Query 044422
Match_columns 519
No_of_seqs 456 out of 3547
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3E-67 6.5E-72 551.9 49.4 471 20-503 122-610 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.3E-65 5E-70 550.1 49.1 471 19-504 251-774 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.3E-57 2.8E-62 482.0 41.5 453 19-503 368-847 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.5E-57 7.7E-62 486.7 41.0 461 17-503 47-625 (857)
5 PLN03218 maturation of RBCL 1; 100.0 4.6E-56 1E-60 470.2 42.8 348 19-410 435-795 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.4E-52 1.2E-56 436.4 38.4 338 103-460 92-430 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 5.4E-21 1.2E-25 209.7 43.2 402 41-452 443-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.8E-21 3.9E-26 213.5 39.1 397 41-449 477-899 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.7E-24 179.1 33.4 293 144-457 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.8 6.9E-18 1.5E-22 166.7 32.9 280 113-398 48-344 (389)
11 PRK15174 Vi polysaccharide exp 99.8 3E-15 6.6E-20 155.6 38.5 277 115-398 91-378 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-15 5.2E-20 156.7 37.7 332 114-451 141-572 (615)
13 PRK15174 Vi polysaccharide exp 99.8 2.2E-15 4.8E-20 156.6 37.2 316 115-451 57-382 (656)
14 KOG4626 O-linked N-acetylgluco 99.8 2.1E-16 4.6E-21 150.4 24.2 340 104-456 122-489 (966)
15 PRK11447 cellulose synthase su 99.7 2.7E-14 5.9E-19 158.6 41.5 252 38-295 121-442 (1157)
16 KOG4626 O-linked N-acetylgluco 99.7 9.7E-16 2.1E-20 146.0 24.6 369 41-437 128-506 (966)
17 PRK11447 cellulose synthase su 99.7 3.9E-14 8.5E-19 157.3 41.3 382 40-450 280-700 (1157)
18 KOG4422 Uncharacterized conser 99.7 3.9E-13 8.4E-18 123.1 34.6 388 41-453 127-554 (625)
19 PRK10049 pgaA outer membrane p 99.7 3.2E-13 6.9E-18 143.6 39.3 390 38-450 24-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.7 8.7E-13 1.9E-17 137.6 35.7 296 137-451 129-497 (615)
21 PRK14574 hmsH outer membrane p 99.6 6.3E-12 1.4E-16 131.5 38.0 390 39-450 44-513 (822)
22 KOG4422 Uncharacterized conser 99.6 2.2E-12 4.8E-17 118.3 27.4 351 41-452 191-592 (625)
23 PRK10049 pgaA outer membrane p 99.6 2E-11 4.4E-16 129.8 39.4 333 114-456 29-426 (765)
24 PRK09782 bacteriophage N4 rece 99.6 6.7E-11 1.5E-15 126.5 40.3 386 37-451 255-707 (987)
25 PRK14574 hmsH outer membrane p 99.6 5.1E-11 1.1E-15 124.8 37.5 147 308-456 298-483 (822)
26 PRK10747 putative protoheme IX 99.5 2.3E-11 4.9E-16 119.5 31.7 287 105-398 89-387 (398)
27 PRK09782 bacteriophage N4 rece 99.5 1.4E-10 3E-15 124.1 35.3 260 169-449 476-739 (987)
28 PF13429 TPR_15: Tetratricopep 99.5 2.4E-13 5.1E-18 127.5 11.3 249 177-447 15-274 (280)
29 PRK10747 putative protoheme IX 99.5 4.4E-10 9.5E-15 110.4 33.5 277 148-449 97-389 (398)
30 TIGR00540 hemY_coli hemY prote 99.4 2.4E-10 5.2E-15 112.9 30.7 288 104-398 88-396 (409)
31 KOG4318 Bicoid mRNA stability 99.4 1.5E-11 3.2E-16 122.4 21.3 256 121-389 11-288 (1088)
32 TIGR00540 hemY_coli hemY prote 99.4 1E-09 2.2E-14 108.4 34.0 280 147-449 96-398 (409)
33 PF13429 TPR_15: Tetratricopep 99.4 1.4E-12 2.9E-17 122.4 12.7 251 142-397 15-273 (280)
34 KOG1155 Anaphase-promoting com 99.4 9.3E-10 2E-14 102.5 30.2 279 115-396 242-531 (559)
35 KOG1126 DNA-binding cell divis 99.4 7.7E-11 1.7E-15 114.5 23.3 277 115-398 334-617 (638)
36 KOG2076 RNA polymerase III tra 99.4 7.2E-10 1.6E-14 111.2 30.4 318 114-448 153-510 (895)
37 KOG1126 DNA-binding cell divis 99.4 6.6E-11 1.4E-15 114.9 20.7 278 150-451 334-621 (638)
38 KOG4318 Bicoid mRNA stability 99.4 3.2E-11 7E-16 120.1 17.2 244 222-504 11-272 (1088)
39 COG3071 HemY Uncharacterized e 99.3 9.6E-09 2.1E-13 94.4 31.2 284 147-455 96-395 (400)
40 PF13041 PPR_2: PPR repeat fam 99.3 3.7E-12 8.1E-17 84.2 6.7 50 199-248 1-50 (50)
41 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 83.6 6.9 50 300-349 1-50 (50)
42 KOG2003 TPR repeat-containing 99.3 4.9E-09 1.1E-13 97.3 28.0 184 248-450 502-689 (840)
43 COG2956 Predicted N-acetylgluc 99.3 9.1E-09 2E-13 91.7 28.4 286 150-456 50-353 (389)
44 COG2956 Predicted N-acetylgluc 99.3 7E-09 1.5E-13 92.5 27.0 278 115-398 50-344 (389)
45 COG3071 HemY Uncharacterized e 99.3 2.3E-08 4.9E-13 92.0 30.7 287 104-398 88-387 (400)
46 KOG0547 Translocase of outer m 99.2 3.6E-08 7.9E-13 92.7 29.1 327 115-448 130-564 (606)
47 KOG2002 TPR-containing nuclear 99.2 6.1E-08 1.3E-12 98.4 31.9 180 115-298 285-479 (1018)
48 TIGR02521 type_IV_pilW type IV 99.2 6.9E-09 1.5E-13 94.2 23.4 194 171-397 32-228 (234)
49 TIGR02521 type_IV_pilW type IV 99.2 1.3E-08 2.8E-13 92.4 24.7 159 238-398 33-195 (234)
50 KOG1155 Anaphase-promoting com 99.2 3.1E-08 6.7E-13 92.5 25.5 289 142-448 234-534 (559)
51 KOG2002 TPR-containing nuclear 99.2 2E-07 4.3E-12 94.9 32.5 312 82-398 146-478 (1018)
52 PRK12370 invasion protein regu 99.2 1.9E-08 4.2E-13 103.3 26.0 173 186-364 320-500 (553)
53 KOG0495 HAT repeat protein [RN 99.1 5.8E-07 1.3E-11 87.6 32.2 341 115-464 531-892 (913)
54 KOG2003 TPR repeat-containing 99.1 2.1E-07 4.5E-12 86.7 27.8 349 41-398 288-686 (840)
55 PRK12370 invasion protein regu 99.1 3.5E-08 7.7E-13 101.3 25.5 243 186-451 277-536 (553)
56 KOG2076 RNA polymerase III tra 99.1 5.1E-07 1.1E-11 91.3 31.6 298 136-450 140-478 (895)
57 PF12569 NARP1: NMDA receptor- 99.1 7E-07 1.5E-11 89.0 32.4 248 114-364 18-332 (517)
58 KOG0495 HAT repeat protein [RN 99.1 3.9E-06 8.5E-11 82.0 35.9 325 114-460 454-790 (913)
59 KOG1129 TPR repeat-containing 99.1 1.5E-08 3.2E-13 90.4 17.8 228 205-451 227-459 (478)
60 KOG1840 Kinesin light chain [C 99.0 5.8E-08 1.3E-12 95.5 22.9 238 202-448 200-477 (508)
61 KOG1915 Cell cycle control pro 99.0 2.9E-06 6.2E-11 79.9 31.0 332 115-452 88-502 (677)
62 KOG1840 Kinesin light chain [C 99.0 1.3E-07 2.9E-12 93.0 22.6 228 171-398 200-476 (508)
63 KOG1174 Anaphase-promoting com 98.9 7.8E-06 1.7E-10 75.8 30.8 299 131-451 190-501 (564)
64 KOG1129 TPR repeat-containing 98.9 5.2E-08 1.1E-12 87.0 16.2 222 173-398 226-455 (478)
65 KOG1915 Cell cycle control pro 98.9 4.9E-06 1.1E-10 78.4 29.5 330 113-451 154-537 (677)
66 PRK11189 lipoprotein NlpI; Pro 98.9 7.8E-07 1.7E-11 83.7 23.8 221 215-451 40-266 (296)
67 KOG1173 Anaphase-promoting com 98.9 1.3E-06 2.8E-11 84.0 24.1 279 131-415 240-534 (611)
68 PF12569 NARP1: NMDA receptor- 98.9 7.5E-06 1.6E-10 81.8 30.2 291 141-449 10-333 (517)
69 KOG1174 Anaphase-promoting com 98.8 5.9E-06 1.3E-10 76.5 26.4 276 115-398 211-497 (564)
70 PF04733 Coatomer_E: Coatomer 98.8 2.1E-07 4.6E-12 86.4 17.3 248 178-450 9-265 (290)
71 PRK11189 lipoprotein NlpI; Pro 98.8 4.9E-06 1.1E-10 78.3 25.2 210 115-331 41-265 (296)
72 cd05804 StaR_like StaR_like; a 98.8 3.1E-05 6.6E-10 75.5 31.7 300 137-451 8-337 (355)
73 KOG3785 Uncharacterized conser 98.8 1E-05 2.2E-10 73.6 25.1 162 276-454 290-494 (557)
74 KOG1173 Anaphase-promoting com 98.7 1.2E-05 2.5E-10 77.6 25.6 262 115-383 259-533 (611)
75 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.9E-13 59.8 4.0 34 164-197 1-34 (34)
76 COG3063 PilF Tfp pilus assembl 98.7 1E-05 2.2E-10 69.5 21.6 190 204-397 38-232 (250)
77 PF04733 Coatomer_E: Coatomer 98.7 1.8E-06 3.9E-11 80.2 18.9 247 143-398 9-262 (290)
78 COG3063 PilF Tfp pilus assembl 98.6 3.3E-05 7.1E-10 66.4 22.1 158 138-297 38-199 (250)
79 KOG0547 Translocase of outer m 98.6 4.3E-06 9.4E-11 79.1 18.0 215 146-365 337-565 (606)
80 PF12854 PPR_1: PPR repeat 98.6 8.9E-08 1.9E-12 56.8 4.6 32 266-297 2-33 (34)
81 cd05804 StaR_like StaR_like; a 98.6 0.00027 5.9E-09 68.8 31.2 253 144-398 52-333 (355)
82 KOG4340 Uncharacterized conser 98.6 2.1E-05 4.5E-10 69.9 20.4 267 173-446 13-335 (459)
83 KOG3081 Vesicle coat complex C 98.5 6.5E-05 1.4E-09 65.9 21.6 249 177-450 15-271 (299)
84 KOG4162 Predicted calmodulin-b 98.5 0.00054 1.2E-08 68.9 30.6 388 38-450 332-783 (799)
85 KOG0985 Vesicle coat protein c 98.5 0.00014 3.1E-09 74.8 26.1 202 170-398 1104-1305(1666)
86 KOG2047 mRNA splicing factor [ 98.4 0.00033 7.1E-09 69.0 26.1 314 136-454 103-510 (835)
87 PRK04841 transcriptional regul 98.4 0.00075 1.6E-08 74.6 32.6 303 140-451 414-761 (903)
88 KOG2047 mRNA splicing factor [ 98.3 0.0047 1E-07 61.2 33.7 111 116-230 154-277 (835)
89 KOG0624 dsRNA-activated protei 98.3 0.0014 3.1E-08 59.8 25.5 288 141-450 44-370 (504)
90 KOG1125 TPR repeat-containing 98.3 3E-05 6.4E-10 75.2 16.0 222 209-448 293-525 (579)
91 KOG2376 Signal recognition par 98.3 0.0046 1E-07 60.6 31.7 393 37-446 20-516 (652)
92 TIGR03302 OM_YfiO outer membra 98.3 7E-05 1.5E-09 68.2 17.7 183 235-451 32-233 (235)
93 KOG1156 N-terminal acetyltrans 98.3 0.0057 1.2E-07 60.7 31.0 329 99-452 75-470 (700)
94 KOG4340 Uncharacterized conser 98.3 0.0013 2.9E-08 58.8 24.3 323 115-450 59-443 (459)
95 KOG1070 rRNA processing protei 98.2 0.00024 5.2E-09 75.7 22.2 205 234-456 1455-1669(1710)
96 PRK10370 formate-dependent nit 98.2 0.00018 3.9E-09 63.1 18.3 150 277-451 22-174 (198)
97 PLN02789 farnesyltranstransfer 98.2 0.0009 2E-08 63.2 24.0 223 205-447 41-299 (320)
98 KOG1070 rRNA processing protei 98.2 0.00059 1.3E-08 72.9 23.8 221 167-391 1455-1690(1710)
99 KOG3081 Vesicle coat complex C 98.2 0.0011 2.5E-08 58.4 21.8 247 142-398 15-268 (299)
100 KOG1128 Uncharacterized conser 98.2 0.00013 2.8E-09 72.9 17.8 228 139-384 402-635 (777)
101 PRK14720 transcript cleavage f 98.2 0.00058 1.3E-08 72.0 23.5 168 134-331 30-198 (906)
102 KOG0548 Molecular co-chaperone 98.2 0.0045 9.8E-08 60.0 27.3 316 115-451 17-456 (539)
103 TIGR00756 PPR pentatricopeptid 98.2 4.2E-06 9E-11 50.3 4.6 33 304-336 2-34 (35)
104 KOG1128 Uncharacterized conser 98.2 0.00051 1.1E-08 68.7 21.2 215 167-398 395-613 (777)
105 PRK15359 type III secretion sy 98.2 0.00012 2.7E-09 60.6 14.8 96 301-398 23-118 (144)
106 TIGR00756 PPR pentatricopeptid 98.2 4.3E-06 9.3E-11 50.2 4.5 34 202-235 1-34 (35)
107 KOG0624 dsRNA-activated protei 98.1 0.0061 1.3E-07 55.8 28.2 329 115-456 53-426 (504)
108 KOG3616 Selective LIM binding 98.1 0.00026 5.7E-09 70.5 18.6 115 278-404 739-855 (1636)
109 PRK04841 transcriptional regul 98.1 0.0054 1.2E-07 67.9 31.8 285 114-398 423-757 (903)
110 PRK10370 formate-dependent nit 98.1 0.00029 6.3E-09 61.8 17.4 115 215-331 53-173 (198)
111 KOG1156 N-terminal acetyltrans 98.1 0.0077 1.7E-07 59.8 28.3 325 105-451 46-435 (700)
112 KOG1125 TPR repeat-containing 98.1 0.00034 7.3E-09 68.1 18.7 248 145-398 295-568 (579)
113 PLN02789 farnesyltranstransfer 98.1 0.0025 5.3E-08 60.3 24.2 201 145-349 47-267 (320)
114 PF13812 PPR_3: Pentatricopept 98.1 6E-06 1.3E-10 49.2 4.5 33 202-234 2-34 (34)
115 COG4783 Putative Zn-dependent 98.1 0.004 8.6E-08 59.9 25.2 179 269-451 272-455 (484)
116 KOG3617 WD40 and TPR repeat-co 98.1 0.00097 2.1E-08 67.5 21.6 255 134-447 725-993 (1416)
117 COG5010 TadD Flp pilus assembl 98.1 0.0015 3.2E-08 57.6 20.4 156 240-398 70-228 (257)
118 KOG2376 Signal recognition par 98.1 0.014 3.1E-07 57.3 30.3 212 113-337 25-258 (652)
119 PF13812 PPR_3: Pentatricopept 98.1 8E-06 1.7E-10 48.7 4.5 33 303-335 2-34 (34)
120 TIGR03302 OM_YfiO outer membra 98.1 0.00053 1.1E-08 62.4 18.7 61 170-230 33-99 (235)
121 PRK15359 type III secretion sy 98.0 9.3E-05 2E-09 61.3 12.0 109 323-451 14-122 (144)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00031 6.7E-09 67.7 16.7 128 272-402 170-298 (395)
123 KOG3616 Selective LIM binding 98.0 0.00098 2.1E-08 66.6 19.9 162 214-398 745-908 (1636)
124 KOG3617 WD40 and TPR repeat-co 98.0 0.0017 3.7E-08 65.8 21.7 225 114-364 742-994 (1416)
125 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00024 5.3E-09 68.4 15.4 126 171-298 170-295 (395)
126 COG5010 TadD Flp pilus assembl 98.0 0.0016 3.4E-08 57.4 18.6 152 174-327 70-227 (257)
127 KOG0985 Vesicle coat protein c 98.0 0.012 2.7E-07 61.3 27.0 232 184-446 1089-1337(1666)
128 PRK15179 Vi polysaccharide bio 98.0 0.0025 5.4E-08 66.6 23.0 130 134-265 85-217 (694)
129 KOG4162 Predicted calmodulin-b 97.9 0.035 7.5E-07 56.5 29.3 326 123-451 311-750 (799)
130 PRK14720 transcript cleavage f 97.9 0.0027 5.9E-08 67.1 21.2 252 165-454 25-288 (906)
131 PRK15179 Vi polysaccharide bio 97.8 0.0058 1.3E-07 63.9 23.6 233 131-386 24-269 (694)
132 PF08579 RPM2: Mitochondrial r 97.8 0.00036 7.8E-09 53.0 10.3 82 304-385 27-117 (120)
133 KOG3785 Uncharacterized conser 97.8 0.00097 2.1E-08 61.0 14.4 281 115-407 166-497 (557)
134 PF09976 TPR_21: Tetratricopep 97.8 0.0032 6.9E-08 52.3 16.7 126 304-446 14-143 (145)
135 PF01535 PPR: PPR repeat; Int 97.8 3.8E-05 8.2E-10 44.5 3.6 30 203-232 2-31 (31)
136 COG4783 Putative Zn-dependent 97.8 0.0078 1.7E-07 57.9 20.6 114 211-327 316-433 (484)
137 KOG1914 mRNA cleavage and poly 97.8 0.05 1.1E-06 53.1 28.2 79 318-398 347-427 (656)
138 KOG0548 Molecular co-chaperone 97.7 0.0085 1.9E-07 58.2 20.9 102 143-246 10-114 (539)
139 KOG2053 Mitochondrial inherita 97.7 0.076 1.6E-06 55.1 32.0 213 115-332 24-256 (932)
140 PF01535 PPR: PPR repeat; Int 97.7 4E-05 8.7E-10 44.4 3.5 29 304-332 2-30 (31)
141 TIGR02552 LcrH_SycD type III s 97.7 0.0014 3E-08 53.7 13.4 89 241-330 22-113 (135)
142 TIGR02552 LcrH_SycD type III s 97.7 0.0017 3.6E-08 53.2 13.8 94 271-365 17-113 (135)
143 PF08579 RPM2: Mitochondrial r 97.7 0.00079 1.7E-08 51.2 10.2 80 204-283 28-116 (120)
144 PF10037 MRP-S27: Mitochondria 97.6 0.00067 1.5E-08 65.7 11.9 120 165-284 61-186 (429)
145 PF09976 TPR_21: Tetratricopep 97.6 0.0056 1.2E-07 50.8 16.1 83 244-326 56-142 (145)
146 PRK15363 pathogenicity island 97.6 0.0025 5.4E-08 52.3 13.3 115 343-496 41-155 (157)
147 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.3E-08 64.3 12.7 118 268-385 63-186 (429)
148 KOG3060 Uncharacterized conser 97.5 0.068 1.5E-06 47.2 20.9 116 214-331 99-220 (289)
149 PF06239 ECSIT: Evolutionarily 97.5 0.0016 3.5E-08 56.0 10.6 100 198-297 44-165 (228)
150 PF06239 ECSIT: Evolutionarily 97.4 0.0019 4E-08 55.6 10.4 97 291-387 34-153 (228)
151 PF12895 Apc3: Anaphase-promot 97.4 0.00051 1.1E-08 50.9 6.3 81 350-446 2-83 (84)
152 KOG1127 TPR repeat-containing 97.4 0.067 1.5E-06 56.1 22.3 159 137-298 494-657 (1238)
153 PRK02603 photosystem I assembl 97.3 0.0096 2.1E-07 51.0 13.7 84 203-287 37-122 (172)
154 cd00189 TPR Tetratricopeptide 97.2 0.0061 1.3E-07 45.5 11.1 92 305-398 3-94 (100)
155 cd00189 TPR Tetratricopeptide 97.2 0.0041 8.9E-08 46.5 10.1 91 204-296 3-93 (100)
156 KOG3060 Uncharacterized conser 97.2 0.13 2.9E-06 45.4 22.5 160 203-366 54-220 (289)
157 KOG2053 Mitochondrial inherita 97.2 0.19 4.2E-06 52.2 23.7 73 212-287 54-126 (932)
158 PF12895 Apc3: Anaphase-promot 97.2 0.00099 2.1E-08 49.4 5.7 81 315-397 2-83 (84)
159 PF04840 Vps16_C: Vps16, C-ter 97.2 0.1 2.2E-06 49.3 20.2 110 304-447 179-288 (319)
160 PRK15363 pathogenicity island 97.1 0.025 5.4E-07 46.5 13.2 83 180-263 45-130 (157)
161 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0095 2.1E-07 47.2 10.9 59 207-265 45-105 (119)
162 PF05843 Suf: Suppressor of fo 97.0 0.02 4.4E-07 53.3 14.2 127 202-330 2-135 (280)
163 PLN03088 SGT1, suppressor of 97.0 0.0063 1.4E-07 58.8 11.2 105 309-430 9-113 (356)
164 CHL00033 ycf3 photosystem I as 97.0 0.019 4.1E-07 49.0 13.0 62 203-264 37-100 (168)
165 PF14938 SNAP: Soluble NSF att 97.0 0.072 1.6E-06 49.8 17.7 127 273-399 116-264 (282)
166 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.019 4.2E-07 45.4 12.0 95 304-398 4-102 (119)
167 KOG1538 Uncharacterized conser 97.0 0.029 6.2E-07 55.8 14.6 258 168-453 554-849 (1081)
168 PLN03088 SGT1, suppressor of 96.9 0.024 5.1E-07 54.9 13.9 100 277-379 8-110 (356)
169 PF12688 TPR_5: Tetratrico pep 96.9 0.049 1.1E-06 43.1 13.0 106 207-313 7-117 (120)
170 PF05843 Suf: Suppressor of fo 96.9 0.017 3.7E-07 53.8 12.4 127 237-365 2-135 (280)
171 KOG1914 mRNA cleavage and poly 96.8 0.16 3.4E-06 49.8 18.3 173 217-391 347-529 (656)
172 PF13414 TPR_11: TPR repeat; P 96.8 0.004 8.7E-08 44.0 6.1 64 371-449 2-66 (69)
173 PRK02603 photosystem I assembl 96.8 0.058 1.2E-06 46.2 14.3 85 302-387 35-121 (172)
174 CHL00033 ycf3 photosystem I as 96.8 0.068 1.5E-06 45.6 14.6 109 302-419 35-152 (168)
175 PF13432 TPR_16: Tetratricopep 96.8 0.0038 8.3E-08 43.4 5.7 59 378-451 3-61 (65)
176 PF14938 SNAP: Soluble NSF att 96.8 0.11 2.4E-06 48.5 17.0 117 307-450 99-225 (282)
177 KOG2796 Uncharacterized conser 96.8 0.12 2.6E-06 45.9 15.5 132 201-332 177-316 (366)
178 PF13431 TPR_17: Tetratricopep 96.7 0.0014 3.1E-08 38.6 2.5 32 410-441 2-33 (34)
179 PRK10866 outer membrane biogen 96.7 0.18 3.9E-06 45.8 17.3 52 179-230 41-98 (243)
180 KOG1127 TPR repeat-containing 96.7 0.042 9.1E-07 57.5 14.0 178 252-448 474-657 (1238)
181 PF04840 Vps16_C: Vps16, C-ter 96.6 0.64 1.4E-05 44.0 24.4 111 273-399 179-289 (319)
182 COG4235 Cytochrome c biogenesi 96.6 0.067 1.5E-06 48.7 13.2 108 335-455 154-261 (287)
183 KOG0553 TPR repeat-containing 96.5 0.016 3.5E-07 52.4 8.6 110 311-438 90-200 (304)
184 PRK10153 DNA-binding transcrip 96.5 0.2 4.2E-06 51.0 17.3 72 336-409 419-491 (517)
185 KOG0553 TPR repeat-containing 96.4 0.037 8E-07 50.1 10.5 95 279-377 89-187 (304)
186 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.027 5.9E-07 54.4 10.0 119 370-519 73-196 (453)
187 PF07079 DUF1347: Protein of u 96.4 1.1 2.3E-05 43.4 31.5 143 39-183 16-180 (549)
188 PRK10153 DNA-binding transcrip 96.4 0.23 5.1E-06 50.4 17.1 62 235-298 419-480 (517)
189 PF14559 TPR_19: Tetratricopep 96.4 0.015 3.3E-07 40.8 6.4 50 147-197 3-52 (68)
190 PF14559 TPR_19: Tetratricopep 96.3 0.018 3.8E-07 40.4 6.4 51 314-365 3-53 (68)
191 COG4700 Uncharacterized protei 96.2 0.62 1.3E-05 39.3 18.0 98 233-330 86-188 (251)
192 PRK15331 chaperone protein Sic 96.2 0.53 1.2E-05 39.1 15.3 88 346-449 46-133 (165)
193 PF13281 DUF4071: Domain of un 96.2 0.55 1.2E-05 45.0 17.5 169 275-450 145-334 (374)
194 PF03704 BTAD: Bacterial trans 96.2 0.14 3.1E-06 42.4 12.4 72 304-376 64-140 (146)
195 PF13371 TPR_9: Tetratricopept 96.2 0.016 3.5E-07 41.3 5.8 58 379-451 2-59 (73)
196 PF12688 TPR_5: Tetratrico pep 96.2 0.21 4.6E-06 39.5 12.5 89 308-398 7-101 (120)
197 KOG2796 Uncharacterized conser 96.1 0.36 7.8E-06 43.0 14.6 134 303-451 178-316 (366)
198 PF12921 ATP13: Mitochondrial 96.0 0.12 2.5E-06 41.4 10.5 51 333-383 48-99 (126)
199 PRK10866 outer membrane biogen 96.0 1.1 2.5E-05 40.6 22.6 187 199-398 30-238 (243)
200 COG4700 Uncharacterized protei 96.0 0.75 1.6E-05 38.8 15.1 129 266-398 84-219 (251)
201 PRK10803 tol-pal system protei 95.9 0.12 2.6E-06 47.4 11.4 99 338-451 144-247 (263)
202 PF13432 TPR_16: Tetratricopep 95.8 0.042 9.2E-07 38.1 6.6 55 310-365 5-59 (65)
203 PF12921 ATP13: Mitochondrial 95.8 0.17 3.6E-06 40.5 10.4 97 235-349 1-100 (126)
204 KOG1130 Predicted G-alpha GTPa 95.8 0.088 1.9E-06 49.7 9.9 124 273-396 197-339 (639)
205 PF13414 TPR_11: TPR repeat; P 95.7 0.05 1.1E-06 38.2 6.7 60 135-195 3-63 (69)
206 KOG3941 Intermediate in Toll s 95.6 0.21 4.5E-06 44.9 11.2 111 189-299 53-187 (406)
207 KOG3941 Intermediate in Toll s 95.6 0.13 2.9E-06 46.1 9.8 99 289-387 52-173 (406)
208 KOG1130 Predicted G-alpha GTPa 95.5 0.85 1.8E-05 43.4 15.4 144 303-455 196-349 (639)
209 PF03704 BTAD: Bacterial trans 95.5 0.14 2.9E-06 42.5 9.6 69 339-408 64-140 (146)
210 PF13525 YfiO: Outer membrane 95.5 0.39 8.4E-06 42.4 12.8 82 305-390 113-196 (203)
211 COG3898 Uncharacterized membra 95.4 2.6 5.6E-05 40.0 25.9 285 104-398 88-389 (531)
212 KOG2280 Vacuolar assembly/sort 95.4 4.1 8.8E-05 42.1 24.8 293 115-446 452-795 (829)
213 KOG1920 IkappaB kinase complex 95.3 4.8 0.0001 43.9 21.4 88 233-329 932-1026(1265)
214 PF13424 TPR_12: Tetratricopep 95.2 0.11 2.3E-06 37.6 7.1 69 372-449 5-74 (78)
215 KOG1538 Uncharacterized conser 95.2 2 4.4E-05 43.4 17.3 216 136-398 599-843 (1081)
216 PRK10803 tol-pal system protei 95.2 0.45 9.9E-06 43.6 12.4 92 305-398 146-243 (263)
217 COG4235 Cytochrome c biogenesi 95.0 0.77 1.7E-05 42.0 13.2 115 115-231 137-257 (287)
218 PF13424 TPR_12: Tetratricopep 95.0 0.07 1.5E-06 38.6 5.6 23 340-362 49-71 (78)
219 KOG0550 Molecular chaperone (D 94.9 1.9 4.1E-05 41.2 15.5 120 245-365 178-315 (486)
220 PF09205 DUF1955: Domain of un 94.9 1.1 2.3E-05 35.6 11.6 65 203-268 88-152 (161)
221 smart00299 CLH Clathrin heavy 94.8 1.2 2.6E-05 36.5 13.1 87 305-399 10-96 (140)
222 smart00299 CLH Clathrin heavy 94.6 2.1 4.6E-05 34.9 14.4 85 139-227 11-95 (140)
223 KOG0543 FKBP-type peptidyl-pro 94.5 0.85 1.8E-05 43.5 12.6 96 339-450 259-355 (397)
224 PF13371 TPR_9: Tetratricopept 94.4 0.34 7.4E-06 34.3 7.9 54 311-365 4-57 (73)
225 PF13281 DUF4071: Domain of un 94.4 5.2 0.00011 38.5 18.0 73 174-246 145-227 (374)
226 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 1.9 4.2E-05 42.1 14.6 64 167-230 72-141 (453)
227 PF04053 Coatomer_WDAD: Coatom 94.3 1.6 3.4E-05 43.5 14.5 135 135-298 295-429 (443)
228 PF13525 YfiO: Outer membrane 94.2 3.6 7.8E-05 36.2 18.7 171 178-357 13-198 (203)
229 PF08631 SPO22: Meiosis protei 94.2 4.7 0.0001 37.5 24.2 224 212-447 4-272 (278)
230 PF09205 DUF1955: Domain of un 94.2 2.3 5E-05 33.8 12.7 65 304-369 88-152 (161)
231 PF04053 Coatomer_WDAD: Coatom 94.2 1.9 4.2E-05 42.8 15.0 159 209-399 269-429 (443)
232 KOG1920 IkappaB kinase complex 94.2 7.8 0.00017 42.4 19.8 104 279-398 947-1052(1265)
233 KOG0543 FKBP-type peptidyl-pro 94.1 0.54 1.2E-05 44.7 10.3 120 177-298 215-353 (397)
234 KOG2041 WD40 repeat protein [G 93.9 4 8.7E-05 41.8 16.3 187 186-398 679-878 (1189)
235 PF13170 DUF4003: Protein of u 93.5 5.9 0.00013 37.1 16.1 128 151-280 78-226 (297)
236 COG1729 Uncharacterized protei 93.4 0.83 1.8E-05 41.2 9.9 99 339-450 144-244 (262)
237 PF13428 TPR_14: Tetratricopep 93.4 0.2 4.2E-06 31.5 4.3 41 373-428 2-42 (44)
238 PF13170 DUF4003: Protein of u 93.2 2.3 4.9E-05 39.8 12.9 63 318-380 159-225 (297)
239 PF02259 FAT: FAT domain; Int 93.2 8.5 0.00018 37.1 20.0 52 142-197 5-56 (352)
240 PRK15331 chaperone protein Sic 93.2 2.7 5.9E-05 35.0 11.7 82 147-229 49-133 (165)
241 KOG2280 Vacuolar assembly/sort 93.0 13 0.00028 38.6 23.3 136 128-264 425-574 (829)
242 KOG2114 Vacuolar assembly/sort 92.9 2.6 5.6E-05 44.0 13.4 173 204-399 337-517 (933)
243 COG3118 Thioredoxin domain-con 92.8 5.8 0.00012 36.4 14.2 145 289-450 121-265 (304)
244 PF08631 SPO22: Meiosis protei 92.7 8.5 0.00019 35.8 23.8 158 238-397 86-271 (278)
245 PF10300 DUF3808: Protein of u 92.7 13 0.00027 37.7 18.4 158 204-364 191-374 (468)
246 PF07035 Mic1: Colon cancer-as 92.4 5.7 0.00012 33.4 12.8 135 119-265 13-149 (167)
247 COG3898 Uncharacterized membra 92.0 12 0.00026 35.9 25.1 267 173-452 85-394 (531)
248 COG5107 RNA14 Pre-mRNA 3'-end 92.0 7.5 0.00016 37.8 14.4 146 236-385 397-548 (660)
249 PF07079 DUF1347: Protein of u 92.0 13 0.00028 36.3 24.0 339 39-409 138-530 (549)
250 COG5107 RNA14 Pre-mRNA 3'-end 92.0 13 0.00028 36.3 18.7 124 271-398 397-528 (660)
251 KOG2610 Uncharacterized conser 91.9 2.2 4.8E-05 39.6 10.5 161 283-456 115-282 (491)
252 PF13176 TPR_7: Tetratricopept 91.8 0.35 7.6E-06 28.8 3.8 26 423-448 1-26 (36)
253 COG3629 DnrI DNA-binding trans 91.8 1.9 4.1E-05 39.6 10.1 75 303-378 154-233 (280)
254 PF07035 Mic1: Colon cancer-as 91.0 8.5 0.00018 32.4 13.1 133 221-365 14-148 (167)
255 KOG4555 TPR repeat-containing 91.0 4.3 9.4E-05 32.2 9.8 88 179-266 52-145 (175)
256 PF10300 DUF3808: Protein of u 90.7 20 0.00044 36.2 22.9 146 115-263 203-374 (468)
257 COG4105 ComL DNA uptake lipopr 90.3 13 0.00029 33.4 15.4 67 181-247 45-117 (254)
258 TIGR02508 type_III_yscG type I 90.2 6.3 0.00014 29.6 9.5 88 150-241 20-107 (115)
259 COG3629 DnrI DNA-binding trans 90.1 3.9 8.4E-05 37.6 10.4 76 271-346 153-236 (280)
260 COG1729 Uncharacterized protei 89.9 4.1 8.9E-05 36.9 10.3 91 305-398 145-241 (262)
261 PF13428 TPR_14: Tetratricopep 89.9 0.65 1.4E-05 29.1 3.9 33 422-456 2-34 (44)
262 COG3118 Thioredoxin domain-con 89.3 18 0.00038 33.4 16.0 51 146-197 145-195 (304)
263 KOG0550 Molecular chaperone (D 89.1 23 0.00049 34.3 17.8 167 63-231 166-351 (486)
264 PF13929 mRNA_stabil: mRNA sta 89.1 5.7 0.00012 36.4 10.6 64 131-194 198-262 (292)
265 KOG1941 Acetylcholine receptor 89.0 15 0.00033 34.8 13.2 124 275-398 126-272 (518)
266 KOG2114 Vacuolar assembly/sort 88.6 14 0.00031 38.9 14.0 149 140-297 339-489 (933)
267 KOG2610 Uncharacterized conser 88.3 23 0.00049 33.3 16.1 149 247-397 114-272 (491)
268 PF13176 TPR_7: Tetratricopept 88.1 1.3 2.8E-05 26.3 4.1 24 204-227 2-25 (36)
269 PF10602 RPN7: 26S proteasome 88.1 8.1 0.00018 33.1 10.6 97 303-399 37-140 (177)
270 PF10602 RPN7: 26S proteasome 87.9 7.3 0.00016 33.4 10.2 61 203-263 38-100 (177)
271 KOG2041 WD40 repeat protein [G 87.5 39 0.00084 35.1 28.1 67 132-200 689-764 (1189)
272 COG4649 Uncharacterized protei 87.4 10 0.00023 31.8 10.1 14 214-227 107-120 (221)
273 KOG4570 Uncharacterized conser 87.2 6.6 0.00014 36.3 9.7 101 265-366 58-164 (418)
274 PF00637 Clathrin: Region in C 86.7 0.77 1.7E-05 37.7 3.5 84 207-297 13-96 (143)
275 KOG4570 Uncharacterized conser 86.7 5.9 0.00013 36.6 9.1 103 163-266 57-165 (418)
276 PF04184 ST7: ST7 protein; In 86.5 37 0.00081 33.9 20.4 228 208-449 175-430 (539)
277 cd00923 Cyt_c_Oxidase_Va Cytoc 86.3 8.7 0.00019 28.7 8.2 63 115-178 22-84 (103)
278 PF00637 Clathrin: Region in C 86.3 0.57 1.2E-05 38.5 2.5 85 140-227 12-96 (143)
279 PF02284 COX5A: Cytochrome c o 86.2 6.1 0.00013 29.8 7.4 63 115-178 25-87 (108)
280 PF07721 TPR_4: Tetratricopept 85.8 1.1 2.5E-05 24.2 2.8 25 422-446 2-26 (26)
281 PF13762 MNE1: Mitochondrial s 85.3 16 0.00034 29.9 10.1 81 173-253 42-132 (145)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 85.3 7.9 0.00017 28.9 7.5 62 317-380 22-84 (103)
283 PF02284 COX5A: Cytochrome c o 85.1 8.8 0.00019 29.0 7.8 61 318-380 26-87 (108)
284 PF11207 DUF2989: Protein of u 85.0 8.2 0.00018 33.4 8.8 74 116-190 122-198 (203)
285 PF07719 TPR_2: Tetratricopept 84.9 1.8 4E-05 24.8 3.6 29 422-450 2-30 (34)
286 PF09477 Type_III_YscG: Bacter 84.7 16 0.00034 28.0 9.6 87 149-239 20-106 (116)
287 KOG1941 Acetylcholine receptor 84.6 22 0.00047 33.8 11.8 193 172-364 45-273 (518)
288 PF00515 TPR_1: Tetratricopept 84.4 2 4.3E-05 24.8 3.6 29 422-450 2-30 (34)
289 PF14669 Asp_Glu_race_2: Putat 84.0 26 0.00057 30.0 12.4 55 241-295 137-205 (233)
290 KOG4555 TPR repeat-containing 83.8 20 0.00044 28.6 9.7 52 312-364 53-104 (175)
291 PF13374 TPR_10: Tetratricopep 83.0 2.4 5.3E-05 25.7 3.8 28 422-449 3-30 (42)
292 PF13512 TPR_18: Tetratricopep 82.6 25 0.00054 28.7 11.5 49 283-331 22-76 (142)
293 PHA02875 ankyrin repeat protei 81.6 57 0.0012 32.3 15.0 200 121-337 16-230 (413)
294 PF13431 TPR_17: Tetratricopep 81.3 2.9 6.3E-05 24.4 3.4 24 167-190 10-33 (34)
295 PF13512 TPR_18: Tetratricopep 80.6 30 0.00065 28.2 10.0 24 206-229 52-75 (142)
296 PF13174 TPR_6: Tetratricopept 80.5 2.5 5.5E-05 23.9 3.0 28 423-450 2-29 (33)
297 PRK13342 recombination factor 80.1 66 0.0014 32.0 16.2 118 115-250 152-279 (413)
298 COG0457 NrfG FOG: TPR repeat [ 79.6 40 0.00087 29.2 26.9 181 149-330 37-230 (291)
299 PF13181 TPR_8: Tetratricopept 79.6 4.4 9.5E-05 23.2 3.9 28 422-449 2-29 (34)
300 TIGR02561 HrpB1_HrpK type III 79.5 33 0.00072 28.2 11.3 50 249-300 23-73 (153)
301 TIGR02561 HrpB1_HrpK type III 79.4 34 0.00073 28.1 10.8 89 146-238 21-114 (153)
302 COG0457 NrfG FOG: TPR repeat [ 79.4 41 0.00088 29.1 26.6 213 183-398 36-262 (291)
303 PRK11906 transcriptional regul 79.0 72 0.0016 31.7 15.8 123 174-298 257-399 (458)
304 PRK09687 putative lyase; Provi 78.6 57 0.0012 30.4 27.2 229 134-382 36-277 (280)
305 PF02259 FAT: FAT domain; Int 78.2 66 0.0014 30.8 15.1 64 335-398 144-210 (352)
306 PRK11906 transcriptional regul 77.8 78 0.0017 31.5 14.9 109 114-226 318-432 (458)
307 PF13374 TPR_10: Tetratricopep 77.6 6.4 0.00014 23.7 4.4 27 303-329 3-29 (42)
308 PF09613 HrpB1_HrpK: Bacterial 77.4 41 0.00089 28.1 13.1 88 145-236 20-112 (160)
309 TIGR03504 FimV_Cterm FimV C-te 77.2 4.7 0.0001 25.2 3.5 26 426-451 4-29 (44)
310 PF10366 Vps39_1: Vacuolar sor 77.1 14 0.0003 28.6 7.0 66 376-450 3-68 (108)
311 KOG2066 Vacuolar assembly/sort 76.9 1.1E+02 0.0023 32.6 24.2 127 170-302 392-536 (846)
312 KOG1550 Extracellular protein 76.8 99 0.0021 32.2 20.6 175 116-297 228-423 (552)
313 PRK09687 putative lyase; Provi 75.8 69 0.0015 29.8 27.6 229 167-407 34-270 (280)
314 TIGR02508 type_III_yscG type I 75.6 32 0.0007 26.0 9.2 78 252-332 21-98 (115)
315 PF11207 DUF2989: Protein of u 75.6 29 0.00064 30.1 9.1 74 318-392 122-198 (203)
316 COG4105 ComL DNA uptake lipopr 74.8 66 0.0014 29.2 19.0 165 271-450 35-233 (254)
317 PF00515 TPR_1: Tetratricopept 74.6 9.8 0.00021 21.7 4.4 27 304-330 3-29 (34)
318 KOG1585 Protein required for f 74.6 65 0.0014 29.0 16.8 56 340-396 193-251 (308)
319 COG3947 Response regulator con 74.2 74 0.0016 29.5 14.2 68 374-456 281-353 (361)
320 KOG1258 mRNA processing protei 74.2 1.1E+02 0.0024 31.4 24.6 347 83-435 62-489 (577)
321 PF14561 TPR_20: Tetratricopep 72.8 8.8 0.00019 28.5 4.7 45 407-451 8-52 (90)
322 COG4455 ImpE Protein of avirul 71.8 29 0.00063 30.5 8.1 58 306-364 5-62 (273)
323 PF11663 Toxin_YhaV: Toxin wit 71.8 2.1 4.5E-05 34.1 1.2 33 111-145 106-138 (140)
324 PF04184 ST7: ST7 protein; In 70.7 1.2E+02 0.0026 30.4 17.5 59 240-298 263-322 (539)
325 PF09613 HrpB1_HrpK: Bacterial 70.4 63 0.0014 27.0 13.7 51 247-299 21-72 (160)
326 KOG1585 Protein required for f 69.9 85 0.0018 28.3 16.2 201 136-360 32-250 (308)
327 cd08819 CARD_MDA5_2 Caspase ac 69.7 36 0.00078 25.0 7.0 66 154-221 21-86 (88)
328 PF06552 TOM20_plant: Plant sp 69.6 23 0.0005 30.1 6.9 93 353-456 7-113 (186)
329 KOG4077 Cytochrome c oxidase, 68.0 54 0.0012 26.0 8.0 62 115-177 64-125 (149)
330 COG5159 RPN6 26S proteasome re 67.9 1E+02 0.0022 28.5 16.1 192 207-398 9-232 (421)
331 COG4785 NlpI Lipoprotein NlpI, 67.7 88 0.0019 27.7 16.9 164 270-451 98-267 (297)
332 PF07719 TPR_2: Tetratricopept 67.5 17 0.00038 20.5 4.4 26 305-330 4-29 (34)
333 PF13762 MNE1: Mitochondrial s 66.6 72 0.0016 26.2 11.4 46 339-384 81-127 (145)
334 PF07163 Pex26: Pex26 protein; 66.5 85 0.0018 28.9 10.2 86 309-396 90-182 (309)
335 COG3947 Response regulator con 66.4 1.1E+02 0.0024 28.4 15.3 42 116-159 149-190 (361)
336 COG4455 ImpE Protein of avirul 65.5 28 0.00062 30.6 6.8 52 243-295 8-59 (273)
337 PHA02875 ankyrin repeat protei 63.6 1.6E+02 0.0034 29.1 14.2 210 142-372 6-230 (413)
338 KOG4077 Cytochrome c oxidase, 63.2 67 0.0015 25.5 7.7 72 319-400 66-137 (149)
339 PF13181 TPR_8: Tetratricopept 63.1 23 0.0005 20.0 4.3 26 304-329 3-28 (34)
340 smart00028 TPR Tetratricopepti 62.7 12 0.00027 20.0 3.2 29 422-450 2-30 (34)
341 TIGR03504 FimV_Cterm FimV C-te 61.8 21 0.00046 22.3 4.1 23 308-330 5-27 (44)
342 PF14853 Fis1_TPR_C: Fis1 C-te 61.5 43 0.00094 21.9 6.7 26 425-450 5-30 (53)
343 PF07163 Pex26: Pex26 protein; 60.8 1E+02 0.0022 28.4 9.6 17 208-224 90-106 (309)
344 PF10366 Vps39_1: Vacuolar sor 60.7 73 0.0016 24.6 7.8 27 304-330 41-67 (108)
345 PRK13342 recombination factor 60.7 1.8E+02 0.0039 28.9 15.7 101 233-351 173-279 (413)
346 COG4649 Uncharacterized protei 60.4 1.1E+02 0.0023 26.1 16.6 135 303-452 60-198 (221)
347 cd08819 CARD_MDA5_2 Caspase ac 60.4 66 0.0014 23.7 7.4 38 283-321 48-85 (88)
348 KOG0276 Vesicle coat complex C 60.3 1.6E+02 0.0034 30.5 11.6 136 238-402 616-751 (794)
349 PRK15180 Vi polysaccharide bio 59.6 1.2E+02 0.0027 30.1 10.5 119 244-365 297-419 (831)
350 KOG1464 COP9 signalosome, subu 58.5 1.5E+02 0.0032 27.2 15.0 168 130-297 21-217 (440)
351 PF11848 DUF3368: Domain of un 58.4 46 0.00099 21.2 5.3 29 351-379 16-44 (48)
352 KOG0276 Vesicle coat complex C 58.3 1.3E+02 0.0028 31.0 10.7 21 172-192 616-636 (794)
353 KOG4567 GTPase-activating prot 56.3 1.2E+02 0.0027 28.3 9.4 69 156-225 264-342 (370)
354 PF10345 Cohesin_load: Cohesin 56.2 2.7E+02 0.0058 29.4 17.8 190 199-398 28-251 (608)
355 PF09477 Type_III_YscG: Bacter 56.1 92 0.002 24.0 8.7 79 251-332 21-99 (116)
356 PRK14700 recombination factor 56.1 1.8E+02 0.0038 27.3 16.9 141 115-268 40-198 (300)
357 PF10255 Paf67: RNA polymerase 55.5 72 0.0016 31.4 8.5 68 374-448 124-191 (404)
358 PF04762 IKI3: IKI3 family; I 55.0 3E+02 0.0064 30.9 14.1 29 272-300 813-843 (928)
359 KOG4234 TPR repeat-containing 54.9 1.3E+02 0.0028 26.3 8.8 88 347-450 105-197 (271)
360 KOG2066 Vacuolar assembly/sort 54.7 3E+02 0.0065 29.5 25.2 23 206-228 510-532 (846)
361 KOG1464 COP9 signalosome, subu 54.6 1.7E+02 0.0038 26.7 16.2 58 307-364 150-218 (440)
362 COG5159 RPN6 26S proteasome re 54.0 1.8E+02 0.004 26.9 11.3 133 308-449 9-153 (421)
363 PRK15180 Vi polysaccharide bio 53.5 1.5E+02 0.0033 29.5 10.1 123 308-452 295-422 (831)
364 PF04190 DUF410: Protein of un 52.4 1.9E+02 0.0041 26.6 18.8 158 182-365 2-169 (260)
365 PF08967 DUF1884: Domain of un 52.2 18 0.00039 25.9 2.8 25 479-503 6-30 (85)
366 PRK10564 maltose regulon perip 51.8 31 0.00068 32.0 5.1 40 303-342 258-297 (303)
367 KOG0991 Replication factor C, 51.4 1.8E+02 0.004 26.1 9.8 52 293-346 230-281 (333)
368 PF10579 Rapsyn_N: Rapsyn N-te 51.3 55 0.0012 23.6 5.1 46 349-394 18-65 (80)
369 PHA03100 ankyrin repeat protei 51.2 2.8E+02 0.006 28.1 13.0 198 121-336 49-277 (480)
370 PF11848 DUF3368: Domain of un 50.4 64 0.0014 20.5 5.2 30 249-278 15-44 (48)
371 KOG4234 TPR repeat-containing 50.2 1.5E+02 0.0032 26.0 8.4 16 180-195 105-120 (271)
372 PRK10564 maltose regulon perip 49.5 36 0.00078 31.6 5.1 43 199-241 254-297 (303)
373 PF06252 DUF1018: Protein of u 49.4 1.2E+02 0.0025 23.9 7.5 68 436-514 23-90 (119)
374 PRK11619 lytic murein transgly 49.3 3.5E+02 0.0077 28.8 30.8 304 115-447 48-372 (644)
375 PF11846 DUF3366: Domain of un 49.2 61 0.0013 28.1 6.5 51 147-197 120-171 (193)
376 COG0735 Fur Fe2+/Zn2+ uptake r 48.6 1.2E+02 0.0027 24.8 7.8 65 121-186 7-71 (145)
377 PF11663 Toxin_YhaV: Toxin wit 48.5 20 0.00043 28.7 2.9 32 314-347 107-138 (140)
378 PF14432 DYW_deaminase: DYW fa 48.3 20 0.00044 28.1 3.0 35 457-503 2-36 (116)
379 PF07575 Nucleopor_Nup85: Nup8 48.3 1.9E+02 0.004 30.3 10.9 40 432-473 506-545 (566)
380 KOG4521 Nuclear pore complex, 47.9 4E+02 0.0088 30.1 12.9 163 279-446 928-1127(1480)
381 PRK11619 lytic murein transgly 47.2 3.8E+02 0.0083 28.5 23.1 304 40-364 44-373 (644)
382 PF14689 SPOB_a: Sensor_kinase 47.1 36 0.00079 23.1 3.7 26 424-449 26-51 (62)
383 COG5108 RPO41 Mitochondrial DN 46.8 1.6E+02 0.0034 30.8 9.3 24 307-330 33-56 (1117)
384 COG2976 Uncharacterized protei 46.2 2E+02 0.0044 25.0 14.6 126 305-451 57-189 (207)
385 PF13929 mRNA_stabil: mRNA sta 45.8 2.5E+02 0.0055 26.1 22.4 113 286-398 143-264 (292)
386 COG0735 Fur Fe2+/Zn2+ uptake r 45.5 1.5E+02 0.0033 24.3 7.9 63 222-285 7-69 (145)
387 PF10579 Rapsyn_N: Rapsyn N-te 45.4 62 0.0014 23.3 4.7 46 314-359 18-65 (80)
388 KOG4642 Chaperone-dependent E3 45.0 30 0.00065 30.9 3.7 88 347-451 20-108 (284)
389 COG2976 Uncharacterized protei 43.8 2.2E+02 0.0048 24.8 15.2 88 245-332 98-189 (207)
390 PRK14956 DNA polymerase III su 42.8 1.8E+02 0.0038 29.5 9.2 43 321-365 185-228 (484)
391 COG1747 Uncharacterized N-term 42.8 3.8E+02 0.0083 27.3 20.7 60 169-229 65-126 (711)
392 PRK10941 hypothetical protein; 42.4 2.8E+02 0.0061 25.6 10.5 63 374-451 183-245 (269)
393 PF14689 SPOB_a: Sensor_kinase 42.3 59 0.0013 22.1 4.2 29 235-263 22-50 (62)
394 PRK14963 DNA polymerase III su 42.0 2E+02 0.0043 29.5 9.6 28 427-455 248-275 (504)
395 KOG4648 Uncharacterized conser 42.0 66 0.0014 30.4 5.6 87 177-264 104-193 (536)
396 COG2909 MalT ATP-dependent tra 41.7 5E+02 0.011 28.4 24.2 198 247-460 426-657 (894)
397 KOG1586 Protein required for f 41.5 2.7E+02 0.0058 25.1 18.6 19 314-332 166-184 (288)
398 KOG4648 Uncharacterized conser 41.4 86 0.0019 29.7 6.2 81 142-227 104-184 (536)
399 PF04034 DUF367: Domain of unk 41.0 1.9E+02 0.004 23.1 7.8 61 371-447 65-125 (127)
400 KOG4507 Uncharacterized conser 40.0 89 0.0019 32.0 6.5 125 186-311 589-719 (886)
401 PF11846 DUF3366: Domain of un 39.9 1.3E+02 0.0028 26.0 7.1 31 368-398 140-170 (193)
402 cd00280 TRFH Telomeric Repeat 39.9 2.2E+02 0.0047 24.6 7.8 21 345-365 119-139 (200)
403 cd00280 TRFH Telomeric Repeat 39.4 2.5E+02 0.0054 24.2 8.2 49 115-163 84-139 (200)
404 PF03745 DUF309: Domain of unk 38.8 1.1E+02 0.0025 20.8 5.1 48 312-359 9-61 (62)
405 KOG0686 COP9 signalosome, subu 37.3 4.1E+02 0.009 26.1 15.2 91 203-295 152-253 (466)
406 cd08326 CARD_CASP9 Caspase act 37.1 1.7E+02 0.0036 21.5 6.3 62 155-220 19-80 (84)
407 PF09454 Vps23_core: Vps23 cor 36.4 1.1E+02 0.0023 21.2 4.7 49 199-248 6-54 (65)
408 PF09454 Vps23_core: Vps23 cor 35.6 94 0.002 21.4 4.3 49 335-384 6-54 (65)
409 PRK11639 zinc uptake transcrip 35.1 2.7E+02 0.0059 23.6 8.1 61 125-186 16-76 (169)
410 KOG0686 COP9 signalosome, subu 35.1 4.5E+02 0.0097 25.9 12.8 56 274-329 153-214 (466)
411 PF09670 Cas_Cas02710: CRISPR- 35.0 4.5E+02 0.0097 25.8 12.9 53 312-365 141-197 (379)
412 COG2256 MGS1 ATPase related to 34.4 4.6E+02 0.01 25.8 17.8 120 115-250 164-298 (436)
413 KOG3807 Predicted membrane pro 34.3 3.9E+02 0.0085 25.4 9.2 53 242-294 281-334 (556)
414 COG1725 Predicted transcriptio 34.3 1.9E+02 0.004 23.1 6.3 72 436-515 48-123 (125)
415 COG5187 RPN7 26S proteasome re 34.2 3.9E+02 0.0085 24.9 9.5 36 337-372 115-154 (412)
416 KOG1586 Protein required for f 34.1 3.6E+02 0.0077 24.4 13.8 21 432-452 165-185 (288)
417 KOG0890 Protein kinase of the 33.7 1E+03 0.022 29.6 23.8 115 143-263 1391-1510(2382)
418 KOG2396 HAT (Half-A-TPR) repea 33.3 5.3E+02 0.012 26.2 22.4 97 292-391 449-549 (568)
419 PF12926 MOZART2: Mitotic-spin 33.3 2E+02 0.0043 21.2 6.9 41 121-161 29-69 (88)
420 smart00804 TAP_C C-terminal do 32.8 43 0.00093 22.9 2.3 22 115-136 40-62 (63)
421 PRK09462 fur ferric uptake reg 32.5 2.8E+02 0.0061 22.7 8.1 62 124-186 6-68 (148)
422 COG1747 Uncharacterized N-term 32.2 5.6E+02 0.012 26.1 19.6 161 133-299 64-233 (711)
423 KOG0991 Replication factor C, 32.1 3.9E+02 0.0084 24.2 10.1 97 146-246 170-282 (333)
424 PRK08691 DNA polymerase III su 31.8 3.8E+02 0.0082 28.7 9.8 28 427-455 252-279 (709)
425 KOG2063 Vacuolar assembly/sort 31.7 7.5E+02 0.016 27.4 14.2 168 273-449 506-712 (877)
426 TIGR01558 sm_term_P27 phage te 31.6 2.4E+02 0.0052 22.0 6.7 33 476-508 68-100 (116)
427 PF12926 MOZART2: Mitotic-spin 30.5 2.2E+02 0.0048 20.9 7.7 42 257-298 29-70 (88)
428 KOG3807 Predicted membrane pro 30.4 2E+02 0.0043 27.2 6.7 106 249-367 229-341 (556)
429 PF11838 ERAP1_C: ERAP1-like C 30.3 4.7E+02 0.01 24.6 18.6 79 253-331 147-230 (324)
430 KOG1498 26S proteasome regulat 29.7 5.4E+02 0.012 25.2 18.9 118 343-472 137-263 (439)
431 KOG0687 26S proteasome regulat 29.6 5E+02 0.011 24.7 11.5 74 301-376 69-147 (393)
432 PF06552 TOM20_plant: Plant sp 29.6 2.4E+02 0.0053 24.2 6.6 42 217-266 96-137 (186)
433 KOG2581 26S proteasome regulat 29.3 5.7E+02 0.012 25.2 12.1 126 314-450 138-276 (493)
434 cd08326 CARD_CASP9 Caspase act 29.1 2.3E+02 0.005 20.7 7.0 38 284-321 43-80 (84)
435 PRK13341 recombination factor 28.8 7.8E+02 0.017 26.7 16.3 156 115-284 169-346 (725)
436 PRK06645 DNA polymerase III su 28.7 5.7E+02 0.012 26.3 10.4 21 435-455 271-291 (507)
437 cd07153 Fur_like Ferric uptake 28.4 1.4E+02 0.0029 23.2 4.9 37 351-387 14-50 (116)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 28.4 3.1E+02 0.0066 21.9 8.6 43 320-362 81-124 (126)
439 PRK07452 DNA polymerase III su 28.3 3.9E+02 0.0085 25.3 9.0 27 427-454 206-232 (326)
440 PRK09462 fur ferric uptake reg 27.8 3.3E+02 0.0071 22.3 7.3 62 326-388 6-68 (148)
441 KOG4279 Serine/threonine prote 27.1 4.8E+02 0.01 28.0 9.3 117 255-373 182-321 (1226)
442 PRK11639 zinc uptake transcrip 27.0 2.8E+02 0.0062 23.4 6.9 61 328-389 17-77 (169)
443 PF11817 Foie-gras_1: Foie gra 26.9 3.8E+02 0.0082 24.3 8.2 51 207-257 184-239 (247)
444 PF02847 MA3: MA3 domain; Int 26.9 1.5E+02 0.0032 22.8 4.8 21 308-328 8-28 (113)
445 COG5108 RPO41 Mitochondrial DN 26.8 3.9E+02 0.0086 28.1 8.6 88 140-227 33-129 (1117)
446 PF07575 Nucleopor_Nup85: Nup8 26.5 1.3E+02 0.0028 31.4 5.7 75 222-298 391-465 (566)
447 PF11817 Foie-gras_1: Foie gra 26.4 4.2E+02 0.009 24.0 8.4 52 308-359 184-240 (247)
448 PF02847 MA3: MA3 domain; Int 26.4 3E+02 0.0064 21.1 7.5 59 275-333 6-68 (113)
449 PF04781 DUF627: Protein of un 26.3 2E+02 0.0044 22.3 5.2 93 345-446 4-103 (111)
450 PF09986 DUF2225: Uncharacteri 26.2 4.6E+02 0.01 23.2 9.3 98 347-452 87-196 (214)
451 PF04097 Nic96: Nup93/Nic96; 26.2 8E+02 0.017 26.0 17.2 272 175-449 116-455 (613)
452 KOG1550 Extracellular protein 26.2 7.6E+02 0.016 25.7 22.1 148 114-267 263-428 (552)
453 PF07720 TPR_3: Tetratricopept 26.1 1.1E+02 0.0024 18.1 3.0 22 424-445 4-25 (36)
454 smart00544 MA3 Domain in DAP-5 26.1 3E+02 0.0066 21.1 11.4 24 376-399 6-29 (113)
455 PF12796 Ank_2: Ankyrin repeat 26.0 1.7E+02 0.0036 21.1 4.8 16 179-194 32-47 (89)
456 PF03745 DUF309: Domain of unk 25.4 2.2E+02 0.0049 19.3 5.3 48 211-258 9-61 (62)
457 KOG1114 Tripeptidyl peptidase 25.3 9.8E+02 0.021 26.7 13.6 70 318-387 1212-1282(1304)
458 COG1466 HolA DNA polymerase II 25.2 5.3E+02 0.011 24.7 9.2 92 360-456 150-243 (334)
459 TIGR03581 EF_0839 conserved hy 25.2 1.6E+02 0.0035 25.9 4.9 85 113-197 134-235 (236)
460 PRK14958 DNA polymerase III su 24.7 6.3E+02 0.014 26.0 10.0 103 347-454 175-278 (509)
461 KOG3636 Uncharacterized conser 24.7 7E+02 0.015 24.8 9.4 70 329-399 175-252 (669)
462 PF05119 Terminase_4: Phage te 24.3 3.1E+02 0.0066 20.5 7.5 36 473-508 56-91 (100)
463 PF10475 DUF2450: Protein of u 24.2 4.4E+02 0.0096 24.6 8.3 24 334-357 194-217 (291)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 24.2 3.7E+02 0.008 21.4 9.5 42 254-295 81-123 (126)
465 PF09868 DUF2095: Uncharacteri 24.2 3.1E+02 0.0067 21.4 5.6 37 343-380 67-103 (128)
466 TIGR03581 EF_0839 conserved hy 23.9 2.6E+02 0.0057 24.7 5.9 82 217-298 137-235 (236)
467 PRK14956 DNA polymerase III su 23.9 7.8E+02 0.017 25.1 12.4 101 116-236 182-283 (484)
468 cd07153 Fur_like Ferric uptake 23.9 1.9E+02 0.0042 22.3 5.0 45 207-251 6-50 (116)
469 PF14044 NETI: NETI protein 23.8 49 0.0011 21.9 1.2 30 486-515 9-39 (57)
470 PHA03100 ankyrin repeat protei 23.8 7.6E+02 0.016 24.8 14.4 215 140-371 37-277 (480)
471 PF08312 cwf21: cwf21 domain; 23.7 57 0.0012 20.7 1.5 33 479-511 5-37 (46)
472 PRK07914 hypothetical protein; 23.6 5.2E+02 0.011 24.5 8.8 24 432-455 206-229 (320)
473 KOG2063 Vacuolar assembly/sort 23.6 1E+03 0.022 26.4 17.0 113 172-284 506-639 (877)
474 PF10475 DUF2450: Protein of u 22.8 5.9E+02 0.013 23.8 8.9 111 278-395 105-220 (291)
475 PF15297 CKAP2_C: Cytoskeleton 22.7 3.6E+02 0.0077 25.9 7.0 65 388-454 106-173 (353)
476 KOG2659 LisH motif-containing 22.7 5.6E+02 0.012 22.9 9.0 97 198-296 23-128 (228)
477 KOG1498 26S proteasome regulat 22.5 7.4E+02 0.016 24.3 12.9 188 148-365 25-240 (439)
478 PF12862 Apc5: Anaphase-promot 22.4 3.3E+02 0.0071 20.1 6.5 54 211-264 8-69 (94)
479 PF01475 FUR: Ferric uptake re 22.3 1.4E+02 0.003 23.4 3.9 37 350-386 20-56 (120)
480 PF11838 ERAP1_C: ERAP1-like C 22.2 6.6E+02 0.014 23.6 12.3 60 171-230 170-230 (324)
481 PF04090 RNA_pol_I_TF: RNA pol 21.7 5.5E+02 0.012 22.5 8.4 29 303-331 42-70 (199)
482 PF09670 Cas_Cas02710: CRISPR- 21.3 7.9E+02 0.017 24.1 12.5 55 210-265 140-198 (379)
483 PF07678 A2M_comp: A-macroglob 21.2 3.4E+02 0.0073 24.6 6.7 80 186-265 115-221 (246)
484 PF01475 FUR: Ferric uptake re 21.2 1.7E+02 0.0036 22.9 4.2 42 207-248 13-54 (120)
485 PHA02878 ankyrin repeat protei 21.2 8.6E+02 0.019 24.5 14.5 16 438-453 358-373 (477)
486 PF10255 Paf67: RNA polymerase 21.1 2.5E+02 0.0055 27.7 6.0 57 172-228 124-191 (404)
487 PRK07764 DNA polymerase III su 20.9 7.6E+02 0.016 27.3 10.1 77 318-398 181-258 (824)
488 PRK02287 hypothetical protein; 20.7 5.3E+02 0.011 21.9 8.2 62 372-449 107-168 (171)
489 PF04090 RNA_pol_I_TF: RNA pol 20.6 5.3E+02 0.012 22.6 7.2 36 135-171 41-76 (199)
490 COG2405 Predicted nucleic acid 20.2 2.2E+02 0.0047 23.2 4.3 41 140-180 114-154 (157)
491 PLN03192 Voltage-dependent pot 20.0 1E+03 0.022 26.3 11.2 14 383-396 663-676 (823)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-67 Score=551.91 Aligned_cols=471 Identities=30% Similarity=0.534 Sum_probs=434.5
Q ss_pred cccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCC
Q 044422 20 SLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTF 99 (519)
Q Consensus 20 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (519)
+..||+.++++++ +.++++.|.+++..|. ..+..|+..+++.++..+.+. +....+..+|+.+..++...
T Consensus 122 ~~~t~~~ll~a~~--------~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~~~~~~t 191 (697)
T PLN03081 122 PASTYDALVEACI--------ALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKC-GMLIDARRLFDEMPERNLAS 191 (697)
T ss_pred CHHHHHHHHHHHH--------hCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcC-CCHHHHHHHHhcCCCCCeee
Confidence 4455666666655 5666666677766665 356667777777777777665 45667888999998766555
Q ss_pred chhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHH
Q 044422 100 GSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITL 179 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (519)
+ +.+...+...+ ++++|+++|++|.+.|+.||..||+.++.+|+..|+...+.+++..+.+.|+.||..+||+||++
T Consensus 192 ~-n~li~~~~~~g--~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~ 268 (697)
T PLN03081 192 W-GTIIGGLVDAG--NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268 (697)
T ss_pred H-HHHHHHHHHCc--CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHH
Confidence 4 55666666654 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHH
Q 044422 180 YSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAH 259 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 259 (519)
|++.|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 269 y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 260 CQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 339 (519)
..|.+.|+.|+..+|++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T 428 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH--------
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAA-------- 410 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~-------- 410 (519)
|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|+..|+..+|+.+
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999985 799999999999999999999999999999999999999999654
Q ss_pred ---------HHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChh
Q 044422 411 ---------ESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLS 481 (519)
Q Consensus 411 ---------~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (519)
++.+++.|.+..+|..|+.+|++.|++++|.++++.|++.|+.+.++.+|+.+.+.+|.|..++..|+...
T Consensus 509 ~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~ 588 (697)
T PLN03081 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588 (697)
T ss_pred CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHH
Confidence 44557889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCc
Q 044422 482 EILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 482 ~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
+++..++++..+|++.||.||.
T Consensus 589 ~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 589 EIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-65 Score=550.10 Aligned_cols=471 Identities=32% Similarity=0.571 Sum_probs=434.1
Q ss_pred hcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHH--------------------------------
Q 044422 19 QSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTE-------------------------------- 66 (519)
Q Consensus 19 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------------- 66 (519)
++..+||++|.+++ +.|++++|+++|+.|.. .+..|+..
T Consensus 251 ~d~~s~n~li~~~~--------~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 251 RDCISWNAMISGYF--------ENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred CCcchhHHHHHHHH--------hCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 45677888888888 78888888888887763 44455544
Q ss_pred ---HHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 044422 67 ---VHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVT 143 (519)
Q Consensus 67 ---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 143 (519)
+|+.++..+++. +....+.++|+.+..++...| +.+...+...+ ++++|+++|++|.+.|+.||..||+.++.
T Consensus 322 d~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~~d~~s~-n~li~~~~~~g--~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSL-GSWGEAEKVFSRMETKDAVSW-TAMISGYEKNG--LPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhc-CCHHHHHHHHhhCCCCCeeeH-HHHHHHHHhCC--CHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 455555555444 345678888999887765554 45556666655 89999999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 044422 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL 223 (519)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 223 (519)
+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|.++|..+||++|.+|++.|+.++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 044422 224 YRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIV 303 (519)
Q Consensus 224 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 303 (519)
|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++||++|+++|++++|.++|+.+ .+|..
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~ 555 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV 555 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh
Confidence 999976 6899999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~ 382 (519)
+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++.+|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHH-----------------HHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEA-----------------AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~-----------------~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
++.|++++|.+++++|+++||..+|++ .+++++++|.++..|..|.+.|+..|+|++|.++.+
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999999999999999944 346678999999999999999999999999999999
Q ss_pred HHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCcc
Q 044422 446 LMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504 (519)
Q Consensus 446 ~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~ 504 (519)
.|++.|++++++.||+.+.+.+|.|..++..||+..+++..++++..+|++.||.||..
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999963
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-57 Score=481.99 Aligned_cols=453 Identities=14% Similarity=0.222 Sum_probs=397.3
Q ss_pred hcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCC
Q 044422 19 QSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNST 98 (519)
Q Consensus 19 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (519)
+....|..++..+| +.|++++|+++|+.|....-..++...++.++..+... +....+..++..+..++.
T Consensus 368 ~~~~~~~~~y~~l~--------r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~pd~- 437 (1060)
T PLN03218 368 RKSPEYIDAYNRLL--------RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRNPTL- 437 (1060)
T ss_pred CCchHHHHHHHHHH--------HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCCCCH-
Confidence 34556667777777 89999999999999986555667777888888887665 456677888888887333
Q ss_pred CchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
...+.++..+...+ +++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.
T Consensus 438 ~Tyn~LL~a~~k~g--~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 438 STFNMLMSVCASSQ--DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33345556565554 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHccCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCc
Q 044422 179 LYSKCRVIIDAYKVFEEMP----VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN--SMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999996 59999999999999999999999999999976 68999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 79999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHH
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM---PIYPNAV 405 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 405 (519)
.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++| ++.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 6889998
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCE-------------EEEEEe
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNV-------------VYRFRA 472 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~-------------~~~~~~ 472 (519)
+|+. |+.+|++.|++++|.+++++|.+.|+.|+..++...+.-. +..+.
T Consensus 756 Ty~s-----------------LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~- 817 (1060)
T PLN03218 756 TYSI-----------------LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD- 817 (1060)
T ss_pred HHHH-----------------HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-
Confidence 8877 5999999999999999999999999999985543322100 00010
Q ss_pred cCCcCcC-hhhHHHHHHHHHHHHHHcCCCCCc
Q 044422 473 EDKSNTR-LSEILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 473 ~~~~~~~-~~~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
..+.. ...-....-.++++|.+.|+.||.
T Consensus 818 --~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 818 --SGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred --ccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 00000 011123455688999999999996
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-57 Score=486.73 Aligned_cols=461 Identities=22% Similarity=0.355 Sum_probs=401.3
Q ss_pred hhhcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHH---------------------
Q 044422 17 ALQSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDF--------------------- 75 (519)
Q Consensus 17 ~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------- 75 (519)
...+..+++.+++++| +.|++++|..+|+.|.+ .+..++...|..++..+
T Consensus 47 ~~~~~~~~n~~i~~l~--------~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 117 (857)
T PLN03077 47 SSSSTHDSNSQLRALC--------SHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117 (857)
T ss_pred cccchhhHHHHHHHHH--------hCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC
Confidence 3445666788888888 89999999999999974 55556666665555444
Q ss_pred --------------hhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044422 76 --------------LQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTA 141 (519)
Q Consensus 76 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 141 (519)
.+. +....+..+|+.+..++...+ +.++..+...+ ++++|+++|++|.+.|+.||..||+.+
T Consensus 118 ~~~~~~~n~li~~~~~~-g~~~~A~~~f~~m~~~d~~~~-n~li~~~~~~g--~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRF-GELVHAWYVFGKMPERDLFSW-NVLVGGYAKAG--YFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred CCCchHHHHHHHHHHhC-CChHHHHHHHhcCCCCCeeEH-HHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 333 334567778888887655544 44555555554 899999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHH
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
+++|+..+++..+.+++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|+++|..+||++|.+|++.|++++|+
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD 301 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 301 (519)
++|.+|...|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.+||
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 381 (519)
..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhh----------------------------------------------
Q 044422 382 LGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL---------------------------------------------- 415 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~---------------------------------------------- 415 (519)
|+++|++++|.++|++|. .+|..+|+.+..++.
T Consensus 434 y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999999985 455555544332221
Q ss_pred ------------------------------------cCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeE
Q 044422 416 ------------------------------------LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCS 459 (519)
Q Consensus 416 ------------------------------------~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 459 (519)
..+.+..+|+.++.+|++.|+.++|.++|++|.+.|+.||..++
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 11456678999999999999999999999999999999999665
Q ss_pred EEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHH-HcCCCCCc
Q 044422 460 WIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK-TLGYVPEV 503 (519)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~-~~g~~p~~ 503 (519)
...+....+ ... .+...++++.|. +.|+.|+.
T Consensus 593 ~~ll~a~~~--------~g~----v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 593 ISLLCACSR--------SGM----VTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHhh--------cCh----HHHHHHHHHHHHHHhCCCCch
Confidence 543332221 112 344555778888 78999986
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-56 Score=470.17 Aligned_cols=348 Identities=18% Similarity=0.278 Sum_probs=229.7
Q ss_pred hcccccceeecccchhhhhhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCC
Q 044422 19 QSLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNST 98 (519)
Q Consensus 19 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (519)
++..||+.+++++| +.|++++|.++|+.|. ..+..|+..+|+.++.++++.+
T Consensus 435 pd~~Tyn~LL~a~~--------k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G------------------- 486 (1060)
T PLN03218 435 PTLSTFNMLMSVCA--------SSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSG------------------- 486 (1060)
T ss_pred CCHHHHHHHHHHHH--------hCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCc-------------------
Confidence 44455555555555 5555555555555554 2445555555555555555443
Q ss_pred CchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.
T Consensus 487 ----------------~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 487 ----------------KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred ----------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHccCC------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 044422 179 LYSKCRVIIDAYKVFEEMP------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 6666666666666666663 3566666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++|.++|+.|.+.|+.||..+|+++|++|++.|++++|.++|+.|.+ ||..+|+++|.+|++.|++++|.++|++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666653 56666666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHH
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM---PIYPNAV 405 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 405 (519)
.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.| ++.||..
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666 5666666
Q ss_pred HHHHH
Q 044422 406 IWEAA 410 (519)
Q Consensus 406 ~~~~~ 410 (519)
+|+.+
T Consensus 791 tynsL 795 (1060)
T PLN03218 791 MCRCI 795 (1060)
T ss_pred HHHHH
Confidence 66554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.4e-52 Score=436.42 Aligned_cols=338 Identities=28% Similarity=0.456 Sum_probs=317.2
Q ss_pred hhhhhhhcCCccCHHHHHHHHHHHhHCC-CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 044422 103 NVFDQLLDTPVVDVEKLISMHHDLHRER-LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYS 181 (519)
Q Consensus 103 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (519)
.++..+...+ ++++|+++|++|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.++++|+
T Consensus 92 ~~i~~l~~~g--~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 92 SQIEKLVACG--RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 3444444443 8999999999999865 789999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHH
Q 044422 182 KCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQ 261 (519)
Q Consensus 182 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 261 (519)
+.|+++.|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..
T Consensus 170 k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 170 KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 341 (519)
+.+.|+.||..+|++||++|+++|++++|.++|+.|.++|+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
.++.+|++.|+++.|.++++.|.+.|+.||..+|++|+.+|+++|++++|.++|++|. +||..+|+.
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~------------ 396 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA------------ 396 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH------------
Confidence 9999999999999999999999999999999999999999999999999999999996 577777766
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEE
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSW 460 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 460 (519)
|+.+|++.|+.++|.++|++|.+.|+.||..++.
T Consensus 397 -----lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 397 -----LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430 (697)
T ss_pred -----HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5777777777777777777777777777775543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=5.4e-21 Score=209.71 Aligned_cols=402 Identities=12% Similarity=0.077 Sum_probs=303.3
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|..+++.+... .+.+...+..+...+... +....+...+.......+................+++++|.
T Consensus 443 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 567777777777666532 223334455554444444 34444555555444333332222222222222334788888
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--- 197 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 197 (519)
+.|+.+.+.+ +.+..++..+...+.+.|+.++|..++..+.+.+ +.+...+..++..|.+.|++++|..+++.+.
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 8888887754 3467778888888888888888888888887764 4566677788888888888888888888875
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 044422 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (519)
+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3466788888889999999999999998887754 3456678888888888999999999998888764 5567888888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
...+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999988865 356678888888999999999999999988764 45567778888999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHH----------------HHHHHhhhc
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN-AVIW----------------EAAESRLLL 416 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~----------------~~~~~~~~~ 416 (519)
+|.+.++.+.+.. +.+...+..+...|...|++++|...|+++ ...|+ ...+ ..+++++.+
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 832 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Confidence 9999999988753 557788888999999999999999999987 23333 2222 456778889
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.|.++..+..++.++...|++++|.++++++.+.+.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999998764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.8e-21 Score=213.45 Aligned_cols=397 Identities=9% Similarity=-0.025 Sum_probs=318.2
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhh--hhhhhhcCCccCHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSN--VFDQLLDTPVVDVEK 118 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 118 (519)
..|++++|...|+...+..+ .....+..+...+... +....+...+.......+...... +...+.. .++.++
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 551 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQE-GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR--TGNEEE 551 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--cCCHHH
Confidence 88999999999998764322 2333444444444433 344455555555543333322211 2222222 448999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP- 197 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 197 (519)
|...|+++.+.+ +.+...+..+...+...|+++.|..+++.+.+.. +.+..+|..+..++.+.|++++|...|+.+.
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4467778889999999999999999999987754 6677899999999999999999999999875
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 198 --VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 198 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+.
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 3466788999999999999999999999998764 4467889999999999999999999999998876 66778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
.+...+.+.|++++|...|+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999998764 556778888999999999999999999998864 44778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HH-----------------HHHHHhh
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAV-IW-----------------EAAESRL 414 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~~~~~~ 414 (519)
++|...|+++.+.. +.+...++.+...+...|+ .+|...++++ ...|+.. .+ ..+++++
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999764 5578889999999999999 8899998876 3333321 11 5567888
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+..|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 865 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999863
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.2e-19 Score=179.14 Aligned_cols=293 Identities=11% Similarity=0.063 Sum_probs=239.1
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-CC------hhHHHHHHHHHHhcCC
Q 044422 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-RN------VVSWTAIIAAFAQEWQ 216 (519)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~------~~~~~~li~~~~~~~~ 216 (519)
.+...|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4457789999999999998864 44566888899999999999999999988763 21 2467888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY----IQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~ 292 (519)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998753 45677889999999999999999999999887653322 2345677888899999999999
Q ss_pred HHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 293 VFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 293 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.|+++.+ | +...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++++.+. .
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9998764 3 456788888999999999999999999987643333567888999999999999999999999885 4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc---cCCHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG---VRCWDQAARVRK 445 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~---~g~~~~A~~~~~ 445 (519)
|+...+..+...+.+.|++++|..+++++ ...|+...+.. ++..+.. .|+.++++.+++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~-----------------l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR-----------------LLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH-----------------HHHHhhhccCCccchhHHHHHH
Confidence 77777788999999999999999999875 44566665554 4555543 569999999999
Q ss_pred HHHHCCCCCCCe
Q 044422 446 LMKDKGLKTNPG 457 (519)
Q Consensus 446 ~m~~~g~~~~~~ 457 (519)
+|.+.++.|+|.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 999999999995
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=6.9e-18 Score=166.70 Aligned_cols=280 Identities=9% Similarity=0.106 Sum_probs=237.6
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN---VYVGSSLITLYSKCRVIIDA 189 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 189 (519)
.+++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ..++..+...|.+.|++++|
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 348999999999999864 34667888999999999999999999999987643222 35688999999999999999
Q ss_pred HHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 190 YKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND----FTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 190 ~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...++++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999974 56778999999999999999999999999886543322 24566778889999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KD--IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.+.. +.+...+..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|.+.|++++|...++++.+. .|+..
T Consensus 207 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~ 283 (389)
T PRK11788 207 LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGAD 283 (389)
T ss_pred HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCch
Confidence 8864 45567888899999999999999999999874 33 356788999999999999999999999886 46666
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR---AGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 398 (519)
.+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 7788999999999999999999999874 5899999988888775 55899999999877
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=3e-15 Score=155.58 Aligned_cols=277 Identities=11% Similarity=0.026 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
+++.|++.|+.+.+.. +.+...+..+...+.+.|+++.|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8899999999998763 3356677778888889999999999999888763 4456788888889999999999999888
Q ss_pred cCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMP--VR-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
.+. .| +...+..+ ..+...|++++|...++.+......++...+..+..++...|++++|...++.+.+.. +.+.
T Consensus 169 ~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 169 TQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 764 23 33334333 3478889999999999888776433445555566778888999999999999888765 5567
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEE----AVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~----a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
..+..+...|...|++++ |...|+...+ | +...+..+...+.+.|++++|...+++..+... -+...+..+.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La 325 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 788888999999999885 7888887764 3 556888888899999999999999998887532 2455666777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 345 SSCRHGGLVEEGKVYFDSMAKHGLKPELD-HYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.++...|++++|...++.+.+. .|+.. .+..+..++...|+.++|...|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888999999999999988874 35443 3344567788899999999988875
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=2.4e-15 Score=156.71 Aligned_cols=332 Identities=13% Similarity=0.042 Sum_probs=263.7
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
+++++|+..|++..+ +.|+...|..+..++...|+++.|...+...++.. +.+...|..+..+|...|++++|+..|
T Consensus 141 ~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 489999999999886 46788889999999999999999999999998764 446678899999999999999997655
Q ss_pred ccCC---------------------------------CCChhHHHHHHHH------------------------------
Q 044422 194 EEMP---------------------------------VRNVVSWTAIIAA------------------------------ 210 (519)
Q Consensus 194 ~~m~---------------------------------~~~~~~~~~li~~------------------------------ 210 (519)
.... ..+...+..+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 3321 0111111111000
Q ss_pred H------HhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 211 F------AQEWQVDMCLELYRMMRNSM-LEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 211 ~------~~~~~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
. ...+++++|.+.|++....+ ..| +...+..+...+...|++++|...++...+.. +.....|..+...+.
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNL 376 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH
Confidence 0 11257889999999988764 234 34577888888899999999999999998864 444678889999999
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 283 KCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
..|++++|...|+...+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999997754 357889999999999999999999999998764 23566777788889999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-------H------------------HHHHHHHh
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNA-------V------------------IWEAAESR 413 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~------------------~~~~~~~~ 413 (519)
+++..+.. +-+...++.+...+...|++++|.+.|++. .+.|+. . ....++++
T Consensus 456 ~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99998742 345778899999999999999999999885 333321 0 01346777
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.++|++..++..|+.++...|++++|++.|++..+..
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999987653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.2e-15 Score=156.60 Aligned_cols=316 Identities=9% Similarity=-0.017 Sum_probs=253.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+.+++........ +...+..++.++...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 57 ~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred CcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999886544 34445555567778999999999999998874 5567788999999999999999999999
Q ss_pred cCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+... .+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+..-.++.
T Consensus 135 ~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 135 QAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 9863 45678889999999999999999999988765422 23333333 4478899999999999998776533445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVR----AIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
..+..+..++.+.|++++|...++...+ .+...+..+...+...|++++ |...|++..+.. +.+...+..+.
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg 291 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYA 291 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 5566667889999999999999998765 356788889999999999986 899999998753 23567888899
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhH
Q 044422 345 SSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 424 (519)
..+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++.+ +..+|.+...+
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a---------------l~~~P~~~~~~ 355 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL---------------AREKGVTSKWN 355 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHhCccchHHH
Confidence 99999999999999999999753 334566777899999999999999998766 23344444444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 425 VQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 425 ~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..+..++...|++++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456788999999999999999987653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=2.1e-16 Score=150.36 Aligned_cols=340 Identities=13% Similarity=0.162 Sum_probs=278.5
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH-HHHHHHHHHh
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV-GSSLITLYSK 182 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~ 182 (519)
+-+.+..++ ++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|...++. .|+... .+.+....-.
T Consensus 122 ~aN~~kerg--~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 122 LANILKERG--QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHhc--hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh
Confidence 445555555 899999999999986432 6778999999999999999999999988875 565543 4455556666
Q ss_pred CCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHH
Q 044422 183 CRVIIDAYKVFEEMPV--RN-VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSA 258 (519)
Q Consensus 183 ~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 258 (519)
.|++++|...+.+..+ |. ..+|+.|...+-.+|+...|++.|++.... .|+ ...|-.|...|...+.++.|...
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 8999999988887653 43 468999999999999999999999998774 454 46888999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 044422 259 HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (519)
|....... +....++..+...|-..|.++.|++.|++..+ | -+.+||.|..++-..|+..+|.+.|.+..... +-
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 98887754 55678888899999999999999999998875 4 34789999999999999999999999988753 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH--------
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAV-------- 405 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-------- 405 (519)
-....+.|...+...|.++.|..+|....+. -|. ...++.|...|-.+|++++|..-|++. .++|+..
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 3556788889999999999999999998873 454 456788999999999999999999876 6777643
Q ss_pred HH----------HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 406 IW----------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 406 ~~----------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
+| ..+++++..+|.-..+++.|..+|-..|++.+|+.-++...+. +||.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 22 4568889999999999999999999999999999999987664 4554
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=2.7e-14 Score=158.59 Aligned_cols=252 Identities=11% Similarity=0.054 Sum_probs=151.7
Q ss_pred hccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHH
Q 044422 38 QISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117 (519)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (519)
.+...|++++|...|+......... ...............+....+...++.+....+......+.........++.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~--~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPE--LDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCC--hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 3457899999999999886433222 22222222332223344445666666666555544433333333223344778
Q ss_pred HHHHHHHHHhHCCC------------------C--------------CCHHHH---------------------HHHHHH
Q 044422 118 KLISMHHDLHRERL------------------K--------------VDASFL---------------------STAVTS 144 (519)
Q Consensus 118 ~A~~~~~~m~~~g~------------------~--------------p~~~~~---------------------~~ll~~ 144 (519)
+|+..|+++.+... . |+...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 88888877654210 0 000000 011233
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CCh---hHHH------------HH
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNV---VSWT------------AI 207 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~------------~l 207 (519)
+...|++++|...|+..++.. +.+..++..+..++.+.|++++|+..|++..+ |+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 556788889999998888763 44677888888899999999999998888753 321 1121 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 345678889999999998888764 3355667778888888999999999998888754 333444444444432 2233
Q ss_pred HHHHHHHH
Q 044422 288 EEAVYVFN 295 (519)
Q Consensus 288 ~~a~~~~~ 295 (519)
++|..+++
T Consensus 435 ~~A~~~l~ 442 (1157)
T PRK11447 435 EKALAFIA 442 (1157)
T ss_pred HHHHHHHH
Confidence 44444433
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=9.7e-16 Score=145.96 Aligned_cols=369 Identities=15% Similarity=0.137 Sum_probs=287.9
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++.+|+.++..+.+ ..+.....|..+-.++.+.+ +...+-..+..-.+.++......-.-+.+.+..+..++|.
T Consensus 128 erg~~~~al~~y~~aie--l~p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence 67999999999998864 22345566666666666554 4444555555555555544433333333334444888898
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCHHHHHHHHccCC--
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKVFEEMP-- 197 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 197 (519)
..+.+..+... --+..|+.|...+-..|+...|.+-|++.++. .|+ ...|-.|...|...+.++.|...+.+..
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88888877532 23456888888888999999999999988764 454 4578889999999999999999998765
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 198 -VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 198 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.....+|..+...|-.+|..+.|+..|++..+. .|+ ...|+.|..++-..|++.+|...|+...... +......+
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 345678888888999999999999999999875 454 5789999999999999999999999988874 55577889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISSCRHGG 351 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g 351 (519)
.|...|...|++++|..+|....+ | -...+|.|...|-++|++++|+..|++..+ +.|+ ...|+.+-..|-..|
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 999999999999999999998765 3 346789999999999999999999999876 5666 457888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 352 LVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
+++.|.+.+.+.... .|+ ...++.|...|-..|++.+|..-|+. +++++|+.+.+|..|+.+
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~---------------aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRT---------------ALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHH---------------HHccCCCCchhhhHHHHH
Confidence 999999999999874 454 46788899999999999999986654 467888888888888876
Q ss_pred HhccCCH
Q 044422 431 YAGVRCW 437 (519)
Q Consensus 431 ~~~~g~~ 437 (519)
+---.+|
T Consensus 500 lq~vcdw 506 (966)
T KOG4626|consen 500 LQIVCDW 506 (966)
T ss_pred HHHHhcc
Confidence 6444333
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=3.9e-14 Score=157.33 Aligned_cols=382 Identities=11% Similarity=0.035 Sum_probs=265.4
Q ss_pred cCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhh--------------hh
Q 044422 40 SSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSN--------------VF 105 (519)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 105 (519)
...|++++|...|+...... +.+...+..+-..+... +....+...+.......+...... +.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 36789999999998876322 22344555555555444 445556666555544333221100 00
Q ss_pred hhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 044422 106 DQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV 185 (519)
Q Consensus 106 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (519)
........+++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+.+++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 0111123348999999999998864 3456677778888899999999999999988764 445566777777764 567
Q ss_pred HHHHHHHHccCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch
Q 044422 186 IIDAYKVFEEMPVRN------------VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 186 ~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999888775321 2245566778888999999999999998764 224567778889999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHHcCChHH
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK----DI---------VSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~ 320 (519)
+|...++.+.+.. +.+...+..+...+.+.++.++|...++.+... +. ..+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999988754 445555555666677889999999999887642 11 112345667888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 044422 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI 400 (519)
Q Consensus 321 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 400 (519)
|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.++...
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll- 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP- 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh-
Confidence 9998872 24455667778888899999999999999998753 3467788889999999999999999888662
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+..|+++..+..+..++...|++++|.++++++...
T Consensus 665 --------------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 665 --------------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred --------------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 223344444444556666666666666666665543
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.9e-13 Score=123.14 Aligned_cols=388 Identities=13% Similarity=0.055 Sum_probs=270.1
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHh-hccccc--cchhhhc--ccCCCCCCCCchhhhhhhhhcCCccC
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFL-QTDSKH--LDSQKFN--HDFTGTNSTFGSSNVFDQLLDTPVVD 115 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (519)
+.|...++--+++.|. ..+...+..+...+++... ..++.. .+.+.+. +.+...++..| .+
T Consensus 127 S~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-------------K~ 192 (625)
T KOG4422|consen 127 SSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-------------KS 192 (625)
T ss_pred hhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-------------cc
Confidence 5899999999999998 4667777777777777643 222211 1222221 12222222222 12
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
-+-|.-+|+. .+-+..||.++|.+.|+-...+.|..++++-.....+.+..+||.+|.+-.-.-+ .+++.+
T Consensus 193 G~vAdL~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 193 GAVADLLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred ccHHHHHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 2223333332 2447889999999999999999999999998887778999999999987655544 445555
Q ss_pred CC----CCChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH-HHHHHHHHHH--
Q 044422 196 MP----VRNVVSWTAIIAAFAQEWQVDM----CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ-GRSAHCQTIR-- 264 (519)
Q Consensus 196 m~----~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~-- 264 (519)
|. .||..|+|+++++..+.|+++. |++++.+|++-|+.|...+|..+|..+++-++..+ +..++..+..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 53 7999999999999999998754 67788999999999999999999999999988855 3444444432
Q ss_pred --cCC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---hhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 265 --MGF----FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK--------D---IVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 265 --~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
..+ +.|...|...|+.|.+..+.+-|.++..-.... + ..-|..+....|+....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 235667888899999999999999887766531 2 23466788888999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC-CH--H-H--HHHHHHhCCCC
Q 044422 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG-LL--E-E--ARDFIKQMPIY 401 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--~-~--A~~~~~~~~~~ 401 (519)
|.-.-.-|+..+...++++....|.++-..++|..++..|..-....-.-++..+++.. +. . . --..+.+. -
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~--a 501 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC--A 501 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH--H
Confidence 99888889999999999999999999999999999999886666665555666666544 11 1 0 00011111 0
Q ss_pred CCHHH-HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 044422 402 PNAVI-WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 402 p~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~ 453 (519)
.|... +..-.+......-.+...+..+-.+.+.|++++|.+++....+.|-+
T Consensus 502 ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 00000 00000111111122345566778889999999999999999766643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=3.2e-13 Score=143.57 Aligned_cols=390 Identities=9% Similarity=-0.005 Sum_probs=255.0
Q ss_pred hccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHH
Q 044422 38 QISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVE 117 (519)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (519)
..+..|+.++|++++..... ..+.....+..+-..+... +....+..++.......+................++.+
T Consensus 24 ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34478999999999988763 2233344455555555444 44455666666654444433322222222222334788
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 118 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
+|+..+++..+.. +.+.. +..+..++...|+.+.|...++.+.+.. +-+...+..+..++...|..+.|+..++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 8888888887652 33455 7777777778888888888888887764 3355566667777777888888888887766
Q ss_pred C-CCh------hHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCCchHHH
Q 044422 198 V-RNV------VSWTAIIAAFAQ-----EWQV---DMCLELYRMMRNS-MLEPNDF-TFT----SILSACTGSGALGQGR 256 (519)
Q Consensus 198 ~-~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~ 256 (519)
. |+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|+.++|.
T Consensus 178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4 211 012222222221 1223 6677777777653 2223221 111 1134455668888888
Q ss_pred HHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 257 SAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD-------IVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 257 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
..|+.+.+.+-+ |+. ....+..+|...|++++|+..|+.+.+.+ ...+..+..++...|++++|..+++.+
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888888876522 221 22224668888888999988888775422 234555666778888899998888888
Q ss_pred HHCCC-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 044422 329 MKQRV-----------KPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF 394 (519)
Q Consensus 329 ~~~~~-----------~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (519)
.+... .|+. ..+..+...+...|+.++|..+++++.... +-+...+..+...+...|++++|++.
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 76521 1232 234556667788888899988888887642 44567778888888888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 395 IKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 395 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+++. +.++|++...+..++..+.+.|++++|..+++++.+.
T Consensus 416 l~~a---------------l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 416 LKKA---------------EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHH---------------HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7654 5677888888888999999999999999999999875
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=8.7e-13 Score=137.61 Aligned_cols=296 Identities=9% Similarity=-0.056 Sum_probs=224.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHh
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQ 213 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 213 (519)
.+......+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|+..++...+ .+...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3455667788899999999999998864 67888999999999999999999999998763 356688899999999
Q ss_pred cCChHHHHHHHHHHHHCCC----------------------------CC----CHHHHHHHHH-----------------
Q 044422 214 EWQVDMCLELYRMMRNSML----------------------------EP----NDFTFTSILS----------------- 244 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~----------------------------~p----~~~t~~~ll~----------------- 244 (519)
.|++++|+..|......+- .| ..........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432210 00 0000000000
Q ss_pred ------H----------HHccCCchHHHHHHHHHHHcC-C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh
Q 044422 245 ------A----------CTGSGALGQGRSAHCQTIRMG-F-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIV 303 (519)
Q Consensus 245 ------~----------~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~ 303 (519)
+ ....+++++|.+.++...+.+ . +.....++.+...+...|++++|...|+...+ | +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 0 011246778888888887754 2 33456778888888889999999999988764 3 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
.|..+...+...|++++|...|++..+.. +-+..++..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 77788888889999999999999887753 2346778888888888999999999999888753 334666777888888
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.|++++|...+++. +...|.++.+|..+..++...|++++|++.|++..+..
T Consensus 445 ~~g~~~eA~~~~~~a---------------l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRC---------------KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 899999999888754 45567788888889999999999999999999987754
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=6.3e-12 Score=131.52 Aligned_cols=390 Identities=9% Similarity=-0.013 Sum_probs=242.7
Q ss_pred ccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHH
Q 044422 39 ISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEK 118 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (519)
..+.|++..|+..|....+.....+ ..++ .++..++.. +....+...+.....+.+.........+......+++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3478999999999999874333221 1222 444444444 455566666666664444444344433333344448999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV 198 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 198 (519)
|+++|+++.+.... ++..+..++..+...++.++|.+.+..+... .|+...+-.++..+...++..+|+..++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999887533 5667777788888999999999999888765 45655665555555556666668888888862
Q ss_pred --C-ChhHHHHHHHHHHhcCChHHHHHHH------------------------------------------------HHH
Q 044422 199 --R-NVVSWTAIIAAFAQEWQVDMCLELY------------------------------------------------RMM 227 (519)
Q Consensus 199 --~-~~~~~~~li~~~~~~~~~~~a~~~~------------------------------------------------~~m 227 (519)
| +...+..+..++.+.|-...|+++. +.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 3444455555555554444444333 332
Q ss_pred HHC-CCCCCH-HH----HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 044422 228 RNS-MLEPND-FT----FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK- 300 (519)
Q Consensus 228 ~~~-g~~p~~-~t----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 300 (519)
... +-.|.. .- ..-.+-++...|+..++.+.++.+...+.+....+-..+.++|...+++++|..+|..+..+
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 111211 11 11233455566677777777777776665545566677777777777777777777765431
Q ss_pred --------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHccCCHHHHHH
Q 044422 301 --------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-------------KPDAI-TFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 301 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-t~~~ll~~~~~~g~~~~a~~ 358 (519)
+......|.-+|...+++++|..+++++.+... .||-. .+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122235566677777777777777777765211 12222 23334555666777777777
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHH
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWD 438 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~ 438 (519)
.++.+.... +-|......+...+...|.+.+|++.++.. ..++|++..+...++.++...|+|.
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a---------------~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV---------------ESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------hhhCCccHHHHHHHHHHHHhhhhHH
Confidence 777776532 346666666777777777777777766544 4567888888888999999999999
Q ss_pred HHHHHHHHHHHC
Q 044422 439 QAARVRKLMKDK 450 (519)
Q Consensus 439 ~A~~~~~~m~~~ 450 (519)
+|..+.+...+.
T Consensus 502 ~A~~~~~~l~~~ 513 (822)
T PRK14574 502 QMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhh
Confidence 998888776554
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=2.2e-12 Score=118.28 Aligned_cols=351 Identities=13% Similarity=0.109 Sum_probs=241.9
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|+..+ -+|+..+ .....+..++.++++-. +.++|.
T Consensus 191 K~G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~-----------------------------------~~ERA~ 227 (625)
T KOG4422|consen 191 KSGAVAD--LLFETLP------KTDETVSIMIAGLCKFS-----------------------------------SLERAR 227 (625)
T ss_pred ccccHHH--HHHhhcC------CCchhHHHHHHHHHHHH-----------------------------------hHHHHH
Confidence 4555555 4445444 35567888888887665 888999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH----HHHccC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY----KVFEEM 196 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m 196 (519)
+++++-.....+.+..+||.+|.+-+-. ...++..+|....+.||..|+|+++.+.++.|+++.|. +++.+|
T Consensus 228 ~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em 303 (625)
T KOG4422|consen 228 ELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM 303 (625)
T ss_pred HHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999988888888999999998875433 23788888988888999999999999999999887654 455555
Q ss_pred C----CCChhHHHHHHHHHHhcCChHH-HHHHHHHHHH----CCCC---C-CHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 197 P----VRNVVSWTAIIAAFAQEWQVDM-CLELYRMMRN----SMLE---P-NDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 197 ~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~---p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
+ +|...+|..+|..+++.++..+ +..++.+... ..++ | |..-|...+..|.+..+.+-|.++..-+.
T Consensus 304 KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 304 KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4 6888899999998888888754 4445555433 2222 3 44567788888888888888888877665
Q ss_pred HcC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 264 RMG----FFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 264 ~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
... +.|+ ..-|..+..+.|.....+.-...|+.|.- |+..+...++.+..-.|.++-.-++|.++...|
T Consensus 384 tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 384 TGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 421 3333 23456677788888888888888888874 566777778888888888888888888888877
Q ss_pred CCCCHHHHHHHHHHHHccC-C---HHH----------HHHH-------HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHH
Q 044422 333 VKPDAITFLGVISSCRHGG-L---VEE----------GKVY-------FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g-~---~~~----------a~~~-------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (519)
-+.+...-.-++..+++.. . .++ |..+ -.+|.+ ...+....+.+.-.+.+.|+.++|
T Consensus 464 ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA 541 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKA 541 (625)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHH
Confidence 5555544444444444433 1 110 1111 122333 345666788888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHhhhcCCCCc--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 392 RDFIKQMPIYPNAVIWEAAESRLLLEPECA--ATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.+++..+.-+.|. .|..+ .+...|+..-.+.+....|..+++-|...+.
T Consensus 542 ~e~l~l~~~~~~~------------ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 542 WEMLGLFLRKHNK------------IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHhcCCc------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 9998866111110 01111 1234467778888889999999999877654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=2e-11 Score=129.85 Aligned_cols=333 Identities=9% Similarity=-0.037 Sum_probs=244.0
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++|++++....... +.+...+..+...+...|+++.|..+|+..++.. +.+...+..+..++...|++++|...+
T Consensus 29 g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 38899999999998622 4456678899999999999999999999988763 456677888999999999999999999
Q ss_pred ccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 194 EEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 194 ~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
++... .+.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...+..+.|.+.++.... .|+
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~ 181 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPA 181 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHH
Confidence 98862 3455 8888899999999999999999998864 23455566678888888999999988876654 222
Q ss_pred H------HHHHHHHHHHH-----hcCCH---HHHHHHHHhcCC-----CChh-HH----HHHHHHHHHcCChHHHHHHHH
Q 044422 271 I------QVANSLISMYC-----KCGNV---EEAVYVFNNMHG-----KDIV-SW----NSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 271 ~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~~~~ 326 (519)
. .....++..+. ..+++ ++|++.++.+.+ |+.. .+ ...+.++...|++++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1 11222222222 12233 677777777663 2211 11 111345567799999999999
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC
Q 044422 327 EMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP---ELDHYSCVVDLLGRAGLLEEARDFIKQMP-IY 401 (519)
Q Consensus 327 ~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~ 401 (519)
.+.+.+.+ |+.. -..+..++...|++++|...|+.+.+..-.. .......+..++...|++++|..+++.+. ..
T Consensus 262 ~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99887632 4322 2224668889999999999999987643111 13456667778899999999999988872 22
Q ss_pred C-------------CHH---HH-----------------HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 402 P-------------NAV---IW-----------------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 402 p-------------~~~---~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
| +.. .+ ..+++++...|.++..+..++..+...|++++|++.+++..
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 210 11 45677788899999999999999999999999999999887
Q ss_pred HCCCCCCC
Q 044422 449 DKGLKTNP 456 (519)
Q Consensus 449 ~~g~~~~~ 456 (519)
... |+.
T Consensus 421 ~l~--Pd~ 426 (765)
T PRK10049 421 VLE--PRN 426 (765)
T ss_pred hhC--CCC
Confidence 754 664
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.57 E-value=6.7e-11 Score=126.48 Aligned_cols=386 Identities=10% Similarity=0.020 Sum_probs=238.8
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhcc-----------------------------ccccchhh
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTD-----------------------------SKHLDSQK 87 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------------------~~~~~~~~ 87 (519)
..+.+.|+.++|.+++..++.+....|....+.-.+....... +....+..
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4455899999999999998876555455544444433332110 00001111
Q ss_pred hcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-C-
Q 044422 88 FNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-G- 165 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g- 165 (519)
+ ....+... ....+.......+...++...+..|.+.. +-+....-.+--...+.|+.++|.+++...... +
T Consensus 335 ~----~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 335 L----LATLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred H----hcCCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 1 11111111 11222222222234455555555565541 124444444444556778888888888877652 1
Q ss_pred CCChHHHHHHHHHHHHhCCC---HHHHHHHHccC-------------------------C---CC--ChhHHHHHHHHHH
Q 044422 166 FIANVYVGSSLITLYSKCRV---IIDAYKVFEEM-------------------------P---VR--NVVSWTAIIAAFA 212 (519)
Q Consensus 166 ~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-------------------------~---~~--~~~~~~~li~~~~ 212 (519)
-.++....+.|+..|.+.+. ..++..+-..+ . .+ +...|..+..++.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 12344556677788877766 33333331111 1 12 4556677776666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
. ++.++|...+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..++.+.|++++|..
T Consensus 489 ~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 5 7777788877766654 356554444455556788888888888876554 3444455666777788888888888
Q ss_pred HHHhcCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 293 VFNNMHGKDIVSWN---SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 293 ~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.++...+.++...+ .+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.. +
T Consensus 564 ~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-P 640 (987)
T PRK09782 564 WLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-P 640 (987)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 88776653332222 2233334458888888888888764 4566777777788888888888888888887743 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-+...++.+...+...|+.++|...+++ ++++.|.++.++..+..++...|++++|...+++..+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~---------------AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLER---------------AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHH---------------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455667777788888888888877664 4567788888888888888888888888888888765
Q ss_pred CC
Q 044422 450 KG 451 (519)
Q Consensus 450 ~g 451 (519)
..
T Consensus 706 l~ 707 (987)
T PRK09782 706 DI 707 (987)
T ss_pred cC
Confidence 43
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=5.1e-11 Score=124.80 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=115.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-----LKPELDHYSCVVDLL 382 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~ 382 (519)
.+-++...|++.++++.|+.|...+.+....+-..+.++|...+.+++|..+++.+.... ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 355677889999999999999988866555677888999999999999999999987532 223444457889999
Q ss_pred HHcCCHHHHHHHHHhCCC-CC---------------CHHHH------------------HHHHHhhhcCCCCchhHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPI-YP---------------NAVIW------------------EAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~-~p---------------~~~~~------------------~~~~~~~~~~~~~~~~~~~L~ 428 (519)
..++++++|..+++++.- .| |-..+ ..+++.+...|.|+.....+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999998831 22 11111 556778889999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 429 NLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
..+...|.+.+|...++..... .|+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 9999999999999999776554 4554
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=2.3e-11 Score=119.45 Aligned_cols=287 Identities=10% Similarity=0.036 Sum_probs=216.4
Q ss_pred hhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHH--HHHHHHHh
Q 044422 105 FDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS--SLITLYSK 182 (519)
Q Consensus 105 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~ 182 (519)
..++..-..++++.|.+.+....+.+-.| ...|.....+..+.|+++.|...+..+.+. .|+...+. .....+..
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 34444444469999998888765542222 223444455557899999999999999764 55554333 33668889
Q ss_pred CCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCc
Q 044422 183 CRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND-------FTFTSILSACTGSGAL 252 (519)
Q Consensus 183 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~ 252 (519)
.|+++.|...++++.+ .++..+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998863 46778899999999999999999999999987755332 1333444444455556
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.....--.++.+....++.+++.+..+...+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 6666777666443 356788889999999999999999999988776433333334555566799999999999998763
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+-|......+...|.+.+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23555677888899999999999999999998 4699999999999999999999999998864
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=1.4e-10 Score=124.12 Aligned_cols=260 Identities=8% Similarity=-0.049 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
+...|..+..++.. ++.++|...+.+.. .|+......+...+...|++++|...|+++... +|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 55667777777766 67777877666654 244332223334445788888888888876543 34444556667777
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
.+.|+.++|...++...+.. +.....+..+.......|++++|...+++..+ |+...|..+...+.+.|++++|...
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 78888888888888877764 33333444444444556888888888887764 6667777888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 044422 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 325 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 404 (519)
+++..... +-+...++.+..++...|+.++|...++...+.. +-+...+..+..++...|++++|...+++.
T Consensus 632 l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A------ 703 (987)
T PRK09782 632 LRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV------ 703 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 88877753 2245566666667888888888888888887742 235667777888888888888888877654
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 405 VIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
++++|++..+.........+..+++.|.+-+++--.
T Consensus 704 ---------l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 704 ---------IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred ---------HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555666667777777777776665433
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=2.4e-13 Score=127.47 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=88.8
Q ss_pred HHHHHhCCCHHHHHHHHccC-C----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 177 ITLYSKCRVIIDAYKVFEEM-P----VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m-~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
...+.+.|++++|+++++.. . ..|...|..+.......++.+.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44555566666666666332 1 123344444555555566666666666666554321 33444455554 56666
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-----GKDIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
+++|..++....+.. ++...+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655543332 344455566666666666666666666543 1355566667777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 044422 327 EMMKQRVKP-DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAV 405 (519)
Q Consensus 327 ~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 405 (519)
+..+. .| |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|...+++.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~------- 240 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA------- 240 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH-------
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc-------
Confidence 77764 33 45566677777777777777777777776543 445556677777777888888887777643
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
++.+|+|+.....++.++...|+.++|.++.++.
T Consensus 241 --------~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 --------LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --------HHHSTT-HHHHHHHHHHHT---------------
T ss_pred --------cccccccccccccccccccccccccccccccccc
Confidence 4556677777777788888888888887777654
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=4.4e-10 Score=110.41 Aligned_cols=277 Identities=11% Similarity=-0.070 Sum_probs=211.6
Q ss_pred CCChhhHHHHHHHHHHhCCCChHHH-HHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHH--HHHHHHHhcCChHHHHH
Q 044422 148 TRNIRGGAPYQCLAIRTGFIANVYV-GSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWT--AIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~ 222 (519)
.|+++.|++.....-+.+ +++.. |-....+..+.|+++.|...+.++.+ |+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998777654432 22333 33334455889999999999999874 4443333 33668899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 345678889999999999999999999999998755333 233444555555566777888888
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH
Q 044422 296 NMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL 372 (519)
Q Consensus 296 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 372 (519)
.+.+ .++.....+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 7754 47788899999999999999999999998874 455532 23444456699999999999988753 3456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 373 DHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+..+.+.+.+.|++++|.+.|+.. ...|+...+. .|..++.+.|+.++|..++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-----------------~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-----------------WLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888999999999999999999987 4556655444 479999999999999999997643
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=2.4e-10 Score=112.88 Aligned_cols=288 Identities=13% Similarity=-0.006 Sum_probs=207.7
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHH
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDA-SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLY 180 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~ 180 (519)
...++..-..++++.|.+.+....+. .|++ ..+-....+..+.|+.+.|.+.+....+.. |+. .+.-.....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHH
Confidence 45555555566999999999887665 3443 334455667778899999999999987653 443 3344457788
Q ss_pred HhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCCch
Q 044422 181 SKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFT-SILSAC---TGSGALG 253 (519)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~---~~~g~~~ 253 (519)
...|+++.|...++.+.+ .+...+..+...+.+.|++++|.+.+..+.+.++.+ ...+. .-..++ ...+..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999873 466788899999999999999999999999887543 33231 111111 2222223
Q ss_pred HHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---HHHHHHHHHHcCChHHHHHHH
Q 044422 254 QGRSAHCQTIRMG---FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVS---WNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 254 ~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~ 325 (519)
.+...+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333444443332 124788999999999999999999999998876 43321 122222334457888899999
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 326 EEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 326 ~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+...+. .|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887765 3443 4556788889999999999999996554446799999999999999999999999999864
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=1.5e-11 Score=122.43 Aligned_cols=256 Identities=9% Similarity=0.027 Sum_probs=183.7
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 200 (519)
+++-.+...|+.|+..||.++|..||..|+.+.|- +|..|.-...+.+..+++.++.+..++++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45678888999999999999999999999999999 9999988888889999999999999999988776 789
Q ss_pred hhHHHHHHHHHHhcCChHH---HHHHHHHH----HHCCCCCCHHHHHHHHHHHHccCCchHHH---------HHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDM---CLELYRMM----RNSMLEPNDFTFTSILSACTGSGALGQGR---------SAHCQTIR 264 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~a~---------~~~~~~~~ 264 (519)
..+|+.|..+|..+|+... +.+.+... ...|+--...-+-..++++- +-...|. .++....+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999655 33322221 12233222222222222221 1111111 12222222
Q ss_pred cC-CCCcHHHHHH---HHHHHHhc-CCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 265 MG-FFSYIQVANS---LISMYCKC-GNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 265 ~~-~~~~~~~~~~---li~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.+ ..|...-++. +++-.... ..+++-..+-+...+ ++..+|..++.+-..+|+.+.|..++.+|.+.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 22 1111111111 13322222 234455555555554 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 389 (519)
-|..|+-+ .+....+..++..|.+.|+.|+..|+...+..+...|...
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 99998866 8888999999999999999999999998887777755433
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=1e-09 Score=108.45 Aligned_cols=280 Identities=12% Similarity=-0.033 Sum_probs=204.5
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCCHHHHHHHHccCCC--CCh--hHHHHHHHHHHhcCChHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKCRVIIDAYKVFEEMPV--RNV--VSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~ 221 (519)
..|+++.|.+.+....+. .|+.. .+-....+..+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 679999999999877664 45433 344456778889999999999998642 443 23344578888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH---H----hcCCHHHHHHHH
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY---C----KCGNVEEAVYVF 294 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~----~~~~~~~a~~~~ 294 (519)
..++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ . .....+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998875 3356788899999999999999999999999987544333222112222 2 222344555566
Q ss_pred HhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 295 NNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT--F-LGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 295 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
+...+ .++..+..+...+...|+.++|.+++++..+.. ||... + ....-.....++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 65543 378889999999999999999999999998863 34331 1 112222344578888999988887642
Q ss_pred CcCH--HHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHH
Q 044422 369 KPEL--DHYSCVVDLLGRAGLLEEARDFIKQ--M-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 369 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
+-|. ....++...+.+.|++++|.+.|+. . ...|+...+. .|...+.+.|+.++|.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-----------------~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-----------------MAADAFDQAGDKAEAAAM 392 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-----------------HHHHHHHHcCCHHHHHHH
Confidence 2233 5667899999999999999999994 2 3455555443 479999999999999999
Q ss_pred HHHHHH
Q 044422 444 RKLMKD 449 (519)
Q Consensus 444 ~~~m~~ 449 (519)
+++-..
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 998543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1.4e-12 Score=122.35 Aligned_cols=251 Identities=14% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGF-IANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~ 217 (519)
...+.+.|++++|.+++.......- +.|...|..+.......++++.|...++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3334444555555554433222211 12223333333344444455555555554442 122233334433 344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
++|.+++.+..+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444433221 233334444444455555555555554443321 223444444555555555555555555554
Q ss_pred cCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 297 MHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 297 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
..+ | |....+.++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|...+++..+.. +.|+.
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 432 2 23444445555555555555555544444332 2233334444555555555555555555554422 22444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
....+..++...|+.++|.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 444555555555555555555443
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.3e-10 Score=102.46 Aligned_cols=279 Identities=8% Similarity=0.038 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-CC-ChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-FI-ANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~-~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
..++++.-.+.....|++.+...-+....+.-...|+++|+.+|+++.+.. .. -|..+|+.++-.--.+..+.--...
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 444555555555555544443333333333334455666666666555542 11 1344555444222221111111111
Q ss_pred HccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH
Q 044422 193 FEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ 272 (519)
Q Consensus 193 ~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (519)
.-.+.+--+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+.+....+.. +.|-.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR 399 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR 399 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH
Confidence 111222334444555555556666666666666665543 2233455555566666666666666666666654 45556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (519)
.|-.|..+|.-.+.+.-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|......|-. +...+..|.+.|-+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~ 478 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEE 478 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 666666666666666666666665543 25566666666666666666666666666655422 44566666666666
Q ss_pred cCCHHHHHHHHHHHHH----cCC-Cc-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 350 GGLVEEGKVYFDSMAK----HGL-KP-ELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.++..+|.+.|++-.+ .|. .| +....--|..-+.+.+++++|..+..
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 6666666666655443 121 12 12222224455556666666655443
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=7.7e-11 Score=114.47 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-F-IANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
.+++|+..|... ...+.-+......+.++|-..+++++|+.+|+.+.+.. . .-+..+|.+.+.-+-+.-.+..--+-
T Consensus 334 ~~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567777788773 33344445666677778888888888888888876643 1 23566777776555432222221122
Q ss_pred HccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 193 FEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 193 ~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+-.+.+..+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|....... +.+-
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY 489 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY 489 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence 22222456789999999999999999999999998875 45 67899999899999999999999998876542 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 348 (519)
..|--+.-.|.|.++++.|+-.|++..+- +.+....+...+-+.|+.++|++++++......+ |...--.....+.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~ 568 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILF 568 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Confidence 45556778899999999999999988763 5566677777888999999999999998876544 3333334455677
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..++.++|++.++++++ +.|+ ...|..+.+.|.+.|+.+.|+.-|.-+
T Consensus 569 ~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 78999999999999998 4565 456777889999999999999877755
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=7.2e-10 Score=111.20 Aligned_cols=318 Identities=12% Similarity=0.060 Sum_probs=227.7
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++|.+++.+.++.. +-+...|-+|...|-+.|+.+++...+-.+- +-.+-|...|-.+-....+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 48899999999988875 3367788888889999999888887764432 223446678888888888889999999999
Q ss_pred ccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCchHHHHHHHHHHHc-
Q 044422 194 EEMPVR---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS----ILSACTGSGALGQGRSAHCQTIRM- 265 (519)
Q Consensus 194 ~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~g~~~~a~~~~~~~~~~- 265 (519)
.+..+. +...+---+..|-+.|+..+|.+.|.++.....+.|..-+.. +++.+...++.+.|.+.++.....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 887743 333444456778888999999999988887643333333333 344555666667777777766552
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----------------------ChhHHH----HHHHHHHHc
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----K----------------------DIVSWN----SMIAGYAQH 315 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~----------------------~~~~~~----~li~~~~~~ 315 (519)
+-..+...++.+...|.+...++.|......+.. + +..+|+ -++-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2244566778888888888888888877766543 1 111111 223344444
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 316 GLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
...+....+..-..+..+.| +...|.-+.+++...|++..|..+|..+......-+...|--+.++|...|.+++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 44444444555555555333 3456777888888889999999998888865444567788888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 394 FIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 394 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.|+. ++.+.|++..+-..|...|.+.|+.++|.+++..|.
T Consensus 471 ~y~k---------------vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 471 FYEK---------------VLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHH---------------HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 7764 467889999999999999999999999999999886
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=6.6e-11 Score=114.94 Aligned_cols=278 Identities=11% Similarity=0.044 Sum_probs=214.8
Q ss_pred ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC------CChhHHHHHHHHHHhcCChHHHHHH
Q 044422 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV------RNVVSWTAIIAAFAQEWQVDMCLEL 223 (519)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~ 223 (519)
+..+|...|+.+ ...+.-+..+...+..+|...+++++|.++|+.+.+ .+...|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567788888884 333344557788889999999999999999998863 4667777766543221 12222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 044422 224 Y-RMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI 302 (519)
Q Consensus 224 ~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 302 (519)
+ +.+.... +-...||..+.++|.-.++.+.|.+.|+...... +....+|+.+.+-+.....++.|...|+.....|+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2222221 3356799999999999999999999999988864 34788999999999999999999999999998888
Q ss_pred hHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 303 VSWNS---MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 303 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
..||+ +.-.|.+.++++.|.-.|++..+-+.. +.+....+...+-+.|+.|+|++++++..... +-|+-.--...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 77766 456789999999999999998875433 56666777778889999999999999998744 22444444466
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 380 DLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..+...+++++|+..+++++ ++.|+...+|..++..|.+.|+.+.|+.-|--|.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk---------------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELK---------------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHH---------------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 77788899999999888774 5567778889999999999999999999888776653
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.2e-11 Score=120.09 Aligned_cols=244 Identities=15% Similarity=0.192 Sum_probs=170.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD 301 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 301 (519)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|..|.....+.+..+|+.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999999 9999998888889999999999999999887776 788
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVD 380 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 380 (519)
..+|..+..+|...|++.. ++..++ -...+...+...|--..-..++..+. .-+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999776 222222 12223334444444444444444432 2233344333 333
Q ss_pred HHHHcCCHHHHHHHHHhCCC----CCCHH-------------HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHH
Q 044422 381 LLGRAGLLEEARDFIKQMPI----YPNAV-------------IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~~~----~p~~~-------------~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
.....|-++.+.+++..+++ .|-.. ....+.+.+.. ..++.+|..++..-..+|+++.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 34444555555555544431 11111 11111222222 46677888899999999999999999
Q ss_pred HHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCcc
Q 044422 444 RKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVH 504 (519)
Q Consensus 444 ~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~ 504 (519)
+.+|++.|+..++.++|-.+.+ .. ....++.++..|++.|+.|++.
T Consensus 227 l~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~se 272 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSE 272 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999777765554 22 2246677889999999999983
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=9.6e-09 Score=94.36 Aligned_cols=284 Identities=13% Similarity=-0.006 Sum_probs=207.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC----CChhHHHHHHHHHHhcCChHHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV----RNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
-.|++.+|+.....-.+.+-.| ...|-.-..+-...|+.+.|-+++.+..+ ++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3477888888777766665333 33455555666677788888777777653 344556666677777888888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
-+.+....+ +-+.........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777665 334556677778888888888888888888877755443 366777777766666777667777
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcC
Q 044422 296 NMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPE 371 (519)
Q Consensus 296 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~ 371 (519)
.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ .. ..-.+.+.++.+.-.+..+.-. .++- +
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 7653 4677778888899999999999999999998877766 22 2334667788877777777665 4443 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+..+..|...|.+.+.|.+|.+.|+.. ...|+..+|+. +..++.+.|+..+|..++++-...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~-----------------la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAE-----------------LADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHH-----------------HHHHHHHcCChHHHHHHHHHHHHH
Confidence 477888999999999999999999965 56677766665 799999999999999999987644
Q ss_pred CCCCC
Q 044422 451 GLKTN 455 (519)
Q Consensus 451 g~~~~ 455 (519)
-.+|.
T Consensus 391 ~~~~~ 395 (400)
T COG3071 391 TRQPN 395 (400)
T ss_pred hcCCC
Confidence 44443
No 40
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.7e-12 Score=84.24 Aligned_cols=50 Identities=16% Similarity=0.519 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888899999999999999999999999888899999999998888875
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.2e-12 Score=83.55 Aligned_cols=50 Identities=36% Similarity=0.646 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (519)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57778888888888888888888888888888888888888888877764
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.9e-09 Score=97.29 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=132.0
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
..|++++|.+.|.+.....-.-....||+ .-.+-..|++++|+++|-++.. .+......+...|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 35677778777777766543223333333 3345667888888888776543 4666666677777777788888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 044422 325 FEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN 403 (519)
Q Consensus 325 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 403 (519)
+-+.... ++.|......|...|-+.|+-.+|.+.+-+--+. ++.+..+...|...|....-+++|..+|++. -+.|+
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 7665433 4556777788888888888888888776554443 5667788888888888888888888888877 46888
Q ss_pred HHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 404 AVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..-|..+ +..++.+.|+|.+|+++++...+.
T Consensus 659 ~~kwqlm----------------iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLM----------------IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHH----------------HHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888775 567778889999999999887664
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=9.1e-09 Score=91.74 Aligned_cols=286 Identities=10% Similarity=0.084 Sum_probs=155.1
Q ss_pred ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-CCCh------hHHHHHHHHHHhcCChHHHHH
Q 044422 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP-VRNV------VSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~------~~~~~li~~~~~~~~~~~a~~ 222 (519)
+.++|.+.|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+++-+.+. .||. .+...|..-|...|-+|+|++
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4444555555544421 2223334444455555555555555554443 2222 122334455555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY----IQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+|..+.+.| ..-......|+..|-...+|++|.++-..+.+.+-.+. ...|--|...+....+++.|...+.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 665555433 22334455566666666666666666555555443322 2234444455555566777777776665
Q ss_pred CCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 044422 299 GKD---IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 299 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
+.| +.+--.+...+...|++..|.+.|+...+.+..--..+...|..+|...|+.+....++..+.+....++ .-
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~ 285 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AE 285 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HH
Confidence 432 2233334456777788888888888877765444455677777888888888888888887776432333 23
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH---hccCCHHHHHHHHHHHHHCC
Q 044422 376 SCVVDLLGRAGLLEEAR-DFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLY---AGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 376 ~~li~~~~~~g~~~~A~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~---~~~g~~~~A~~~~~~m~~~g 451 (519)
..+.+.-....-.+.|. .+.+.+.-+|+...+..+ +..- +..|++.+-..+++.|....
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl-----------------~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL-----------------MDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH-----------------HHhhhccccccchhhhHHHHHHHHHHH
Confidence 33333322222333443 344555667776655442 3322 22345677777888887766
Q ss_pred CCCCC
Q 044422 452 LKTNP 456 (519)
Q Consensus 452 ~~~~~ 456 (519)
++..+
T Consensus 349 l~~~~ 353 (389)
T COG2956 349 LRRKP 353 (389)
T ss_pred HhhcC
Confidence 55554
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=7e-09 Score=92.48 Aligned_cols=278 Identities=10% Similarity=0.131 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC-h--HHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA-N--VYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A~~ 191 (519)
+.++|+++|-+|.+.. +-+..+--++-+.|.+.|..+.|..+++.+.++.--+ + ....-.|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7899999999999842 2344455678888999999999999999998753211 1 2244567778899999999999
Q ss_pred HHccCCC-C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 192 VFEEMPV-R--NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND----FTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 192 ~~~~m~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
+|..+.+ + -..+...|+..|-...+|++|+++-.++.+.+-++.. .-|..|...+....+.+.|...+....+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9999886 3 3457788999999999999999999999887655543 2345555666667889999999998887
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI----VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340 (519)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 340 (519)
.. +-.+..--.+.+.+...|+++.|.+.|+.+.+.|+ .+...|..+|...|+.++....+..+.+....++ .-
T Consensus 209 a~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~ 285 (389)
T COG2956 209 AD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AE 285 (389)
T ss_pred hC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HH
Confidence 65 33445556677889999999999999999987665 3567788999999999999999999988644444 33
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA---GLLEEARDFIKQM 398 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 398 (519)
..+-+.-....-.+.|...+.+-... +|+...+..+|..-... |...+....+.+|
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 34444444455566777666666553 59999999999876543 4455666666665
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=2.3e-08 Score=91.96 Aligned_cols=287 Identities=13% Similarity=0.073 Sum_probs=228.1
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKC 183 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (519)
...++.+-.-++|.+|..+..+-.+.+-.| ...|..-..+..+.||.+.+-.++.+.-+.--.++..++-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 445555555669999999999988877554 4557777788889999999999999998764466777788888889999
Q ss_pred CCHHHHHHHHccC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCch
Q 044422 184 RVIIDAYKVFEEM---PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND-------FTFTSILSACTGSGALG 253 (519)
Q Consensus 184 g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~ 253 (519)
|+++.|..-.++. ...++........+|.+.|++.....++.+|.+.|+--|. .+|..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999998776655 4678899999999999999999999999999999875554 46777777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
.-...|+..... ...++..-.+++.-+.++|+.++|.++.++..+. |.. -...-.+.+-++...-.+..++..+.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 766677666543 3556677788899999999999999999887654 333 22333456777888777777766554
Q ss_pred -CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 332 -RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 332 -~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+-. .-.+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+..++.
T Consensus 324 h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 324 HPED--PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred CCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344 46788888999999999999999998777 5699999999999999999999999988865
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.6e-08 Score=92.66 Aligned_cols=327 Identities=11% Similarity=0.015 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCHHHHHH-
Q 044422 115 DVEKLISMHHDLHRERLKVD-ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV-YVGSSLITLYSKCRVIIDAYK- 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~- 191 (519)
.+++|+..+.+.++. .|| +..|...-.+|...|+|+.+.+.-...++. .|+- ..+..--.++-..|++++|+.
T Consensus 130 kY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 799999999999974 677 788888888999999999988777666654 3432 244444455555566555442
Q ss_pred ---------------------HHcc---------CC---C---CChhHHHHHHHHHHh----------------------
Q 044422 192 ---------------------VFEE---------MP---V---RNVVSWTAIIAAFAQ---------------------- 213 (519)
Q Consensus 192 ---------------------~~~~---------m~---~---~~~~~~~~li~~~~~---------------------- 213 (519)
++.+ +. + |+....++..+.|..
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 1111 11 1 222222222221111
Q ss_pred ---cC---ChHHHHHHHHHHHH---CCCCCC---------HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 214 ---EW---QVDMCLELYRMMRN---SMLEPN---------DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 214 ---~~---~~~~a~~~~~~m~~---~g~~p~---------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.+ .+.+|.+.+.+-.. .....+ ..+.......+.-.|+.-.+..-++..++....+ ...|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHH
Confidence 01 12222222221110 001111 1222222223345678888999999988875333 33366
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
-+..+|...++.++....|+.... .|+.+|..-...+.-.+++++|..=|++.+..... +...|..+..+..+.++
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHH
Confidence 667789999999999999998764 36678877777777788999999999998765321 45566666667778899
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------HHHH-----------------
Q 044422 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN-------AVIW----------------- 407 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~~----------------- 407 (519)
++.+...|++.++. ++--+..|+.....+..+++++.|.+.|+.. ...|+ ...+
T Consensus 444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a 522 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA 522 (606)
T ss_pred HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence 99999999998864 6667888999999999999999999999875 33333 1111
Q ss_pred -HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 408 -EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 408 -~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+.+.++++++|.+.-+|..|...-...|+.++|+++|++-.
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999854
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.21 E-value=6.1e-08 Score=98.42 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHhHCCCC--CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLISMHHDLHRERLK--VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 190 (519)
++..++.+...+...... .-+..|-.+.+++-..|++++|...|....+. .++. ..+-.|...|.+.|+++.+.
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHH
Confidence 888888888887764311 12334667788888889999999888776654 3443 34556788888899999998
Q ss_pred HHHccCCC---CChhHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHH---
Q 044422 191 KVFEEMPV---RNVVSWTAIIAAFAQEW----QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC--- 260 (519)
Q Consensus 191 ~~~~~m~~---~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--- 260 (519)
..|+.+.. .+..+...|...|...+ ..++|..++.+....- +.|...|..+...+-...-+.. ..+|.
T Consensus 363 ~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~ 440 (1018)
T KOG2002|consen 363 FCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNAL 440 (1018)
T ss_pred HHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHH
Confidence 88888763 34456666666666654 4566666666665543 4466677666666655443333 44443
Q ss_pred -HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 261 -QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 261 -~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
.+...+.++.+...|.+...+...|++.+|...|+...
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 33455656778888888888888888888888887654
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=6.9e-09 Score=94.23 Aligned_cols=194 Identities=10% Similarity=0.065 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
..+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555443 1223344444455555555555555555444432 122333444444444
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
..|++++|.+.++...+....+ .....+..+...+...|++++|...+++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HcccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555554444444321101 1122344444555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 161 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 161 ALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55432 112334455555555556666666666555543 223344444555555555666666555444
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=1.3e-08 Score=92.43 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=103.1
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQ 314 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 314 (519)
.+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444332 22334444555555555555555555554432 233456666667777
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 315 HGLAVRAIDLFEEMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 315 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
.|++++|.+.+++..+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 78888888888877664322 234456667788899999999999999998753 3356678889999999999999999
Q ss_pred HHHhC
Q 044422 394 FIKQM 398 (519)
Q Consensus 394 ~~~~~ 398 (519)
.+++.
T Consensus 191 ~~~~~ 195 (234)
T TIGR02521 191 YLERY 195 (234)
T ss_pred HHHHH
Confidence 99876
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.1e-08 Score=92.54 Aligned_cols=289 Identities=12% Similarity=0.144 Sum_probs=218.5
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCC------ChhHHHHHHHHHHhcC
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVR------NVVSWTAIIAAFAQEW 215 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~~ 215 (519)
..++......+.+.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+. |..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3445555677777777788888888777777777777778889999999999999753 55677766543 333
Q ss_pred ChHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 216 QVDM---CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 216 ~~~~---a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
+..- |..++ .-. +--..|+..+.+-|+-.++.++|...|+...+.+ +.....|+.+.+-|....+...|.+
T Consensus 312 ~skLs~LA~~v~---~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVS---NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHH---Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 2222 22222 111 2334678888899999999999999999999986 5667899999999999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 293 VFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 293 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.++...+ .|-..|-.+..+|.-.+.+.=|+-.|++..+.. +-|...|..|.++|.+.++.++|.+.|......| .
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 9998765 477899999999999999999999999998763 4478899999999999999999999999999877 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.+...+..|.+.|-+.++..+|...|++.-. +. ...-..+|....+..-|..-+.+.+++++|........
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~-----~~---~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE-----VS---ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HH---HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3668899999999999999999998876510 00 00000111111222237788888888888888665543
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2e-07 Score=94.86 Aligned_cols=312 Identities=12% Similarity=0.033 Sum_probs=186.0
Q ss_pred ccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhcCCChhhHHHHHH
Q 044422 82 HLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRE--RLKVDASFLSTAVTSCGSTRNIRGGAPYQC 159 (519)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 159 (519)
.+.+.+.|......++...-..+-.+-..-+.+++..|+.+|...... ..+||... .+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 344555555555555444434444444444445888888888886543 34555532 23355668888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCC---HHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 044422 160 LAIRTGFIANVYVGSSLITLYSKCRV---IIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE 233 (519)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 233 (519)
..++.. +-++.++-.|.-.-....+ +..+...+...- ..|++..+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 887653 2222333333222222222 334444444332 357788888888888888888888888877654311
Q ss_pred --CCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHH
Q 044422 234 --PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSM 308 (519)
Q Consensus 234 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 308 (519)
.-+..|-.+.+++-..|++++|...|.+..+..-......+--+...|.+.|+++.+...|+.+.+ | +..+..++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 123457778888888888888888887776653222234455677888888888888888887764 2 34455555
Q ss_pred HHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCcCHHHHHHHHH
Q 044422 309 IAGYAQHG----LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA----KHGLKPELDHYSCVVD 380 (519)
Q Consensus 309 i~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~li~ 380 (519)
...|+..+ ..++|..++.+..+.- +.|...|..+...+.. ++...++.++.... ..+-.+.+...|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 55555553 3455555555555442 3355555555544443 33333355544433 3444466666677776
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 044422 381 LLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~ 398 (519)
.....|++++|...|+..
T Consensus 461 lhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHhcChHHHHHHHHHH
Confidence 677777777777666654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.9e-08 Score=103.25 Aligned_cols=173 Identities=8% Similarity=-0.040 Sum_probs=82.7
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 186 IIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 186 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
+++|...+++..+ .+...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++..
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555555432 234445555555555555666666555555543 223344555555555556666666555555
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.+.. +.+...+..++..+...|++++|...+++..+ | ++..+..+..++...|+.++|...+.++... .|+..
T Consensus 399 l~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 399 LKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred HhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 5543 11222222233334445555666555554431 2 2333444555555666666666666554332 22222
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 339 -TFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 339 -t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
..+.+...+...| +.+...++.+.
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 2233333344444 35555555444
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.12 E-value=5.8e-07 Score=87.65 Aligned_cols=341 Identities=12% Similarity=0.044 Sum_probs=215.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
.++-|..+|....+- ++-+...|......--..|..+....+++.++.. .+-....|-....-+...|++..|..++.
T Consensus 531 ~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 531 AIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred hHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 556666666666553 3335555666655555666777777777776665 23344455555556666777777777766
Q ss_pred cCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
..- ..+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---.++.++|.++++...+. ++.-.
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~ 685 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFH 685 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchH
Confidence 654 234456666666667777777777777666553 455555555555555566777777777666654 23334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 348 (519)
..|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|.+-.|..++++..-.+.+ +...|...|+.-.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~El 764 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMEL 764 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHH
Confidence 5666777777777777777777765443 2 3455666666556666777777777776665433 5566667777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH---------------HHHHHh
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIW---------------EAAESR 413 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~---------------~~~~~~ 413 (519)
+.|..+.|..++.+.++. ++-+...|..-|....+.++-....+.+++..-.|....- .=++++
T Consensus 765 R~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666543 3444455555555555555555555555554333322111 224567
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEc
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIM 464 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 464 (519)
++.+|++..+|.-+...+..+|.-++-.+++..-... .|..|..|..+.
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 7889999999999999999999999888988877653 577777776443
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.1e-07 Score=86.72 Aligned_cols=349 Identities=13% Similarity=0.097 Sum_probs=219.7
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhccc------------CCCCCCCCchhhhhh--
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHD------------FTGTNSTFGSSNVFD-- 106 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-- 106 (519)
+.|.+++|..-|+...+ ..+.....++.++..++..+. +.....|.. +.+.......+.+..
T Consensus 288 q~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~--ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDA--EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred ecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcH--HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 78999999999998763 334456677777777654432 111111211 122222222222222
Q ss_pred ------hhhcCCccCHHHHHHHHHHHhHCCCCCCHHH-------------HHH--------HHHHHhcCCChhhHHHHHH
Q 044422 107 ------QLLDTPVVDVEKLISMHHDLHRERLKVDASF-------------LST--------AVTSCGSTRNIRGGAPYQC 159 (519)
Q Consensus 107 ------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-------------~~~--------ll~~~~~~~~~~~a~~~~~ 159 (519)
.+...+..+.+.++-.-.++..--+.||-.. +.- -..-+.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2222333345555544444443333333210 000 1122456777888877777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHh--CCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 044422 160 LAIRTGFIANVYVGSSLITLYSK--CRVIIDAYKVFEEMPVR---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 234 (519)
...+..-+.-...-+.|-..+.- -.++..|...-+..... +......-.......|++++|.+.|++.....-..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 66554433222333333332222 23455555555544322 22222222233345789999999999998765444
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAG 311 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 311 (519)
....|+ +.-.+-..|++++|...|-.+... +..+..+.-.+.+.|-...+...|++++-+... .|+.....|...
T Consensus 524 ~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 334443 334456789999999988776543 245677777788889889999999999987664 478888999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HHcCCHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL-GRAGLLEE 390 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~ 390 (519)
|-+.|+-..|.+.+-+--+. ++-+..|...|...|....-++++...|++..- ++|+..-|..++-.| .+.|++.+
T Consensus 602 ydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999877664443 566788888888888888889999999998765 789999999877655 56899999
Q ss_pred HHHHHHhC
Q 044422 391 ARDFIKQM 398 (519)
Q Consensus 391 A~~~~~~~ 398 (519)
|+++|++.
T Consensus 679 a~d~yk~~ 686 (840)
T KOG2003|consen 679 AFDLYKDI 686 (840)
T ss_pred HHHHHHHH
Confidence 99999987
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=3.5e-08 Score=101.34 Aligned_cols=243 Identities=12% Similarity=-0.034 Sum_probs=127.2
Q ss_pred HHHHHHHHccCCC--C-ChhHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch
Q 044422 186 IIDAYKVFEEMPV--R-NVVSWTAIIAAFAQ---------EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 186 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
+++|...|++..+ | +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 4566666666542 2 23344444433321 233566666666666543 224455556666666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KD-IVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+|...+++..+.. +.+...+..+...+...|++++|...++...+ |+ ...+..+...+...|++++|...+++..+
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 7777776666654 44455666666666667777777777766543 22 12223333345556666777776666654
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH
Q 044422 331 QRVKP-DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE 408 (519)
Q Consensus 331 ~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 408 (519)
.. .| +...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.
T Consensus 435 ~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll--------- 500 (553)
T PRK12370 435 QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFL--------- 500 (553)
T ss_pred hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHH---------
Confidence 42 22 2333444555566667777777766665432 232 222333444455555 35555444431
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 409 AAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.....+.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 501 ---~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 501 ---ESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ---HHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111111222211 34555556666666555 7766654
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.09 E-value=5.1e-07 Score=91.28 Aligned_cols=298 Identities=12% Similarity=0.067 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc---CCCCChhHHHHHHHHHH
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE---MPVRNVVSWTAIIAAFA 212 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~ 212 (519)
.......+...-.|+.+.|..++.++++.. +.+...|-.|...|-..|+.+++...+-. +.+.|...|-.+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333333333334499999999999999875 55778899999999999999999887744 44678889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHhcCCHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ----VANSLISMYCKCGNVE 288 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~ 288 (519)
+.|+++.|.-+|.+..+.. +++...+-.-...|-+.|+...|...+.++....-+.|.. .--..++.|...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999875 5566666677788999999999999999998875333322 3344567777888888
Q ss_pred HHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---------------------------
Q 044422 289 EAVYVFNNMHG-----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--------------------------- 336 (519)
Q Consensus 289 ~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------------------- 336 (519)
.|.+.++.... -+...+++++..|.+...++.|......+......+|
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 88888887654 2456788999999999999999999888876222222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP--ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
... ..+.-++.+....+....+...+.+..+.| +...|.-+.++|.+.|++.+|..++..+...|..
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~---------- 446 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY---------- 446 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc----------
Confidence 222 123334556666666677777777666444 5678899999999999999999999988322211
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+..+|..++..|...|.++.|...|+.....
T Consensus 447 ----~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 447 ----QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred ----cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 12346777899999999999999999998765
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.08 E-value=7e-07 Score=89.02 Aligned_cols=248 Identities=10% Similarity=0.003 Sum_probs=142.3
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----CHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-----VIID 188 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~ 188 (519)
++.++|++.++.-.. .+......+......+.+.|+.++|..+|..+++.+ +.|..-|..+..+.+-.. +.+.
T Consensus 18 g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 18 GDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHH
Confidence 499999999977543 344445556677788889999999999999999986 455666777777763333 4666
Q ss_pred HHHHHccCCC--C--------------------------------C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 044422 189 AYKVFEEMPV--R--------------------------------N-VVSWTAIIAAFAQEWQVDMCLELYRMMRNS--- 230 (519)
Q Consensus 189 A~~~~~~m~~--~--------------------------------~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 230 (519)
...+++++.. | . +.+|+.+-..|....+.+-..+++......
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 6777776641 1 1 223344444444333333334444443221
Q ss_pred -C----------CCCCH--HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 231 -M----------LEPND--FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 231 -g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
+ -+|+. .++..+...|...|+.++|.+.++..+++. +-.+..|..-...|-+.|++.+|.+.++..
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0 12222 233444555566666666666666666653 223556666666666666666666666655
Q ss_pred CCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 298 HGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI--------TFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 298 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
.+- |-..-+..+..+.++|++++|.+++....+.+..|-.. ...-...+|.+.|++..|++-|..+.
T Consensus 255 r~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 255 RELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 542 33444455555666666666666666665544322211 11223445566666666666555544
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.08 E-value=3.9e-06 Score=82.05 Aligned_cols=325 Identities=12% Similarity=0.061 Sum_probs=242.4
Q ss_pred cCHHHHHHHHHH----HhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCCHH
Q 044422 114 VDVEKLISMHHD----LHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA--NVYVGSSLITLYSKCRVII 187 (519)
Q Consensus 114 ~~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~ 187 (519)
++.+.+..+..+ +...|+..+...|..=...|-..|..-.+..+....+.-|+.- -..+|..--..|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 355666555544 4567888888888888888888888888888888888777643 2357888888888899999
Q ss_pred HHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 188 DAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 188 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
-|..+|....+ .+...|......--..|..++...+|++....- +-....|.....-+-..|++..|..++..+.+
T Consensus 534 carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99888887763 456677777777777888888888888887753 33344455555666677999999999988887
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 044422 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFL 341 (519)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~ 341 (519)
.. +.+..++-+.+..-..+.+++.|..+|.+... ++...|.--+..---.++.++|.+++++..+. -|+ ...|.
T Consensus 613 ~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~l 689 (913)
T KOG0495|consen 613 AN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWL 689 (913)
T ss_pred hC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHH
Confidence 75 45778888888888889999999999987764 56677776666667778889999998888764 444 34566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
.+-+.+-+.++++.|...|..=.+. ++-.+..|-.|.+.=-+.|+.-+|..++++. ...+|++.
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra---------------rlkNPk~~ 753 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA---------------RLKNPKNA 753 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH---------------HhcCCCcc
Confidence 6666777788888887776654332 3445667777777777788888888887765 34568888
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEE
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSW 460 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 460 (519)
..|...+++=.+.|+.+.|..++-+..+. -|..+.-|
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LW 790 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLW 790 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhH
Confidence 88888999999999999999887776554 25554444
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.5e-08 Score=90.45 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=185.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
+.+..+|.+.|-+.+|.+.|+.-... .|-..||..|-++|.+..++..|..++.+-.+. ++-++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999888775 566778889999999999999999999888776 344555556677788888
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
++.++|.++|+...+ .++.+..++...|.-.++++.|+++|+++.+.|+. +...|+.+--+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998775 35666777778889999999999999999999987 66678888778888899999999888
Q ss_pred HHHHcCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 362 SMAKHGLKPE--LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 362 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+....--.|+ ...|-.+.......|++.-|.+.|+-. +..++++..+++.|...-.+.|++++
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla---------------L~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA---------------LTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH---------------hccCcchHHHHHhHHHHHhhcCchHH
Confidence 8875433343 345666777777788888888777643 45567788899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 044422 440 AARVRKLMKDKG 451 (519)
Q Consensus 440 A~~~~~~m~~~g 451 (519)
|..+++..+...
T Consensus 448 Arsll~~A~s~~ 459 (478)
T KOG1129|consen 448 ARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHhhhhC
Confidence 999999877653
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=5.8e-08 Score=95.50 Aligned_cols=238 Identities=12% Similarity=0.092 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHHccCCchHHHHHHHHHHHc-----C--C
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNS-----M-LEPNDFTF-TSILSACTGSGALGQGRSAHCQTIRM-----G--F 267 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~ 267 (519)
.+...+...|...|+++.|+.+++...+. | ..|...+. +.+...|...+++++|..+|+.+... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555888999999999999999877553 2 13444433 44777888899999999999988753 2 1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----------KDI-VSWNSMIAGYAQHGLAVRAIDLFEEMMKQ---RV 333 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 333 (519)
+.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.+...++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22355788888899999999998887776542 222 34667778889999999999999876542 13
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCC--Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 334 KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAK----HGL--KP-ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 334 ~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
.++ ..+++.|...|.+.|++++|.+++++... .+- .+ ....++.|...|.+.+++.+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~--- 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK--- 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH---
Confidence 333 35899999999999999999999998873 111 22 24567889999999999999999998762
Q ss_pred CHHHHHHHHHhhhc-CCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 403 NAVIWEAAESRLLL-EPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 403 ~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+.+ +.+.. .|+...+|..|+..|.+.|++++|.++.+...
T Consensus 437 -----~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 -----DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred -----HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 22222 23444688999999999999999999988764
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.9e-06 Score=79.90 Aligned_cols=332 Identities=13% Similarity=0.092 Sum_probs=188.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
+..+|..+|+....-.. -+...|..-+..=.+...+..|..+|+..+..= +.-...|-..+.+=-..|++..|.++|+
T Consensus 88 e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 56666666666655332 244444444555555566666666666655431 1112233334444444566666666665
Q ss_pred cCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc-CC-CCc
Q 044422 195 EMP--VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM-GF-FSY 270 (519)
Q Consensus 195 ~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~ 270 (519)
+-. +|+...|++.|.-=.+.+.++.|..+|++..- +.|+..+|.--...=-+.|+...+..+|....+. |- ..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 544 46666666666666666666666666666544 2456666555555555556666666555554432 10 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhc--------------------------------------------CCC---Chh
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNM--------------------------------------------HGK---DIV 303 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------------------------~~~---~~~ 303 (519)
...+.+...--.++..++.|.-+|+-. .+. |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 122222222222223333333333211 111 344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH---HHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA-------ITFLGVISS---CRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+ -....+++.+.++++...+. ++-...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 5666666666778999999999998865 45532 122111111 13467888899999888872 344445
Q ss_pred HHHHHH----HHHHHcCCHHHHHHHHHhC-CCCCCHHHH-----------------HHHHHhhhcCCCCchhHHHHHHHH
Q 044422 374 HYSCVV----DLLGRAGLLEEARDFIKQM-PIYPNAVIW-----------------EAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 374 ~~~~li----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
||.-+= .--.++.++..|.+++-.. |.-|-..+| ..+++-+.-.|.+..++.-.+..=
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 554433 3335677888888887664 555655555 344566677788888888888888
Q ss_pred hccCCHHHHHHHHHHHHHCCC
Q 044422 432 AGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~ 452 (519)
...|+++.|..+|+....+..
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcc
Confidence 888999999999988877643
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=1.3e-07 Score=92.98 Aligned_cols=228 Identities=12% Similarity=0.106 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC----------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-C
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV----------RNVV-SWTAIIAAFAQEWQVDMCLELYRMMRNS-----ML-E 233 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~ 233 (519)
.+...|...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444466666666666666666655431 2222 2233555667777777777777776431 21 1
Q ss_pred C-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc-----CC-CCc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCC------
Q 044422 234 P-NDFTFTSILSACTGSGALGQGRSAHCQTIRM-----GF-FSY-IQVANSLISMYCKCGNVEEAVYVFNNMHG------ 299 (519)
Q Consensus 234 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~------ 299 (519)
| -..+++.|...|.+.|++++|...++...+. |. .|. ...++.+...++..+++++|..++....+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2245666666777777777776665554431 11 122 22445566667777777777766664331
Q ss_pred -C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH--
Q 044422 300 -K-D---IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RV--KP-DAITFLGVISSCRHGGLVEEGKVYFDSMAK-- 365 (519)
Q Consensus 300 -~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-- 365 (519)
+ + ..+++.|...|...|++++|.+++++.... +. .+ ....++.|...|.+.+.++.|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1 2 246777888888888888888888776542 11 11 234567777778888888877777766543
Q ss_pred --cCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 366 --HGL--KPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 366 --~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.|. +-...+|..|...|.+.|++++|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 221 123456778888888888888888877655
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.8e-06 Score=75.76 Aligned_cols=299 Identities=10% Similarity=0.005 Sum_probs=209.2
Q ss_pred CCCCHHHHHHHHHHHhc--CCChhhHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHH---
Q 044422 131 LKVDASFLSTAVTSCGS--TRNIRGGAPYQCLAIRTG-FIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSW--- 204 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 204 (519)
+.|+-.+....+.++++ .++...+.+.+-.+.... ++-|......+..++...|+.++|+..|++...-|+.+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 34444444555555543 355555555555444333 556778899999999999999999999998874443332
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
....-.+.+.|+.+....+...+.... ..+...|-.-........++..|..+-+..+... +.+...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 223344567888888888877776542 2334444444455556778888888887777664 44556666666778889
Q ss_pred CCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVI-SSCR-HGGLVEEGKVY 359 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~g~~~~a~~~ 359 (519)
+++++|.-.|+.... | +...|.-|+.+|...|++.+|.-+-+...+. ++-+..+.+.+- ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999987653 3 7789999999999999999999887776554 344566665552 3333 23345889999
Q ss_pred HHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 360 FDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 360 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
++.-.+ +.|+ ....+.+...+...|..+++..++++. ...||.. .+..|...+.....+
T Consensus 427 ~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-----------------LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 427 AEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-----------------LHNHLGDIMRAQNEP 487 (564)
T ss_pred HHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-----------------HHHHHHHHHHHhhhH
Confidence 888776 4455 345677888889999999999998875 4445544 455589999999999
Q ss_pred HHHHHHHHHHHHCC
Q 044422 438 DQAARVRKLMKDKG 451 (519)
Q Consensus 438 ~~A~~~~~~m~~~g 451 (519)
.+|++.|....+..
T Consensus 488 Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 488 QKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998876643
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=5.2e-08 Score=87.02 Aligned_cols=222 Identities=10% Similarity=0.027 Sum_probs=187.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP--VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF-TSILSACTGS 249 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~ 249 (519)
-+.+..+|.+.|-+.+|.+.|+... .|-+.||-.|-.+|.+..++..|+.++.+-.+. -|-.+|| .-..+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678899999999999999998876 478889999999999999999999999887764 4555555 5577788889
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+++|+.+.+ .++..|+.+.-+|.-.+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999998875 56777777788888899999999999998765 578899999999999999999999999
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 327 EMMKQRVKPDA--ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 327 ~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+....-..|+. ..|-.+-......|++..|.+.|+....++ .-....++.|.-.-.+.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 88776544553 356666667788999999999999988764 346678898988889999999999999877
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=4.9e-06 Score=78.38 Aligned_cols=330 Identities=8% Similarity=0.049 Sum_probs=161.8
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
.+++..|.++|++..+ -.|+...|++.++.=.+-..++.|..+++..+-. .|++.+|-.....=.+.|++..|..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4466777777777664 4678888888888777777888888888776543 47777777666666777777777777
Q ss_pred HccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHH------
Q 044422 193 FEEMPV------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSA------ 258 (519)
Q Consensus 193 ~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~------ 258 (519)
|+...+ -+...++++..-=.++..++.|.-+|+-.... ++-+ ...|......=-+-|+....+..
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 766542 12223444443334445555555555544443 1111 12232232222333433332221
Q ss_pred --HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hHHHHHH--------HHHHHcCChHHHHH
Q 044422 259 --HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDI---VSWNSMI--------AGYAQHGLAVRAID 323 (519)
Q Consensus 259 --~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~li--------~~~~~~g~~~~A~~ 323 (519)
|+.+.+.+ +.|-.+|--.++.--..|+.+...++|+.... |.. .-|...| -.=....+.+.+.+
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222222 34444555555555555666666666665442 100 0111111 01113344555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 044422 324 LFEEMMKQRVKPDAITFLGVISS----CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM- 398 (519)
Q Consensus 324 ~~~~m~~~~~~p~~~t~~~ll~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 398 (519)
+|+...+. ++....||..+=-. -.++.++..|.+++.... |..|...+|...|..=.+.++++.+..++++.
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55544441 22223333322111 123344444554444433 23344444544444444455555555554443
Q ss_pred CCCC-CHHHHHH---HHHh------------hhcCCCCch----hHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 399 PIYP-NAVIWEA---AESR------------LLLEPECAA----THVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 399 ~~~p-~~~~~~~---~~~~------------~~~~~~~~~----~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
...| |..+|.. ++.. +.++.+... .+-..|.-=...|.++.|..+++++.+..
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 2222 2223300 0000 001111111 22233555567899999999999998874
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=7.8e-07 Score=83.71 Aligned_cols=221 Identities=15% Similarity=0.061 Sum_probs=143.2
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 215 WQVDMCLELYRMMRNSM-LEPN--DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666666432 2222 3456667777788888888888888877764 456778888888888888888888
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 292 YVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 292 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
..|+...+ | +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...+++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 88887754 3 4567777888888899999999999888775 343322222222344567889999998765532 2
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.|+...+ .+ .....|+..++ +.++.+. ..+....++.|..+.+|..|+..+...|++++|...|++..
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~--------~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLK--------AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHH--------hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3332222 22 22334555443 2333221 00011123345556788889999999999999999999988
Q ss_pred HCC
Q 044422 449 DKG 451 (519)
Q Consensus 449 ~~g 451 (519)
+..
T Consensus 264 ~~~ 266 (296)
T PRK11189 264 ANN 266 (296)
T ss_pred HhC
Confidence 765
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.3e-06 Score=84.01 Aligned_cols=279 Identities=11% Similarity=0.043 Sum_probs=181.8
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAI 207 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~l 207 (519)
..-+......-..-|-...++....++.+...+.. +++...+-.-|.++...|+..+-..+=.++. +..+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34466666666666777778888888887777653 5566666666777777777665555555554 2355677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcC
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM--GFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 285 (519)
.--|...|+..+|.+.|.+.-..+.. =...|......++-.|.-++|...+...-+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 77777778888888888766443211 1346677777777777778877777666543 211 11222 233466677
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHccCCHHHH
Q 044422 286 NVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----R--VKPDAITFLGVISSCRHGGLVEEG 356 (519)
Q Consensus 286 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~p~~~t~~~ll~~~~~~g~~~~a 356 (519)
+.+.|.++|..... .|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 78888888876653 36666777766666677778888777765521 1 111344677777788888888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHhhh
Q 044422 357 KVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIW-EAAESRLL 415 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~~~~~~~ 415 (519)
...++...... +.+..++.++.-.|...|+++.|.+.|.+. .++|+..+. ..+..+++
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 88888877643 457777888888888888888888888765 567766433 33344443
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=7.5e-06 Score=81.79 Aligned_cols=291 Identities=13% Similarity=0.114 Sum_probs=197.1
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHH-HHHHHHHhc---
Q 044422 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWT-AIIAAFAQE--- 214 (519)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~-~li~~~~~~--- 214 (519)
-...+...|++++|++.++.-... +.............+.+.|+.++|..++..+.. |+-..|. .+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 344567889999999999764333 444556778888999999999999999999974 5544444 444444222
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 215 --WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG-QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 215 --~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
.+.+....+|+++...- |.......+.-.+.....+. .+...+..+...|+|+ +|+.+-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 35778888898886642 44443333333333322332 3455667777778654 4666666666555555555
Q ss_pred HHHHhcCC------------------CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 044422 292 YVFNNMHG------------------KDIV--SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISSCRHG 350 (519)
Q Consensus 292 ~~~~~~~~------------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 350 (519)
+++..... |... ++.-+...|...|++++|++++++.++. +|+ ...|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 55554321 2222 3455567788999999999999999886 455 55677777889999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHhhhcCCCCchhHHHH
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP---IYPNAVIWEAAESRLLLEPECAATHVQL 427 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~L 427 (519)
|++++|...++...... .-|...-+..+..+.++|++++|.+++...- ..|-...+.. .+.......
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m---------Qc~Wf~~e~ 311 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM---------QCMWFETEC 311 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH---------HHHHHHHHH
Confidence 99999999999999865 3477777778999999999999999988772 1111111100 111233445
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 044422 428 ANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+.+|.+.|++..|++-|....+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8899999999999988776544
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.9e-06 Score=76.55 Aligned_cols=276 Identities=9% Similarity=0.015 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhHC-CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRE-RLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 192 (519)
+...|..++-.+... -++-|......+...+...|+...|...|+..... .|+.. ......-.+.+.|+.+....+
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 334444444333332 36668888999999999999999999999987654 33322 222223345667777776666
Q ss_pred HccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 044422 193 FEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269 (519)
Q Consensus 193 ~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 269 (519)
...+- +.....|-.-.......+++..|+.+-++..+.. +-+...|..-...+...|+.++|.-.|....... +.
T Consensus 289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~ 366 (564)
T KOG1174|consen 289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PY 366 (564)
T ss_pred HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hh
Confidence 65554 2345556555666677889999999998887754 3345566666677888999999999998887764 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHH-HHHH-HcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMI-AGYA-QHGLAVRAIDLFEEMMKQRVKPD-AITFLGV 343 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~l 343 (519)
+...|.-|++.|...|++.+|.-.-+...+ .+..+.+.+. ..+. .-..-++|.++++.-.+ +.|+ ....+.+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLI 444 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHH
Confidence 789999999999999999998876654332 2333333331 1122 12235788888887665 4565 3456677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
...|...|..+.+..++++... ..||....+.|.+.+...+.+.+|++.|...
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7789999999999999999887 5699999999999999999999999988754
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=2.1e-07 Score=86.35 Aligned_cols=248 Identities=10% Similarity=0.005 Sum_probs=158.7
Q ss_pred HHHHhCCCHHHHHHHHcc--CCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH
Q 044422 178 TLYSKCRVIIDAYKVFEE--MPV-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~--m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 254 (519)
+-+.-.|++..++.-.+. ..+ .+......+.+++...|+.+.++ .+..... .|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 344456777777754441 111 12334555667888888777544 3333333 5665555555444443344444
Q ss_pred HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 255 GRSAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 255 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
+..-++.....+.. .+..+.-.....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 44333333222222 23333344445667788999999888865 46667777889999999999999999999865
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 334 KPDAITFLGVISSCRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
. +..+...+..++.. .+.+..|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.
T Consensus 161 ~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a----------- 227 (290)
T PF04733_consen 161 D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA----------- 227 (290)
T ss_dssp S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH-----------
T ss_pred C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------
Confidence 3 34456666666543 23689999999998754 5688899999999999999999999887653
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCH-HHHHHHHHHHHHC
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCW-DQAARVRKLMKDK 450 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~-~~A~~~~~~m~~~ 450 (519)
+..+|.++.+...++....-.|+. +.+.+.+.+++..
T Consensus 228 ----l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 ----LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ----CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ----HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 456677788888899988888888 6677888888764
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.79 E-value=4.9e-06 Score=78.31 Aligned_cols=210 Identities=11% Similarity=-0.033 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHhHCC-CCCC--HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRER-LKVD--ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
..+.++.-+..+.... ..|+ ...|......+...|+.+.|...|...++.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6677888888887543 2222 3456667777888899999999998888764 4467788888899999999999999
Q ss_pred HHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC
Q 044422 192 VFEEMPV--R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268 (519)
Q Consensus 192 ~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 268 (519)
.|++..+ | +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+....... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 8888753 3 45677888888888899999999998887753 433222222223445677888888886654332 2
Q ss_pred CcHHHHHHHHHHHHhcCCHHH--HHHHHHhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 269 SYIQVANSLISMYCKCGNVEE--AVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
++... ..+... ..|+... +.+.+..-.+. ...+|..+...+.+.|++++|...|++..+.
T Consensus 197 ~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33222 122222 2344332 22222221111 2346777777777777777777777777654
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=3.1e-05 Score=75.49 Aligned_cols=300 Identities=10% Similarity=0.011 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCC-CChHH-HHHHHHHHHHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGF-IANVY-VGSSLITLYSKCRVIIDAYKVFEEMPV--R-NVVSWTAIIAAF 211 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 211 (519)
.|..+...+...|+.+.+...+....+..- .++.. ........+...|++++|.+++++..+ | +...++. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444444455666665555554443321 12221 112223345567777777777776542 2 3333332 1122
Q ss_pred H----hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 212 A----QEWQVDMCLELYRMMRNSMLEPND-FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 212 ~----~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
. ..+..+.+.+.+.. ..+..|+. .....+...+...|++++|...++...+.. +.+...+..+...|...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2 23444445544443 11223332 344455567777888888888888887765 4556677778888888888
Q ss_pred HHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHccCCHHH
Q 044422 287 VEEAVYVFNNMHGK-----DI--VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPDAITF-L--GVISSCRHGGLVEE 355 (519)
Q Consensus 287 ~~~a~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~-~--~ll~~~~~~g~~~~ 355 (519)
+++|...++...+. +. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888776541 21 2345677778888999999998888754322 1111111 1 22333334443332
Q ss_pred HHHH--H-HHHHHcC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC---CHHHHHHHHHhhhcCCCCchhHHH
Q 044422 356 GKVY--F-DSMAKHG-LKPELDHYSCVVDLLGRAGLLEEARDFIKQMP--IYP---NAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 356 a~~~--~-~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p---~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+.+. + ....... .............++...|+.++|..+++.+. ... ....+ ........
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~~~l 312 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA-----------RDVGLPLA 312 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH-----------HhhhHHHH
Confidence 2222 1 1111110 01111222356777888999999999998772 111 11111 11234444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
...++...|++++|.+.+......+
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6777889999999999999877654
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1e-05 Score=73.56 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHH-------------------------------------------HHHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHGKDIVSW-------------------------------------------NSMIAGY 312 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------------~~li~~~ 312 (519)
.|+-.|.+.+++.+|..+.+++...++.-| .++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 445567788888888888887764333222 1233333
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (519)
.-..++++++..++....--.. |...--.+.++.+..|.+.+|.++|-.+....++-+..-...|.++|.+++..+-|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 3333444444444444333222 222222345666666777777777766654333323333344566777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 393 DFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
+++-++....+..+ ......+-|.+.+.+--|.+.|+.+......|
T Consensus 449 ~~~lk~~t~~e~fs----------------LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 449 DMMLKTNTPSERFS----------------LLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHhcCCchhHHH----------------HHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 77776642222221 22235677888888888888898887765433
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-05 Score=77.65 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=207.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++-+++++...+. .+++...+..=|.++...|+-.+-..+=..+++. .+-.+.+|-++..-|.-.|+..+|.+.|.
T Consensus 259 ~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 259 RFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred hHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 677777888887765 3556666666677888889888877777777765 36667889999888888999999999998
Q ss_pred cCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 195 EMPVR---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 195 ~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+...- =...|-.+...|.-.|..+.|+..+...-+. ++-...-+..+.--|.+.++.+-|.++|.+..... |.|+
T Consensus 337 Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dp 414 (611)
T KOG1173|consen 337 KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDP 414 (611)
T ss_pred HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcc
Confidence 87632 3468999999999999999999998776543 11122234446667888999999999999988764 6778
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGK----------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 341 (519)
.+.+-+.-.....+.+.+|...|+....+ -..+++.|..+|.+.+++++|+..+++..... +-|..|+.
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~a 493 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHA 493 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHH
Confidence 88888888888889999999999876521 33568889999999999999999999988764 44888999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
++.-.|...|+++.|...|.+..- +.|+..+...++..+.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 998899999999999999998876 6788877777776443
No 75
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.8e-08 Score=59.79 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=27.5
Q ss_pred hCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 164 TGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 164 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888774
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=1e-05 Score=69.47 Aligned_cols=190 Identities=11% Similarity=0.069 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
...|.-.|.+.|+...|..-+++..+.. +-+..++..+...|-+.|..+.|.+.|....+.. +-+..+.|...--+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666665543 2233455556666666666666666666665543 3445556666666666
Q ss_pred cCCHHHHHHHHHhcCC-C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 284 CGNVEEAVYVFNNMHG-K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 284 ~~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
.|++++|...|+.... | -..+|..+.-+..+.|+++.|...|++..+.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 6666666666665443 2 2345666666666666666666666666654322 22345555556666666666666
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
+++.....+- ++....-..|+.-.+.|+.+.+.++=..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666655443 5666555556666666666665554333
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=1.8e-06 Score=80.22 Aligned_cols=247 Identities=9% Similarity=0.009 Sum_probs=158.4
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
+.+--.|++..+..-.+ .....-..+.....-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 34445677777775444 22111112333455667788888988877766655556676666665555444345556665
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 044422 223 LYRMMRNSMLEPNDFTF-TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK- 300 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 300 (519)
-+++....+..++..++ ......+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+-
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55554444333233233 33335566789999888877542 45677778889999999999999999999863
Q ss_pred ChhHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 301 DIVSWNSMIAGYA----QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 301 ~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
+..+...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.+ +-+..+..
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 2233334444433 234689999999998664 66788889999999999999999999999987543 33566777
Q ss_pred HHHHHHHHcCCH-HHHHHHHHhC
Q 044422 377 CVVDLLGRAGLL-EEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~-~~A~~~~~~~ 398 (519)
.++-+....|+. +.+.+++.++
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHhCCChhHHHHHHHHH
Confidence 778877888877 6778888887
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.62 E-value=3.3e-05 Score=66.40 Aligned_cols=158 Identities=8% Similarity=-0.039 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhc
Q 044422 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 214 (519)
...+.-.|.+.|+...|..-++..++.. +-+..+|..+...|.+.|+.+.|.+.|++.. +.+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344455566666666666666666553 3334456666666666666666666665543 23445556666666666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
|++++|...|++......-| -..||..+.-+..+.|+.+.|...++...+.. +......-.+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666555432111 12355555555555566666666555555543 22233333444444444444444444
Q ss_pred HHhc
Q 044422 294 FNNM 297 (519)
Q Consensus 294 ~~~~ 297 (519)
++..
T Consensus 196 ~~~~ 199 (250)
T COG3063 196 LERY 199 (250)
T ss_pred HHHH
Confidence 4433
No 79
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=4.3e-06 Score=79.07 Aligned_cols=215 Identities=11% Similarity=0.029 Sum_probs=152.7
Q ss_pred hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHH
Q 044422 146 GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
.-.|+.-.+..-|+..++....++. .|--+..+|....+-++.+..|++.. +.++.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457788888888887776533222 25556667888888888888887765 3466777777777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K 300 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~ 300 (519)
-|++..... +-+...|..+.-+..+.+.+++++..|+..++. ++....+|+-....+...++++.|.+.|+...+ |
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 888877643 224566777777777888888888888888765 566778888888888888888888888886643 2
Q ss_pred C-------hh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 301 D-------IV--SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 301 ~-------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
. +. .--.++-.-. .+++..|..++++..+...+ ....|..|...-...|++++|.++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 11 1122222222 37888888888888775433 456788888888888899999998888764
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=8.9e-08 Score=56.79 Aligned_cols=32 Identities=41% Similarity=0.675 Sum_probs=19.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=0.00027 Score=68.80 Aligned_cols=253 Identities=9% Similarity=-0.035 Sum_probs=160.6
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCChHHHHHH---HHHHHHhCCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCCh
Q 044422 144 SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSS---LITLYSKCRVIIDAYKVFEEMPV--RN-VVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~ 217 (519)
.+...|+++.|..+++...+.. +.|...+.. ........+..+.+.+.++.... |+ ......+...+...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 4567899999999999988763 444444442 22222335666677777665332 22 23444566788999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHH
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF-FSYI--QVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
++|...+++..+.. +.+...+..+...+...|++++|...++......- .++. ..|..+...+...|++++|..++
T Consensus 131 ~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998865 44566788888999999999999999998877532 2332 34567888999999999999999
Q ss_pred HhcCCCCh--hHHH------HHHHHHHHcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 295 NNMHGKDI--VSWN------SMIAGYAQHGLAVRAIDL--FEEMMKQRV--KPDAITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 295 ~~~~~~~~--~~~~------~li~~~~~~g~~~~A~~~--~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
+....+.. .... .++.-+...|....+.+. +........ ............++...|+.+.|...++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 98763221 2111 222333344433332222 111111111 11112223456677889999999999999
Q ss_pred HHHcCCC------c--CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 363 MAKHGLK------P--ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 363 m~~~~~~------p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+...... . .....-...-++...|+.++|.+.+...
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753222 0 1112222233456889999999988765
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=2.1e-05 Score=69.92 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=150.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS-ILSACTG 248 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 248 (519)
+++.+..+.+..+++.|++++..-.+ ++......+..+|-...++..|-..++++... .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 44444445555666666665554432 24445555666666666666666666666443 343333321 2234445
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISM--YCKCGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
.+.+.+|..+...|... +....-..-+.+ .-..+++..+..++++... .+..+.+.......+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 56666666666555432 111111111111 1234566666666666653 44455555555556677777777777
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-------------cCH--------HHHHHHHHH--
Q 044422 326 EEMMKQ-RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-------------PEL--------DHYSCVVDL-- 381 (519)
Q Consensus 326 ~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~--------~~~~~li~~-- 381 (519)
+...+- |..| ...|+..+. +.+.|+.+.|++...++.+.|++ ||. -.-+.++.+
T Consensus 168 qaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 766653 4443 345655543 33456667777777766655432 111 112233333
Q ss_pred -----HHHcCCHHHHHHHHHhCC----CCCCHHHH----------------HHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 382 -----LGRAGLLEEARDFIKQMP----IYPNAVIW----------------EAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 382 -----~~~~g~~~~A~~~~~~~~----~~p~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
+.+.|+++.|.+-+-+|+ -..|.+|. ..+.-.+.++|--+.++..++-.||+..-
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHH
Confidence 457788888888888884 12233333 33444567788667899999999999999
Q ss_pred HHHHHHHHHH
Q 044422 437 WDQAARVRKL 446 (519)
Q Consensus 437 ~~~A~~~~~~ 446 (519)
++-|..++-+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 9999988765
No 83
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.5e-05 Score=65.93 Aligned_cols=249 Identities=11% Similarity=-0.015 Sum_probs=157.1
Q ss_pred HHHHHhCCCHHHHHHHHccCC-C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMP-V-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 254 (519)
++-+.-.|.+..++..-.... . .+...-..+-++|...|++.....- .+.. -.|....+..+-.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 344444666666665544433 2 3333444455667776765544332 2221 13334444333333333444333
Q ss_pred H-HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 255 G-RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 255 a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
- .++.+.+.......+......-...|++.+++++|.+...... +....-.=+..+.+..+++-|.+.+++|.+..
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 3 3445555555555555555566677888899999999888733 33333333445677888999999999998642
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 334 KPDAITFLGVISSCRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
+..|.+.|..++.+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..+++..
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea----------- 233 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA----------- 233 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH-----------
Confidence 66788878777754 34688899999998863 5688889998888889999999999887755
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHH-HHHHHHHHC
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAA-RVRKLMKDK 450 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~-~~~~~m~~~ 450 (519)
+..++.++.+...++..-...|+..++. +.+.+.+..
T Consensus 234 ----L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 234 ----LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred ----HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4455666777777777777777765544 355555443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.51 E-value=0.00054 Score=68.93 Aligned_cols=388 Identities=13% Similarity=0.045 Sum_probs=210.2
Q ss_pred hccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCC--C-CCchhhhhhhhhcCCcc
Q 044422 38 QISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTN--S-TFGSSNVFDQLLDTPVV 114 (519)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 114 (519)
.++..|++..+-+.|+.... ........|..+-..+...+. ...+..+...-.... + ......+.....-.+.+
T Consensus 332 al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 34467888888888888652 222233344443333333322 223333322222222 2 22222333334444444
Q ss_pred CHHHHHHHHHHHhH--CC----CCCCHHHHHHHHHHHhcC----C-------ChhhHHHHHHHHHHhC-CCChHHHHHHH
Q 044422 115 DVEKLISMHHDLHR--ER----LKVDASFLSTAVTSCGST----R-------NIRGGAPYQCLAIRTG-FIANVYVGSSL 176 (519)
Q Consensus 115 ~~~~A~~~~~~m~~--~g----~~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g-~~~~~~~~~~l 176 (519)
..+++++.-.+... .+ ++| ..|..+.-+|+.. . ...++.+.++...+.+ -.|+...|-++
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56666665555544 11 333 3333333333221 1 1335666777776654 23444444333
Q ss_pred HHHHHhCCCHHHHHHHHccCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCC
Q 044422 177 ITLYSKCRVIIDAYKVFEEMP----VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~ 251 (519)
-|+..++++.|.+...+.. ..++..|..+.-.+...+++.+|+.+.+..... |. |..-...-++.-...++
T Consensus 487 --q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 487 --QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFND 562 (799)
T ss_pred --HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhccc
Confidence 4666788888887776654 457788888888888888999988888766543 21 11111111111112333
Q ss_pred chHHHHHHHHHHH---------------------cCC-------CCcHHHHHHHHHHHHhcC---CHHHHHHHHHhcCCC
Q 044422 252 LGQGRSAHCQTIR---------------------MGF-------FSYIQVANSLISMYCKCG---NVEEAVYVFNNMHGK 300 (519)
Q Consensus 252 ~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 300 (519)
.+++......+.. .|. .....++..+.......+ ..+..+..+.....|
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 3333322221111 010 011122222222111100 011111111111112
Q ss_pred C------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHH
Q 044422 301 D------IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELD 373 (519)
Q Consensus 301 ~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~ 373 (519)
+ ...|......+.+.+..++|...+.+..+.- +-....|......+...|..++|.+.|..... +.| ++.
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~ 719 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVP 719 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcH
Confidence 2 2345566677788888888888887776542 33444555555667778888899988888876 345 455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
...++...+.+.|+..-|.. -..+..+++++|.|+.+|..|...+.+.|+.+.|.+.|....+.
T Consensus 720 s~~Ala~~lle~G~~~la~~-------------~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEK-------------RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhCCcchHHH-------------HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 67888888888886555544 11234557899999999999999999999999999999987654
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00014 Score=74.82 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
+.+|+.+..+-.+.|.+.+|++-|-+. .|+..|-.++....+.|.+++-.+.+...++..-.|... +.||-+|++.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 456777777777777777777766443 455677777788888888888777776666665556554 3577777777
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+++.+.++++ ..|+......+.+-|...+.++.|.-+|. ++.-|..+...+...|++..|.+.-++..
T Consensus 1180 ~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1180 NRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred chHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7777665554 24666666677777777777777777776 55667888888888888888877655532
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 330 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..||-.+-.+|...+.+.-| +|...++.....-..-++..|-..|-+++...+++..
T Consensus 1248 ------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1248 ------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred ------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 556888888888877766543 3344444455566777888888888888888888754
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.43 E-value=0.00033 Score=68.97 Aligned_cols=314 Identities=13% Similarity=0.121 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRT-GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 214 (519)
..|..-+......|++......|+..+.. .+.....+|...+...-..|-++-+.+++++..+-++..-+-.|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34445555555666666666666666543 12233345666666556666666666666666655555566666666666
Q ss_pred CChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCch---HHHHHHHHHHHcCCCCc--HHHHHHHHHHHHh
Q 044422 215 WQVDMCLELYRMMRNSM------LEPNDFTFTSILSACTGSGALG---QGRSAHCQTIRMGFFSY--IQVANSLISMYCK 283 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 283 (519)
+++++|-+.+....... .+.+...|..+....++.-+.- .+..++..+... -+| ...|.+|.+.|.+
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 66666666665543221 1223333333333333322211 112222222111 122 2345555555555
Q ss_pred cCCHHHHHHHHHhcCCC---------------------------------------------------------------
Q 044422 284 CGNVEEAVYVFNNMHGK--------------------------------------------------------------- 300 (519)
Q Consensus 284 ~~~~~~a~~~~~~~~~~--------------------------------------------------------------- 300 (519)
.|.+++|.++|++....
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 55555555555443210
Q ss_pred -------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 044422 301 -------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD------AITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367 (519)
Q Consensus 301 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 367 (519)
++..|..-+. +..|+..+-...|.+..+. +.|- ...|..+.+-|-..|+++.|..+|++..+-.
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 1111111111 1234455555566555543 2221 2346666677777888888888888877643
Q ss_pred CCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH---HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 368 LKPE---LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAV---IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 368 ~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
.+-- ..+|..-...=.+..+++.|+++.++...-|... -|...+.+-..--.+...|..++..--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 3221 2345555555566777888888887763333221 110000000000022335555555556666777777
Q ss_pred HHHHHHHHCCCCC
Q 044422 442 RVRKLMKDKGLKT 454 (519)
Q Consensus 442 ~~~~~m~~~g~~~ 454 (519)
.+++++.+..+..
T Consensus 498 ~vYdriidLriaT 510 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777766543
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.40 E-value=0.00075 Score=74.63 Aligned_cols=303 Identities=9% Similarity=-0.047 Sum_probs=186.2
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCC------CCh--HHHHHHHHHHHHhCCCHHHHHHHHccCCC----CCh----hH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGF------IAN--VYVGSSLITLYSKCRVIIDAYKVFEEMPV----RNV----VS 203 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~----~~ 203 (519)
.....+...|+++++...+....+.-- .+. ......+...+...|+++.|...+++... .+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 334445567888888888877654310 111 11222333455678999999888876532 221 24
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCC--C-cH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNS----ML-EPNDFTFTSILSACTGSGALGQGRSAHCQTIRM----GFF--S-YI 271 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~ 271 (519)
.+.+...+...|++++|...+.+.... |- .+...++..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 456666778899999999988877542 21 111234556667788899999998888776542 221 1 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--H
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHG------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--VKPDAI--T 339 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~--t 339 (519)
..+..+...+...|++++|...+.+... + ....+..+...+...|+.++|...++...... ...... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 3455566677778999999888876532 1 12344445667788899999999888775421 111110 1
Q ss_pred H--HHHHHHHHccCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 340 F--LGVISSCRHGGLVEEGKVYFDSMAKHGLKPE---LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 340 ~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
. ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.--. -+..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~---------~~~~ 724 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN---------ARSL 724 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHh
Confidence 0 1112334557888888888777553211111 112345677788899999999888876100 0000
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
........++..+..++.+.|+.++|...+.+..+..
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 0011122356668899999999999999999988765
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.31 E-value=0.0047 Score=61.17 Aligned_cols=111 Identities=8% Similarity=0.038 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCCHH--
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG------FIANVYVGSSLITLYSKCRVII-- 187 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~-- 187 (519)
++.++.++++..+- ++..-+--+..++..+++++|.+.+...+... -+.+-..|.-+-+..++.-+.-
T Consensus 154 Pets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 35555555555432 33334455555566666666666655554221 1223334444444433332211
Q ss_pred -HHHHHHccCCC--CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 188 -DAYKVFEEMPV--RN--VVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 188 -~A~~~~~~m~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
....+++.+.. +| ...|+.|.+-|.+.|.+++|.++|++..+.
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 12223333321 12 235788888888888888888888776654
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.31 E-value=0.0014 Score=59.78 Aligned_cols=288 Identities=12% Similarity=0.064 Sum_probs=159.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHH---HHHHHhcCC
Q 044422 141 AVTSCGSTRNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAI---IAAFAQEWQ 216 (519)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~~~ 216 (519)
+-+.+.-.|.+..|+.-|...++. .|+.+ ++-.-...|...|+-..|+.-|+...+..+..+.+- ...+.++|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 333444445555555555554432 22221 122222344445555555555544443222222222 234556666
Q ss_pred hHHHHHHHHHHHHCCCCC------------CH--HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSMLEP------------ND--FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p------------~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
++.|..-|+...+....- -. ......+..+...|+...|..+...+.+.. +-+...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 666666666665542110 00 112223344556777778888887777764 556777777778888
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------H------HH
Q 044422 283 KCGNVEEAVYVFNNMH---GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV-------I------SS 346 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-------l------~~ 346 (519)
..|++..|+.-++... ..+..++--+-..+...|+.+.++...++..+ +.||....-.. . ..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776555443 34566666666667777777777777777665 34554321111 1 11
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPE-----LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
....+++-.+..-.+...+.. |. ...+..+-.++...|++.+|.+...+. +..+|++.
T Consensus 279 ~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev---------------L~~d~~dv 341 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV---------------LDIDPDDV 341 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHH---------------HhcCchHH
Confidence 223345555555555555432 33 223444556666677888887766544 45555666
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++..-..+|.....|++|+.-|+...+-
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 66666778888888888888887776554
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=3e-05 Score=75.21 Aligned_cols=222 Identities=10% Similarity=0.051 Sum_probs=165.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 044422 209 AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVE 288 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 288 (519)
.-+.+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+..+.. +-+..+..+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888999999998887765 3467788889899999999999999998888875 567888888888999999888
Q ss_pred HHHHHHHhcCCCC-hhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 289 EAVYVFNNMHGKD-IVSWNSMI---------AGYAQHGLAVRAIDLFEEMM-KQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 289 ~a~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
.|...++.-.... ...|...- ..+.....+....++|-++. +.+.++|......|--.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8988887653210 00000000 12222223445556665554 4454566667777777788899999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 358 VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
..|+..+... +-|..+||.|.-.++...+.++|...|.+ ++++.|.-.++...|...|...|.|
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r---------------ALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNR---------------ALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHH---------------HHhcCCCeeeeehhhhhhhhhhhhH
Confidence 9999998743 33677899999999999999999987664 4677777778888899999999999
Q ss_pred HHHHHHHHHHH
Q 044422 438 DQAARVRKLMK 448 (519)
Q Consensus 438 ~~A~~~~~~m~ 448 (519)
++|.+.|=...
T Consensus 515 kEA~~hlL~AL 525 (579)
T KOG1125|consen 515 KEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHH
Confidence 99999877644
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0046 Score=60.63 Aligned_cols=393 Identities=11% Similarity=0.064 Sum_probs=204.8
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCH
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDV 116 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (519)
....+.+++++|....+.+.. ..+.+...+..-+.+.+..+.. +.+=.+...-... .......+-.++..-..+..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky-~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKY-EDALKLIKKNGAL-LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHH-HHHHHHHHhcchh-hhcchhhHHHHHHHHHcccH
Confidence 345588999999999999873 3355555555555555555422 1111111111100 11111112344444445577
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA-NVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
++|+..++-..+. |..+...-...|.+.+++++|..+|+.+.+.+.+- +...-..++.+-.. -.+. +.+.
T Consensus 96 Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQS 166 (652)
T ss_pred HHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHh
Confidence 8888888733321 33455555667788899999999999987765331 22222222221111 1111 3333
Q ss_pred CCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHccCCchHHHHH
Q 044422 196 MPVRNVVSWTAI---IAAFAQEWQVDMCLELYRMMRNSM-------------LEPNDF-TFTSILSACTGSGALGQGRSA 258 (519)
Q Consensus 196 m~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-t~~~ll~~~~~~g~~~~a~~~ 258 (519)
.+.....+|..+ ...+...|++..|+++++...+.+ +.-... .-..|.-++-..|+-++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 333223344333 334556777888888777762211 111111 122344455667778888887
Q ss_pred HHHHHHcCCCCcH----HHHHHHHHHHHhc---------------------------------------------CCHHH
Q 044422 259 HCQTIRMGFFSYI----QVANSLISMYCKC---------------------------------------------GNVEE 289 (519)
Q Consensus 259 ~~~~~~~~~~~~~----~~~~~li~~~~~~---------------------------------------------~~~~~ 289 (519)
+....+... +|. ..-|.|+..-... +..+.
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777776642 222 1122222111111 11112
Q ss_pred HHHHHHhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-----
Q 044422 290 AVYVFNNMHGKD-IVSWNSMIAGYA--QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD----- 361 (519)
Q Consensus 290 a~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~----- 361 (519)
+.++-....... ...+.+++..+. +...+.++.+++....+....-........++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 222222111111 123333333322 223466677777766554322223455566677888999999999998
Q ss_pred ---HHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-------HHHH-----------HHHHH
Q 044422 362 ---SMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPN-------AVIW-----------EAAES 412 (519)
Q Consensus 362 ---~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-------~~~~-----------~~~~~ 412 (519)
.+.+.+..|.. ...++..+.+.++.+-|..++... ...+. ...+ ..+++
T Consensus 406 ~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 55555555544 445666677766655555554433 11111 1111 55677
Q ss_pred hhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 413 RLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 413 ~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
.++.+|.+..+...|+.+|++. +.+.|..+-+.
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7888888888998899888887 46666665444
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=7e-05 Score=68.20 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---HH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG--KD-IV---SW 305 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~---~~ 305 (519)
....+..+...+...|+++.|...++.+.... +.+ ...+..+..+|.+.|++++|...++.+.+ |+ .. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666666666666666666665542 111 13445556666666666666666666543 21 11 23
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 306 NSMIAGYAQH--------GLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 306 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
..+..++.+. |+.++|.+.++.+.+. .|+.. ....+... +.... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HHH--------HHHH
Confidence 3333334333 4555566666655543 22221 11111100 00000 000 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.+...|.+.|++.+|...++.. ...|+ .|..+.++..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD-------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566788899999999988866 11121 23334577789999999999999999999887653
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.28 E-value=0.0057 Score=60.65 Aligned_cols=329 Identities=13% Similarity=0.087 Sum_probs=188.7
Q ss_pred CchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 99 FGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
...+.++..+.+.. .++++|+..|.....-+ +-|...+--+--.-++.|+++..........+.. +-....|..+..
T Consensus 75 ~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSD-KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred chhHHHHHHHHhhh-hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 33456665555544 38899999998887654 3355555544444457778887777777776652 334456778888
Q ss_pred HHHhCCCHHHHHHHHccCC-----CCChhHHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 044422 179 LYSKCRVIIDAYKVFEEMP-----VRNVVSWTAI------IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF-TSILSAC 246 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~l------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~ 246 (519)
++.-.|+...|..+++... .++...|.-. .....+.|..+.|++.+..-... ..|...+ .+-...+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHH
Confidence 8888888888888887765 2444444332 23455677788888777555332 2233333 3344566
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhcCCC-------------------------
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN-VEEAVYVFNNMHGK------------------------- 300 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~------------------------- 300 (519)
.+.+++++|..++..+.... +.+...|..+..++.+--+ .+....+|....+.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence 78889999999998888874 3344444455555543333 33333555554320
Q ss_pred ----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC----------CCCHH--HHHHHHHHHHccCCHH
Q 044422 301 ----------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK----QRV----------KPDAI--TFLGVISSCRHGGLVE 354 (519)
Q Consensus 301 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~----------~p~~~--t~~~ll~~~~~~g~~~ 354 (519)
-+.++..+.+.|-.-...+-..++.-.+.. .|. +|... |+-.++..+-+.|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 011222222222211111111111111111 110 33333 3344566677778888
Q ss_pred HHHHHHHHHHHcCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKPEL-DHYSCVVDLLGRAGLLEEARDFIKQMP--IYPNAVIWEAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
.|...++...++ .|+. ..|..=.+.+...|.+++|..++++.. -.||...- .--+.-.
T Consensus 389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN-----------------sKcAKYm 449 (700)
T KOG1156|consen 389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN-----------------SKCAKYM 449 (700)
T ss_pred HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH-----------------HHHHHHH
Confidence 888887777664 3543 344455567777788888887777662 12333322 1235566
Q ss_pred hccCCHHHHHHHHHHHHHCCC
Q 044422 432 AGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.++.+.++|.++.....+.|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 778888888888888877774
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0013 Score=58.76 Aligned_cols=323 Identities=11% Similarity=0.042 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHH-HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH--HHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLST-AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT--LYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~ 191 (519)
++..|-+.++.+... .|...-|-. -...+-+.+.+..|..+...|... ++...-..-+. .....+++..+..
T Consensus 59 ~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 59 EFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred HHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHH
Confidence 666677777776553 333333321 122334556667777776655432 22221111111 2234677777888
Q ss_pred HHccCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-
Q 044422 192 VFEEMP-VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF- 268 (519)
Q Consensus 192 ~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 268 (519)
+.++.+ +.+..+.+.......+.|+++.|++-|+...+. |..| ...|+..+ ++.+.|+.+.|.+...++.+.|+.
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 888877 466667777777777888999999988887764 4444 45665544 455678888888888888877642
Q ss_pred ------------CcH---------------HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcC
Q 044422 269 ------------SYI---------------QVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVSWNSMIAGYAQHG 316 (519)
Q Consensus 269 ------------~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g 316 (519)
||+ ..+|.-.-.+.+.++++.|.+.+-+|.. -|++|...+.-.- ..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccC
Confidence 111 1222223335677899999999999974 3677766554322 234
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHH-cCCHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-PELDHYSCVVDLLGR-AGLLEEARDF 394 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~ 394 (519)
++.+..+-+.-+.+... ....||..++-.||+..-++.|..++.+-...-.. .+...|+ |++++.. .-..++|++-
T Consensus 291 ~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKK 368 (459)
T ss_pred CccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHH
Confidence 55555555555555543 34568888888999999999998887654332111 2344444 4454443 3355666554
Q ss_pred HHhCC------------------CCCCHHHHHHHHHhhhcCCCCc----hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 395 IKQMP------------------IYPNAVIWEAAESRLLLEPECA----ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 395 ~~~~~------------------~~p~~~~~~~~~~~~~~~~~~~----~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++.+. -..|. ..+.++++--.+.. .+...-.+.|.+..++..+.++|+.-.+.
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd---~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDD---EAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 44330 00111 11111111111111 13334466788889999999999876654
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00024 Score=75.71 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=157.9
Q ss_pred CC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc-CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHH
Q 044422 234 PN-DFTFTSILSACTGSGALGQGRSAHCQTIRM-GFFS---YIQVANSLISMYCKCGNVEEAVYVFNNMHGK-D-IVSWN 306 (519)
Q Consensus 234 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 306 (519)
|| +..|-.-|......++.++|+++.+++... ++.- -..+|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44 456777778888889999999988887653 2221 2346777777777777788888999888763 3 35688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE---LDHYSCVVDLLG 383 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~ 383 (519)
.|...|.+.+++++|.++++.|.+. +.-....|...++.+.+..+-+.|..++++..+. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999875 3345667888889999999999999999998874 343 334455666667
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
+.|+.+++..+|+.. +...|.....|+.++..-.++|+.+.+..+|++....++.|..
T Consensus 1612 k~GDaeRGRtlfEgl---------------l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGL---------------LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hcCCchhhHHHHHHH---------------HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 889999988888865 3445666677888899999999999999999999999886654
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=0.00018 Score=63.11 Aligned_cols=150 Identities=10% Similarity=0.104 Sum_probs=109.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 356 (519)
-+-.|...|+++.+..-.+.+..+. . .+...++.+++...++...+.. +.|...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777654443332221 0 1123566777777777776653 44777888888899999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHH-HHcCC--HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 357 KVYFDSMAKHGLKPELDHYSCVVDLL-GRAGL--LEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
...+++..+.. +-+...+..+..++ ...|+ .++|.+++++. ++.+|.++.++..|...+..
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a---------------l~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKA---------------LALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---------------HHhCCCChhHHHHHHHHHHH
Confidence 99999988854 33667777777764 66676 47888777644 67788888899999999999
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 044422 434 VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 434 ~g~~~~A~~~~~~m~~~g 451 (519)
.|++++|+..++++.+..
T Consensus 157 ~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 157 QADYAQAIELWQKVLDLN 174 (198)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999998765
No 97
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.0009 Score=63.19 Aligned_cols=223 Identities=10% Similarity=0.007 Sum_probs=128.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPND-FTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
..+-..+...+..++|+.+..++.+. .|+. ..|+.--.++...| +++++...++.+.+.. +-+..+|+.-...+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33334455556677777777766654 3333 34444444444555 4567777777666654 334445554444444
Q ss_pred hcCC--HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CC--
Q 044422 283 KCGN--VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG---GL-- 352 (519)
Q Consensus 283 ~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~-- 352 (519)
+.|+ .+++..+++.+.+ .|..+|+...-++...|+++++++.++++.+.+.. |...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 4454 2556666666554 35667777777777778888888888888776544 444555544444333 22
Q ss_pred --HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC----CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 353 --VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG----LLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 353 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
.+....+..++.... +-+...|+.+...+...+ +..+|.+++.+ ++...|.++.++..
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~---------------~~~~~~~s~~al~~ 260 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE---------------VLSKDSNHVFALSD 260 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH---------------hhcccCCcHHHHHH
Confidence 235556665655532 335566766666665522 23334444433 23455666677777
Q ss_pred HHHHHhccC------------------CHHHHHHHHHHH
Q 044422 427 LANLYAGVR------------------CWDQAARVRKLM 447 (519)
Q Consensus 427 L~~~~~~~g------------------~~~~A~~~~~~m 447 (519)
|+..|+... ..++|.++++.+
T Consensus 261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 888887532 346788888887
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00059 Score=72.90 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=158.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
+-+...|-..|......+++++|.+++++... .-.-.|.++++.-...|.-+...++|++..+.. . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 33455788888888888899998888888752 234467788877777788888888888887742 1 1345
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K---DIVSWNSMIAGYA 313 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~ 313 (519)
|..|...|.+.+..++|.++++.|.+.- .-...+|...+..+.+.++-++|.+++.+..+ | .+....-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 7788888888999999999998887752 35677888888888888888888888887654 2 2333444445556
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHHcCCHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL--DHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A 391 (519)
+.|+.+.+..+|+.....-.+ -...|+..++.-.+.|+.+.+..+|++....++.|.. ..|...+..=-..|+-..+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 788888888888887765322 4556888888888888888888888888887776643 3344445444455554433
No 99
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0011 Score=58.36 Aligned_cols=247 Identities=11% Similarity=0.065 Sum_probs=152.3
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHH-
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC- 220 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a- 220 (519)
++-+--.|++..+...-....... -+...---+-++|...|.+.....-...-..+.....-.+...+..-++.+.-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHH
Confidence 344455677776665554433221 22222223345566666654433322222222333333333333333443333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK 300 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 300 (519)
-.+.+.+.......+......-...|++.|++++|.+..... -+......=+..+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555555544445444455566789999999999887652 12333333445677888899999999999984
Q ss_pred -ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 044422 301 -DIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 301 -~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++..... .-++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 45667767666654 45689999999999764 68899999999999999999999999999998654 3356666
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHhC
Q 044422 376 SCVVDLLGRAGLL-EEARDFIKQM 398 (519)
Q Consensus 376 ~~li~~~~~~g~~-~~A~~~~~~~ 398 (519)
..++-+-...|.. +-..+.+.++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Confidence 5565555555544 3334445544
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00013 Score=72.85 Aligned_cols=228 Identities=9% Similarity=-0.011 Sum_probs=164.1
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCChhHHHHHHHHHHhcCC
Q 044422 139 STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNVVSWTAIIAAFAQEWQ 216 (519)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~ 216 (519)
..+...+...|-...|..+++.+ ..|..+|.+|...|+..+|..+..+-. +||+..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34455555667777777777654 356778888888998888887776554 5778888888888888788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.. +....+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88888888765332 11112222334788888888888777765 55677888888889999999999999987
Q ss_pred cCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCcCH
Q 044422 297 MHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-LKPEL 372 (519)
Q Consensus 297 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~ 372 (519)
... | +...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+-...+.|.++.|.+.+.++.+.. ..-|.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 764 4 4578999999999999999999999999887733 44556666666788899999999998887421 11244
Q ss_pred HHHHHHHHHHHH
Q 044422 373 DHYSCVVDLLGR 384 (519)
Q Consensus 373 ~~~~~li~~~~~ 384 (519)
.+...++....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 555555554443
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=0.00058 Score=72.03 Aligned_cols=168 Identities=9% Similarity=0.045 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV-YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFA 212 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 212 (519)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+.+..+ .++..+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 4557788888888899999999998866654 3333 3333333366666665554433 4455555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 213 QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 213 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
...++.-+..+.+.|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... ++++|.+
T Consensus 95 ~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 5566655555666666533 344577788888888888899988888888887 66788888888888888 8888888
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 293 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
++.+.. ..|...+++..+.++|.++...
T Consensus 171 m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 171 YLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 877543 2366666777777777777664
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0045 Score=60.02 Aligned_cols=316 Identities=13% Similarity=0.078 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
+++.|+.+|-+...... +|...|..-..+++..|+++.|.+=-..-.+ +.|+ ..-|+....++.-.|++++|+.-|
T Consensus 17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 78888888888776643 3777777777788888888777664444333 3444 346777777777788888888777
Q ss_pred ccCCC---CChhHHHHHHHHHHhc---------------------------------------------------CChHH
Q 044422 194 EEMPV---RNVVSWTAIIAAFAQE---------------------------------------------------WQVDM 219 (519)
Q Consensus 194 ~~m~~---~~~~~~~~li~~~~~~---------------------------------------------------~~~~~ 219 (519)
.+-.+ .+...++-+..++... .....
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 76542 2223333333333110 00001
Q ss_pred HHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 220 CLELYRMM-----RNSM-------LEP------------N----------DFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 220 a~~~~~~m-----~~~g-------~~p------------~----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+.-.+... ...| ..| | ..-...+.++..+..+++.+.+-+....+.
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 11110000 0000 011 0 011233344444455555555555555554
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHH-------HHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD---IVSWNS-------MIAGYAQHGLAVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (519)
. -++.-++..-.+|...|.+..+...-....+.+ ..-|+. +..+|.+.++++.+...|.+.......|
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~ 331 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP 331 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH
Confidence 3 344445555566666666665555444433211 112222 3335556677777777777765544444
Q ss_pred CHHHHH-------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 336 DAITFL-------------------------GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 336 ~~~t~~-------------------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
|..+=. .=...+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHH
Confidence 432100 01223445677777777777777654 4456667777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|..= .+..++++|.....|..=+.++....+|++|.+.|++-.+..
T Consensus 411 aL~D---------------a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 411 ALKD---------------AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHH---------------HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7653 345667788888888888888888899999999998866543
No 103
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=4.2e-06 Score=50.29 Aligned_cols=33 Identities=33% Similarity=0.781 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD 336 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 336 (519)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00051 Score=68.74 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=172.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
+|--..-..+...+...|-..+|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||...|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445566778888999999999999965 5688899999999999999998877766 378889998888888
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-..-.+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 8777788888887765432 112222223446889999999986554 245788888888899999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 324 LFEEMMKQRVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 324 ~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.|..-... .|| ...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988763 454 5689999999999999999999999999887 556677888888899999999999999887
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.15 E-value=0.00012 Score=60.60 Aligned_cols=96 Identities=10% Similarity=-0.083 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
++..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 33344455666777788888888887777653 2356667777777777888888888888877643 346667777777
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 044422 381 LLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~ 398 (519)
++.+.|+.++|...|+..
T Consensus 101 ~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 778888888888777654
No 106
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.3e-06 Score=50.23 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN 235 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 235 (519)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.15 E-value=0.0061 Score=55.80 Aligned_cols=329 Identities=7% Similarity=0.008 Sum_probs=225.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHH---HHHhcCCChhhHHHHHHHHHHhCCCChHHHH-HHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAV---TSCGSTRNIRGGAPYQCLAIRTGFIANVYVG-SSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~ 190 (519)
.+..|+..|...++- |+..|..+. ..|...|+-..|..-+...++. +||-..- -.-...+.+.|.++.|.
T Consensus 53 Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred hHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHH
Confidence 778888888888764 555555554 3466678888888888887764 6765432 22345678999999999
Q ss_pred HHHccCCCCCh----------------h--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 044422 191 KVFEEMPVRNV----------------V--SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 191 ~~~~~m~~~~~----------------~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
.-|+.+.+.++ . .....+..+...|+...|+.....+.+.. +.|...|..-..+|...|.+
T Consensus 127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcH
Confidence 99998863221 1 12234556677899999999999998864 56888898899999999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh------HHHHH---------HHHHHHcCC
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIV------SWNSM---------IAGYAQHGL 317 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l---------i~~~~~~g~ 317 (519)
..|..=+....+.. ..+...+--+-..+...|+.+.++...++..+-|+. .|..+ +......++
T Consensus 206 k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~ 284 (504)
T KOG0624|consen 206 KKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH 284 (504)
T ss_pred HHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99988887777665 445566666677888899999999999888763331 22211 233456788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAIT---FLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 393 (519)
+-++++..+...+........+ +..+-.++...|.+.+|.+.-.+.++ +.|+ ..++.--..+|.-...+++|..
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8888888888777643322333 44455566778899999999999887 4565 7788888889998899999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHhhhcCCC--CchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 394 FIKQM-PIYP-NAVIWEAAESRLLLEPE--CAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 394 ~~~~~-~~~p-~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
=|+.. ...+ |...-.-++++-.+... ....|- |-+--+.-.-.+-.+.|++|-. .+.||.
T Consensus 363 dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYK--ILGVkRnAsKqEI~KAYRKlAq-kWHPDN 426 (504)
T KOG0624|consen 363 DYEKALELNESNTRAREGLERAKRLKKQSGKRDYYK--ILGVKRNASKQEITKAYRKLAQ-KWHPDN 426 (504)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHH--HhhhcccccHHHHHHHHHHHHH-hcCCcc
Confidence 99877 3333 33333334444333322 123343 3334455556677788888754 467776
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.00026 Score=70.52 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=82.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHGKDIV--SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
+.+......+.+|+.+++.++..++. -|..+..-|...|+++.|.++|-+. + .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHH
Confidence 44555667788888888877765443 4677778888999999999888764 2 24556778889999998
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 404 (519)
|.++-.+.. |-..+...|-.-..-+-+.|++.+|+++|-.++ .|+.
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~ 855 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK 855 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH
Confidence 888766543 334455666666667778888888888887775 4554
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.13 E-value=0.0054 Score=67.87 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=185.1
Q ss_pred cCHHHHHHHHHHHhHCCC------CCCH--HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh----HHHHHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERL------KVDA--SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN----VYVGSSLITLYS 181 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~------~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~ 181 (519)
+++++|...+......-- .+.. .....+-..+...|+++.|...++...+.--..+ ....+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 478888888877654210 1111 1122223345678999999999998876311112 134566667778
Q ss_pred hCCCHHHHHHHHccCCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHH
Q 044422 182 KCRVIIDAYKVFEEMPV-------RN--VVSWTAIIAAFAQEWQVDMCLELYRMMRN----SMLE--P-NDFTFTSILSA 245 (519)
Q Consensus 182 ~~g~~~~A~~~~~~m~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~ 245 (519)
..|++++|...+++... +. ..+++.+...+...|++++|...+++... .+.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 89999999998887651 11 23456667788899999999999887654 2221 1 23344555666
Q ss_pred HHccCCchHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-hhHH-----HHHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRM----GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KD-IVSW-----NSMIAG 311 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~-----~~li~~ 311 (519)
+...|++++|...+...... +.......+..+...+...|+.+.|.+.+..... .. ...+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77789999999988877553 2111234555667788899999999988877632 11 1111 112244
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcC-HHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAK----HGLKPE-LDHYSCVVDLLG 383 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~ 383 (519)
+...|+.+.|...+............ .....+..++...|+.++|...++.... .|..++ ..+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 55688999999988775432211111 1134566678889999999999998874 233332 345666778889
Q ss_pred HcCCHHHHHHHHHhC
Q 044422 384 RAGLLEEARDFIKQM 398 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~ 398 (519)
+.|+.++|...+.+.
T Consensus 743 ~~G~~~~A~~~L~~A 757 (903)
T PRK04841 743 QQGRKSEAQRVLLEA 757 (903)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999988876
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00029 Score=61.79 Aligned_cols=115 Identities=9% Similarity=0.086 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCC--HHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM-YCKCGN--VEEAV 291 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~ 291 (519)
++.+++...+++..+.. +.|...|..+...|...|++++|...++...+.. +.+..++..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444432 3344555555555555555555555555555543 3344444444443 234444 35555
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 292 YVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 292 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
+++++..+ .+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555443 13445555555555666666666666665554
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.13 E-value=0.0077 Score=59.80 Aligned_cols=325 Identities=14% Similarity=0.110 Sum_probs=205.2
Q ss_pred hhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 044422 105 FDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR 184 (519)
Q Consensus 105 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (519)
..++.-...++-++|.+....-.+..++ +.+.|..+.-.+....++++|...|..++..+ +-|...+.-+--.-++.|
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMR 123 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH
Confidence 3444445566888888887776664433 66778877777777889999999999988765 456677776666667777
Q ss_pred CHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHH------HHHccCCchH
Q 044422 185 VIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPNDFTFTSILS------ACTGSGALGQ 254 (519)
Q Consensus 185 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~ 254 (519)
+++.......... ......|..+..++.-.|+...|..+++...+.. -.|+...|..... .....|..++
T Consensus 124 d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 7777666655554 3456688888999999999999999999997764 2466666544333 3456777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHH-HHHHHHcCChHHHH-HHH-----
Q 044422 255 GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSM-IAGYAQHGLAVRAI-DLF----- 325 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~----- 325 (519)
|.+.+..-... +......-.+-...+.+.+++++|..+|..+.. ||-..|+.. ..++.+-.+.-++. .+|
T Consensus 204 ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 204 ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 77766554432 223334445667788899999999999998876 444444433 33333222222222 333
Q ss_pred -----------------------------HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCC------
Q 044422 326 -----------------------------EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK--HGL------ 368 (519)
Q Consensus 326 -----------------------------~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~--~~~------ 368 (519)
..+.+.|+++ +|..+..-|-.....+-..++...+.. .|-
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 3333444433 223333222222222211122222211 111
Q ss_pred ------CcCHHHHH--HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 369 ------KPELDHYS--CVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 369 ------~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+|++..|+ .++..+-+.|+++.|..+++.. .-.|+. +..|..-.+++...|.+++
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl----------------iEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL----------------IELYLVKARIFKHAGLLDE 423 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH----------------HHHHHHHHHHHHhcCChHH
Confidence 45555444 4777888889999999888865 323332 2345555799999999999
Q ss_pred HHHHHHHHHHCC
Q 044422 440 AARVRKLMKDKG 451 (519)
Q Consensus 440 A~~~~~~m~~~g 451 (519)
|..++++..+..
T Consensus 424 Aa~~l~ea~elD 435 (700)
T KOG1156|consen 424 AAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHhcc
Confidence 999999987665
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00034 Score=68.12 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHH
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
+.+.|++..|.-.|+..++.. +-+...|-.|.......++-..|+..+.+..+ .|..+.-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888887764 45677888888888888888888888877664 34556666667788888888888
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCchHHHHHHH-HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 222 ELYRMMRNSMLE--------PNDFTFTSILSACTGSGALGQGRSAHC-QTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 222 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
++|++-.....+ ++...-.. ........+....++|- .....+..+|..++..|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543210 00000000 11111122233344443 33445555777788888888888888888888
Q ss_pred HHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH--
Q 044422 293 VFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAK-- 365 (519)
Q Consensus 293 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-- 365 (519)
.|+.... | |...||.|...++...+..+|+..|.+..+- +|. ..-|| |.-+|...|.+++|...|-..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8887653 3 6678888888888888888888888888764 554 23344 44467888888888877766542
Q ss_pred -c------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 366 -H------GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 366 -~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
. +..++...|..|=.++.-.++.|-+.+....+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~~~ 568 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAPSR 568 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcccc
Confidence 1 11223456777766777777776565554433
No 113
>PLN02789 farnesyltranstransferase
Probab=98.11 E-value=0.0025 Score=60.28 Aligned_cols=201 Identities=9% Similarity=-0.006 Sum_probs=113.7
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh--H
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQV--D 218 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~--~ 218 (519)
+...+..++|..+...+++.. +-+..+|+..-.++...| ++++++..++++.. .+..+|+...-.+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 334556677777777777653 223345665555566666 56777777777652 3444566554444455542 5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CC----HHHHH
Q 044422 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC---GN----VEEAV 291 (519)
Q Consensus 219 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~ 291 (519)
+++.+++++.+.. +-|..+|+...-++...|+++++.+.++.+.+.+ +.+...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777777654 3356677777777777777888888887777765 34445555544444333 11 13344
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 292 YVFNNMHG---KDIVSWNSMIAGYAQH----GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 292 ~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (519)
.+..+... .|..+|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 44433322 2556666666666552 23344666666554432 2244455555555553
No 114
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6e-06 Score=49.24 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 234 (519)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.004 Score=59.86 Aligned_cols=179 Identities=12% Similarity=0.016 Sum_probs=124.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044422 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISS 346 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~ 346 (519)
|+...+...+.+......-..+...+.+-.+ .....+--..-.+...|++++|+..++.+... .|| ........+.
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4555555555554444333333333333333 23333333444566788899999999988775 444 4444555667
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHhhhcCCCCchh
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM--PIYPNAVIWEAAESRLLLEPECAAT 423 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~ 423 (519)
+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|+..+|..++++. ...-|...|..+-++.....+....
T Consensus 350 ~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 88889999999999998874 465 455566788899999999999888876 3344667777777777777777778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 424 HVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 424 ~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
......+|.-.|+++.|...+.+.+++.
T Consensus 428 ~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 428 LLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8888889999999999999888887764
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00097 Score=67.51 Aligned_cols=255 Identities=11% Similarity=0.049 Sum_probs=128.6
Q ss_pred CHHHHHHHHHH--HhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-C----------C
Q 044422 134 DASFLSTAVTS--CGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-R----------N 200 (519)
Q Consensus 134 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~----------~ 200 (519)
|..|--.++.. |...|+.+.|.+-.+.++ +..+|..+.++|.+..+++-|.-.+-.|.. + +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44444444433 445577777666655443 345677777777777777777766666651 0 1
Q ss_pred h-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 201 V-VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 201 ~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
. ..=.-..-.....|..++|+.+|.+-+. |..|=+.|-..|.+++|.++-+.--+..+ ..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1 1111112223455667777777766544 22333445566777777665543222211 234444555
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
.+-..++.+.|++.|++...+-...+..|.. ++.....+.+.+. |...|..-...+...|+++.|+.+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHH
Confidence 5555666777777776654332221111110 1111111222221 223344444444556666666666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
|...++ |-++++..|-.|+.++|-.+-++-+ |..+...|.+.|-..|++.+
T Consensus 935 Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg--------------------d~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 935 YSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG--------------------DKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--------------------cHHHHHHHHHHhhhhHHHHH
Confidence 665544 4445555555666666666555543 11233335566666666666
Q ss_pred HHHHHHHH
Q 044422 440 AARVRKLM 447 (519)
Q Consensus 440 A~~~~~~m 447 (519)
|..+|-+.
T Consensus 986 Av~FfTrA 993 (1416)
T KOG3617|consen 986 AVKFFTRA 993 (1416)
T ss_pred HHHHHHHH
Confidence 66665554
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.0015 Score=57.62 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=120.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcC
Q 044422 240 TSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHG 316 (519)
Q Consensus 240 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 316 (519)
..+-..+...|+-+....+........ +.+....+.++....+.|++..|...|.+... +|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 556666777777777777666644332 45666777788888999999999999988765 47789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
++++|..-|.+..+-... +...++.+...+.-.|+.+.|..++......+ .-|...-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999888875322 45567777777888899999999998888754 2366666778888899999999998876
Q ss_pred hC
Q 044422 397 QM 398 (519)
Q Consensus 397 ~~ 398 (519)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 54
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.014 Score=57.31 Aligned_cols=212 Identities=9% Similarity=0.038 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGF-IANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
.+++++|+....+....+ +-|...+..=+-+..+.+.++.|..+... .+. ..+...+--=.-+..+.+..++|+.
T Consensus 25 ~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHcccHHHHHH
Confidence 348999999999998765 44566666666678888999988855432 221 1111111111234457899999999
Q ss_pred HHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 192 VFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 192 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
.++...+.+..+...-...+-+.+++++|+++|+.+.+++..- +...-..++.+-... .+ +.+......|.
T Consensus 101 ~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~q~v~~v~e 172 (652)
T KOG2376|consen 101 TLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLLQSVPEVPE 172 (652)
T ss_pred HHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHHHhccCCCc
Confidence 9996666565566777778889999999999999997766421 122222222221111 11 12333333332
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-----h-----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 271 --IQVANSLISMYCKCGNVEEAVYVFNNMH--------GKD-----I-----VSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 271 --~~~~~~li~~~~~~~~~~~a~~~~~~~~--------~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
-..+-.....++..|++.+|++++.... ..| . ..--.+.-.+-..|+-.+|..++...++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1222233456778899999999998872 111 1 1122345567789999999999999988
Q ss_pred CCCCCCH
Q 044422 331 QRVKPDA 337 (519)
Q Consensus 331 ~~~~p~~ 337 (519)
.. .+|.
T Consensus 253 ~~-~~D~ 258 (652)
T KOG2376|consen 253 RN-PADE 258 (652)
T ss_pred hc-CCCc
Confidence 75 4454
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=8e-06 Score=48.68 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (519)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.07 E-value=0.00053 Score=62.39 Aligned_cols=61 Identities=8% Similarity=-0.119 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPV--RN-V---VSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
...+-.+...+.+.|+++.|...|+++.. |+ . .++..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455555556666666666666665542 21 1 24455555666666666666666666543
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.04 E-value=9.3e-05 Score=61.31 Aligned_cols=109 Identities=9% Similarity=0.016 Sum_probs=90.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
.++++..+. .|+. +..+..++...|++++|...|+...... +.+...|..+..++.+.|++++|...|+..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A---- 84 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHA---- 84 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH----
Confidence 345554442 3443 5556778889999999999999998854 447788899999999999999999988755
Q ss_pred CHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 403 NAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+.++|.++.++..+..++...|++++|+..|++..+..
T Consensus 85 -----------l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 -----------LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -----------HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999987754
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00031 Score=67.71 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG 351 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (519)
..-.+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+.. +-|......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4556667777778889999999999888777777778888888899999999999888652 335555665666788999
Q ss_pred CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 352 LVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
+.+.|..+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.++..+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999984 464 5589999999999999999999999997544
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.00098 Score=66.60 Aligned_cols=162 Identities=16% Similarity=0.205 Sum_probs=76.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
..+|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+. ..++-.|.+|.+.|++..|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 3444444444444433321 1223444555555555555555555321 1234445555566666655555
Q ss_pred HHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 044422 294 FNNMHGK--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371 (519)
Q Consensus 294 ~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 371 (519)
-.+...| ....|-+-..-+-+.|++.+|.++|-... .|+. .|..|-+.|..+...++.++-.- ..-
T Consensus 814 a~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l 881 (1636)
T KOG3616|consen 814 AEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHL 881 (1636)
T ss_pred HHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhh
Confidence 5555443 22334333344445555555555443321 2221 23444455555444444433211 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..|...+..-|-..|+...|++-|-+.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 234445566666777777777766555
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.0017 Score=65.81 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=141.0
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-C--------CCChHHHHHHHHHHHHhCC
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-G--------FIANVYVGSSLITLYSKCR 184 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--------~~~~~~~~~~li~~~~~~g 184 (519)
++.+.|++-.+-.. +...|..+.+.|.+.++++-|.--+..|... | ..|+ .+-..+.-.....|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 37777777666554 4577999999999998888877666665421 1 1222 22223333445678
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 185 VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 185 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.+++|..++.+-+. |..|=..|-..|.|++|+++-+.=-.- .=..||..-...+-..++.+.|.+.|+....
T Consensus 815 MlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 89999999988765 444556777889999998886443221 2235666666666667778777777654321
Q ss_pred cC-------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 265 MG-------------------FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 265 ~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
.. -..|...|.-....+-..|+++.|+.+|...+ -|-+++...|-.|+.++|-++-
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHH
Confidence 10 01223333444444445566777776666433 3566666677777777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
++- | |....-.|.+.|...|++.+|..+|.+..
T Consensus 962 ~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred Hhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 552 2 44555566777777888888877777655
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00024 Score=68.40 Aligned_cols=126 Identities=11% Similarity=0.082 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
..-.+|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445666667777888888888888887777777778888888888888888888887643 345666666677788888
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+.+.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888764 4556688888888888888888888888765
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.0016 Score=57.45 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
..+-..+.-.|+-+.+..+..... ..|....+..+....+.|++..|+..|.+...-. ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 334444555555555555555433 2334445556666666666666666666664432 455666666666666666
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
++++|..-|.+..+.. +.+...++.+.-.|.-.|+++.|..++..... .|...-..+.......|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666666655542 23344555555555555556555555554331 2444445555555555555555555443
No 127
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.012 Score=61.30 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=157.3
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 184 RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 184 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
+.++.|.++-++..+ +..|..+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-.+.+....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555555555444 457889999999999999998877332 255678999999999999999999998888
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 264 RMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV 343 (519)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 343 (519)
+..-.|.+. +.||-+|++.+++.+.++++. .||......+.+-|...|.++.|.-+|... ..|..|
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 776566543 678889999999888777654 577777888888899999998888777654 347777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHH-----------------HHHHHhCCCCCCHHH
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEA-----------------RDFIKQMPIYPNAVI 406 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-----------------~~~~~~~~~~p~~~~ 406 (519)
...+...|++..|...-++. -+..+|.-+..+|...+.+.-| .++|+.-|.- ...
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF--eEl 1298 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYF--EEL 1298 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcH--HHH
Confidence 88888888888776654432 3667787777777665544332 2233322210 001
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 407 WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
...++.++.++...-+.|..|...|.+-+ +++..+-++.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~L 1337 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKL 1337 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 13345555666666666666666666553 4444444443
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.95 E-value=0.0025 Score=66.58 Aligned_cols=130 Identities=8% Similarity=-0.073 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 210 (519)
++..+-.|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|....++... .+....+.+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45555555555555555555555555555431 22333445555555555555555555555542 223344445555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+.+.|++++|..+|++....+ +-+..++..+..++-..|+.++|...|....+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555666655555555422 122445555555555555555555555555543
No 129
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.92 E-value=0.035 Score=56.49 Aligned_cols=326 Identities=13% Similarity=0.062 Sum_probs=186.3
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC----
Q 044422 123 HHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---- 198 (519)
Q Consensus 123 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 198 (519)
+.++....++-|+..|-.+.-+....|+++.+-+.|++....- --....|+.+-..|..+|.-..|..+++.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3444445577789999999999999999999999999886543 33556788888899999999999999987653
Q ss_pred CC-hhHHHHHHHHHH-hcCChHHHHHHHHHHHH--CCC--CCCHHHHHHHHHHHHccC-----------CchHHHHHHHH
Q 044422 199 RN-VVSWTAIIAAFA-QEWQVDMCLELYRMMRN--SML--EPNDFTFTSILSACTGSG-----------ALGQGRSAHCQ 261 (519)
Q Consensus 199 ~~-~~~~~~li~~~~-~~~~~~~a~~~~~~m~~--~g~--~p~~~t~~~ll~~~~~~g-----------~~~~a~~~~~~ 261 (519)
|+ +..+-..-..|. +.+.+++++++-.+... .+. ......|..+.-+|...- ...++.+.++.
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 22 222222223333 34566666666555544 110 112234444444443211 12345566666
Q ss_pred HHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC-
Q 044422 262 TIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH----GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVK- 334 (519)
Q Consensus 262 ~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~- 334 (519)
..+.+ -.|+...|-++ -|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 470 av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 66654 22333333332 4556677777777666543 346677777777777777888877777655432 210
Q ss_pred -----------------CCHHHHHHHHHHHHcc---------C--------------CHHHHHH-------HHH-HHHHc
Q 044422 335 -----------------PDAITFLGVISSCRHG---------G--------------LVEEGKV-------YFD-SMAKH 366 (519)
Q Consensus 335 -----------------p~~~t~~~ll~~~~~~---------g--------------~~~~a~~-------~~~-~m~~~ 366 (519)
--..|...++..+-.. | +..++.. +.. +....
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 0011222222222200 0 0000000 000 00001
Q ss_pred C---------CC--cC------HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH-----------------HHHHH
Q 044422 367 G---------LK--PE------LDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN-AV-----------------IWEAA 410 (519)
Q Consensus 367 ~---------~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~-----------------~~~~~ 410 (519)
| .. |+ ...|......+.+.+..++|...+.+. ++.|- .. .+..+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1 11 22 234455566667777777776544443 22221 11 11445
Q ss_pred HHhhhcCCCCchhHHHHHHHHhccCCHHHHHH--HHHHHHHCC
Q 044422 411 ESRLLLEPECAATHVQLANLYAGVRCWDQAAR--VRKLMKDKG 451 (519)
Q Consensus 411 ~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~m~~~g 451 (519)
..++.++|+++.....|...+.+.|+-.-|.. ++..+.+.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 56778999999999999999999998877777 888887765
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.85 E-value=0.0027 Score=67.13 Aligned_cols=252 Identities=8% Similarity=0.038 Sum_probs=157.9
Q ss_pred CCCC-hHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 165 GFIA-NVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RN-VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFT 240 (519)
Q Consensus 165 g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 240 (519)
++.| +...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++.+.+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 3444 556889999999999999999999986652 33 34455555566777765554443
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 317 (519)
.++.......++..+..+.+.+... .-+...+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+...|... +
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 3333444444554455555566654 34556888999999999999999999999876 4778899999999999 9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH---
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF--- 394 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~--- 394 (519)
+++|..++.+.... +...+++..+..+|.++.... +-+...+-.+.+.....-....+..+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 99999999887654 445556777777777777643 11222333333333222112222222
Q ss_pred -HHhCCCCCC-HHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 395 -IKQMPIYPN-AVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 395 -~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
++..+-..+ ......++.++..+|.|..+..-|+..|. ++|..--.+=+.++-.|+.-
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 222210000 12334556678888888888888998887 44444222222333444433
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.0058 Score=63.90 Aligned_cols=233 Identities=10% Similarity=0.070 Sum_probs=161.2
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHH----HHHHHccCCCCChhHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGA-PYQCLAIRTGFIANVYVGSSLITLYSKCRVIID----AYKVFEEMPVRNVVSWT 205 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~ 205 (519)
...++.....+=.+.+..|.-++|- ++++++.+ ++...++.....+ +..+.+.. ..++..+-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRY-PHTELFQV 90 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhc-cccHHHHH
Confidence 3334555555555667777766653 34443321 2222232222222 22332222 24588899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
.|.....+.|.+++|..+++...+. .|| ......+..++.+.+++++|....+...... +.+......+..++.+.
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999885 565 4567788899999999999999999998876 66778888899999999
Q ss_pred CCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
|++++|..+|++...+ +..++..+..++-..|+.++|...|+...+. ..|....|+..+ +++..-..+++
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHH
Confidence 9999999999998754 3578888889999999999999999998875 344556666554 33444456666
Q ss_pred HHHHc----CCCcCHHHHHHHHHHHHHcC
Q 044422 362 SMAKH----GLKPELDHYSCVVDLLGRAG 386 (519)
Q Consensus 362 ~m~~~----~~~p~~~~~~~li~~~~~~g 386 (519)
++.-. |..........++..|.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 66532 23333445566666665543
No 132
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00036 Score=52.99 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCcCHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPDAITFLGVISSCRHGG--------LVEEGKVYFDSMAKHGLKPELDH 374 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~ 374 (519)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566677777999999999999999999 899999999999877653 34567889999999999999999
Q ss_pred HHHHHHHHHHc
Q 044422 375 YSCVVDLLGRA 385 (519)
Q Consensus 375 ~~~li~~~~~~ 385 (519)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00097 Score=61.02 Aligned_cols=281 Identities=10% Similarity=0.072 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHH-HHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCCHHHHH-
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVT-SCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK--CRVIIDAY- 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~- 190 (519)
.+.+|++++......+ |+-...|.-+. +|.+..-++-+.+++..-++. ++-++..-|.......| .|+..+++
T Consensus 166 HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 6799999999998753 44445554444 345667777777887776654 34444455544443333 23322211
Q ss_pred -HHHccCC-------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 191 -KVFEEMP-------------------------------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 191 -~~~~~m~-------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
.+-+... +.=+.+--.|+--|.+++++++|..+.+++.- ..|-...
T Consensus 243 k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 243 KELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred HHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHH
Confidence 1111111 11122233355567889999999988766622 1232222
Q ss_pred HHHHHHHHHccC-------CchHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHH
Q 044422 239 FTSILSACTGSG-------ALGQGRSAHCQTIRMGFFSY-IQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWN 306 (519)
Q Consensus 239 ~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 306 (519)
...+. .+..| ...-|.+.|+..-+++..-| +.--.++..++.-.-++++++-.++.+.. .|...+
T Consensus 321 lKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~- 397 (557)
T KOG3785|consen 321 LKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL- 397 (557)
T ss_pred HHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-
Confidence 22222 22222 34556666666655554322 23345566666666778888888887764 344444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGV-ISSCRHGGLVEEGKVYFDSMAKHGLKPELDH-YSCVVDLLGR 384 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 384 (519)
.+..+++..|.+.+|.++|-......++ |..+|..+ .++|.+.+.++.|+.++-++.. +.+..+ ...+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 4678899999999999999887655555 56666655 5578899999988877655432 223333 3445667888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHH
Q 044422 385 AGLLEEARDFIKQM-PIYPNAVIW 407 (519)
Q Consensus 385 ~g~~~~A~~~~~~~-~~~p~~~~~ 407 (519)
++.+--|-+.|+.+ ...|+...|
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCcccc
Confidence 88888888878777 346776666
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.77 E-value=0.0032 Score=52.28 Aligned_cols=126 Identities=19% Similarity=0.234 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH--HHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL--DHYSCVV 379 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li 379 (519)
.|..++..+ ..++...+...++.+.+....- .......+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444555555 4788888888888887753221 1223333456677888999999999888876522322 2334467
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 380 DLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
..+...|++++|+..++.....+ |. +..+..+..+|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~----~~------------~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA----FK------------ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc----hH------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888899999998887653111 11 22455578889999999999988875
No 135
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.8e-05 Score=44.52 Aligned_cols=30 Identities=20% Similarity=0.466 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSML 232 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 232 (519)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777766653
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.75 E-value=0.0078 Score=57.90 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=58.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPND-FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 289 (519)
+...|++++|+..++.+... .|+. .-.......+.+.++.++|.+.++.+.... +......-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 33455555555555555443 2332 233334445555555555555555555542 2224444555555555566655
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 290 AVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 290 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
|..+++.... .|+..|..|..+|...|+..++.....+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 5555555442 2445555566666655555555555444
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.75 E-value=0.05 Score=53.14 Aligned_cols=79 Identities=6% Similarity=0.111 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQR-VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
.+.....++++...- ..|+ .+|..+++...+..-++.|..+|.+..+.+..+ .+..+++++.-|| +++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 555666666665532 4443 357777888888888889999999988877666 6777788887766 46778888888
Q ss_pred HhC
Q 044422 396 KQM 398 (519)
Q Consensus 396 ~~~ 398 (519)
+--
T Consensus 425 eLG 427 (656)
T KOG1914|consen 425 ELG 427 (656)
T ss_pred HHH
Confidence 753
No 138
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0085 Score=58.20 Aligned_cols=102 Identities=14% Similarity=-0.037 Sum_probs=80.3
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCCh-hHHHHHHHHHHhcCChHH
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNV-VSWTAIIAAFAQEWQVDM 219 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~~~~~~~ 219 (519)
.+....|+++.|...|...+... ++|...|+.-..+|+..|++++|++=-.+-. .|+. -.|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45568899999999999988765 5588899999999999999999987666655 3553 478899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
|+..|.+=++.. +-+...++-+..++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999998876653 23445555565555
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.74 E-value=0.076 Score=55.05 Aligned_cols=213 Identities=9% Similarity=-0.004 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHH--hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSC--GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
++..|+.....+.++ .||. .|..++.++ .+.|..++|..+++.....+. -|..|...+-.+|-+.|+.++|..+
T Consensus 24 qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 678888888777664 2333 355566664 377888888877776655442 3777888888888888888888888
Q ss_pred HccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------chHHHHHHH
Q 044422 193 FEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA----------LGQGRSAHC 260 (519)
Q Consensus 193 ~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~ 260 (519)
|++... |+......+..+|.+.+.+.+-.+.--+|-+ .++-+...|-.++......-. ..-|....+
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888864 5555555666777777776654444333323 233445666666665543211 123555555
Q ss_pred HHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHh-c----CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 261 QTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNN-M----HGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 261 ~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
.+.+.+ ---+..-...-...+-..|++++|.+++.. . ...+...-+--+..+...+++.+..++-.++...|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 555543 111222222223344556778888887732 1 12233333444555556666666666665555554
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4e-05 Score=44.43 Aligned_cols=29 Identities=34% Similarity=0.725 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.70 E-value=0.0014 Score=53.71 Aligned_cols=89 Identities=9% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 317 (519)
.+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...++...+ .+...+..+...+...|+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 33344444444444444444444432 22334444444444444444444444443321 122333333444444444
Q ss_pred hHHHHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMK 330 (519)
Q Consensus 318 ~~~A~~~~~~m~~ 330 (519)
+++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.69 E-value=0.0017 Score=53.18 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
......+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|...++...+.+ +.+..++..+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34455556666666677777666665533 244566666666666666666666666665543 22344555555566
Q ss_pred HccCCHHHHHHHHHHHHH
Q 044422 348 RHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~ 365 (519)
...|+++.|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666665
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.67 E-value=0.00079 Score=51.18 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCC--------chHHHHHHHHHHHcCCCCcHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSML-EPNDFTFTSILSACTGSGA--------LGQGRSAHCQTIRMGFFSYIQVA 274 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~ 274 (519)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-....+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 9999999999999887642 34567789999999999999999
Q ss_pred HHHHHHHHh
Q 044422 275 NSLISMYCK 283 (519)
Q Consensus 275 ~~li~~~~~ 283 (519)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00067 Score=65.72 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 165 GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-R-----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 165 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
+.+.+......+++.+....+++.+..++.+... | -..|..++|+.|...|..++++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666777777777777777777777766652 1 234556888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
++.||..+.+.|++..|.++...|...+...+..|+...+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777666667776666666655
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0056 Score=50.79 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=34.0
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSY--IQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGYAQHGLAV 319 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 319 (519)
..+...|++++|...|+.+......+. ....-.+...+...|++++|+..++....+ ....+......|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 444444555555555555444431111 112223344444444444444444443221 1122333334444444444
Q ss_pred HHHHHHH
Q 044422 320 RAIDLFE 326 (519)
Q Consensus 320 ~A~~~~~ 326 (519)
+|...|+
T Consensus 136 ~A~~~y~ 142 (145)
T PF09976_consen 136 EARAAYQ 142 (145)
T ss_pred HHHHHHH
Confidence 4444444
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0025 Score=52.31 Aligned_cols=115 Identities=8% Similarity=-0.077 Sum_probs=90.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCch
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAA 422 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 422 (519)
+..-+...|+++.|.++|+.+.... +-+..-|-.|.-++-..|++.+|.+.|... +.++|+++.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A---------------~~L~~ddp~ 104 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRA---------------AQIKIDAPQ 104 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------HhcCCCCch
Confidence 3444677899999999999998754 335566777888999999999999988754 578899999
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHH
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKT 496 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 496 (519)
++..+..++...|+.+.|.+.|+......- .+|+..++.+..+..++.|.+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998776531 234555666666666666654
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0011 Score=64.35 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL 341 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 341 (519)
+.+......+++......+++.+..++.+.... -..|..++|+.|.+.|..+.++.+++.=...|+-||..||+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444555555666666666666666666555431 12355677778888888888888887777778888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
.|++.+.+.|++..|.++...|...+.-.+..|+.-.+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877777555555555555445555444
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.068 Score=47.20 Aligned_cols=116 Identities=11% Similarity=0.133 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
.|++++|+++|+...+.+ +.|..++..-+...-..|+--+|.+-+....+. +..|...|.-+-+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 455555555555555544 334444444444444444444554444444433 345555666666666666666666655
Q ss_pred HHhcC--CC-ChhHHHHHHHHHHHc---CChHHHHHHHHHHHHC
Q 044422 294 FNNMH--GK-DIVSWNSMIAGYAQH---GLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 294 ~~~~~--~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 331 (519)
++++. +| ++..+..+...+.-. .+.+-|.+.|.+..+.
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55543 33 222233333332222 2345566666665553
No 149
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.46 E-value=0.0016 Score=55.99 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------CchHHH
Q 044422 198 VRNVVSWTAIIAAFAQE-----WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG----------------ALGQGR 256 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~ 256 (519)
..+..+|..++..|.+. |+.+=....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45556666666666543 556666667777888888888888888887765421 335678
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhc
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGN-VEEAVYVFNNM 297 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~ 297 (519)
.++++|...|+-||..++..+++.+++.+. +.+..++.-.|
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 889999999999999999999998887765 33444444444
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.42 E-value=0.0019 Score=55.65 Aligned_cols=97 Identities=15% Similarity=0.261 Sum_probs=73.2
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 044422 291 VYVFNNM--HGKDIVSWNSMIAGYAQH-----GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG------------- 350 (519)
Q Consensus 291 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 350 (519)
...|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 445667777777777644 55666667777888888888888888888877542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 351 ---GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 351 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
.+.+-|.+++++|..+|+.||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999999999999999999999987764
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.00051 Score=50.93 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 350 GGLVEEGKVYFDSMAKHGL-KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
.|+++.|..+++++.+..- .++...+..+..+|.+.|++++|..+++..+..| .+......++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~----------------~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDP----------------SNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHH----------------CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCC----------------CCHHHHHHHH
Confidence 3566666666666665321 1133334446666666666666666666522111 1222333356
Q ss_pred HHHhccCCHHHHHHHHHH
Q 044422 429 NLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~ 446 (519)
.+|.+.|++++|++++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 666667777777666654
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.35 E-value=0.067 Score=56.09 Aligned_cols=159 Identities=8% Similarity=0.032 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC-----hhHHHHHHHHH
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN-----VVSWTAIIAAF 211 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~ 211 (519)
.|..+...|+..-+...|.+-|....+.. .-+........+.|++..+++.|..+.-...+.+ ...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555555666666666554432 2344556666666777777766666632222211 11222233345
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
.+.++...+..-|+...+.. +-|...|..+..+|.+.|++..|.++|....... +.+...---..-.-+..|++.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 55566666666666555543 2355566667777777777777777766655542 111111111122334556666666
Q ss_pred HHHHhcC
Q 044422 292 YVFNNMH 298 (519)
Q Consensus 292 ~~~~~~~ 298 (519)
..+..+.
T Consensus 651 d~l~~ii 657 (1238)
T KOG1127|consen 651 DALGLII 657 (1238)
T ss_pred HHHHHHH
Confidence 6655443
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0096 Score=51.05 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
.|..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+....+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555543322111 2344455555555555555555555554432 2233444444445
Q ss_pred HHhcCCH
Q 044422 281 YCKCGNV 287 (519)
Q Consensus 281 ~~~~~~~ 287 (519)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5544443
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.0061 Score=45.52 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
+..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455566667777777777777776542 2233555666666777777777777777776643 2333566667777777
Q ss_pred cCCHHHHHHHHHhC
Q 044422 385 AGLLEEARDFIKQM 398 (519)
Q Consensus 385 ~g~~~~A~~~~~~~ 398 (519)
.|++++|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 77777777776654
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.0041 Score=46.49 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
|..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344445555555555555555554432 1222344444555555555555555555544432 2222344444444444
Q ss_pred cCCHHHHHHHHHh
Q 044422 284 CGNVEEAVYVFNN 296 (519)
Q Consensus 284 ~~~~~~a~~~~~~ 296 (519)
.|+.+.|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4444444444443
No 156
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.13 Score=45.43 Aligned_cols=160 Identities=13% Similarity=0.160 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI-LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
.|..++-+....|+.+-|..+++.+...= |.+.-...| ..-+-..|++++|.++++.+.+.. +.|.++|-.-+-..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34555666677888899999998887652 443222222 222345799999999999999887 67788888777777
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHH
Q 044422 282 CKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG---LVEE 355 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~ 355 (519)
-..|+--+|++-+....+ .|...|.-+...|...|++++|.-.++++.-.. +.+...|..+.+.+.-.| +.+.
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 778887788877776654 589999999999999999999999999998752 334455555655544443 5667
Q ss_pred HHHHHHHHHHc
Q 044422 356 GKVYFDSMAKH 366 (519)
Q Consensus 356 a~~~~~~m~~~ 366 (519)
+.+.|.+..+.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 88888888774
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.21 E-value=0.19 Score=52.21 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=34.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|+..... .|+......+..+|.+.+.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHH
Confidence 3445555555555444333322 4455555555555555555555555554443 23344444444444444443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.00099 Score=49.35 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=56.4
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 044422 315 HGLAVRAIDLFEEMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 315 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (519)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888999999988876432 2444555578888899999999999888 32221 123444456788889999999998
Q ss_pred HHHh
Q 044422 394 FIKQ 397 (519)
Q Consensus 394 ~~~~ 397 (519)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.16 E-value=0.1 Score=49.26 Aligned_cols=110 Identities=21% Similarity=0.173 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
+.+..|.-+...|+...|.++-.+. -.||...|..-+.+++..+++++..++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4556677788889988888876665 247888999999999999999887776432 223466888999999
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
+.|+..+|..++..++ + ..-+..|.+.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~--~----------------------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP--D----------------------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC--h----------------------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999999863 1 22478899999999998875543
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.08 E-value=0.025 Score=46.54 Aligned_cols=83 Identities=6% Similarity=-0.016 Sum_probs=34.3
Q ss_pred HHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 180 YSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+...|++++|.++|+-+. ..+..-|-.|..++-..|++++|+..|....... +-|...+-.+..++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 334444444444444433 1222333344444444444444444444444332 123334444444444444444444
Q ss_pred HHHHHHH
Q 044422 257 SAHCQTI 263 (519)
Q Consensus 257 ~~~~~~~ 263 (519)
+.|+...
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 4444333
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.07 E-value=0.0095 Score=47.23 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=23.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLE--PNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+..++.+.|+++.|...|+.+...... .....+..+..++.+.|+.++|...++.+.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 444444444444444444444332100 01223333334444444444444444444443
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.04 E-value=0.02 Score=53.31 Aligned_cols=127 Identities=9% Similarity=0.105 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA-CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
.+|..+|....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666666777776665432 1222333322222 22234455566666666554 34555566666666
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+.+.++.+.|..+|+..... ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655541 123555555555555555555555555554
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.03 E-value=0.0063 Score=58.83 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=84.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH
Q 044422 309 IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL 388 (519)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (519)
...+...|++++|+..|++..+... -+...|..+..+|...|+++.|...++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4567788999999999999988643 356778888889999999999999999998853 33667788889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 389 EEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 389 ~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
++|...|+.. ++++|.++.+...+..+
T Consensus 87 ~eA~~~~~~a---------------l~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKG---------------ASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHH---------------HHhCCCCHHHHHHHHHH
Confidence 9999877644 67788887776655433
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.03 E-value=0.019 Score=48.99 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 112444455555555555555555555444
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.00 E-value=0.072 Score=49.79 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCH
Q 044422 273 VANSLISMYCKC-GNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-----PDA 337 (519)
Q Consensus 273 ~~~~li~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~ 337 (519)
++..+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|.++|++....-.. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455555566666 677777777765542 11 235566777888999999999999988765322 222
Q ss_pred H-HHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCcC--HHHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 044422 338 I-TFLGVISSCRHGGLVEEGKVYFDSMAKH--GLKPE--LDHYSCVVDLLGR--AGLLEEARDFIKQMP 399 (519)
Q Consensus 338 ~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 399 (519)
. .|...+-++...|++..|...+++.... ++..+ ......|+.+|-. ...+.+|..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 2223333566678999999999888742 33333 3455667777754 345777777777773
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.98 E-value=0.019 Score=45.43 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCcCHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK--PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG--LKPELDHYSCVV 379 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li 379 (519)
++......+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...++.+.... .......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666677777777777766653211 112344455666667777777777777666422 111234455566
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 044422 380 DLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~ 398 (519)
.++.+.|+.++|...++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 6666777777777766655
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.029 Score=55.82 Aligned_cols=258 Identities=12% Similarity=0.101 Sum_probs=153.4
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----------CCChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 044422 168 ANVYVGSSLITLYSKCRVIIDAYKVFEEMP-----------VRNVVSWTAIIAAFAQEWQ--VDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 234 (519)
|....+.+=+..|...|.+++|.++----. .-+...++..=.+|.+-.+ +-+...-+++|+++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 333444555556677777777665422111 1233445555667777665 345556678888999889
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------C
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--------------K 300 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------~ 300 (519)
+... +...|+-.|.+.+|.++|.+ .|.. |..++.|...+.++.|.++...-.. .
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 8763 45667778889998888754 3322 3455666666667777666653321 0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEE------MMKQRV---KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE 371 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 371 (519)
++.-=.+....+...|+.++|..+.-+ +.+-+- ..+..+...+...+-+...+..|.++|..|-+
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 111112334445567777777665321 111111 12334455555555566677777888877753
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVI-WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...+++.....++|++|..+-+..+ ..||... |... +. ...-+..--.+|.++|+..+|..+++++..
T Consensus 776 ---~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw---LA----E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 ---LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW---LA----ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---HHHHhhheeecccchHhHhhhhhCccccccccchHHHH---hh----hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2346778888999999999999884 4454321 1100 00 011233346799999999999999999876
Q ss_pred CCCC
Q 044422 450 KGLK 453 (519)
Q Consensus 450 ~g~~ 453 (519)
..+.
T Consensus 846 nav~ 849 (1081)
T KOG1538|consen 846 NAVA 849 (1081)
T ss_pred hhhh
Confidence 6543
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.90 E-value=0.024 Score=54.89 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
....+...|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 34567788999999999998865 356788888999999999999999999998864 23567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
+.|...|++..+. .|+.......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999984 46555444443
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.89 E-value=0.049 Score=43.08 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC---cHHHHHHHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS---YIQVANSLISMY 281 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 281 (519)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++...... +. +......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556667788888888888777776544 2345566677777778888877777766542 11 122222223355
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 044422 282 CKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA 313 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 313 (519)
...|+.++|.+.+-....++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777776665544444444444444443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.017 Score=53.77 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 044422 237 FTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGY 312 (519)
Q Consensus 237 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 312 (519)
.+|..+++..-+.+..+.|..+|....+.+ +..++.+..+++..+ ..++.+.|..+|+...+ .+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 457777777778777888888888887543 223333434444332 24566668888887664 4667777777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
...|+.+.|..+|++.... +.++. ..|...++-=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887654 33222 3677777777777888888888777776
No 171
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.84 E-value=0.16 Score=49.85 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSM-LEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS-YIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
.+.....+++.+..- ..|+ .+|...++..-+..-+..|..+|.++.+.+..+ ++.+++++|..||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 556666776665532 3343 567888888888889999999999999887777 78888999998885 6788899999
Q ss_pred HhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHc-C-
Q 044422 295 NNMHG--KD-IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA--ITFLGVISSCRHGGLVEEGKVYFDSMAKH-G- 367 (519)
Q Consensus 295 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~- 367 (519)
+--.+ +| +.--...++-+...|+-..+..+|++....++.||. ..|..+|+-=...|++..+.++-+++... .
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 85443 34 344466777888889999999999999888766663 57999999888999999998888877642 1
Q ss_pred -CCcCHHHHHHHHHHHHHcCCHHHH
Q 044422 368 -LKPELDHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 368 -~~p~~~~~~~li~~~~~~g~~~~A 391 (519)
..+....-..+++.|.-.+...--
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccccc
Confidence 233333334456666555544333
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.83 E-value=0.004 Score=43.95 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 044422 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR-CWDQAARVRKLMKD 449 (519)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~m~~ 449 (519)
+...|..+...+...|++++|...|++. ++++|.++.+|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a---------------i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA---------------IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH---------------HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888999999999999999988744 6778889999999999999999 79999999998765
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.82 E-value=0.058 Score=46.22 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34556666666777777777777777765432222 3456666677777788888887777777632 22344555566
Q ss_pred HHHHHcCC
Q 044422 380 DLLGRAGL 387 (519)
Q Consensus 380 ~~~~~~g~ 387 (519)
..+...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 66666554
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.068 Score=45.56 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
...|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456677777778888999888888887653222 23467777788888999999999998887642 22344555566
Q ss_pred HHHH-------HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC
Q 044422 380 DLLG-------RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPE 419 (519)
Q Consensus 380 ~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (519)
..+. ..|++++|...+++.. ..+++++..+|.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~--------~~~~~a~~~~p~ 152 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA--------EYWKQAIALAPG 152 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH--------HHHHHHHHhCcc
Confidence 5665 7888888877776541 334455555554
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.81 E-value=0.0038 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=49.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+...+.+.|++++|...|+.+ ++..|.++.++..+..++...|++++|..+|++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~---------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA---------------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH---------------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456788999999999988866 45567777888889999999999999999999987653
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.78 E-value=0.11 Score=48.54 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=73.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHH----cCCCcC--HHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG-GLVEEGKVYFDSMAK----HGLKPE--LDHYSCVV 379 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li 379 (519)
..+..|...|++..|-+++..+ ...|... |+++.|.+.|++..+ .| .+. ..++..+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 3556667777777766655554 4556666 889999999888764 23 221 34566788
Q ss_pred HHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 380 DLLGRAGLLEEARDFIKQMP---IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+.+.|++++|.++|++.. ...+..-|+. ...|...+-.+...|++..|.+.+++....
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~-----------~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA-----------KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88999999999999999862 1111111111 113344566778889999999999988654
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.12 Score=45.85 Aligned_cols=132 Identities=12% Similarity=0.043 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc-----HHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY-----IQVAN 275 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~ 275 (519)
..+.+.++.++.-.+.+.-.+.++++..+...+-+......|.+.--+.|+.+.|...++...+..-..+ .-+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4456777778878888888899999988876666777778888888899999999999997766432333 33334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
..-..|.-.+++..|...|+++.. .|+...|.-.-+..-.|+..+|.+.++.|.+.-
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444556677889999999987765 355666666666677889999999999998763
No 178
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.73 E-value=0.0014 Score=38.63 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.0
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
++++++++|+++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46889999999999999999999999999986
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.71 E-value=0.18 Score=45.78 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=29.5
Q ss_pred HHHhCCCHHHHHHHHccCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 179 LYSKCRVIIDAYKVFEEMPV--RNVV-S---WTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
.+.+.|++++|.+.|+.+.. |+.. . .-.+..++.+.+++++|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34456667777766666652 2221 1 123445666667777777777666654
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.68 E-value=0.042 Score=57.52 Aligned_cols=178 Identities=11% Similarity=0.063 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
...+...|-...+.. +.-...|..|...|+...+...|.+.|+...+ .+..++....+.|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444444443333332 22356889999999999999999999998776 35678888999999999999999984332
Q ss_pred HHCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHH
Q 044422 329 MKQRVKPDAITFLG--VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAV 405 (519)
Q Consensus 329 ~~~~~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 405 (519)
-+.. +.-...++. .--.|...++...+..-|+...+.. +.|...|..+..+|.++|++.-|.+.|.+.. ++|+.
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s- 629 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS- 629 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-
Confidence 2221 111122222 2334667788889998888888753 3478899999999999999999999998873 33432
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
.|.. .-.....+..|++.+|...++...
T Consensus 630 ~y~~---------------fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGR---------------FKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHH---------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222 223445666777777777766654
No 181
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.64 E-value=0.64 Score=44.01 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
+.+.-|.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++-.. .- .+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 3445566778889999999999999989999999999999999999988876442 11 23568899999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
..+|..+..++ + +..-+..|.++|++.+|.+..-+.+
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999888772 2 2446788999999999988866664
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.067 Score=48.69 Aligned_cols=108 Identities=12% Similarity=-0.024 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
-|...|..|-.+|...|+.+.|..-|.+..+.. .++...+..+..++..+.. -+-+...-..+.+++
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~------------~~~ta~a~~ll~~al 220 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAG------------QQMTAKARALLRQAL 220 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC------------CcccHHHHHHHHHHH
Confidence 367788888888888888888888888887632 3455566666665544321 111222334556778
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTN 455 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 455 (519)
+++|.+..+...|...+...|++.+|...++.|.+..-.-+
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 89999999999999999999999999999999999874333
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.016 Score=52.36 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=84.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHHcCCHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP-ELDHYSCVVDLLGRAGLLE 389 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 389 (519)
-+.+.+++.+|+..|.+.++-. +-|.+-|..=..+|++.|.++.|.+-.+..+.. .| -..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3677889999999999998863 236677777788999999999998888887763 34 3568899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHH
Q 044422 390 EARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWD 438 (519)
Q Consensus 390 ~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~ 438 (519)
+|.+.|+ +++.++|.+......|-.+=.+.+...
T Consensus 167 ~A~~ayk---------------KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYK---------------KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHH---------------hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9998665 558999998866655555544444433
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.46 E-value=0.2 Score=50.98 Aligned_cols=72 Identities=10% Similarity=-0.057 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEA 409 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 409 (519)
+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++. ...|...+|-.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 44555555444555677777777777777743 66777777777777777777777777664 44555444533
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.037 Score=50.11 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-AITFLGVISSCRHGGLVE 354 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~ 354 (519)
+-..+.+++.+|...|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..... .|. ..+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 456788999999999998775 47788888899999999999999988887764 333 568999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSC 377 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~ 377 (519)
+|.+.|++.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 99999999988 6798887654
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.38 E-value=0.027 Score=54.42 Aligned_cols=119 Identities=16% Similarity=0.008 Sum_probs=82.4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCch---hHHHHHHHHhccCCHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAA---THVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
.+...++.+..+|...|++++|...|++. ++++|++.. +|..+..+|...|+.++|+..+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rA---------------LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETA---------------LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678899999999999999999988753 556666663 488899999999999999999999
Q ss_pred HHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhh--HHHHHHHHHHHHHHcCCCCCcchhhhhhhhhhcCCCC
Q 044422 447 MKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSE--ILPVLDFLVDQMKTLGYVPEVHEEKVDDASHKRTEPF 519 (519)
Q Consensus 447 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~ 519 (519)
..+.+ ++...++ ...+..+. ....++++++++++.|..-......-...+.+-.-||
T Consensus 138 ALels---n~~f~~i-------------~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPf 196 (453)
T PLN03098 138 ALRDY---NLKFSTI-------------LNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPF 196 (453)
T ss_pred HHHhc---chhHHHH-------------HhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchH
Confidence 98863 1101000 01111111 1236677889999999876665555555555555554
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.36 E-value=1.1 Score=43.41 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=88.2
Q ss_pred ccCccchhhHHhhhhhcCCCC---CCCch-HHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCcc
Q 044422 39 ISSSKSLHKALRVLDIISPRT---RDSTK-TEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVV 114 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (519)
+.+.+++.+|..+|..+-... ..... ....++++.++...+- +........+....+......++.++..-..+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nl--d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNL--DLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 447799999999998874322 23333 4556778888765532 22222222222222333344566665554555
Q ss_pred CHHHHHHHHHHHhHC--CCCC------------CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC----ChHHHHHHH
Q 044422 115 DVEKLISMHHDLHRE--RLKV------------DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFI----ANVYVGSSL 176 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 176 (519)
..+.|++.|....++ +-+| |-..=+..+.++...|++.++..+++.+...=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888888777654 3222 1222345667778899999999988888765443 688888887
Q ss_pred HHHHHhC
Q 044422 177 ITLYSKC 183 (519)
Q Consensus 177 i~~~~~~ 183 (519)
+-.+++.
T Consensus 174 vlmlsrS 180 (549)
T PF07079_consen 174 VLMLSRS 180 (549)
T ss_pred HHHHhHH
Confidence 7777664
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.36 E-value=0.23 Score=50.42 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+...|..+.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445544444445566666666666666554 455566666666666666666666666544
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.36 E-value=0.015 Score=40.78 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=31.5
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
+.|+++.|..+|+.+.+.. +-+..++-.+..+|.+.|++++|..+++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566667777777666553 3355556666667777777777777776665
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.29 E-value=0.018 Score=40.44 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=23.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+.|++++|.++|+++.+.... +......+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555443211 333444445555555555555555555544
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.23 E-value=0.62 Score=39.33 Aligned_cols=98 Identities=12% Similarity=0.004 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-----DIVSWNS 307 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 307 (519)
.|+...-..|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++++.+. ++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444455555555555555555555544334444444444444444445555554444444321 2222233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+...+...|+...|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33444444444444444444443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=96.22 E-value=0.53 Score=39.11 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHH
Q 044422 346 SCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHV 425 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 425 (519)
-+...|++++|..+|+-+...+ ..+..-+..|..++-..+++++|...|... ..++++|+..+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A---------------~~l~~~dp~p~f 109 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVA---------------FTLLKNDYRPVF 109 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHcccCCCCccc
Confidence 3457899999999999998755 235666777888888899999999988754 345677888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 044422 426 QLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 426 ~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.....|...|+.+.|...|+...+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 899999999999999999998877
No 193
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.19 E-value=0.55 Score=44.98 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHGK-------DIVSWNSMIAGYAQ---HGLAVRAIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
-.++-+|....+++...++++.+... ....-....-++.+ .|+.++|.+++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888763 12222234445566 788999999998866666677777887777
Q ss_pred HHHHc---------cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH--HHh
Q 044422 345 SSCRH---------GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAA--ESR 413 (519)
Q Consensus 345 ~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~--~~~ 413 (519)
..|-. ....++|...|.+--+ +.|+...--.++..+...|.-.+...-..+++ ..++.+ ++.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----~~l~~llg~kg 297 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIG-----VKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHH-----HHHHHHHHhhc
Confidence 66521 2236677777776654 33554433233333444443222221122221 111111 122
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..-.-.+...+.+++.+..-.|++++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2222345566777899999999999999999999876
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.14 Score=42.37 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCcCHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-----KHGLKPELDHYS 376 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~ 376 (519)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.++|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556666777888888888888877753 4477788888888888888888888887765 357778776543
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.18 E-value=0.016 Score=41.33 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
-..|.+.+++++|.+.++.+ +.++|.++..+..+..++...|++++|.+.|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~---------------l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERA---------------LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHH---------------HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35678899999999887765 56788888999999999999999999999999998765
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.18 E-value=0.21 Score=39.50 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE----LDHYSCVVDL 381 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~ 381 (519)
+..++-..|+.++|..+|++....|...+ ...+..+...+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45567788999999999999988886654 3456667778889999999999999887532 33 2222334457
Q ss_pred HHHcCCHHHHHHHHHhC
Q 044422 382 LGRAGLLEEARDFIKQM 398 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~ 398 (519)
+...|+.++|.+.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 78889999998877543
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.36 Score=43.01 Aligned_cols=134 Identities=15% Similarity=0.079 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHH-----
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC----- 377 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----- 377 (519)
...+.++..+.-.|.+.-....+++.++...+-+......|.+.-.+.|+.+.|...|++..+..-..+..+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455677888888899999999999999877666778888888888899999999999998875333344433333
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
....|.-++++..|...+.++. ..+|.++-+-+.-+-++.-.|+..+|++.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~---------------~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEIL---------------RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhcc---------------ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3344555677888888887764 2233333333334445556788999999999998864
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.03 E-value=0.12 Score=41.39 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHH
Q 044422 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~ 383 (519)
..|+..+..+++.+|+..+++..|.++.+... ..+++.+..+|..|++=..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 56778888888888888888888888888776 5677777778877776443
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.03 E-value=1.1 Score=40.62 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=109.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT---FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.+...+-.....+...|++++|.+.|+++...-..+ ... .-.+..++.+.+++++|...++...+..-.....-|-
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 344444455666778999999999999998753222 222 2456678899999999999999988763221122222
Q ss_pred HHHHHHHh--cC---------------CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 276 SLISMYCK--CG---------------NVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 276 ~li~~~~~--~~---------------~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
..+.+.+. .+ +...+.+.+ ..+..++.-|-...-..+|...+..+...= -..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---a~~ 177 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDRL---AKY 177 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHHH---HHH
Confidence 23333221 11 111111111 233445555555555555555444443210 111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKH--GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-..+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+....+
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 113455577888888888888888752 22334556667888888888888888876654
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.00 E-value=0.75 Score=38.84 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=102.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHH
Q 044422 266 GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR---VKPDAI 338 (519)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~ 338 (519)
...|+...--.|..+..+.|+..+|...|.+... .|....-.+..+....+++..|...++++.+.. -.||.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 3468888888899999999999999999998765 477888888889999999999999999988753 34553
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-..+...+...|++..|...|+..... .|+...-......+.++|+.++|..-+..+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 445677889999999999999999884 466655555666788899888776544433
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.88 E-value=0.12 Score=47.39 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL----DHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAES 412 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~~~~ 412 (519)
..|...+....+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+- ..|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---------- 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---------- 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------
Confidence 345555554456688888888888888632 432 456678888888999999998887661 111
Q ss_pred hhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 413 RLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 413 ~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..|..+.++..++.+|...|++++|.++|+...+.-
T Consensus 212 ---~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 ---KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 122334556667888888999999999999887754
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.84 E-value=0.042 Score=38.05 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555543 11344444455555555555555555555544
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.78 E-value=0.17 Score=40.49 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCChhHHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN--NMHGKDIVSWNSMIAGY 312 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~li~~~ 312 (519)
|..++..+|.++++.|+.+....+++.. .|+..+.. ...+. +. .-..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~---------~~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGK---------KKEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCc---------cccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 4566777777777777777776666433 23332210 00000 11 01126888999999999
Q ss_pred HHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc
Q 044422 313 AQHGLAVRAIDLFEEMMK-QRVKPDAITFLGVISSCRH 349 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~ 349 (519)
+.+|++..|+++++...+ -+++.+..+|..|++-+..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999998766 4688888899999885443
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.77 E-value=0.088 Score=49.70 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHH
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG---------KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK----QR-VKPDAI 338 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~ 338 (519)
.|..|.+.|.-.|+++.|+...+.-.. ..-.++..+..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444444455555555544332110 1123445555555556666666665554321 11 112233
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH----c-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAK----H-GLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
..-+|-..|.-..++++|..++++-.. . ...-....+-+|..+|...|.-++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344445555555555666555544331 0 011233444456666666666666655544
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.73 E-value=0.05 Score=38.20 Aligned_cols=60 Identities=18% Similarity=-0.014 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHcc
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEE 195 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 195 (519)
+.+|..+...+.+.|++++|...|...++.. +-+...|..+..++.+.| ++++|++.|++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4445555555555556666665555555543 334445555555555555 45555555543
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.65 E-value=0.21 Score=44.90 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred HHHHHccCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 044422 189 AYKVFEEMP--VRNVVSWTAIIAAFAQE-----WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG----------- 250 (519)
Q Consensus 189 A~~~~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 250 (519)
..+.|.... ++|-.+|-+.+..|... ++++=....++.|++-|+.-|..+|+.||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 56777777777776554 556767777888999999999999999998876543
Q ss_pred -----CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHhcCC
Q 044422 251 -----ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN-VEEAVYVFNNMHG 299 (519)
Q Consensus 251 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 299 (519)
+-+-+..++++|...|+.||..+-..|++++.+.+- ..+..++.-.|.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 234578899999999999999999999999998875 4556666666653
No 207
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.57 E-value=0.13 Score=46.08 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=74.7
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------
Q 044422 289 EAVYVFNNMH--GKDIVSWNSMIAGYAQH-----GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG---------- 351 (519)
Q Consensus 289 ~a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---------- 351 (519)
.....|.... ++|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|..|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3444555555 46777777777776543 456666677788888898889999999888775542
Q ss_pred ------CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 352 ------LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 352 ------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
.-+-+..++++|..+|+.||..+-..|+.++.+.|-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224478899999999999999999999999998875
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.55 E-value=0.85 Score=43.39 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCC-CcCH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMM----KQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDSMAK----HGL-KPEL 372 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~ 372 (519)
..|..|-..|.-.|+++.|+...+.=. +-|-+ .....+..+-.++.-.|.++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666666667788998887665422 22321 1245677788888889999999988876542 221 1233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 373 DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.+.-+|...|.-...+.+|..++.+-- .+-+.+.-.-....+++.|..+|...|.-+.|+.+.+.-.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL---------aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL---------AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445567777777778888888776431 00000111112345888899999999999999999888776654
Q ss_pred CCC
Q 044422 453 KTN 455 (519)
Q Consensus 453 ~~~ 455 (519)
+..
T Consensus 347 ev~ 349 (639)
T KOG1130|consen 347 EVN 349 (639)
T ss_pred HhC
Confidence 433
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.14 Score=42.48 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPNAVIWE 408 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~ 408 (519)
+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+ ++.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45566777888999999999999999854 457889999999999999999999998866 5666655443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.47 E-value=0.39 Score=42.35 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG--LKPELDHYSCVVDLL 382 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~ 382 (519)
+..++.-|-...-..+|...+..+.+.= -. .-..+..-|.+.|.+..|..-++.+.+.= ..........++.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~l---a~-~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNRL---AE-HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHHH---HH-HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 3344444444444555544444443210 00 11123444566666666666666655421 111122334555666
Q ss_pred HHcCCHHH
Q 044422 383 GRAGLLEE 390 (519)
Q Consensus 383 ~~~g~~~~ 390 (519)
.+.|..+.
T Consensus 189 ~~l~~~~~ 196 (203)
T PF13525_consen 189 YKLGLKQA 196 (203)
T ss_dssp HHTT-HHH
T ss_pred HHhCChHH
Confidence 66665553
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.37 E-value=2.6 Score=40.04 Aligned_cols=285 Identities=14% Similarity=0.085 Sum_probs=172.4
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHh--cCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHH
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCG--STRNIRGGAPYQCLAIRTGFIANVYV--GSSLITL 179 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~ 179 (519)
+...+.....+|-..|.++-.+-.+. +.-|..-...++.+-. -.|+.+.|.+-|+.|... |.... ...|.-.
T Consensus 88 LStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyle 163 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLE 163 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHH
Confidence 33444445555666666555544321 3446666666666533 358888888888888752 33322 2333333
Q ss_pred HHhCCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHc---cC
Q 044422 180 YSKCRVIIDAYKVFEEMPV--R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPNDF--TFTSILSACTG---SG 250 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~g 250 (519)
--+.|+.+.|...-+..-. | -...+.+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-+. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 4567888888777766542 2 34578889999999999999999998776543 445543 22334443322 23
Q ss_pred CchHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQ-VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+...|...-.+..+ +.|+.. .--....++.+.|++.++-.+++.+-+..+..--..+..+.+.|+ .+..-+++..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHH
Confidence 44455554444443 344432 223345678899999999999998876433322223333445554 3333333332
Q ss_pred HC-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHhC
Q 044422 330 KQ-RVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG-RAGLLEEARDFIKQM 398 (519)
Q Consensus 330 ~~-~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 398 (519)
+. .++|| ...-..+..+-...|++..|..--+...+ ..|....|..|.+.-- ..|+-.++...+.+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 21 23444 44556667777888998888777666665 5688888877776554 459999999888776
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=4.1 Score=42.12 Aligned_cols=293 Identities=11% Similarity=0.010 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChh---hHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIR---GGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (519)
.+..|+++-.++...-..- ...|..+..-+.+..+.. .+..+-+++. ... -....|..+..-...+|+.+-|..
T Consensus 452 ~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 452 LYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred hhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence 4566666666664332222 455666666655543222 2222222221 111 233467777777777899999998
Q ss_pred HHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------CC-CHHHHHHHHHH-------
Q 044422 192 VFEEMPV--------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSML----------EP-NDFTFTSILSA------- 245 (519)
Q Consensus 192 ~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----------~p-~~~t~~~ll~~------- 245 (519)
+++.=+. -+..-+...+.-+.+.|+.+-...++-.+++.-. .| ....|..+++-
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~ 608 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLY 608 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhh
Confidence 8876552 1334456667777888888887777766654310 11 11122222220
Q ss_pred -HHccCCchHHHHHH--HHHH----HcCCCCcHHHHHHHHHHHHhcCCHHHHHH----------HHHhcCCC-----Chh
Q 044422 246 -CTGSGALGQGRSAH--CQTI----RMGFFSYIQVANSLISMYCKCGNVEEAVY----------VFNNMHGK-----DIV 303 (519)
Q Consensus 246 -~~~~g~~~~a~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~----------~~~~~~~~-----~~~ 303 (519)
+.+.++-..+..-+ +... ..|..|+ .....+.+.+.....-..+ +.+.+... ...
T Consensus 609 d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dl 685 (829)
T KOG2280|consen 609 DFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDL 685 (829)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 01111111111111 1100 0122222 2223333443333111111 11111111 123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
+.+-.+.-+...|+-.+|.++-.+. --||...|..=+.+++..+++++.+++-+..+. +.-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 4555666677788888888876665 357888888888999999999877766555431 344666889999
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
+.|+.++|.+++.+.+-.+ ....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l~-----------------------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ-----------------------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCChH-----------------------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999998885221 247899999999999887544
No 213
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.25 E-value=4.8 Score=43.88 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHH----HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH---H
Q 044422 233 EPNDFTFTSILSAC----TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS---W 305 (519)
Q Consensus 233 ~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~ 305 (519)
.|+...+..+..+| ...+.+++|.-+|+..-+. .-.+.+|..+|++++|..+-.++..+-... -
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 55665555554443 3345556655555443221 234566666777777777766665532222 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
-.|+.-+...+++-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 456666667777777766666654
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.22 E-value=0.11 Score=37.59 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhh-cCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL-LEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+|+.+...|...|++++|++.+++.- .. .+.+. ..|....++..+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al--------~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKAL--------DI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH--------HH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567888899999999999999988761 00 00000 0011235788899999999999999999998643
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.18 E-value=2 Score=43.36 Aligned_cols=216 Identities=13% Similarity=0.095 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhcCCChhh--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh
Q 044422 136 SFLSTAVTSCGSTRNIRG--GAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ 213 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 213 (519)
-.++..=.+|.+-++..- ...-++++.+.|-.|+.... ...++-.|.+.+|.++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------ 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------
Confidence 345555666666665443 33345566777877877643 3456778999999888864
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC--C-CCcHHHHHHHHHHHHhcCCH---
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG--F-FSYIQVANSLISMYCKCGNV--- 287 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~--- 287 (519)
.|...+|+++|..|+-.+ ...-+...|..++-..+...-.+.. + .| .+..+.+..+|+.
T Consensus 658 ~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KA 722 (1081)
T KOG1538|consen 658 SGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKA 722 (1081)
T ss_pred cCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhh
Confidence 444555555554443210 1111222232222222221111100 0 11 1122223333333
Q ss_pred ----------HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 288 ----------EEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 288 ----------~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
+-+.++-.++...+..+...+..-+-+...+..|-++|..|-+ ...+++.+...+++.+|.
T Consensus 723 i~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 723 IEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhH
Confidence 3344444444444555555555556666777888888888742 234677778888888888
Q ss_pred HHHHHHHHcCCCcCH-----------HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 358 VYFDSMAKHGLKPEL-----------DHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 358 ~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+-+...+ +.||+ .-|.---++|.+.|+-.+|.++++++
T Consensus 794 alAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 794 ALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 88777665 23333 22334456778888888888888877
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.16 E-value=0.45 Score=43.65 Aligned_cols=92 Identities=21% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCcCHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA----ITFLGVISSCRHGGLVEEGKVYFDSMAKHG--LKPELDHYSCV 378 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l 378 (519)
|+..+..+.+.|++++|...|+.+.+.- |+. ..+-.+..+|...|+++.|...|+.+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344455555555555555432 221 233444555555666666666666655321 01122333334
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 044422 379 VDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~ 398 (519)
...+...|+.++|..+|+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555556666666655544
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.77 Score=42.00 Aligned_cols=115 Identities=11% Similarity=-0.001 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---CHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR---VIIDAYK 191 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~ 191 (519)
+.+..+.-++.-...+ +-|...|-.|-.+|...|+...|...|....+.- ++|...+..+..++.... ...++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3555555555544443 4477888888888888888888888888887753 456666666666554432 3456777
Q ss_pred HHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 044422 192 VFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSM 231 (519)
Q Consensus 192 ~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 231 (519)
+|+++.. .|+.+...|...+...|++.+|...|+.|.+..
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7877763 355666667777888888888888888887764
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.00 E-value=0.07 Score=38.56 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=9.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
+..+..++...|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444444443
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=1.9 Score=41.21 Aligned_cols=120 Identities=12% Similarity=0.022 Sum_probs=58.7
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH---------------HHHH
Q 044422 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSW---------------NSMI 309 (519)
Q Consensus 245 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~li 309 (519)
++.-.|+.++|..+--...+.. ..+....-.=..++--.++.+.+...|.+...-++..+ ..=.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 3445677777766655555442 11111111111223344566777777776655333221 1112
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQ---RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
.-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+.++|..--++..+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 2234556666666666665542 2344444555555555556666666555555444
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.85 E-value=1.1 Score=35.58 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF 268 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 268 (519)
..+..++....+|+-+.-.+++..+.+.+ .++......+..+|.+.|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44566777788888888888888776543 667777777888888888888888888888877743
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.80 E-value=1.2 Score=36.49 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
...++..+...+.......+++.+...+. .+....+.++..|++... .+....++. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666667777777777666552 455566666666665432 333333331 1122223335666666
Q ss_pred cCCHHHHHHHHHhCC
Q 044422 385 AGLLEEARDFIKQMP 399 (519)
Q Consensus 385 ~g~~~~A~~~~~~~~ 399 (519)
.+.++++..++.+++
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 666666666666664
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.56 E-value=2.1 Score=34.94 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChH
Q 044422 139 STAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVD 218 (519)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 218 (519)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+ .++....+.. ..+......+++.|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 356666666667777777777777665 356667777777777653 3334444442 223333444566666666666
Q ss_pred HHHHHHHHH
Q 044422 219 MCLELYRMM 227 (519)
Q Consensus 219 ~a~~~~~~m 227 (519)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 666666554
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.85 Score=43.46 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
.+..+..++.+.+++..|.+.-+..++.+ +++....-.=.++|...|+++.|...|+++ ++++|
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka---------------~k~~P 322 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKA---------------LKLEP 322 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHH---------------HHhCC
Confidence 46666777888888888888888887754 456666666677888888888888877755 45566
Q ss_pred CCchhHHHHHHHHhccCCHHHH-HHHHHHHHHC
Q 044422 419 ECAATHVQLANLYAGVRCWDQA-ARVRKLMKDK 450 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A-~~~~~~m~~~ 450 (519)
.|-.+-..|+..--+..++.+. .++|..|-..
T Consensus 323 ~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666667666666665554 6678887544
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.42 E-value=0.34 Score=34.28 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
.|.+.+++++|.++++.+...+.. +...+......+...|+++.|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666666666666554221 344444455556666666666666666665
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.37 E-value=5.2 Score=38.54 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMPVR-------NVVSWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
..++-+|-...+++..+++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677788888888888888742 11122233445556 788888888888865555677777887776
Q ss_pred HHH
Q 044422 244 SAC 246 (519)
Q Consensus 244 ~~~ 246 (519)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 655
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.28 E-value=1.9 Score=42.10 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VRNV----VSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
+.+...++.+..+|.+.|++++|+..|++.. .|+. .+|+.+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456788888999999999999999998865 3443 35888889999999999999999888774
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.26 E-value=1.6 Score=43.47 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 214 (519)
....+.+++.+-+.|-++.|+++-.+-. .-.....+.|+++.|.++.++.. +...|..|.....++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHc
Confidence 4447777777778888887777654321 12455667888888888887765 566888888888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|++++..+++
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 999988888876643 45666777778888877777777776652 344555555667777777666
Q ss_pred HhcC
Q 044422 295 NNMH 298 (519)
Q Consensus 295 ~~~~ 298 (519)
.+..
T Consensus 426 ~~~~ 429 (443)
T PF04053_consen 426 IETG 429 (443)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6543
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.22 E-value=3.6 Score=36.20 Aligned_cols=171 Identities=14% Similarity=0.062 Sum_probs=80.6
Q ss_pred HHHHhCCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 178 TLYSKCRVIIDAYKVFEEMPV--RN----VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
..+...|++++|...|+.+.. |+ ..+.-.++.++.+.|+++.|...++++.+.-......-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344456666666666666542 11 223344555666666666666666665543211111122222222211111
Q ss_pred chHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 252 LGQGRSAHCQTIRMGFFS-----YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
..... .....+ -...+..++.-|=...-..+|...+..+.+.=...--.+..-|.+.|.+..|..-++
T Consensus 93 ~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 93 IPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred Cccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11100 000000 122444444444444445555444444332111112235667889999999999999
Q ss_pred HHHHCCCCCC----HHHHHHHHHHHHccCCHHHHH
Q 044422 327 EMMKQRVKPD----AITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 327 ~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~ 357 (519)
.+.+. -|+ ......++.++.+.|..+.+.
T Consensus 166 ~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 98875 233 235577788888888877543
No 229
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.21 E-value=4.7 Score=37.52 Aligned_cols=224 Identities=10% Similarity=0.064 Sum_probs=119.6
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCHHH-----HHHHHHHHHccC-CchHHHHHHHHHHHc--------CCCCc-----
Q 044422 212 AQEWQVDMCLELYRMMRNSM--LEPNDFT-----FTSILSACTGSG-ALGQGRSAHCQTIRM--------GFFSY----- 270 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g--~~p~~~t-----~~~ll~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----- 270 (519)
.+.|+.+.|..++.+..... ..|+..- +-.+.......+ +++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777765432 2333211 111222233444 777776665554432 12222
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVE---EAVYVFNNMHG--KD-IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVI 344 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~---~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (519)
..++..++.+|...+..+ +|..+++.+.+ ++ +..+-.-+..+.+.++.+.+.+.+.+|...- ......+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 346778888888887754 45555555543 33 4555566677777899999999999998862 22334455555
Q ss_pred HHH---HccCCHHHHHHHHHHHHHcCCCcCHH-HHHH-HHHH-HHHcC--------CHHHHHHHHHhC----CCCCCHHH
Q 044422 345 SSC---RHGGLVEEGKVYFDSMAKHGLKPELD-HYSC-VVDL-LGRAG--------LLEEARDFIKQM----PIYPNAVI 406 (519)
Q Consensus 345 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-li~~-~~~~g--------~~~~A~~~~~~~----~~~p~~~~ 406 (519)
..+ ... ....+...+..+....+.|... .... ++.. +...+ +.+...++++.. ....+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 544 332 3456667777766544555554 2111 1111 11111 144444455532 11111111
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 407 WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
-.++ -.....-+..+.+.++|++|.+.|+--
T Consensus 242 ~~a~----------~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAI----------HTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHH----------HHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1110 012222356778889999999999854
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.19 E-value=2.3 Score=33.80 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
-.+..++.+...|+-+.-.+++.++.+. -.++....-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445566777777777777777777653 3556666777777888888888888888877777753
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.17 E-value=1.9 Score=42.83 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=104.4
Q ss_pred HHHHhcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 209 AAFAQEWQVDMCLELYR--MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
....-.++++.+.++.. ++. ..+ | ..-.+.++..+-+.|..+.|.++...- ..-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI-P-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 44556788888777664 111 112 2 445677888888888888887765332 122355678899
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 287 VEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -|..|+-.|...|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877655 56789999999999999999999988853 2556666677888888888887777766
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
|- ++....++.-.|+.++..+++.+.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 51 5556666677788888888887775
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.17 E-value=7.8 Score=42.40 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT--FLGVISSCRHGGLVEEG 356 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a 356 (519)
+.+.....+++|.-.|+...+- .-.+.+|..+|++++|+.+..+|... -|... --.|+.-+...+++-+|
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 3333444555555555443321 12344555556666665555554321 12111 13445555556666666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 357 KVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-++..+... .| .-.+..|++...|++|..+....
T Consensus 1019 a~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 555555432 11 12344455556666766666555
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.54 Score=44.72 Aligned_cols=120 Identities=15% Similarity=0.055 Sum_probs=79.6
Q ss_pred HHHHHhCCCHHHHHHHHccCCC------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPV------------------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT 238 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 238 (519)
.+.|.+.|++..|...|++... .-..+++.+..++.+.+++..|++..++.+..+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567777888777777666420 123467777888888888888888888887765 566666
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHhcC
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE-AVYVFNNMH 298 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~ 298 (519)
.-.-..+|...|+++.|+..|+.+.+.. +.|..+-+-++.+--+..+..+ ..++|..|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677778888888888888888887764 4444444555544444444332 355555554
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.93 E-value=4 Score=41.77 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=103.5
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH-------HHHHHccCCchHHHH
Q 044422 186 IIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN-SMLEPNDFTFTSI-------LSACTGSGALGQGRS 257 (519)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~l-------l~~~~~~g~~~~a~~ 257 (519)
+++|.++.+. .|.+..|..+.......-.++.|...|-+... .|++.-.. ...+ ...-+--|.+++|++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 3444444433 46677888887777777777777777755533 22221100 0011 111122477888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 044422 258 AHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 332 (519)
+|-.+-+. ...|..+.+.|++-.+.++++.-... -..+|+.+...++....+++|.+.|..-..
T Consensus 756 ~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 77666544 23466777888888888887754332 124677777777777777777777655321
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 333 VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-...+.++.+...++....+...+ +-+....-.+.+++.+.|.-++|.+.+-+.
T Consensus 825 -------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 825 -------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred -------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 112344455544444443333332 334444555556666666666666655544
No 235
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.47 E-value=5.9 Score=37.11 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=79.6
Q ss_pred hhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CC----CHHHHHHHHccCCC-------CChhHHHHHHHHHHhcCC-
Q 044422 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSK--CR----VIIDAYKVFEEMPV-------RNVVSWTAIIAAFAQEWQ- 216 (519)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~- 216 (519)
++....+++.|.+.|++-+..+|-+..-.... .. ....|..+++.|++ ++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888888888877766553333322 22 24578888888873 344456666554 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC--chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 217 ---VDMCLELYRMMRNSMLEPNDF--TFTSILSACTGSGA--LGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 217 ---~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 466778888888878766443 33333333332222 34677888889999988877776655433
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=0.83 Score=41.22 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGL--KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
.|+.-+.. .+.|++..|.+.|....+..- .-....+-.|..++...|++++|..+|..+ -+.+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~------------~k~~P~ 210 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV------------VKDYPK 210 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH------------HHhCCC
Confidence 46665553 455678888888887775320 112233445788888888888888877765 112233
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.|..+..+.-|.....+.|+.++|..+|++..++
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4455667777888888888888888888887765
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.36 E-value=0.2 Score=31.49 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 373 DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
.++..+...|.+.|++++|.+++++. ++.+|+++.++..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~---------------l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA---------------LALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCcCCHHHHHHhh
Confidence 45778899999999999999988865 566777777766654
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.23 E-value=2.3 Score=39.84 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDA--ITFLGVISSCRHGGL--VEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
.+.+..+|+.+.+.|+..+. .....++..+..... ..++..+++.+.+.|+++....|..+.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35566777777777765442 233333332222222 4467778888888888877777765543
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.18 E-value=8.5 Score=37.10 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=24.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
..++.+.|+++............ .++...|.++... +.++++++....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34555666666544433332211 1234444444333 5666666665555543
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=93.16 E-value=2.7 Score=35.03 Aligned_cols=82 Identities=4% Similarity=-0.063 Sum_probs=47.3
Q ss_pred cCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLEL 223 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~ 223 (519)
+.|+++.|..+|..+.-.+ .-+..-+..|..++-..+++++|+..|...- ..|+..+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 5566666666666665544 2244445556666666666666666665432 33444455555666666666666666
Q ss_pred HHHHHH
Q 044422 224 YRMMRN 229 (519)
Q Consensus 224 ~~~m~~ 229 (519)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 655544
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=13 Score=38.63 Aligned_cols=136 Identities=12% Similarity=-0.089 Sum_probs=84.4
Q ss_pred HCCCCCCHHHHHH-----HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---CHHHHHHHHccCCC-
Q 044422 128 RERLKVDASFLST-----AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR---VIIDAYKVFEEMPV- 198 (519)
Q Consensus 128 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~- 198 (519)
.-|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...+|.....-+.+.. +-+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666665544 466667778888888887766321111 1566777766666653 33344455555555
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 199 -RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE----PNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 199 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
....+|..+.+-.-..|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-++..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 45667888888888899999998887543332211 1223355566677777887777776665554
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=2.6 Score=44.05 Aligned_cols=173 Identities=13% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS----ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
...-++...+...++-|+.+-+. .+. |..+...+.. .+.+.|++++|..-|-+-... +.|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 44456666666667777665432 222 3333333333 334567777776655444332 1222 2344
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
-|....+..+-..+++.+.+. +...-..|+.+|.+.++.++-.++.+.-. .|. ..| ....+..|.+.+-.+.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 445555555555556555442 34455667777777777777766665543 221 112 3344556666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
|..+-..... .......+ +-..|++++|.+++..++
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6555443322 23333333 344578899999999886
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=5.8 Score=36.44 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 289 EAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
...+.++....+....--.-.......|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+...--
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 4444444444432222222233445566666666666666554322 233444556666666666666666666542110
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
... +.. .....+++.++...|+.. .+++.+..+|+|...-..|...|...|+.+.|.+.+=.+.
T Consensus 200 ~~~---~~~----------l~a~i~ll~qaa~~~~~~---~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 200 DKA---AHG----------LQAQIELLEQAAATPEIQ---DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred hhH---HHH----------HHHHHHHHHHHhcCCCHH---HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000 100 111233334443333332 3455667888898888999999999999999999776665
Q ss_pred HC
Q 044422 449 DK 450 (519)
Q Consensus 449 ~~ 450 (519)
++
T Consensus 264 ~~ 265 (304)
T COG3118 264 RR 265 (304)
T ss_pred Hh
Confidence 54
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.69 E-value=8.5 Score=35.81 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=76.7
Q ss_pred HHHHHHHHHHccCCchH---HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQ---GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAG 311 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 311 (519)
++..++.++...+..+. |..+++.+... .+....++-.-++.+.+.++.+.+.+++..|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 44555566666555443 33344444322 2223445545555555666677777766666542 22344444443
Q ss_pred H---HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH-H---HHHHcc------CCHHHHHHHHHHHHH-cCCCcCHHHHH
Q 044422 312 Y---AQHGLAVRAIDLFEEMMKQRVKPDAI-TFLGV-I---SSCRHG------GLVEEGKVYFDSMAK-HGLKPELDHYS 376 (519)
Q Consensus 312 ~---~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~l-l---~~~~~~------g~~~~a~~~~~~m~~-~~~~p~~~~~~ 376 (519)
+ .. .....|...++.+....+.|... ....+ + -..... ++++....+++...+ .+-+.+..+-.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 22 23345666666665554554443 11111 1 111121 124555555664442 33344444433
Q ss_pred HHH-------HHHHHcCCHHHHHHHHHh
Q 044422 377 CVV-------DLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 377 ~li-------~~~~~~g~~~~A~~~~~~ 397 (519)
++. ..+.+.+++++|.+.|+-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 332 334567899999998873
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.66 E-value=13 Score=37.68 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCcHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSM-LEPND-----FTFTSILSACTG----SGALGQGRSAHCQTIRMGFFSYIQV 273 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 273 (519)
...++...+-.|+-+.+++.+.+-.+.+ +.-.. .+|..++..++. ..+.+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555556667777766666554322 21111 123333333322 33455666666666654 344333
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 274 AN-SLISMYCKCGNVEEAVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345 (519)
Q Consensus 274 ~~-~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 345 (519)
|. --.+.+...|++++|.+.|+..... ....+--+.-++.-.+++++|.+.|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 32 2234455566677777776654421 11233344445556666666666666666542 223333333333
Q ss_pred HH-HccCCH-------HHHHHHHHHHH
Q 044422 346 SC-RHGGLV-------EEGKVYFDSMA 364 (519)
Q Consensus 346 ~~-~~~g~~-------~~a~~~~~~m~ 364 (519)
+| ...|+. ++|..+|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 22 234444 55555555543
No 246
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.38 E-value=5.7 Score=33.42 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=87.7
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CHHHHHHHHccC
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR--VIIDAYKVFEEM 196 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 196 (519)
.++.++.+.+.|++|+...+..++..+.+.|.+... ..++..++-+|.......+-.+.... -.+-|.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 456667777888999999999999999999886643 34556666666655554443333322 134455555555
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 197 PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 197 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
. ..+..++..+...|++-+|+++.+...... .++ ...++.+..+.+|...-..++....+.
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 246677788888999999998887653322 122 244667777777766666666655543
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.99 E-value=12 Score=35.85 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=156.5
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHccCC---CCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 044422 173 GSSLITLYS--KCRVIIDAYKVFEEMP---VRNVVSWTAIIAA--FAQEWQVDMCLELYRMMRNSMLEPNDF--TFTSIL 243 (519)
Q Consensus 173 ~~~li~~~~--~~g~~~~A~~~~~~m~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll 243 (519)
|..|-.++. -.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 444544443 3577777777766543 4555555555543 4457999999999999976 23322 233344
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhH--HHHHHHHHH---
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVS--WNSMIAGYA--- 313 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~li~~~~--- 313 (519)
-..-+.|..+.|...-+..-..- +--.....+.+...|..|+++.|+++++.-.. +++.- --.|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44467888888888777766543 33356788999999999999999999986543 44421 122332211
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH--
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITF-LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE-- 390 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-- 390 (519)
-.-+...|...-.+..+ +.||-.-- ..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+...
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCcHHHH
Confidence 12345555555444433 56664332 223457889999999999999998754 5444443 223455554221
Q ss_pred HHH--HHHhCCCCCCHH--HHHHH----------------HHhhhcCCCCchhHHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 044422 391 ARD--FIKQMPIYPNAV--IWEAA----------------ESRLLLEPECAATHVQLANLYAGV-RCWDQAARVRKLMKD 449 (519)
Q Consensus 391 A~~--~~~~~~~~p~~~--~~~~~----------------~~~~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~ 449 (519)
... -++.| +||.. ..... +.+....| ....|..|..+-... |+-.++...+-+-.+
T Consensus 315 lkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 111 12233 44422 12111 22222233 345666666665444 888888887777665
Q ss_pred CCC
Q 044422 450 KGL 452 (519)
Q Consensus 450 ~g~ 452 (519)
.--
T Consensus 392 APr 394 (531)
T COG3898 392 APR 394 (531)
T ss_pred CCC
Confidence 533
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.97 E-value=7.5 Score=37.82 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C-CChhHH-HHHHHH
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-G-KDIVSW-NSMIAG 311 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~-~~~~~~-~~li~~ 311 (519)
...|...++...+..-++.|..+|-.+.+.| +.+++.+++++|..++. |+..-|..+|+.-. . +|...| +..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4567788888888888999999999999888 66788899999988774 67888888888433 2 454443 556777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
+...++-..|..+|+..... +..+ ...|..+|+.-..-|++..+..+-++|.+ +-|...+...+...|.-.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 78889999999999855432 2222 45788999988899999988888888877 456666666666666543
No 249
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.97 E-value=13 Score=36.32 Aligned_cols=339 Identities=12% Similarity=0.079 Sum_probs=180.2
Q ss_pred ccCccchhhHHhhhhhcCCC---CCCCchHHHHHHHHHHHhhccccccchhhhcccC---CCCCCCCchhhhhhhhhcCC
Q 044422 39 ISSSKSLHKALRVLDIISPR---TRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDF---TGTNSTFGSSNVFDQLLDTP 112 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 112 (519)
+.+.|++.++..+++.+.+. +.-.-+...|+.++-.+.++ ++-.+ .+.+....+
T Consensus 138 LIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS---------YfLEl~e~~s~dl~pdy----------- 197 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS---------YFLELKESMSSDLYPDY----------- 197 (549)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH---------HHHHHHHhcccccChHH-----------
Confidence 55899999999999887532 12224556666644333222 11111 011111222
Q ss_pred ccCHHHHHHHHHHHhHC------CCCCCHHHHHHHHHHHhcC--CChhhHHHHHHHHHHhCCCChHH-HHHHHHHHHHhC
Q 044422 113 VVDVEKLISMHHDLHRE------RLKVDASFLSTAVTSCGST--RNIRGGAPYQCLAIRTGFIANVY-VGSSLITLYSKC 183 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~ 183 (519)
++.++-...+|... .+-|-......++....-. ....--.+++..-...-+.|+-. +...++..+..
T Consensus 198 ---YemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~- 273 (549)
T PF07079_consen 198 ---YEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS- 273 (549)
T ss_pred ---HHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-
Confidence 22233333333221 2445555555555543322 12222333333333444556543 44555555554
Q ss_pred CCHHHHHHHHccCC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHH-
Q 044422 184 RVIIDAYKVFEEMP--------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI-------LSACT- 247 (519)
Q Consensus 184 g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-------l~~~~- 247 (519)
+.+++..+-+.+. +.=+.++..++....+.++..+|.+.+.-++.- .|+...-.-+ -+..|
T Consensus 274 -~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~ 350 (549)
T PF07079_consen 274 -DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE 350 (549)
T ss_pred -ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc
Confidence 3344333333221 344668888999999999999999888776553 3443321111 12222
Q ss_pred ccC---CchHHHHHHHHHHHcCCCCcHHHHHHHH---HHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHH----HHHH
Q 044422 248 GSG---ALGQGRSAHCQTIRMGFFSYIQVANSLI---SMYCKCGN-VEEAVYVFNNMHG---KDIVSWNSMI----AGYA 313 (519)
Q Consensus 248 ~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li----~~~~ 313 (519)
... +..+-..+|+......+... ..-.-|+ .-+-+.|. -++|+++++.+.+ -|...-|.+. .+|.
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYK 429 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 111 22233445555554432211 1111222 12233343 7788888887764 3444333332 2222
Q ss_pred H---cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 314 Q---HGLAVRAIDLFEEMMKQRVKPDA----ITFLGVISS--CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 314 ~---~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
+ ...+..-+++-+-+.+.|++|-. ..-|.|.+| +...|++.++.-.-.-+.+ +.|++.+|..+.-++..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHH
Confidence 2 23345555555566677877643 334444443 4567888887766555555 78999999999999999
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 385 AGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 385 ~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
..++++|..++..++ |+...|++
T Consensus 508 ~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhhHHHHHHHHHhCC--CchhhHHH
Confidence 999999999999996 56655544
No 250
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.95 E-value=13 Score=36.27 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT-FLGVI 344 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll 344 (519)
..+|-..|+.-.+..-++.|..+|-++.+ +++..++++|.-++ .|+..-|.++|+--... -||... ....+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45777888888888889999999998875 57788999998666 57888999999875543 234333 34556
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 345 SSCRHGGLVEEGKVYFDSMAKHGLKPE--LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.-+...++-+.|..+|+..... +..+ ...|..+|.-=..-|+...+..+=+.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 6677889999999999966532 2223 568999999889999998887766655
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=2.2 Score=39.61 Aligned_cols=161 Identities=11% Similarity=0.074 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHHH
Q 044422 283 KCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF----LGVISSCRHGGLVEE 355 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~g~~~~ 355 (519)
..|++.+|-..++++.+ .|..+++-.=.++..+|+...-...+++.... ..||...| ..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45677777777777765 36677777778888888888888888877654 23333222 233334567788888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
|++.-++..+.+ +.|.-.-.++...+-..|+..++.++..+-.. .|.. -.-.-...|..-...+...+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-----~Wr~------s~mlasHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-----DWRQ------SWMLASHNYWHTALFHIEGA 261 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhccc-----chhh------hhHHHhhhhHHHHHhhhccc
Confidence 888887777643 33555556677777778888888888775521 1111 00112346666777788889
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q 044422 436 CWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 436 ~~~~A~~~~~~m~~~g~~~~~ 456 (519)
.++.|+++|++=.-..++.+.
T Consensus 262 eye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 262 EYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred chhHHHHHHHHHHHHHhhccc
Confidence 999999999876554455554
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.82 E-value=0.35 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+|..|..+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678999999999999999999954
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.76 E-value=1.9 Score=39.57 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-----HGLKPELDHYSC 377 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 377 (519)
.++..++..+...|+++.+...++++.... +-|...|..++.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555566666666665555543 22555555666666666665555555555442 344444444443
Q ss_pred H
Q 044422 378 V 378 (519)
Q Consensus 378 l 378 (519)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.05 E-value=8.5 Score=32.39 Aligned_cols=133 Identities=9% Similarity=0.084 Sum_probs=71.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHhcC
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN--VEEAVYVFNNMH 298 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 298 (519)
.+.+..+.+.+++|+...+..++..+.+.|++... .++...++-+|.......+-.+..... ..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34445555677777777888888888887775543 334444444444333333322222111 233444444433
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 299 GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 299 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+..+++.+...|++-+|.++.+..... +......++++-...++...-..+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24455667777778888887777664322 111224456666666665555555554443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.97 E-value=4.3 Score=32.23 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=50.4
Q ss_pred HHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCc
Q 044422 179 LYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND---FTFTSILSACTGSGAL 252 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~ 252 (519)
+.+..|+++.|++.|.+.. +.....||.-..++.-+|+.++|++-+++..+..-.-+. ..|..-...|-..|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666666666666543 345666777777777777777777766666543211122 2233333345556666
Q ss_pred hHHHHHHHHHHHcC
Q 044422 253 GQGRSAHCQTIRMG 266 (519)
Q Consensus 253 ~~a~~~~~~~~~~~ 266 (519)
+.|..=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666665555
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.75 E-value=20 Score=36.21 Aligned_cols=146 Identities=9% Similarity=0.020 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHhHCC-CCCCH-----HHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCChHHHHHHH-HHHHHhC
Q 044422 115 DVEKLISMHHDLHRER-LKVDA-----SFLSTAVTSCGS----TRNIRGGAPYQCLAIRTGFIANVYVGSSL-ITLYSKC 183 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~ 183 (519)
|-+..++.+....+.+ ++-.. -.|..++..+.. ..+.+.|.+++..+.+. -|+...|... .+.+...
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLK 280 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHh
Confidence 6677777777665532 22111 124444444333 34566778888777665 4555544332 3445567
Q ss_pred CCHHHHHHHHccCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCc---
Q 044422 184 RVIIDAYKVFEEMPV-------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC-TGSGAL--- 252 (519)
Q Consensus 184 g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~--- 252 (519)
|++++|++.|+.... -....+--+.-++.-..+|++|.+.|..+.+.. ..+..+|..+..+| ...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhh
Confidence 888888888886542 122234445556677788888888888887654 33455555544444 345555
Q ss_pred ----hHHHHHHHHHH
Q 044422 253 ----GQGRSAHCQTI 263 (519)
Q Consensus 253 ----~~a~~~~~~~~ 263 (519)
++|.+++.+..
T Consensus 360 ~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 360 KEHKKEAEELFRKVP 374 (468)
T ss_pred hhhHHHHHHHHHHHH
Confidence 66666666554
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.27 E-value=13 Score=33.41 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=34.2
Q ss_pred HhCCCHHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 181 SKCRVIIDAYKVFEEMPV--R----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
.+.|++++|.+.|+.+.. | ...+--.++-++-+.++++.|+..+++....-......-|..-|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345666666666666652 1 122334445566666666666666666655322222233444444443
No 258
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.17 E-value=6.3 Score=29.64 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 150 NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
..++|..|-+++...+-. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 355666677666554422 33333344556788999999999999999999999887754 477888888888888877
Q ss_pred CCCCCCHHHHHH
Q 044422 230 SMLEPNDFTFTS 241 (519)
Q Consensus 230 ~g~~p~~~t~~~ 241 (519)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 77 566666543
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.10 E-value=3.9 Score=37.62 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK-----QRVKPDAITFLG 342 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ 342 (519)
..++..++..+...|+.+.+.+.++.+... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677777777777777777777776542 556777788888888888888777777655 366666665555
Q ss_pred HHHH
Q 044422 343 VISS 346 (519)
Q Consensus 343 ll~~ 346 (519)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.95 E-value=4.1 Score=36.91 Aligned_cols=91 Identities=23% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCc-CHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQR----VKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKP-ELDHYSCV 378 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p-~~~~~~~l 378 (519)
|+.-+. +.+.|++..|...|....+.. ..||. +-.|..++...|+++.|..+|..+.+ .+-.| -+..+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444443 334555666666666666542 22332 33456666666777777666666653 22222 23455556
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 044422 379 VDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~ 398 (519)
..+..+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666677777777666665
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.89 E-value=0.65 Score=29.06 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
.++..|..+|...|++++|.++|++..+.. |+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--PDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCC
Confidence 467789999999999999999999998864 444
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=18 Score=33.39 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=24.4
Q ss_pred hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 146 GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
...|++..|..+|....... +-+...--.+..+|...|+.+.|..++..++
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555554432 1223334444555555555555555555554
No 263
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=23 Score=34.33 Aligned_cols=167 Identities=11% Similarity=-0.080 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHH-
Q 044422 63 TKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTA- 141 (519)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l- 141 (519)
|....+-.+=..|+-.-+....+.+.-..+.+.++......+.+...-....+.+.|+..|++-...+ |+...-.+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHh
Confidence 33333333333455444555566677777777777777777777777766668888888888876543 333322111
Q ss_pred --H----------HHHhcCCChhhHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHH-
Q 044422 142 --V----------TSCGSTRNIRGGAPYQCLAIRT---GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWT- 205 (519)
Q Consensus 142 --l----------~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~- 205 (519)
. .-..+.|++..|.+.+...+.. ..+|+...|-.......+.|+.++|+.--+....-|..-.-
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 1 1123557777777777776643 24455666766677777778888877777766655544222
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHCC
Q 044422 206 --AIIAAFAQEWQVDMCLELYRMMRNSM 231 (519)
Q Consensus 206 --~li~~~~~~~~~~~a~~~~~~m~~~g 231 (519)
.-..++.-.++|++|.+-|++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22345555677777777777765543
No 264
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.08 E-value=5.7 Score=36.44 Aligned_cols=64 Identities=8% Similarity=-0.050 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-GFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
-.++..+...++..+++.+++..-.++|...... +...|...|..+|+.....|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555556666666666666666655554433 333455555555555555555555555444
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.99 E-value=15 Score=34.79 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHH-
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHG-------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPDAITF- 340 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~- 340 (519)
.++..++...+.++++++.|+...+ + ....|..+-+.|.+..++++|.-+..+..+ -++.--..-|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3444555555556666665554332 1 123555566666666666666555444332 1211111111
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHH----HcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 341 ----LGVISSCRHGGLVEEGKVYFDSMA----KHGLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 341 ----~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
-.+.-++...|.+-.|.+.-++.. ..|-.+ -......+.+.|...|+.+.|+.-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122234445555555555544433 233222 1223344555555566666655555544
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=14 Score=38.95 Aligned_cols=149 Identities=9% Similarity=-0.027 Sum_probs=78.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCCh
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~ 217 (519)
.-+....+..-++.|..+- ...+..++. .......+-+.+.|++++|...+-+-...-.. ..+|.-|......
T Consensus 339 ~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHH
Confidence 3444444444555444432 333333332 23334445556678888887776554321111 1245555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-+++|..+-...
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6677777777777754 44445678888888887777666554433 2211 001234444455555555555444433
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.30 E-value=23 Score=33.31 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=106.1
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH----HHHHHHHHcCChH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWN----SMIAGYAQHGLAV 319 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~ 319 (519)
-..|+..+|...++++.+. .|.|...++-.-++|.-.|+...-...++++.. +|...|. ...-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3568888888889888876 477778888888899999999988888888764 4554433 2334556889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 320 RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH---GLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 320 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
+|.+.-++..+-+ +.|...-......+...|+..++.++..+-.+. +...-...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998877654 346666677777788889999999887765431 111112223334445666788899998887
Q ss_pred h
Q 044422 397 Q 397 (519)
Q Consensus 397 ~ 397 (519)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.13 E-value=1.3 Score=26.25 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666653
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.05 E-value=8.1 Score=33.09 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCcCHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA--ITFLGVISSCRHGGLVEEGKVYFDSMAK---HGLKPELDHYSC 377 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ 377 (519)
..+..+..-|++.|+.++|.+.|.++.+....|.. ..+..+|......+++..+...+.+... .|-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667777888888888888888888776544432 3456667777778888888877776653 222222222112
Q ss_pred HHH--HHHHcCCHHHHHHHHHhCC
Q 044422 378 VVD--LLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 378 li~--~~~~~g~~~~A~~~~~~~~ 399 (519)
... .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 2345689999999888773
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.92 E-value=7.3 Score=33.36 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
.+..+...|.+.|+.+.|++.|.++......+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544332222 1234444555555555555555444443
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.46 E-value=39 Score=35.11 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-CCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 044422 132 KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-GFIA--------NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200 (519)
Q Consensus 132 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 200 (519)
.|.+..|..+.......-+++.|++.|-+.... |++. +...-.+=|.+| -|++++|++++-+|..+|
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 578888888888877777788888777544321 2211 111111222222 478888888887776543
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.43 E-value=10 Score=31.84 Aligned_cols=14 Identities=0% Similarity=0.086 Sum_probs=5.6
Q ss_pred cCChHHHHHHHHHH
Q 044422 214 EWQVDMCLELYRMM 227 (519)
Q Consensus 214 ~~~~~~a~~~~~~m 227 (519)
.|+...|...|++.
T Consensus 107 kgdta~AV~aFdei 120 (221)
T COG4649 107 KGDTAAAVAAFDEI 120 (221)
T ss_pred cccHHHHHHHHHHH
Confidence 33344444444333
No 273
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.22 E-value=6.6 Score=36.30 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=72.5
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch-----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 044422 265 MGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-DI-----VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI 338 (519)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (519)
.|.+....+...++..-....+++.+...+-++... +. .+-.+.+.. +-.-++++++.++..=++.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 344555556666666666677888888887777652 11 111222332 23346778999888888899999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
+++.+++.+.+.+++..|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877743
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.70 E-value=0.77 Score=37.75 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
++..+.+.+.++....+++.+...+..-+....+.++..|++.+..+...++++... + .-...+++.+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 345555566666666666666655544456666667777777766666665554110 1 112334444455555
Q ss_pred HHHHHHHHHhc
Q 044422 287 VEEAVYVFNNM 297 (519)
Q Consensus 287 ~~~a~~~~~~~ 297 (519)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555554443
No 275
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.65 E-value=5.9 Score=36.59 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=76.7
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 044422 163 RTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV-RNV-----VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236 (519)
Q Consensus 163 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 236 (519)
..|.+.+..+...++..-....+++.++..+-++.. |+. .+-.+.++.+ -.-++++++.++..=.+-|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 446666777777788777778889999888877752 221 1122233333 234677999998888899999999
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 237 FTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 237 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
.+++.+|..+.+.+++.+|..+.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999887776654
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.47 E-value=37 Score=33.86 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=112.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
|.-.-+..+.+.-.+.-++..+ +.||-.+.- ++-+--......++++++++..+.|-. .+.+....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE~-----------~lg~s~~~ 240 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAY-ILLAEEEASTIVEAEELLRQAVKAGEA-----------SLGKSQFL 240 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHH-hhcccccccCHHHHHHHHHHHHHHHHH-----------hhchhhhh
Confidence 3333444555555555555544 345443221 222223345577888888877765410 00110001
Q ss_pred HHHHHHHHhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 288 EEAVYVFNNMHGKD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-PDAITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 288 ~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
...-..++....++ ..+-..+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111112222222 223344666677889999999999888765322 1234566788888888999988888888
Q ss_pred HHHcCCCcC-HHHHHHHHHHHHHcCCH---------------HHHHHHHHh-CCCCCCHHHHHHHHHhhhcCC------C
Q 044422 363 MAKHGLKPE-LDHYSCVVDLLGRAGLL---------------EEARDFIKQ-MPIYPNAVIWEAAESRLLLEP------E 419 (519)
Q Consensus 363 m~~~~~~p~-~~~~~~li~~~~~~g~~---------------~~A~~~~~~-~~~~p~~~~~~~~~~~~~~~~------~ 419 (519)
-.+...+.+ ...|+..+-.+...++- ..|.+.+.+ +..+|.+.-|-.-.|.+-+.| .
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrG 400 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRG 400 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCC
Confidence 654332222 23455544332222221 112233333 244555554433222222222 2
Q ss_pred CchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 420 CAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 420 ~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
|..+-.--...+..-++.+.|+.++.---+
T Consensus 401 DSEAiaYAf~hL~hWk~veGAL~lL~~twe 430 (539)
T PF04184_consen 401 DSEAIAYAFFHLQHWKRVEGALNLLHCTWE 430 (539)
T ss_pred cHHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence 233332234445555778888888876544
No 277
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.32 E-value=8.7 Score=28.72 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=++.+-++.+....+.|++....+.+++|.+.+|+..|..+++-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444455666666777788999999999999999999999999998765321 224445665554
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.28 E-value=0.57 Score=38.51 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=61.1
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDM 219 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 219 (519)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777777888888888888888776566788889999999999888888888884433 333456666667777777
Q ss_pred HHHHHHHH
Q 044422 220 CLELYRMM 227 (519)
Q Consensus 220 a~~~~~~m 227 (519)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666654
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.19 E-value=6.1 Score=29.83 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=+...-++.+....+.|++......+++|.+.+++..|..+++-++.. ..+....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44455666666777778899999999999999999999999999877543 2333336666654
No 280
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.83 E-value=1.1 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
.+...|..++...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3566789999999999999998863
No 281
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.29 E-value=16 Score=29.92 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC---------CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP---------VRNVVSWTAIIAAFAQEWQ-VDMCLELYRMMRNSMLEPNDFTFTSI 242 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~l 242 (519)
.|.++.-.+.-+++.....+++.+. ..+-.+|+.++.+..+..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555553 2456678888888866665 34567788888887888888889889
Q ss_pred HHHHHccCCch
Q 044422 243 LSACTGSGALG 253 (519)
Q Consensus 243 l~~~~~~g~~~ 253 (519)
|.++.+....+
T Consensus 122 i~~~l~g~~~~ 132 (145)
T PF13762_consen 122 IKAALRGYFHD 132 (145)
T ss_pred HHHHHcCCCCc
Confidence 98887764433
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.26 E-value=7.9 Score=28.93 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 380 (519)
+..++.+-++.+....+.|+.......+++|.+.+++..|.++++-.+ +.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 455666777777777788888888888888888888888888888776 333 24445665543
No 283
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.06 E-value=8.8 Score=29.03 Aligned_cols=61 Identities=10% Similarity=0.203 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVD 380 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 380 (519)
..+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-++ +.| +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 33566666666667778888888888888888888888888888877 333 22226666654
No 284
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.03 E-value=8.2 Score=33.43 Aligned_cols=74 Identities=16% Similarity=0.051 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG---FIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
=+.|.+.|-.+...+.--++.....+...|. ..|.+++.+++...++.. -.+|+..+.+|.+.|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3677888888877775556666655555554 567888888887776642 3567778888888888888887764
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.88 E-value=1.8 Score=24.82 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677899999999999999999998764
No 286
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=84.67 E-value=16 Score=27.96 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
...++|..|.+++...+- ....+--.-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456788888888877663 334444445567788899999866656666788888876644 57888888888888886
Q ss_pred HCCCCCCHHHH
Q 044422 229 NSMLEPNDFTF 239 (519)
Q Consensus 229 ~~g~~p~~~t~ 239 (519)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 666 5555554
No 287
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.58 E-value=22 Score=33.79 Aligned_cols=193 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHc-cC------CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFE-EM------PVR--NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEP---NDFT 238 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~-~m------~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~t 238 (519)
++..+..+.++.|.+++++..-- .| .+. --.+|-.+.+++-+.-++.+++.+-+.-... |..| --..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 45555555666666655543211 11 111 1223444445555555555555544333221 1111 1122
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChh-HH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFF-----SYIQVANSLISMYCKCGNVEEAVYVFNNMH-------GKDIV-SW 305 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~ 305 (519)
..++-.++...+.++.+.+.|+...+.... ....+|-.|.+.|.+..|+++|.-+..+.. -.|.. -|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334556666677777777777666543211 124577777777877777777665444322 12322 12
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 306 -----NSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 306 -----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
-.|.-++-..|+...|.+.-++..+ .|-+|. ......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234456677777777777666543 332221 2233445566777788888777666543
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.43 E-value=2 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+|..++.+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 36778899999999999999999998764
No 289
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=83.96 E-value=26 Score=30.00 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=31.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCC--------------CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGF--------------FSYIQVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
+++..|-+.-++.++.++++.|.+..+ .+.-.+-|.....+.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 455566666677777777776655422 2233344555555555555555555555
No 290
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.81 E-value=20 Score=28.59 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
++..|+.+.|++.|.+...- .+-....||.-.+++.-.|+.++|+.=+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444332 12233444444444444444444444444444
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.96 E-value=2.4 Score=25.66 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677899999999999999999998754
No 292
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=82.59 E-value=25 Score=28.68 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 283 KCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
+.|++++|.+.|+.+... ...+.-.++.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555555555555431 1233344555555666666666666555554
No 293
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.56 E-value=57 Score=32.33 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=103.5
Q ss_pred HHHHHHhHCCCCCCHHH--HHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHH--HHHHHHHHHHhCCCHHHHHHHHccC
Q 044422 121 SMHHDLHRERLKVDASF--LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVY--VGSSLITLYSKCRVIIDAYKVFEEM 196 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 196 (519)
++++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 44556666676665432 234555666777776 344555667655432 1234566777889998888888754
Q ss_pred CCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 197 PVR----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFT--FTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 197 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
... +....+. +...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+ .+.|..++
T Consensus 92 ~~~~~~~~~~g~tp-L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~ 162 (413)
T PHA02875 92 KFADDVFYKDGMTP-LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLD 162 (413)
T ss_pred CcccccccCCCCCH-HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCC
Confidence 321 1112222 33344556654 4444456666654321 12345555667776554444 44443332
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 044422 271 IQ--VANSLISMYCKCGNVEEAVYVFNNMHGKDIV---SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337 (519)
Q Consensus 271 ~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 337 (519)
.. .-.+.+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 11 1122334455667777666666644433221 1224444445566654 44455556766654
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.29 E-value=2.9 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
+-|..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335566777777777777776664
No 295
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.55 E-value=30 Score=28.25 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=11.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
.++.+|.+.+++++|...+++..+
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555555555555554444
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.47 E-value=2.5 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 423 THVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 423 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456789999999999999999998775
No 297
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.10 E-value=66 Score=31.96 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHhHC---CC-CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLISMHHDLHRE---RL-KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~---g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
+.++...++...... |+ ..+......++..+ .|++..+..+++.+...+-..+.. ...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHH
Confidence 567777777765432 44 55666666665543 688888888887765432111221 222
Q ss_pred HHHccC---CCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 191 KVFEEM---PVRNVVSWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 191 ~~~~~m---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
.++... ...+...+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|
T Consensus 214 ~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 214 EALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 222211 12223345556666655 4789999999999999998887655544444443333
No 298
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=79.61 E-value=40 Score=29.16 Aligned_cols=181 Identities=12% Similarity=0.010 Sum_probs=89.0
Q ss_pred CChhhHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----CCChhHHHHHHHHHHhcCChHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFI-ANVYVGSSLITLYSKCRVIIDAYKVFEEMP-----VRNVVSWTAIIAAFAQEWQVDMCLE 222 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~ 222 (519)
+....+...+......... .....+......+...+++..+...+.... ......+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 124555666666666777776666665543 2334455555666666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHccCCchHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 223 LYRMMRNSMLEPNDFTFTSILS-ACTGSGALGQGRSAHCQTIRMGF--FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
.+.........+. ........ .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7766655433321 11222222 56666666666666666644211 01222333333334444555555555554433
Q ss_pred C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 300 K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 300 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
. ....+..+...+...++++.|...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 1 123344444445555555555555555444
No 299
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.61 E-value=4.4 Score=23.21 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577789999999999999999998765
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.54 E-value=33 Score=28.17 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=23.7
Q ss_pred cCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044422 249 SGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK 300 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 300 (519)
.++.+++..+++.|.-.. -.+...++.. -.+...|++.+|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 555555655555554431 0111222222 2344556666666666665543
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.40 E-value=34 Score=28.14 Aligned_cols=89 Identities=7% Similarity=-0.068 Sum_probs=49.0
Q ss_pred hcCCChhhHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCHHHHHHHHccCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 044422 146 GSTRNIRGGAPYQCLAIRTGFIAN---VYVGSSLITLYSKCRVIIDAYKVFEEMPVRN-VVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~ 221 (519)
....+++.+..+++.|.-. .|+ ..++.. ..+...|++++|.++|+++.+.. ...|..-+.++|-.-.-|..+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 3467788888888777543 333 334443 34567888888888888887543 335554444444433333333
Q ss_pred HHH-HHHHHCCCCCCHHH
Q 044422 222 ELY-RMMRNSMLEPNDFT 238 (519)
Q Consensus 222 ~~~-~~m~~~g~~p~~~t 238 (519)
+.+ .++...|-.|+...
T Consensus 97 r~~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 97 HVHADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHHHhCCCHhHHH
Confidence 322 34445544444443
No 302
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=79.38 E-value=41 Score=29.11 Aligned_cols=213 Identities=16% Similarity=0.110 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHccCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 183 CRVIIDAYKVFEEMPV--R---NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS-MLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 183 ~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
.+....+...+..... + ....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555555544432 2 3567788888899999999999988887652 23445567777778888888899999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLIS-MYCKCGNVEEAVYVFNNMHGKD------IVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
..+.........+ ......... .+...|+++.|...+......+ ...+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888754333 122222223 7889999999999998764422 2233333444667889999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 330 KQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 330 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..........+..+...+...+..+.+...+....... |+ ...+..+...+...+..+++...+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 75322135677777788888889999999999888743 43 344444445555677788888777665
No 303
>PRK11906 transcriptional regulator; Provisional
Probab=79.01 E-value=72 Score=31.72 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=60.8
Q ss_pred HHHHHHHHhCC-----CHHHHHHHHccCC---CCC---hhHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCC
Q 044422 174 SSLITLYSKCR-----VIIDAYKVFEEMP---VRN---VVSWTAIIAAFAQ---------EWQVDMCLELYRMMRNSMLE 233 (519)
Q Consensus 174 ~~li~~~~~~g-----~~~~A~~~~~~m~---~~~---~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~ 233 (519)
...+.+..... ..+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++..+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 44555544422 2456777777765 333 3334333332221 122334455555554444 3
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 234 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
-|......+..+..-.++.+.|...|++....+ +....+|....-...-+|+.++|.+.+++..
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 355555555555555666666666666666553 2233334333334444566666666666543
No 304
>PRK09687 putative lyase; Provisional
Probab=78.62 E-value=57 Score=30.36 Aligned_cols=229 Identities=8% Similarity=-0.051 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH----HHHHHHHccC--CCCChhHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI----IDAYKVFEEM--PVRNVVSWTAI 207 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~~l 207 (519)
|.......+.++...|..+.... +..+.. .+|...-...+.+++..|+. +++...+..+ .+++..+-...
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A 111 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASA 111 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHH
Confidence 55555556666666655332222 222322 23445555556666666653 3456666554 34565555555
Q ss_pred HHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 208 IAAFAQEWQV-----DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 208 i~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
+.+++..+.. ..+...+..... .++..+-...+.++++.++. .+...+-.+.+ .++..+-...+.++.
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 5555554321 223333333222 23444445566666666653 34444444433 234445555555555
Q ss_pred hcC-CHHHHHH-HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 283 KCG-NVEEAVY-VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 283 ~~~-~~~~a~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
+.+ ....+.. +...+..++...-...+.++.+.|+. .|...+-...+.+. .....+.++...|.. +|...+
T Consensus 185 ~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred cCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHH
Confidence 542 1223333 33334445666666666677776663 44444444444321 123455666666664 466666
Q ss_pred HHHHHcCCCcCHHHHHHHHHHH
Q 044422 361 DSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 361 ~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+.+. .||..+-...+.++
T Consensus 258 ~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 258 DTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHhh--CCChhHHHHHHHHH
Confidence 666542 23555444444443
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.15 E-value=66 Score=30.84 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKP---ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
....++..+...+.+.|.++.|...+..+...+... ++...-.-.+.+-..|+..+|...++..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345578888888899999999998888887643221 3344445567777788888888877655
No 306
>PRK11906 transcriptional regulator; Provisional
Probab=77.75 E-value=78 Score=31.46 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=67.3
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN-VYVGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 192 (519)
.+..+|.++-++..+.+ +-|+.....+..+..-.++++.|...|++....+ || ..+|-.......-+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36777788887777765 3377777666666677777888888888877653 33 23333333344457888888888
Q ss_pred HccCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHH
Q 044422 193 FEEMPVRN-----VVSWTAIIAAFAQEWQVDMCLELYRM 226 (519)
Q Consensus 193 ~~~m~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~ 226 (519)
+++..+.+ .......++.|+.++ .+.|+.+|-+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 87754322 223333444554443 6666666543
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.60 E-value=6.4 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666665544
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.43 E-value=41 Score=28.07 Aligned_cols=88 Identities=10% Similarity=-0.085 Sum_probs=45.0
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCHHHHHHHHccCCCC--ChhHHHHHHHHHHhcCChHH
Q 044422 145 CGSTRNIRGGAPYQCLAIRTGFIAN---VYVGSSLITLYSKCRVIIDAYKVFEEMPVR--NVVSWTAIIAAFAQEWQVDM 219 (519)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~ 219 (519)
-.+.++.+.++.++..+.-. .|. ..++.. ..+.+.|++.+|+++|+++... ....-.+|+..|....+-..
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34566777777777766543 333 223333 3456678888888888877642 22333444444443332222
Q ss_pred HHHHHHHHHHCCCCCCH
Q 044422 220 CLELYRMMRNSMLEPND 236 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~ 236 (519)
-...-+++.+.+-.|+.
T Consensus 96 Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 96 WRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHhcCCChHH
Confidence 22223344555434433
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.17 E-value=4.7 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 426 QLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 426 ~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47999999999999999999998765
No 310
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.08 E-value=14 Score=28.58 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 376 SCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++|+++|... +......+++ .||......+++.++. ..-|..|+..|...|..++|++++.+..+.
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr----~~N~C~~~~~e~~L~~----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLR----LPNYCDLEEVEEVLKE----HGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHc----cCCcCCHHHHHHHHHH----cCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 3567777777 6666666655 3344444444444422 236888999999999999999999998774
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=1.1e+02 Score=32.57 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
..+....|+.+.-.|++++|-...-.|...+..-|--.+..+...++......++ -......+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-
Confidence 3456667777777777777777777666666666666555555555544433222 110011223344444444433
Q ss_pred CCchHHHH--------------HH----HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 044422 250 GALGQGRS--------------AH----CQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI 302 (519)
Q Consensus 250 g~~~~a~~--------------~~----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 302 (519)
.+...-.+ +. .+..+. .-+...-..|...|...+++..|..++-..+++++
T Consensus 468 ~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 468 SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11111111 00 111111 11223445589999999999999999998887654
No 312
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.84 E-value=99 Score=32.16 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHH--H-HhcCCChhhHHHHHHHHHH-------hCCCChHHHHHHHHHHHHhCC-
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVT--S-CGSTRNIRGGAPYQCLAIR-------TGFIANVYVGSSLITLYSKCR- 184 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g- 184 (519)
...|+..++.....|.. .......++. + .+..+|++.|..++..+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 56788888888777632 1111112222 2 4466788888888888876 44 2334555666666543
Q ss_pred ----CHHHHHHHHccCCC-CChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCchH
Q 044422 185 ----VIIDAYKVFEEMPV-RNVVSWTAIIAAFAQE---WQVDMCLELYRMMRNSMLEPNDFTFTSILSACT--GSGALGQ 254 (519)
Q Consensus 185 ----~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~ 254 (519)
+.+.|..++...-. .++..--.+...+... .+...|.++|...-+.|.. ...-+..++.... -..+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 55667777766542 2222222222222222 3567788888777777632 2222222222222 2336667
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 255 GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
|..+++...+.| .|...--...+..+.. ++.+.+.-.+..+
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 777777777776 3333323333334444 5555544444433
No 313
>PRK09687 putative lyase; Provisional
Probab=75.82 E-value=69 Score=29.84 Aligned_cols=229 Identities=10% Similarity=-0.049 Sum_probs=141.7
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQV----DMCLELYRMMRNSMLEPNDFTFTSI 242 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~t~~~l 242 (519)
.+|..+....+.++...|..+....+..-+..+|...-...+.++++.|+. +++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 456666666777777777654444444444566777777777888888864 4677778777443 4565555566
Q ss_pred HHHHHccCCchH--HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-ChH
Q 044422 243 LSACTGSGALGQ--GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG-LAV 319 (519)
Q Consensus 243 l~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 319 (519)
+.++...+.... -......+...-..++..+-...+.++++.++.+....+...+..+|...-...+.++.+.+ +..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 666665543211 11223333332224467777888889998888665555556666677777777777777653 245
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 044422 320 RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM- 398 (519)
Q Consensus 320 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 398 (519)
.+...+..+.. .+|..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+..+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 66666666664 34666677788889998885 4555555555443 2 234577788888875 566666665
Q ss_pred CCCCCHHHH
Q 044422 399 PIYPNAVIW 407 (519)
Q Consensus 399 ~~~p~~~~~ 407 (519)
.-.||...-
T Consensus 262 ~~~~d~~v~ 270 (280)
T PRK09687 262 YKFDDNEII 270 (280)
T ss_pred hhCCChhHH
Confidence 224454433
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.62 E-value=32 Score=26.00 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|-++-. .+.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 35566666665554421 33333344455667777888877777777777777766533 4566666666666666665
Q ss_pred C
Q 044422 332 R 332 (519)
Q Consensus 332 ~ 332 (519)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.62 E-value=29 Score=30.12 Aligned_cols=74 Identities=8% Similarity=-0.061 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK---HGLKPELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (519)
-+.|.+.|-.+...+.--+......|. .|....+.+++.+++.+..+ .+-.+|+..+.+|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356777777777665443444444444 34446777888888777764 233577788888888888888887774
No 316
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.84 E-value=66 Score=29.16 Aligned_cols=165 Identities=13% Similarity=0.197 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGK------DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPDAITFLGV 343 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~l 343 (519)
...|+.-+ .-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|...+++..+.- -.|| .-|...
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 34444433 334568888888888877642 22344556667778888888888888876643 3333 234444
Q ss_pred HHHHHcc-------CCHHHHHHHH---HHHHH----cCCCcCHHHH------------HHHHHHHHHcCCHHHHHHHHHh
Q 044422 344 ISSCRHG-------GLVEEGKVYF---DSMAK----HGLKPELDHY------------SCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 344 l~~~~~~-------g~~~~a~~~~---~~m~~----~~~~p~~~~~------------~~li~~~~~~g~~~~A~~~~~~ 397 (519)
|.+++.- .+...+...+ +++.+ ....||...- ..+.+-|.+.|.+..|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4444321 2333344443 33332 2233333221 1234566777777777777766
Q ss_pred CC-CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 398 MP-IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 398 ~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
|- .-|+ .+....++..+..+|...|..++|.+.-+-+...
T Consensus 193 v~e~y~~-------------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 193 VLENYPD-------------TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHhcccc-------------ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 61 1111 1112235566889999999999999987776554
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.61 E-value=9.8 Score=21.73 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555666666655555544
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.56 E-value=65 Score=29.00 Aligned_cols=56 Identities=7% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAKHG---LKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
|...|-.+....++..|...++.-.+.+ -.-+..+...|+.+|- .|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 3334444555566666666666643311 1224455555665553 455666555543
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.24 E-value=74 Score=29.46 Aligned_cols=68 Identities=18% Similarity=0.106 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH-----
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK----- 448 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~----- 448 (519)
+++...+.|..+|.+.+|.++.+.. +.++|.+...+-.|+..|+..|+--.|.+-+++|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~---------------ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRA---------------LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH---------------hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 3455667888999999999877754 56777777888889999999999888888888874
Q ss_pred HCCCCCCC
Q 044422 449 DKGLKTNP 456 (519)
Q Consensus 449 ~~g~~~~~ 456 (519)
+.|+..+.
T Consensus 346 elgi~vdd 353 (361)
T COG3947 346 ELGIDVDD 353 (361)
T ss_pred HhCCCcch
Confidence 34665554
No 320
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.16 E-value=1.1e+02 Score=31.37 Aligned_cols=347 Identities=10% Similarity=0.031 Sum_probs=186.1
Q ss_pred cchhhhcccCCCCCCCCc-hhhhhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHh-cCCChhhHHHHHHH
Q 044422 83 LDSQKFNHDFTGTNSTFG-SSNVFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSCG-STRNIRGGAPYQCL 160 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~ 160 (519)
..++...+.+...-|... .+..+.. .....+..+.+..+|++-++ |++-+...|...+..+. ..|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~-~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFAD-YEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344444555554444433 2222222 22445588999999999886 57777777777766655 45788888888888
Q ss_pred HHHh-CCC-ChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh---c------CChHHHHHHHHHHHH
Q 044422 161 AIRT-GFI-ANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ---E------WQVDMCLELYRMMRN 229 (519)
Q Consensus 161 ~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~---~------~~~~~a~~~~~~m~~ 229 (519)
.+.. |.. .+...|...|..-..++++.....++++..+--...|+....-|.+ . ...+++.++-.....
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~ 219 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAE 219 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHh
Confidence 8764 322 3455788888888889999999999998875444444443333322 1 112333222221111
Q ss_pred C----CCCCCHHHHHHHHH------------------HHHc-------cCCchHHHHHHHHHHHc---CC----CCcHHH
Q 044422 230 S----MLEPNDFTFTSILS------------------ACTG-------SGALGQGRSAHCQTIRM---GF----FSYIQV 273 (519)
Q Consensus 230 ~----g~~p~~~t~~~ll~------------------~~~~-------~g~~~~a~~~~~~~~~~---~~----~~~~~~ 273 (519)
. -..+.......-+. .+.. .-...+....++.-.+. .+ +++..+
T Consensus 220 ~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~n 299 (577)
T KOG1258|consen 220 RSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKN 299 (577)
T ss_pred hhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHH
Confidence 0 00011111111111 1110 00111111111111111 11 235668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 044422 274 ANSLISMYCKCGNVEEAVYVFNNMHGKDI---VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV--KPDAITFLGVISSCR 348 (519)
Q Consensus 274 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~ 348 (519)
|..-+.--.+.|+.+.+.-+|+.+.-|-. ..|-..+.-.-..|+.+-|..++....+-.. +|....+.+.+ +-
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e 377 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EE 377 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HH
Confidence 88888888899999999998888775421 2333333333344777777777666554322 23333333322 34
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHHHcCCHHHHH---HHHHhC---CCCCCH-----------------
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPELDH-YSCVVDLLGRAGLLEEAR---DFIKQM---PIYPNA----------------- 404 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~~---~~~p~~----------------- 404 (519)
..|++..|..+++.+...- |+... -..-+....+.|..+.+. +++... ...+..
T Consensus 378 ~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 4678888888888887542 44322 122233445566666665 333332 111111
Q ss_pred ---HHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 405 ---VIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 405 ---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
.....+.+++...|++...|..++......+
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 1124556666777888888888887776665
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.82 E-value=8.8 Score=28.54 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 407 WEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
...+++.+..+|+|......|...+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 356678889999999999999999999999999999988887764
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.84 E-value=29 Score=30.52 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
+..++.+.+.+.+.+++...++-.+.. +.|..+-..+++.+|-.|++++|..-++..-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344555555666666666555554442 1233344445555666666666655555444
No 323
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.79 E-value=2.1 Score=34.08 Aligned_cols=33 Identities=3% Similarity=-0.016 Sum_probs=23.1
Q ss_pred CCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 044422 111 TPVVDVEKLISMHHDLHRERLKVDASFLSTAVTSC 145 (519)
Q Consensus 111 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 145 (519)
+.-++-.+|..+|.+|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3334667788888888888887765 66666554
No 324
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=70.71 E-value=1.2e+02 Score=30.45 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 240 TSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 240 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
..+..++-+.|+.++|.+.+.++.+.. ......+...|++++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 445556667788888888888776542 22345577788888888888888888777654
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.38 E-value=63 Score=27.00 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=22.2
Q ss_pred HccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 247 TGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
.+.++.+++..+++.+.-.. -.+...++.. ..+...|++.+|.++|+++.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555554432 0111122222 233445555555555555543
No 326
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.89 E-value=85 Score=28.32 Aligned_cols=201 Identities=11% Similarity=0.075 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC--hhHHHHHHHHHHh
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN--VVSWTAIIAAFAQ 213 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~ 213 (519)
..|.....+|....++++|..-+....+. ...|...|+ ...-++.|.-+.+++..-+ +..|+--...|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555666777788888888866655432 222332222 2334455666666665422 3345666677777
Q ss_pred cCChHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 044422 214 EWQVDMCLELYRMMRN--SMLEPNDF--TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~--~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 289 (519)
+|.++.|-..+++.-+ .++.|+.. .|..-+...-..++...|. ..+..+-..+.+..++.+
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhHHhhH
Confidence 7777777666665432 22344431 2222222222222222222 234445556677777777
Q ss_pred HHHHHHhcCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 290 AVYVFNNMHG--------KDI-VSWNSMIAGYAQHGLAVRAIDLFEEMMKQR---VKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 290 a~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
|-..|.+-.. ++. ..|-..|-.+.-..++..|.+.+++-.+.+ -.-+..+...|+.+|- .|+.+.+.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 6655554332 111 235555666677778999999988855543 1224667778887764 57777665
Q ss_pred HHH
Q 044422 358 VYF 360 (519)
Q Consensus 358 ~~~ 360 (519)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 553
No 327
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.67 E-value=36 Score=25.01 Aligned_cols=66 Identities=5% Similarity=0.005 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHH
Q 044422 154 GAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
+.++++.+.+.|+- +......+-.+-...|+.+.|..++..++ +.+..|..+++++...|+-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666632 33333333333335577778888888877 77777888888877777655543
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.59 E-value=23 Score=30.11 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHH
Q 044422 353 VEEGKVYFDSMAKHGLKPELDH---YSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLAN 429 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~ 429 (519)
++.|.+..+.-...+ +.|... |...+.-++...+..++.+++++. ..-+++++.++|+...++..+..
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedA--------isK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDA--------ISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHH--------HHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHH--------HHHHHHHHhcCCchHHHHHHHHH
Confidence 344555555433322 334443 344455556666777888888765 25578899999999999999999
Q ss_pred HHhccCC-----------HHHHHHHHHHHHHCCCCCCC
Q 044422 430 LYAGVRC-----------WDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 430 ~~~~~g~-----------~~~A~~~~~~m~~~g~~~~~ 456 (519)
+|...+. +++|.+.|++..+. .|+.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~n 113 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNN 113 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCc
Confidence 9988763 44555555554443 3554
No 329
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.99 E-value=54 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLI 177 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (519)
|-=+..+-++.+...++.|++......+++|.+.+|+..|..+|+-++.. ..+...+|-.++
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 33344555556666677888888888888888888888888888766432 233333455444
No 330
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=1e+02 Score=28.46 Aligned_cols=192 Identities=10% Similarity=0.069 Sum_probs=105.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHccCCchHHHHHHHHHH----HcCCCCcHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDF-------TFTSILSACTGSGALGQGRSAHCQTI----RMGFFSYIQVAN 275 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~ 275 (519)
+.+...+.+++++|+..+.+....|+..|.. |...+...|...|+.....+...... ...-+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455677888999999999998888776654 44556777888887766554443322 222233445556
Q ss_pred HHHHHHHhcC-CHHHHHHHHHhcCC----C-----ChhHHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCCCHHHHH
Q 044422 276 SLISMYCKCG-NVEEAVYVFNNMHG----K-----DIVSWNSMIAGYAQHGLAVRAIDLFEE----MMKQRVKPDAITFL 341 (519)
Q Consensus 276 ~li~~~~~~~-~~~~a~~~~~~~~~----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~ 341 (519)
+|++.+-... .++..+.+.....+ . -...-.-+|..+.+.|.+.+|+.+... +.+..-+|+-.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 6666655443 35555555443332 1 112234578888999999999887654 44444555544433
Q ss_pred HHH-HHHHccCCHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHHH--HcCCHHHHHHHHHhC
Q 044422 342 GVI-SSCRHGGLVEEGKVYFDSMAK----HGLKPELDHYSCVVDLLG--RAGLLEEARDFIKQM 398 (519)
Q Consensus 342 ~ll-~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 398 (519)
.+= .+|-....+.++..-+...+. .-++|-...---|+.+.. ...++..|..+|-+.
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 332 234444455544444443331 113343333333444433 334566666655443
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.71 E-value=88 Score=27.66 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHH--HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDI-VSWNSMIA--GYAQHGLAVRAIDLFEEMMKQR-VKPDAITFLGVIS 345 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~ 345 (519)
-..+||-|.-.+...|+++.|.+.|+...+-|+ .-|..+=+ ++.-.|++.-|.+=+-..-+.. -.|=...|..+..
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 367888888888899999999999998876443 22322222 2344688888887666655543 2332333333332
Q ss_pred HHHccCCHHHHHHHH-HHHHHcCCCcCHHHHHHH-HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchh
Q 044422 346 SCRHGGLVEEGKVYF-DSMAKHGLKPELDHYSCV-VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAAT 423 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 423 (519)
..-++.+|..-+ ++... .|..-|... +.-|.-.=..+.+.+-..... .|...+... -..+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a--~~n~~~Ae~---------LTEt 239 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETLMERLKADA--TDNTSLAEH---------LTET 239 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc--cchHHHHHH---------HHHH
Confidence 334555555433 33322 233334332 222222212222222222211 122222110 1358
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 424 HVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 424 ~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|.-|..-|...|+.++|..+|+......
T Consensus 240 yFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 240 YFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 8889999999999999999999877654
No 332
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.50 E-value=17 Score=20.47 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
|..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 333
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.57 E-value=72 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 339 TFLGVISSCRHGGL-VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 339 t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
.|.+++.+.+...- --.+..+|+-|++.+.++++.-|..++.++.+
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 34444444433333 22233444444444444444444444444433
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.53 E-value=85 Score=28.89 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH---
Q 044422 309 IAGYAQHGLAVRAIDLFEEMMKQ--RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG--- 383 (519)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--- 383 (519)
|.+++..|++.+++...-+--+. .++|.. .-..|-.|.+.+.+..+.++-..-.+..-.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56667777777766654443332 233333 33333346677777666666555543211112222554444443
Q ss_pred --HcCCHHHHHHHHH
Q 044422 384 --RAGLLEEARDFIK 396 (519)
Q Consensus 384 --~~g~~~~A~~~~~ 396 (519)
-.|.+++|++++.
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 3577777777764
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.35 E-value=1.1e+02 Score=28.36 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHH
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQC 159 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 159 (519)
...|.++|.-+.++.- -+.+=..++..+....+..+|...+.
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHH
Confidence 4667888887776532 23344456666666666666655544
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.53 E-value=28 Score=30.59 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 243 LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 243 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
++.+.+.+.+.++......-.+.. +.+...-..+++.||-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444444444444444433332 3334444445555555555555544444
No 337
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.56 E-value=1.6e+02 Score=29.13 Aligned_cols=210 Identities=13% Similarity=0.044 Sum_probs=110.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCCHHHHHHHHccCCCCChh--HHHHHHHHHHhcCCh
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYV--GSSLITLYSKCRVIIDAYKVFEEMPVRNVV--SWTAIIAAFAQEWQV 217 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~~~~ 217 (519)
+...++.|+.+.+. .+.+.|..|+... ..+.++..++.|+.+-+.-+++.-..++.. ....-+...+..|+.
T Consensus 6 L~~A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 6 LCDAILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHHHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 33445667776544 4445677666543 344566777889988777666654333221 112334555678888
Q ss_pred HHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCCHHHHHH
Q 044422 218 DMCLELYRMMRNSMLEPNDF---TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQV--ANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~ 292 (519)
+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 77666554 33211110 0123344455666654 4455556665554321 1244556667888887777
Q ss_pred HHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 293 VFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF---LGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 293 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
+++.-... |..-++.+ ...+..|+.+ +.+.+.+.|..|+...- .+++...+..|..+ +.+.+.+.
T Consensus 154 Ll~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred HHhcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 77654332 22222233 3344556654 44556667776654321 23444344556654 45555667
Q ss_pred CCCcCH
Q 044422 367 GLKPEL 372 (519)
Q Consensus 367 ~~~p~~ 372 (519)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 766654
No 338
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.17 E-value=67 Score=25.52 Aligned_cols=72 Identities=10% Similarity=0.208 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 319 VRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+..+-++.+....+.|+......-+.+|.+.+++..|.++|+-++.. +.+....|-.++ ++...+++++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH---------HHHHHHHHHh
Confidence 345556666666778888888888888888888888888888887742 223333455443 3444555665
Q ss_pred CC
Q 044422 399 PI 400 (519)
Q Consensus 399 ~~ 400 (519)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.09 E-value=23 Score=20.03 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+|..+...|...|++++|...|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555666666666555544
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.69 E-value=12 Score=19.97 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+|..+...+...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677899999999999999999887653
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.78 E-value=21 Score=22.32 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=12.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555544
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.50 E-value=43 Score=21.95 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 425 VQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 425 ~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..|..++.+.|++++|.+..+.+.+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44788999999999999999998874
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.79 E-value=1e+02 Score=28.37 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=8.3
Q ss_pred HHHHHhcCChHHHHHHH
Q 044422 208 IAAFAQEWQVDMCLELY 224 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~ 224 (519)
|.+++..++|.+++...
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 44455555555554443
No 344
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.68 E-value=73 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.530 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
-|..++.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777665
No 345
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.67 E-value=1.8e+02 Score=28.86 Aligned_cols=101 Identities=14% Similarity=0.004 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM---HGKDIVSWNSMI 309 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li 309 (519)
..+......++..+ .|+...+..+++.+...+...+. +...+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554433 67777777777766543212222 1222222211 112222344445
Q ss_pred HHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 310 AGYAQ---HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG 351 (519)
Q Consensus 310 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (519)
+++.+ .++.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55544 4778888888888888887776554444444444443
No 346
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.38 E-value=1.1e+02 Score=26.11 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH-HHHHH--
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD-HYSCV-- 378 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l-- 378 (519)
..|..-+. +++.++.++|+.-|.++.+.|..-=.. .-..........|+...|...|+++-...-.|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33433333 567788889999999888876441111 11122234567788889999999887543333222 11112
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
.-.+...|.++....-++.+-...+ ++ ...+-..|.-+-.+.|++.+|.+.|+.+...-.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n--~m------------R~sArEALglAa~kagd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGN--PM------------RHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCC--hh------------HHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence 2235667888888887777631111 11 122444578888899999999999998876433
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.36 E-value=66 Score=23.68 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHH
Q 044422 283 KCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 321 (519)
..|+.+.|.++++.+. ..+..|..+++++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 6666666666666666655444
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=1.6e+02 Score=30.47 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=93.3
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 317 (519)
.-+.+...+-+.|..++|.++ .+|... -.+...+.|+++.|.++..+. .+..-|..|.++..+.|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhccc
Confidence 445566667777777666553 222211 123345778888888876654 356789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
+..|.+.|.+... |..|+-.+...|+-+....+-....+.|. .|.-..+|...|+++++.+++..
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 9999999887653 45566667778887766666666666652 23345567788999999999887
Q ss_pred CCCCC
Q 044422 398 MPIYP 402 (519)
Q Consensus 398 ~~~~p 402 (519)
-+.-|
T Consensus 747 t~r~p 751 (794)
T KOG0276|consen 747 TQRLP 751 (794)
T ss_pred cCcCc
Confidence 64333
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.60 E-value=1.2e+02 Score=30.12 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=75.8
Q ss_pred HHHHccCCchHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH
Q 044422 244 SACTGSGALGQGR-SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAV 319 (519)
Q Consensus 244 ~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 319 (519)
.-.-..|++..|. +++..+....-.|+.....+.| +...|+++.+...+....+ .+..+-.+++....+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 3334456665554 4555555544455544444433 4566888888888776554 46667788888888888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 320 RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 320 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+|..+-+-|....+. |..............|-++++...|+++..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 998888888876655 333333333334455677888888877764
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.50 E-value=1.5e+02 Score=27.16 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHH-hcCCChhhHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCHHHHHHHHccCC--------
Q 044422 130 RLKVDASFLSTAVTSC-GSTRNIRGGAPYQCLAIRTGFIAN---VYVGSSLITLYSKCRVIIDAYKVFEEMP-------- 197 (519)
Q Consensus 130 g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-------- 197 (519)
+-.||...=|.--.+- .+..+++.|..-|+..++..-..- -.....+|..+.+.|++++....+.++.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455555433332221 133477788888887776431111 2234556777788888888777777764
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHccCCchHHHHHHHHHHHcCC----
Q 044422 198 -VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS--MLEPND---FTFTSILSACTGSGALGQGRSAHCQTIRMGF---- 267 (519)
Q Consensus 198 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---- 267 (519)
..+.-+.|++++--..+.+.+-..++|+.-... ..+-+. .|-+-|...|...|.+....+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 234456677777666666666655555443221 001111 1334456666666777777777766654311
Q ss_pred C-------CcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 268 F-------SYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 268 ~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
. .-..+|..-|..|....+-.+...+|++.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 1 11335555566666655555555555543
No 351
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.36 E-value=46 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
|-..++..+++.|.+.|+..+...|..++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44444444444444444444444444433
No 352
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.33 E-value=1.3e+02 Score=30.97 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKV 192 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~ 192 (519)
..+.+.+.+-+.|-.++|+.+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc
Confidence 445556666666666666544
No 353
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.29 E-value=1.2e+02 Score=28.30 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh----------cCChHHHHHHHH
Q 044422 156 PYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ----------EWQVDMCLELYR 225 (519)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~----------~~~~~~a~~~~~ 225 (519)
++|..+.+.++.|.-..+.-+--.+...=.+...+.+|+.+.. |..-|..|+..||. .|++...+++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 4666666666777666666666666666666777777766653 11115555554443 466666666553
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.23 E-value=2.7e+02 Score=29.42 Aligned_cols=190 Identities=13% Similarity=0.120 Sum_probs=106.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCC--HHHHHHHHHHHH-ccCCchHHHHHHHHHHHcCCCCcH---
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMR-NSMLEPN--DFTFTSILSACT-GSGALGQGRSAHCQTIRMGFFSYI--- 271 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~--~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~--- 271 (519)
.+...|..||.. |++.++-.. +..++|. ..++-.+...+. .+.+++.|+..+++.....-.++.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345556666553 444555554 3334443 234555555554 677888888888766443222221
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCC---CCCCH
Q 044422 272 --QVANSLISMYCKCGNVEEAVYVFNNMHGK--------DIVSWNSM-IAGYAQHGLAVRAIDLFEEMMKQR---VKPDA 337 (519)
Q Consensus 272 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~ 337 (519)
.....++..+.+.+... |...+++..+. -...+.-+ +..+...++...|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12345566666666555 77777654421 11223333 222333479999999998876532 33444
Q ss_pred HHHHHHHHHHH--ccCCHHHHHHHHHHHHHcC---------CCcCHHHHHHHHHHHH--HcCCHHHHHHHHHhC
Q 044422 338 ITFLGVISSCR--HGGLVEEGKVYFDSMAKHG---------LKPELDHYSCVVDLLG--RAGLLEEARDFIKQM 398 (519)
Q Consensus 338 ~t~~~ll~~~~--~~g~~~~a~~~~~~m~~~~---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 398 (519)
.++..++.+.. +.+..+.+.+.++.+.... ..|...+|..+++.++ ..|+++.+...++.+
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556666544 4455666777777664211 2345667777776654 567777777766655
No 355
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.12 E-value=92 Score=24.00 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..++|..+.+.+...+. ....+--+-+..+.+.|++++|+..=.....||...|-++ +-.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 34566666666666552 3333444444555666666666333233333555555444 33455666666665555544
Q ss_pred CC
Q 044422 331 QR 332 (519)
Q Consensus 331 ~~ 332 (519)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 356
>PRK14700 recombination factor protein RarA; Provisional
Probab=56.06 E-value=1.8e+02 Score=27.29 Aligned_cols=141 Identities=10% Similarity=0.030 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHhHC-------CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHH
Q 044422 115 DVEKLISMHHDLHRE-------RLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVII 187 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 187 (519)
+.++...++++.... .+..+......++.. ..||...|+..++.+.......+. . . =..+
T Consensus 40 ~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~-~---~-------it~~ 106 (300)
T PRK14700 40 SLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDE-I---Y-------LNKE 106 (300)
T ss_pred CHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCC-C---c-------cCHH
Confidence 455666666665542 255677777777665 568999999988886532100000 0 0 0122
Q ss_pred HHHHHHccCC---CCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch-----HHH
Q 044422 188 DAYKVFEEMP---VRNVVSWTAIIAAFAQE---WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG-----QGR 256 (519)
Q Consensus 188 ~A~~~~~~m~---~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-----~a~ 256 (519)
...++..+-. ..+-..+..+|++|.++ .+.+.|+-.+-+|.+.|..|.-..-..++-++-.-|.-+ .|.
T Consensus 107 ~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~ 186 (300)
T PRK14700 107 LFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAM 186 (300)
T ss_pred HHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 2233332211 23444555667777664 789999999999999998887777766777666666432 344
Q ss_pred HHHHHHHHcCCC
Q 044422 257 SAHCQTIRMGFF 268 (519)
Q Consensus 257 ~~~~~~~~~~~~ 268 (519)
..++.....|.+
T Consensus 187 aa~~A~~~iG~P 198 (300)
T PRK14700 187 DAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHhCCh
Confidence 445555555543
No 357
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.54 E-value=72 Score=31.35 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
+.-.|++..+-.|++..|.+.++.+.+.... .|. +..+-...+|..++-+|...++|.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~-l~~------~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKG-LYT------KVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccch-hhc------cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888899999999999988654332 222 1223456788889999999999999999999853
No 358
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.04 E-value=3e+02 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHhcCCC
Q 044422 272 QVANSLISMYCKCG--NVEEAVYVFNNMHGK 300 (519)
Q Consensus 272 ~~~~~li~~~~~~~--~~~~a~~~~~~~~~~ 300 (519)
.-...++.+|++.+ ++++|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34455666666666 566666666666544
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.94 E-value=1.3e+02 Score=26.29 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=51.7
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCH-----HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPEL-----DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA 421 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (519)
+.+.|++++|..-|...++. +++.. ..|..-.-++.+.+.++.|.+-.. +++++.|...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcs---------------Kaiel~pty~ 168 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCS---------------KAIELNPTYE 168 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHH---------------hhHhcCchhH
Confidence 44567777777777777763 22221 122223344555566666554333 3344555444
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 422 ATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 422 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.+...-..+|-+..++++|+.-|+.+.+.
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 45555567777888888888888877665
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.72 E-value=3e+02 Score=29.48 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=17.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
.|+..|...+++..|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 37778888888888888775554
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.60 E-value=1.7e+02 Score=26.75 Aligned_cols=58 Identities=9% Similarity=0.057 Sum_probs=29.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC----C-------HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKP----D-------AITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~-------~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
.+...|...|.+.+..++++++.+.-..- | ...|..=|+.|....+-.+...++++..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34445555555666666666554321100 1 1245555566666666566666666554
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.98 E-value=1.8e+02 Score=26.87 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=74.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCcCHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI-------TFLGVISSCRHGGLVEEGKVYFDSMA----KHGLKPELDHYS 376 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~ 376 (519)
+..-..+.+++++|...+.+....|+..|.. +..-+.+.|...|+.....+...... +..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445667888999999999999888776654 45556777888887766555544332 222222334444
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 377 CVVDLLGRA-GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 377 ~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.|+..+-.. ..++.-.++.... ..|..-++..-+ ....-.-++..+.+.|+|.+|+........
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~------iewA~rEkr~fL---r~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTAL------IEWADREKRKFL---RLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHH------HHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 555544332 2344444443322 112110000000 000112268899999999999988765543
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.50 E-value=1.5e+02 Score=29.52 Aligned_cols=123 Identities=19% Similarity=0.148 Sum_probs=79.7
Q ss_pred HHHHHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC
Q 044422 308 MIAGYAQHGLAVRAID-LFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG 386 (519)
Q Consensus 308 li~~~~~~g~~~~A~~-~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (519)
-|.-....|++..|.+ ++.-++...-.|+..-....| +...|+++.+.+.+...... +..+..+..++++.....|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 3444456788777766 444555544556655444443 56889999999888776643 4456778889999999999
Q ss_pred CHHHHHHHHHhCC---C-CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 387 LLEEARDFIKQMP---I-YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 387 ~~~~A~~~~~~~~---~-~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
++++|..+-+-|- + .|...+. -....-..|-++++.-.+++.....-
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~i-------------------aa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTV-------------------AAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheee-------------------ecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9999999888771 1 1211111 12233445677888888888766543
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.39 E-value=1.9e+02 Score=26.56 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=77.7
Q ss_pred hCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHccCCch-HHH
Q 044422 182 KCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLE----LYRMMRNSMLEPNDFTFTSILSACTGSGALG-QGR 256 (519)
Q Consensus 182 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~ 256 (519)
+++++++|++++.. =...+.+.|+...|-+ +++-..+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34555666555432 2234455555544433 3334445566667666666666665543222 222
Q ss_pred HHHHHHHH---cCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 257 SAHCQTIR---MGF--FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 257 ~~~~~~~~---~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
.+.+.+.+ .|- .-+......+...|.+.+++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 33333332 221 235678888999999999999999887655444444443333333333333322
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 332 RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 332 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
|...-..++ -|...+++..|...++...+
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222222233 35556788888887776664
No 365
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=52.16 E-value=18 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=18.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCc
Q 044422 479 RLSEILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 479 ~~~~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
...++.+.+++..++++..|+.||.
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDi 30 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDI 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----E
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 4567888999999999999999998
No 366
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.82 E-value=31 Score=31.98 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLG 342 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 342 (519)
.-||..|....+.||+++|+.++++..+.|+.--..||-.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3467888888888888888888888888887655555543
No 367
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.36 E-value=1.8e+02 Score=26.10 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 293 VFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 293 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
+|+-..+|.+.....++..|. .+++++|.+++.++.+.|+.|... .+.+..+
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 444444566666666665444 456777777777777777766543 3334443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.25 E-value=55 Score=23.57 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=29.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHHcCCHHHHHHH
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPE--LDHYSCVVDLLGRAGLLEEARDF 394 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 394 (519)
.....++|...|....+.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777765332222 13456677777888877777665
No 369
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.15 E-value=2.8e+02 Score=28.05 Aligned_cols=198 Identities=10% Similarity=0.043 Sum_probs=90.2
Q ss_pred HHHHHHhHCCCCCCHHH--HHHHHHH-----HhcCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHHHH--hCCCHHHH
Q 044422 121 SMHHDLHRERLKVDASF--LSTAVTS-----CGSTRNIRGGAPYQCLAIRTGFIANVYV--GSSLITLYS--KCRVIIDA 189 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~--~~g~~~~A 189 (519)
++++.+.+.|..|+... ..+.+.. +...++.+ +.+.+.+.|..++... -.+.+...+ ..|+.+-.
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv 124 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIV 124 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHH
Confidence 45556666676555432 1223333 44445544 3444456665443221 122334444 67777777
Q ss_pred HHHHccCCCC---ChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCchHHHHHHHHH
Q 044422 190 YKVFEEMPVR---NVVSWTAIIAAFAQEW--QVDMCLELYRMMRNSMLEPNDFT--FTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 190 ~~~~~~m~~~---~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..+++.-... +...++. +...+..| +.+ +++.+.+.|..++... -.+.+...+..|+.+-+ +.+
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv----~~L 195 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENL-LHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVI----KFL 195 (480)
T ss_pred HHHHHcCCCCCccCCCCCcH-HHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHH----HHH
Confidence 7776654332 2223333 33444555 333 3344455665554322 12344555566654443 344
Q ss_pred HHcCCCCcH--------HHHHHHHHHHHhcCC--HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 263 IRMGFFSYI--------QVANSLISMYCKCGN--VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 263 ~~~~~~~~~--------~~~~~li~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
.+.|..++. ..+.+.+...+..|+ .+-+.-+++.-.. +|..-.+.+. ..+..|+. ++++.+.
T Consensus 196 l~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~-~A~~~~~~----~iv~~Ll 270 (480)
T PHA03100 196 LDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLH-YAVYNNNP----EFVKYLL 270 (480)
T ss_pred HHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHH
Confidence 444543331 122444555556666 5555555554222 2222222332 23344553 3444455
Q ss_pred HCCCCCC
Q 044422 330 KQRVKPD 336 (519)
Q Consensus 330 ~~~~~p~ 336 (519)
+.|..|+
T Consensus 271 ~~gad~n 277 (480)
T PHA03100 271 DLGANPN 277 (480)
T ss_pred HcCCCCC
Confidence 5565444
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.40 E-value=64 Score=20.54 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=14.0
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLI 278 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 278 (519)
.|-..++..+++.|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444444455554455444444444443
No 371
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.17 E-value=1.5e+02 Score=25.97 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=7.1
Q ss_pred HHhCCCHHHHHHHHcc
Q 044422 180 YSKCRVIIDAYKVFEE 195 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~ 195 (519)
+.+.|++++|..-|..
T Consensus 105 ~F~ngdyeeA~skY~~ 120 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQE 120 (271)
T ss_pred hhhcccHHHHHHHHHH
Confidence 3344444444444433
No 372
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.48 E-value=36 Score=31.62 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=31.7
Q ss_pred CChhH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 044422 199 RNVVS-WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS 241 (519)
Q Consensus 199 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 241 (519)
+|+.+ ||..|....+.||+++|+.++++.++.|+.--..||-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34443 57888888888999999999988888887654455533
No 373
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=49.41 E-value=1.2e+02 Score=23.95 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCcchhhhhhhhhh
Q 044422 436 CWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDASHK 514 (519)
Q Consensus 436 ~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~ 514 (519)
...++..+++.|...|..+..... ................+..|+..|...|.+.|..+..+...+.+
T Consensus 23 t~~el~~vl~~l~~~G~k~~~~~~-----------~~~~~~~~~~~~q~~KI~aLw~~~~~~~~v~~~s~~aL~~fvkr 90 (119)
T PF06252_consen 23 TEAELEKVLDELKRLGFKPPKPAR-----------RPGRRPGMATSAQLRKIRALWKQLGKPGAVRDPSEAALDAFVKR 90 (119)
T ss_pred CHHHHHHHHHHHHHccCcCccccc-----------cCCCCCCCcchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHH
Confidence 578899999999999986443110 11111222355666778888888888888777655555554443
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.35 E-value=3.5e+02 Score=28.77 Aligned_cols=304 Identities=9% Similarity=-0.011 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-FIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++..+...+....+ ..-..|..+..... ...++ ++-..+.+.. .+.....-...+..+++.++++...+++
T Consensus 48 ~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~ 122 (644)
T PRK11619 48 QMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS 122 (644)
T ss_pred CHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc
Confidence 66666666665542222 11222332222211 11333 3333333433 2333444555666777888898888844
Q ss_pred ccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH--HHHHHHHHcCC----
Q 044422 194 EEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR--SAHCQTIRMGF---- 267 (519)
Q Consensus 194 ~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~--~~~~~~~~~~~---- 267 (519)
.. ...+...-.....+....|+.++|......+-..| ......+..++..+.+.|.+.... +=+..+...|-
T Consensus 123 ~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA 200 (644)
T PRK11619 123 PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLV 200 (644)
T ss_pred CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33 34566666777788888899888877777776665 334566778888887766554432 11222222221
Q ss_pred -------CCc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH--HcCChHHHHHHHHHHHHCC-CCCC
Q 044422 268 -------FSY-IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYA--QHGLAVRAIDLFEEMMKQR-VKPD 336 (519)
Q Consensus 268 -------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~-~~p~ 336 (519)
.++ ......++..+. +...+...+.... ++...-..++.++. ...+.+.|..++....... ..+.
T Consensus 201 ~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~ 276 (644)
T PRK11619 201 TYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNED 276 (644)
T ss_pred HHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHH
Confidence 111 111122222221 2223333222221 12211111222222 3455688999998875443 3333
Q ss_pred HH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCCHHHHHHHHHh
Q 044422 337 AI--TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPI-YPNAVIWEAAESR 413 (519)
Q Consensus 337 ~~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~~~~~ 413 (519)
.. +...+.......+....+...++...... .+......-+..-.+.++++.+...+..|+. ..+...|..
T Consensus 277 ~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~Y---- 350 (644)
T PRK11619 277 QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRY---- 350 (644)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHH----
Confidence 22 23333333333322455666666544322 3445555566666689999999999998841 011112222
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
=+..++...|+.++|...|+..
T Consensus 351 ------------W~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 351 ------------WQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred ------------HHHHHHHHcCCHHHHHHHHHHH
Confidence 2678877899999999999986
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.25 E-value=61 Score=28.10 Aligned_cols=51 Identities=10% Similarity=-0.161 Sum_probs=25.1
Q ss_pred cCCChhhHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 147 STRNIRGGAPYQCLAIRT-GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
..++.+......+.+.+. ...|++.+|..++.++...|+.++|.++.+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444333333321 234555566655666666666666655555443
No 376
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.64 E-value=1.2e+02 Score=24.84 Aligned_cols=65 Identities=8% Similarity=-0.018 Sum_probs=45.1
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
++.+.+.+.|++++..=. .++..+.+.++.-.|..+++.+.+.+...+..|.-..++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345566777877666533 46777778888899999999999987666655433345667666643
No 377
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.47 E-value=20 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=24.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
..|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446677789999999999998885 67777654
No 378
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=48.34 E-value=20 Score=28.11 Aligned_cols=35 Identities=46% Similarity=0.933 Sum_probs=26.7
Q ss_pred eeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCc
Q 044422 457 GCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
+++|+.+ +.|..++.+||+. ++..++...||.|+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~ 36 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDT 36 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchh
Confidence 4567654 9999999999976 366677777887776
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.29 E-value=1.9e+02 Score=30.29 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEec
Q 044422 432 AGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAE 473 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (519)
.+.|++.+|.+.+-.+....+.|.. +|..+......+...
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~--f~~~LL~d~lplL~~ 545 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKS--FWPLLLCDALPLLES 545 (566)
T ss_dssp ------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHHHhCC
Confidence 4448888888887777777776664 666555544444443
No 380
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.88 E-value=4e+02 Score=30.10 Aligned_cols=163 Identities=15% Similarity=0.033 Sum_probs=92.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------------------C-----------C--hhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHG-------------------K-----------D--IVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
.+|..+|...+|+..|.+... + . ..-|-.++..+-+.+-.+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 346677778888877776542 0 1 2235567777777787887777766
Q ss_pred HHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 044422 327 EMMKQRVKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYP 402 (519)
Q Consensus 327 ~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 402 (519)
...+. +++| ..+++.+.+-....|.+-+|...+-.--+ ..-......-++-.++.+|.++.-.+ |.-.+..
T Consensus 1008 ~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~-fpfigl~- 1082 (1480)
T KOG4521|consen 1008 KAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALAT-FPFIGLE- 1082 (1480)
T ss_pred HHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhh-CCccchH-
Confidence 66554 2322 34566777777777777666655433211 11123356667778888888765444 1111111
Q ss_pred CHHHHHHHHHhhhcCCCC-chhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 403 NAVIWEAAESRLLLEPEC-AATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
+.++=...+.+-...|-. ...|..|-.-+...++|.+|-.++-+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 111111223333444433 34566566666788899888876443
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=47.21 E-value=3.8e+02 Score=28.53 Aligned_cols=304 Identities=9% Similarity=-0.028 Sum_probs=130.2
Q ss_pred cCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCc-hhhhhhhhhcCCccCHHH
Q 044422 40 SSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFG-SSNVFDQLLDTPVVDVEK 118 (519)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (519)
.+.|++..+.++...+.. .. -.....|..+...... ........+....+..+.... .......+.. ..+|..
T Consensus 44 ~~~g~~~~~~~~~~~l~d-~p-L~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~--~~~w~~ 117 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKD-YP-LYPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELAR--REDWRG 117 (644)
T ss_pred HHCCCHHHHHHHHHhccC-CC-cHhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHH--ccCHHH
Confidence 356777777777766642 22 1333334444333321 123344555555443332221 1112222222 236665
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--------------
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-------------- 184 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-------------- 184 (519)
.+..+. ..+.+...-.....+....|+.+.|......+-..| ...+...+.++..+.+.|
T Consensus 118 ~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 555221 123455555666666667777665555444443333 223344455555555444
Q ss_pred ----CHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCchHHHHH
Q 044422 185 ----VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT--GSGALGQGRSA 258 (519)
Q Consensus 185 ----~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~ 258 (519)
+...|..+...+..........++..+. +...+...+.. +.|+...-..++.++. ...+.+.|..+
T Consensus 192 l~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~ 263 (644)
T PRK11619 192 MKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLM 263 (644)
T ss_pred HHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 4444444444332111111222222221 12222211111 1222211111222222 23455667777
Q ss_pred HHHHHHcC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 259 HCQTIRMG-FFSY--IQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 259 ~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
+....... +.+. ..+...+.......+...++...++....+ +.....--+....+.++++.+...+..|.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~ 343 (644)
T PRK11619 264 IPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK 343 (644)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc
Confidence 76654332 2222 122333333333332244555555544322 333333334444467777777777766644322
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 334 KPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
. ...-.--+..++...|+.++|...|+.+.
T Consensus 344 ~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 344 E-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred c-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 22223334455555677777777766653
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.13 E-value=36 Score=23.14 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 424 HVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 424 ~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
....+.+|...|++++|.++++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34479999999999999999998754
No 383
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.78 E-value=1.6e+02 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=12.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+++.+|..+|++..+..+++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 444555555555555555554443
No 384
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.22 E-value=2e+02 Score=25.03 Aligned_cols=126 Identities=6% Similarity=0.048 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH-----H
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLG--VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS-----C 377 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~ 377 (519)
|..++.... .+.. +.....+.+.....+-...++.. +...+...+++++|..-++..... |....+. .
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHH
Confidence 444444332 3333 44555555554432222222222 334577788888888888876642 2222232 3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|.+.....|.+++|+.+++... ...|..+ ....-..++...|+-++|..-|++....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~----~~~w~~~------------~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIK----EESWAAI------------VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccc----cccHHHH------------HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5566778899999999888663 2233322 12224788999999999999999888776
No 385
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.80 E-value=2.5e+02 Score=26.10 Aligned_cols=113 Identities=8% Similarity=0.058 Sum_probs=81.5
Q ss_pred CHHHHHHHHHhcCC-----CChhHHHHHHHHHHH-cC-ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 286 NVEEAVYVFNNMHG-----KDIVSWNSMIAGYAQ-HG-LAVRAIDLFEEMMK-QRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 286 ~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
.+.+|+.+|+.... .|......++..... .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+..
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35677788873322 255555555555554 22 23333344444443 245678888999999999999999999
Q ss_pred HHHHHHHHc-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 358 VYFDSMAKH-GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 358 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
++|+..... +..-|...|..+|+.....|+..-..+++++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 999988754 55668889999999999999999999998875
No 386
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.45 E-value=1.5e+02 Score=24.29 Aligned_cols=63 Identities=6% Similarity=-0.017 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 285 (519)
++.+.+++.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34456677787776543 4677778877777889999999998776665554444445555555
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.35 E-value=62 Score=23.29 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=29.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
...+.++|+..|....+.-..|. -.++..++.+|+.-|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766543332 23566777777777777776655
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.03 E-value=30 Score=30.90 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=61.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHH
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHY-SCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHV 425 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 425 (519)
|....+++.|...+.+... +.|+..+| +.=+.++.+..+++.+.. . -.+++++.|.....+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~--------------d-crralql~~N~vk~h~ 82 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEE--------------D-CRRALQLDPNLVKAHY 82 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhh--------------h-HHHHHhcChHHHHHHH
Confidence 4455677778876666665 55777544 334445555555554443 2 2466778888888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 426 QLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 426 ~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|...+.....+++|+..+.+..+.+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHH
Confidence 89999999999999999999985543
No 389
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.77 E-value=2.2e+02 Score=24.80 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHcCChHH
Q 044422 245 ACTGSGALGQGRSAHCQTIRMGFFSY--IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS--WNSMIAGYAQHGLAVR 320 (519)
Q Consensus 245 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 320 (519)
.+...+++++|..-++.........+ ..+--.|.......|.+++|+..++....++... ...--+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 33444555555555544443211100 1112233444555666666666666666554333 2223345666666677
Q ss_pred HHHHHHHHHHCC
Q 044422 321 AIDLFEEMMKQR 332 (519)
Q Consensus 321 A~~~~~~m~~~~ 332 (519)
|..-|+...+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 766666666554
No 390
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.78 E-value=1.8e+02 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHH-HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 321 AIDLFEEM-MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 321 A~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+.++.. ...|+..+......++. ...|++..|..+++.+..
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 33344433 23455555555544443 244667777777766543
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=42.76 E-value=3.8e+02 Score=27.26 Aligned_cols=60 Identities=5% Similarity=0.092 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
|....-+++..++.+..++-.+.+-.+|.. .+-..|-.++.+|... ..+.-..+|+++.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 334444444444444444444444444432 2333444444444444 33444444444443
No 392
>PRK10941 hypothetical protein; Provisional
Probab=42.42 E-value=2.8e+02 Score=25.64 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..+.+-.+|.+.++++.|....+.+ +.+.|+++.-+..-+-.|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~l---------------l~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEAL---------------LQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3455677889999999999988766 45666666666667889999999999999999887753
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.26 E-value=59 Score=22.08 Aligned_cols=29 Identities=3% Similarity=-0.003 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
|-.---.+|.++...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334455666666666666666655554
No 394
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.05 E-value=2e+02 Score=29.55 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=18.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDKGLKTN 455 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 455 (519)
|+.++ ..+++.+|+.+++++...|..|.
T Consensus 248 Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 248 IAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44444 44777888888888877775544
No 395
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=42.03 E-value=66 Score=30.42 Aligned_cols=87 Identities=10% Similarity=-0.038 Sum_probs=55.4
Q ss_pred HHHHHhCCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch
Q 044422 177 ITLYSKCRVIIDAYKVFEEMP--VR-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
.+-|.+.|.+++|+..+..-. .| |++.|..-..+|.+...+..|..-.+.....+ ..-...|..-+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 356889999999999998765 34 88888888999999999988877666654432 111122333333333344555
Q ss_pred HHHHHHHHHHH
Q 044422 254 QGRSAHCQTIR 264 (519)
Q Consensus 254 ~a~~~~~~~~~ 264 (519)
+|.+=++...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55544444444
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=41.71 E-value=5e+02 Score=28.36 Aligned_cols=198 Identities=14% Similarity=0.025 Sum_probs=106.0
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHH-HHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLIS-MYCKCGNVEEAVYVFNNMHG--------KDIVSWNSMIA 310 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~ 310 (519)
....++++|..++.++...-..|+. ..++++-. .....|++++|.++-+.... +.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467888888888877654222221 12333321 23345778888777665432 35567777778
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHccCCHH--HHHHHHHHHHHc-C-CC----cCHHHHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITF---LGVI--SSCRHGGLVE--EGKVYFDSMAKH-G-LK----PELDHYSC 377 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll--~~~~~~g~~~--~a~~~~~~m~~~-~-~~----p~~~~~~~ 377 (519)
+..-.|++++|..+..+..+.--.-|...| ..+. ..+...|... .....+...... . -. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999998888766554222233322 2222 2244556322 222333333211 0 01 12233444
Q ss_pred HHHHHHHcCCHHHHHHH----HHhCC-CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 378 VVDLLGRAGLLEEARDF----IKQMP-IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~----~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
+..++.+ .+.+..- ++-.. ..|..... ...+..|+..+...|+.++|...++++.....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~-------------~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLS-------------RLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHH-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4445444 3333222 11111 11111111 12335689999999999999999999998877
Q ss_pred CCCCeeEE
Q 044422 453 KTNPGCSW 460 (519)
Q Consensus 453 ~~~~~~~~ 460 (519)
.+.+...|
T Consensus 650 ~~~~~~~~ 657 (894)
T COG2909 650 NGQYHVDY 657 (894)
T ss_pred CCCCCchH
Confidence 66554444
No 397
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.54 E-value=2.7e+02 Score=25.14 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=10.5
Q ss_pred HcCChHHHHHHHHHHHHCC
Q 044422 314 QHGLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~ 332 (519)
..+++.+|+++|++.....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455666666666655443
No 398
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.39 E-value=86 Score=29.72 Aligned_cols=81 Identities=12% Similarity=-0.038 Sum_probs=51.4
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHH
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
.+-|.+.|.+++|...|....... +.|.+++..-..+|.+..++..|+.-......-| ...+.+|.+.+....++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD----KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh----HHHHHHHHHHHHHHHHH
Confidence 345667889999999887765542 3388888888899999888876665444332211 22355666655554444
Q ss_pred HHHHHH
Q 044422 222 ELYRMM 227 (519)
Q Consensus 222 ~~~~~m 227 (519)
....+.
T Consensus 179 g~~~EA 184 (536)
T KOG4648|consen 179 GNNMEA 184 (536)
T ss_pred hhHHHH
Confidence 444443
No 399
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=41.03 E-value=1.9e+02 Score=23.14 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
-..+..++.-++.=.|..++|.++++..+-.++....|.- ++..|.+..+-++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~e----------------lLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKE----------------LLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHH----------------HHHHHHcCCCHHHHHHHHHHH
Confidence 3456677778888889999999998888655555544442 788888888888877766554
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.02 E-value=89 Score=31.96 Aligned_cols=125 Identities=13% Similarity=-0.012 Sum_probs=77.9
Q ss_pred HHHHHHHHccCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 186 IIDAYKVFEEMPVRNVVSWTAI---IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
-+-+..+|..|..++...|-.| .-.+.-.|+...|...+.........-.-+....|.....+.|..-+|..++.+.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 3456677777777665555332 2223446788888887766644321112234455666677777777888887776
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH
Q 044422 263 IRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAG 311 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 311 (519)
.... ....-++-.+.++|.-..+++.|++.|++..+. ++..-+.|...
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 6654 444556777788888888888888888876542 34444444433
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.91 E-value=1.3e+02 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=19.5
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 368 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..|+..+|..++.++...|+.++|.+...++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466666666666666666666666666555
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.87 E-value=2.2e+02 Score=24.55 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=13.0
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 044422 345 SSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~ 365 (519)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 346666666666666666654
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.38 E-value=2.5e+02 Score=24.19 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHhHCCCCCCH--H-----HHHHHHHHHhcCCChhhHHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDA--S-----FLSTAVTSCGSTRNIRGGAPYQCLAIR 163 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~--~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (519)
..+.|+.+|+...+.--.|.. . .-...+-.|.+.|.+++|.+++++..+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 578888888877765333211 1 112234457777777777777777655
No 404
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.79 E-value=1.1e+02 Score=20.76 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC-----RHGGLVEEGKVY 359 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-----~~~g~~~~a~~~ 359 (519)
+...|++-+|-++++++-.....|....+-.+|+.. .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445666667777776665433333444455555432 244555555544
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.25 E-value=4.1e+02 Score=26.10 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc---------CCCCcH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNS--MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM---------GFFSYI 271 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 271 (519)
.+.-+.+.|...|+++.|++.|.+.+.- ..+.....|..+|..-.-.|+|..+.......... .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 3444455555555555555555443321 11122233444444444455554444444443332 123344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
..+..+.+...+ ++..|.+.|-
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 444444444433 5555555443
No 406
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.15 E-value=1.7e+02 Score=21.46 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHH
Q 044422 155 APYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 220 (519)
..++..+.+.|+-- ... .-..-+...+.+.|.++++.++.++..+|..+.+++...|+..-|
T Consensus 19 ~~v~~~L~~~~Vlt-~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFT-PDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCC-HHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34566666666321 111 112223445677777777777777777777777777776654443
No 407
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.42 E-value=1.1e+02 Score=21.19 Aligned_cols=49 Identities=6% Similarity=-0.079 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
+....++.++..+++..-.+.++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4555666666666666667777777777766663 344555544444443
No 408
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.65 E-value=94 Score=21.42 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Q 044422 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR 384 (519)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (519)
|+...++.++..+++..-.+.+...+.+..+.|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555442 344444444444443
No 409
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.13 E-value=2.7e+02 Score=23.55 Aligned_cols=61 Identities=5% Similarity=-0.105 Sum_probs=42.6
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 125 DLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 125 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-..+..+.+.|-+
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 35567877666654 45555555677888999999999988766766544456777777754
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.11 E-value=4.5e+02 Score=25.87 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 274 ANSLISMYCKCGNVEEAVYVFNNMHG------KDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 274 ~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+.-+.+.|..+|+++.|.+.|.+... ..+..|-.+|..-.-.|+|.....+..+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34444555555555555555555332 122334444444445555555555444443
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.03 E-value=4.5e+02 Score=25.81 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=27.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAI--TFLGVISSCR--HGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~m~~ 365 (519)
+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666677766666665 444333 2333333332 23455666666665554
No 412
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.39 E-value=4.6e+02 Score=25.82 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHH---hHCCCC-----CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCC
Q 044422 115 DVEKLISMHHDL---HRERLK-----VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV-YVGSSLITLYSKCRV 185 (519)
Q Consensus 115 ~~~~A~~~~~~m---~~~g~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~ 185 (519)
+.++...++++. .++|+. .+......++.. ..||...++..++.+.... +++. .+
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~~~~------------- 227 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL--SNGDARRALNLLELAALSA-EPDEVLI------------- 227 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCcccC-------------
Confidence 445555555552 234443 455555555544 5688888888888776553 2322 11
Q ss_pred HHHHHHHHccCC---CCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 186 IIDAYKVFEEMP---VRNVVSWTAIIAAFAQE---WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 186 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
.+...+++.+-. .++-..+..+|+++.++ .+.+.|+-++-+|.+.|-.|-...-..++-++-.-|
T Consensus 228 ~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 228 LELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 223333333321 35556677788888665 679999999999999997776665555555554444
No 413
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.32 E-value=3.9e+02 Score=25.36 Aligned_cols=53 Identities=8% Similarity=0.150 Sum_probs=28.6
Q ss_pred HHHHHHccCCchHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 242 ILSACTGSGALGQGRSAHCQTIRM-GFFSYIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 242 ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
|.-+..+.|+..+|.+++..+.+. .+..-..+...|+.++....-+.++..++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444567777777777666543 11112234456666666665554444443
No 414
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=34.32 E-value=1.9e+02 Score=23.12 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCc----CcChhhHHHHHHHHHHHHHHcCCCCCcchhhhhhh
Q 044422 436 CWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKS----NTRLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDA 511 (519)
Q Consensus 436 ~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~ 511 (519)
+..-+.+.|+++.+.|+.- .....-.|+..+.. ..+...+...++.++.+|+..|+.-+.+-+.+.+.
T Consensus 48 NpnTv~raY~eLE~eG~i~--------t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~~~~ 119 (125)
T COG1725 48 NPNTVQRAYQELEREGIVE--------TKRGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELLKEI 119 (125)
T ss_pred CHHHHHHHHHHHHHCCCEE--------EecCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455678999999999732 22333444443311 22455566788889999999999877777777666
Q ss_pred hhhc
Q 044422 512 SHKR 515 (519)
Q Consensus 512 ~~~~ 515 (519)
.+.+
T Consensus 120 ~~~~ 123 (125)
T COG1725 120 YEED 123 (125)
T ss_pred Hhcc
Confidence 6544
No 415
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.23 E-value=3.9e+02 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcCH
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAK----HGLKPEL 372 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~ 372 (519)
...+..+...|+..++.+.+.+...+..+ .|.+.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 45666777888888888888877766553 4555554
No 416
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.13 E-value=3.6e+02 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=13.5
Q ss_pred hccCCHHHHHHHHHHHHHCCC
Q 044422 432 AGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~ 452 (519)
...++|.+|+++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777655543
No 417
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.74 E-value=1e+03 Score=29.60 Aligned_cols=115 Identities=9% Similarity=-0.085 Sum_probs=69.0
Q ss_pred HHHhcCCChhhHHHHHHHH----HHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc-CCCCChhHHHHHHHHHHhcCCh
Q 044422 143 TSCGSTRNIRGGAPYQCLA----IRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE-MPVRNVVSWTAIIAAFAQEWQV 217 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~~~~ 217 (519)
.+--+.+.+.+|...++.- .+. ......|-.+...|+..+++|...-+... ...|+ ...-|.-....|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 3444566777777777652 111 11223445555578888888777766663 32332 22334455677888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
+.|...|+.+.+.+ ++...+++-+++.....|.+..+....+-..
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 88999998887764 3336667777776666676666655444433
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=33.30 E-value=5.3e+02 Score=26.18 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred HHHHhcCCCChhHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHH-HcC
Q 044422 292 YVFNNMHGKDIVSW-NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR--HGGLVEEGKVYFDSMA-KHG 367 (519)
Q Consensus 292 ~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m~-~~~ 367 (519)
..+..+..++..++ +.++.-+.+.|-..+|...+..+... .+|+...|..+|+--. ..-++..+..+++.|. ..|
T Consensus 449 ~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 449 SALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 33444444444333 34455555566666666666665543 3444555555544211 1112455556666555 344
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHH
Q 044422 368 LKPELDHYSCVVDLLGRAGLLEEA 391 (519)
Q Consensus 368 ~~p~~~~~~~li~~~~~~g~~~~A 391 (519)
.|+..|.-.+..=...|..+.+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~ 549 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENC 549 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccc
Confidence 4444554444433344444333
No 419
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.29 E-value=2e+02 Score=21.20 Aligned_cols=41 Identities=2% Similarity=-0.158 Sum_probs=18.1
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLA 161 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 161 (519)
++|+.....|+..|+..|-.++....-.=.++...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444455555555544444433333333333333333
No 420
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=32.79 E-value=43 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHhHCC-CCCCHH
Q 044422 115 DVEKLISMHHDLHRER-LKVDAS 136 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g-~~p~~~ 136 (519)
|++.|+..|..+...| ++|+.+
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhhc
Confidence 9999999999999866 666654
No 421
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.46 E-value=2.8e+02 Score=22.72 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=41.4
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhcC-CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 124 HDLHRERLKVDASFLSTAVTSCGST-RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 124 ~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
+.+.+.|++++..=.. ++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456678776665443 45555543 56788999999998888666666544456777777654
No 422
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=32.22 E-value=5.6e+02 Score=26.14 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHH
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIA 209 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 209 (519)
.|.....+++..++++-.+..++.+-.+|+..| -+...|-.++.+|... .-+.-..+|+++.+ .|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355566677777777777777888887777765 3455677777777777 45556666665543 33444444444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHccCCchHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHh
Q 044422 210 AFAQEWQVDMCLELYRMMRNSMLEP--N---DFTFTSILSACTGSGALGQGRSAHCQTIR-MGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 210 ~~~~~~~~~~a~~~~~~m~~~g~~p--~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 283 (519)
.|-+ ++..++...|.+...+-++- + ...|..|... -..+.+....+...+.. .|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66677777776665432210 0 1122222221 13345555555555543 3444455566666677777
Q ss_pred cCCHHHHHHHHHhcCC
Q 044422 284 CGNVEEAVYVFNNMHG 299 (519)
Q Consensus 284 ~~~~~~a~~~~~~~~~ 299 (519)
..++.+|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7778888887775544
No 423
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.08 E-value=3.9e+02 Score=24.19 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=48.8
Q ss_pred hcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc----------------CCCCChhHHHHHHH
Q 044422 146 GSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE----------------MPVRNVVSWTAIIA 209 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------------m~~~~~~~~~~li~ 209 (519)
.+..+.+--..+.+-....++.-+..-..+++ +...||...|+.-++. ..+|.+.....++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 33334333344444444444444443333332 3345555555544433 22455555555665
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 210 AFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 210 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
.|. .+++++|.+++.++.+.|..|... .+++.+.+
T Consensus 248 ~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 248 ACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 543 456777777777777777766432 33444444
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.79 E-value=3.8e+02 Score=28.73 Aligned_cols=28 Identities=7% Similarity=-0.152 Sum_probs=18.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDKGLKTN 455 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 455 (519)
|+.++.. |+...++.++++|.+.|+.+.
T Consensus 252 LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 252 LLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 3444444 677777777777777776554
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.70 E-value=7.5e+02 Score=27.40 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC--h-----hHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHH-
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKD--I-----VSWNSMIAGYAQHGLA--VRAIDLFEEMMKQRVKPDAITFLG- 342 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~-----~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~t~~~- 342 (519)
-|..|+..|...|+.++|+++|.+..+.+ . ..+-.++.-+.+.+.. +-.+++-+...+....-....|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 57889999999999999999999887522 1 1233344444444443 444444444333211100011111
Q ss_pred -----------HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC--------CHHHHHHH--HHhC---
Q 044422 343 -----------VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG--------LLEEARDF--IKQM--- 398 (519)
Q Consensus 343 -----------ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~A~~~--~~~~--- 398 (519)
-+-.|......+-+..+++.+....-.++....+.++..|++.= +-+++.+. .+.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 12234455667778888888886555667778888888886531 12223222 1111
Q ss_pred -----CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 399 -----PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 399 -----~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...|+. .++.-|. ...|......+.+.|+-++|+.++-....
T Consensus 666 l~~s~~Y~p~~--------~L~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQL--------LLERLNG-DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcch--------hhhhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 111211 1111122 34555556666688888999887765543
No 426
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=31.61 E-value=2.4e+02 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=25.7
Q ss_pred cCcChhhHHHHHHHHHHHHHHcCCCCCcchhhh
Q 044422 476 SNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKV 508 (519)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 508 (519)
.||.+...-+...++.....+.|+.|.+-.+..
T Consensus 68 ~nPa~~i~~~a~~~~~~l~~elGLtP~sR~kl~ 100 (116)
T TIGR01558 68 ANPALTVVEDAFKQLRSIGSALGLTPSSRSRLV 100 (116)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence 477777777778888888889999999955543
No 427
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.49 E-value=2.2e+02 Score=20.94 Aligned_cols=42 Identities=7% Similarity=-0.056 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
++|+-....|+..|..+|..+++...-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666677666666655555566666666554
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.42 E-value=2e+02 Score=27.22 Aligned_cols=106 Identities=7% Similarity=0.101 Sum_probs=58.5
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHH--HHHHHHHHHcCChHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSW--NSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~li~~~~~~g~~~~A~~~ 324 (519)
.--+.+|+++++...+.| ..+|+ +..+...--...+.+.++ ++.+| ..+.-+.-+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 344566777777776654 22222 222222111222333333 44444 3445555678999999999
Q ss_pred HHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 044422 325 FEEMMKQRVKPDAI---TFLGVISSCRHGGLVEEGKVYFDSMAKHG 367 (519)
Q Consensus 325 ~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 367 (519)
++++.+. .|-.. .-..|+.+|.....+..+..++-+.-+..
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9988765 22222 23457777777766666666665554443
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.28 E-value=4.7e+02 Score=24.59 Aligned_cols=79 Identities=8% Similarity=-0.008 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGF----FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQHGLAVRAIDLFEE 327 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 327 (519)
..|.+.++.....+. ..+......++....+.|+.+.-..+++.... ++......++.+++...+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 345555555555311 23444555555566666665555555554443 3445556666666666666666666666
Q ss_pred HHHC
Q 044422 328 MMKQ 331 (519)
Q Consensus 328 m~~~ 331 (519)
....
T Consensus 227 ~l~~ 230 (324)
T PF11838_consen 227 LLSN 230 (324)
T ss_dssp HHCT
T ss_pred HcCC
Confidence 6554
No 430
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.66 E-value=5.4e+02 Score=25.17 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=72.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHH--HcCCCcCHHHH---HHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHh
Q 044422 343 VISSCRHGGLVEEGKVYFDSMA--KHGLKPELDHY---SCVVDLLGRAGLLEEARDFIKQMP----IYPNAVIWEAAESR 413 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~--~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~~~~~ 413 (519)
|.......|++++|..++.++. ..|-.--..-. --=++.|.-.+++-.|--+-+++. -+||......
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl---- 212 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL---- 212 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH----
Confidence 4556677899999988887764 22211111111 112456666777777776666652 2344433332
Q ss_pred hhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEe
Q 044422 414 LLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRA 472 (519)
Q Consensus 414 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (519)
..|..+++.....+.|=.+.+.++..-+.|......--|+.....+..|..
T Consensus 213 --------kyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 213 --------KYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred --------HHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 478888999999999999999999998887544433345544444444444
No 431
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=5e+02 Score=24.73 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcCHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK----HGLKPELDHY 375 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~ 375 (519)
|...+++|..+ +..++++-.+..++..+. |-.--..........||+.|+.+.|.+.+....+ .|.+.|+..+
T Consensus 69 D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 69 DQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred cHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 44444444432 122344444444444443 2111233455566778899999988888776653 5666666554
Q ss_pred H
Q 044422 376 S 376 (519)
Q Consensus 376 ~ 376 (519)
.
T Consensus 147 ~ 147 (393)
T KOG0687|consen 147 K 147 (393)
T ss_pred H
Confidence 3
No 432
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=29.59 E-value=2.4e+02 Score=24.18 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
+++|...|++..+ ..|+..+|..-+.... +|-+++.++.+.+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4555556655554 3678888877777663 3555666665554
No 433
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=5.7e+02 Score=25.23 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=67.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHH--------HHHHHHccCCHHHHHHHHHHHHH-cCCC----cCHHHHHHHHH
Q 044422 314 QHGLAVRAIDLFEEMMKQRVKPDAITFLG--------VISSCRHGGLVEEGKVYFDSMAK-HGLK----PELDHYSCVVD 380 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~--------ll~~~~~~g~~~~a~~~~~~m~~-~~~~----p~~~~~~~li~ 380 (519)
...++.+|.++-+.....-..-|..|+.. +--++...|+......++..... .-+. --....|.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 34556666666655443322234444333 23334555666666666555442 1122 23445678888
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 381 LLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.|...+.++.|.++..+.. .|+..+-+.. ...+.-+....+-.++|..|.+.|-.....
T Consensus 218 ~yL~n~lydqa~~lvsK~~-~pe~~snne~----------ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV-YPEAASNNEW----------ARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhhHHHHHHHHHhhccc-CccccccHHH----------HHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 8888899999999988874 2322211111 112333555666666677776666555443
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.08 E-value=2.3e+02 Score=20.69 Aligned_cols=38 Identities=8% Similarity=0.168 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHH
Q 044422 284 CGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321 (519)
Q Consensus 284 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 321 (519)
..+.+.+.++++.+...+..+|..+.+++-..|...-|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34566677777777777777777777777666654443
No 435
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=28.81 E-value=7.8e+02 Score=26.71 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhH--------CCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCC
Q 044422 115 DVEKLISMHHDLHR--------ERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFI--ANVYVGSSLITLYSKCR 184 (519)
Q Consensus 115 ~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g 184 (519)
+.++...+++...+ .++..+......++..+ .||...+..+++.+...... .+... =
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------I 235 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------I 235 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------c
Confidence 45666677766654 34666777777777653 78999888888876532110 00000 0
Q ss_pred CHHHHHHHHccCC---CC-ChhHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc-----
Q 044422 185 VIIDAYKVFEEMP---VR-NVVSWTAIIAAF---AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL----- 252 (519)
Q Consensus 185 ~~~~A~~~~~~m~---~~-~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----- 252 (519)
..+.+.+.+.... .. ....| ..|+++ ++.++++.|+..+.+|.+.|..|....-..++.+.-.-|.-
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hy-d~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al 314 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHF-DTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQAL 314 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHH
Confidence 1122333332211 11 11222 233333 35689999999999999999888665555555444344532
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
.-|...++.....|++-......-+.-.++.+
T Consensus 315 ~~~~~~~~a~~~~g~pE~~~~laq~~~~la~a 346 (725)
T PRK13341 315 VVVEACAAAFERVGLPEGLYPLAQAALYLATA 346 (725)
T ss_pred HHHHHHHHHHHHhCCcchhhHHHHHHHHHHcC
Confidence 22444555566667554433333333333333
No 436
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.73 E-value=5.7e+02 Score=26.27 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 044422 435 RCWDQAARVRKLMKDKGLKTN 455 (519)
Q Consensus 435 g~~~~A~~~~~~m~~~g~~~~ 455 (519)
|+..+|+.+++++...|..|.
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 677777777777777776554
No 437
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.37 E-value=1.4e+02 Score=23.18 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3334445555555544444444444444455555443
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.36 E-value=3.1e+02 Score=21.85 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 320 RAIDLFEEMMKQRVKPD-AITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 320 ~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
.+.++|..|...|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666655553322 33445555555556666666666543
No 439
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=28.35 E-value=3.9e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=14.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
|+.+... |+...|.++++.+...|..|
T Consensus 206 l~dai~~-~~~~~A~~~l~~L~~~g~~p 232 (326)
T PRK07452 206 LADALLQ-GNTGKALALLDDLLDANEPA 232 (326)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHCCCcH
Confidence 4444433 55666666666666555443
No 440
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.76 E-value=3.3e+02 Score=22.33 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=40.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHG-GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL 388 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (519)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345667777665543 334444443 45778899999998877666766655566666666643
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.13 E-value=4.8e+02 Score=27.96 Aligned_cols=117 Identities=9% Similarity=0.108 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChh----------HHHHHHHHHHHcCChHH
Q 044422 255 GRSAHCQTIRMGFFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG-KDIV----------SWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~----------~~~~li~~~~~~g~~~~ 320 (519)
-...+.+|...--.|+ ..+...++-.|....+++...++.+.++. ||.. .|.-.+.---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3445566655422332 34556666677777788888888777664 3211 12222222234577788
Q ss_pred HHHHHHHHHHC-C-CCCCHH-----HHHHH--HHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 321 AIDLFEEMMKQ-R-VKPDAI-----TFLGV--ISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 321 A~~~~~~m~~~-~-~~p~~~-----t~~~l--l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
|+.+.-.|.+. | +.||.. .|--+ -..|...+..+.|...|++..+ +.|+..
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 88877666654 3 556643 22221 1234455667788888887765 445543
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.02 E-value=2.8e+02 Score=23.42 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=39.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHH
Q 044422 328 MMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE 389 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 389 (519)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4556776665443 334444445566678888888887776667666666677777777554
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.90 E-value=3.8e+02 Score=24.31 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=23.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCCchHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRN----SM-LEPNDFTFTSILSACTGSGALGQGRS 257 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~a~~ 257 (519)
+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455555666666665555421 12 12223334444444455555444433
No 444
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.87 E-value=1.5e+02 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=9.4
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m 328 (519)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555544443
No 445
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.82 E-value=3.9e+02 Score=28.10 Aligned_cols=88 Identities=8% Similarity=0.003 Sum_probs=56.6
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCHH------HHHHHHccCC-CCChhHHHHHHHH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTG--FIANVYVGSSLITLYSKCRVII------DAYKVFEEMP-VRNVVSWTAIIAA 210 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~~~~~~~~li~~ 210 (519)
+++.+|...|++..+.++++...... -+.=...||..|+.+.+.|.++ .|.+.++... ..|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 88999999999999999998887653 2223446788888888888764 3444454443 4566777777666
Q ss_pred HHhcCChHHHHHHHHHH
Q 044422 211 FAQEWQVDMCLELYRMM 227 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m 227 (519)
-..--+..-..-++.+.
T Consensus 113 sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 113 SLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred hcChHhHHhccHHHHHH
Confidence 54433333333333333
No 446
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.52 E-value=1.3e+02 Score=31.43 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 222 ELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
...+....+-.-.+...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|...+..+.++|+...+..+-+.+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334443332333455566677777777777777777766654422 23456666777777777766666555443
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.42 E-value=4.2e+02 Score=24.05 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=24.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMK----QR-VKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
+...|.+.|++++|.++|+.+.. .| ..+...+...+..+..+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44555566666666666655431 11 222333344444444455555444433
No 448
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.36 E-value=3e+02 Score=21.05 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCC
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHGKDI--VSWNSMIAGYAQHGL--AVRAIDLFEEMMKQRV 333 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 333 (519)
..++..|...++.++|...++++.-|+. .....++......++ -+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 3455667777888888888888765521 122333333333311 2334445555555543
No 449
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.32 E-value=2e+02 Score=22.33 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=49.9
Q ss_pred HHHHccCCHHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH-HH-----HHHHHhhhcC
Q 044422 345 SSCRHGGLVEEGKVYFDSMA-KHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAV-IW-----EAAESRLLLE 417 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~-----~~~~~~~~~~ 417 (519)
..+...|+.-+|+++.+++. .+|-..+..... ..+|.+-. ++-.... .||.. +| ..+.++..+.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh------~~QG~if~--~lA~~te-n~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLH------RLQGTIFY--KLAKKTE-NPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHH------HHHhHHHH--HHHHhcc-CchHHHHHHHHhHHHHHHHhccC
Confidence 45677899999999999988 444333221111 11121110 0111111 33321 11 4445666777
Q ss_pred CCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 418 PECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 418 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
|.++..+..|..-+.....|+++.+--++
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88777777777666666666666665444
No 450
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.24 E-value=4.6e+02 Score=23.22 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=54.1
Q ss_pred HHccCCHHHHHHHHHHHHH----cCCCcCHH--HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC--
Q 044422 347 CRHGGLVEEGKVYFDSMAK----HGLKPELD--HYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP-- 418 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~----~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 418 (519)
+.....++.|.+.+....- .+-+|... .+-.+.-.|-..|+.+....+++.. ...++++++...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~A--------l~~y~~a~~~e~~~ 158 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKA--------LEFYEEAYENEDFP 158 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH--------HHHHHHHHHhCcCC
Confidence 3445566666666555441 22334432 3333445555666644444444433 112222222221
Q ss_pred ----CCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 044422 419 ----ECAATHVQLANLYAGVRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 419 ----~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~ 452 (519)
+.......++....+.|++++|.+.|.+....+-
T Consensus 159 ~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 159 IEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred CCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 1123555678889999999999999999987754
No 451
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=26.22 E-value=8e+02 Score=25.98 Aligned_cols=272 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCHHHHHHHH---ccCCCCChhHHHHHHHHHHhcCChH-------HHHHHHHHHHHCCC--CCCHHHHHHH
Q 044422 175 SLITLYSKCRVIIDAYKVF---EEMPVRNVVSWTAIIAAFAQEWQVD-------MCLELYRMMRNSML--EPNDFTFTSI 242 (519)
Q Consensus 175 ~li~~~~~~g~~~~A~~~~---~~m~~~~~~~~~~li~~~~~~~~~~-------~a~~~~~~m~~~g~--~p~~~t~~~l 242 (519)
.+|-.|.|+|++++|.++. +.........+-..+..|....+-. +...-|++...... .|=....-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q ss_pred HHHHHccCCch-----------------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 243 LSACTGSGALG-----------------------------------QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 243 l~~~~~~g~~~-----------------------------------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
|..|--..+-- +..+.+...-+..+.+ ..-.-.....+.-+|++
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf~~LlLtgqF 274 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLLYFQVLLLTGQF 274 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------HHHHHHHTT-H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHH
Q 044422 288 EEAVYVFNN--MHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG---GLVEEGKVYFDS 362 (519)
Q Consensus 288 ~~a~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~ 362 (519)
+.|.+++-. ....+.+.+.+.+.-|.-..-.+....=+-.....+..| .-|..||..|.+. .++..|.+++--
T Consensus 275 E~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~td~~~Al~Y~~l 352 (613)
T PF04097_consen 275 EAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEITDPREALQYLYL 352 (613)
T ss_dssp HHHHHHHHT--T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT-HHHHHHHHHG
T ss_pred HHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhccCHHHHHHHHHH
Q ss_pred HHHcCCCcCHHHHHHHHHHHHHcCC---------------HHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 363 MAKHGLKPELDHYSCVVDLLGRAGL---------------LEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 363 m~~~~~~p~~~~~~~li~~~~~~g~---------------~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+...+-+.....+...+.-+.-..+ ...+.+--..+ ++..+...+..+......+-.+.+-+..
T Consensus 353 i~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~d 432 (613)
T PF04097_consen 353 ICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFED 432 (613)
T ss_dssp GGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHH
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 044422 427 LANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-+..|--.|+++.|++++.+...
T Consensus 433 Ai~Ly~La~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 433 AILLYHLAEEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
No 452
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.18 E-value=7.6e+02 Score=25.71 Aligned_cols=148 Identities=8% Similarity=0.029 Sum_probs=93.6
Q ss_pred cCHHHHHHHHHHHhH-------CCCCCCHHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHR-------ERLKVDASFLSTAVTSCGSTR-----NIRGGAPYQCLAIRTGFIANVYVGSSLITLYS 181 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (519)
.|.+.|+..|+...+ .| ++.....+-.+|.+.. +...|..++...-+.| .|+....-..+....
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETG 338 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcC
Confidence 389999999999877 55 3345556666766643 5677999999888888 455554444443333
Q ss_pred h-CCCHHHHHHHHccCCC-CChhHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHH
Q 044422 182 K-CRVIIDAYKVFEEMPV-RNVVSWTAIIAAFA----QEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQG 255 (519)
Q Consensus 182 ~-~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 255 (519)
. -.+...|.++|...-. -.+.++-.+..+|. -..+...|..++++.-+.| .|...--...+..+.. +.++.+
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~ 416 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTA 416 (552)
T ss_pred CccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHH
Confidence 3 3467889998887763 23333333333322 2346788888888888877 4443333334444444 777777
Q ss_pred HHHHHHHHHcCC
Q 044422 256 RSAHCQTIRMGF 267 (519)
Q Consensus 256 ~~~~~~~~~~~~ 267 (519)
...+..+.+.|.
T Consensus 417 ~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 417 LALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHhhh
Confidence 777777766653
No 453
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=26.10 E-value=1.1e+02 Score=18.08 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHH
Q 044422 424 HVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 424 ~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
+..+.-.+-..|++++|.++|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3456788899999999999944
No 454
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.09 E-value=3e+02 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 376 SCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
..++..|...|++++|.+-+.+++
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhC
Confidence 345566666677777777777664
No 455
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.98 E-value=1.7e+02 Score=21.07 Aligned_cols=16 Identities=6% Similarity=-0.107 Sum_probs=6.8
Q ss_pred HHHhCCCHHHHHHHHc
Q 044422 179 LYSKCRVIIDAYKVFE 194 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~ 194 (519)
..+..|+.+-+.-+++
T Consensus 32 ~A~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 32 YAAENGNLEIVKLLLE 47 (89)
T ss_dssp HHHHTTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3334444444444443
No 456
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.44 E-value=2.2e+02 Score=19.31 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=23.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCchHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC-----TGSGALGQGRSA 258 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~ 258 (519)
+...|++=+|.++++.+-.....+....+..||... .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344666667777776664432223444455555443 234555555443
No 457
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=25.32 E-value=9.8e+02 Score=26.68 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHcCC
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK-HGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~ 387 (519)
.+.-.+.|.++.+.--.-|..++..-.......|++..+.+++.++.+ .|-.++...|..++..+...|-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 334444555544432222455555555566667888888888877764 5556777777666666665553
No 458
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=25.24 E-value=5.3e+02 Score=24.68 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=49.9
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPN-AVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
-++..+.|+..+......++..+. |+...+..-++++. ..++ ..+...++..+.-...... . -+.-+...|+.
T Consensus 150 ~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~--f-~l~dail~g~~ 224 (334)
T COG1466 150 KKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNI--F-DLADALLKGDV 224 (334)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCH--H-HHHHHHHCCCH
Confidence 344456666667666666665554 66666666555551 1122 2333333322222111111 1 23345567888
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q 044422 438 DQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 438 ~~A~~~~~~m~~~g~~~~~ 456 (519)
..|..+++.+...|..|-.
T Consensus 225 ~~a~~~l~~L~~~ge~p~~ 243 (334)
T COG1466 225 KKALRLLRDLLLEGEEPLK 243 (334)
T ss_pred HHHHHHHHHHHHcCCcHHH
Confidence 9999999998888876543
No 459
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.24 E-value=1.6e+02 Score=25.88 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=62.1
Q ss_pred ccCHHHHHHHHHHHhHCCCCC-------CHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHhCCC-ChHHHHHH
Q 044422 113 VVDVEKLISMHHDLHRERLKV-------DASFLSTAVTSCGSTR---------NIRGGAPYQCLAIRTGFI-ANVYVGSS 175 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p-------~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~g~~-~~~~~~~~ 175 (519)
..+.+.|+.++..|--..++. ...-|-.+..+|++.| +.+.-..+++..++.|++ .=+.+|++
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYss 213 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSS 213 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeecccccee
Confidence 358999999999996544332 4556888999999886 455567788888888864 23467888
Q ss_pred HHHHHHhCCCHHHHHHHHccCC
Q 044422 176 LITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 176 li~~~~~~g~~~~A~~~~~~m~ 197 (519)
+|+--.-.-++++..++|..++
T Consensus 214 iIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 214 IIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccccCCCCHHHHHHHHHHhh
Confidence 8877666677888888776553
No 460
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.73 E-value=6.3e+02 Score=26.01 Aligned_cols=103 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHH
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHV 425 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 425 (519)
+......+-...+-..+.+.|+..+......++... .|+...|..+++++ .......+...+...+...+. ....
T Consensus 175 f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~--~~i~ 250 (509)
T PRK14958 175 LAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEP--LLLF 250 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCH--HHHH
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 426 QLANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 426 ~L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
.|+.++.. |+.+.++.++++|.+.|..|
T Consensus 251 ~ll~al~~-~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 251 DILEALAA-KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCH
No 461
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=24.72 E-value=7e+02 Score=24.81 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=48.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH--------HHHcCCHHHHHHHHHhCC
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL--------LGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~ 399 (519)
....+.||..+.+.+...++..-..+-...+|+-..+.+ .|=...+-++|-. -.+...-+++.++++.|+
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 345689999998888888887777888888888888765 3333333332211 123456788999999995
No 462
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=24.26 E-value=3.1e+02 Score=20.46 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=28.4
Q ss_pred cCCcCcChhhHHHHHHHHHHHHHHcCCCCCcchhhh
Q 044422 473 EDKSNTRLSEILPVLDFLVDQMKTLGYVPEVHEEKV 508 (519)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 508 (519)
....||.+...-...+++..-..+.|+.|.+..+..
T Consensus 56 ~~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~ 91 (100)
T PF05119_consen 56 NPKKNPAVSILNKAMKQMRSLASELGLTPASRAKLA 91 (100)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 345678888888888888999999999999855443
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.22 E-value=4.4e+02 Score=24.64 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHH
Q 044422 334 KPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
..|...|..++.+|.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 346666777777777776655443
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.19 E-value=3.7e+02 Score=21.38 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 254 QGRSAHCQTIRMGFFS-YIQVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
++..+|+.|...|+.. ....|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677777777665543 34566666666777777777777665
No 465
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.18 E-value=3.1e+02 Score=21.38 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=21.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+++.+.++...++|+++++-|.+.| ..+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455566667777777777777666 344444443433
No 466
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.94 E-value=2.6e+02 Score=24.67 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHccC---------CchHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSML-------EPNDFTFTSILSACTGSG---------ALGQGRSAHCQTIRMGFFS-YIQVANSLIS 279 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~-------~p~~~t~~~ll~~~~~~g---------~~~~a~~~~~~~~~~~~~~-~~~~~~~li~ 279 (519)
.+.|..++..|--..+ .-...-|..+..+|++.| +.+...++++...+.|++- -.++|.++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 5666777766643321 123455677777777766 4455667777777777542 2456777776
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 044422 280 MYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~ 298 (519)
--.-.-+++++.++|..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 6555566777777776554
No 467
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.92 E-value=7.8e+02 Score=25.08 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=50.9
Q ss_pred HHHHHHHHHHH-hHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 116 VEKLISMHHDL-HRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 116 ~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
.+...+.++.. ...|+..+......+... ..|++..|..+++++...+ ....++..+...+
T Consensus 182 ~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------- 243 (484)
T PRK14956 182 LSVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------- 243 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh--------------
Confidence 34444444443 234666666666555544 4477777777776654322 1112222222211
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 044422 195 EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND 236 (519)
Q Consensus 195 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 236 (519)
.-.+...+..++.+....+....|+.++.+|.+.|..|..
T Consensus 244 --g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 --GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred --CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 1113334445555544444456677777777777765543
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.86 E-value=1.9e+02 Score=22.30 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=22.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444444455556666666555544555554444444444443
No 469
>PF14044 NETI: NETI protein
Probab=23.81 E-value=49 Score=21.88 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCCc-chhhhhhhhhhc
Q 044422 486 VLDFLVDQMKTLGYVPEV-HEEKVDDASHKR 515 (519)
Q Consensus 486 ~~~~l~~~m~~~g~~p~~-~~~~~~~~~~~~ 515 (519)
.+..-+++|++.||.|-. .+++|..-.+++
T Consensus 9 TI~~CL~RM~~eGY~PvrR~EkPiF~e~k~~ 39 (57)
T PF14044_consen 9 TISDCLARMKKEGYMPVRRIEKPIFKEVKDG 39 (57)
T ss_pred cHHHHHHHHHHcCCCceeeccccceEEecCC
Confidence 566788999999999987 666666555544
No 470
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.78 E-value=7.6e+02 Score=24.85 Aligned_cols=215 Identities=12% Similarity=0.054 Sum_probs=109.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHH-----HHhCCCHHHHHHHHccCCC---CChhHHHHHHH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV--GSSLITL-----YSKCRVIIDAYKVFEEMPV---RNVVSWTAIIA 209 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~-----~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 209 (519)
+.+...++.|+.+- .+.+++.|..|+... ....+.. .+..|+.+-+.-+++.-.. ++....+.+..
T Consensus 37 t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~ 112 (480)
T PHA03100 37 LPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112 (480)
T ss_pred hhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence 45555667777664 444556676665432 2334555 6677777777666665433 33333444544
Q ss_pred HHH-hcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhc
Q 044422 210 AFA-QEWQVDMCLELYRMMRNSMLEPNDFT--FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQV--ANSLISMYCKC 284 (519)
Q Consensus 210 ~~~-~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~ 284 (519)
+.. ..|+.+-+ +.+.+.|..++... -.+.+..++..|. .-.++.+.+.+.|..++... -.+.+...+..
T Consensus 113 A~~~~~~~~~iv----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 113 AISKKSNSYSIV----EYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred HHhcccChHHHH----HHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 443 55555444 34445665553321 1245555566662 12334555666665554321 13456667777
Q ss_pred CCHHHHHHHHHhcCCCCh--------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCH
Q 044422 285 GNVEEAVYVFNNMHGKDI--------VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI---TFLGVISSCRHGGLV 353 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~ 353 (519)
|+.+-+.-+++.-..++. ..+.+.+...+..|. ...++++.+.+.|..++.. -.+.|..+ +..|..
T Consensus 187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~ 263 (480)
T PHA03100 187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNP 263 (480)
T ss_pred CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCH
Confidence 888777777765443321 122444444555555 1134445555666554422 23333333 445554
Q ss_pred HHHHHHHHHHHHcCCCcC
Q 044422 354 EEGKVYFDSMAKHGLKPE 371 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~ 371 (519)
+ +++.+.+.|..++
T Consensus 264 ~----iv~~Ll~~gad~n 277 (480)
T PHA03100 264 E----FVKYLLDLGANPN 277 (480)
T ss_pred H----HHHHHHHcCCCCC
Confidence 4 4455556665444
No 471
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=23.68 E-value=57 Score=20.69 Aligned_cols=33 Identities=39% Similarity=0.374 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCcchhhhhhh
Q 044422 479 RLSEILPVLDFLVDQMKTLGYVPEVHEEKVDDA 511 (519)
Q Consensus 479 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~ 511 (519)
...++--.+-++.+.|.+.|+.++.++.+|+.+
T Consensus 5 rkR~IElk~~elrd~LEe~g~~~eeIe~kv~~~ 37 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGYSEEEIEEKVDEL 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344566667778899999999777788888764
No 472
>PRK07914 hypothetical protein; Reviewed
Probab=23.65 E-value=5.2e+02 Score=24.51 Aligned_cols=24 Identities=17% Similarity=-0.074 Sum_probs=16.0
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCC
Q 044422 432 AGVRCWDQAARVRKLMKDKGLKTN 455 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g~~~~ 455 (519)
.-.|+..+|..+++++...|..|-
T Consensus 206 i~~g~~~~A~~~l~~L~~~ge~p~ 229 (320)
T PRK07914 206 AVAGDVAGAAEALRWAMMRGEPHV 229 (320)
T ss_pred HHCCCHHHHHHHHHHHHHCCCchH
Confidence 345677777777777777775543
No 473
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.63 E-value=1e+03 Score=26.37 Aligned_cols=113 Identities=17% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCC--h-----hHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHH-
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRN--V-----VSWTAIIAAFAQEWQV--DMCLELYRMMRNSMLEPNDFTFTS- 241 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~t~~~- 241 (519)
-|..|+..|...|..++|+++|.+....+ . ..+.-++.-+.+.+.. +-+++.-+...+....-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47778888888888888888887776422 1 1222334444333333 333333333322211000001111
Q ss_pred -----------HHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 242 -----------ILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 242 -----------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
.+-.+......+-+...++.+....-.++....+.++..|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1223445555666666777766655455666667777666643
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.83 E-value=5.9e+02 Score=23.77 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
+..+.+.+++....+.+..+. .+..-...+..+...|++..|++++.+..+. .. +-.-|+.+ ... ..+++...
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~-~~L--~~~L~e~~ 177 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCV-RHL--SSQLQETL 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHH-HHH--hHHHHHHH
Confidence 344444444444444444442 2333344566667788888888877766542 00 00001110 000 11122222
Q ss_pred HHHHHHHHc-----CCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 358 VYFDSMAKH-----GLKPELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 358 ~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
...+++.+. -..-|+..|..++.+|.-.|+...+.+-+
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 222222211 01467888999999999999877766433
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=22.74 E-value=3.6e+02 Score=25.89 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC---chhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 044422 388 LEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC---AATHVQLANLYAGVRCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 388 ~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~ 454 (519)
+.++++++++- -|.......+...++.-|+. +..|..++......|.+++++.+|++....|-+|
T Consensus 106 lsECl~Li~eG--cp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 106 LSECLNLIEEG--CPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
No 476
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=22.73 E-value=5.6e+02 Score=22.95 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH
Q 044422 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP-----NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ 272 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (519)
.....-+|.|+--|.-...+.+|-..| +...|+.| +...=..-|......|+.++|.+....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Q ss_pred HHHHHHHH----HHhcCCHHHHHHHHHh
Q 044422 273 VANSLISM----YCKCGNVEEAVYVFNN 296 (519)
Q Consensus 273 ~~~~li~~----~~~~~~~~~a~~~~~~ 296 (519)
.+--|... ..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 477
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=22.50 E-value=7.4e+02 Score=24.30 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=98.5
Q ss_pred CCChhhHHHHHHHHHH-----hCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHH-HHHHhcCChHHHH
Q 044422 148 TRNIRGGAPYQCLAIR-----TGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAII-AAFAQEWQVDMCL 221 (519)
Q Consensus 148 ~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li-~~~~~~~~~~~a~ 221 (519)
.++.+.|.+-+-...+ .....+..+...++..|...++|+.- |..+ ...-+.|+...|.
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~L---------------ne~i~~Lskkrgqlk~ai 89 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLL---------------NEQIRLLSKKRGQLKQAI 89 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHH---------------HHHHHHHHHHhhHHHHHH
Confidence 4555555544433322 22344556677777777777777652 2222 2334566776665
Q ss_pred HHH--HHHHHCCCCCCHHHHHHHHHHHHc--cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 222 ELY--RMMRNSMLEPNDFTFTSILSACTG--SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 222 ~~~--~~m~~~g~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
.-. +-|.-..-.||..|--.++..+-. .|.. |-+ .--+..-..|...+-..|++++|..++.+.
T Consensus 90 ~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkI------yvE------vERarlTk~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 90 QSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKI------YVE------VERARLTKMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCce------EEe------ehHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 422 333333335666665555554321 1110 000 001223345566677788888888887765
Q ss_pred CCCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCC-CCCH-----HHHHHHHHHHHccCCHHHHHHH
Q 044422 298 HGKDIVSWNSM------------IAGYAQHGLAVRAIDLFEEMMKQRV-KPDA-----ITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 298 ~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~-----~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
. +.||.++ +..|...+++-.|.-+-++....-+ .||. .-|..+++...+.+.+-.+.+.
T Consensus 158 ~---VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~ 234 (439)
T KOG1498|consen 158 Q---VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRS 234 (439)
T ss_pred c---hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 4 2333322 3445566677666666555544322 2332 2466677766666666666666
Q ss_pred HHHHHH
Q 044422 360 FDSMAK 365 (519)
Q Consensus 360 ~~~m~~ 365 (519)
++...+
T Consensus 235 Yraiy~ 240 (439)
T KOG1498|consen 235 YRAIYD 240 (439)
T ss_pred HHHHhc
Confidence 666654
No 478
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.37 E-value=3.3e+02 Score=20.14 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=29.5
Q ss_pred HHhcCChHHHHHHHHHHH----HCCCCCC----HHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMR----NSMLEPN----DFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~----~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
..+.|++.+|.+.+.+.. ..+.... ......+...+...|+.++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777765555443 2222221 12223344455667777777777776654
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.27 E-value=1.4e+02 Score=23.39 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC
Q 044422 350 GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG 386 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (519)
.+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 20 ~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 20 SPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3334444444444444444444443333444444444
No 480
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.18 E-value=6.6e+02 Score=23.56 Aligned_cols=60 Identities=7% Similarity=-0.067 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
.....++....+.|+.+.-..+++.... ++......++.+.+...+.+...++++.....
T Consensus 170 dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 170 DLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 3344444444455554443344433332 33444455555555555555555555555443
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.71 E-value=5.5e+02 Score=22.48 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
...+.++..+...|+++.|.++|.-+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 45567777777788888888888777765
No 482
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.26 E-value=7.9e+02 Score=24.11 Aligned_cols=55 Identities=2% Similarity=0.018 Sum_probs=35.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc--cCCchHHHHHHHHHHHc
Q 044422 210 AFAQEWQVDMCLELYRMMRNSMLEPNDF--TFTSILSACTG--SGALGQGRSAHCQTIRM 265 (519)
Q Consensus 210 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~--~g~~~~a~~~~~~~~~~ 265 (519)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888776 555544 34444444443 45667777777766554
No 483
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.24 E-value=3.4e+02 Score=24.60 Aligned_cols=80 Identities=16% Similarity=-0.003 Sum_probs=40.2
Q ss_pred HHHHHHHHccCCCCChhHHHH--HHHHHHhcCChHHHHHHHHHHHHC-----C--------CC------------CCHHH
Q 044422 186 IIDAYKVFEEMPVRNVVSWTA--IIAAFAQEWQVDMCLELYRMMRNS-----M--------LE------------PNDFT 238 (519)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~-----g--------~~------------p~~~t 238 (519)
+++|..+++.-.......|.. +..++...|+...+..+++.+... + .. .+..+
T Consensus 115 i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEt 194 (246)
T PF07678_consen 115 INKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVET 194 (246)
T ss_dssp HHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHH
Confidence 345555555443333333443 334555556666666666666432 0 00 01233
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
=...+-++.+.++.+.+..+.+.+.+.
T Consensus 195 TaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 195 TAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 333334444457777777777777654
No 484
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.17 E-value=1.7e+02 Score=22.90 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=18.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
++..+...+..-.|.++++.+.+.+...+..|.-.-|..+..
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 344444444444555555555554444444443333333333
No 485
>PHA02878 ankyrin repeat protein; Provisional
Probab=21.16 E-value=8.6e+02 Score=24.54 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHCCCC
Q 044422 438 DQAARVRKLMKDKGLK 453 (519)
Q Consensus 438 ~~A~~~~~~m~~~g~~ 453 (519)
+...+-++.|+...+.
T Consensus 358 ~~c~~ei~~mk~~~i~ 373 (477)
T PHA02878 358 DKCEDELNRLASIKIT 373 (477)
T ss_pred HHHHHHHHHHhheeeC
Confidence 4556667778877654
No 486
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.13 E-value=2.5e+02 Score=27.68 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMP-----------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
+.-.|++.++-.||+..|+++++.+. .-.+.+|.-+.-+|.-.+++..|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999988775 1245567777888888899999998887663
No 487
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.87 E-value=7.6e+02 Score=27.28 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=39.3
Q ss_pred hHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 318 AVRAIDLFEEM-MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 318 ~~~A~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.+...+++.+. .+.|+..+...+..++.. ..|++..++..++++... ......++..+...+ -....+...++++
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~--sgGdlR~Al~eLEKLia~-~~~~~IT~e~V~all-g~~~~~~I~~lid 256 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRA--GGGSVRDSLSVLDQLLAG-AGPEGVTYERAVALL-GVTDSALIDEAVD 256 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHh-cCCCHHHHHHHHH
Confidence 34444455444 345676666666655543 247778888888777632 123333444333332 2334444444444
Q ss_pred hC
Q 044422 397 QM 398 (519)
Q Consensus 397 ~~ 398 (519)
.+
T Consensus 257 AL 258 (824)
T PRK07764 257 AL 258 (824)
T ss_pred HH
Confidence 44
No 488
>PRK02287 hypothetical protein; Provisional
Probab=20.74 E-value=5.3e+02 Score=21.92 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 372 LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+..++.-++.-.|..+.|.++++...-.++....|. .++..|.+..+-++..++-++..+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~----------------elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNK----------------EPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHH----------------HHHHHHHccCCHHHHHHHHHHHHh
Confidence 34566777777778888888888887754333333332 267888888887777777665543
No 489
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.55 E-value=5.3e+02 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVY 171 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 171 (519)
....+.++..|...||++.|.++|..+++.. ..|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 3456778888888999999999998888764 34443
No 490
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=20.18 E-value=2.2e+02 Score=23.19 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLY 180 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (519)
.++..+-+.|-..+.+.++++|.+.|+..+...|+.++.-.
T Consensus 114 GvL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 114 GVLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34555567788899999999999999999999998877643
No 491
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=20.01 E-value=1e+03 Score=26.28 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=7.0
Q ss_pred HHcCCHHHHHHHHH
Q 044422 383 GRAGLLEEARDFIK 396 (519)
Q Consensus 383 ~~~g~~~~A~~~~~ 396 (519)
+..|+.+-+.-+++
T Consensus 663 ~~~g~~~iv~~Ll~ 676 (823)
T PLN03192 663 MAEDHVDMVRLLIM 676 (823)
T ss_pred HHCCcHHHHHHHHH
Confidence 44555555554444
Done!