDLLGRAGLLE+A + +K MP P+A IW
Sbjct: 522 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 581
Query: 408 -----------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450
AA+ +EPE + +V L+NLYA W ++R M+DK
Sbjct: 582 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 641
Query: 451 GLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
G+K PG SWIEI N + F D+ + EI L+ L +MK GYV +
Sbjct: 642 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKT 694
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 123/236 (52%), Gaps = 16/236 (6%)
Query: 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRM 226
+ +V +++IT Y++ I +A ++F+E PV++V +WTA+++ + Q V+ EL+
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF-- 304
Query: 227 MRNSMLEPNDFTFTSILSACTGSGALGQGRSAH----CQTIRMGFFSYIQVANSLISMYC 282
+ M E N+ ++ ++L+ + + C+ + N++I+ Y
Sbjct: 305 --DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN--------VSTWNTMITGYA 354
Query: 283 KCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLG 342
+CG + EA +F+ M +D VSW +MIAGY+Q G + A+ LF +M ++ + + +F
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+S+C +E GK + K G + + ++ + + G +EEA D K+M
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 470
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 2/193 (1%)
Query: 126 LHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV 185
+ RE +++ S S+A+++C + G ++ G+ +VG++L+ +Y KC
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 459
Query: 186 IIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245
I +A +F+EM +++VSW +IA +++ ++ L + M+ L+P+D T ++LSA
Sbjct: 460 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSA 519
Query: 246 CTGSGALGQGRSA-HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM-HGKDIV 303
C+ +G + +GR + T G Q ++ + + G +E+A + NM D
Sbjct: 520 CSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAA 579
Query: 304 SWNSMIAGYAQHG 316
W +++ HG
Sbjct: 580 IWGTLLGASRVHG 592
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 176 LITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN 235
+I Y + R + A ++FE MP R+V SW +++ +AQ + C++ R + + M E N
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQ----NGCVDDARSVFDRMPEKN 187
Query: 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN 295
D ++ ++LSA + + + C + + N L+ + K + EA F+
Sbjct: 188 DVSWNALLSAYVQNSKMEEA----CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFD 243
Query: 296 NMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE 355
+M+ +D+VSWN++I GYAQ G A LF+E Q D T+ ++S +VEE
Sbjct: 244 SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ----DVFTWTAMVSGYIQNRMVEE 299
Query: 356 GKVYFDSMAKHGLKPELDHYSCVVDLLG--RAGLLEEARDFIKQMP 399
+ FD M PE + S L G + +E A++ MP
Sbjct: 300 ARELFDKM------PERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 118/241 (48%), Gaps = 27/241 (11%)
Query: 174 SSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233
+++++ Y++ + DA VF+ MP +N VSW A+++A+ Q +++ L++ N L
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL- 219
Query: 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVA-----NSLISMYCKCGNVE 288
++ +L + + R FF + V N++I+ Y + G ++
Sbjct: 220 ---VSWNCLLGGFVKKKKIVEARQ---------FFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 289 EAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348
EA +F+ +D+ +W +M++GY Q+ + A +LF++M ++ + +++ +++
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYV 323
Query: 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE 408
G +E K FD M + ++ ++ + G + EA++ +MP + V W
Sbjct: 324 QGERMEMAKELFDVMPCRNVST----WNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWA 378
Query: 409 A 409
A
Sbjct: 379 A 379
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 275 NSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK 334
N +IS Y + G E A +F+ M +D+VSWN MI GY ++ +A +LF E+M +R
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF-EIMPER-- 155
Query: 335 PDAITFLGVISSCRHGGLVEEGKVYFDSM 363
D ++ ++S G V++ + FD M
Sbjct: 156 -DVCSWNTMLSGYAQNGCVDDARSVFDRM 183
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328
S I+ N IS Y + G EA+ VF M VS+N MI+GY ++G A LF+EM
Sbjct: 62 SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121
Query: 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA--G 386
++ + + G + + R+ G E F+ M PE D S L G A G
Sbjct: 122 PERDLVSWNVMIKGYVRN-RNLGKARE---LFEIM------PERDVCSWNTMLSGYAQNG 171
Query: 387 LLEEARDFIKQMPIYPNAVIWEA 409
+++AR +MP N V W A
Sbjct: 172 CVDDARSVFDRMP-EKNDVSWNA 193
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 272 bits (695), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 241/423 (56%), Gaps = 26/423 (6%)
Query: 102 SNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGG-APYQCL 160
S+V + D+ ++++ +LI H + ++ L D +S + G + ++ G + +
Sbjct: 256 SSVLPSVGDSEMLNMGRLI--HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQF 313
Query: 161 AIRTGFIANVYV-GSSLITLYSKCRVIIDAYKVFEEMPVR-NVVSWTAIIAAFAQEWQVD 218
+ + N Y+ G S L K ++ +++F+E + NVVSWT+IIA AQ +
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKA---LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDI 370
Query: 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278
LEL+R M+ + ++PN T S+L AC ALG GRS H +R+ + V ++LI
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALI 430
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338
MY KCG + + VFN M K++V WNS++ G++ HG A + +FE +M+ R+KPD I
Sbjct: 431 DMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFI 490
Query: 339 TFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397
+F ++S+C GL +EG YF M+ ++G+KP L+HYSC+V+LLGRAG L+EA D IK+
Sbjct: 491 SFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKE 550
Query: 398 MPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLANLYAGVRCWDQA 440
MP P++ +W AAE LEPE T+V L+N+YA W +
Sbjct: 551 MPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEV 610
Query: 441 ARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYV 500
+R M+ GLK NPGCSWI++ N VY A DKS+ ++ +I +D + +M+ G+
Sbjct: 611 DSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHR 670
Query: 501 PEV 503
P +
Sbjct: 671 PNL 673
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 35/272 (12%)
Query: 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193
D+ L C + G C++ +G + +V S+ +Y +C + DA KVF
Sbjct: 115 DSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVF 174
Query: 194 EEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE-------------------- 233
+ M ++VV+ +A++ A+A++ ++ + + M +S +E
Sbjct: 175 DRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHK 234
Query: 234 ---------------PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278
P+ T +S+L + S L GR H I+ G V +++I
Sbjct: 235 EAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338
MY K G+V + +FN + N+ I G +++GL +A+++FE +Q ++ + +
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVV 354
Query: 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370
++ +I+ C G E F M G+KP
Sbjct: 355 SWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 105/231 (45%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
+++G + Y+ + LI YS DA V + +P + S++++I A + +
Sbjct: 42 LKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSI 101
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281
++ M + L P+ ++ C A G+ HC + G V S+ MY
Sbjct: 102 GVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMY 161
Query: 282 CKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341
+CG + +A VF+ M KD+V+ ++++ YA+ G + + EM ++ + +++
Sbjct: 162 MRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWN 221
Query: 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392
G++S G +E V F + G P+ S V+ +G + +L R
Sbjct: 222 GILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 232/393 (59%), Gaps = 25/393 (6%)
Query: 122 MHHDLHRERLKVDASFL--STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179
M L R L S L S ++TS G ++ I G L + G +++ GS+LI +
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG------LMFKYGLNLDIFAGSALIDV 498
Query: 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239
YS C + D+ VF+EM V+++V W ++ A + Q+ + + L L+ ++ S P++FTF
Sbjct: 499 YSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTF 558
Query: 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299
++++A ++ G+ HCQ ++ G + N+L+ MY KCG+ E+A F++
Sbjct: 559 ANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAAS 618
Query: 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359
+D+V WNS+I+ YA HG +A+ + E+MM + ++P+ ITF+GV+S+C H GLVE+G
Sbjct: 619 RDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQ 678
Query: 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW------------ 407
F+ M + G++PE +HY C+V LLGRAG L +AR+ I++MP P A++W
Sbjct: 679 FELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGN 738
Query: 408 -----EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIE 462
AAE +L +P+ + + L+N+YA W +A +VR+ MK +G+ PG SWI
Sbjct: 739 VELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIG 798
Query: 463 IMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK 495
I V+ F ++DKS+ + ++I VLD L+ Q++
Sbjct: 799 INKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 136/264 (51%), Gaps = 3/264 (1%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
LK D S+ +TSC S + G I+ + YV +SLI +Y+KC + DA
Sbjct: 346 LKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDAR 405
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247
KVF+ +VV + A+I +++ +W++ L ++R MR ++ P+ TF S+L A
Sbjct: 406 KVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASA 465
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
+LG + H + G I ++LI +Y C ++++ VF+ M KD+V WNS
Sbjct: 466 SLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNS 525
Query: 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367
M AGY Q A++LF E+ R +PD TF ++++ + V+ G+ + + K G
Sbjct: 526 MFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRG 585
Query: 368 LKPELDHYSCVVDLLGRAGLLEEA 391
L+ + ++D+ + G E+A
Sbjct: 586 LECNPYITNALLDMYAKCGSPEDA 609
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 18/261 (6%)
Query: 104 VFDQLLDTPVVDVEKLISM--HHDLHRERLKVDASF------------LSTAVTSCGSTR 149
VF+++ + +V ++S HH ++ E L V F LS+ + +C S
Sbjct: 101 VFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQAC-SGL 159
Query: 150 NIRGG---APYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTA 206
+ RG Q +++GF +VYVG+ LI Y K I A VF+ +P ++ V+WT
Sbjct: 160 DGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTT 219
Query: 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266
+I+ + + + L+L+ + + P+ + +++LSAC+ L G+ H +R G
Sbjct: 220 MISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYG 279
Query: 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFE 326
+ N LI Y KCG V A +FN M K+I+SW ++++GY Q+ L A++LF
Sbjct: 280 LEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFT 339
Query: 327 EMMKQRVKPDAITFLGVISSC 347
M K +KPD +++SC
Sbjct: 340 SMSKFGLKPDMYACSSILTSC 360
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 10/249 (4%)
Query: 165 GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ----EWQVDMC 220
G + Y+ + LI LYS+ ++ A KVFE+MP RN+VSW+ +++A E + +
Sbjct: 74 GLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVF 133
Query: 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT--IRMGFFSYIQVANSLI 278
LE +R ++S PN++ +S + AC+G G+ Q+ ++ GF + V LI
Sbjct: 134 LEFWRTRKDS---PNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLI 190
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338
Y K GN++ A VF+ + K V+W +MI+G + G + ++ LF ++M+ V PD
Sbjct: 191 DFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGY 250
Query: 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
V+S+C +E GK + ++GL+ + + ++D + G + A M
Sbjct: 251 ILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGM 310
Query: 399 PIYPNAVIW 407
P N + W
Sbjct: 311 P-NKNIISW 318
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 103/201 (51%), Gaps = 1/201 (0%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E+ +++ +L R + D + VT+ G+ +++ G + C ++ G N Y+ ++L
Sbjct: 537 EEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNAL 596
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
+ +Y+KC DA+K F+ R+VV W ++I+++A + L++ M + +EPN
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNY 656
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
TF +LSAC+ +G + G +R G + ++S+ + G + +A +
Sbjct: 657 ITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEK 716
Query: 297 MHGKD-IVSWNSMIAGYAQHG 316
M K + W S+++G A+ G
Sbjct: 717 MPTKPAAIVWRSLLSGCAKAG 737
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 259 HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLA 318
H Q I G ++N LI++Y + G + A VF M +++VSW++M++ HG+
Sbjct: 67 HGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIY 126
Query: 319 VRAIDLFEEMMKQRV-KPDAITFLGVISSCRHGGLVEEGKVYF----DSMAKHGLKPELD 373
++ +F E + R P+ I +C GL G+ + K G ++
Sbjct: 127 EESLVVFLEFWRTRKDSPNEYILSSFIQAC--SGLDGRGRWMVFQLQSFLVKSGFDRDVY 184
Query: 374 HYSCVVDLLGRAGLLEEARDFIKQMP 399
+ ++D + G ++ AR +P
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALP 210
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 224/390 (57%), Gaps = 17/390 (4%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
L+ D L +A SC G CL+++TG+ A+V+VGSSL+ +Y+KC I+ A
Sbjct: 112 LRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYAR 171
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
K+F+EMP RNVV+W+ ++ +AQ + + L L++ L ND++F+S++S C S
Sbjct: 172 KMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANST 231
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
L GR H +I+ F S V +SL+S+Y KCG E A VFN + K++ WN+M+
Sbjct: 232 LLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLK 291
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370
YAQH + I+LF+ M +KP+ ITFL V+++C H GLV+EG+ YFD M + ++P
Sbjct: 292 AYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEP 351
Query: 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESR 413
HY+ +VD+LGRAG L+EA + I MPI P +W AA+
Sbjct: 352 TDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKV 411
Query: 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAE 473
L P + H+ L+N YA ++ AA+ RKL++D+G K G SW+E N V+ F A
Sbjct: 412 FELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAG 471
Query: 474 DKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
++ + + EI L L ++M+ GY+ +
Sbjct: 472 ERRHEKSKEIYEKLAELGEEMEKAGYIADT 501
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 153/324 (47%), Gaps = 22/324 (6%)
Query: 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVS 203
S TR+ G +++G V ++LI YSK ++ D+ + FE+ P ++ +
Sbjct: 24 SSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTT 83
Query: 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263
W++II+ FAQ M LE + M L P+D S +C GRS HC ++
Sbjct: 84 WSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSM 143
Query: 264 RMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID 323
+ G+ + + V +SL+ MY KCG + A +F+ M +++V+W+ M+ GYAQ G A+
Sbjct: 144 KTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALW 203
Query: 324 LFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383
LF+E + + + + +F VIS C + L+E G+ K S +V L
Sbjct: 204 LFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYS 263
Query: 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443
+ G+ E A ++P+ N IW A +L+ +H Q + +
Sbjct: 264 KCGVPEGAYQVFNEVPV-KNLGIWNA-----MLKAYAQHSHTQ------------KVIEL 305
Query: 444 RKLMKDKGLKTNPGCSWIEIMNVV 467
K MK G+K N +I +NV+
Sbjct: 306 FKRMKLSGMKPN----FITFLNVL 325
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 98/169 (57%)
Query: 129 ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
E L V+ S+ ++ C ++ + G L+I++ F ++ +VGSSL++LYSKC V
Sbjct: 211 ENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEG 270
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
AY+VF E+PV+N+ W A++ A+AQ +EL++ M+ S ++PN TF ++L+AC+
Sbjct: 271 AYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSH 330
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297
+G + +GR Q + SL+ M + G ++EA+ V NM
Sbjct: 331 AGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNM 379
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 222/383 (57%), Gaps = 18/383 (4%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
S+A +CG+ + R G A + G +N V +S+I+++ K + DA + FE +
Sbjct: 376 FSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLS 435
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
+N+VS+ + + + +L + L + FTF S+LS G++ +G
Sbjct: 436 EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ 495
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317
H Q +++G V N+LISMY KCG+++ A VFN M ++++SW SMI G+A+HG
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555
Query: 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYS 376
A+R ++ F +M+++ VKP+ +T++ ++S+C H GLV EG +F+SM + H +KP+++HY+
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615
Query: 377 CVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPE 419
C+VDLL RAGLL +A +FI MP + ++W AA L L+P
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPN 675
Query: 420 CAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTR 479
A ++QL+N+YA W+++ +R+ MK++ L GCSWIE+ + +++F D ++
Sbjct: 676 EPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPN 735
Query: 480 LSEILPVLDFLVDQMKTLGYVPE 502
+I LD L+ ++K GYVP+
Sbjct: 736 AHQIYDELDRLITEIKRCGYVPD 758
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 21/334 (6%)
Query: 94 GTNSTFGSSNVFDQLLDTPVVDVEKLIS--MHHDLHRERLKV-----------DASFLST 140
G NS + VFD++ + VV +I+ M RE ++ D LS+
Sbjct: 215 GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSS 274
Query: 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV---IIDAYKVFEEMP 197
++C N+ G AIR+G + +V SL+ +Y+KC + D KVF+ M
Sbjct: 275 VFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRME 332
Query: 198 VRNVVSWTAIIAAFAQEWQVDM-CLELY-RMMRNSMLEPNDFTFTSILSACTGSGALGQG 255
+V+SWTA+I + + + + L+ M+ +EPN FTF+S AC G
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVG 392
Query: 256 RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQH 315
+ Q + G S VANS+ISM+ K +E+A F ++ K++VS+N+ + G ++
Sbjct: 393 KQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRN 452
Query: 316 GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375
+A L E+ ++ + A TF ++S + G + +G+ + K GL
Sbjct: 453 LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVC 512
Query: 376 SCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+ ++ + + G ++ A M N + W +
Sbjct: 513 NALISMYSKCGSIDTASRVFNFME-NRNVISWTS 545
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 165/349 (47%), Gaps = 27/349 (7%)
Query: 67 VHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLL---DTPVVDVEKLISMH 123
VH RLI+ ++ DS +S + +G ++ + +VF+ + VV +++ +
Sbjct: 84 VHARLIEFDIEPDSVLYNSLISLYSKSGDSAK--AEDVFETMRRFGKRDVVSWSAMMACY 141
Query: 124 HDLHRE--RLKVDASFL-----------STAVTSCGSTRNIRGGAPYQCLAIRTG-FIAN 169
+ RE +KV FL + + +C ++ + G ++TG F ++
Sbjct: 142 GNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESD 201
Query: 170 VYVGSSLITLYSKCR-VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228
V VG SLI ++ K +AYKVF++M NVV+WT +I Q + + M
Sbjct: 202 VCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMV 261
Query: 229 NSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC---G 285
S E + FT +S+ SAC L G+ H IR G ++ SL+ MY KC G
Sbjct: 262 LSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADG 319
Query: 286 NVEEAVYVFNNMHGKDIVSWNSMIAGYAQH-GLAVRAIDLFEEMMKQ-RVKPDAITFLGV 343
+V++ VF+ M ++SW ++I GY ++ LA AI+LF EM+ Q V+P+ TF
Sbjct: 320 SVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSA 379
Query: 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392
+C + GK K GL + V+ + ++ +E+A+
Sbjct: 380 FKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQ 428
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 142/308 (46%), Gaps = 15/308 (4%)
Query: 103 NVFDQLL--DTPVVDVEKLISMHHDLHRERLK-VDASFLSTAVTSCGSTRNIRGGAPYQC 159
NV D+L+ D+ +S + R+ ++ +D+ S+ + SC R+ R G
Sbjct: 27 NVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHA 86
Query: 160 LAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEM---PVRNVVSWTAIIAAFAQEWQ 216
I + + +SLI+LYSK A VFE M R+VVSW+A++A + +
Sbjct: 87 RLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGR 146
Query: 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-SYIQVAN 275
++++ L PND+ +T+++ AC+ S +G GR ++ G F S + V
Sbjct: 147 ELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGC 206
Query: 276 SLISMYCKCGNVEEAVY-VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK 334
SLI M+ K N E Y VF+ M ++V+W MI Q G AI F +M+ +
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFE 266
Query: 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC-VVDLLGRA---GLLEE 390
D T V S+C + GK + GL +D C +VD+ + G +++
Sbjct: 267 SDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL---VDDVECSLVDMYAKCSADGSVDD 323
Query: 391 ARDFIKQM 398
R +M
Sbjct: 324 CRKVFDRM 331
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 8/217 (3%)
Query: 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVG 173
++ E+ + ++ L V A ++ ++ + +IR G ++ G N V
Sbjct: 453 LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVC 512
Query: 174 SSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233
++LI++YSKC I A +VF M RNV+SWT++I FA+ LE + M ++
Sbjct: 513 NALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVK 572
Query: 234 PNDFTFTSILSACTGSGALGQG-RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292
PN+ T+ +ILSAC+ G + +G R + ++ ++ + C+ G + +A
Sbjct: 573 PNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE 632
Query: 293 VFNNM-HGKDIVSWNSMIAGYAQHG------LAVRAI 322
N M D++ W + + H LA R I
Sbjct: 633 FINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKI 669
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 229/392 (58%), Gaps = 22/392 (5%)
Query: 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEM 196
FL AVT+ ++R G + IR+GF + +YV +SL+ LY+ C + AYKVF++M
Sbjct: 126 FLIKAVTTMA---DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKM 182
Query: 197 PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256
P +++V+W ++I FA+ + + L LY M + ++P+ FT S+LSAC GAL G+
Sbjct: 183 PEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGK 242
Query: 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG 316
H I++G + +N L+ +Y +CG VEEA +F+ M K+ VSW S+I G A +G
Sbjct: 243 RVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 317 LAVRAIDLFEEM-MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLKPELDH 374
AI+LF+ M + + P ITF+G++ +C H G+V+EG YF M ++ ++P ++H
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 375 YSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW----------------EAAESRLL-LE 417
+ C+VDLL RAG +++A ++IK MP+ PN VIW E A ++L LE
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 418 PECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSN 477
P + +V L+N+YA + W ++RK M G+K PG S +E+ N V+ F DKS+
Sbjct: 423 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSH 482
Query: 478 TRLSEILPVLDFLVDQMKTLGYVPEVHEEKVD 509
+ I L + ++++ GYVP++ VD
Sbjct: 483 PQSDAIYAKLKEMTGRLRSEGYVPQISNVYVD 514
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 5/222 (2%)
Query: 189 AYKVFE--EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEPNDFTFTSILSA 245
A+KVF E P+ NV W +I +A+ LYR MR S ++EP+ T+ ++ A
Sbjct: 72 AHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSW 305
T + G + H IR GF S I V NSL+ +Y CG+V A VF+ M KD+V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365
NS+I G+A++G A+ L+ EM + +KPD T + ++S+C G + GK M K
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250
Query: 366 HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
GL L + ++DL R G +EEA+ +M + N+V W
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSW 291
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E+ ++++ +++ + +K D + + +++C + G I+ G N++ + L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPN 235
+ LY++C + +A +F+EM +N VSWT++I A +EL++ M ++ L P
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323
Query: 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY------------IQVANSLISMYCK 283
+ TF IL AC+ HC ++ GF + I+ ++ + +
Sbjct: 324 EITFVGILYACS-----------HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 372
Query: 284 CGNVEEAVYVFNNMHGK-DIVSWNSMIAGYAQHG 316
G V++A +M + ++V W +++ HG
Sbjct: 373 AGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 220/387 (56%), Gaps = 18/387 (4%)
Query: 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193
D + + +C + + G CL+++ G NVYV +LI +Y++C + A VF
Sbjct: 128 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF 187
Query: 194 EEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253
+ + VV + A+I +A+ + + L L+R M+ L+PN+ T S+LS+C G+L
Sbjct: 188 DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLD 247
Query: 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA 313
G+ H + F Y++V +LI M+ KCG++++AV +F M KD +W++MI YA
Sbjct: 248 LGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYA 307
Query: 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLKPEL 372
HG A +++ +FE M + V+PD ITFLG++++C H G VEEG+ YF M +K G+ P +
Sbjct: 308 NHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSI 367
Query: 373 DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW----------------EAAESRLL- 415
HY +VDLL RAG LE+A +FI ++PI P ++W E R+
Sbjct: 368 KHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFE 427
Query: 416 LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDK 475
L+ +V L+NLYA + W+ +RK+MKD+ PGCS IE+ NVV+ F + D
Sbjct: 428 LDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDG 487
Query: 476 SNTRLSEILPVLDFLVDQMKTLGYVPE 502
+ +++ LD +V ++K GYVP+
Sbjct: 488 VKSATTKLHRALDEMVKELKLSGYVPD 514
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 290 AVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349
A ++F M DIV +NSM GY++ + LF E+++ + PD TF ++ +C
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 350 GGLVEEGK 357
+EEG+
Sbjct: 142 AKALEEGR 149
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 262 bits (670), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 235/406 (57%), Gaps = 23/406 (5%)
Query: 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLI 177
K ++++ ++ + K+D L++ + + S ++ GG + I+ GF N +VGS LI
Sbjct: 223 KALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLI 282
Query: 178 TLYSKC---RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQV-DMCLELYRMMRNSMLE 233
YSKC + D+ KVF+E+ ++V W +I+ ++ ++ + ++ +R M+
Sbjct: 283 DFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHR 342
Query: 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS-YIQVANSLISMYCKCGNVEEAVY 292
P+D +F + SAC+ + Q + H I+ S I V N+LIS+Y K GN+++A +
Sbjct: 343 PDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARW 402
Query: 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352
VF+ M + VS+N MI GYAQHG A+ L++ M+ + P+ ITF+ V+S+C H G
Sbjct: 403 VFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGK 462
Query: 353 VEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW---- 407
V+EG+ YF++M + ++PE +HYSC++DLLGRAG LEEA FI MP P +V W
Sbjct: 463 VDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522
Query: 408 -------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454
AA ++++P A +V LAN+YA R W++ A VRK M+ K ++
Sbjct: 523 GACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRK 582
Query: 455 NPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYV 500
PGCSWIE+ + F AED S+ + E+ L+ ++ +MK +GYV
Sbjct: 583 KPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYV 628
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 21/315 (6%)
Query: 104 VFDQLLDTPVVDVEKLISMHHD-------------LHRERLKVDASFLSTAVTSCGSTRN 150
+FD++ V LIS + D + + +VD LS + +C +
Sbjct: 96 LFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVD 155
Query: 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEM-PVRNVVSWTAIIA 209
+ C ++ GF + V ++ +T YSK ++ +A VF M +R+ VSW ++I
Sbjct: 156 LI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIV 213
Query: 210 AFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269
A+ Q + L LY+ M + + FT S+L+A T L GR H + I+ GF
Sbjct: 214 AYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQ 273
Query: 270 YIQVANSLISMYCKCGNVE---EAVYVFNNMHGKDIVSWNSMIAGYAQH-GLAVRAIDLF 325
V + LI Y KCG + ++ VF + D+V WN+MI+GY+ + L+ A+ F
Sbjct: 274 NSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSF 333
Query: 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGK-VYFDSMAKHGLKPELDHYSCVVDLLGR 384
+M + +PD +F+ V S+C + + K ++ ++ H + + ++ L +
Sbjct: 334 RQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYK 393
Query: 385 AGLLEEARDFIKQMP 399
+G L++AR +MP
Sbjct: 394 SGNLQDARWVFDRMP 408
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 36/314 (11%)
Query: 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKC---------------------RV 185
+ R++ G L +++ ++ Y+ + + LYSKC V
Sbjct: 20 AERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNV 79
Query: 186 IIDAY----------KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN 235
I+ AY ++F+E+P + VS+ +I+ +A + + L++ MR E +
Sbjct: 80 IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139
Query: 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN 295
FT + +++AC L + HC ++ GF SY V N+ ++ Y K G + EAV VF
Sbjct: 140 GFTLSGLIAACCDRVDL--IKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFY 197
Query: 296 NMHG-KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354
M +D VSWNSMI Y QH +A+ L++EM+ + K D T V+++ +
Sbjct: 198 GMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLI 257
Query: 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK--QMPIYPNAVIWEAAES 412
G+ + + K G S ++D + G + D K Q + P+ V+W S
Sbjct: 258 GGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMIS 317
Query: 413 RLLLEPECAATHVQ 426
+ E + V+
Sbjct: 318 GYSMNEELSEEAVK 331
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297
TF +L L G+S H ++ S ++N +++Y KCG + A F +
Sbjct: 10 TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69
Query: 298 HGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357
++ S+N ++ YA+ A LF+E+ +PD +++ +IS
Sbjct: 70 EEPNVFSYNVIVKAYAKDSKIHIARQLFDEI----PQPDTVSYNTLISGYADARETFAAM 125
Query: 358 VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
V F M K G E+D ++ L G + D IKQ+
Sbjct: 126 VLFKRMRKLGF--EVDGFT----LSGLIAACCDRVDLIKQL 160
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 221/400 (55%), Gaps = 28/400 (7%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV 201
+ +C ++ G L +R+GF +V V + LI Y KC+ I + +F EM +N
Sbjct: 216 LNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 275
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261
VSW +++AA+ Q + + LY R ++E +DF +S+LSAC G L GRS H
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH 335
Query: 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321
++ I V ++L+ MY KCG +E++ F+ M K++V+ NS+I GYA G A
Sbjct: 336 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA 395
Query: 322 IDLFEEMMKQRV--KPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYSCV 378
+ LFEEM + P+ +TF+ ++S+C G VE G FDSM + +G++P +HYSC+
Sbjct: 396 LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCI 455
Query: 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECA 421
VD+LGRAG++E A +FIK+MPI P +W AAE+ L+P+ +
Sbjct: 456 VDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDS 515
Query: 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLS 481
HV L+N +A W +A VR+ +K G+K G SWI + N V+ F+A+D+S+
Sbjct: 516 GNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNK 575
Query: 482 EILPVLDFLVDQMKTLGYVPEV--------HEEKVDDASH 513
EI L L ++M+ GY P++ EEK + SH
Sbjct: 576 EIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSH 615
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 129/275 (46%)
Query: 125 DLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR 184
++ RE + + A + S R G LA++ G I +V+VG S +Y K R
Sbjct: 98 EMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTR 157
Query: 185 VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS 244
+ DA K+F+E+P RN+ +W A I+ + + +E + R PN TF + L+
Sbjct: 158 LRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLN 217
Query: 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS 304
AC+ L G H +R GF + + V N LI Y KC + + +F M K+ VS
Sbjct: 218 ACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVS 277
Query: 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364
W S++A Y Q+ +A L+ K V+ V+S+C +E G+
Sbjct: 278 WCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAV 337
Query: 365 KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
K ++ + S +VD+ G+ G +E++ +MP
Sbjct: 338 KACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 372
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 1/237 (0%)
Query: 171 YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230
++ + LI +YSK A V P RNVVSWT++I+ AQ L + MR
Sbjct: 43 FLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRRE 102
Query: 231 MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290
+ PNDFTF A G+ H ++ G + V S MYCK ++A
Sbjct: 103 GVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDA 162
Query: 291 VYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350
+F+ + +++ +WN+ I+ G AI+ F E + P++ITF +++C
Sbjct: 163 RKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDW 222
Query: 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
+ G + + G ++ + ++D G+ + + +M NAV W
Sbjct: 223 LHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGT-KNAVSW 278
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
+S+ +++C + G A++ ++VGS+L+ +Y KC I D+ + F+EMP
Sbjct: 313 ISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 372
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMM--RNSMLEPNDFTFTSILSACTGSGALGQG 255
+N+V+ ++I +A + QVDM L L+ M R PN TF S+LSAC+ +GA+ G
Sbjct: 373 EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENG 432
Query: 256 -------RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS-WNS 307
RS + I G Y + ++ M + G VE A M + +S W +
Sbjct: 433 MKIFDSMRSTY--GIEPGAEHY----SCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGA 486
Query: 308 MIAGYAQHG 316
+ HG
Sbjct: 487 LQNACRMHG 495
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 223/404 (55%), Gaps = 21/404 (5%)
Query: 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179
+ M+ + E +V ++ AV + S ++ G I+ GF +N+ V +S++ L
Sbjct: 198 LKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDL 257
Query: 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239
Y +C + +A F EM +++++W +I+ + + L R + PN +TF
Sbjct: 258 YCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFV-PNCYTF 316
Query: 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM-H 298
TS+++AC AL G+ H + R GF +++AN+LI MY KCGN+ ++ VF +
Sbjct: 317 TSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD 376
Query: 299 GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358
+++VSW SM+ GY HG A++LF++M+ ++PD I F+ V+S+CRH GLVE+G
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436
Query: 359 YFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE--------- 408
YF+ M +++G+ P+ D Y+CVVDLLGRAG + EA + +++MP P+ W
Sbjct: 437 YFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAH 496
Query: 409 ---------AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCS 459
AA + L+P+ T+V L+ +YA W ARVRK+M+ G K G S
Sbjct: 497 KHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMS 556
Query: 460 WIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
WI + N V+ F DK S + VL L+++ + GYVPE+
Sbjct: 557 WILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPEL 600
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 157/319 (49%), Gaps = 15/319 (4%)
Query: 103 NVFDQLLDTPVVDVEKLISMH-------------HDLHRERLKVDASFLSTAVTSCGSTR 149
++FD++ D VV +I+ + H++ ++ + LS+ + SC + +
Sbjct: 66 SLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMK 125
Query: 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY-KVFEEMPVRNVVSWTAII 208
+ GA + ++ G ++YV ++++ +Y+ C V ++A +F ++ V+N V+WT +I
Sbjct: 126 VLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLI 185
Query: 209 AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268
F L++Y+ M E + T + A ++ G+ H I+ GF
Sbjct: 186 TGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQ 245
Query: 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328
S + V NS++ +YC+CG + EA + F+ M KD+++WN++I+ + + A+ +F+
Sbjct: 246 SNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISEL-ERSDSSEALLMFQRF 304
Query: 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL 388
Q P+ TF ++++C + + G+ + + G ++ + ++D+ + G +
Sbjct: 305 ESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNI 364
Query: 389 EEARDFIKQMPIYPNAVIW 407
+++ ++ N V W
Sbjct: 365 PDSQRVFGEIVDRRNLVSW 383
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 5/230 (2%)
Query: 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM 231
+ ++LI Y + ++ +A +F+EMP R+VV+WTA+I +A E + M
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106
Query: 232 LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG-NVEEA 290
PN+FT +S+L +C L G H +++G + V N++++MY C +E A
Sbjct: 107 TSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAA 166
Query: 291 VYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ--RVKPDAITFLGVISSCR 348
+F ++ K+ V+W ++I G+ G + + ++++M+ + V P IT + +
Sbjct: 167 CLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITI--AVRASA 224
Query: 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
V GK S+ K G + L + ++DL R G L EA+ + +M
Sbjct: 225 SIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEM 274
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%)
Query: 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332
+A +LI Y + G VEEA +F+ M +D+V+W +MI GYA RA + F EM+KQ
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106
Query: 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392
P+ T V+ SCR+ ++ G + + K G++ L + ++++ + EA
Sbjct: 107 TSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAA 166
Query: 393 DFIKQMPIYPNAVIW 407
I + N V W
Sbjct: 167 CLIFRDIKVKNDVTW 181
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/516 (30%), Positives = 252/516 (48%), Gaps = 58/516 (11%)
Query: 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTN 96
K SS LH A +V D I + S T + + + + L+ N N
Sbjct: 196 KCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYN 255
Query: 97 STFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAP 156
+ S V + V +++S +++D + + +C + ++ G
Sbjct: 256 AMI-SGYVNRGFYQEALEMVRRMVS-------SGIELDEFTYPSVIRACATAGLLQLGKQ 307
Query: 157 YQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQE-- 214
+R + + +SL++LY KC +A +FE+MP +++VSW A+++ +
Sbjct: 308 VHAYVLRREDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH 366
Query: 215 ------------------WQV-----------DMCLELYRMMRNSMLEPNDFTFTSILSA 245
W + + L+L+ M+ EP D+ F+ + +
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426
Query: 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSW 305
C GA G+ H Q +++GF S + N+LI+MY KCG VEEA VF M D VSW
Sbjct: 427 CAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSW 486
Query: 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365
N++IA QHG A+D++EEM+K+ ++PD IT L V+++C H GLV++G+ YFDSM
Sbjct: 487 NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMET 546
Query: 366 -HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE---------------- 408
+ + P DHY+ ++DLL R+G +A I+ +P P A IWE
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGI 606
Query: 409 -AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVV 467
AA+ L PE T++ L+N++A W++ ARVRKLM+D+G+K CSWIE+ V
Sbjct: 607 IAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQV 666
Query: 468 YRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
+ F +D S+ + L L +M+ LGYVP+
Sbjct: 667 HTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDT 702
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 141/320 (44%), Gaps = 69/320 (21%)
Query: 157 YQCLAIRTGFIANVYVGSSLITLYSKC----RVIIDAYKVFEEMPVRNVVSWTAIIAAFA 212
+ A+++G V ++L+++YSKC ++ A KVF+E+ ++ SWT ++ +
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230
Query: 213 QEWQVDM--------------------------------CLELYRMMRNSMLEPNDFTFT 240
+ D+ LE+ R M +S +E ++FT+
Sbjct: 231 KNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYP 290
Query: 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK 300
S++ AC +G L G+ H +R FS+ NSL+S+Y KCG +EA +F M K
Sbjct: 291 SVIRACATAGLLQLGKQVHAYVLRREDFSF-HFDNSLVSLYYKCGKFDEARAIFEKMPAK 349
Query: 301 DIVSWNSMIAGY-------------------------------AQHGLAVRAIDLFEEMM 329
D+VSWN++++GY A++G + LF M
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409
Query: 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389
++ +P F G I SC G G+ Y + K G L + ++ + + G++E
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVE 469
Query: 390 EARDFIKQMPIYPNAVIWEA 409
EAR + MP ++V W A
Sbjct: 470 EARQVFRTMPCL-DSVSWNA 488
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 48/297 (16%)
Query: 174 SSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM 231
+++++ Y I A VFE+ PV R+ V + A+I F+ + L+ M++
Sbjct: 84 TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 232 LEPNDFTFTSILSACT-GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN---- 286
+P++FTF S+L+ + Q H ++ G V+N+L+S+Y KC +
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSL 203
Query: 287 VEEAVYVFNNMHGKD--------------------------------IVSWNSMIAGYAQ 314
+ A VF+ + KD +V++N+MI+GY
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 315 HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK-VYFDSMAKHGLKPELD 373
G A+++ M+ ++ D T+ VI +C GL++ GK V+ + + D
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323
Query: 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430
+ +V L + G +EAR ++MP + V W A LL ++ H+ A L
Sbjct: 324 --NSLVSLYYKCGKFDEARAIFEKMPA-KDLVSWNA-----LLSGYVSSGHIGEAKL 372
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----------- 299
+L R+ H I GF + N LI +YCK + A +F+ +
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 300 ----------------------KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337
+D V +N+MI G++ + AI+LF +M + KPD
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 338 ITFLGVISS 346
TF V++
Sbjct: 149 FTFASVLAG 157
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/424 (34%), Positives = 226/424 (53%), Gaps = 52/424 (12%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKC------- 183
L D L++ +++C + + G + TGF + V ++LI++YS+C
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETAR 334
Query: 184 ----------------RVIIDAY----------KVFEEMPVRNVVSWTAIIAAFAQEWQV 217
++D Y +F + R+VV+WTA+I + Q
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSY 394
Query: 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277
+ L+R M PN +T ++LS + +L G+ H ++ G + V+N+L
Sbjct: 395 GEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNAL 454
Query: 278 ISMYCKCGNVEEAVYVFNNMH-GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD 336
I+MY K GN+ A F+ + +D VSW SMI AQHG A A++LFE M+ + ++PD
Sbjct: 455 ITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD 514
Query: 337 AITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFI 395
IT++GV S+C H GLV +G+ YFD M + P L HY+C+VDL GRAGLL+EA++FI
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFI 574
Query: 396 KQMPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLANLYAGVRCWD 438
++MPI P+ V W AAE LLLEPE + + LANLY+ W+
Sbjct: 575 EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 439 QAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLG 498
+AA++RK MKD +K G SWIE+ + V+ F ED ++ +EI + + D++K +G
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMG 694
Query: 499 YVPE 502
YVP+
Sbjct: 695 YVPD 698
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 63/303 (20%)
Query: 158 QCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQV 217
C I++G + +VY+ ++L+ +YSK + A K+F+EMP+R SW +++A+++ +
Sbjct: 37 HCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDM 96
Query: 218 DMCLELYRMM--RNSM-----------------------------LEPNDFTFTSILSAC 246
D E + + R+S+ +EP FT T++L++
Sbjct: 97 DSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASV 156
Query: 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN----------- 295
+ + G+ H +++G + V+NSL++MY KCG+ A +VF+
Sbjct: 157 AATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWN 216
Query: 296 --------------------NMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VK 334
M +DIV+WNSMI+G+ Q G +RA+D+F +M++ +
Sbjct: 217 AMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLS 276
Query: 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF 394
PD T V+S+C + + GK + G + ++ + R G +E AR
Sbjct: 277 PDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRL 336
Query: 395 IKQ 397
I+Q
Sbjct: 337 IEQ 339
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 231 MLEPNDFTFTSILSACTG--------SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282
M P + +++L CT S + HC+ I+ G + + N+L+++Y
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60
Query: 283 KCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLG 342
K G A +F+ M + SWN++++ Y++ G + F++ + QR D++++
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQ-LPQR---DSVSWTT 116
Query: 343 VISSCRHGGLVEEGKVYFDSMAKHGLKP 370
+I ++ G + M K G++P
Sbjct: 117 MIVGYKNIGQYHKAIRVMGDMVKEGIEP 144
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 205/354 (57%), Gaps = 18/354 (5%)
Query: 174 SSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233
+S+I Y K + A +F +M +N +SWT +I+ + Q L+L+ M+NS +E
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293
P++ + + LSAC GAL QG+ H + + LI MY KCG +EEA+ V
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEV 304
Query: 294 FNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353
F N+ K + +W ++I+GYA HG AI F EM K +KP+ ITF V+++C + GLV
Sbjct: 305 FKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLV 364
Query: 354 EEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW----- 407
EEGK+ F SM + + LKP ++HY C+VDLLGRAGLL+EA+ FI++MP+ PNAVIW
Sbjct: 365 EEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLK 424
Query: 408 ------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTN 455
E E + ++P +V AN++A + WD+AA R+LMK++G+
Sbjct: 425 ACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKV 484
Query: 456 PGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVD 509
PGCS I + + F A D+S+ + +I + +++ GYVPE+ E +D
Sbjct: 485 PGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLD 538
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 34/271 (12%)
Query: 162 IRTGFIANVYVGSSLITL---YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVD 218
++TG + + Y + ++ + + A VF+ + W +I F+ + +
Sbjct: 38 LKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPE 97
Query: 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278
L LY+ M S N +TF S+L AC+ A + H Q ++G+ + + NSLI
Sbjct: 98 RSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLI 157
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG---------------------- 316
+ Y GN + A +F+ + D VSWNS+I GY + G
Sbjct: 158 NSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTT 217
Query: 317 ---------LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367
+ A+ LF EM V+PD ++ +S+C G +E+GK + K
Sbjct: 218 MISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTR 277
Query: 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
++ + ++D+ + G +EEA + K +
Sbjct: 278 IRMDSVLGCVLIDMYAKCGEMEEALEVFKNI 308
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179
+ + H++ ++ D L+ A+++C + G +T + +G LI +
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDM 291
Query: 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239
Y+KC + +A +VF+ + ++V +WTA+I+ +A + + M+ ++PN TF
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 351
Query: 240 TSILSACTGSGALGQGRSAHCQTIR-MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298
T++L+AC+ +G + +G+ R I+ ++ + + G ++EA M
Sbjct: 352 TAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMP 411
Query: 299 GK-DIVSWNSMIAGYAQHGLAVRAIDLFEEM 328
K + V W +++ H + I+L EE+
Sbjct: 412 LKPNAVIWGALLKACRIH----KNIELGEEI 438
Score = 39.7 bits (91), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 9/182 (4%)
Query: 232 LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE-- 289
LE N + S L C+ L Q H + ++ G +S +C +
Sbjct: 10 LEHNLYETMSCLQRCSKQEELKQ---IHARMLKTGLMQDSYAITKFLS-FCISSTSSDFL 65
Query: 290 --AVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347
A VF+ D WN MI G++ R++ L++ M+ +A TF ++ +C
Sbjct: 66 PYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKAC 125
Query: 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
+ EE + K G + ++ + +++ G + A ++P P+ V W
Sbjct: 126 SNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSW 184
Query: 408 EA 409
+
Sbjct: 185 NS 186
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 225/448 (50%), Gaps = 32/448 (7%)
Query: 104 VFDQLLDTPVVDVEKLIS-------------MHHDLHRERLKVDASFLSTAVTSCGSTRN 150
VF ++ D VV +I+ + ++ E + D ++ + C R
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 412
Query: 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAA 210
+ G +++V ++L+ +Y+KC + +A VF EM V++++SW II
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472
Query: 211 FAQEWQVDMCLELYRMM-RNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269
+++ + L L+ ++ P++ T +L AC A +GR H +R G+FS
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532
Query: 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329
VANSL+ MY KCG + A +F+++ KD+VSW MIAGY HG AI LF +M
Sbjct: 533 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 592
Query: 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH-GLKPELDHYSCVVDLLGRAGLL 388
+ ++ D I+F+ ++ +C H GLV+EG +F+ M ++P ++HY+C+VD+L R G L
Sbjct: 593 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 652
Query: 389 EEARDFIKQMPIYPNAVIWEA-----------------AESRLLLEPECAATHVQLANLY 431
+A FI+ MPI P+A IW A AE LEPE +V +AN+Y
Sbjct: 653 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIY 712
Query: 432 AGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLV 491
A W+Q R+RK + +GL+ NPGCSWIEI V F A D SN I L +
Sbjct: 713 AEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVR 772
Query: 492 DQMKTLGYVPEVHEEKVDDASHKRTEPF 519
+M GY P +D ++ E
Sbjct: 773 ARMIEEGYSPLTKYALIDAEEMEKEEAL 800
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 193/396 (48%), Gaps = 28/396 (7%)
Query: 33 SQKLKQISSSKSLHKALRVLDI-----ISPRTRDS-------TKTEVHLRLIQDFLQTDS 80
+ +L++ S +L A+++L + I PRT S +K+ + + +F++ +
Sbjct: 65 NTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNG 124
Query: 81 KHLDSQ---KFNHDFTGTNSTFGSSNVFDQLLDTPVV-------------DVEKLISMHH 124
+DS K + +T +S VFD++ + D I +
Sbjct: 125 FVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFK 184
Query: 125 DLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR 184
+ +++D+ S S S R++ GG +++GF VG+SL+ Y K +
Sbjct: 185 KMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ 244
Query: 185 VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS 244
+ A KVF+EM R+V+SW +II + + L ++ M S +E + T S+ +
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304
Query: 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS 304
C S + GR+ H ++ F + N+L+ MY KCG+++ A VF M + +VS
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364
Query: 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364
+ SMIAGYA+ GLA A+ LFEEM ++ + PD T V++ C L++EGK + +
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424
Query: 365 KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400
++ L ++ + ++D+ + G ++EA +M +
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 215/387 (55%), Gaps = 17/387 (4%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
+K D L + + + ++++ G ++ G + SL T+Y+KC + A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
+F++M N++ W A+I+ +A+ ++++ M N + P+ + TS +SAC G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
+L Q RS + R + + ++++LI M+ KCG+VE A VF+ +D+V W++MI
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370
GY HG A AI L+ M + V P+ +TFLG++ +C H G+V EG +F+ MA H + P
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINP 457
Query: 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESR 413
+ HY+CV+DLLGRAG L++A + IK MP+ P +W AA+
Sbjct: 458 QQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQL 517
Query: 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAE 473
++P +VQL+NLYA R WD+ A VR MK+KGL + GCSW+E+ + FR
Sbjct: 518 FSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVG 577
Query: 474 DKSNTRLSEILPVLDFLVDQMKTLGYV 500
DKS+ R EI ++++ ++K G+V
Sbjct: 578 DKSHPRYEEIERQVEWIESRLKEGGFV 604
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 190/371 (51%), Gaps = 18/371 (4%)
Query: 54 IISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPV 113
+I T + ++H RL+ LQ S L ++ + + + TF + VFD L +
Sbjct: 27 LIDSATHKAQLKQIHARLLVLGLQF-SGFLITKLIHASSSFGDITF-ARQVFDDLPRPQI 84
Query: 114 VDVEKLIS-------------MHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCL 160
+I M+ ++ R+ D+ + +C +++ G
Sbjct: 85 FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144
Query: 161 AIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVD 218
R GF A+V+V + LI LY+KCR + A VFE +P+ R +VSWTAI++A+AQ +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278
LE++ MR ++P+ S+L+A T L QGRS H ++MG + SL
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338
+MY KCG V A +F+ M +++ WN+MI+GYA++G A AID+F EM+ + V+PD I
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324
Query: 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+ IS+C G +E+ + ++ + + + ++ S ++D+ + G +E AR +
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR-LVFDR 383
Query: 399 PIYPNAVIWEA 409
+ + V+W A
Sbjct: 384 TLDRDVVVWSA 394
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 229/420 (54%), Gaps = 19/420 (4%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
+K I + + ++ +K D ++ +++C + ++ G LAI+ I+ V V ++L
Sbjct: 380 DKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNL 439
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
I +YSKC+ I A +F +P +NV+SWT+IIA + L R M+ + L+PN
Sbjct: 440 INMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNA 498
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
T T+ L+AC GAL G+ H +R G + N+L+ MY +CG + A FN+
Sbjct: 499 ITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNS 558
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
KD+ SWN ++ GY++ G ++LF+ M+K RV+PD ITF+ ++ C +V +G
Sbjct: 559 -QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQG 617
Query: 357 KVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA------- 409
+YF M +G+ P L HY+CVVDLLGRAG L+EA FI++MP+ P+ +W A
Sbjct: 618 LMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRI 677
Query: 410 ----------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCS 459
A+ L+ + ++ L NLYA W + A+VR++MK+ GL + GCS
Sbjct: 678 HHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCS 737
Query: 460 WIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEPF 519
W+E+ V+ F ++DK + + EI VL+ ++M +G +D+ R E F
Sbjct: 738 WVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIF 797
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 9/308 (2%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E + H L +K D + +CG ++ G +R G+ ++ V ++L
Sbjct: 178 EAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNAL 237
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
IT+Y KC + A +F+ MP R+++SW A+I+ + + LEL+ MR ++P+
Sbjct: 238 ITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDL 297
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
T TS++SAC G GR H I GF I V NSL MY G+ EA +F+
Sbjct: 298 MTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSR 357
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356
M KDIVSW +MI+GY + L +AID + M + VKPD IT V+S+C G ++ G
Sbjct: 358 MERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTG 417
Query: 357 KVYFDSMAKHGLKPELDHYSCV----VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAES 412
+ K +K L Y V +++ + +++A D +P N + W + +
Sbjct: 418 V----ELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIA 472
Query: 413 RLLLEPEC 420
L L C
Sbjct: 473 GLRLNNRC 480
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 1/284 (0%)
Query: 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSS 175
+E+ + + + + R+ VD V C R G+ +A+ + V +G++
Sbjct: 75 LEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNA 134
Query: 176 LITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELY-RMMRNSMLEP 234
+ ++ + ++DA+ VF +M RN+ SW ++ +A++ D + LY RM+ ++P
Sbjct: 135 FLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKP 194
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294
+ +TF +L C G L +G+ H +R G+ I V N+LI+MY KCG+V+ A +F
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254
Query: 295 NNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354
+ M +DI+SWN+MI+GY ++G+ ++LF M V PD +T VIS+C G
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRR 314
Query: 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
G+ + G ++ + + + AG EA +M
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 1/203 (0%)
Query: 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193
D L++ +++C + R G I TGF ++ V +SL +Y +A K+F
Sbjct: 296 DLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLF 355
Query: 194 EEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253
M +++VSWT +I+ + + D ++ YRMM ++P++ T ++LSAC G L
Sbjct: 356 SRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLD 415
Query: 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA 313
G H I+ SY+ VAN+LI+MY KC +++A+ +F+N+ K+++SW S+IAG
Sbjct: 416 TGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLR 475
Query: 314 QHGLAVRAIDLFEEMMKQRVKPD 336
+ A+ +F MK ++P+
Sbjct: 476 LNNRCFEAL-IFLRQMKMTLQPN 497
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 216 QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275
+++ ++L M+ + ++ F +++ C A +G + + +++ N
Sbjct: 74 KLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGN 133
Query: 276 SLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM-KQRVK 334
+ ++M+ + GN+ +A YVF M +++ SWN ++ GYA+ G A+ L+ M+ VK
Sbjct: 134 AFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVK 193
Query: 335 PDAITFLGVISSCRHGGL--VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392
PD TF V+ +C GG+ + GK + ++G + ++D + ++ + + G ++ AR
Sbjct: 194 PDVYTFPCVLRTC--GGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251
Query: 393 DFIKQMP 399
+MP
Sbjct: 252 LLFDRMP 258
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 206/360 (57%), Gaps = 18/360 (5%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
+++ F+++ V ++L T+YSK I A K+F+E P +++ SW A+I+ + Q + +
Sbjct: 346 LKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281
L+R M+ S PN T T ILSAC GAL G+ H F S I V+ +LI MY
Sbjct: 406 SLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465
Query: 282 CKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341
KCG++ EA +F+ M K+ V+WN+MI+GY HG A+++F EM+ + P +TFL
Sbjct: 466 AKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFL 525
Query: 342 GVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400
V+ +C H GLV+EG F+SM ++G +P + HY+C+VD+LGRAG L+ A FI+ M I
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSI 585
Query: 401 YPNAVIWEA-----------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443
P + +WE +E L+P+ HV L+N+++ R + QAA V
Sbjct: 586 EPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645
Query: 444 RKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
R+ K + L PG + IEI + F + D+S+ ++ EI L+ L +M+ GY PE
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPET 705
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 1/224 (0%)
Query: 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190
LK ++S + A+++ R+ R G A+ G + + +GS+++ +Y K + DA
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDAR 174
Query: 191 KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYR-MMRNSMLEPNDFTFTSILSACTGS 249
KVF+ MP ++ + W +I+ + + ++++R ++ S + T IL A
Sbjct: 175 KVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAEL 234
Query: 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMI 309
L G H + G +S+ V IS+Y KCG ++ +F DIV++N+MI
Sbjct: 235 QELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMI 294
Query: 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353
GY +G ++ LF+E+M + + T + ++ H L+
Sbjct: 295 HGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 2/187 (1%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
I GF ++ + + L S I A +F + +V + ++ F+ L
Sbjct: 44 ILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSL 103
Query: 222 ELYRMMRNSM-LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280
++ +R S L+PN T+ +SA +G GR H Q + G S + + ++++ M
Sbjct: 104 SVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKM 163
Query: 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPDAIT 339
Y K VE+A VF+ M KD + WN+MI+GY ++ + V +I +F +++ + + D T
Sbjct: 164 YFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTT 223
Query: 340 FLGVISS 346
L ++ +
Sbjct: 224 LLDILPA 230
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 208/356 (58%), Gaps = 19/356 (5%)
Query: 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-RNVVSWTAIIAAFAQEWQVDMCLELYR 225
+ V +++IT Y K + + A +F++M V +N+V+W A+I+ + + + + L+L+R
Sbjct: 214 VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFR 273
Query: 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285
M + PN +S L C+ AL GR H + + + SLISMYCKCG
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCG 333
Query: 286 NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345
+ +A +F M KD+V+WN+MI+GYAQHG A +A+ LF EM+ +++PD ITF+ V+
Sbjct: 334 ELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL 393
Query: 346 SCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404
+C H GLV G YF+SM + + ++P+ DHY+C+VDLLGRAG LEEA I+ MP P+A
Sbjct: 394 ACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA 453
Query: 405 VIWE-----------------AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447
++ AAE L L + AA +VQLAN+YA W+ ARVRK M
Sbjct: 454 AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRM 513
Query: 448 KDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503
K+ + PG SWIEI N V+ FR+ D+ + L I L L +MK GY PE+
Sbjct: 514 KESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPEL 569
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 129 ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
E ++ ++S LS+A+ C ++ G + ++ +V +SLI++Y KC + D
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD 337
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A+K+FE M ++VV+W A+I+ +AQ D L L+R M ++ + P+ TF ++L AC
Sbjct: 338 AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVAN--SLISMYCKCGNVEEAVYVFNNM 297
+G + G A+ +++ + Q + ++ + + G +EEA+ + +M
Sbjct: 398 AGLVNIG-MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSM 447
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 105/222 (47%), Gaps = 10/222 (4%)
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A F+ MP ++ SW +I +A+ +++ EL+ SM+E N+ ++ +++S
Sbjct: 143 AQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFY----SMMEKNEVSWNAMISGYIE 198
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-GKDIVSWNS 307
G L + ++ + ++I+ Y K VE A +F +M K++V+WN+
Sbjct: 199 CGDLEKA----SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNA 254
Query: 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367
MI+GY ++ + LF M+++ ++P++ + C ++ G+ ++K
Sbjct: 255 MISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKST 314
Query: 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
L ++ + ++ + + G L +A + M + V W A
Sbjct: 315 LCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNA 355
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 97/213 (45%), Gaps = 35/213 (16%)
Query: 186 IIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS- 244
I A +VF M +N ++W +++ +++ +E +++ + + EP+ F++ +LS
Sbjct: 77 IDGALRVFHGMRAKNTITWNSLLIGISKD--PSRMMEAHQLF-DEIPEPDTFSYNIMLSC 133
Query: 245 ----------------------ACTGSGALGQGRSAHCQTIRMGFFSYIQVA----NSLI 278
A + G R + R F+S ++ N++I
Sbjct: 134 YVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMI 193
Query: 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDA 337
S Y +CG++E+A + F + +V+W +MI GY + + ++L E M K V +
Sbjct: 194 SGYIECGDLEKASHFFKVAPVRGVVAWTAMITGY----MKAKKVELAEAMFKDMTVNKNL 249
Query: 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370
+T+ +IS E+G F +M + G++P
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA-LGQGRSAHCQTIRM 265
IIA + +D L ++ MR N T+ S+L + + + + +
Sbjct: 67 IIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRMMEAHQLFDEIPEP 122
Query: 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLF 325
FSY N ++S Y + N E+A F+ M KD SWN+MI GYA+ G +A +LF
Sbjct: 123 DTFSY----NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELF 178
Query: 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385
MM++ + +++ +IS G +E+ +F G+ ++ ++ +A
Sbjct: 179 YSMMEK----NEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVA----WTAMITGYMKA 230
Query: 386 GLLEEARDFIKQMPIYPNAVIWEA 409
+E A K M + N V W A
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNA 254
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 275 NSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQH-GLAVRAIDLFEEMMKQRV 333
N +I+ + G+++ A+ VF+ M K+ ++WNS++ G ++ + A LF+E+
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI----P 120
Query: 334 KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD--HYSCVVDLLGRAGLLEEA 391
+PD ++ ++S E+ + +FD M P D ++ ++ R G +E+A
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRM------PFKDAASWNTMITGYARRGEMEKA 174
Query: 392 RDFIKQMPIYPNAVIWEAAESRLLLEPECA----ATHVQLANLYAGVRCWDQAARVRKLM 447
R+ M + N V W A S + EC A+H GV W A + M
Sbjct: 175 RELFYSM-MEKNEVSWNAMISGYI---ECGDLEKASHFFKVAPVRGVVAW--TAMITGYM 228
Query: 448 KDKGLK 453
K K ++
Sbjct: 229 KAKKVE 234
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 253 bits (645), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 230/411 (55%), Gaps = 20/411 (4%)
Query: 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS 174
+ ++ + + D+ + ++ D S + T V++C + +I G GF +N+ + +
Sbjct: 246 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVN 305
Query: 175 SLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234
+LI LYSKC + A +FE +P ++V+SW +I + L L++ M S P
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIR--MGFFSYIQVANSLISMYCKCGNVEEAVY 292
ND T SIL AC GA+ GR H + G + + SLI MY KCG++E A
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352
VFN++ K + SWN+MI G+A HG A + DLF M K ++PD ITF+G++S+C H G+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGM 485
Query: 353 VEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW---- 407
++ G+ F +M + + + P+L+HY C++DLLG +GL +EA + I M + P+ VIW
Sbjct: 486 LDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLL 545
Query: 408 -------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454
AE+ + +EPE ++V L+N+YA W++ A+ R L+ DKG+K
Sbjct: 546 KACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKK 605
Query: 455 NPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHE 505
PGCS IEI +VV+ F DK + R EI +L+ + ++ G+VP+ E
Sbjct: 606 VPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSE 656
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 35/285 (12%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE------- 194
+ SC ++ + G ++ G ++YV +SLI++Y + + DA+KVF+
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200
Query: 195 ------------------------EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230
E+PV++VVSW A+I+ +A+ LEL++ M +
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260
Query: 231 MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290
+ P++ T +++SAC SG++ GR H GF S +++ N+LI +Y KCG +E A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320
Query: 291 VYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350
+F + KD++SWN++I GY L A+ LF+EM++ P+ +T L ++ +C H
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380
Query: 351 GLVEEGK---VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392
G ++ G+ VY D K G+ + ++D+ + G +E A
Sbjct: 381 GAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAH 424
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 32/250 (12%)
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A VF+ + N++ W + A L+LY M + L PN +TF +L +C
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
S A +G+ H +++G + V SLISMY + G +E+A VF+ +D+VS+ ++
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 309 IAGYAQHG-----------LAVR--------------------AIDLFEEMMKQRVKPDA 337
I GYA G + V+ A++LF++MMK V+PD
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397
T + V+S+C G +E G+ + HG L + ++DL + G LE A ++
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 398 MPIYPNAVIW 407
+P Y + + W
Sbjct: 327 LP-YKDVISW 335
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 256 RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE---AVYVFNNMHGKDIVSWNSMIAGY 312
R H Q I++G + + LI + E A+ VF + +++ WN+M G+
Sbjct: 50 RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGH 109
Query: 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL 372
A V A+ L+ M+ + P++ TF V+ SC +EG+ + K G +L
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 169
Query: 373 DHYSCVVDLLGRAGLLEEARDFIKQMP 399
++ ++ + + G LE+A + P
Sbjct: 170 YVHTSLISMYVQNGRLEDAHKVFDKSP 196
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 216/394 (54%), Gaps = 19/394 (4%)
Query: 128 RERLKVDASF-LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186
RE V F LS+ + C + G L ++ GF ++YV ++LI +Y+KC +
Sbjct: 340 REAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKM 399
Query: 187 IDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246
A K+F E+ +N VSW +I + + ++R + + + TF+S L AC
Sbjct: 400 DTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGAC 459
Query: 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWN 306
++ G H I+ + V+NSLI MY KCG+++ A VFN M D+ SWN
Sbjct: 460 ASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWN 519
Query: 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK- 365
++I+GY+ HGL +A+ + + M + KP+ +TFLGV+S C + GL+++G+ F+SM +
Sbjct: 520 ALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRD 579
Query: 366 HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA---------------- 409
HG++P L+HY+C+V LLGR+G L++A I+ +P P+ +IW A
Sbjct: 580 HGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARR 639
Query: 410 -AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVY 468
AE L + P+ AT+V ++N+YAG + W A +RK MK+ G+K PG SWIE V+
Sbjct: 640 SAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVH 699
Query: 469 RFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
F + + I +L++L + GYVP+
Sbjct: 700 YFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPD 733
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 18/294 (6%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
++T ++ + VG L+ LY++ + DA+KVF EMP +VV W+ +IA F Q + +
Sbjct: 274 LKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAV 333
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281
+L+ MR + + PN+FT +SIL+ C G G H +++GF I V+N+LI +Y
Sbjct: 334 DLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVY 393
Query: 282 CKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341
KC ++ AV +F + K+ VSWN++I GY G +A +F E ++ +V +TF
Sbjct: 394 AKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFS 453
Query: 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIY 401
+ +C ++ G K ++ + ++D+ + G ++ A+ +M
Sbjct: 454 SALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETI 513
Query: 402 PNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTN 455
+ W A L + Y+ QA R+ +MKD+ K N
Sbjct: 514 -DVASWNA-----------------LISGYSTHGLGRQALRILDIMKDRDCKPN 549
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 122/246 (49%), Gaps = 1/246 (0%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
++ G+ +N +VG++LI YS C + A VFE + +++V W I++ + + + L
Sbjct: 173 VKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSL 232
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281
+L MR + PN++TF + L A G GA + H Q ++ + +V L+ +Y
Sbjct: 233 KLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLY 292
Query: 282 CKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341
+ G++ +A VFN M D+V W+ MIA + Q+G A+DLF M + V P+ T
Sbjct: 293 TQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLS 352
Query: 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIY 401
+++ C G G+ + K G ++ + ++D+ + ++ A ++
Sbjct: 353 SILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELS-S 411
Query: 402 PNAVIW 407
N V W
Sbjct: 412 KNEVSW 417
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 2/226 (0%)
Query: 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLI 177
K SM + R ++ V S+A+ +C S ++ G LAI+T V V +SLI
Sbjct: 432 KAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLI 491
Query: 178 TLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDF 237
+Y+KC I A VF EM +V SW A+I+ ++ L + +M++ +PN
Sbjct: 492 DMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGL 551
Query: 238 TFTSILSACTGSGALGQGRSAHCQTIR-MGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
TF +LS C+ +G + QG+ IR G ++ ++ + + G +++A+ +
Sbjct: 552 TFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEG 611
Query: 297 M-HGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341
+ + ++ W +M++ A EE++K K +A L
Sbjct: 612 IPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVL 657
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 158 QCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQV 217
C ++ G +++ + L+ Y K DA +F+EMP RN VS+ + AQ +
Sbjct: 72 HCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTL----AQGYAC 127
Query: 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277
+ LY + E N FTS L H +++G+ S V +L
Sbjct: 128 QDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAAL 187
Query: 278 ISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337
I+ Y CG+V+ A VF + KDIV W +++ Y ++G ++ L M P+
Sbjct: 188 INAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNN 247
Query: 338 ITF 340
TF
Sbjct: 248 YTF 250
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297
+ ++L C ++ HC ++ G + N L++ Y K G ++A+ +F+ M
Sbjct: 51 AYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEM 110
Query: 298 HGKDIVSWNSMIAGYA 313
++ VS+ ++ GYA
Sbjct: 111 PERNNVSFVTLAQGYA 126
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 214/390 (54%), Gaps = 22/390 (5%)
Query: 139 STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV 198
S A+ C + ++ GG GF+++ + ++L+ LYS C DA KVF+E+P
Sbjct: 117 SFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPK 176
Query: 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM---LEPNDFTFTSILSACTGSGALGQG 255
R+ VSW + + + + + L L+ M+N + ++P+ T L AC GAL G
Sbjct: 177 RDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFG 236
Query: 256 RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQH 315
+ H G + ++N+L+SMY +CG++++A VF M +++VSW ++I+G A +
Sbjct: 237 KQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMN 296
Query: 316 GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM--AKHGLKPELD 373
G AI+ F EM+K + P+ T G++S+C H GLV EG ++FD M + +KP L
Sbjct: 297 GFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLH 356
Query: 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW----------------EAAESRLL-L 416
HY CVVDLLGRA LL++A IK M + P++ IW E S L+ L
Sbjct: 357 HYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIEL 416
Query: 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKS 476
+ E A +V L N Y+ V W++ +R LMK+K + T PGCS IE+ V+ F +D S
Sbjct: 417 KAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVS 476
Query: 477 NTRLSEILPVLDFLVDQMKTLGYVPEVHEE 506
+ R EI +L + Q+K GYV E+ E
Sbjct: 477 HPRKEEIYKMLAEINQQLKIAGYVAEITSE 506
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 16/292 (5%)
Query: 134 DASFLSTAVTSCGST--RNIRGGAPYQCLAIRTGFIANVYVGS---SLITLYSKCRVIID 188
D LS V+S G R I L +RT I N V S + L R I
Sbjct: 11 DDHLLSLIVSSTGKLHLRQI------HALLLRTSLIRNSDVFHHFLSRLALSLIPRDINY 64
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYR-MMRNSMLEPNDFTFTSILSACT 247
+ +VF + + +I AF+ L+R + RNS L N + + L C
Sbjct: 65 SCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCI 124
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
SG L G H + GF S + +L+ +Y C N +A VF+ + +D VSWN
Sbjct: 125 KSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNV 184
Query: 308 MIAGYAQHGLAVRAIDLFEEMMKQR---VKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364
+ + Y ++ + LF++M VKPD +T L + +C + G ++ GK D +
Sbjct: 185 LFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFID 244
Query: 365 KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416
++GL L+ + +V + R G +++A M N V W A S L +
Sbjct: 245 ENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAM 295
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 234/446 (52%), Gaps = 53/446 (11%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
++ I+M+ + +E + + S + +CG+ +++ G + R VYVG+++
Sbjct: 131 DEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTM 190
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAA-------------------------- 210
I +Y KC I A KVF+EMP R+V+SWT +IAA
Sbjct: 191 IDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWT 250
Query: 211 -----FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265
FAQ + LE + M S + ++ T +SAC GA A +
Sbjct: 251 AMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKS 310
Query: 266 GFF--SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID 323
G+ ++ + ++LI MY KCGNVEEAV VF +M+ K++ +++SMI G A HG A A+
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALH 370
Query: 324 LFEEMMKQ-RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDL 381
LF M+ Q +KP+ +TF+G + +C H GLV++G+ FDSM + G++P DHY+C+VDL
Sbjct: 371 LFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDL 430
Query: 382 LGRAGLLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECAATH 424
LGR G L+EA + IK M + P+ +W AAE LEP+ +
Sbjct: 431 LGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNY 490
Query: 425 VQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMN-VVYRFRAEDKSNTRLSEI 483
+ L+N+YA W RVRKL+K+KGLK P SW+ N +++F + ++ ++I
Sbjct: 491 ILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKI 550
Query: 484 LPVLDFLVDQMKTLGYVPEVHEEKVD 509
L+ LV+++ LGY P++ D
Sbjct: 551 QDKLEELVERLTVLGYQPDLSSVPYD 576
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 126/273 (46%), Gaps = 37/273 (13%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAY--KVFEEMPVRNVVSWTAIIAAFAQEWQVDM 219
+R G + Y+ + LI +K V +D Y +V E + RN WTA+I +A E + D
Sbjct: 73 LRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDE 132
Query: 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279
+ +Y MR + P FTF+++L AC L GR H QT R+ F ++ V N++I
Sbjct: 133 AIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMID 192
Query: 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA----------------------------- 310
MY KC +++ A VF+ M +D++SW +IA
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM 252
Query: 311 --GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368
G+AQ+ A++ F+ M K ++ D +T G IS+C G + K G
Sbjct: 253 VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGY 312
Query: 369 KPELDHY---SCVVDLLGRAGLLEEARDFIKQM 398
P DH S ++D+ + G +EEA + M
Sbjct: 313 SPS-DHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 223/413 (53%), Gaps = 18/413 (4%)
Query: 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS 174
D K + + +H++ + D L+T +CG I G AI++G+ +++V S
Sbjct: 497 DGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS 556
Query: 175 SLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234
++ +Y KC + A F+ +PV + V+WT +I+ + + + ++ MR + P
Sbjct: 557 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLP 616
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294
++FT ++ A + AL QGR H +++ + V SL+ MY KCG++++A +F
Sbjct: 617 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF 676
Query: 295 NNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354
+ +I +WN+M+ G AQHG + LF++M +KPD +TF+GV+S+C H GLV
Sbjct: 677 KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVS 736
Query: 355 EGKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA---- 409
E + SM +G+KPE++HYSC+ D LGRAGL+++A + I+ M + +A ++
Sbjct: 737 EAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAA 796
Query: 410 -------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456
A L LEP ++ +V L+N+YA WD+ R +MK +K +P
Sbjct: 797 CRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDP 856
Query: 457 GCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVD 509
G SWIE+ N ++ F +D+SN + I + ++ +K GYVPE VD
Sbjct: 857 GFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVD 909
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 3/255 (1%)
Query: 154 GAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ 213
G C+A++ G + V +SLI +Y K R A VF+ M R+++SW ++IA AQ
Sbjct: 334 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQ 393
Query: 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG-SGALGQGRSAHCQTIRMGFFSYIQ 272
+ L+ + L+P+ +T TS+L A + L + H I++ S
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF 453
Query: 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332
V+ +LI Y + ++EA +F H D+V+WN+M+AGY Q + + LF M KQ
Sbjct: 454 VSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512
Query: 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392
+ D T V +C + +GK K G +L S ++D+ + G + A+
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 572
Query: 393 DFIKQMPIYPNAVIW 407
+P+ P+ V W
Sbjct: 573 FAFDSIPV-PDDVAW 586
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 127/251 (50%), Gaps = 6/251 (2%)
Query: 161 AIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC 220
AI+ +++ +V ++LI YS+ R + +A +FE ++V+W A++A + Q
Sbjct: 443 AIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKT 501
Query: 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280
L+L+ +M +DFT ++ C A+ QG+ H I+ G+ + V++ ++ M
Sbjct: 502 LKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDM 561
Query: 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340
Y KCG++ A + F+++ D V+W +MI+G ++G RA +F +M V PD T
Sbjct: 562 YVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTI 621
Query: 341 --LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
L SSC +E+G+ + K + + +VD+ + G +++A K++
Sbjct: 622 ATLAKASSCLTA--LEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679
Query: 399 PIYPNAVIWEA 409
+ N W A
Sbjct: 680 EMM-NITAWNA 689
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 171 YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQ-----VDMCLELYR 225
++ ++LI++YSKC + A +VF++MP R++VSW +I+AA+AQ + + L+R
Sbjct: 75 FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFR 134
Query: 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285
++R ++ + T + +L C SG + S H ++G VA +L+++Y K G
Sbjct: 135 ILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFG 194
Query: 286 NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340
V+E +F M +D+V WN M+ Y + G AIDL + P+ IT
Sbjct: 195 KVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 79/139 (56%)
Query: 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF 267
++ + Q L+ + M S +E + TF +L+ +L G+ HC +++G
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346
Query: 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEE 327
+ V+NSLI+MYCK A VF+NM +D++SWNS+IAG AQ+GL V A+ LF +
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406
Query: 328 MMKQRVKPDAITFLGVISS 346
+++ +KPD T V+ +
Sbjct: 407 LLRCGLKPDQYTMTSVLKA 425
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 117/303 (38%), Gaps = 47/303 (15%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
LS + C + + + A + G + +V +L+ +Y K + + +FEEMP
Sbjct: 148 LSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMP 207
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
R+VV W ++ A+ + + ++L +S L PN+ T +L+ +G +
Sbjct: 208 YRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL-RLLARISGDDSDAGQVK 266
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI--------------V 303
+ S I N +S Y G + F +M D+ V
Sbjct: 267 SFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAV 326
Query: 304 SWNSMIAGYAQHGLAVR-AIDL------------------------FEEMMKQRVKPDAI 338
+S+ G H +A++ +DL F+ M ++ D I
Sbjct: 327 KVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSER----DLI 382
Query: 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
++ VI+ GL E F + + GLKP D Y+ + +L A L E KQ+
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKP--DQYT-MTSVLKAASSLPEGLSLSKQV 439
Query: 399 PIY 401
++
Sbjct: 440 HVH 442
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 222/407 (54%), Gaps = 28/407 (6%)
Query: 110 DTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN 169
D+PV + I ++ ++ R +K + + +C S + G Q ++ GF +
Sbjct: 92 DSPV----ESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFD 147
Query: 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229
VYVG++LI LY C+ DA KVF+EM RNVVSW +I+ A + ++++ E + M
Sbjct: 148 VYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIG 207
Query: 230 SMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289
P++ T +LSAC G+ L G+ H Q + ++ +L+ MY K G +E
Sbjct: 208 KRFCPDETTMVVLLSACGGN--LSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEY 265
Query: 290 AVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCR 348
A VF M K++ +W++MI G AQ+G A A+ LF +MMK+ V+P+ +TFLGV+ +C
Sbjct: 266 ARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACS 325
Query: 349 HGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
H GLV++G YF M K H +KP + HY +VD+LGRAG L EA DFIK+MP P+AV+W
Sbjct: 326 HTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVW 385
Query: 408 -------------------EAAESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRKLM 447
E + RL+ LEP+ + V +AN +A R W +AA VR++M
Sbjct: 386 RTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFAEARMWAEAAEVRRVM 445
Query: 448 KDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQM 494
K+ +K G S +E+ +RF + + I +LD Q+
Sbjct: 446 KETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVSIYELLDLFKFQL 492
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 216/405 (53%), Gaps = 19/405 (4%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E+ +S+ ++H D L + + R++ G I+ G ++ V SSL
Sbjct: 158 EEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSL 217
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236
+Y + + D V MPVRN+V+W +I AQ + L LY+MM+ S PN
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277
Query: 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296
TF ++LS+C+ GQG+ H + I++G S + V +SLISMY KCG + +A F+
Sbjct: 278 ITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE 337
Query: 297 MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHGGLVEE 355
+D V W+SMI+ Y HG AI+LF M +Q ++ + + FL ++ +C H GL ++
Sbjct: 338 REDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDK 397
Query: 356 GKVYFDSMA-KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESR- 413
G FD M K+G KP L HY+CVVDLLGRAG L++A I+ MPI + VIW+ S
Sbjct: 398 GLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSAC 457
Query: 414 ----------------LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPG 457
L ++P +A +V LAN++A + W + VRK M+DK +K G
Sbjct: 458 NIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAG 517
Query: 458 CSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
SW E V++F+ D+S ++ EI L L +MK GY P+
Sbjct: 518 ISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPD 562
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 150/326 (46%), Gaps = 36/326 (11%)
Query: 102 SNVFDQLLDTPVVDVEKLIS---MHHDLHRERLKV--DASFLSTAVTSCGSTRNIRGGAP 156
S+V L P + L S + R RL + + S + + SC + +++ G
Sbjct: 6 SSVVRPLSVDPATAIATLCSKGNLREAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQ 65
Query: 157 YQCLAIRTGFIANVYVGSSLITLYSK---------------------CRVIIDAY----- 190
CL + +GF ++ ++ + L+++YSK ++I+ Y
Sbjct: 66 LHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGD 125
Query: 191 -----KVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245
KVF+EMP R + +W A+IA Q + L L+R M P+++T S+ S
Sbjct: 126 LVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSG 185
Query: 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSW 305
G ++ G+ H TI+ G + V +SL MY + G +++ V +M +++V+W
Sbjct: 186 SAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAW 245
Query: 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365
N++I G AQ+G + L++ M +P+ ITF+ V+SSC + +G+ K
Sbjct: 246 NTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK 305
Query: 366 HGLKPELDHYSCVVDLLGRAGLLEEA 391
G + S ++ + + G L +A
Sbjct: 306 IGASSVVAVVSSLISMYSKCGCLGDA 331
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 80/204 (39%), Gaps = 32/204 (15%)
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294
N FT + +CT +L G+ HC + GF S + N L+SMY K G+ AV V+
Sbjct: 43 NTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVY 102
Query: 295 NNMHGKDIVS-------------------------------WNSMIAGYAQHGLAVRAID 323
M K+ +S WN+MIAG Q +
Sbjct: 103 GRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLS 162
Query: 324 LFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383
LF EM PD T V S V G+ K+GL+ +L S + +
Sbjct: 163 LFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM 222
Query: 384 RAGLLEEARDFIKQMPIYPNAVIW 407
R G L++ I+ MP+ N V W
Sbjct: 223 RNGKLQDGEIVIRSMPV-RNLVAW 245
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 226/422 (53%), Gaps = 50/422 (11%)
Query: 119 LISMHHDLHRERLKVDASF-LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLI 177
+I ++ L R+ ++ F SC S + G + G +V ++LI
Sbjct: 92 VIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALI 151
Query: 178 TLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC----------------- 220
+Y K ++DA+KVF+EM R+V+SW ++++ +A+ Q+
Sbjct: 152 DMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTA 211
Query: 221 --------------LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266
++ +R M+ + +EP++ + S+L +C G+L G+ H R G
Sbjct: 212 MISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRG 271
Query: 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFE 326
F V N+LI MY KCG + +A+ +F M GKD++SW++MI+GYA HG A AI+ F
Sbjct: 272 FLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFN 331
Query: 327 EMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRA 385
EM + +VKP+ ITFLG++S+C H G+ +EG YFD M + + ++P+++HY C++D+L RA
Sbjct: 332 EMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARA 391
Query: 386 GLLEEARDFIKQMPIYPNAVIWE-----------------AAESRLLLEPECAATHVQLA 428
G LE A + K MP+ P++ IW A + + LEPE +V LA
Sbjct: 392 GKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLA 451
Query: 429 NLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLD 488
N+YA + W+ +R+RK+++++ +K PG S IE+ N+V F + D S +EI VL
Sbjct: 452 NIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQ 511
Query: 489 FL 490
Sbjct: 512 LF 513
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 32/242 (13%)
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYR-MMRNSMLEPNDFTFTSILSACT 247
A ++F ++ NV + +II A+ + +Y+ ++R S P+ FTF + +C
Sbjct: 61 ATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA 120
Query: 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNS 307
G+ G+ H + G ++ N+LI MY K ++ +A VF+ M+ +D++SWNS
Sbjct: 121 SLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNS 180
Query: 308 MIAGYAQHGLA-------------------------------VRAIDLFEEMMKQRVKPD 336
+++GYA+ G V A+D F EM ++PD
Sbjct: 181 LLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPD 240
Query: 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396
I+ + V+ SC G +E GK + G + + ++++ + G++ +A
Sbjct: 241 EISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFG 300
Query: 397 QM 398
QM
Sbjct: 301 QM 302
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 221/405 (54%), Gaps = 20/405 (4%)
Query: 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-FIANVYVGSSL 176
+ IS+ ++ R++ D L + + +IR Q +R G F+ ++ +G+++
Sbjct: 331 RAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV 390
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN-SMLEPN 235
+ +Y+K ++ A VF +P +V+SW II+ +AQ +E+Y +M + N
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAAN 450
Query: 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN 295
T+ S+L AC+ +GAL QG H + ++ G + + V SL MY KCG +E+A+ +F
Sbjct: 451 QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFY 510
Query: 296 NMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE 355
+ + V WN++IA + HG +A+ LF+EM+ + VKPD ITF+ ++S+C H GLV+E
Sbjct: 511 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 570
Query: 356 GKVYFDSM-AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE------ 408
G+ F+ M +G+ P L HY C+VD+ GRAG LE A FIK M + P+A IW
Sbjct: 571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630
Query: 409 -----------AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPG 457
A+E +EPE HV L+N+YA W+ +R + KGL+ PG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690
Query: 458 CSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502
S +E+ N V F ++++ E+ L L ++K +GYVP+
Sbjct: 691 WSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPD 735
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 140/254 (55%), Gaps = 5/254 (1%)
Query: 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTA 206
+ R + G CLA++ GF+ +VYV +SLI LYS+ + + +A +F+EMPVR++ SW A
Sbjct: 162 ACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNA 221
Query: 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266
+I+ + Q L L N + + T S+LSACT +G +G + H +I+ G
Sbjct: 222 MISGYCQSGNAKEALTL----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG 277
Query: 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFE 326
S + V+N LI +Y + G + + VF+ M+ +D++SWNS+I Y + +RAI LF+
Sbjct: 278 LESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQ 337
Query: 327 EMMKQRVKPDAITFLGVISSCRHGGLVEEGK-VYFDSMAKHGLKPELDHYSCVVDLLGRA 385
EM R++PD +T + + S G + + V ++ K ++ + VV + +
Sbjct: 338 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL 397
Query: 386 GLLEEARDFIKQMP 399
GL++ AR +P
Sbjct: 398 GLVDSARAVFNWLP 411
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 152/277 (54%), Gaps = 3/277 (1%)
Query: 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKV 192
+D+ + + +++C + G +I+ G + ++V + LI LY++ + D KV
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304
Query: 193 FEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252
F+ M VR+++SW +II A+ Q + L++ MR S ++P+ T S+ S + G +
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364
Query: 253 GQGRSAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAG 311
RS T+R G+F I + N+++ MY K G V+ A VFN + D++SWN++I+G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424
Query: 312 YAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP 370
YAQ+G A AI+++ M ++ + + T++ V+ +C G + +G + K+GL
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484
Query: 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
++ + + D+ G+ G LE+A Q+P N+V W
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPW 520
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 12/237 (5%)
Query: 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEW---QVDMCLEL 223
I NV + + L+ LY + A F+ + R+V +W +I+ + + +V C L
Sbjct: 83 IQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 142
Query: 224 YRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283
+ M +S L P+ TF S+L AC + G HC ++ GF + VA SLI +Y +
Sbjct: 143 F--MLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR 197
Query: 284 CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343
V A +F+ M +D+ SWN+MI+GY Q G A A+ L + D++T + +
Sbjct: 198 YKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSL 253
Query: 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400
+S+C G G KHGL+ EL + ++DL G L + + +M +
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 256 RSAHCQTIRMGFFSYIQ---VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGY 312
+SA C R+ IQ ++ L+++YC GNV A + F+++ +D+ +WN MI+GY
Sbjct: 68 QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGY 127
Query: 313 AQHGLA---VRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369
+ G + +R LF M+ + PD TF V+ +CR +++ K++ ++ K G
Sbjct: 128 GRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACR--TVIDGNKIHCLAL-KFGFM 182
Query: 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400
++ + ++ L R + AR +MP+
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPV 213
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 203/369 (55%), Gaps = 18/369 (4%)
Query: 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAA 210
IR G +R G ++ + SSL+ +Y KC I +A +F+++ ++VVSWT++I
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDR 293
Query: 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270
+ + + L+ + S PN++TF +L+AC G+ H R+GF Y
Sbjct: 294 YFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPY 353
Query: 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330
++SL+ MY KCGN+E A +V + D+VSW S+I G AQ+G A+ F+ ++K
Sbjct: 354 SFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLK 413
Query: 331 QRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLLGRAGLLE 389
KPD +TF+ V+S+C H GLVE+G +F S+ KH L DHY+C+VDLL R+G E
Sbjct: 414 SGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFE 473
Query: 390 EARDFIKQMPIYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLYA 432
+ + I +MP+ P+ +W EAA+ +EPE T+V +AN+YA
Sbjct: 474 QLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYA 533
Query: 433 GVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVD 492
W++ ++RK M++ G+ PG SW EI + F A D S+ ++I+ L L
Sbjct: 534 AAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRK 593
Query: 493 QMKTLGYVP 501
+MK GYVP
Sbjct: 594 KMKEEGYVP 602
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 35/338 (10%)
Query: 102 SNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLA 161
+N F + +D V+ +KL+ L K AS + C TR + G
Sbjct: 54 ANRFGEAID--VLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHI 111
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSW----------------- 204
+GF+ + + + L+ +Y+KC ++DA KVF+EMP R++ SW
Sbjct: 112 RTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEAR 171
Query: 205 --------------TAIIAAFAQEWQVDMCLELYRMM-RNSMLEPNDFTFTSILSACTGS 249
TA++ + ++ Q + L LY +M R PN FT + ++A
Sbjct: 172 KLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAV 231
Query: 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMI 309
+ +G+ H +R G S + +SL+ MY KCG ++EA +F+ + KD+VSW SMI
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMI 291
Query: 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369
Y + LF E++ +P+ TF GV+++C E GK M + G
Sbjct: 292 DRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFD 351
Query: 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
P S +VD+ + G +E A+ + P P+ V W
Sbjct: 352 PYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSW 388
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 144/418 (34%), Positives = 225/418 (53%), Gaps = 55/418 (13%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
S+ + SC + + G ++ G + YV + L+ +Y+K ++ A KVF+ MP
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELY--------------------------------R 225
R++VS TA+I +A++ V+ L+ +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285
++ +P++ T + LSAC+ GAL GR H ++V LI MY KCG
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 286 NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK-QRVKPDAITFLGVI 344
++EEAV VFN+ KDIV+WN+MIAGYA HG + A+ LF EM ++P ITF+G +
Sbjct: 309 SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTL 368
Query: 345 SSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPN 403
+C H GLV EG F+SM + +G+KP+++HY C+V LLGRAG L+ A + IK M + +
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428
Query: 404 AVIW-----------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446
+V+W E AE + L + + +V L+N+YA V ++ A+VR L
Sbjct: 429 SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNL 488
Query: 447 MKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504
MK+KG+ PG S IEI N V+ FRA D+ +++ EI +L + +++K+ GYVP +
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTN 546
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 35/237 (14%)
Query: 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC-TGSGALGQGRSAHCQT 262
+TA I + D LY + +S + PN+FTF+S+L +C T SG L H
Sbjct: 98 FTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIH---THVLK 154
Query: 263 IRMGFFSYIQV-----------------------------ANSLISMYCKCGNVEEAVYV 293
+G Y+ + ++I+ Y K GNVE A +
Sbjct: 155 FGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARAL 214
Query: 294 FNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHGGL 352
F++M +DIVSWN MI GYAQHG A+ LF++++ + + KPD IT + +S+C G
Sbjct: 215 FDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGA 274
Query: 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409
+E G+ + ++ + + ++D+ + G LEEA P + V W A
Sbjct: 275 LETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNA 330
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340
Y G + ++ +F+ D+ + + I + +GL +A L+ +++ + P+ TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
++ SC + GK+ + K GL + + +VD+ + G + A+ +MP
Sbjct: 134 SSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 245 bits (625), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 235/455 (51%), Gaps = 41/455 (9%)
Query: 88 FNHD----------FTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRER------- 130
FNHD ++G+ + +FD++ D VV L S + R R
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 131 ------LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR 184
+K D+ F+ +++C ++ G N +V ++L+ LY+KC
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCG 261
Query: 185 VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS 244
+ A VF+ M +++V+W+ +I +A +EL+ M L+P+ F+ LS
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS 304
+C GAL G R F + + +AN+LI MY KCG + VF M KDIV
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381
Query: 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364
N+ I+G A++G + +F + K + PD TFLG++ C H GL+++G +F++++
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441
Query: 365 -KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA-------------A 410
+ LK ++HY C+VDL GRAG+L++A I MP+ PNA++W A A
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501
Query: 411 ESRL----LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNV 466
E+ L LEP A +VQL+N+Y+ WD+AA VR +M KG+K PG SWIE+
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561
Query: 467 VYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVP 501
V+ F A+DKS+ +I L+ L ++M+ +G+VP
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP 596
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 151/275 (54%), Gaps = 5/275 (1%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV 201
+ +C + + G L ++ GF +V +SL+++YS + DA+K+F+E+P R+V
Sbjct: 118 LKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSV 177
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR--SAH 259
V+WTA+ + + + ++L++ M ++P+ + +LSAC G L G +
Sbjct: 178 VTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKY 237
Query: 260 CQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAV 319
+ + M S+++ +L+++Y KCG +E+A VF++M KDIV+W++MI GYA +
Sbjct: 238 MEEMEMQKNSFVR--TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPK 295
Query: 320 RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379
I+LF +M+++ +KPD + +G +SSC G ++ G+ + +H L + ++
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALI 355
Query: 380 DLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414
D+ + G + + K+M + VI AA S L
Sbjct: 356 DMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGL 389
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 1/219 (0%)
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
+Y +F N+ + ++I F L+L+ +R L + FTF +L ACT
Sbjct: 64 SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
+ + G H ++ GF + SL+S+Y G + +A +F+ + + +V+W ++
Sbjct: 124 ASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTAL 183
Query: 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368
+GY G AIDLF++M++ VKPD+ + V+S+C H G ++ G+ M + +
Sbjct: 184 FSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEM 243
Query: 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
+ + +V+L + G +E+AR M + + V W
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTW 281
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 20/379 (5%)
Query: 147 STR--NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSW 204
STR +++ G I++G ++ V ++LI +Y+KC + D+ K+F M + V+W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477
Query: 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264
+I+A + L++ MR S + P+ TF L C A G+ HC +R
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537
Query: 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDL 324
G+ S +Q+ N+LI MY KCG +E + VF M +D+V+W MI Y +G +A++
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALET 597
Query: 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH-GLKPELDHYSCVVDLLG 383
F +M K + PD++ F+ +I +C H GLV+EG F+ M H + P ++HY+CVVDLL
Sbjct: 598 FADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLS 657
Query: 384 RAGLLEEARDFIKQMPIYPNAVIW-------------EAAE--SRLLLE--PECAATHVQ 426
R+ + +A +FI+ MPI P+A IW E AE SR ++E P+ +
Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSIL 717
Query: 427 LANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPV 486
+N YA +R WD+ + +RK +KDK + NPG SWIE+ V+ F + D S + I
Sbjct: 718 ASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKS 777
Query: 487 LDFLVDQMKTLGYVPEVHE 505
L+ L M GY+P+ E
Sbjct: 778 LEILYSLMAKEGYIPDPRE 796
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 145/279 (51%), Gaps = 1/279 (0%)
Query: 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179
+ + L ++ D + + +C + G + GF ++++VG++L+ +
Sbjct: 91 LEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDM 150
Query: 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239
YS+ ++ A +VF+EMPVR++VSW ++I+ ++ + LE+Y ++NS + P+ FT
Sbjct: 151 YSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTV 210
Query: 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299
+S+L A + QG+ H ++ G S + V N L++MY K +A VF+ M
Sbjct: 211 SSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV 270
Query: 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359
+D VS+N+MI GY + + ++ +F E + Q KPD +T V+ +C H + K
Sbjct: 271 RDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYI 329
Query: 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
++ M K G E + ++D+ + G + ARD M
Sbjct: 330 YNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%)
Query: 129 ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID 188
++ K D +S+ + +CG R++ ++ GF+ V + LI +Y+KC +I
Sbjct: 301 DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMIT 360
Query: 189 AYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248
A VF M ++ VSW +II+ + Q + ++L++MM + + T+ ++S T
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420
Query: 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSM 308
L G+ H I+ G + V+N+LI MY KCG V +++ +F++M D V+WN++
Sbjct: 421 LADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTV 480
Query: 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368
I+ + G + + +M K V PD TFL + C GK + + G
Sbjct: 481 ISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGY 540
Query: 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+ EL + ++++ + G LE + ++M
Sbjct: 541 ESELQIGNALIEMYSKCGCLENSSRVFERM 570
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 4/227 (1%)
Query: 132 KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191
+V + F+S A++S + +R L I G ++ + LI YS R +
Sbjct: 4 RVSSPFISRALSSSSNLNELR---RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLS 60
Query: 192 VFEEM-PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250
VF + P +NV W +II AF++ LE Y +R S + P+ +TF S++ AC G
Sbjct: 61 VFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLF 120
Query: 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIA 310
G + Q + MGF S + V N+L+ MY + G + A VF+ M +D+VSWNS+I+
Sbjct: 121 DAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLIS 180
Query: 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357
GY+ HG A++++ E+ + PD+ T V+ + + +V++G+
Sbjct: 181 GYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQ 227
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 151/293 (51%), Gaps = 6/293 (2%)
Query: 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSL 176
E+ + ++H+L + D+ +S+ + + G+ ++ G A+++G + V V + L
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248
Query: 177 ITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM--LEP 234
+ +Y K R DA +VF+EM VR+ VS+ +I + +++M E RM ++ +P
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYL---KLEMVEESVRMFLENLDQFKP 305
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294
+ T +S+L AC L + + ++ GF V N LI +Y KCG++ A VF
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365
Query: 295 NNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354
N+M KD VSWNS+I+GY Q G + A+ LF+ MM + D IT+L +IS ++
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLK 425
Query: 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
GK + K G+ +L + ++D+ + G + ++ M + V W
Sbjct: 426 FGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGT-GDTVTW 477
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194
A+FL T + C S R G C +R G+ + + +G++LI +YSKC + ++ +VFE
Sbjct: 510 ATFLVT-LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFE 568
Query: 195 EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ 254
M R+VV+WT +I A+ + + LE + M S + P+ F +I+ AC+ SG + +
Sbjct: 569 RMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDE 628
Query: 255 G 255
G
Sbjct: 629 G 629
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 242 ILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-GK 300
I A + S L + R H I +G S + LI Y ++ VF + K
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69
Query: 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360
++ WNS+I ++++GL A++ + ++ + +V PD TF VI +C E G + +
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 361 DSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400
+ + G + +L + +VD+ R GLL AR +MP+
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPV 169
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 216/402 (53%), Gaps = 23/402 (5%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
++ + SC +R G C A+ +GF + YV ++L+T YSKC + A +VF+ MP
Sbjct: 110 FTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMP 169
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
+++V+W ++++ F Q D ++++ MR S EP+ TF S+LSAC +GA+ G
Sbjct: 170 EKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSW 229
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317
H I G +++ +LI++Y +CG+V +A VF+ M ++ +W +MI+ Y HG
Sbjct: 230 VHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGY 289
Query: 318 AVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHY 375
+A++LF +M P+ +TF+ V+S+C H GLVEEG+ + M K + L P ++H+
Sbjct: 290 GQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHH 349
Query: 376 SCVVDLLGRAGLLEEARDFIKQMPIYPNAV---IW-----------------EAAESRLL 415
C+VD+LGRAG L+EA FI Q+ A +W E A+ +
Sbjct: 350 VCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIA 409
Query: 416 LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDK 475
LEP+ HV L+N+YA D+ + +R M L+ G S IE+ N Y F D+
Sbjct: 410 LEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDE 469
Query: 476 SNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTE 517
S+ EI L+ L+ + K +GY P V EE + + E
Sbjct: 470 SHQETGEIYRYLETLISRCKEIGYAP-VSEEVMHQVEEEEKE 510
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 136/250 (54%), Gaps = 5/250 (2%)
Query: 162 IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221
I TG+ + + + LITL R I + +F +P+ + + ++I + ++ C+
Sbjct: 33 IVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCV 92
Query: 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF--SYIQVANSLIS 279
YR M +S + P+++TFTS++ +C AL G+ HC + GF +Y+Q A L++
Sbjct: 93 AYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAA--LVT 150
Query: 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339
Y KCG++E A VF+ M K IV+WNS+++G+ Q+GLA AI +F +M + +PD+ T
Sbjct: 151 FYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSAT 210
Query: 340 FLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
F+ ++S+C G V G + GL + + +++L R G + +AR+ +M
Sbjct: 211 FVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMK 270
Query: 400 IYPNAVIWEA 409
N W A
Sbjct: 271 -ETNVAAWTA 279
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 25/258 (9%)
Query: 100 GSSNVFDQLLDTPVVDVEKLIS-------------MHHDLHRERLKVDASFLSTAVTSCG 146
G+ VFD++ + +V L+S + + + + D++ + +++C
Sbjct: 160 GARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACA 219
Query: 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTA 206
T + G+ I G NV +G++LI LYS+C + A +VF++M NV +WTA
Sbjct: 220 QTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTA 279
Query: 207 IIAAFAQEWQVDMCLELYRMMRNSMLE-PNDFTFTSILSACTGSGALGQGRSAHCQ-TIR 264
+I+A+ +EL+ M + PN+ TF ++LSAC +G + +GRS + + T
Sbjct: 280 MISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKS 339
Query: 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS----WNSMIAGYAQHGLAVR 320
++ ++ M + G ++EA + + + W +M+ H R
Sbjct: 340 YRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMH----R 395
Query: 321 AIDLFEEMMKQRV--KPD 336
DL E+ K+ + +PD
Sbjct: 396 NYDLGVEIAKRLIALEPD 413
Score = 39.3 bits (90), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA 313
Q + H I G+ + LI++ C + +F ++ D +NS+I +
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTS 83
Query: 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373
+ L + + + M+ V P TF VI SC + GK G LD
Sbjct: 84 KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG--LD 141
Query: 374 HY--SCVVDLLGRAGLLEEARDFIKQMP 399
Y + +V + G +E AR +MP
Sbjct: 142 TYVQAALVTFYSKCGDMEGARQVFDRMP 169
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 204/382 (53%), Gaps = 18/382 (4%)
Query: 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200
A+ +C ++ G L++ G NV V +SLI++Y KC+ + A +F ++ R
Sbjct: 343 ALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRT 402
Query: 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC 260
+VSW A+I FAQ + L + MR+ ++P+ FT+ S+++A + H
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462
Query: 261 QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVR 320
+R + V +L+ MY KCG + A +F+ M + + +WN+MI GY HG
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522
Query: 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG-KVYFDSMAKHGLKPELDHYSCVV 379
A++LFEEM K +KP+ +TFL VIS+C H GLVE G K ++ + ++ +DHY +V
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582
Query: 380 DLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EAAESRLLLEPECAA 422
DLLGRAG L EA DFI QMP+ P ++ +AAE L P+
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGG 642
Query: 423 THVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSE 482
HV LAN+Y W++ +VR M +GL+ PGCS +EI N V+ F + ++ +
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKK 702
Query: 483 ILPVLDFLVDQMKTLGYVPEVH 504
I L+ L+ +K GYVP+ +
Sbjct: 703 IYAFLEKLICHIKEAGYVPDTN 724
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 124/213 (58%)
Query: 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSW 204
CG +R G L +++GF +++ + L +Y+KCR + +A KVF+ MP R++VSW
Sbjct: 145 CGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSW 204
Query: 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264
I+A ++Q M LE+ + M L+P+ T S+L A + + G+ H +R
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264
Query: 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDL 324
GF S + ++ +L+ MY KCG++E A +F+ M +++VSWNSMI Y Q+ A+ +
Sbjct: 265 SGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLI 324
Query: 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357
F++M+ + VKP ++ +G + +C G +E G+
Sbjct: 325 FQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 144/279 (51%)
Query: 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179
+ M + E LK + + + + + R I G A+R+GF + V + ++L+ +
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280
Query: 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239
Y+KC + A ++F+ M RNVVSW ++I A+ Q + +++ M + ++P D +
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340
Query: 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299
L AC G L +GR H ++ +G + V NSLISMYCKC V+ A +F +
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400
Query: 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359
+ +VSWN+MI G+AQ+G + A++ F +M + VKPD T++ VI++ + K
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWI 460
Query: 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398
+ + L + + +VD+ + G + AR M
Sbjct: 461 HGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM 499
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 4/265 (1%)
Query: 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSW 204
C S + +R P L + G + + L++L+ + + +A +VFE + + V +
Sbjct: 47 CSSLKELRQILP---LVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 103
Query: 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264
++ FA+ +D L+ + MR +EP + FT +L C L G+ H ++
Sbjct: 104 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163
Query: 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDL 324
GF + L +MY KC V EA VF+ M +D+VSWN+++AGY+Q+G+A A+++
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223
Query: 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384
+ M ++ +KP IT + V+ + L+ GK + G ++ + +VD+ +
Sbjct: 224 VKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK 283
Query: 385 AGLLEEARDFIKQMPIYPNAVIWEA 409
G LE AR M + N V W +
Sbjct: 284 CGSLETARQLFDGM-LERNVVSWNS 307
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 220/400 (55%), Gaps = 23/400 (5%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
+ +T+C + G L I+ GF+ YV +SLIT Y+ C+ I D+ KVF+E
Sbjct: 228 FTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKV 287
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYR-MMRNSMLEPNDFTFTSILSACTGSGALGQGR 256
V WTA+++ ++ + + L ++ M+RNS+L PN TF S L++C+ G L G+
Sbjct: 288 HEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSIL-PNQSTFASGLNSCSALGTLDWGK 346
Query: 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG 316
H +++G + V NSL+ MY GNV +AV VF + K IVSWNS+I G AQHG
Sbjct: 347 EMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHG 406
Query: 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK--VYFDSMAKHGLKPELDH 374
A +F +M++ +PD ITF G++S+C H G +E+G+ Y+ S + + ++ H
Sbjct: 407 RGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQH 466
Query: 375 YSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW-----------------EAAESRLLLE 417
Y+C+VD+LGR G L+EA + I++M + PN ++W +AA + L+
Sbjct: 467 YTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLD 526
Query: 418 PECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSN 477
+ +A +V L+N+YA W +++R MK G+ PG SW+ I + F + D+ +
Sbjct: 527 SKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPH 586
Query: 478 TRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTE 517
S I L+FL +++K LGY P+ D ++ E
Sbjct: 587 C--SRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEE 624
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 102/198 (51%)
Query: 174 SSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233
+S++ Y + + DA K+F++MP +NV+SWT +I Q + L+L++ M ++
Sbjct: 163 NSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIK 222
Query: 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293
FT +++AC + A G H I++GF V+ SLI+ Y C + ++ V
Sbjct: 223 STSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKV 282
Query: 294 FNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353
F+ + + W ++++GY+ + A+ +F M++ + P+ TF ++SC G +
Sbjct: 283 FDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTL 342
Query: 354 EEGKVYFDSMAKHGLKPE 371
+ GK K GL+ +
Sbjct: 343 DWGKEMHGVAVKLGLETD 360
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 112/202 (55%), Gaps = 19/202 (9%)
Query: 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228
+V + + +IT Y++ ++DA +F+EMPVR+VVSW ++I+ + ++ ++L+
Sbjct: 65 HVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLF---- 120
Query: 229 NSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVE 288
+ M E + ++T++++ C SG + Q Q ++ NS++ Y + G V+
Sbjct: 121 DEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAW----NSMVHGYLQFGKVD 176
Query: 289 EAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348
+A+ +F M GK+++SW +MI G Q+ + A+DLF+ M++ +K + F VI++C
Sbjct: 177 DALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACA 236
Query: 349 -----------HGGLVEEGKVY 359
HG +++ G +Y
Sbjct: 237 NAPAFHMGIQVHGLIIKLGFLY 258
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329
++ + +I+ Y + + +A+ +F+ M +D+VSWNSMI+G + G A+ LF+EM
Sbjct: 65 HVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMP 124
Query: 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389
++ V +++ +++ C G V++ + F M + ++ +V + G ++
Sbjct: 125 ERSV----VSWTAMVNGCFRSGKVDQAERLFYQMP----VKDTAAWNSMVHGYLQFGKVD 176
Query: 390 EARDFIKQMPIYPNAVIW 407
+A KQMP N + W
Sbjct: 177 DALKLFKQMP-GKNVISW 193
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 287 VEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346
++EA VFN + + + MI GY + V A++LF+EM + D +++ +IS
Sbjct: 51 IDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVR----DVVSWNSMISG 106
Query: 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404
C G + FD M + + ++ +V+ R+G +++A QMP+ A
Sbjct: 107 CVECGDMNTAVKLFDEMPERSVVS----WTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 223/420 (53%), Gaps = 50/420 (11%)
Query: 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVR 199
+A++SC RNI G +R GF + + ++LI +Y KC A+++F+ M +
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401
Query: 200 NVVSWTAIIAAFAQEWQVDMCLELYRMM----------------RNSMLE---------- 233
VV+W +I+A + + +VD E + M + S+ E
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461
Query: 234 ------PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287
+ T SI SAC GAL + + + G +++ +L+ M+ +CG+
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521
Query: 288 EEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347
E A+ +FN++ +D+ +W + I A G A RAI+LF++M++Q +KPD + F+G +++C
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581
Query: 348 RHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVI 406
HGGLV++GK F SM K HG+ PE HY C+VDLLGRAGLLEEA I+ MP+ PN VI
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI 641
Query: 407 WE-----------------AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449
W AAE +L PE ++V L+N+YA W+ A+VR MK+
Sbjct: 642 WNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 701
Query: 450 KGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVD 509
KGL+ PG S I+I + F + D+S+ + I +LD + + LG+VP++ +D
Sbjct: 702 KGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMD 761
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 1/208 (0%)
Query: 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200
+++C +R G L ++ G+ +++V +SL+ Y++C + A KVF+EM RN
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERN 199
Query: 201 VVSWTAIIAAFAQ-EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAH 259
VVSWT++I +A+ ++ D +RM+R+ + PN T ++SAC L G +
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Query: 260 CQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAV 319
G + ++L+ MY KC ++ A +F+ ++ N+M + Y + GL
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319
Query: 320 RAIDLFEEMMKQRVKPDAITFLGVISSC 347
A+ +F MM V+PD I+ L ISSC
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSC 347
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 132/282 (46%), Gaps = 32/282 (11%)
Query: 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNV 201
+++C ++ G +G N + S+L+ +Y KC I A ++F+E N+
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNL 302
Query: 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261
A+ + + ++ L ++ +M +S + P+ + S +S+C+ + G+S H
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362
Query: 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG----- 316
+R GF S+ + N+LI MY KC + A +F+ M K +V+WNS++AGY ++G
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Query: 317 --------------------------LAVRAIDLFEEMMKQR-VKPDAITFLGVISSCRH 349
L AI++F M Q V D +T + + S+C H
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGH 482
Query: 350 GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEA 391
G ++ K + + K+G++ ++ + +VD+ R G E A
Sbjct: 483 LGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 1/195 (0%)
Query: 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263
+ ++I +A + + L+ M NS + P+ +TF LSAC S A G G H +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 264 RMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID 323
+MG+ + V NSL+ Y +CG ++ A VF+ M +++VSW SMI GYA+ A A+D
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 324 LFEEMMK-QRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382
LF M++ + V P+++T + VIS+C +E G+ + + G++ S +VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281
Query: 383 GRAGLLEEARDFIKQ 397
+ ++ A+ +
Sbjct: 282 MKCNAIDVAKRLFDE 296
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 5/153 (3%)
Query: 259 HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY---VFNNMHGKDI-VSWNSMIAGYAQ 314
H + G + + L++ C+ G E + VF N +NS+I GYA
Sbjct: 52 HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111
Query: 315 HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDH 374
GL AI LF MM + PD TF +S+C G + K G +L
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFV 171
Query: 375 YSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW 407
+ +V G L+ AR +M N V W
Sbjct: 172 QNSLVHFYAECGELDSARKVFDEMS-ERNVVSW 203
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 210/378 (55%), Gaps = 19/378 (5%)
Query: 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197
L++ + +C +RN+ G IR+ A++YV SLI LY KC A VF +
Sbjct: 312 LTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQ 371
Query: 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRS 257
SW +I+++ +E+Y M + ++P+ TFTS+L AC+ AL +G+
Sbjct: 372 KDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQ 431
Query: 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317
H + + ++L+ MY KCGN +EA +FN++ KD+VSW MI+ Y HG
Sbjct: 432 IHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQ 491
Query: 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-AKHGLKPELDHYS 376
A+ F+EM K +KPD +T L V+S+C H GL++EG +F M +K+G++P ++HYS
Sbjct: 492 PREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYS 551
Query: 377 CVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAES---------------RLLLE--P 418
C++D+LGRAG L EA + I+Q P NA + S RLL+E P
Sbjct: 552 CMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYP 611
Query: 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNT 478
+ A+T++ L NLYA WD A RVR MK+ GL+ PGCSWIE+ + V F AED+S+
Sbjct: 612 DDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHL 671
Query: 479 RLSEILPVLDFLVDQMKT 496
R + L L M++
Sbjct: 672 RAENVYECLALLSGHMES 689
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 143/285 (50%)
Query: 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS 174
+ EK + + + + ++ L+ A+++C + G ++ GF + YV S
Sbjct: 188 EAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNS 247
Query: 175 SLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234
+L+ +Y KC + A +VF++MP +++V+W ++I + + C+E+ M P
Sbjct: 248 ALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRP 307
Query: 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294
+ T TSIL AC+ S L G+ H IR + I V SLI +Y KCG A VF
Sbjct: 308 SQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVF 367
Query: 295 NNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354
+ SWN MI+ Y G +A++++++M+ VKPD +TF V+ +C +E
Sbjct: 368 SKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALE 427
Query: 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399
+GK S+++ L+ + S ++D+ + G +EA +P
Sbjct: 428 KGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP 472
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 11/290 (3%)
Query: 154 GAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ 213
G L +++G++ +V V SSL+ +Y+K + ++ +VF+EMP R+V SW +I+ F Q
Sbjct: 126 GRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQ 185
Query: 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQV 273
+ + LEL+ M +S EPN + T +SAC+ L +G+ H + ++ GF V
Sbjct: 186 SGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYV 245
Query: 274 ANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333
++L+ MY KC +E A VF M K +V+WNSMI GY G + +++ M+ +
Sbjct: 246 NSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGT 305
Query: 334 KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393
+P T ++ +C + GK + + + ++ ++DL + G A
Sbjct: 306 RPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAET 365
Query: 394 FIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443
+ + AES ++ ++++ + N + V +DQ V
Sbjct: 366 VFSKTQK-------DVAESWNVM----ISSYISVGNWFKAVEVYDQMVSV 404
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 146/275 (53%), Gaps = 13/275 (4%)
Query: 133 VDASFLSTAVTSC-GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191
+++S L + + C ST+++R + G +V + SLI +Y C+ A
Sbjct: 1 MESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARH 60
Query: 192 VFEEMPVR-NVVSWTAIIAAFAQEWQVDMCLELY-RMMRNSMLEPNDFTFTSILSACTGS 249
VFE +R +V W ++++ +++ LE++ R++ S+ P+ FTF +++ A
Sbjct: 61 VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA---Y 117
Query: 250 GALGQ---GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWN 306
GALG+ GR H ++ G+ + VA+SL+ MY K E ++ VF+ M +D+ SWN
Sbjct: 118 GALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWN 177
Query: 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366
++I+ + Q G A +A++LF M +P++++ IS+C +E GK K
Sbjct: 178 TVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKK 237
Query: 367 GLKPELDHY--SCVVDLLGRAGLLEEARDFIKQMP 399
G ELD Y S +VD+ G+ LE AR+ ++MP
Sbjct: 238 GF--ELDEYVNSALVDMYGKCDCLEVAREVFQKMP 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,548,881
Number of Sequences: 539616
Number of extensions: 7478411
Number of successful extensions: 22839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 17136
Number of HSP's gapped (non-prelim): 2175
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)