Query 044422
Match_columns 519
No_of_seqs 456 out of 3547
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.6E-31 3.3E-35 272.1 29.6 404 37-451 92-580 (597)
2 4g26_A Pentatricopeptide repea 100.0 4.3E-30 1.5E-34 257.8 20.2 212 117-350 7-223 (501)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-29 5.3E-34 253.7 22.7 184 202-385 27-223 (501)
4 2xpi_A Anaphase-promoting comp 100.0 1.8E-28 6.2E-33 254.9 29.2 383 20-432 149-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.9E-23 9.8E-28 203.7 36.8 352 41-450 11-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.8E-21 9.6E-26 189.5 35.9 338 41-436 45-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.7E-20 9.2E-25 186.2 32.3 312 120-456 12-362 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.7E-19 6E-24 180.2 36.8 311 115-447 41-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.2E-19 7.4E-24 182.6 28.0 355 39-451 16-479 (514)
10 2gw1_A Mitochondrial precursor 99.8 2.8E-18 9.5E-23 174.4 28.3 315 115-451 21-445 (514)
11 3ieg_A DNAJ homolog subfamily 99.8 3.4E-17 1.2E-21 157.9 34.1 298 134-451 2-336 (359)
12 3fp2_A TPR repeat-containing p 99.8 3.9E-17 1.3E-21 167.0 31.7 354 41-451 37-492 (537)
13 3hym_B Cell division cycle pro 99.8 5.5E-17 1.9E-21 154.6 30.5 288 131-437 18-321 (330)
14 3ieg_A DNAJ homolog subfamily 99.8 4.1E-16 1.4E-20 150.3 34.1 278 115-398 18-332 (359)
15 3hym_B Cell division cycle pro 99.8 2.5E-16 8.4E-21 150.1 26.7 267 166-450 18-299 (330)
16 1fch_A Peroxisomal targeting s 99.7 1E-16 3.5E-21 155.5 19.6 290 148-446 38-355 (368)
17 1fch_A Peroxisomal targeting s 99.7 3.1E-16 1E-20 152.1 21.5 281 115-398 40-356 (368)
18 3mkr_A Coatomer subunit epsilo 99.7 7.3E-15 2.5E-19 137.3 29.3 251 177-451 6-265 (291)
19 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.8E-22 172.7 10.4 128 267-394 123-258 (1134)
20 3spa_A Mtrpol, DNA-directed RN 99.7 7.7E-18 2.6E-22 173.9 8.8 127 167-293 124-258 (1134)
21 1b89_A Protein (clathrin heavy 99.7 6E-16 2.1E-20 148.4 21.3 332 41-446 15-368 (449)
22 3fp2_A TPR repeat-containing p 99.7 3.7E-15 1.3E-19 152.3 28.8 316 115-451 40-408 (537)
23 4eqf_A PEX5-related protein; a 99.7 6.2E-16 2.1E-20 149.9 21.8 260 134-398 64-353 (365)
24 4eqf_A PEX5-related protein; a 99.7 1.1E-15 3.6E-20 148.3 20.6 270 169-446 64-352 (365)
25 1b89_A Protein (clathrin heavy 99.7 1.5E-16 5E-21 152.7 13.9 284 114-444 17-305 (449)
26 3cv0_A Peroxisome targeting si 99.7 4E-15 1.4E-19 141.5 23.7 261 134-398 20-312 (327)
27 3mkr_A Coatomer subunit epsilo 99.7 8.2E-15 2.8E-19 137.0 24.6 246 143-398 7-261 (291)
28 4g1t_A Interferon-induced prot 99.7 3.8E-14 1.3E-18 142.4 30.6 343 115-460 66-469 (472)
29 3cv0_A Peroxisome targeting si 99.7 3E-15 1E-19 142.3 21.4 260 169-447 20-312 (327)
30 2xm6_A Protein corresponding t 99.6 6.9E-12 2.4E-16 126.6 39.9 305 114-453 93-435 (490)
31 1xi4_A Clathrin heavy chain; a 99.6 1.5E-12 5.1E-17 139.1 35.9 358 37-443 993-1377(1630)
32 2xm6_A Protein corresponding t 99.6 9.4E-12 3.2E-16 125.6 39.1 303 114-451 57-397 (490)
33 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.5E-18 124.5 21.1 223 202-450 6-236 (258)
34 2pl2_A Hypothetical conserved 99.6 2.8E-13 9.4E-18 120.9 19.3 209 200-448 4-212 (217)
35 2ooe_A Cleavage stimulation fa 99.5 3.5E-11 1.2E-15 122.7 36.1 353 41-451 24-455 (530)
36 3uq3_A Heat shock protein STI1 99.5 2.5E-12 8.5E-17 117.5 22.6 218 135-365 5-235 (258)
37 3u4t_A TPR repeat-containing p 99.5 4.6E-12 1.6E-16 116.9 24.4 244 171-431 4-265 (272)
38 2pl2_A Hypothetical conserved 99.5 2.2E-12 7.5E-17 115.0 20.3 196 167-398 2-211 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-12 6.2E-17 119.8 20.3 238 114-360 19-269 (275)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.1E-13 3.1E-17 121.8 17.5 220 203-444 45-269 (275)
41 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-11 3.9E-16 112.8 23.7 201 201-450 37-238 (252)
42 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-11 5.9E-16 111.7 24.6 194 135-330 37-237 (252)
43 1ouv_A Conserved hypothetical 99.4 1E-10 3.5E-15 108.0 28.6 223 200-451 5-252 (273)
44 2vq2_A PILW, putative fimbrial 99.4 4.3E-11 1.5E-15 106.6 25.0 197 170-398 8-208 (225)
45 2vq2_A PILW, putative fimbrial 99.4 2.4E-11 8.1E-16 108.4 23.3 196 133-330 6-210 (225)
46 2q7f_A YRRB protein; TPR, prot 99.4 4.1E-12 1.4E-16 115.0 18.1 194 201-398 23-219 (243)
47 1ouv_A Conserved hypothetical 99.4 1.5E-10 5.1E-15 107.0 27.3 221 134-366 5-251 (273)
48 1xi4_A Clathrin heavy chain; a 99.4 1.4E-09 4.7E-14 116.7 37.6 315 37-396 1057-1379(1630)
49 2q7f_A YRRB protein; TPR, prot 99.4 8.8E-12 3E-16 112.8 18.2 200 234-451 21-223 (243)
50 4g1t_A Interferon-induced prot 99.4 2.7E-10 9.3E-15 114.1 30.8 304 131-451 47-402 (472)
51 2h6f_A Protein farnesyltransfe 99.4 3.8E-11 1.3E-15 116.1 23.1 243 135-384 97-365 (382)
52 3u4t_A TPR repeat-containing p 99.4 1.6E-11 5.4E-16 113.3 19.7 227 136-366 4-250 (272)
53 2h6f_A Protein farnesyltransfe 99.4 2.1E-11 7.1E-16 117.9 21.2 224 170-398 97-344 (382)
54 3sf4_A G-protein-signaling mod 99.4 1.3E-11 4.3E-16 120.9 19.3 296 133-438 7-364 (406)
55 2ooe_A Cleavage stimulation fa 99.4 6.9E-10 2.3E-14 113.1 32.7 359 41-450 58-492 (530)
56 4a1s_A PINS, partner of inscut 99.4 5.8E-12 2E-16 123.9 16.8 272 137-450 50-372 (411)
57 4a1s_A PINS, partner of inscut 99.3 2.7E-11 9.3E-16 119.0 18.5 258 113-398 61-369 (411)
58 3ulq_A Response regulator aspa 99.3 8.3E-11 2.8E-15 114.6 21.7 228 207-450 109-368 (383)
59 3ro2_A PINS homolog, G-protein 99.3 4.1E-11 1.4E-15 113.7 18.5 260 138-398 8-329 (338)
60 3ro2_A PINS homolog, G-protein 99.3 4.9E-11 1.7E-15 113.1 19.0 271 171-451 6-333 (338)
61 2ond_A Cleavage stimulation fa 99.3 2.4E-10 8.1E-15 107.7 23.1 179 218-398 81-267 (308)
62 3sf4_A G-protein-signaling mod 99.3 3.8E-11 1.3E-15 117.5 17.7 271 167-450 6-336 (406)
63 4abn_A Tetratricopeptide repea 99.3 4.4E-11 1.5E-15 119.8 18.5 210 217-445 84-316 (474)
64 3vtx_A MAMA; tetratricopeptide 99.3 2.1E-10 7.2E-15 99.0 20.0 164 270-450 4-170 (184)
65 3nf1_A KLC 1, kinesin light ch 99.3 4.2E-11 1.4E-15 112.6 14.8 234 202-450 28-307 (311)
66 3vtx_A MAMA; tetratricopeptide 99.2 1.2E-09 4E-14 94.2 20.8 161 202-365 6-169 (184)
67 3nf1_A KLC 1, kinesin light ch 99.2 5.1E-11 1.8E-15 111.9 12.7 166 133-298 25-222 (311)
68 2ond_A Cleavage stimulation fa 99.2 4.8E-09 1.6E-13 98.7 25.7 211 152-366 33-270 (308)
69 3q15_A PSP28, response regulat 99.2 6.4E-09 2.2E-13 100.9 27.0 226 207-449 107-364 (378)
70 3e4b_A ALGK; tetratricopeptide 99.2 2.2E-09 7.4E-14 106.8 23.6 303 115-452 53-389 (452)
71 3ulq_A Response regulator aspa 99.2 2.1E-09 7.3E-14 104.5 22.6 281 115-398 27-365 (383)
72 4abn_A Tetratricopeptide repea 99.2 3.5E-10 1.2E-14 113.3 17.2 191 169-363 101-318 (474)
73 3e4b_A ALGK; tetratricopeptide 99.2 1E-09 3.5E-14 109.2 20.0 302 115-452 18-353 (452)
74 3as5_A MAMA; tetratricopeptide 99.2 3.8E-09 1.3E-13 90.6 20.8 164 271-451 8-174 (186)
75 3as5_A MAMA; tetratricopeptide 99.1 5.1E-09 1.7E-13 89.7 19.9 157 171-329 9-171 (186)
76 4gyw_A UDP-N-acetylglucosamine 99.1 1.5E-09 5.2E-14 113.3 18.7 162 270-448 8-172 (723)
77 1hz4_A MALT regulatory protein 99.1 3.6E-08 1.2E-12 95.3 26.7 257 142-398 21-319 (373)
78 3q15_A PSP28, response regulat 99.1 6.6E-08 2.2E-12 93.7 26.0 281 115-398 27-362 (378)
79 1hz4_A MALT regulatory protein 99.0 1E-07 3.5E-12 92.1 26.7 251 115-365 29-321 (373)
80 3edt_B KLC 2, kinesin light ch 99.0 1.5E-09 5.1E-14 100.1 11.8 200 236-450 43-281 (283)
81 4gyw_A UDP-N-acetylglucosamine 99.0 7.7E-09 2.6E-13 108.0 17.7 158 170-329 9-172 (723)
82 3edt_B KLC 2, kinesin light ch 99.0 3.6E-09 1.2E-13 97.5 13.3 216 116-331 24-281 (283)
83 4i17_A Hypothetical protein; T 99.0 3.9E-08 1.3E-12 87.9 19.5 206 199-430 5-223 (228)
84 4i17_A Hypothetical protein; T 98.9 9.3E-08 3.2E-12 85.3 19.6 194 168-373 5-214 (228)
85 2fo7_A Synthetic consensus TPR 98.9 7.5E-08 2.6E-12 77.4 16.1 131 304-451 3-133 (136)
86 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.4E-12 85.9 20.4 248 177-451 20-283 (310)
87 1qqe_A Vesicular transport pro 98.9 1E-07 3.5E-12 88.8 19.0 169 115-298 32-226 (292)
88 1qqe_A Vesicular transport pro 98.9 1.1E-07 3.8E-12 88.5 18.2 231 153-402 3-271 (292)
89 4e6h_A MRNA 3'-END-processing 98.9 1.5E-06 5.2E-11 89.7 27.7 215 220-451 328-571 (679)
90 2fo7_A Synthetic consensus TPR 98.8 1.3E-07 4.4E-12 75.9 15.0 125 203-329 3-130 (136)
91 4ga2_A E3 SUMO-protein ligase 98.8 7.3E-08 2.5E-12 79.8 12.1 144 277-436 3-149 (150)
92 2pzi_A Probable serine/threoni 98.7 1.1E-07 3.8E-12 99.5 15.1 171 247-436 402-583 (681)
93 3mv2_B Coatomer subunit epsilo 98.7 1.4E-06 4.8E-11 80.1 20.3 174 220-398 85-279 (310)
94 3qky_A Outer membrane assembly 98.7 8.5E-07 2.9E-11 80.9 18.8 180 236-451 15-225 (261)
95 3qky_A Outer membrane assembly 98.7 5.8E-07 2E-11 82.0 17.0 183 169-366 14-224 (261)
96 3urz_A Uncharacterized protein 98.7 7.3E-07 2.5E-11 78.3 16.1 21 209-229 12-32 (208)
97 3qou_A Protein YBBN; thioredox 98.7 1.1E-06 3.7E-11 81.5 17.8 176 115-296 101-280 (287)
98 2pzi_A Probable serine/threoni 98.7 3.7E-07 1.3E-11 95.5 16.1 168 146-317 402-583 (681)
99 3urz_A Uncharacterized protein 98.6 1.6E-06 5.4E-11 76.1 17.2 169 237-409 5-195 (208)
100 2ifu_A Gamma-SNAP; membrane fu 98.6 7.3E-07 2.5E-11 83.6 15.8 220 148-393 4-253 (307)
101 2vsy_A XCC0866; transferase, g 98.6 9.4E-07 3.2E-11 90.6 17.0 162 249-428 2-169 (568)
102 2r5s_A Uncharacterized protein 98.6 1.4E-06 4.7E-11 74.2 15.3 154 173-329 9-171 (176)
103 3dra_A Protein farnesyltransfe 98.6 2.9E-05 9.8E-10 72.0 24.7 220 214-449 46-286 (306)
104 2r5s_A Uncharacterized protein 98.6 1.2E-06 4.2E-11 74.5 14.5 158 274-449 9-172 (176)
105 3u3w_A Transcriptional activat 98.6 1.8E-05 6.3E-10 73.3 23.6 209 223-449 33-265 (293)
106 2yhc_A BAMD, UPF0169 lipoprote 98.6 3E-06 1E-10 75.3 17.4 182 236-452 4-215 (225)
107 3rjv_A Putative SEL1 repeat pr 98.6 7E-06 2.4E-10 72.2 19.1 160 200-368 17-199 (212)
108 3qou_A Protein YBBN; thioredox 98.6 3.7E-06 1.3E-10 77.9 18.1 163 233-397 114-280 (287)
109 3rjv_A Putative SEL1 repeat pr 98.5 3.7E-06 1.3E-10 74.0 16.9 141 118-265 4-158 (212)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.9E-06 1.3E-10 73.6 16.6 93 172-265 8-100 (213)
111 4ga2_A E3 SUMO-protein ligase 98.5 4E-07 1.4E-11 75.3 9.2 111 173-285 34-148 (150)
112 2vsy_A XCC0866; transferase, g 98.5 2.7E-06 9.1E-11 87.3 17.1 147 149-298 3-155 (568)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 2.4E-06 8.3E-11 80.0 15.4 169 214-398 29-221 (307)
114 3u3w_A Transcriptional activat 98.5 1.5E-05 5E-10 74.1 20.1 61 304-364 198-264 (293)
115 2yhc_A BAMD, UPF0169 lipoprote 98.5 7.2E-06 2.5E-10 72.8 17.2 60 171-230 5-70 (225)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.5 9.1E-06 3.1E-10 71.2 17.7 125 273-398 8-147 (213)
117 1a17_A Serine/threonine protei 98.4 8.2E-06 2.8E-10 68.1 15.4 130 303-449 14-145 (166)
118 4gco_A Protein STI-1; structur 98.4 7.4E-06 2.5E-10 65.3 14.0 110 303-429 14-123 (126)
119 4e6h_A MRNA 3'-END-processing 98.4 2.9E-05 1E-09 80.2 21.9 126 238-365 436-569 (679)
120 3gyz_A Chaperone protein IPGC; 98.4 3.9E-06 1.3E-10 69.2 12.3 98 338-451 37-134 (151)
121 3gw4_A Uncharacterized protein 98.4 6.5E-06 2.2E-10 71.4 14.5 80 248-328 4-92 (203)
122 3gw4_A Uncharacterized protein 98.4 3.6E-06 1.2E-10 73.1 12.8 62 201-262 26-92 (203)
123 3dra_A Protein farnesyltransfe 98.4 0.00018 6.2E-09 66.6 24.4 212 151-365 49-286 (306)
124 1na0_A Designed protein CTPR3; 98.4 1.4E-05 4.8E-10 62.7 14.6 94 303-398 10-103 (125)
125 2qfc_A PLCR protein; TPR, HTH, 98.4 1.7E-05 5.8E-10 73.6 17.2 25 205-229 79-103 (293)
126 1p5q_A FKBP52, FK506-binding p 98.3 9E-06 3.1E-10 77.1 14.8 129 304-448 149-292 (336)
127 2uy1_A Cleavage stimulation fa 98.3 0.0011 3.7E-08 66.2 30.4 203 218-449 196-412 (493)
128 2c2l_A CHIP, carboxy terminus 98.3 3.9E-05 1.3E-09 70.6 18.5 192 235-450 3-199 (281)
129 2lni_A Stress-induced-phosphop 98.3 1.6E-05 5.4E-10 63.4 14.0 118 301-435 15-132 (133)
130 1na0_A Designed protein CTPR3; 98.3 1.5E-05 5.2E-10 62.5 13.5 61 203-264 45-105 (125)
131 2vyi_A SGTA protein; chaperone 98.3 1.6E-05 5.5E-10 63.0 13.6 118 303-437 13-130 (131)
132 1a17_A Serine/threonine protei 98.3 2.2E-05 7.5E-10 65.4 14.5 90 204-295 16-105 (166)
133 4gco_A Protein STI-1; structur 98.3 1.5E-05 5.2E-10 63.4 12.6 93 172-265 15-110 (126)
134 2vgx_A Chaperone SYCD; alterna 98.3 3.7E-06 1.3E-10 69.2 9.2 99 337-451 21-119 (148)
135 2qfc_A PLCR protein; TPR, HTH, 98.3 0.00013 4.5E-09 67.5 20.8 161 238-398 77-263 (293)
136 2fbn_A 70 kDa peptidylprolyl i 98.2 3.1E-06 1.1E-10 73.5 8.5 157 279-451 12-187 (198)
137 2lni_A Stress-induced-phosphop 98.2 2.2E-05 7.4E-10 62.6 12.4 60 203-263 52-111 (133)
138 2c2l_A CHIP, carboxy terminus 98.2 1.1E-05 3.8E-10 74.4 11.9 189 200-398 3-196 (281)
139 2vyi_A SGTA protein; chaperone 98.2 2.4E-05 8.2E-10 61.9 12.4 62 202-264 47-108 (131)
140 3q7a_A Farnesyltransferase alp 98.2 0.00084 2.9E-08 62.9 24.3 229 209-450 62-331 (349)
141 3gyz_A Chaperone protein IPGC; 98.2 1.4E-05 4.8E-10 65.8 10.9 92 172-264 38-132 (151)
142 4f3v_A ESX-1 secretion system 98.2 6.7E-05 2.3E-09 68.0 15.8 120 244-365 110-236 (282)
143 2xcb_A PCRH, regulatory protei 98.1 2.9E-05 1E-09 63.1 12.2 96 339-450 20-115 (142)
144 3upv_A Heat shock protein STI1 98.1 4E-05 1.4E-09 60.7 12.0 96 339-450 6-101 (126)
145 2e2e_A Formate-dependent nitri 98.1 3.1E-05 1.1E-09 65.6 11.9 115 249-365 23-143 (177)
146 1p5q_A FKBP52, FK506-binding p 98.1 4.9E-05 1.7E-09 72.0 13.9 120 201-321 147-283 (336)
147 2e2e_A Formate-dependent nitri 98.1 2.3E-05 7.9E-10 66.4 10.5 114 149-264 24-143 (177)
148 4f3v_A ESX-1 secretion system 98.1 0.00014 4.6E-09 66.0 15.9 181 114-298 20-235 (282)
149 3q49_B STIP1 homology and U bo 98.1 7.1E-05 2.4E-09 60.1 13.0 100 335-450 7-106 (137)
150 2fbn_A 70 kDa peptidylprolyl i 98.0 1.1E-05 3.8E-10 69.9 8.0 121 176-297 10-148 (198)
151 2kck_A TPR repeat; tetratricop 98.0 4.3E-05 1.5E-09 58.5 10.7 98 338-451 7-107 (112)
152 3sz7_A HSC70 cochaperone (SGT) 98.0 5.6E-05 1.9E-09 63.1 11.9 93 302-396 11-103 (164)
153 1elw_A TPR1-domain of HOP; HOP 98.0 0.00019 6.6E-09 55.3 14.3 94 303-398 5-98 (118)
154 3q7a_A Farnesyltransferase alp 98.0 0.0018 6.2E-08 60.7 23.0 131 152-285 71-215 (349)
155 1elw_A TPR1-domain of HOP; HOP 98.0 0.00015 5.1E-09 56.0 13.1 21 241-261 77-97 (118)
156 4b4t_Q 26S proteasome regulato 98.0 0.00046 1.6E-08 67.6 19.3 163 274-449 58-244 (434)
157 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00017 5.7E-09 60.1 13.8 97 269-366 9-108 (164)
158 1hxi_A PEX5, peroxisome target 98.0 5.2E-05 1.8E-09 59.7 10.0 95 340-450 20-114 (121)
159 2vgx_A Chaperone SYCD; alterna 97.9 0.00012 4.1E-09 60.0 11.7 22 205-226 59-80 (148)
160 2dba_A Smooth muscle cell asso 97.9 0.00038 1.3E-08 56.3 14.5 95 301-398 27-125 (148)
161 3upv_A Heat shock protein STI1 97.9 0.00019 6.5E-09 56.7 12.1 24 305-328 75-98 (126)
162 2dba_A Smooth muscle cell asso 97.9 0.00022 7.7E-09 57.7 12.9 99 336-451 27-129 (148)
163 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.8E-09 72.1 13.6 131 304-450 270-415 (457)
164 3ro3_A PINS homolog, G-protein 97.9 9.1E-05 3.1E-09 61.0 10.4 134 304-450 11-158 (164)
165 2xcb_A PCRH, regulatory protei 97.9 0.00018 6E-09 58.4 11.8 87 207-295 24-110 (142)
166 4b4t_Q 26S proteasome regulato 97.8 0.00041 1.4E-08 68.0 16.5 25 204-228 58-82 (434)
167 2kck_A TPR repeat; tetratricop 97.8 0.00013 4.4E-09 55.8 10.3 90 173-263 9-104 (112)
168 4gcn_A Protein STI-1; structur 97.8 0.00027 9.1E-09 56.1 12.3 22 308-329 89-110 (127)
169 4gcn_A Protein STI-1; structur 97.8 0.00021 7E-09 56.8 11.5 101 273-375 10-119 (127)
170 3q49_B STIP1 homology and U bo 97.8 0.00033 1.1E-08 56.0 13.0 61 203-264 11-71 (137)
171 1elr_A TPR2A-domain of HOP; HO 97.8 0.00016 5.3E-09 57.1 10.1 25 306-330 83-107 (131)
172 1elr_A TPR2A-domain of HOP; HO 97.8 0.00016 5.5E-09 57.0 10.1 93 136-229 5-107 (131)
173 1wao_1 Serine/threonine protei 97.7 7.9E-05 2.7E-09 74.2 9.4 118 311-445 15-134 (477)
174 3ro3_A PINS homolog, G-protein 97.7 0.00014 4.9E-09 59.7 9.6 24 204-227 12-35 (164)
175 3dss_A Geranylgeranyl transfer 97.7 0.0077 2.6E-07 56.0 22.0 180 253-450 91-304 (331)
176 3k9i_A BH0479 protein; putativ 97.7 4E-05 1.4E-09 59.9 5.6 86 350-450 3-90 (117)
177 1hxi_A PEX5, peroxisome target 97.7 0.00024 8.2E-09 55.8 9.8 92 204-297 20-111 (121)
178 2xev_A YBGF; tetratricopeptide 97.7 0.00057 1.9E-08 53.9 11.8 91 344-450 9-105 (129)
179 2hr2_A Hypothetical protein; a 97.6 0.00043 1.5E-08 56.6 10.7 98 343-450 17-131 (159)
180 3dss_A Geranylgeranyl transfer 97.6 0.0092 3.1E-07 55.5 21.0 247 147-432 41-320 (331)
181 3rkv_A Putative peptidylprolyl 97.6 0.00036 1.2E-08 57.9 10.6 65 371-450 62-126 (162)
182 1ihg_A Cyclophilin 40; ppiase 97.6 0.0004 1.4E-08 66.6 11.9 90 337-442 273-362 (370)
183 1wao_1 Serine/threonine protei 97.6 0.00038 1.3E-08 69.3 11.5 114 180-295 16-134 (477)
184 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00023 7.9E-09 67.4 9.5 149 271-450 179-328 (338)
185 2xev_A YBGF; tetratricopeptide 97.6 0.0021 7.2E-08 50.5 13.6 89 307-398 7-102 (129)
186 3n71_A Histone lysine methyltr 97.5 0.001 3.4E-08 66.0 13.4 133 311-451 318-465 (490)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0011 3.9E-08 65.4 13.6 121 201-322 268-405 (457)
188 1ihg_A Cyclophilin 40; ppiase 97.5 0.00085 2.9E-08 64.3 11.7 117 172-290 225-360 (370)
189 2uy1_A Cleavage stimulation fa 97.4 0.017 5.9E-07 57.4 21.3 202 116-329 195-411 (493)
190 3k9i_A BH0479 protein; putativ 97.4 0.00027 9.3E-09 55.0 6.3 84 147-230 2-90 (117)
191 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00092 3.2E-08 63.2 10.8 142 171-330 180-327 (338)
192 1dce_A Protein (RAB geranylger 97.4 0.0066 2.2E-07 61.6 17.7 170 252-439 45-244 (567)
193 3rkv_A Putative peptidylprolyl 97.3 0.0017 5.9E-08 53.7 10.9 95 135-229 11-125 (162)
194 3n71_A Histone lysine methyltr 97.2 0.00094 3.2E-08 66.2 9.6 62 304-365 395-463 (490)
195 2hr2_A Hypothetical protein; a 97.2 0.0051 1.8E-07 50.2 11.7 61 204-264 14-85 (159)
196 1klx_A Cysteine rich protein B 97.2 0.0075 2.6E-07 48.3 12.7 109 115-231 10-127 (138)
197 2kat_A Uncharacterized protein 97.1 0.0031 1.1E-07 48.5 9.6 79 356-450 4-82 (115)
198 2l6j_A TPR repeat-containing p 97.1 0.0005 1.7E-08 52.5 4.9 60 204-264 7-66 (111)
199 3ma5_A Tetratricopeptide repea 97.1 0.0023 8E-08 48.0 8.4 66 370-450 5-70 (100)
200 2l6j_A TPR repeat-containing p 97.1 0.0007 2.4E-08 51.6 5.5 94 302-398 4-104 (111)
201 1na3_A Designed protein CTPR2; 97.0 0.0047 1.6E-07 44.8 9.5 57 339-396 11-67 (91)
202 1na3_A Designed protein CTPR2; 96.9 0.0083 2.8E-07 43.4 10.2 77 203-281 11-87 (91)
203 1klx_A Cysteine rich protein B 96.9 0.023 7.8E-07 45.4 13.1 108 216-331 10-126 (138)
204 2kat_A Uncharacterized protein 96.8 0.0066 2.3E-07 46.6 9.2 75 220-296 4-78 (115)
205 3qwp_A SET and MYND domain-con 96.8 0.0074 2.5E-07 58.8 10.9 126 344-495 294-427 (429)
206 3bee_A Putative YFRE protein; 96.6 0.01 3.5E-07 43.7 8.3 70 369-453 3-75 (93)
207 1zu2_A Mitochondrial import re 96.6 0.0024 8.4E-08 52.0 5.2 95 348-451 13-121 (158)
208 1dce_A Protein (RAB geranylger 96.6 0.14 4.7E-06 51.9 19.2 164 187-353 46-242 (567)
209 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.4E-06 54.6 18.8 156 209-399 607-763 (814)
210 3qww_A SET and MYND domain-con 96.4 0.01 3.6E-07 57.7 9.1 93 349-449 310-410 (433)
211 3ma5_A Tetratricopeptide repea 96.3 0.02 6.7E-07 42.7 8.6 60 202-262 8-67 (100)
212 1zu2_A Mitochondrial import re 96.2 0.0053 1.8E-07 50.0 4.9 55 188-244 64-132 (158)
213 3mkq_A Coatomer beta'-subunit; 96.1 0.35 1.2E-05 51.2 20.3 45 181-227 663-707 (814)
214 3qwp_A SET and MYND domain-con 95.8 0.072 2.5E-06 51.8 11.7 90 309-398 294-397 (429)
215 3qww_A SET and MYND domain-con 95.7 0.021 7.2E-07 55.5 7.8 61 304-364 342-409 (433)
216 1pc2_A Mitochondria fission pr 95.6 0.15 5.2E-06 41.0 10.9 82 353-450 14-100 (152)
217 3ly7_A Transcriptional activat 95.5 0.18 6E-06 47.3 12.7 64 200-265 276-339 (372)
218 3mkq_B Coatomer subunit alpha; 95.2 1.1 3.6E-05 37.0 16.0 104 279-399 13-116 (177)
219 2kc7_A BFR218_protein; tetratr 95.2 0.073 2.5E-06 39.1 7.7 58 208-266 7-65 (99)
220 1wy6_A Hypothetical protein ST 95.2 0.76 2.6E-05 35.7 12.8 83 184-268 75-157 (172)
221 3ly7_A Transcriptional activat 95.0 0.34 1.2E-05 45.4 12.7 73 300-376 275-347 (372)
222 1wy6_A Hypothetical protein ST 94.8 1.1 3.8E-05 34.9 13.6 140 212-369 18-157 (172)
223 2kc7_A BFR218_protein; tetratr 94.8 0.17 5.7E-06 37.1 8.6 58 308-366 6-64 (99)
224 1pc2_A Mitochondria fission pr 94.7 0.26 8.9E-06 39.6 9.8 79 318-398 14-97 (152)
225 2v5f_A Prolyl 4-hydroxylase su 94.0 0.43 1.5E-05 35.5 9.4 63 336-398 4-72 (104)
226 3lvg_A Clathrin heavy chain 1; 93.3 0.0016 5.6E-08 62.3 -6.4 244 170-442 54-325 (624)
227 2v5f_A Prolyl 4-hydroxylase su 92.9 0.88 3E-05 33.8 9.5 63 203-265 7-75 (104)
228 3u64_A Protein TP_0956; tetrat 92.7 0.72 2.5E-05 41.4 9.9 85 353-454 179-273 (301)
229 3bee_A Putative YFRE protein; 92.5 0.85 2.9E-05 33.2 8.6 27 304-330 45-71 (93)
230 2uwj_G Type III export protein 92.0 2.5 8.6E-05 30.6 9.9 88 149-241 20-107 (115)
231 2p58_C Putative type III secre 91.9 2.7 9.3E-05 30.5 10.4 88 149-241 21-108 (116)
232 3mkq_B Coatomer subunit alpha; 90.8 6 0.00021 32.5 18.3 130 244-399 13-142 (177)
233 1nzn_A CGI-135 protein, fissio 90.7 1.7 5.9E-05 33.5 8.8 84 313-398 12-100 (126)
234 1nzn_A CGI-135 protein, fissio 90.6 4.7 0.00016 31.0 11.4 89 348-450 12-103 (126)
235 3lvg_A Clathrin heavy chain 1; 89.7 0.022 7.6E-07 54.7 -3.0 253 43-324 39-326 (624)
236 2ff4_A Probable regulatory pro 88.3 4.6 0.00016 38.3 12.0 69 305-374 174-247 (388)
237 4b4t_P 26S proteasome regulato 87.3 22 0.00075 34.4 17.0 50 215-264 30-84 (445)
238 1v54_E Cytochrome C oxidase po 87.3 5.8 0.0002 29.0 8.8 63 115-178 25-87 (109)
239 3u64_A Protein TP_0956; tetrat 86.7 4.4 0.00015 36.4 9.9 66 304-369 201-272 (301)
240 1v54_E Cytochrome C oxidase po 86.2 4.2 0.00014 29.7 7.6 63 317-380 25-87 (109)
241 2ff4_A Probable regulatory pro 85.6 4 0.00014 38.8 9.9 78 341-419 175-260 (388)
242 4gns_B Protein CSD3, chitin bi 84.9 3.8 0.00013 42.4 9.8 54 379-447 344-397 (754)
243 3lpz_A GET4 (YOR164C homolog); 84.4 25 0.00085 32.3 21.6 167 172-364 37-214 (336)
244 4h7y_A Dual specificity protei 84.2 8.7 0.0003 30.6 9.3 97 300-398 11-120 (161)
245 1qsa_A Protein (soluble lytic 83.5 41 0.0014 34.0 26.7 267 156-448 57-346 (618)
246 2uwj_G Type III export protein 83.5 11 0.00037 27.4 8.9 85 251-340 21-105 (115)
247 4fhn_B Nucleoporin NUP120; pro 83.3 32 0.0011 37.9 17.1 144 243-393 819-992 (1139)
248 2p58_C Putative type III secre 83.0 11 0.00039 27.3 9.5 78 251-332 22-99 (116)
249 4b4t_P 26S proteasome regulato 82.5 36 0.0012 32.8 20.5 187 184-398 30-244 (445)
250 4fhn_B Nucleoporin NUP120; pro 81.8 41 0.0014 37.1 17.1 81 239-319 902-988 (1139)
251 2y69_E Cytochrome C oxidase su 81.6 11 0.00039 29.1 8.7 63 115-178 68-130 (152)
252 2wpv_A GET4, UPF0363 protein Y 81.1 32 0.0011 31.2 22.5 167 172-364 35-215 (312)
253 3txn_A 26S proteasome regulato 80.7 39 0.0013 31.9 17.4 125 273-398 21-165 (394)
254 2y69_E Cytochrome C oxidase su 80.3 8.5 0.00029 29.8 7.6 63 317-380 68-130 (152)
255 4h7y_A Dual specificity protei 77.3 26 0.00088 27.9 11.7 54 215-269 74-127 (161)
256 4gns_B Protein CSD3, chitin bi 76.7 15 0.00053 38.0 10.9 53 245-298 346-398 (754)
257 3o48_A Mitochondria fission 1 75.1 27 0.00091 27.1 10.7 73 332-404 35-111 (134)
258 3lpz_A GET4 (YOR164C homolog); 72.5 59 0.002 29.8 21.6 165 272-449 36-215 (336)
259 3ffl_A Anaphase-promoting comp 71.3 35 0.0012 27.6 9.5 112 275-399 24-149 (167)
260 3esl_A Checkpoint serine/threo 69.2 50 0.0017 27.7 10.7 80 385-502 92-171 (202)
261 3ffl_A Anaphase-promoting comp 68.0 41 0.0014 27.2 9.2 116 331-447 12-148 (167)
262 3ltj_A Alpharep-4; protein eng 68.0 50 0.0017 27.2 17.2 48 169-216 58-105 (201)
263 4ady_A RPN2, 26S proteasome re 67.1 1.4E+02 0.0047 31.9 19.1 154 246-404 500-661 (963)
264 1y8m_A FIS1; mitochondria, unk 65.5 47 0.0016 26.0 11.4 71 333-403 35-109 (144)
265 3o48_A Mitochondria fission 1 63.1 35 0.0012 26.4 7.6 64 302-365 40-106 (134)
266 2wpv_A GET4, UPF0363 protein Y 61.4 95 0.0032 28.1 19.8 166 272-449 34-216 (312)
267 1zbp_A Hypothetical protein VP 58.5 21 0.00073 31.5 6.4 44 248-292 9-52 (273)
268 1wdy_A 2-5A-dependent ribonucl 57.8 38 0.0013 29.5 8.6 49 351-399 193-243 (285)
269 1k1a_A B-cell lymphoma 3-encod 57.8 27 0.00091 29.8 7.3 54 142-195 13-68 (241)
270 2ion_A PDCD4, programmed cell 57.8 61 0.0021 25.7 8.6 63 273-335 11-78 (152)
271 2nsz_A Programmed cell death p 56.8 64 0.0022 24.7 10.0 64 273-336 9-77 (129)
272 4b4t_R RPN7, 26S proteasome re 55.6 1.3E+02 0.0044 28.7 12.3 258 238-502 133-422 (429)
273 1y8m_A FIS1; mitochondria, unk 54.7 76 0.0026 24.9 14.0 95 368-503 35-133 (144)
274 1wdy_A 2-5A-dependent ribonucl 54.3 22 0.00074 31.2 6.2 238 140-396 7-274 (285)
275 1zbp_A Hypothetical protein VP 53.5 67 0.0023 28.3 8.7 56 310-366 5-60 (273)
276 2pk8_A Uncharacterized protein 53.2 11 0.00038 26.7 2.9 26 478-503 13-38 (103)
277 4b4t_R RPN7, 26S proteasome re 52.7 67 0.0023 30.7 9.7 95 304-398 133-234 (429)
278 3eiq_C Programmed cell death p 51.0 1.5E+02 0.0051 27.4 11.2 183 205-389 58-305 (358)
279 3ltm_A Alpha-REP4; protein eng 47.5 1.2E+02 0.004 25.0 20.1 49 168-216 31-79 (211)
280 3eu9_A Huntingtin-interacting 46.0 24 0.00083 29.9 5.0 17 346-362 216-232 (240)
281 1ug3_A EIF4GI, eukaryotic prot 42.9 1.4E+02 0.0047 27.4 9.8 25 375-399 144-168 (339)
282 4ady_A RPN2, 26S proteasome re 42.7 3.4E+02 0.012 29.0 22.1 217 179-398 383-620 (963)
283 2d2s_A Exocyst complex compone 41.6 1.2E+02 0.0039 26.2 8.4 28 370-397 89-116 (235)
284 4g8k_A 2-5A-dependent ribonucl 41.0 1E+02 0.0036 27.7 8.8 236 120-372 38-329 (337)
285 3ltm_A Alpha-REP4; protein eng 41.0 1.5E+02 0.0051 24.4 20.6 79 134-216 32-110 (211)
286 3ljn_A Hypothetical protein; a 39.6 71 0.0024 29.3 7.5 96 133-233 16-113 (364)
287 3txn_A 26S proteasome regulato 39.6 2.4E+02 0.0084 26.4 28.8 81 369-452 253-345 (394)
288 3ltj_A Alpharep-4; protein eng 39.6 1.5E+02 0.0052 24.1 21.4 117 192-316 50-166 (201)
289 1k1a_A B-cell lymphoma 3-encod 37.7 76 0.0026 26.7 6.9 175 210-397 15-205 (241)
290 2nsz_A Programmed cell death p 37.5 1.4E+02 0.0046 22.8 7.9 23 205-227 11-33 (129)
291 2d2s_A Exocyst complex compone 37.3 1.2E+02 0.004 26.2 7.8 22 207-228 24-45 (235)
292 3kea_A K1L; tropism, ANK repea 36.5 45 0.0016 29.5 5.4 49 143-195 36-84 (285)
293 2r9g_A AAA ATPase, central reg 36.1 1.9E+02 0.0065 24.1 9.2 65 203-268 13-85 (204)
294 3hra_A Ankyrin repeat family p 35.8 80 0.0027 25.7 6.6 18 179-196 11-28 (201)
295 3esl_A Checkpoint serine/threo 35.0 2E+02 0.0068 24.0 10.6 57 214-270 92-149 (202)
296 1mzb_A Ferric uptake regulatio 34.9 1.4E+02 0.0047 22.9 7.3 61 125-186 8-69 (136)
297 3ygs_P Procaspase 9; apoptosis 34.9 92 0.0032 22.4 5.8 64 156-221 25-88 (97)
298 2fu4_A Ferric uptake regulatio 34.4 1.1E+02 0.0037 20.8 7.3 62 124-186 6-68 (83)
299 2xig_A Ferric uptake regulatio 34.3 1.7E+02 0.0057 23.0 7.9 63 123-186 15-77 (150)
300 3bge_A Predicted ATPase; struc 34.2 2E+02 0.0069 23.9 8.3 47 204-250 7-56 (201)
301 2ion_A PDCD4, programmed cell 34.1 1.1E+02 0.0038 24.2 6.6 23 205-227 13-35 (152)
302 2w57_A Ferric uptake regulatio 34.0 1.6E+02 0.0053 23.1 7.6 62 124-186 6-68 (150)
303 1oai_A Nuclear RNA export fact 33.2 30 0.001 22.3 2.5 22 115-136 35-57 (59)
304 3jxi_A Vanilloid receptor-rela 32.0 51 0.0017 28.5 4.9 185 208-398 9-248 (260)
305 3kea_A K1L; tropism, ANK repea 31.8 49 0.0017 29.3 4.8 96 121-220 45-145 (285)
306 2zu6_B Programmed cell death p 31.5 2.9E+02 0.0099 24.8 11.8 199 173-374 6-239 (307)
307 2xig_A Ferric uptake regulatio 31.1 1.9E+02 0.0065 22.6 8.1 61 225-286 16-76 (150)
308 3ygs_P Procaspase 9; apoptosis 31.1 71 0.0024 23.0 4.6 39 285-323 51-89 (97)
309 2wvi_A Mitotic checkpoint seri 30.7 1.4E+02 0.0048 24.0 6.6 50 119-168 79-129 (164)
310 2ijq_A Hypothetical protein; s 30.6 2E+02 0.0067 23.1 7.4 54 312-365 42-103 (161)
311 2fe3_A Peroxide operon regulat 30.2 1.9E+02 0.0066 22.4 7.9 61 225-286 11-71 (145)
312 1mzb_A Ferric uptake regulatio 30.1 1.8E+02 0.0063 22.2 7.7 60 226-286 8-68 (136)
313 2w57_A Ferric uptake regulatio 29.4 2E+02 0.007 22.4 7.6 62 225-287 6-68 (150)
314 4a1g_A Mitotic checkpoint seri 29.2 2.1E+02 0.0073 22.6 9.1 121 90-213 18-144 (152)
315 2p1h_A APAF-1, apoptotic prote 28.6 1.5E+02 0.0053 20.8 6.8 63 154-220 24-86 (94)
316 3ctd_A Putative ATPase, AAA fa 28.5 2.6E+02 0.009 23.4 8.3 69 200-268 31-107 (213)
317 4b4t_S RPN3, 26S proteasome re 28.4 3.7E+02 0.013 26.3 10.3 59 171-229 232-298 (523)
318 2keb_A DNA polymerase subunit 27.1 1.8E+02 0.0061 21.0 6.4 56 321-378 28-88 (101)
319 3qye_A TBC1 domain family memb 27.1 3.5E+02 0.012 24.4 10.9 130 115-251 164-309 (331)
320 2p1h_A APAF-1, apoptotic prote 26.6 1.7E+02 0.0058 20.6 7.6 63 255-321 24-86 (94)
321 2r9g_A AAA ATPase, central reg 25.8 2.9E+02 0.0099 23.0 9.2 61 308-369 17-85 (204)
322 4gq2_M Nucleoporin NUP120; bet 24.6 6.6E+02 0.023 26.8 13.0 51 277-328 816-866 (950)
323 3eyy_A Putative iron uptake re 24.2 2E+02 0.0068 22.3 6.5 60 225-286 8-67 (145)
324 2fe3_A Peroxide operon regulat 24.1 1.8E+02 0.0062 22.5 6.3 48 203-250 23-70 (145)
325 2keb_A DNA polymerase subunit 24.0 2.1E+02 0.007 20.7 6.1 40 355-396 27-66 (101)
326 3eyy_A Putative iron uptake re 23.9 1.5E+02 0.0052 23.0 5.8 61 124-186 8-68 (145)
327 4gq2_M Nucleoporin NUP120; bet 23.4 7E+02 0.024 26.6 12.9 127 176-316 816-950 (950)
328 4ets_A Ferric uptake regulatio 23.0 2.8E+02 0.0097 22.0 7.7 71 115-186 12-85 (162)
329 4b4t_S RPN3, 26S proteasome re 22.4 5.5E+02 0.019 25.1 11.3 21 433-453 412-432 (523)
330 3bge_A Predicted ATPase; struc 22.3 3.4E+02 0.012 22.5 8.3 60 308-367 10-77 (201)
331 1ug3_A EIF4GI, eukaryotic prot 22.3 4.4E+02 0.015 23.9 12.7 26 174-199 15-40 (339)
332 4aez_C MAD3, mitotic spindle c 21.8 2.3E+02 0.0079 24.1 6.6 77 131-210 113-190 (223)
333 2ijq_A Hypothetical protein; s 21.0 3.2E+02 0.011 21.8 7.5 60 204-264 36-103 (161)
334 2fu4_A Ferric uptake regulatio 20.9 2E+02 0.0068 19.4 7.5 61 225-286 6-67 (83)
335 3b7b_A Euchromatic histone-lys 20.7 97 0.0033 26.0 4.4 18 348-365 218-235 (237)
336 3bu8_A Telomeric repeat-bindin 20.6 3.9E+02 0.013 22.6 10.4 93 104-197 23-141 (235)
337 3jxi_A Vanilloid receptor-rela 20.2 74 0.0025 27.4 3.6 54 142-195 9-71 (260)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=9.6e-31 Score=272.10 Aligned_cols=404 Identities=11% Similarity=-0.028 Sum_probs=329.6
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCc-hhhhhhhhhcCCccC
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFG-SSNVFDQLLDTPVVD 115 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 115 (519)
+.+.+.|++++|..+|+.+... .|+...+..+...+...+ ....+...+......+.... ...+...+...+ +
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 165 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY--D 165 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHHHHHh--h
Confidence 3344899999999999998632 234466677777777664 45566666666543222222 223334444443 9
Q ss_pred HHHHHHHHHHHhHC---------------CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH--------
Q 044422 116 VEKLISMHHDLHRE---------------RLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV-------- 172 (519)
Q Consensus 116 ~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------- 172 (519)
+++|+++|+++... |.+++..+|+.++.+|.+.|++++|..+|+.|.+.+. .+...
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNH 244 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhh
Confidence 99999999954322 3345688999999999999999999999999988752 22333
Q ss_pred ------------------------------HHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHH
Q 044422 173 ------------------------------GSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 173 ------------------------------~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a 220 (519)
|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 33336667788999999999999986 8899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG- 299 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 299 (519)
..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998765 3467789999999999999999999999998764 66788999999999999999999999998753
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 044422 300 --KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377 (519)
Q Consensus 300 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 377 (519)
.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 480 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNE 480 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 467899999999999999999999999998864 4478899999999999999999999999998754 447889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHH-----------------HHHHHhhhcCCCCchhHHHHHHHH
Q 044422 378 VVDLLGRAGLLEEARDFIKQM-------PIYPN--AVIW-----------------EAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
++..|.+.|++++|.++|+++ +..|+ ..+| ..++++++..|.++.+|..|+.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999987 44677 5555 456777888999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHCC
Q 044422 432 AGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~g 451 (519)
.+.|++++|.+.|+++.+..
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.3e-30 Score=257.77 Aligned_cols=212 Identities=11% Similarity=0.114 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhHCCCCCCHH-HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 117 EKLISMHHDLHRERLKVDAS-FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556677787777665544 58889999999999999999999999999999999999999999988765332
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 196 MPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 196 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
.+.+.+++|.++|++|...|+.||..||++||.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345578899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMH----GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 350 (519)
++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888885 3688888888888888888888888888888888888888888888887754
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.6e-29 Score=253.68 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------chHHHHHHHHHHHcCCCCcHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA---------LGQGRSAHCQTIRMGFFSYIQ 272 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 272 (519)
..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999998765 578999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR 348 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 348 (519)
+|+++|.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 349 HGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
+.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998763
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-28 Score=254.93 Aligned_cols=383 Identities=9% Similarity=-0.031 Sum_probs=312.4
Q ss_pred cccccceeecccchhhhhhccCccchhhHHhhhhhcCCCC--------------CCCchHHHHHHHHHHHhhccccccch
Q 044422 20 SLKTLSIIYRSFCSQKLKQISSSKSLHKALRVLDIISPRT--------------RDSTKTEVHLRLIQDFLQTDSKHLDS 85 (519)
Q Consensus 20 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~~~ 85 (519)
+..+++.+...++ +.|++++|..+|+.+.+.. +.+.+...+..+...+...+ ....+
T Consensus 149 ~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A 219 (597)
T 2xpi_A 149 SSACRYLAAFCLV--------KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRA 219 (597)
T ss_dssp CHHHHHHHHHHHH--------HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred chhHHHHHHHHHH--------HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHH
Confidence 3445666666777 8999999999999654333 33557788888888887774 45556
Q ss_pred hhhcccCCCCCCCCchhhhh------------------------------------h--hhhcCCccCHHHHHHHHHHHh
Q 044422 86 QKFNHDFTGTNSTFGSSNVF------------------------------------D--QLLDTPVVDVEKLISMHHDLH 127 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~------------------------------------~--~~~~~~~~~~~~A~~~~~~m~ 127 (519)
...+..+....+........ . ...-...+++++|+++|+.+.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 66665555433332211100 0 001123347899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHH
Q 044422 128 RERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSW 204 (519)
Q Consensus 128 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~ 204 (519)
+. +++..+++.++..+.+.|++++|..+|+.+.+.+ +.+..+++.++.+|.+.|++++|..+|+++. ..+..+|
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 65 5799999999999999999999999999998876 4477889999999999999999999999885 4578899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++++.+.+.+ +.+..+|+.++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 999999999999999999999998753 3467899999999999999999999999998875 56788999999999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHH
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RVKPD--AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~t~~~ll~~~~~~g~~~~ 355 (519)
|++++|.++|+.+.+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998764 47889999999999999999999999999876 66787 7899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHh
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYA 432 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 432 (519)
|..+++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++ ++++|.++.++..|..+|.
T Consensus 535 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 535 AIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES---------------LAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HhcCCCChHHHHHHHHHHh
Confidence 999999998765 447889999999999999999999988754 5677888888888877764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.9e-23 Score=203.75 Aligned_cols=352 Identities=12% Similarity=0.077 Sum_probs=296.8
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|.+.+..+.... +.+...+..+-..+...+ ++++|.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~-----------------------------------~~~~a~ 53 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCR-----------------------------------RLDRSA 53 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-----------------------------------CHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 6799999999998875322 222233333333333333 889999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--C
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--V 198 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 198 (519)
..++...+.. +.+..+|..+...+.+.|++++|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++. .
T Consensus 54 ~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 54 HFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999888753 5588899999999999999999999999998864 4456689999999999999999999999886 3
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 044422 199 R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277 (519)
Q Consensus 199 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (519)
| +...+..+...+...|++++|...|+++.+.. +-+..+|..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4 45577888889999999999999999998764 3457889999999999999999999999999875 5567899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
...+...|++++|...|++..+ | +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|+++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987653 3 57889999999999999999999999999864 235678999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhcc
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGV 434 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 434 (519)
+|...++++.+.. +.+..++..+...+.+.|++++|.+.++++ ++..|.+..++..++.+|.+.
T Consensus 289 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA---------------LEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH---------------TTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhcCCCcHHHHHHHHHHHHHc
Confidence 9999999999763 567889999999999999999999998865 345677777888899999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 044422 435 RCWDQAARVRKLMKDK 450 (519)
Q Consensus 435 g~~~~A~~~~~~m~~~ 450 (519)
|++++|.+.|+++.+.
T Consensus 353 g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999864
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2.8e-21 Score=189.52 Aligned_cols=338 Identities=12% Similarity=0.100 Sum_probs=286.7
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|...++.... ..+.....+..+-..+...+ ++++|+
T Consensus 45 ~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g-----------------------------------~~~~A~ 87 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERG-----------------------------------QLQEAI 87 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHT-----------------------------------CHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCC-----------------------------------CHHHHH
Confidence 67889999988877652 23445566777777776666 999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP--- 197 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 197 (519)
+.|+++.+.. +.+..+|..+..++.+.|++++|...+..+.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999998753 3356689999999999999999999999998874 3355678888999999999999999999886
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 044422 198 VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSL 277 (519)
Q Consensus 198 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (519)
+.+..+|+.+...+.+.|++++|...|+++.+.+ +-+...+..+...+...|++++|...++...+.. +.+..++..+
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 243 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHH
Confidence 3457889999999999999999999999998864 3457788999999999999999999999998875 5568899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
..+|.+.|++++|.+.|+++.+ | +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998764 3 56789999999999999999999999998863 557889999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhcc
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGV 434 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 434 (519)
+|...++++.+.. +.+..++..+...|.+.|++++|.+.++++ ++++|.++.+|..+...+...
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA---------------IRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH---------------HTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhhCCCCHHHHHhHHHHHHHc
Confidence 9999999998753 446788999999999999999999988865 456677777888888877766
Q ss_pred CC
Q 044422 435 RC 436 (519)
Q Consensus 435 g~ 436 (519)
|+
T Consensus 387 ~~ 388 (388)
T 1w3b_A 387 QD 388 (388)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2.7e-20 Score=186.17 Aligned_cols=312 Identities=11% Similarity=0.055 Sum_probs=244.9
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC--
Q 044422 120 ISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP-- 197 (519)
Q Consensus 120 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 197 (519)
...|...... -+.+...+..+...+.+.|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 12 ~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3334444433 24467788888889999999999999999998764 5578889999999999999999999998876
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCCchHHHHHHHH
Q 044422 198 -VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPND---FTFTSI------------LSACTGSGALGQGRSAHCQ 261 (519)
Q Consensus 198 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~l------------l~~~~~~g~~~~a~~~~~~ 261 (519)
+.+..+|..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...++.
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457788899999999999999999999998754 2233 455444 3448889999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H
Q 044422 262 TIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD-A 337 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~ 337 (519)
+.+.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...|...|++++|...|+++.+. .|+ .
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 88765 56788899999999999999999999998764 46788999999999999999999999998864 333 3
Q ss_pred HHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 044422 338 ITFLGV------------ISSCRHGGLVEEGKVYFDSMAKHGLKPE-----LDHYSCVVDLLGRAGLLEEARDFIKQMPI 400 (519)
Q Consensus 338 ~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 400 (519)
..+..+ ...|.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 321 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV-- 321 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 344443 67888999999999999999874 344 457788889999999999999888765
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNP 456 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 456 (519)
+...|.++.+|..++.+|...|++++|...+++..+. .|+.
T Consensus 322 -------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 362 (450)
T 2y4t_A 322 -------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NEND 362 (450)
T ss_dssp -------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC
T ss_pred -------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccch
Confidence 3556777788888999999999999999999998874 3444
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.7e-19 Score=180.24 Aligned_cols=311 Identities=8% Similarity=-0.016 Sum_probs=257.6
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+.+|+.+.+.. +.+..++..+..++...|+++.|...++.+.+.+ +.+..++..+..+|.+.|++++|...|+
T Consensus 41 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998753 4578899999999999999999999999999885 5567899999999999999999999999
Q ss_pred cCCC--C-Ch---hHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 195 EMPV--R-NV---VSWTAI------------IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 195 ~m~~--~-~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
++.. | +. ..+..+ ...+...|++++|...|+++.... +.+..++..+..++.+.|++++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 9864 3 23 555555 444899999999999999998764 457788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHH------------HHHHHHcCChHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSM------------IAGYAQHGLAVRA 321 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A 321 (519)
..++.+.+.. +.+..++..+...|...|++++|...|+.+.+ | +...+..+ ...+.+.|++++|
T Consensus 198 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 198 SDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998864 56789999999999999999999999998864 3 34445444 7889999999999
Q ss_pred HHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 322 IDLFEEMMKQRVKPD-----AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 322 ~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++
T Consensus 277 ~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 277 TSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999874 344 3478888999999999999999999998753 3468899999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH------------HHHhccC-----CHHHHHHHHHHH
Q 044422 397 QMPIYPNAVIWEAAESRLLLEPECAATHVQLA------------NLYAGVR-----CWDQAARVRKLM 447 (519)
Q Consensus 397 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~------------~~~~~~g-----~~~~A~~~~~~m 447 (519)
++ ++++|.++.++..|. ..|...| +.+++.+.++++
T Consensus 354 ~a---------------l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 354 TA---------------QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HH---------------HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HH---------------HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 66 344455555555555 3344445 566777777764
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.2e-19 Score=182.61 Aligned_cols=355 Identities=10% Similarity=-0.018 Sum_probs=269.3
Q ss_pred ccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHH
Q 044422 39 ISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEK 118 (519)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (519)
+...|++++|...|+.+.... |+...+..+...+...+ ++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g-----------------------------------~~~~ 57 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVG-----------------------------------DLKK 57 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHT-----------------------------------CHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHh-----------------------------------hHHH
Confidence 336899999999999886433 35667777777776666 8899
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCC-------------------------------
Q 044422 119 LISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFI------------------------------- 167 (519)
Q Consensus 119 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------------------------- 167 (519)
|+..|+.+.+.+ +.+...+..+..++...|++++|...|+.+.+.+-.
T Consensus 58 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 58 VVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888764 346678888888889999999999988888765410
Q ss_pred -----------------------------------------------ChHHHHHHHHHHHH---hCCCHHHHHHHHccCC
Q 044422 168 -----------------------------------------------ANVYVGSSLITLYS---KCRVIIDAYKVFEEMP 197 (519)
Q Consensus 168 -----------------------------------------------~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 197 (519)
.+...+..+...+. +.|++++|...|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 01222333333333 3788888888887754
Q ss_pred C-----------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 044422 198 V-----------------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHC 260 (519)
Q Consensus 198 ~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 260 (519)
. .+..+|..+...+...|++++|...|+++.+.. |+...+..+..++...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 134567778888888888888888888887754 337778888888888888888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 044422 261 QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA 337 (519)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 337 (519)
.+.+.. +.+..++..+...|...|++++|...|+...+ .+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 887764 45667888888888888888888888887643 356778888888888888888888888887653 2355
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGL-KPE----LDHYSCVVDLLGR---AGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
.++..+...+...|++++|...++++.+..- .++ ...+..+...+.. .|++++|...++.+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a----------- 441 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA----------- 441 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-----------
Confidence 6777888888888888888888888875321 111 3377788888888 88888888877754
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+...|.++.++..++.+|...|++++|...|++..+..
T Consensus 442 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 442 ----SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp ----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 45677888888999999999999999999999998864
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.8e-18 Score=174.41 Aligned_cols=315 Identities=9% Similarity=-0.051 Sum_probs=263.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+..|+++.+.+ |+...|..+..++.+.|+++.|...++.+.+.+ +.+..++..+..+|.+.|++++|...|+
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999865 799999999999999999999999999999875 5567899999999999999999999998
Q ss_pred cCCC--C-C-----------------------------------------------------------------------
Q 044422 195 EMPV--R-N----------------------------------------------------------------------- 200 (519)
Q Consensus 195 ~m~~--~-~----------------------------------------------------------------------- 200 (519)
++.. | +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 7631 1 1
Q ss_pred --------hhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHccCCchHHH
Q 044422 201 --------VVSWTAIIAAFAQ---EWQVDMCLELYRMMRN-----SML--------EPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 201 --------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
...+......+.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2223333333443 7999999999999987 311 223567888899999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (519)
..++.+.+... +..++..+...|...|++++|...++.+.+ .+..+|..+...+...|++++|...+++..+...
T Consensus 258 ~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 258 EDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 99999988753 388899999999999999999999998764 3667899999999999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 044422 334 KPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESR 413 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~ 413 (519)
. +..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 336 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--------------- 398 (514)
T 2gw1_A 336 E-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA--------------- 398 (514)
T ss_dssp S-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------
Confidence 3 56788889999999999999999999998753 346678889999999999999999988865
Q ss_pred hhcCCCCch------hHHHHHHHHhc---cCCHHHHHHHHHHHHHCC
Q 044422 414 LLLEPECAA------THVQLANLYAG---VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 414 ~~~~~~~~~------~~~~L~~~~~~---~g~~~~A~~~~~~m~~~g 451 (519)
+...|.++. ++..++.+|.. .|++++|...+++..+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 233444433 88889999999 999999999999998753
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.4e-17 Score=157.90 Aligned_cols=298 Identities=10% Similarity=0.032 Sum_probs=241.8
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
|...+..+...+...|+++.|...|+.+.+.. +.+..++..+..++...|++++|...|++.. +.+...|..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45567778888889999999999999998864 4567788889999999999999999998875 3466788899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLE--PNDFTFTSI------------LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS 276 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (519)
+...|++++|...|++..+.... .+...+..+ ...+...|++++|...++.+.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999998875310 233444444 578889999999999999998875 567888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH------------
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL------------ 341 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~------------ 341 (519)
+...+...|++++|...++.+.+ .+..++..+...+...|++++|...+++..+... .+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764 3678899999999999999999999999887532 2333332
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCcC-H----HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKHGLKPE-L----DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
.+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|.+.+++. ++.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~---------------~~~ 301 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV---------------LQM 301 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHh
Confidence 22556889999999999999998743 33 2 23556788999999999999988755 455
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|.++.++..++.+|...|++++|...|++..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78888899999999999999999999999998753
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=3.9e-17 Score=167.01 Aligned_cols=354 Identities=11% Similarity=0.067 Sum_probs=220.8
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|...|+...... +.+...+..+-..+...+ ++++|+
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g-----------------------------------~~~~A~ 79 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTG-----------------------------------DLEKVI 79 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-----------------------------------CHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 6677777777777764322 223445555555554544 788888
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCC----------------------------------
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGF---------------------------------- 166 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------------- 166 (519)
+.|+++.+.+ +.+...+..+..++...|+++.|...|+.+....-
T Consensus 80 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 80 EFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 8888887754 33667777778888888888888887753311100
Q ss_pred --CChHH------------------------------HHHHHHHHHHhC--------CCHHHHHHHHccCCC--CC----
Q 044422 167 --IANVY------------------------------VGSSLITLYSKC--------RVIIDAYKVFEEMPV--RN---- 200 (519)
Q Consensus 167 --~~~~~------------------------------~~~~li~~~~~~--------g~~~~A~~~~~~m~~--~~---- 200 (519)
.|+.. ....+...+... |++++|..+|+++.+ |+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 00000 111111111111 356666666666543 22
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH
Q 044422 201 ----VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS 276 (519)
Q Consensus 201 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (519)
..+|..+...+...|++++|...|++.... .|+...+..+...+...|++++|...++.+.+.. +.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 123555556666677777777777776664 3445666666677777777777777777766654 445666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
+...|...|++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 77777777777777777766542 245566667777777777777777777766543 22445666666667777777
Q ss_pred HHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHHHc----------CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 354 EEGKVYFDSMAKHG-----LKPELDHYSCVVDLLGRA----------GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 354 ~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
++|...++++.+.. .......+......+.+. |++++|...+++ +++.+|
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~---------------a~~~~p 459 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK---------------ACELDP 459 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH---------------HHHHCT
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH---------------HHHhCC
Confidence 77777777665421 111122233344555555 677777666654 456788
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.++.++..++.+|...|++++|.+.|++..+..
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888899999999999999999999999998865
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=5.5e-17 Score=154.64 Aligned_cols=288 Identities=11% Similarity=0.000 Sum_probs=239.3
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAI 207 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~l 207 (519)
.+.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++.++...|++++|..+++++. +.+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34566778888888889999999999999998875 4456677778889999999999999999876 3567789999
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 208 IAAFAQEW-QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 208 i~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
...+...| ++++|...|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998764 3456788899999999999999999999998875 4456777779999999999
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCCHHH
Q 044422 287 VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--------VKPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 287 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
+++|...++...+ .+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998765 366789999999999999999999999987631 13345788899999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH-hcc
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLY-AGV 434 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~ 434 (519)
|...+++..+.. +.+...+..+...|.+.|++++|.+.+++. ++++|.++.++..+..++ ...
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA---------------LGLRRDDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT---------------TTTCSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH---------------HccCCCchHHHHHHHHHHHHHh
Confidence 999999998754 346788899999999999999999999876 345566666777778777 455
Q ss_pred CCH
Q 044422 435 RCW 437 (519)
Q Consensus 435 g~~ 437 (519)
|+.
T Consensus 319 g~~ 321 (330)
T 3hym_B 319 GDS 321 (330)
T ss_dssp TC-
T ss_pred Cch
Confidence 554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=4.1e-16 Score=150.28 Aligned_cols=278 Identities=8% Similarity=-0.032 Sum_probs=233.5
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+..|+.+.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|++++|...|+
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 18 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999998864 3468889999999999999999999999999874 4467889999999999999999999999
Q ss_pred cCCC--C----ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 195 EMPV--R----NVVSWTAI------------IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 195 ~m~~--~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+... | +...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 8864 3 33444444 578999999999999999998764 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHH------------HHHHHHHHcCChHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWN------------SMIAGYAQHGLAVRA 321 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~------------~li~~~~~~g~~~~A 321 (519)
..++.+.+.. +.+..++..+...|...|++++|...|+...+ | +...+. .+...+.+.|++++|
T Consensus 175 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 175 SDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp HHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998875 66788999999999999999999999998764 3 333332 236678999999999
Q ss_pred HHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 322 IDLFEEMMKQRVKPDA----ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 322 ~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 254 TSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875422 22 234557788999999999999999999853 34788899999999999999999999886
Q ss_pred C
Q 044422 398 M 398 (519)
Q Consensus 398 ~ 398 (519)
.
T Consensus 332 a 332 (359)
T 3ieg_A 332 A 332 (359)
T ss_dssp H
T ss_pred H
Confidence 5
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.5e-16 Score=150.09 Aligned_cols=267 Identities=11% Similarity=0.021 Sum_probs=228.5
Q ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044422 166 FIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI 242 (519)
Q Consensus 166 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 242 (519)
.+.+...+..+...+...|++++|.++|+++. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 35566778888999999999999999999986 3456678888899999999999999999998864 3456788899
Q ss_pred HHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 044422 243 LSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLA 318 (519)
Q Consensus 243 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 318 (519)
...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999998875 55678899999999999999999999998764 3467788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHHcCCHHH
Q 044422 319 VRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG--------LKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998764 3467888999999999999999999999988631 13346788999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
|...+++. ++..|.++.++..+..+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQA---------------LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHH---------------HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHH---------------HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99988754 4567888899999999999999999999999987653
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1e-16 Score=155.49 Aligned_cols=290 Identities=10% Similarity=-0.042 Sum_probs=202.1
Q ss_pred CCChhhHHH-HHHHHHHhCC-CC--hHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHH
Q 044422 148 TRNIRGGAP-YQCLAIRTGF-IA--NVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 148 ~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a 220 (519)
.|+++.|.. .+....+..- .| +...+..+...+.+.|++++|...|+++. +.+..+|..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 456666666 5554432210 11 23456667777777788888877777764 34556777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH---------------HHHHHHhcC
Q 044422 221 LELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS---------------LISMYCKCG 285 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~~ 285 (519)
...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 88887776654 3456677777777888888888888887777654 212222211 233334889
Q ss_pred CHHHHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 286 NVEEAVYVFNNMHG--K---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 286 ~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
++++|...|+++.+ | +..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998763 3 46788999999999999999999999988753 335778999999999999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 361 DSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 361 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+++.+.. +.+...+..+...|.+.|++++|...++++- ..|+.... .-...|....+|..|..+|...|++++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP-----RGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc-----cccccchhhHHHHHHHHHHHHhCChHh
Confidence 9998753 3467889999999999999999999988661 11110000 001122336788889999999999999
Q ss_pred HHHHHHH
Q 044422 440 AARVRKL 446 (519)
Q Consensus 440 A~~~~~~ 446 (519)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998764
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=3.1e-16 Score=152.10 Aligned_cols=281 Identities=14% Similarity=0.039 Sum_probs=223.9
Q ss_pred CHHHHHH-HHHHHhHCC---CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 115 DVEKLIS-MHHDLHRER---LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~-~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
++++|++ .|++..+.. ...+...+..+...+.+.|+++.|...++.+.+.. +.+..++..+..++.+.|++++|.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 6777777 777655432 11135567788889999999999999999999874 557788999999999999999999
Q ss_pred HHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHccCCc
Q 044422 191 KVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS---------------ILSACTGSGAL 252 (519)
Q Consensus 191 ~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~---------------ll~~~~~~g~~ 252 (519)
..|+++. +.+..++..+..++...|++++|...|+++...... +...+.. .+..+...|++
T Consensus 119 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 9999875 457789999999999999999999999999886422 2222211 24444488999
Q ss_pred hHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFS-YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++|...++.+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998875221 588999999999999999999999998753 36789999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----------cCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 329 MKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK----------PELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 329 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+.. +.+..++..+..++.+.|++++|...++++.+..-. ....+|..+..+|...|+.++|..++++.
T Consensus 278 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 278 LELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8753 346778999999999999999999999998863211 12678999999999999999999988743
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=7.3e-15 Score=137.35 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=198.9
Q ss_pred HHHHHhCCCHHHHHHHHccCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPVRNV----VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL 252 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 252 (519)
|+-....|+++.|+..++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445568899999998887764332 3445677889999999998876644 2356777888888899999999
Q ss_pred hHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 044422 253 GQGRSAHCQTIRMGF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 331 (519)
++|.+.++.+...+. +.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999887764 44566777788899999999999999998 457788899999999999999999999999876
Q ss_pred CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH
Q 044422 332 RVKPDAITF---LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWE 408 (519)
Q Consensus 332 ~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 408 (519)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a---------- 226 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA---------- 226 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence 3 554321 12233344568999999999999876 3567888999999999999999999887754
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHhccCCHHH-HHHHHHHHHHCC
Q 044422 409 AAESRLLLEPECAATHVQLANLYAGVRCWDQ-AARVRKLMKDKG 451 (519)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~-A~~~~~~m~~~g 451 (519)
+.++|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 227 -----l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 227 -----LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -----HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -----HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 67788899999999999999999876 568888887754
No 19
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=172.73 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMH-------GKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 339 (519)
...-..+||+||++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456688888888888888888888887653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 044422 340 FLGVISSCRHGGL-VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDF 394 (519)
Q Consensus 340 ~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (519)
|++||.++++.|+ .+.|.++|++|.+.|+.||..+|++++.++.+.+-++.+.++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999987 578899999999999999999999998877765444433333
No 20
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.7e-18 Score=173.87 Aligned_cols=127 Identities=10% Similarity=0.035 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP-------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTF 239 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 239 (519)
..-..+||+||++||+.|++++|.++|++|. .||+.+||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997753 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCc-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 240 TSILSACTGSGAL-GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 240 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
++||.++|+.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999985 78999999999999999999999999877765433333333
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=6e-16 Score=148.43 Aligned_cols=332 Identities=13% Similarity=0.048 Sum_probs=160.8
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++++|.++++.+.. ..+|..+..++...+ ++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g-----------------------------------~~~eAI 52 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKG-----------------------------------MVKEAI 52 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcC-----------------------------------CHHHHH
Confidence 56778888888888842 247777777776665 889999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRN 200 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 200 (519)
+.|.+. +|..+|..++.++...|++++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+
T Consensus 53 dsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn 121 (449)
T 1b89_A 53 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPN 121 (449)
T ss_dssp ----------------------------------------------------------------CHHHHTTTTT---CC-
T ss_pred HHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCc
Confidence 999653 58889999999999999999999988766653 5567889999999999999999998886 477
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 889999999999999999999999977 37899999999999999999999887 378999999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
|+..|+++.|......+. ..+.-...++..|.+.|++++|..+++...... +-....|+-|-..+++- ++++..+-+
T Consensus 187 Cv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl 263 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 263 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 999999999988777655 344445578999999999999999999987554 34466777776666664 344444444
Q ss_pred HHHH-HcCCCc------CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC--------------CHHHHHHHHHhhhcCC
Q 044422 361 DSMA-KHGLKP------ELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYP--------------NAVIWEAAESRLLLEP 418 (519)
Q Consensus 361 ~~m~-~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p--------------~~~~~~~~~~~~~~~~ 418 (519)
+... +-+++| +...|..++..|...++++.|...+-+-+ .-- -..-|+++.-.+...
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~- 342 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK- 342 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC-
Confidence 3322 233444 45678899999999999999988765542 111 122233333333333
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
|...+.|+.++...=+...+.++|++
T Consensus 343 --p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 343 --PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp --GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33566677777666666666666543
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=3.7e-15 Score=152.25 Aligned_cols=316 Identities=10% Similarity=0.009 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
++++|+..|+++.+.. +.+...+..+..++.+.|+++.|...++.+.+.. +.+..++..+..++...|++++|...|+
T Consensus 40 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777777777653 3366677777777777777777777777777664 4456677777777777777777777775
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHH-----------------------------
Q 044422 195 EMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEPNDFTF----------------------------- 239 (519)
Q Consensus 195 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~----------------------------- 239 (519)
.+. .++...+..+..+...+....|...++++... ...|+....
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 118 VLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp HHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred HHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 332 22222223344444455556666666666432 112222221
Q ss_pred -HHHHHHHHc--------cCCchHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC
Q 044422 240 -TSILSACTG--------SGALGQGRSAHCQTIRMGFFSY-------IQVANSLISMYCKCGNVEEAVYVFNNMHG--KD 301 (519)
Q Consensus 240 -~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~ 301 (519)
..+...+.. .|++++|..+++.+.+.. +.+ ..++..+...+...|++++|...|+...+ |+
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 111111111 247788888888887754 222 33577777888999999999999998763 66
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 381 (519)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 353 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7788888899999999999999999988764 3367788889999999999999999999998754 3356788889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 382 LGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|...|++++|...++++ ++..|.++.++..++..|...|++++|...++++.+..
T Consensus 354 ~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNET---------------KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHTTCHHHHHHHHHHH---------------HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999999999988754 46678888899999999999999999999999987754
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=6.2e-16 Score=149.93 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
+...+..+...+.+.|+++.|...|+.+++.. +.+..++..+..+|.+.|++++|+..|++.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888889999999999999999999875 5578899999999999999999999999876 3567899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC--cHHHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPN-----------DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS--YIQVANSL 277 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 277 (519)
|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++.+.+.. +. +..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 999999999999999997743 32 2233455788999999999999999998875 33 68899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 354 (519)
...|.+.|++++|...|++..+ .+..+|+.+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998753 467899999999999999999999999998863 335788999999999999999
Q ss_pred HHHHHHHHHHHcC---CC--------cCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 355 EGKVYFDSMAKHG---LK--------PELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 355 ~a~~~~~~m~~~~---~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+|...|+++.+.. .. .+...|..+..++...|+.+.+....++-
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999988522 01 13678999999999999999999887753
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.1e-15 Score=148.28 Aligned_cols=270 Identities=10% Similarity=-0.063 Sum_probs=211.0
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 245 (519)
+...+..+...+.+.|++++|...|+++. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34558888999999999999999999886 4577899999999999999999999999998864 4467899999999
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCc----------HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSY----------IQVANSLISMYCKCGNVEEAVYVFNNMHG--K---DIVSWNSMIA 310 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~ 310 (519)
+...|++++|...++.+.+.. +.+ ..++..+...+.+.|++++|...|+++.+ | +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998753 111 23344568899999999999999998864 3 5789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
.+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+...+..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998863 3467899999999999999999999999999753 3357889999999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHH
Q 044422 391 ARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKL 446 (519)
Q Consensus 391 A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 446 (519)
|...++++ ...|+...... ......+...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQ----VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcc----cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999876 11111100000 000011356788899999999999998887664
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=1.5e-16 Score=152.67 Aligned_cols=284 Identities=12% Similarity=0.064 Sum_probs=134.5
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVF 193 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 193 (519)
++.++|.+.++++. ++.+|..+..++.+.|++++|.+.|.. .+|..+|..++..+...|++++|++++
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37899999999883 345899999999999999999999954 357779999999999999999999987
Q ss_pred ccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 194 EEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 194 ~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 85 ~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 85 QMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 76653 556789999999999999999998884 377789999999999999999999999876
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG 351 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (519)
..|..+++++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ .....-...++..|.+.|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 221 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCC
Confidence 478999999999999999999999983 8899999999999999999996654442 223333556888999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc--CCHHHHHHHHHh-CCCCCCHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 352 LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA--GLLEEARDFIKQ-MPIYPNAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
.+++|..+++...... +-...+|+-|.-+|++- ++..+..+.|.. +.+.|-. ++. .+...|..+.
T Consensus 222 ~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~---~~~--------~~~~~w~e~~ 289 (449)
T 1b89_A 222 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAA--------EQAHLWAELV 289 (449)
T ss_dssp CHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH---HHH--------HTTTCHHHHH
T ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH---HHH--------HHHHHHHHHH
Confidence 9999999999988644 45677788887777764 345555555442 2211100 000 3456778889
Q ss_pred HHHhccCCHHHHHHHH
Q 044422 429 NLYAGVRCWDQAARVR 444 (519)
Q Consensus 429 ~~~~~~g~~~~A~~~~ 444 (519)
-.|...++++.|..++
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 9999999999998753
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=4e-15 Score=141.46 Aligned_cols=261 Identities=11% Similarity=-0.027 Sum_probs=209.5
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
+...+......+...|++++|..+++.+.+.. +.+..++..+..++.+.|++++|...|+++. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33455667777888899999999998888764 4467788888888999999999999888775 3467788888889
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSI--------------LS-ACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
+...|++++|...++++..... .+...+..+ .. .+...|++++|...++.+.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 9999999999999988877532 122222222 22 3777889999999999998875 55788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
.+...|.+.|++++|...++++.+ .+..+|..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998753 357789999999999999999999999988753 3367788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCc-----------CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 353 VEEGKVYFDSMAKHGLKP-----------ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+++|...++++.+..-.. +...+..+..++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998643111 4678899999999999999999998865
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=8.2e-15 Score=137.02 Aligned_cols=246 Identities=10% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHH
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANV--YVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 220 (519)
+..-..|+++.|....+.... ..|+. ...-.+..+|...|+++.|+..++....|+..++..+...+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHH
Confidence 444567888888887765432 34443 35566778999999999999988876667777888899999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 221 LELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 221 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
++.++++...+..|+ ...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|.+.|+.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988765564 45566677889999999999999877 56788899999999999999999999998864
Q ss_pred --CChhHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHH
Q 044422 300 --KDIVSW---NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDH 374 (519)
Q Consensus 300 --~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 374 (519)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +-+..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 443211 12223344558999999999999887 45578889999999999999999999999988753 346778
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHhC
Q 044422 375 YSCVVDLLGRAGLLEE-ARDFIKQM 398 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~-A~~~~~~~ 398 (519)
+..++..+...|+.++ +.++++++
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8889999999999876 46666654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.8e-14 Score=142.40 Aligned_cols=343 Identities=12% Similarity=-0.013 Sum_probs=229.4
Q ss_pred CHHHHHHHHHHHhHC-----C---CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhC------CC-ChHHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRE-----R---LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG------FI-ANVYVGSSLITL 179 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~-~~~~~~~~li~~ 179 (519)
+.++|++.|++..+. + .+....+|+.+..+|...|++++|...++...+.. .. ....++..+..+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 888888888876431 1 22345689999999999999999999998886531 11 234566666666
Q ss_pred HHhC--CCHHHHHHHHccCC--CC-ChhHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 044422 180 YSKC--RVIIDAYKVFEEMP--VR-NVVSWTAIIAA---FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG--- 248 (519)
Q Consensus 180 ~~~~--g~~~~A~~~~~~m~--~~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--- 248 (519)
+.+. +++++|+..|++.. .| ++..+..+..+ +...++.++|++.+++..+.. +.+...+..+...+..
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC-
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHh
Confidence 6554 57999999999876 33 45555555444 455678889999998887754 3355666666555544
Q ss_pred -cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHc---------
Q 044422 249 -SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--K-DIVSWNSMIAGYAQH--------- 315 (519)
Q Consensus 249 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~--------- 315 (519)
.|+.++|.+.++...... +.+..++..+...|...|++++|...|++..+ | +..++..+..+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp -----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467889999999988875 66788899999999999999999999998764 3 455666665555322
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHH-HH
Q 044422 316 ----------GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD--HYSCVVD-LL 382 (519)
Q Consensus 316 ----------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~ 382 (519)
+..+.|...+++..+.. +.+..++..+...+...|++++|...|++..+....+... .+..+.. .+
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23567788888776653 2244567788889999999999999999998855333221 2233332 23
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHH--------HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 044422 383 GRAGLLEEARDFIKQM-PIYPNAVIW--------EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~-~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~ 453 (519)
...|++++|...|++. .+.|+...+ ..+++++..+|.++.+|..|+.+|...|++++|++.|++..+.|-.
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4679999999999876 556654333 3456778899999999999999999999999999999999988754
Q ss_pred CCCeeEE
Q 044422 454 TNPGCSW 460 (519)
Q Consensus 454 ~~~~~~~ 460 (519)
.+...+|
T Consensus 463 ~p~a~~~ 469 (472)
T 4g1t_A 463 IPSASSW 469 (472)
T ss_dssp -------
T ss_pred CCcHhhc
Confidence 4443444
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=3e-15 Score=142.28 Aligned_cols=260 Identities=9% Similarity=-0.039 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA 245 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 245 (519)
+...+-.+...+...|++++|..+|+++. +.+...|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 33456677888999999999999999885 3567789999999999999999999999998864 4467889999999
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSL--------------IS-MYCKCGNVEEAVYVFNNMHG---KDIVSWNS 307 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 307 (519)
+...|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999998764 2223333332 22 37778899999999998754 36788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCC
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (519)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998763 3367788999999999999999999999998753 3467889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC------------CchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 388 LEEARDFIKQMPIYPNAVIWEAAESRLLLEPE------------CAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 388 ~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~------------~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
+++|.+.++++ +...|. ++.++..+..+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRA---------------IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHH---------------HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHH---------------HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999998865 233344 4567888999999999999999998753
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=6.9e-12 Score=126.59 Aligned_cols=305 Identities=14% Similarity=0.046 Sum_probs=249.8
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCC
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGS----TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRV 185 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 185 (519)
.+.++|++.|++..+.| +...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 38999999999998876 66777777777777 789999999999998877 56677778888877 789
Q ss_pred HHHHHHHHccCC-CCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHH
Q 044422 186 IIDAYKVFEEMP-VRNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGR 256 (519)
Q Consensus 186 ~~~A~~~~~~m~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~ 256 (519)
+++|.+.|++.. ..+..++..+...|.. .++.++|...|++..+.| +...+..+...+.. .++.++|.
T Consensus 167 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 167 YVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998875 3577888888888888 899999999999998865 45667777777775 78999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQH-----GLAVRAIDLFE 326 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~ 326 (519)
..++...+.| +...+..+...|.. .++.++|...|+...+ .+...+..+...|... +++++|...|+
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9999988865 45567777777877 8999999999998765 4667788888888887 89999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCC
Q 044422 327 EMMKQRVKPDAITFLGVISSCRHGG---LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLEEARDFIKQMP 399 (519)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 399 (519)
+..+.| +...+..+...+...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++.-
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 998875 4456666777776656 7899999999998864 56788888888988 899999999998652
Q ss_pred CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC
Q 044422 400 IYPNAVIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 400 ~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g~~ 453 (519)
+ ..++.++..|...|.. .+++++|...|++..+.|..
T Consensus 395 ---------------~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 395 ---------------E--QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---------------h--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 1 1235567778999988 89999999999999988743
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=1.5e-12 Score=139.08 Aligned_cols=358 Identities=13% Similarity=0.128 Sum_probs=259.4
Q ss_pred hhccCccchhhHHhhhhhcCCC-CCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccC
Q 044422 37 KQISSSKSLHKALRVLDIISPR-TRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVD 115 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (519)
+.+...|.+.+|+++++.+.-. ..+.......+.++.+.++.+... ...+...+ + ......+-..+.. .+.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~R--v~eyI~kL---d-~~d~~eIA~Iai~--lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTR--VMEYINRL---D-NYDAPDIANIAIS--NEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhh--HHHHHHHh---h-hccHHHHHHHHHh--CCC
Confidence 4445889999999999998632 234466778888888887775321 11111111 1 1111222222333 348
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
+++|..+|++... .....+.++. ..+++++|.++.+.. -+..+|..+..++...|++++|++.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999631 2222333433 667899999888754 2467899999999999999999999976
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 196 MPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 196 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...|.
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 5 678888999999999999999999998877654 33333345999999999888655443 2 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 355 (519)
.+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 8999999999999999999975 58999999999999999999999886 256788888888999999888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHH-------------------HHHHHhh
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNA-VIW-------------------EAAESRL 414 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~-------------------~~~~~~~ 414 (519)
|...... +..+...+..++..|.+.|.+++|..+++.. +..|.- ..| .......
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 8876553 3445667778899999999999999999765 333221 122 1112222
Q ss_pred hcCC-----CCchhHHHHHHHHhccCCHHHHHHH
Q 044422 415 LLEP-----ECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 415 ~~~~-----~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
.+.| .+...|..+.-.|.+.|+++.|...
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2333 4456788899999999999999854
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=9.4e-12 Score=125.61 Aligned_cols=303 Identities=11% Similarity=0.041 Sum_probs=251.5
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCC
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAVTSCGS----TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRV 185 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 185 (519)
++.++|+..|+...+.| +...+..+-..|.. .+++++|...|....+.| +...+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 48999999999999875 66777788888887 899999999999998876 56677778888888 889
Q ss_pred HHHHHHHHccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHH
Q 044422 186 IIDAYKVFEEMPV-RNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGR 256 (519)
Q Consensus 186 ~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~ 256 (519)
+++|...|++..+ .++..+..+...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999998763 467788888888887 789999999999998875 56778888888887 89999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISMYCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEE 327 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 327 (519)
..++...+.| +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|...|++
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 9999998875 45677888888886 7899999999998765 466777888888888 8999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhCC
Q 044422 328 MMKQRVKPDAITFLGVISSCRHG-----GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG---LLEEARDFIKQMP 399 (519)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~ 399 (519)
..+.| +...+..+...+... ++.++|...+++..+.| +...+..+...|...| +.++|.+.|++.-
T Consensus 285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 98765 455666777777776 89999999999999875 4566777888888766 7888888888651
Q ss_pred CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 044422 400 IYPNAVIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 400 ~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g 451 (519)
+ ..++.++..|...|.. .+++++|...|++..+.|
T Consensus 359 ---------------~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 359 ---------------A--KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp ---------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ---------------H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1 1345677778999988 899999999999998876
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.2e-13 Score=124.54 Aligned_cols=223 Identities=13% Similarity=0.028 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC--CCc----HHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF--FSY----IQVAN 275 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 275 (519)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666666777777777777777766655 5566666777777777777777777766655321 111 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
.+...|.+.|++++|...|+...+ ++ ...+.+.|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 777777777777777777776553 33 234556677788888888777652 22345667777778888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
++|...+++..+.. +.+...+..+...|...|++++|...+++. ++..|.++.+|..+..+|..
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA---------------IEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------HHhCHHHHHHHHHHHHHHHH
Confidence 88888888887643 335677778888888888888888877654 44566777777778888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044422 434 VRCWDQAARVRKLMKDK 450 (519)
Q Consensus 434 ~g~~~~A~~~~~~m~~~ 450 (519)
.|++++|...+++..+.
T Consensus 220 ~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 220 VKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 88888888888877654
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=2.8e-13 Score=120.87 Aligned_cols=209 Identities=13% Similarity=0.018 Sum_probs=123.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44455555666666666666666666655543 2344555555556666666666666666555543 333444444444
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
++.+.+. . ... .+...|++++|...+++..+... -+...+..+..++...|++++|...
T Consensus 82 ~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 82 AYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHH
Confidence 4443300 0 000 01122788888888888776532 2456777777788888888888888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
|++..+.. .+...+..+..+|...|++++|...|++. ++++|.++.++..+..++...|++++
T Consensus 141 ~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 141 LKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA---------------LEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHccCHHH
Confidence 88888766 67777888888888888888888877643 56678888888888888888888888
Q ss_pred HHHHHHHHH
Q 044422 440 AARVRKLMK 448 (519)
Q Consensus 440 A~~~~~~m~ 448 (519)
|...+++..
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 888887653
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=3.5e-11 Score=122.68 Aligned_cols=353 Identities=7% Similarity=0.043 Sum_probs=241.7
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
..|++++|..+|+...+ ..+.+...|...+....+.+ ++++|.
T Consensus 24 ~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~-----------------------------------~~~~a~ 66 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAK-----------------------------------NYDKVE 66 (530)
T ss_dssp HSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTT-----------------------------------CHHHHH
T ss_pred HhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcC-----------------------------------CHHHHH
Confidence 46788888888888763 33455566666666665554 889999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHH-hcCCChhhHHH----HHHHHHHh-CCCC-hHHHHHHHHHHHHh---------CC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSC-GSTRNIRGGAP----YQCLAIRT-GFIA-NVYVGSSLITLYSK---------CR 184 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g 184 (519)
.+|++..+.. |+...|...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|
T Consensus 67 ~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 144 (530)
T 2ooe_A 67 KLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ 144 (530)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh
Confidence 9999998753 6777777666533 34577777665 66666543 5443 45677777776654 68
Q ss_pred CHHHHHHHHccCCC-CCh---hHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCC---
Q 044422 185 VIIDAYKVFEEMPV-RNV---VSWTAIIAAF-------------AQEWQVDMCLELYRMMR------NSM---LEPN--- 235 (519)
Q Consensus 185 ~~~~A~~~~~~m~~-~~~---~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~--- 235 (519)
+++.|..+|++... |.. ..|....... .+.+++..|..++.+.. +.. ++|+
T Consensus 145 ~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 145 RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 89999999988764 322 2333222210 12345677777766532 111 3444
Q ss_pred -----HHHHHHHHHHHHcc----CCc----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-------cCCHH-------
Q 044422 236 -----DFTFTSILSACTGS----GAL----GQGRSAHCQTIRMGFFSYIQVANSLISMYCK-------CGNVE------- 288 (519)
Q Consensus 236 -----~~t~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~------- 288 (519)
...|...+...... ++. +.+..+|+...... +.+..+|..+...+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444444333221 232 36677888887763 5567888888888775 68876
Q ss_pred HHHHHHHhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHH
Q 044422 289 EAVYVFNNMHG---K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 289 ~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (519)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+++.|..+|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999998764 3 5678888999999999999999999999884 454 24788888888889999999999999
Q ss_pred HHHcCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHH
Q 044422 363 MAKHGLKPELDHYSCVVDL-LGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAA 441 (519)
Q Consensus 363 m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~ 441 (519)
..+.. +.+...|...... +...|+.++|..+|+.. ++..|+++..+..++..+.+.|++++|.
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a---------------l~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG---------------LKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 88742 2233333322222 34688999999888754 4556777888888899999999999999
Q ss_pred HHHHHHHHCC
Q 044422 442 RVRKLMKDKG 451 (519)
Q Consensus 442 ~~~~~m~~~g 451 (519)
.+|++....+
T Consensus 446 ~~~~~al~~~ 455 (530)
T 2ooe_A 446 VLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcc
Confidence 9999988874
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.5e-12 Score=117.46 Aligned_cols=218 Identities=10% Similarity=-0.028 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--C----C----hhHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--R----N----VVSW 204 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----~----~~~~ 204 (519)
...+..+...+...|+++.|...++.+.+.. .+..++..+..++...|++++|...|++... | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566777778888888888888888888877 6777888888888888888888888887652 1 1 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
..+..++...|++++|...|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 78888888888888888888887764 3443 23455567777777777777653 34556677777777777
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFD 361 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (519)
|++++|...|++..+ .+..+|..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777776543 345667777777777777777777777776643 2245666667777777777777777777
Q ss_pred HHHH
Q 044422 362 SMAK 365 (519)
Q Consensus 362 ~m~~ 365 (519)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=4.6e-12 Score=116.94 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILSA 245 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~ 245 (519)
..+-.....+...|++++|+..|++.. +.+...|..+..++...|++++|+..+++....+..| ....|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344456667778888888888888764 2355578888888899999999999998887743222 23457888889
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAI 322 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (519)
+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888865 45678899999999999999999999998875 25567777773455566999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcC-CCcC------HHHHHHHHHHHHHcCCHHHHH
Q 044422 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHG-LKPE------LDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~ 392 (519)
..|++..+.. +.+...+..+..++...|+ .+.|...+++..+.. -.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998863 2246677777788888887 788888888887521 1233 257788999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHH
Q 044422 393 DFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLY 431 (519)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 431 (519)
+.+++. ++++|.++.++..+....
T Consensus 242 ~~~~~a---------------l~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNI---------------LALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHH---------------HHHCTTCHHHHHHHC---
T ss_pred HHHHHH---------------HhcCccHHHHHHHhhhhh
Confidence 988765 455666655555444433
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=2.2e-12 Score=114.99 Aligned_cols=196 Identities=14% Similarity=-0.029 Sum_probs=120.3
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
+++...+..+...+.+.|++++|...|++.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 5677889999999999999999999999875 3467789999999999999999999999998864 34567788888
Q ss_pred HHHHcc-----------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 044422 244 SACTGS-----------GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGY 312 (519)
Q Consensus 244 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 312 (519)
.++... |++++|...++...+.. +.+. ..|..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~-------------------------------~~~~~lg~~~ 128 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYA-------------------------------PLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCH-------------------------------HHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccH-------------------------------HHHHHHHHHH
Confidence 888777 55555555555555442 2233 4444444555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (519)
...|++++|...|++..+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 129 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------
T ss_pred HHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 55555555555555555443 344455555555555555555555555555432 223444555555555555555555
Q ss_pred HHHHhC
Q 044422 393 DFIKQM 398 (519)
Q Consensus 393 ~~~~~~ 398 (519)
..+++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555543
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.8e-12 Score=119.76 Aligned_cols=238 Identities=11% Similarity=-0.045 Sum_probs=171.7
Q ss_pred cCHHHHHHHHHHHhHCCC---CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHH
Q 044422 114 VDVEKLISMHHDLHRERL---KVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAY 190 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (519)
+++++|+..|+.+.+... +.+..++..+...+...|+++.|...++.+.+.. +.+..+|..+..+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 489999999999987642 1246678888889999999999999999998875 456788999999999999999999
Q ss_pred HHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC
Q 044422 191 KVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF 267 (519)
Q Consensus 191 ~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 267 (519)
..|++.. +.+..+|..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 9998876 346778889999999999999999999998874 3444444455556677788999999887776653
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKD-------IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITF 340 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 340 (519)
+++...+. ++..+...++.++|...+....+.+ ..+|..+...|.+.|++++|...|++..+.. |+. +
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~ 249 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--F 249 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--C
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--H
Confidence 33433333 6666777777888888888776532 3566667777777777777777777776542 321 1
Q ss_pred HHHHHHHHccCCHHHHHHHH
Q 044422 341 LGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~ 360 (519)
.....++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 12233445556666655544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=9.1e-13 Score=121.79 Aligned_cols=220 Identities=7% Similarity=-0.116 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
+|..+..++...|++++|...|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444444444555555555554444432 2234445555555555555555555555554432 233455555555555
Q ss_pred hcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044422 283 KCGNVEEAVYVFNNMHG--KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYF 360 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (519)
+.|++++|...|+.+.+ |+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHH
Confidence 55555555555555432 322233333334455677777777776665542 22333333 555666667777777777
Q ss_pred HHHHHcCCC--c-CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 361 DSMAKHGLK--P-ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 361 ~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
+...+.... | +...+..+...|.+.|++++|...+++. +..+|.+... ...++...|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~---~~~~~~~l~~~ 262 (275)
T 1xnf_A 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA---------------VANNVHNFVE---HRYALLELSLL 262 (275)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCCTTCHH---HHHHHHHHHHH
T ss_pred HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HhCCchhHHH---HHHHHHHHHHH
Confidence 776542211 1 1466777788888888888888877755 2233333222 25566677777
Q ss_pred HHHHHHH
Q 044422 438 DQAARVR 444 (519)
Q Consensus 438 ~~A~~~~ 444 (519)
++|++.+
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 7777665
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.2e-11 Score=112.82 Aligned_cols=201 Identities=11% Similarity=-0.008 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555566666666666666666655432 2244555555555555666666665555555443 2234444444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP-DAITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
+...|++++|.++++++.+.+..| +...+..+...+...|++++|...
T Consensus 115 -------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 -------------------------------LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------------------HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555555554444422222 233444444455555555555555
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 360 FDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+++..+.. +.+...+..+...|...|++++|...++++ ++..|.+...+..+...+...|++++
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF---------------AQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 55555432 223445555555555555555555555433 22333444444455555566666666
Q ss_pred HHHHHHHHHHC
Q 044422 440 AARVRKLMKDK 450 (519)
Q Consensus 440 A~~~~~~m~~~ 450 (519)
|.+.++++.+.
T Consensus 228 A~~~~~~~~~~ 238 (252)
T 2ho1_A 228 AASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.7e-11 Score=111.66 Aligned_cols=194 Identities=9% Similarity=-0.052 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAF 211 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 211 (519)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|.+.|++.. +.+...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4566777777788888888888888887764 4456677777777777888888777777664 23556677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 290 (519)
...|++++|...|+++...+..| +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776533334 34556666666667777777777776666553 33445555555555555555555
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 291 VYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
...++.+.+ .+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555432 2334444555555555555555555555544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1e-10 Score=108.02 Aligned_cols=223 Identities=12% Similarity=0.017 Sum_probs=158.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44566666677777777777777777776622 34556666667777 777777777777777665 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 276 SLISMYCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 276 ~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
.+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 7777777777776543 356677777777777 788888888888887765 45566666667
Q ss_pred HHc----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 347 CRH----GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 347 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++.- +..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~---------------~~~- 216 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC---------------ELE- 216 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH---------------HTT-
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH---------------hCC-
Confidence 776 788888888888887754 45667777888888 888888888887651 111
Q ss_pred CCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 044422 419 ECAATHVQLANLYAG----VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g 451 (519)
++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 13455667888887 888888888888887766
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=4.3e-11 Score=106.65 Aligned_cols=197 Identities=11% Similarity=0.032 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
..++..+...+...|++++|...|++.. +.+...|..+..++...|++++|...+++..... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3445555555555555555555555443 2234445555555555555555555555554432 22344444455555
Q ss_pred Hcc-CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 247 TGS-GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 247 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
... |++++|...++.+.+.+..|+ +...+..+...+...|++++|...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPT------------------------------PYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSC------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcc------------------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555 555555555554444211111 1234444444555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+++.+.. +.+...+..+...+...|++++|...++++.+..-..+...+..+...+...|+.++|..+++.+
T Consensus 137 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 137 KRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5544432 11344444555555555555555555555544321123444444444555555555555554443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=2.4e-11 Score=108.35 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=153.1
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHH
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIA 209 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 209 (519)
.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...|++.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 356778888999999999999999999998875 4567889999999999999999999999875 356778999999
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 210 AFAQE-WQVDMCLELYRMMRNSMLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 210 ~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999988433443 5678888999999999999999999888764 34466666677777777777
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 288 EEAVYVFNNMHG----KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 288 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
++|...++.+.+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777766665432 3444555555555666666666666666554
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=4.1e-12 Score=115.01 Aligned_cols=194 Identities=8% Similarity=0.027 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3344555555555555666655555555432 2344555555555566666666666665555543 3345555566666
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044422 281 YCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGK 357 (519)
Q Consensus 281 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 357 (519)
|...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655432 345556666666666777777777766665542 224556666666677777777777
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 358 VYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..++++.+.. +.+..++..+...|...|++++|.+.++++
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777766542 234556666777777777777777666644
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=1.5e-10 Score=106.96 Aligned_cols=221 Identities=10% Similarity=-0.018 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCCHHHHHHHHccCCC-CChhHHHHHH
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRVIIDAYKVFEEMPV-RNVVSWTAII 208 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 208 (519)
++.++..+...+...|++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555556666666667777777776666632 34455556666666 6666666666665542 3455566666
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044422 209 AAFAQ----EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG----SGALGQGRSAHCQTIRMGFFSYIQVANSLISM 280 (519)
Q Consensus 209 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (519)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666 666666666666665543 44555556666665 666666666666665544 33444455555
Q ss_pred HHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 044422 281 YCK----CGNVEEAVYVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRH-- 349 (519)
Q Consensus 281 ~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-- 349 (519)
|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+. ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 555 5555555555554432 233444455555555 5555555555555554421 3334444444444
Q ss_pred --cCCHHHHHHHHHHHHHc
Q 044422 350 --GGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 350 --~g~~~~a~~~~~~m~~~ 366 (519)
.+++++|...+++..+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHc
Confidence 45555555555555443
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.42 E-value=1.4e-09 Score=116.73 Aligned_cols=315 Identities=13% Similarity=0.059 Sum_probs=213.6
Q ss_pred hhccCccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCH
Q 044422 37 KQISSSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDV 116 (519)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (519)
..+...|.+++|..+|+... ......+.++... +..+.+..+...+.. +..| ..+-..... .+.+
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie~i----~nldrAiE~Aervn~--p~vW-sqLAKAql~--~G~~ 1121 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD------VNTSAVQVLIEHI----GNLDRAYEFAERCNE--PAVW-SQLAKAQLQ--KGMV 1121 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHHHH----hhHHHHHHHHHhcCC--HHHH-HHHHHHHHh--CCCH
Confidence 34457899999999999863 2233334445444 223334444433321 1111 122222222 3488
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccC
Q 044422 117 EKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEM 196 (519)
Q Consensus 117 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 196 (519)
++|++.|.+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 8888888664 377788888888888888888888887766543 44444455888888888888655443
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH
Q 044422 197 PVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS 276 (519)
Q Consensus 197 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (519)
..++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+... .+..+|..
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 3556677777888888888899998888774 37888888888888888888888765 45678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CCHH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG--GLVE 354 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--g~~~ 354 (519)
+-.+|...|++..|...... ..-++..+..++..|.+.|.+++|+.+++...... +-....|+-+...+++. +++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888888888888887765 33355667788999999999999999998776433 22334555555555553 3344
Q ss_pred HHHHHHHHHHHcCCCc------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKP------ELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
++.+.|..- -+++| +...|..++..|.+.|+++.|...+-
T Consensus 1334 Ehlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1334 EHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 444444322 22333 56779999999999999999985443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=8.8e-12 Score=112.76 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 044422 234 PNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIA 310 (519)
Q Consensus 234 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 310 (519)
....+|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+.+.+ .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345677888889999999999999999998864 55788999999999999999999999998753 46788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998864 3467788889999999999999999999998753 3467888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|.+.++++ +...|.++.++..++.+|...|++++|...+++..+..
T Consensus 178 A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAV---------------TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHH---------------HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99988755 45567777888889999999999999999999998754
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.7e-10 Score=114.10 Aligned_cols=304 Identities=11% Similarity=-0.028 Sum_probs=212.7
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT--------GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP----- 197 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 197 (519)
.......|+.+...+...|+.++|.+.|+..++. ..+....+|+.+..+|...|++++|...+++..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678999999999999999999999987653 122345689999999999999999999887653
Q ss_pred --C----CChhHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCchHHHHHHHHHHHcC
Q 044422 198 --V----RNVVSWTAIIAAFAQE--WQVDMCLELYRMMRNSMLEPNDFTFTSILSA---CTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 198 --~----~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~~ 266 (519)
. ....+|+.+..++... +++++|+..|++..+.. +-+...+..+..+ +...++.++|.+.++...+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1345666666666554 46999999999988753 2234444444444 445678889999998888765
Q ss_pred CCCcHHHHHHHHHHHHhc----CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 044422 267 FFSYIQVANSLISMYCKC----GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT 339 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 339 (519)
+.+..++..+...+... +++++|.+.+++... .+..++..+...|...|++++|...+++..+... -+..+
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 45566666666555544 567889999987643 4667889999999999999999999999987532 24555
Q ss_pred HHHHHHHHHcc-------------------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 044422 340 FLGVISSCRHG-------------------GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-P 399 (519)
Q Consensus 340 ~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 399 (519)
+..+..+|... +..+.|...++...+.. +.+...+..+...|...|++++|.+.|++. .
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 65555444321 23566777777777643 334556788999999999999999999875 3
Q ss_pred CCCCHHHHHHHHHhhhcCCCCchhHHHHHH-HHhccCCHHHHHHHHHHHHHCC
Q 044422 400 IYPNAVIWEAAESRLLLEPECAATHVQLAN-LYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 400 ~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..|+...... .+..+.. .+...|++++|+..|++..+..
T Consensus 363 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 363 KELTPVAKQL-------------LHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp SCCCHHHHHH-------------HHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred cCCCChHHHH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3333322211 2223333 3457899999999999887643
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=3.8e-11 Score=116.05 Aligned_cols=243 Identities=9% Similarity=-0.006 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-HHHHHHHHccCC---CCChhHHHHHHHH
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV-IIDAYKVFEEMP---VRNVVSWTAIIAA 210 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~~ 210 (519)
...|..+...+...|++++|...++.+++.. +-+..+|+.+..++...|+ +++|+..|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567777778888999999999999999875 4467789999999999996 999999999886 3567889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHH
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK-CGNVEE 289 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~ 289 (519)
+...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...++.+.+.. +.+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998864 3467889999999999999999999999999876 5678889999999988 566466
Q ss_pred H-----HHHHHhcCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--------
Q 044422 290 A-----VYVFNNMHG---KDIVSWNSMIAGYAQHG--LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG-------- 351 (519)
Q Consensus 290 a-----~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-------- 351 (519)
| +..|++..+ .+...|+.+...+...| ++++|.+.+.++ +. -+.+...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 466666543 36678888888888877 688898888887 32 3335667778888887764
Q ss_pred -CHHHHHHHHHHH-HHcCCCcC-HHHHHHHHHHHHH
Q 044422 352 -LVEEGKVYFDSM-AKHGLKPE-LDHYSCVVDLLGR 384 (519)
Q Consensus 352 -~~~~a~~~~~~m-~~~~~~p~-~~~~~~li~~~~~ 384 (519)
..++|..+++++ .+ +.|. ...|..+...+..
T Consensus 332 ~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258899999988 55 3353 4456655555543
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=1.6e-11 Score=113.28 Aligned_cols=227 Identities=9% Similarity=-0.077 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--CCh----hHHHHHHH
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--RNV----VSWTAIIA 209 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~ 209 (519)
..+......+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|+..|++... ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 334455566667777777777777777653 33445677777777777777777777776543 222 23677777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHH-HHHHhcCCHH
Q 044422 210 AFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI-SMYCKCGNVE 288 (519)
Q Consensus 210 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~ 288 (519)
++...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 7777788888888777776643 2345677777777777888888877777776653 44556666666 4443 44788
Q ss_pred HHHHHHHhcCC--C-ChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHH
Q 044422 289 EAVYVFNNMHG--K-DIVSWNSMIAGYAQHGL---AVRAIDLFEEMMKQR-VKPD------AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 289 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~ll~~~~~~g~~~~ 355 (519)
+|...|+...+ | +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88887776653 2 45666667777777777 777777777766531 1223 2466677777888888888
Q ss_pred HHHHHHHHHHc
Q 044422 356 GKVYFDSMAKH 366 (519)
Q Consensus 356 a~~~~~~m~~~ 366 (519)
|...+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888874
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=2.1e-11 Score=117.92 Aligned_cols=224 Identities=9% Similarity=0.003 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQ-VDMCLELYRMMRNSMLEPNDFTFTSILSA 245 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 245 (519)
...|..+...+.+.|++++|+..|++.. ..+..+|+.+..++...|+ +++|+..|++..... +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4578888889999999999999999886 3567889999999999997 999999999998864 3467889999999
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH-cCChHHH
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQ-HGLAVRA 321 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~A 321 (519)
+...|++++|...++.+.+.. +-+...|..+..++.+.|++++|+..|+++.+ .+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999999986 66789999999999999999999999998874 367899999999999 6665777
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC--------
Q 044422 322 -----IDLFEEMMKQRVKPDAITFLGVISSCRHGG--LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG-------- 386 (519)
Q Consensus 322 -----~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------- 386 (519)
+..+++..+... -+...|..+...+...| ++++|...+.++ +. -+.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 588888877532 25678888888888888 689999999887 32 3446778888999998874
Q ss_pred -CHHHHHHHHHhC
Q 044422 387 -LLEEARDFIKQM 398 (519)
Q Consensus 387 -~~~~A~~~~~~~ 398 (519)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 258888888766
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.3e-11 Score=120.93 Aligned_cols=296 Identities=11% Similarity=-0.001 Sum_probs=213.3
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHccCCC---------C
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN----VYVGSSLITLYSKCRVIIDAYKVFEEMPV---------R 199 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~ 199 (519)
.....+......+...|+++.|...++.+.+.+ +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455566677777888999999999999988874 222 35788888899999999999988877541 1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC--------------------chH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGA--------------------LGQ 254 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~--------------------~~~ 254 (519)
...++..+...+...|++++|...+++.... +-.+ ...++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457788888999999999999998877542 1111 13477888888889999 888
Q ss_pred HHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHH
Q 044422 255 GRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 255 a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~ 320 (519)
|...++...+. +.. ....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888776542 211 2245788889999999999999999987653 22 2378888999999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHHcCCHHH
Q 044422 321 AIDLFEEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLKP-ELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 321 A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~ 390 (519)
|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998765311 111 457788888999999999999999988742 2111 15577889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHH
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWD 438 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~ 438 (519)
|.+.+++.- . +.+.....+....++..+...+...|+..
T Consensus 326 A~~~~~~al--------~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHL--------E-ISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHH--------H-HHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH--------H-HHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999988751 0 00000001112335566777777776653
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=6.9e-10 Score=113.09 Aligned_cols=359 Identities=8% Similarity=-0.011 Sum_probs=230.9
Q ss_pred CccchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHH
Q 044422 41 SSKSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLI 120 (519)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (519)
+.|++++|..+|+...... |+...|...+.-.....+.... ..+.+.
T Consensus 58 ~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~------------------------------a~~~~~ 104 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPS------------------------------YKEKMA 104 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTT------------------------------HHHHHH
T ss_pred hcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhh------------------------------HHHHHH
Confidence 5689999999999987433 2344555544433221111110 112233
Q ss_pred HHHHHHhH-CCCCC-CHHHHHHHHHHHhc---------CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHH---------
Q 044422 121 SMHHDLHR-ERLKV-DASFLSTAVTSCGS---------TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLY--------- 180 (519)
Q Consensus 121 ~~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--------- 180 (519)
.+|+.... .|..| +...|...+....+ .|+++.|..+|+..++....+....|.......
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 45555433 23332 34455555544332 567777777777776622111123333222211
Q ss_pred ----HhCCCHHHHHHHHcc-------CC------CCC--------hhHHHHHHHHHHhc----CCh----HHHHHHHHHH
Q 044422 181 ----SKCRVIIDAYKVFEE-------MP------VRN--------VVSWTAIIAAFAQE----WQV----DMCLELYRMM 227 (519)
Q Consensus 181 ----~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~m 227 (519)
.+.++++.|..++.. +. .|+ ...|...+...... ++. +++..+|++.
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 123456667665543 11 222 24555555433322 232 4778889888
Q ss_pred HHCCCCCCHHHHHHHHHHHHc-------cCCch-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 044422 228 RNSMLEPNDFTFTSILSACTG-------SGALG-------QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYV 293 (519)
Q Consensus 228 ~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 293 (519)
.... +-+...|......+.+ .|+++ +|..+++...+.-.+.+...+..++..+.+.|++++|..+
T Consensus 265 l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7753 3466777777777765 79987 8999999988633355788999999999999999999999
Q ss_pred HHhcCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHcCC
Q 044422 294 FNNMHG--K-DI-VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS-CRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 294 ~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
|+++.+ | +. ..|...+..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+..
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 998764 3 33 478888988999999999999999998753 2233333322222 346899999999999988743
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc----hhHHHHHHHHhccCCHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA----ATHVQLANLYAGVRCWDQAARVR 444 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~L~~~~~~~g~~~~A~~~~ 444 (519)
+-+...|..++..+.+.|+.++|..+|++. +...|.++ ..|...+......|+.+.+.+++
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a---------------l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERV---------------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH---------------HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH---------------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 336788999999999999999999999875 22222222 25555688888899999999999
Q ss_pred HHHHHC
Q 044422 445 KLMKDK 450 (519)
Q Consensus 445 ~~m~~~ 450 (519)
+++.+.
T Consensus 487 ~r~~~~ 492 (530)
T 2ooe_A 487 KRRFTA 492 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=5.8e-12 Score=123.86 Aligned_cols=272 Identities=13% Similarity=0.017 Sum_probs=161.2
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChH----HHHHHHHHHHHhCCCHHHHHHHHccCCC---------CChhH
Q 044422 137 FLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANV----YVGSSLITLYSKCRVIIDAYKVFEEMPV---------RNVVS 203 (519)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~ 203 (519)
.+..+...+...|+++.|...++.+++.+- .+. .++..+...|...|++++|...|++... ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344445555666667777766666666531 121 3455556666666666666665554421 11234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMG-FFSYIQVANSLISMYC 282 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~ 282 (519)
+..+...|...|++++|...+++..... ...+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443210 0001 0112334444555555
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 044422 283 KCGN-----------------VEEAVYVFNNMHG-------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KP 335 (519)
Q Consensus 283 ~~~~-----------------~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p 335 (519)
..|+ +++|.+.+++..+ + ...++..+...+...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555444321 1 224667777778888888888888877655311 11
Q ss_pred C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHH
Q 044422 336 D----AITFLGVISSCRHGGLVEEGKVYFDSMAKHG----LK-PELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAV 405 (519)
Q Consensus 336 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 405 (519)
+ ..++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|...+++.- +.++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-- 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Confidence 2 2367778888999999999999998877421 11 124677888999999999999999998761 0000
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 406 IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
....+....++..+..+|...|++++|...+++..+.
T Consensus 336 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 --------LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp --------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0001112347778999999999999999999997654
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=2.7e-11 Score=119.03 Aligned_cols=258 Identities=9% Similarity=-0.017 Sum_probs=163.3
Q ss_pred ccCHHHHHHHHHHHhHCCCCCCH----HHHHHHHHHHhcCCChhhHHHHHHHHHHh----CC-CChHHHHHHHHHHHHhC
Q 044422 113 VVDVEKLISMHHDLHRERLKVDA----SFLSTAVTSCGSTRNIRGGAPYQCLAIRT----GF-IANVYVGSSLITLYSKC 183 (519)
Q Consensus 113 ~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~ 183 (519)
.+++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. +- +....++..+...|...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 34999999999999886422 33 46888888899999999999999988764 21 23456788999999999
Q ss_pred CCHHHHHHHHccCCC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC----CCC
Q 044422 184 RVIIDAYKVFEEMPV---------RNVVSWTAIIAAFAQEWQ-----------------VDMCLELYRMMRNS----MLE 233 (519)
Q Consensus 184 g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~ 233 (519)
|++++|...|++... ....++..+...|...|+ +++|+..+++.... +-.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999987642 123466677777777777 66666666554321 111
Q ss_pred C-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 044422 234 P-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAG 311 (519)
Q Consensus 234 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 311 (519)
+ ...++..+...+...|++++|...++...+..-. .+.. ....++..+...
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~la~~ 272 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------AERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------------------------HHHHHHHHHHHH
Confidence 1 1123444444445555555555444444332100 0000 001255566666
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRV--K---PDAITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLK-PELDHYSCVVDL 381 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~--~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~ 381 (519)
|...|++++|...+++..+... . ....++..+...+...|++++|...+++..+. +.. ....++..+...
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 6666777777666665544210 0 11345666777777788888888887776642 111 123466778888
Q ss_pred HHHcCCHHHHHHHHHhC
Q 044422 382 LGRAGLLEEARDFIKQM 398 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~~~ 398 (519)
|...|++++|.+.+++.
T Consensus 353 ~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH
Confidence 88888888888888765
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=8.3e-11 Score=114.55 Aligned_cols=228 Identities=9% Similarity=0.050 Sum_probs=168.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc--CC----CCcHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRM--GF----FSYIQVAN 275 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 275 (519)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+....+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677788888888888887653 1112 2356777888888888888888888777653 11 11245778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RV-KPDAITFL 341 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~ 341 (519)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999888887653 11 247888889999999999999999988762 23 33466788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKH----GLKPELDHYSCVVDLLGRAGL---LEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~---------- 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL---------- 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHH----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHH----------
Confidence 8888999999999999999988742 212223345667788888888 88999999888533222
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..++..|...|...|++++|...+++..+.
T Consensus 339 ------~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 339 ------EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 235556899999999999999999987654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=4.1e-11 Score=113.71 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=188.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHccCCC---------CChhHH
Q 044422 138 LSTAVTSCGSTRNIRGGAPYQCLAIRTGFIAN----VYVGSSLITLYSKCRVIIDAYKVFEEMPV---------RNVVSW 204 (519)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~ 204 (519)
+......+...|+++.|...++.+.+.. +.+ ..++..+...+...|++++|...+++... ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4445556677888888888888888764 222 35677888888888888888888877541 124567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC--------------------chHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFTFTSILSACTGSGA--------------------LGQGRSAH 259 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~--------------------~~~a~~~~ 259 (519)
..+...+...|++++|...+++.... +-.+ ...++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 77888888888988888888776542 1111 13467778888888888 88888877
Q ss_pred HHHHHc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHH
Q 044422 260 CQTIRM----GF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 260 ~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
+...+. +. +....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765532 21 12245778888889999999999998887653 12 237788888999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 326 EEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLK-PELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 326 ~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
++..+... ..+ ..++..+...+...|++++|...+++..+. +-. ....++..+...|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 88765311 111 456777888899999999999999988642 111 12446778899999999999999998
Q ss_pred HhC
Q 044422 396 KQM 398 (519)
Q Consensus 396 ~~~ 398 (519)
++.
T Consensus 327 ~~a 329 (338)
T 3ro2_A 327 EKH 329 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=4.9e-11 Score=113.14 Aligned_cols=271 Identities=11% Similarity=-0.012 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCC--CC-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMP--VR-N----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEP-NDFT 238 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t 238 (519)
..+......+...|++++|...|++.. .| + ...|..+...+...|++++|...+++.... +-.| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345556778889999999999999875 23 3 357888999999999999999999887542 2222 2457
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGN--------------------VEEAVYV 293 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~ 293 (519)
+..+...+...|++++|...++...+. +-. ....++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788889999999999999999887653 111 114488889999999999 9999988
Q ss_pred HHhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHH
Q 044422 294 FNNMHG-----K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVY 359 (519)
Q Consensus 294 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~ 359 (519)
+++..+ + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 877542 1 234778888999999999999999998765311 112 33678888889999999999999
Q ss_pred HHHHHHc----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 360 FDSMAKH----GLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQMP-IYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 360 ~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
+++..+. +..+ ...++..+...|...|++++|...+++.- ..++ ..-.+....++..+...|..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----------LKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHH
Confidence 9988742 1111 15567888999999999999999998761 0000 00001113467779999999
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 044422 434 VRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 434 ~g~~~~A~~~~~~m~~~g 451 (519)
.|++++|...+++..+..
T Consensus 316 ~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHC-
T ss_pred cCChHHHHHHHHHHHHHH
Confidence 999999999999987653
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=2.4e-10 Score=107.72 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ-VANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
++|..+|++....-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4445555444432001123344444444444555555555555444421 11122 445555555555555555555554
Q ss_pred cCCC---ChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCc-
Q 044422 297 MHGK---DIVSWNSMIAGYA-QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG-LKP- 370 (519)
Q Consensus 297 ~~~~---~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p- 370 (519)
..+. +...|........ ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 4331 1222222211111 1456666666666555432 1234555555555566666666666666665542 333
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 371 -ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 371 -~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
....|..++..+.+.|+.++|..+++++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2445555566666666666666655544
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=3.8e-11 Score=117.53 Aligned_cols=271 Identities=11% Similarity=-0.010 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHccCC--CC-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 044422 167 IANVYVGSSLITLYSKCRVIIDAYKVFEEMP--VR-N----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS----MLEPN 235 (519)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~ 235 (519)
......+......+...|++++|...|++.. .| + ...|..+...+...|++++|...+++.... +-.|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455567778888999999999999999875 23 3 357888999999999999999999886542 22222
Q ss_pred -HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCC--------------------HHH
Q 044422 236 -DFTFTSILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGN--------------------VEE 289 (519)
Q Consensus 236 -~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~--------------------~~~ 289 (519)
..++..+...+...|++++|...++...+. +-. ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 457788889999999999999999887653 111 124588899999999999 999
Q ss_pred HHHHHHhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCCHHH
Q 044422 290 AVYVFNNMHG-----K----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPD----AITFLGVISSCRHGGLVEE 355 (519)
Q Consensus 290 a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~ 355 (519)
|...++...+ . ...++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9988876542 1 23578888899999999999999999876531 1122 3377888889999999999
Q ss_pred HHHHHHHHHHc----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C---CCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 356 GKVYFDSMAKH----GLKP-ELDHYSCVVDLLGRAGLLEEARDFIKQMP-I---YPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 356 a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
|...+++..+. +..+ ...++..+...|...|++++|...+++.- + .++. +....++..
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~ 312 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR-------------IGEGRACWS 312 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc-------------HHHHHHHHH
Confidence 99999988742 2111 15577889999999999999999998751 0 0111 111346777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+...|...|++++|...+++..+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999986543
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=4.4e-11 Score=119.84 Aligned_cols=210 Identities=12% Similarity=0.053 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044422 217 VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL-GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFN 295 (519)
Q Consensus 217 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 295 (519)
+++++..+++..... +.+...+..+...+...|++ ++|...++...+.. +.+...|..+..+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544332 23556666666777777777 77777777666654 3446667777777777777777777777
Q ss_pred hcCC--CChhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CCHHHH
Q 044422 296 NMHG--KDIVSWNSMIAGYAQH---------GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG--------GLVEEG 356 (519)
Q Consensus 296 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------g~~~~a 356 (519)
+..+ |+...+..+...+... |++++|...+++..+.. +-+...|..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6543 4556666666667776 77777777777776653 22456677777777776 777888
Q ss_pred HHHHHHHHHcCCC---cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 357 KVYFDSMAKHGLK---PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 357 ~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
...|++..+.. + -+...|..+..+|...|++++|.+.|++. ++++|.++.++..+..++..
T Consensus 241 ~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 241 LSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQA---------------AALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHH
Confidence 88877777642 1 26667777777788888888877766543 45666777777777777777
Q ss_pred cCCHHHHHHHHH
Q 044422 434 VRCWDQAARVRK 445 (519)
Q Consensus 434 ~g~~~~A~~~~~ 445 (519)
.|++++|++.++
T Consensus 305 lg~~~eAi~~~~ 316 (474)
T 4abn_A 305 LSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 777777776543
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=2.1e-10 Score=98.98 Aligned_cols=164 Identities=12% Similarity=0.088 Sum_probs=131.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|...+........ -+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 566778888888888888888888887653 3567788888888888999999888888876533 255667777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+...++++.+...+.+..+.. +-+...+..+...|.+.|++++|.+.|++. ++++|.++.+|..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT---------------ISIKPGFIRAYQS 146 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH---------------HHhcchhhhHHHH
Confidence 888899999999998888753 345777888889999999999999877643 5678888888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 044422 427 LANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++.+|.+.|++++|++.|++..+.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999999999999988764
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=4.2e-11 Score=112.56 Aligned_cols=234 Identities=11% Similarity=0.091 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc------C-C
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNS-------MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM------G-F 267 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~ 267 (519)
.++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...++...+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555556666655555555441 11222344555555666666666666666555443 1 1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 044422 268 FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----------K-DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----- 331 (519)
Q Consensus 268 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 331 (519)
+....++..+...|...|++++|...|++..+ + ....+..+...+...|++++|..+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22344556666666666666666666655432 1 2345666777777777777777777776653
Q ss_pred -CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCcCHHH-------HHHHHHHHHHcCCHHHHHHHH
Q 044422 332 -RVKPD-AITFLGVISSCRHGGLVEEGKVYFDSMAKH-------GLKPELDH-------YSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 332 -~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~-------~~~li~~~~~~g~~~~A~~~~ 395 (519)
+..|+ ..++..+...+...|++++|...++++.+. ...+.... +..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 11222 345667777788888888888888877642 11111111 111122222223333333333
Q ss_pred HhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 396 KQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 396 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.. ....|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 268 ~~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KAC---------------KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhc---------------CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 332 2334555667888999999999999999999987653
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.2e-09 Score=94.18 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
..|..+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344445555555555555555555544432 1233444444555555555555555554444432 22334444444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 282 CKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 282 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
...++++.|...+....+ .+...+..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 445555555544443321 233444445555555555555555555554432 1234445555555555555555555
Q ss_pred HHHHHHH
Q 044422 359 YFDSMAK 365 (519)
Q Consensus 359 ~~~~m~~ 365 (519)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=5.1e-11 Score=111.94 Aligned_cols=166 Identities=12% Similarity=0.103 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh-------CCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC-------
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT-------GFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV------- 198 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 198 (519)
.+..++..+...+...|+++.|..+++.+.+. ..+....++..+...|...|++++|...+++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35567788888888999999999999888774 2233456788888888888888888888876641
Q ss_pred ----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHc--
Q 044422 199 ----RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRM-- 265 (519)
Q Consensus 199 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 265 (519)
....++..+...|...|++++|...|++..+. +-.| ....+..+...+...|++++|...++.+.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12346677777788888888888888777543 2222 3345666777777777777777777776654
Q ss_pred ----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 266 ----GF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 266 ----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+. +....++..+...|...|++++|...++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 2223456666666666666666666666544
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=4.8e-09 Score=98.69 Aligned_cols=211 Identities=9% Similarity=-0.049 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHHHHHHH-------hCCCH-------HHHHHHHccCCC---C-ChhHHHHHHHHHHh
Q 044422 152 RGGAPYQCLAIRTGFIANVYVGSSLITLYS-------KCRVI-------IDAYKVFEEMPV---R-NVVSWTAIIAAFAQ 213 (519)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~ 213 (519)
++|..+|+.+++.. +-+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 446667777766665 35775 788888877542 3 45578888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hcCCHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPN-DF-TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC-KCGNVEEA 290 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 290 (519)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 443 33 78888888888888888888888888764 344555554433322 36899999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 291 VYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKP--DAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
..+|+...+ .+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999987754 366788888899999999999999999998863 455 35678888888888999999999999988
Q ss_pred Hc
Q 044422 365 KH 366 (519)
Q Consensus 365 ~~ 366 (519)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=6.4e-09 Score=100.92 Aligned_cols=226 Identities=10% Similarity=0.053 Sum_probs=160.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CC-C-CcHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSML-EP----NDFTFTSILSACTGSGALGQGRSAHCQTIRM----GF-F-SYIQVAN 275 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~ 275 (519)
....+...|++++|+..|++..+.-. .+ ...++..+...+...|+++.|...+....+. +- . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456778888888888888765310 12 2356777788888888888888888776643 11 1 1245777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 044422 276 SLISMYCKCGNVEEAVYVFNNMHG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMK-----QRVKPDAITFL 341 (519)
Q Consensus 276 ~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~ 341 (519)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 888888888888888888876543 12 34677888888999999999999988776 3322 366778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 342 GVISSCRHGGLVEEGKVYFDSMAKH----GLKPELDHYSCVVDLLGRAGL---LEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
.+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +.+|..++++.+..|+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~---------- 335 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI---------- 335 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH----------
Confidence 8888899999999999999988753 222223445666666777777 88888888876432222
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...+..|+..|...|++++|...|++..+
T Consensus 336 ------~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 336 ------EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12455689999999999999999988754
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.21 E-value=2.2e-09 Score=106.83 Aligned_cols=303 Identities=10% Similarity=0.017 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHH-
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTR-----NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIID- 188 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~- 188 (519)
+.++|+..|++..+. ++..+..+...+...+ ++++|...|....+.|.. ..+..|...|...+..+.
T Consensus 53 d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~ 125 (452)
T 3e4b_A 53 QIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN 125 (452)
T ss_dssp ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT
T ss_pred CHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC
Confidence 447788888777653 4444555555333333 667788888888776632 256666666666554333
Q ss_pred --HHHHHccCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC---CchHHHHHHH
Q 044422 189 --AYKVFEEMP-VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNS--MLEPNDFTFTSILSACTGSG---ALGQGRSAHC 260 (519)
Q Consensus 189 --A~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~ 260 (519)
+.+.+.... ..++..+..+...|...+.++++........+. ...|+ .+..|...|...| +.++|...|+
T Consensus 126 ~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 126 VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 333333322 245667777777777777554444433222221 11333 6667777777788 7788888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCC
Q 044422 261 QTIRMGFFSYIQVANSLISMYCKC----GNVEEAVYVFNNMHGKDIVSWNSMIAG-Y--AQHGLAVRAIDLFEEMMKQRV 333 (519)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~ 333 (519)
...+.| +++...+..+...|... +++++|...|+.....++..+..+... + ...+++++|...|++..+.|
T Consensus 204 ~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 204 AGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 887777 55555556666666554 678888888887773355666666666 3 45788888888888888776
Q ss_pred CCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCH
Q 044422 334 KPDAITFLGVISSCRHGG-----LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGR----AGLLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~ 404 (519)
+...+..|-..|. .| ++++|...|++.. . -+...+..|...|.. ..++++|...|++.-
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa----- 349 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA----- 349 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH-----
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-----
Confidence 4555566665555 44 8888888888877 3 355666666666665 337888888877551
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC
Q 044422 405 VIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g~ 452 (519)
++.++.+...|...|.. .+++++|...|+...+.|.
T Consensus 350 ------------~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 350 ------------RNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ------------TTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ------------hhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 12334455556776664 4578888888888777764
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=2.1e-09 Score=104.51 Aligned_cols=281 Identities=9% Similarity=-0.057 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHhHC--CCCCCHH--HHHHHHHHH--hcCCChhhHH-----------HHHHHHHHhCCCChH----HHH
Q 044422 115 DVEKLISMHHDLHRE--RLKVDAS--FLSTAVTSC--GSTRNIRGGA-----------PYQCLAIRTGFIANV----YVG 173 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~--g~~p~~~--~~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~g~~~~~----~~~ 173 (519)
++++|..++++..+. .+..|.. .|-.++..- ...+++..+. +.++.+.......+. ..+
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN 106 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence 899999999988653 2323433 333343331 1223344444 666666543211111 112
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC-CHHH
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMPV-----R----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS----ML-EP-NDFT 238 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~t 238 (519)
-.....+...|++++|...|++... + ...+|..+..+|...|++++|...+++..+. +- .+ ...+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 2356677889999999999988753 2 2457889999999999999999999887652 11 11 2457
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IVS 304 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~ 304 (519)
+..+..+|...|++++|...++...+. +-. ....++..+...|...|++++|...|++..+ .+ ..+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 888899999999999999999887754 211 1235888999999999999999999987654 22 357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCc-CHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQR----VKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKP-ELDHYS 376 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~~~ 376 (519)
+..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++. +..| ....+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 8889999999999999999999876531 11122335667778888898 66666666655 3333 344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+...|...|++++|.+.+++.
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999865
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=3.5e-10 Score=113.27 Aligned_cols=191 Identities=6% Similarity=-0.121 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHhCCCH-HHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 169 NVYVGSSLITLYSKCRVI-IDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILS 244 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 244 (519)
+...+..+...+...|++ ++|++.|++.. +.+...|..+..+|.+.|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555555555555665 66655555543 233556666666666666666666666666654 355566666666
Q ss_pred HHHcc---------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------CCHHHHHHHHHhcCC--C----C
Q 044422 245 ACTGS---------GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC--------GNVEEAVYVFNNMHG--K----D 301 (519)
Q Consensus 245 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~--~----~ 301 (519)
.+... |++++|...++...+.. +.+...|..+..+|... |++++|...|++..+ | +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 66666 77777777777766654 44566667777777666 677777777776543 3 5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM 363 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (519)
...|..+..+|...|++++|...|++..+.. +-+...+..+...+...|++++|...+..+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677777777778888888888887776643 224556667777777777777777766554
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.19 E-value=1e-09 Score=109.19 Aligned_cols=302 Identities=11% Similarity=-0.039 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----CH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNI---RGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-----VI 186 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~ 186 (519)
++++|++.|+...+.| +...+..+...+...|+. ++|...|....+. +...+..|...+...+ ++
T Consensus 18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 6777888887777665 233334444445556666 7777777776643 4455555555444444 66
Q ss_pred HHHHHHHccCCC-CChhHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 187 IDAYKVFEEMPV-RNVVSWTAIIAAFAQEWQVDM---CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 187 ~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
++|...|++... .+...+..|...|...+..++ +.+.+......|. ......|...|...+.++.+......+
T Consensus 91 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 777777776653 344566677777766655333 3444444444332 234445666666666555544443333
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHHCC
Q 044422 263 IRMGFFSYIQVANSLISMYCKCG---NVEEAVYVFNNMHG---KDIVSWNSMIAGYAQH----GLAVRAIDLFEEMMKQR 332 (519)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~ 332 (519)
.+.-...+...+..|...|.+.| +.++|.+.|+...+ ++...+..+...|... +++++|...|++.. .|
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g 246 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG 246 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC
Confidence 22212223336777777777788 77788887776543 2333335566666444 57888888888776 32
Q ss_pred CCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCH
Q 044422 333 VKPDAITFLGVISS-C--RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG-----LLEEARDFIKQMPIYPNA 404 (519)
Q Consensus 333 ~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~ 404 (519)
+...+..|-.. + ...+++++|...|++..+.| +...+..|...|. .| ++++|.+.|++.-
T Consensus 247 ---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----- 314 (452)
T 3e4b_A 247 ---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----- 314 (452)
T ss_dssp ---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence 33444444444 3 45778888888888887766 5556666666666 44 7888888877663
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC
Q 044422 405 VIWEAAESRLLLEPECAATHVQLANLYAG----VRCWDQAARVRKLMKDKGL 452 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~g~ 452 (519)
+.++.++..|...|.. ..++++|...|++..+.|.
T Consensus 315 -------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 -------------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp -------------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred -------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4455566777888876 4599999999999888774
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=3.8e-09 Score=90.55 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788888899999999999998875 356788888899999999999999999988763 33677888888899
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHH
Q 044422 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQL 427 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L 427 (519)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ +...|.++.++..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~l 150 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA---------------LGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------HhcCccchHHHHHH
Confidence 99999999999999988753 456778888999999999999999988765 34557777788889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC
Q 044422 428 ANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+..|...|++++|.+.+++..+..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999987653
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=5.1e-09 Score=89.73 Aligned_cols=157 Identities=15% Similarity=0.002 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
..+..+...+...|++++|...|+++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566666777777777777777777753 345567777777777777777777777776543 334556666666666
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+ .+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776666553 33445555555555555555555555554332 2334444444555555555555555
Q ss_pred HHHHH
Q 044422 325 FEEMM 329 (519)
Q Consensus 325 ~~~m~ 329 (519)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=1.5e-09 Score=113.34 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044422 270 YIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS 346 (519)
Q Consensus 270 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 346 (519)
+...|+.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|...|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 355666677777777777777777766543 2456677777777777777777777777766421 145667777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHH
Q 044422 347 CRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQ 426 (519)
Q Consensus 347 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 426 (519)
+...|++++|.+.|++..+.. +-+...|..+..+|...|++++|.+.|++ +++++|+++.+|..
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~---------------Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRT---------------ALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHCSCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHhCCCChHHHhh
Confidence 777788888888777777643 22456777778888888888888776653 45677777778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 044422 427 LANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 427 L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
|+.+|...|++++|.+.+++..
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHH
Confidence 8888888888888877777654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=3.6e-08 Score=95.33 Aligned_cols=257 Identities=12% Similarity=0.051 Sum_probs=166.5
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChH----HHHHHHHHHHHhCCCHHHHHHHHccCCC-----CCh----hHHHHHH
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANV----YVGSSLITLYSKCRVIIDAYKVFEEMPV-----RNV----VSWTAII 208 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~li 208 (519)
...+...|+++.|...++...+..-..+. .+++.+...+...|++++|...+++... .+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33455678888888888777665311121 2456666777778888888887776641 222 2356667
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC----CcHHHHHHH
Q 044422 209 AAFAQEWQVDMCLELYRMMRNS----MLE--P-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF----SYIQVANSL 277 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l 277 (519)
..+...|++++|...+++.... +.. | ....+..+...+...|++++|...++...+..-. ....++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7788888888888888776542 222 3 2345566777788888888888888877654211 124567777
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCCh-hHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 044422 278 ISMYCKCGNVEEAVYVFNNMH----GKDI-VSWN-----SMIAGYAQHGLAVRAIDLFEEMMKQRVKP---DAITFLGVI 344 (519)
Q Consensus 278 i~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll 344 (519)
...+...|++++|...+++.. .++. ..+. ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 788888888888888887653 2221 1222 22344668888888888888775533211 123456667
Q ss_pred HHHHccCCHHHHHHHHHHHHH----cCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 345 SSCRHGGLVEEGKVYFDSMAK----HGLKPEL-DHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..+...|++++|...++...+ .|..++. ..+..+..++...|+.++|...+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 778888899888888887753 2322233 25666777888889999988888765
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=6.6e-08 Score=93.74 Aligned_cols=281 Identities=9% Similarity=-0.002 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHhHC--CCCCCH--HHHHHHHHHH--hcCCChhhHH---------HHHHHHHHhCCCChH----HHHHH
Q 044422 115 DVEKLISMHHDLHRE--RLKVDA--SFLSTAVTSC--GSTRNIRGGA---------PYQCLAIRTGFIANV----YVGSS 175 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~--g~~p~~--~~~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~g~~~~~----~~~~~ 175 (519)
++++|..++++..+. .+..|. ..|-.++..- .-.+....+. ..++.+.....+.+. ..+-.
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~ 106 (378)
T 3q15_A 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106 (378)
T ss_dssp CHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHH
Confidence 889999999887552 222233 3334443331 1112333333 666665432211111 12334
Q ss_pred HHHHHHhCCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCC-CHHHHH
Q 044422 176 LITLYSKCRVIIDAYKVFEEMPV-----RN----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS----M-LEP-NDFTFT 240 (519)
Q Consensus 176 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~t~~ 240 (519)
....+...|++++|...|++... ++ ..++..+..+|...|+++.|...+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 45567789999999999988652 22 457888999999999999999999887642 1 111 245788
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C---ChhHHHH
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRM----GFF-SYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----K---DIVSWNS 307 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~---~~~~~~~ 307 (519)
.+..+|...|++++|...++...+. +-. ....++..+..+|...|++++|.+.|++..+ . ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999887653 211 1245788999999999999999999987764 2 2457788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCcC-HHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRV---KPD-AITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKPE-LDHYSCVV 379 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li 379 (519)
+...+.+.|++++|...+++..+... .|. ...+..+...+...++ +++|...++. .+..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 88999999999999999999877421 122 3455666666777888 6666666665 333333 34567789
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 044422 380 DLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~ 398 (519)
..|...|++++|.+.+++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999865
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=1e-07 Score=92.08 Aligned_cols=251 Identities=9% Similarity=-0.041 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHhHCCCCCCHH----HHHHHHHHHhcCCChhhHHHHHHHHHHhC--C-CC--hHHHHHHHHHHHHhCCC
Q 044422 115 DVEKLISMHHDLHRERLKVDAS----FLSTAVTSCGSTRNIRGGAPYQCLAIRTG--F-IA--NVYVGSSLITLYSKCRV 185 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~-~~--~~~~~~~li~~~~~~g~ 185 (519)
++++|...++.........+.. .++.+...+...|+++.|...+....+.. . .+ ...++..+...+...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 8999999999987754222332 45566677888999999999999887532 1 11 12346778888999999
Q ss_pred HHHHHHHHccCCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccC
Q 044422 186 IIDAYKVFEEMPV----------R-NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE----PNDFTFTSILSACTGSG 250 (519)
Q Consensus 186 ~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g 250 (519)
+++|...+++... + ....+..+...+...|++++|...+++....... ....++..+...+...|
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC
Confidence 9999999887641 1 1235667888999999999999999988653211 12457788888999999
Q ss_pred CchHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCC
Q 044422 251 ALGQGRSAHCQTIRMGFFSY--IQVAN----SLISMYCKCGNVEEAVYVFNNMHGKD-------IVSWNSMIAGYAQHGL 317 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~ 317 (519)
++++|...++......-.++ ..... ..+..+...|++++|...++....++ ...+..+...+...|+
T Consensus 189 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 268 (373)
T 1hz4_A 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 268 (373)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999998875421111 11111 34455889999999999999887642 1246677888999999
Q ss_pred hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQ----RVKPDA-ITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 318 ~~~A~~~~~~m~~~----~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 269 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 269 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999887543 222222 2566667788899999999999998764
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=1.5e-09 Score=100.15 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRM------GF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-------K- 300 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~- 300 (519)
..++..+...+...|++++|...++.+.+. +- +....++..+...|...|++++|...|.+..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555556666665555555433 11 12244555566666666666666665554431 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 044422 301 ---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ------RVKP-DAITFLGVISSCRHGGLVEEGKVYFDSMAKH---- 366 (519)
Q Consensus 301 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 366 (519)
...++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2345666777777777777777777776653 1122 2456777778888888888888888877642
Q ss_pred ---CCCcC-HHHHHHHHHHHHHcCC------HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 367 ---GLKPE-LDHYSCVVDLLGRAGL------LEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 367 ---~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
...+. ...+..+...+...+. +..+...++... ...|....++..|+.+|...|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---------------VDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---------------CCCHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHHcCC
Confidence 11222 2223333333322222 233333333332 1122334577789999999999
Q ss_pred HHHHHHHHHHHHHC
Q 044422 437 WDQAARVRKLMKDK 450 (519)
Q Consensus 437 ~~~A~~~~~~m~~~ 450 (519)
+++|..++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=7.7e-09 Score=108.00 Aligned_cols=158 Identities=8% Similarity=0.060 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSAC 246 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 246 (519)
..+|+.|...|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555555555555555555543 2234455555556666666666666665555432 12345555566666
Q ss_pred HccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 044422 247 TGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
...|++++|.+.|++..+.. +.+...|+.+..+|.+.|++++|++.|++..+ .+...|..+..++...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 66666666666666555543 33455566666666666666666666665432 244556666666666666666665
Q ss_pred HHHHHH
Q 044422 324 LFEEMM 329 (519)
Q Consensus 324 ~~~~m~ 329 (519)
.+++..
T Consensus 167 ~~~kal 172 (723)
T 4gyw_A 167 RMKKLV 172 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=3.6e-09 Score=97.53 Aligned_cols=216 Identities=10% Similarity=-0.040 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHhCCCHHH
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT------GFIA-NVYVGSSLITLYSKCRVIID 188 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~g~~~~ 188 (519)
+++|+++++.......+....++..+...+...|+++.|...++.+.+. +-.| ...++..+...|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 4555555555543333445678888999999999999999999998865 3233 45689999999999999999
Q ss_pred HHHHHccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccC
Q 044422 189 AYKVFEEMPV-------R----NVVSWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEP-NDFTFTSILSACTGSG 250 (519)
Q Consensus 189 A~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g 250 (519)
|...|++... + ...+|..+...|...|++++|...|++..+. +-.| ...++..+...+...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999988752 1 2457888999999999999999999998764 1133 3567888999999999
Q ss_pred CchHHHHHHHHHHHc-------CCCC-cHHHHHHHHHHHHhcC------CHHHHHHHHHhcCCC---ChhHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRM-------GFFS-YIQVANSLISMYCKCG------NVEEAVYVFNNMHGK---DIVSWNSMIAGYA 313 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~------~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 313 (519)
++++|...++...+. ...+ ....+..+...+...+ .+..+...++..... ...++..+...|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988764 1112 2223333333333322 244455555554432 3457888999999
Q ss_pred HcCChHHHHHHHHHHHHC
Q 044422 314 QHGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 314 ~~g~~~~A~~~~~~m~~~ 331 (519)
..|++++|..++++..+.
T Consensus 264 ~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999987653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.99 E-value=3.9e-08 Score=87.85 Aligned_cols=206 Identities=8% Similarity=0.035 Sum_probs=147.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 044422 199 RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLI 278 (519)
Q Consensus 199 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 278 (519)
.|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++...+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888999999999999999998886643677777778899999999999999999988865 45677888999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-Ch-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHG--K-DI-------VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD---AITFLGVIS 345 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~ 345 (519)
.+|...|++++|...|++..+ | +. ..|..+...+...|++++|...|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999987754 3 33 45777778888889999999999988764 454 345555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHH
Q 044422 346 SCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHV 425 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 425 (519)
++... +..+++.+...+ ..+...|.... ....+.+++|...++ ++++++|.++.+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~---------------~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLG---------------EAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHH---------------HHHHHCTTCHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHH---------------HHhhcCCCCHHHHH
Confidence 55433 344455555543 22344443333 223344566666554 45667777766665
Q ss_pred HHHHH
Q 044422 426 QLANL 430 (519)
Q Consensus 426 ~L~~~ 430 (519)
.|...
T Consensus 219 ~l~~i 223 (228)
T 4i17_A 219 MQDQV 223 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=9.3e-08 Score=85.33 Aligned_cols=194 Identities=7% Similarity=-0.015 Sum_probs=149.7
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHccCC---C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044422 168 ANVYVGSSLITLYSKCRVIIDAYKVFEEMP---V-RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSIL 243 (519)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 243 (519)
.|+..+......+.+.|++++|+..|++.. + ++...+..+..++...|++++|+..|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 456788889999999999999999999875 3 677788889999999999999999999998864 33567889999
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYI-------QVANSLISMYCKCGNVEEAVYVFNNMHGK--D---IVSWNSMIAG 311 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~---~~~~~~li~~ 311 (519)
.++...|++++|...++...+.. +.+. .+|..+...+...|++++|.+.|++..+- + ...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999998864 3344 56888889999999999999999998763 3 3466667677
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 76544 34455554443 22344454443 23456789999999999874 35443
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=7.5e-08 Score=77.37 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLG 383 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (519)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|+++.|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56677778888888888888888887653 2356677777888888888888888888887654 345667778888888
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 384 RAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 384 ~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
..|++++|.+.++++ +...|.+..++..++.+|...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA---------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHH---------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888998888887765 23445566677778888999999999999988887643
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=1.9e-07 Score=85.87 Aligned_cols=248 Identities=8% Similarity=-0.041 Sum_probs=167.6
Q ss_pred HHHHHhCCCHHHHHHHHccCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHH
Q 044422 177 ITLYSKCRVIIDAYKVFEEMPVRNV-VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQG 255 (519)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 255 (519)
|+-..-.|++..++.-...+.+.+. ..-..+.++|...|+++.. ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3444557888888776666543222 2333345778888876642 12234443444333333 322 5
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 256 RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
...++...+.+ .++..++..+..++...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66677666655 455556668889999999999999999987432 456788889999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHHH--ccC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 044422 331 QRVKP-----DAITFLGVISSCR--HGG--LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP-I 400 (519)
Q Consensus 331 ~~~~p-----~~~t~~~ll~~~~--~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 400 (519)
. .| +..+...|..++. ..| +...|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+. .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 56 3667777777733 334 899999999998764 3553344445558999999999999988551 0
Q ss_pred CCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 401 YPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 401 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|+. +.--..+|.++.++..++......|+ +|.++++++++..
T Consensus 241 ~p~~------~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSV------EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHT------TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccc------cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0000 00000147778888788877777887 8899999998864
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=1e-07 Score=88.78 Aligned_cols=169 Identities=7% Similarity=-0.062 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh----CCCCh-HHHHHHHHHHHHhCCCHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT----GFIAN-VYVGSSLITLYSKCRVIIDA 189 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 189 (519)
++++|.+.|+.. ...+...|++++|...|....+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777777665 33566778888888888777553 22222 45677777777777777777
Q ss_pred HHHHccCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHccCCchH
Q 044422 190 YKVFEEMPV-----RN----VVSWTAIIAAFAQE-WQVDMCLELYRMMRNSM----LEPN-DFTFTSILSACTGSGALGQ 254 (519)
Q Consensus 190 ~~~~~~m~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g----~~p~-~~t~~~ll~~~~~~g~~~~ 254 (519)
+..|++... .+ ..+|+.+..+|... |++++|+..|++..+.. -.+. ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777665541 11 23555566666664 66666666666554321 0000 2345555555555666666
Q ss_pred HHHHHHHHHHcCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 255 GRSAHCQTIRMGFFSYI------QVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
|...++...+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66655555553211111 134444455555555555555555544
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=1.1e-07 Score=88.54 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--C-CHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 153 GGAPYQCLAIRTGFIANVYVGSSLITLYSKC--R-VIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
+|.+++.+..+. .+++...| .+ + +. + ++++|...|++. ...|...|++++|...|.+...
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 466666666554 23322222 22 2 32 2 478888777654 5577888999999998887754
Q ss_pred C----CCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 044422 230 S----MLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRM----GFFS-YIQVANSLISMYCKC-GNVEEAVYVFNNMH 298 (519)
Q Consensus 230 ~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~~~ 298 (519)
. |-+++ ..+|+.+..+|.+.|++++|...++...+. |-.. -..+++.+...|... |++++|...|++..
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 32222 468888999999999999999988877653 2111 145788899999996 99999999998765
Q ss_pred C--C---C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHH
Q 044422 299 G--K---D----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA------ITFLGVISSCRHGGLVEEGKVYFDSM 363 (519)
Q Consensus 299 ~--~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (519)
+ | + ..+++.+...+.+.|++++|...|++..+....... ..|..+..++...|+++.|...|++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 1 1 356888899999999999999999999886433222 15677777888999999999999998
Q ss_pred HHcCCCcCH------HHHHHHHHHHH--HcCCHHHHHHHHHhC-CCCC
Q 044422 364 AKHGLKPEL------DHYSCVVDLLG--RAGLLEEARDFIKQM-PIYP 402 (519)
Q Consensus 364 ~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~~-~~~p 402 (519)
.+ +.|+. ..+..++.+|. ..+++++|...|+.+ .+.|
T Consensus 226 l~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 226 QS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp GC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred Hh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 75 23332 23444566664 456799999999876 3444
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.85 E-value=1.5e-06 Score=89.74 Aligned_cols=215 Identities=7% Similarity=-0.069 Sum_probs=145.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR-SAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
+..+|++.... ++-+...|...+..+...|+.++|. .+++..... ++.+...+-..+...-+.|+++.|.++|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555443 2334455555555666778888886 899888764 46677778888888889999999999998775
Q ss_pred C-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcc-C
Q 044422 299 G-------------KD------------IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPDAITFLGVISSCRHG-G 351 (519)
Q Consensus 299 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-g 351 (519)
+ |+ ...|...+....+.|+.+.|..+|.+..+. +. +....|......-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 3 21 235777777777888999999999998876 21 1223333222222233 4
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 352 LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 352 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
+.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|+.. ...|+. ......|...+..
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~-------------~~~~~lw~~~~~f 550 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS-------------HLLKMIFQKVIFF 550 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST-------------THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHH
Confidence 589999999988865 3446667778888888889999999999876 222210 0112344445777
Q ss_pred HhccCCHHHHHHHHHHHHHCC
Q 044422 431 YAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 431 ~~~~g~~~~A~~~~~~m~~~g 451 (519)
-.+.|+.+.+.++.++|.+.-
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777888888888888887654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=1.3e-07 Score=75.93 Aligned_cols=125 Identities=14% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYC 282 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (519)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666655433 2244455555555556666666666665555443 233344444444444
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 283 KCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 283 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
..|++++|...++.+.+ .+...+..+...+.+.|++++|...++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444443321 123334444444444444444444444443
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=7.3e-08 Score=79.83 Aligned_cols=144 Identities=11% Similarity=-0.026 Sum_probs=112.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
|...+...|++++|+..+...... +...+..+...|.+.|++++|.+.|++..+... -+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCch
Confidence 344556677889999998887764 345667788899999999999999999887642 2677888899999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhc
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAG 433 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 433 (519)
++|...|++..+.. +-+...+..+...|.+.|++++|.+.+ ++++++++|.++.+|......+..
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~--------------~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYW--------------VERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHH--------------HHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH--------------HHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999853 235778888999999999987766543 245678888888888888888877
Q ss_pred cCC
Q 044422 434 VRC 436 (519)
Q Consensus 434 ~g~ 436 (519)
.|+
T Consensus 147 ~G~ 149 (150)
T 4ga2_A 147 EGE 149 (150)
T ss_dssp CCC
T ss_pred hCc
Confidence 775
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.1e-07 Score=99.51 Aligned_cols=171 Identities=10% Similarity=-0.009 Sum_probs=132.8
Q ss_pred HccCCchHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc
Q 044422 247 TGSGALGQGRSAHCQTI--------RMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQH 315 (519)
Q Consensus 247 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 315 (519)
...|++++|.+.++... +.. +.+...+..+..+|...|++++|...|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77889999999998887 332 55677888889999999999999999988764 3667888888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 316 GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
|++++|...|++..+... -+...+..+..++...|++++ ...|++..+.+ +-+...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887532 256678888888999999999 99999988754 335678888999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC
Q 044422 396 KQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 396 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
++.. +++|.+..++..+..++...|+
T Consensus 558 ~~al---------------~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVP---------------PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSC---------------TTSTTHHHHHHHHHHHTC----
T ss_pred Hhhc---------------ccCcccHHHHHHHHHHHHccCC
Confidence 8762 3444445555666666655444
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.73 E-value=1.4e-06 Score=80.07 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=112.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGF-FSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
++..|++....+ .++..++..+..++...|++++|.+++......+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665554 45555556777777778888888888877765542 2456677777888888888888888887776
Q ss_pred C--C-----ChhHHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 044422 299 G--K-----DIVSWNSMIAG--YAQHG--LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH- 366 (519)
Q Consensus 299 ~--~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~- 366 (519)
+ | +..+...+..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 3 13444555555 22233 788888888887654 345334444555778888888888888866532
Q ss_pred ----C----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 367 ----G----LKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 367 ----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
. -+-+..++..+|......|+ +|.++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 0 02355566455555555666 666666655
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.72 E-value=8.5e-07 Score=80.89 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhHHH
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY---IQVANSLISMYCKCGNVEEAVYVFNNMHG--K----DIVSWN 306 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~ 306 (519)
...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444445555555555555555555555432 112 34445555555555555555555554432 1 112344
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 044422 307 SMIAGYAQ--------HGLAVRAIDLFEEMMKQRVKPDA-ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSC 377 (519)
Q Consensus 307 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 377 (519)
.+..++.. .|++++|...|++..+.. |+. .....+ ..+..+... -...+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHHHH
Confidence 44444444 555555555555544431 111 111000 000000000 0011356
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC---CchhHHHHHHHHhcc----------CCHHHHHHHH
Q 044422 378 VVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPE---CAATHVQLANLYAGV----------RCWDQAARVR 444 (519)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~----------g~~~~A~~~~ 444 (519)
+...|.+.|++++|...|+++ +...|+ .+.++..++.+|... |++++|...+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAV---------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH---------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 788899999999999998865 233344 234677788888876 9999999999
Q ss_pred HHHHHCC
Q 044422 445 KLMKDKG 451 (519)
Q Consensus 445 ~~m~~~g 451 (519)
++..+.-
T Consensus 219 ~~~~~~~ 225 (261)
T 3qky_A 219 ERLLQIF 225 (261)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 9998754
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.70 E-value=5.8e-07 Score=82.01 Aligned_cols=183 Identities=9% Similarity=-0.052 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPV--R-N---VVSWTAIIAAFAQEWQVDMCLELYRMMRNSML-EPN-DFTFT 240 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~t~~ 240 (519)
+...+-.+...+.+.|++++|+..|+++.. | + ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666677777777777777777652 2 2 44666677777777777777777777766421 112 34555
Q ss_pred HHHHHHHc--------cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 044422 241 SILSACTG--------SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGY 312 (519)
Q Consensus 241 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 312 (519)
.+..++.. .|++++|...++.+.+.. +.+.....++.......+ .-...+..+...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~--------------~~~~~~~~la~~~ 158 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRA--------------KLARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 56666666 777777777777766643 212222211111100000 0011245567778
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHc
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHG----------GLVEEGKVYFDSMAKH 366 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~----------g~~~~a~~~~~~m~~~ 366 (519)
.+.|++++|...|+++.+..... ....+..+..++... |++++|...++++.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 88899999999888887753221 234566666677655 8888899988888864
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=7.3e-07 Score=78.30 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=11.2
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 044422 209 AAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~ 229 (519)
..+...|++++|+..|++..+
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555555544
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=1.1e-06 Score=81.51 Aligned_cols=176 Identities=9% Similarity=0.017 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHc
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFE 194 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 194 (519)
+.+.....+.... +.+...+..+...+.+.|+++.|...++..++.. +-+...+..+...+.+.|++++|...++
T Consensus 101 ~~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 101 PEEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444554443 3455666677777788888888888888888764 4466778888888888888888888888
Q ss_pred cCCC--CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-Cc
Q 044422 195 EMPV--RNVVSWTAI-IAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-SY 270 (519)
Q Consensus 195 ~m~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 270 (519)
+... |+....... ...+...++.++|...|++..... +.+...+..+...+...|++++|...+..+.+..-. .+
T Consensus 176 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 176 TIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp TSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred hCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 8864 443332222 223556677777888887776653 345667777788888888888888888877775411 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
...+..++..|...|+.++|...|++
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56677777777777777666666553
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=3.7e-07 Score=95.53 Aligned_cols=168 Identities=8% Similarity=-0.100 Sum_probs=135.4
Q ss_pred hcCCChhhHHHHHHHHH--------HhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhc
Q 044422 146 GSTRNIRGGAPYQCLAI--------RTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE 214 (519)
Q Consensus 146 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 214 (519)
...|++++|...++... +. .+.+...+..+..++.+.|++++|+..|++.. ..+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 32 24456788888999999999999999999886 35677899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVF 294 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 294 (519)
|++++|...|++..+.. +-+...+..+..++.+.|++++ ...|+...+.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988754 2356778889999999999999 99999988875 556788899999999999999999999
Q ss_pred HhcCCC---ChhHHHHHHHHHHHcCC
Q 044422 295 NNMHGK---DIVSWNSMIAGYAQHGL 317 (519)
Q Consensus 295 ~~~~~~---~~~~~~~li~~~~~~g~ 317 (519)
++..+- +...|..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 988763 34566667777665554
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=1.6e-06 Score=76.09 Aligned_cols=169 Identities=12% Similarity=0.063 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHhcCC-
Q 044422 237 FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANS----------------LISMYCKCGNVEEAVYVFNNMHG- 299 (519)
Q Consensus 237 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~- 299 (519)
..+......+...|++++|...|+...+.. +.+...+.. +..+|.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667788999999999999998864 334556666 89999999999999999998764
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCcCHHHH
Q 044422 300 --KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL--VEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 300 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
.+...|..+...+...|++++|...|++..+.. +-+..++..+..++...|. .+.+...++.... ..|....+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 367889999999999999999999999998863 2256677777777765553 3344555554432 22333344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 044422 376 SCVVDLLGRAGLLEEARDFIKQM-PIYPNAVIWEA 409 (519)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 409 (519)
.....++...|++++|...|++. ...|+......
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44566677789999999999875 56677554433
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=7.3e-07 Score=83.59 Aligned_cols=220 Identities=8% Similarity=-0.068 Sum_probs=132.5
Q ss_pred CCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 044422 148 TRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
.|++++|.++++...+.. +.. .+...++++.|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666554431 110 01114566666665543 245566667777777766655
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 228 RNS----MLEPN-DFTFTSILSACTGSGALGQGRSAHCQTIRM----GFFS-YIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 228 ~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
... +-.+. ..+|+.+...|...|++++|...++...+. |-.. ...++..+...|.. |++++|...|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 431 21111 346667777777777887777777766543 2111 13566777777777 8888888777765
Q ss_pred CC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 044422 298 HG-----KD----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQ----RVKPD-AITFLGVISSCRHGGLVEEGKVYFDSM 363 (519)
Q Consensus 298 ~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (519)
.+ .+ ..+++.+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|++++|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 11 356777888888899999999888887653 21111 225555666677779999999999888
Q ss_pred HHcCCCcC------HHHHHHHHHHHHHcCCHHHHHH
Q 044422 364 AKHGLKPE------LDHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 364 ~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~ 393 (519)
. . .|+ ......++.++ ..|+.+.+.+
T Consensus 222 l-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 222 Y-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp T-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred h-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7 3 232 12344455555 5677666665
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=9.4e-07 Score=90.63 Aligned_cols=162 Identities=7% Similarity=-0.081 Sum_probs=122.0
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLF 325 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 325 (519)
.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999887764 45678899999999999999999999998765 35678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc---CCHHHHHHHHHhCCCCC
Q 044422 326 EEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA---GLLEEARDFIKQMPIYP 402 (519)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~p 402 (519)
++..+.. +-+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~----- 153 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA----- 153 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH-----
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH-----
Confidence 9998763 3357788899999999999999999999998754 33577888899999999 999999987764
Q ss_pred CHHHHHHHHHhhhcCCCCchhHHHHH
Q 044422 403 NAVIWEAAESRLLLEPECAATHVQLA 428 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~L~ 428 (519)
+++.+|.+...|..|.
T Consensus 154 ----------al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 154 ----------AVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----------HHHHTCCCSCHHHHTT
T ss_pred ----------HHhcCCcccChHHHhC
Confidence 4688999888887666
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=1.4e-06 Score=74.17 Aligned_cols=154 Identities=12% Similarity=0.015 Sum_probs=86.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSA-CTG 248 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 248 (519)
+..+...+.+.|++++|...|++... .+...+..+..++.+.|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 33445556667777777777776652 345566666777777777777777776664432 233222211111 112
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhHHHHHHHHHHHcCChHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KD---IVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 323 (519)
.+....|...++...+.. +.+...+..+...+...|++++|...|+++.+ |+ ...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334556666655543 33456666666666666666666666665543 21 3356666666666666666666
Q ss_pred HHHHHH
Q 044422 324 LFEEMM 329 (519)
Q Consensus 324 ~~~~m~ 329 (519)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=2.9e-05 Score=71.97 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=159.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CchHHHHHHHHHHHcCCCCcHHHHHHHHHHH----Hhc---
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG--ALGQGRSAHCQTIRMGFFSYIQVANSLISMY----CKC--- 284 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 284 (519)
....++|+.+++++...+ +-+...|+.--..+...| +++++...++.+.... +-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334568888888887753 223455677777777777 8888888888888764 34445554443333 444
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------H
Q 044422 285 GNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAV--RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL------V 353 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~------~ 353 (519)
+++++++.+++.+.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888764 46677877777778888888 999999999987655 77777776666667676 8
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHh
Q 044422 354 EEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE-ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYA 432 (519)
Q Consensus 354 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 432 (519)
+++.+.++.+.... +-|...|+.+-..+.+.|+..+ +.++++++-. .+ ..+|.++.++..|+.+|.
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD-LE-----------KDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE-GG-----------GTEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh-cc-----------CCCCCCHHHHHHHHHHHH
Confidence 88999999988754 4478888888888888887443 4456655410 00 123667778888999999
Q ss_pred ccCCHHHHHHHHHHHHH
Q 044422 433 GVRCWDQAARVRKLMKD 449 (519)
Q Consensus 433 ~~g~~~~A~~~~~~m~~ 449 (519)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 99999999999999875
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=1.2e-06 Score=74.53 Aligned_cols=158 Identities=8% Similarity=-0.029 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 044422 274 ANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISS-CRH 349 (519)
Q Consensus 274 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~ 349 (519)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|...+++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34455667777778888887777664 355677777777778888888888877765432 233322221111 112
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC--chhHHHH
Q 044422 350 GGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC--AATHVQL 427 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~L 427 (519)
.+....+...+++..+.. +-+...+..+...+...|++++|...++++ ++.+|.. +.++..|
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI---------------LKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTCTTTTTTHHHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH---------------HHhCcccChHHHHHHH
Confidence 122234577777777642 225677778888888888888888877754 3344432 4466778
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 044422 428 ANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
+.+|...|+.++|...|++...
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888888888888887643
No 105
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=1.8e-05 Score=73.34 Aligned_cols=209 Identities=12% Similarity=-0.006 Sum_probs=137.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ---VANSLISMYCKCGNVEEAVYVFNNMHG 299 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~ 299 (519)
.+.++......|+..+...+...+.-.- +.+.......+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444444345677776666665553221 1111111122222 333446788899999999999988654
Q ss_pred C-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 300 K-----D----IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-PD----AITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 300 ~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
. + ...+..+...+...|++++|...+++..+.... ++ ..+++.+...|...|++++|...++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1 113334666677788999999999999884322 23 23688899999999999999999999884
Q ss_pred ----c-CCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCC-HH
Q 044422 366 ----H-GLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRC-WD 438 (519)
Q Consensus 366 ----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~-~~ 438 (519)
. +..+. ..++..+...|.+.|++++|.+++++.- . +.+-....+.-..+|..++.+|.+.|+ ++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al--------~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 254 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI--------E-ISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------H-HHHHTTBCTTHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------H-HHHHcCcHHHHHHHHHHHHHHHHHhCCcHH
Confidence 2 22222 3477889999999999999999988651 0 000001111224578889999999995 69
Q ss_pred HHHHHHHHHHH
Q 044422 439 QAARVRKLMKD 449 (519)
Q Consensus 439 ~A~~~~~~m~~ 449 (519)
+|.+.+++...
T Consensus 255 ~A~~~~~~Al~ 265 (293)
T 3u3w_A 255 EIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=3e-06 Score=75.34 Aligned_cols=182 Identities=15% Similarity=0.052 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHcCCC-C-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHH
Q 044422 236 DFTFTSILSACTGSGALGQGRSAHCQTIRMGFF-S-YIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDI----VSWNS 307 (519)
Q Consensus 236 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~ 307 (519)
...+..+...+.+.|++++|...|+.+.+..-. + ....+..+..+|.+.|++++|...|+.+.+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556667778888888888888888765311 1 235667777888888888888888887653 321 13444
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 044422 308 MIAGYAQ------------------HGLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 308 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 368 (519)
+..++.. .|++++|...|+++.+. .|+.. ...... + ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHHH----
Confidence 4444443 34455555555555543 12211 111000 0 000000000
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCc---hhHHHHHHHHhccCCHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECA---ATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
.....+...|.+.|++++|...|+++ ++..|+++ .++..++.+|.+.|++++|.+.++
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~---------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGM---------------LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHH---------------HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 01134567788999999999988865 33444443 467789999999999999999999
Q ss_pred HHHHCCC
Q 044422 446 LMKDKGL 452 (519)
Q Consensus 446 ~m~~~g~ 452 (519)
.+...+.
T Consensus 209 ~l~~~~~ 215 (225)
T 2yhc_A 209 IIAANSS 215 (225)
T ss_dssp HHHHCCS
T ss_pred HHHhhCC
Confidence 9988763
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=7e-06 Score=72.19 Aligned_cols=160 Identities=8% Similarity=0.006 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CchHHHHHHHHHHHcCCCCcHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG----ALGQGRSAHCQTIRMGFFSYIQVAN 275 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (519)
++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|...|+...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555566666666666655544 33444455555555 4 5666666666665544 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 044422 276 SLISMYCK----CGNVEEAVYVFNNMHGKD-----IVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQRVKPDAITFLG 342 (519)
Q Consensus 276 ~li~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 342 (519)
.|...|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 55555555 566777777776665432 4666666666766 667777777777776651 23334555
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHHHHHcCC
Q 044422 343 VISSCRHG-G-----LVEEGKVYFDSMAKHGL 368 (519)
Q Consensus 343 ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 368 (519)
|-..|... | +.++|...|+...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55555432 2 67778777777777663
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=3.7e-06 Score=77.89 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH-HHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG--KDIVSWN-SMI 309 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~li 309 (519)
+.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...++.+.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345566677777888888888888888887764 55677888888888888888888888888765 4433222 222
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHHcCCH
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK-PELDHYSCVVDLLGRAGLL 388 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 388 (519)
..+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..-. .+...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33667777888888888887753 335677888888888999999999999998874311 1266788888999999998
Q ss_pred HHHHHHHHh
Q 044422 389 EEARDFIKQ 397 (519)
Q Consensus 389 ~~A~~~~~~ 397 (519)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 888887764
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=3.7e-06 Score=73.96 Aligned_cols=141 Identities=8% Similarity=-0.094 Sum_probs=76.6
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----CHHHHHHHH
Q 044422 118 KLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR----VIIDAYKVF 193 (519)
Q Consensus 118 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 193 (519)
+|+..|++..+.| ++..+..+-..+...+++++|...|+...+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666654 55666666666666677777777777766655 44455555555555 4 566666666
Q ss_pred ccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCCchHHHHHHHHHH
Q 044422 194 EEMPV-RNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSMLE-PNDFTFTSILSACTG----SGALGQGRSAHCQTI 263 (519)
Q Consensus 194 ~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~ 263 (519)
++..+ .++.++..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...++...
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 55542 344455555555544 45555555555555544311 013344444444444 445555555555554
Q ss_pred Hc
Q 044422 264 RM 265 (519)
Q Consensus 264 ~~ 265 (519)
+.
T Consensus 157 ~~ 158 (212)
T 3rjv_A 157 SL 158 (212)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=3.9e-06 Score=73.60 Aligned_cols=93 Identities=5% Similarity=-0.146 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
.+..+...+...|++++|...|++..+++...|..+..++.+.|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344556667777888888888887777777777777778888888888888887776643 3355667777777777777
Q ss_pred chHHHHHHHHHHHc
Q 044422 252 LGQGRSAHCQTIRM 265 (519)
Q Consensus 252 ~~~a~~~~~~~~~~ 265 (519)
+++|...++...+.
T Consensus 87 ~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.51 E-value=4e-07 Score=75.30 Aligned_cols=111 Identities=13% Similarity=-0.036 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
+-.+...|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..|++..+.. +-+...+..+...+.+.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3444555555555555555555543 2344455555555555555555555555555432 12344555555555555
Q ss_pred CCchHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 044422 250 GALGQGRSA-HCQTIRMGFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 250 g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 285 (519)
|+.+++.+. ++...+.. |.+..+|......+...|
T Consensus 113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 555444332 34444432 333444444444444433
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.50 E-value=2.7e-06 Score=87.25 Aligned_cols=147 Identities=5% Similarity=-0.146 Sum_probs=73.5
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYR 225 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 225 (519)
|++++|...++...+.. +-+...+..+...+.+.|++++|.+.|++..+ .+...|..+..+|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666555432 22345566666666666666666666655432 234455666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHhcC
Q 044422 226 MMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC---GNVEEAVYVFNNMH 298 (519)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~ 298 (519)
+..+.. +-+...+..+..++.+.|++++|.+.++...+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 655542 2234555556666666666666666666655543 33445555555666665 56666666555543
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=2.4e-06 Score=79.98 Aligned_cols=169 Identities=11% Similarity=-0.039 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCCHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM----GFFS-YIQVANSLISMYCKCGNVE 288 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~ 288 (519)
.++++.|...|.+ ....|...|++++|...+....+. +-.. -..+|+.+...|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAK---------------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 3556666666554 356778899999999998877653 2111 2458889999999999999
Q ss_pred HHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCCHH
Q 044422 289 EAVYVFNNMHG-------K--DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR----VKP-DAITFLGVISSCRHGGLVE 354 (519)
Q Consensus 289 ~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~t~~~ll~~~~~~g~~~ 354 (519)
+|...|++..+ + -..+++.+...|.. |++++|+..|++..+.. -.+ ...++..+...+...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99888876542 1 13577888888888 99999999999876531 111 1457788889999999999
Q ss_pred HHHHHHHHHHH----cCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 355 EGKVYFDSMAK----HGLKPE-LDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 355 ~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+|...|++..+ .+..+. ...+..+..++...|++++|...|++.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875 222222 235667777888889999999999875
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=1.5e-05 Score=74.05 Aligned_cols=61 Identities=3% Similarity=-0.142 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPD-AITFLGVISSCRHGG-LVEEGKVYFDSMA 364 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~m~ 364 (519)
+|..+...|.+.|++++|...+++..+ .+..+. ..+|..+..++.+.| ..++|...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 444555555555555555555554432 111111 344555555555555 3455555555544
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.47 E-value=7.2e-06 Score=72.81 Aligned_cols=60 Identities=7% Similarity=-0.138 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV--RN----VVSWTAIIAAFAQEWQVDMCLELYRMMRNS 230 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 230 (519)
..+-.+...+.+.|++++|+..|+++.. |+ ...+..+..++.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444455666677777777777776652 22 235666666777777777777777776654
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=9.1e-06 Score=71.21 Aligned_cols=125 Identities=7% Similarity=-0.052 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL 352 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (519)
.+..+...+...|++++|...|++...++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455667788889999999999999888888899999999999999999999999988764 3366788888889999999
Q ss_pred HHHHHHHHHHHHHcC--------------CCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 353 VEEGKVYFDSMAKHG--------------LKP-ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+++|...|++..+.. ..| ....+..+..+|...|++++|.+.++..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999988742 111 2367888999999999999999988865
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=8.2e-06 Score=68.08 Aligned_cols=130 Identities=9% Similarity=0.028 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888877653 2356677777888888888888888888887653 34567788888888
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHH--HHHHhccCCHHHHHHHHHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQL--ANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L--~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
...|++++|...+++. +.+.|.+...+..+ +..+...|++++|++.++....
T Consensus 92 ~~~~~~~~A~~~~~~a---------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888877754 34455555555333 4447778889999888887643
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.41 E-value=7.4e-06 Score=65.25 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+......|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556667777777777777777766643 2356667777777777777777777777777643 33466677777777
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLAN 429 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~ 429 (519)
...|++++|.+.|++. ++++|.+..++..|..
T Consensus 92 ~~~~~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDA---------------LQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH---------------HHHCcCCHHHHHHHHH
Confidence 7777777777766543 4556666555555443
No 119
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.40 E-value=2.9e-05 Score=80.17 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHc-C-CCCcHHHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRM-G-FFSYIQVANSLISMYCKC-GNVEEAVYVFNNMHG---KDIVSWNSMIAG 311 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~li~~ 311 (519)
.|...+....+.|..+.|..+|....+. + ..+...+..+.+. .+. ++.+.|..+|+...+ .+...|...+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 3444445445555555555555555543 1 1122222222222 222 235555555554443 233444455555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
....|+.+.|..+|++.......+ ....|...+.--...|+.+.+..+.+++.+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666555442211 123455555555555666666666666665
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=3.9e-06 Score=69.17 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLE 417 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (519)
..+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++ ++.++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~---------------al~l~ 100 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAV---------------AFALG 100 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHH---------------HHhhC
Confidence 356666777888999999999999988753 34677888899999999999999987764 46788
Q ss_pred CCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 418 PECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 418 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
|+++.+|..+..+|...|++++|...|++..+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988764
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=6.5e-06 Score=71.39 Aligned_cols=80 Identities=11% Similarity=-0.053 Sum_probs=34.0
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------C---ChhHHHHHHHHHHHcCCh
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG------K---DIVSWNSMIAGYAQHGLA 318 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~---~~~~~~~li~~~~~~g~~ 318 (519)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+ . ...+++.+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 112344455555555555555555555544332 0 122344444444445555
Q ss_pred HHHHHHHHHH
Q 044422 319 VRAIDLFEEM 328 (519)
Q Consensus 319 ~~A~~~~~~m 328 (519)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=3.6e-06 Score=73.05 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRN----SMLEP-NDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..+++.+...+...|++++|...+++... .+..| ...++..+...+...|++++|...++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444445555555555554444432 11111 1233444444444555555554444443
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.37 E-value=0.00018 Score=66.58 Aligned_cols=212 Identities=8% Similarity=0.045 Sum_probs=121.8
Q ss_pred hhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CHHHHHHHHccCC---CCChhHHHHHHHHH----Hhc---CChH
Q 044422 151 IRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR--VIIDAYKVFEEMP---VRNVVSWTAIIAAF----AQE---WQVD 218 (519)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~----~~~---~~~~ 218 (519)
-++|...++.++... +-+..+|+.--.++...| ++++++++++.+. +.+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 346777777777664 334455676666777777 7888888777765 23445555544444 444 6777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCch--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC------HHHH
Q 044422 219 MCLELYRMMRNSMLEPNDFTFTSILSACTGSGALG--QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN------VEEA 290 (519)
Q Consensus 219 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~a 290 (519)
+++.+++++.+.. +-+-.+|+.-.-.+.+.|.++ ++.+.++.+.+.. +-+-..|+--...+.+.++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888887777654 345666666666666677766 7777777777665 4455555555444444444 5555
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 291 VYVFNNMHG---KDIVSWNSMIAGYAQHGLAVR-AIDLFEEMMKQR--VKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
++.++.+.. .|..+|+-+-..+.+.|+... +..+.++..+.+ -..+...+..+..++.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 555554432 244555555555555555322 333333333211 12244455555555555566666666666555
Q ss_pred H
Q 044422 365 K 365 (519)
Q Consensus 365 ~ 365 (519)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 3
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=1.4e-05 Score=62.71 Aligned_cols=94 Identities=13% Similarity=0.251 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 455556666666666666666666665542 2245556666666666666666666666666542 23455666666666
Q ss_pred HHcCCHHHHHHHHHhC
Q 044422 383 GRAGLLEEARDFIKQM 398 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~ 398 (519)
...|++++|...++++
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 6777777766666543
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=1.7e-05 Score=73.58 Aligned_cols=25 Identities=0% Similarity=-0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
...+..+...|++++|.+.+++..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~ 103 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 3344555566666666666655544
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=9e-06 Score=77.13 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--------------AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.|..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444445555555555555555444321111 3567777777888888888888888887653 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHH-HHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQA-ARVRKLMK 448 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A-~~~~~~m~ 448 (519)
.+...|..+..+|...|++++|...|++. ++++|.+..++..|..++...|++++| ...++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKV---------------LQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888888888776643 566777777888888888888888887 44555553
No 127
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.31 E-value=0.0011 Score=66.15 Aligned_cols=203 Identities=12% Similarity=-0.028 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHh
Q 044422 218 DMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA-VYVFNN 296 (519)
Q Consensus 218 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~ 296 (519)
+++..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566777776643 445666777777778889999999999988887 444433332 2221111111 112221
Q ss_pred cC--C-------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 044422 297 MH--G-------K---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCR-HGGLVEEGKVYFDSM 363 (519)
Q Consensus 297 ~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~m 363 (519)
.. . + ....|...+....+.++.+.|..+|++. +. ...+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 0 1 1245666666666788899999999998 32 1234444443222212 234699999999998
Q ss_pred HHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHH
Q 044422 364 AKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 364 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
.+.. +-++..+...++.....|+.+.|..+|+.+. .....|.. .+..-...|+.+.+.++
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~-----------------~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDS-----------------MIEYEFMVGSMELFREL 406 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHH-----------------HHHHHHHHSCHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHH-----------------HHHHHHHCCCHHHHHHH
Confidence 8642 2235556777888888999999999999983 23444444 45555667999999998
Q ss_pred HHHHHH
Q 044422 444 RKLMKD 449 (519)
Q Consensus 444 ~~~m~~ 449 (519)
++++.+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=3.9e-05 Score=70.64 Aligned_cols=192 Identities=10% Similarity=-0.025 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 044422 235 NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAG 311 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 311 (519)
+...+..+...+.+.|++++|...++...+.. +.+...|..+..+|.+.|++++|...++...+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566667777777777777777777777654 44677777888888888888888888887665 255677888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKPDA-ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
|...|++++|...|++..+.. |+. ..+...+....+. ..+ .-+..........+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 888888888888888776532 110 0011111111111 111 122223333444555554444332 2678888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhcc-CCHHHHHHHHHHHHHC
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGV-RCWDQAARVRKLMKDK 450 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~~ 450 (519)
|.+.++.. ++++|.+......+...+.+. +++++|.++|++..+.
T Consensus 154 A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRN---------------HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGG---------------GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhh---------------hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88777654 233343333444455556555 6788999999887654
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=1.6e-05 Score=63.38 Aligned_cols=118 Identities=12% Similarity=0.024 Sum_probs=79.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34566677777777777777777777776643 2256667777777777788888888877777643 335666777777
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 381 LLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 381 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
.+.+.|++++|.+.+++. +..+|.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKA---------------LDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHH---------------HHhCCCchHHHHHHHHHHHHhc
Confidence 778888888887776644 3445555556666666665554
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=1.5e-05 Score=62.50 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
++..+..++...|++++|...|+++.... +.+..++..+...+...|++++|...++.+.+
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444444444444444444443321 12333344444444444444444444444433
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=1.6e-05 Score=62.98 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555556666666666666666665532 2245555666666666666666666666666532 22355566666666
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCH
Q 044422 383 GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCW 437 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~ 437 (519)
...|++++|...+++. +...|.++.++..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~---------------~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKA---------------LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHH---------------HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHH---------------HhcCccchHHHHHHHHHHHHHhcC
Confidence 6667766666665543 334455555555566666655543
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.27 E-value=2.2e-05 Score=65.40 Aligned_cols=90 Identities=10% Similarity=0.100 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444445555555555554444332 1233444444444444445555444444444432 2233334444444444
Q ss_pred cCCHHHHHHHHH
Q 044422 284 CGNVEEAVYVFN 295 (519)
Q Consensus 284 ~~~~~~a~~~~~ 295 (519)
.|++++|...|+
T Consensus 94 ~~~~~~A~~~~~ 105 (166)
T 1a17_A 94 LGKFRAALRDYE 105 (166)
T ss_dssp TTCHHHHHHHHH
T ss_pred hccHHHHHHHHH
Confidence 444444444443
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=1.5e-05 Score=63.41 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
.+......|.+.|++++|+..|++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 44445555555555555555555543 2344455555555555555555555555555432 2234455555555555
Q ss_pred cCCchHHHHHHHHHHHc
Q 044422 249 SGALGQGRSAHCQTIRM 265 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~ 265 (519)
.|++++|.+.|+...+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555555554
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.26 E-value=3.7e-06 Score=69.24 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++. +.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~l 84 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG---------------AVM 84 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------Hhc
Confidence 3455566677788888888888888887643 346777778888888888888888877643 567
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+|.++.++..+..+|...|++++|...|++..+..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888888888888888999999988888876653
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.25 E-value=0.00013 Score=67.50 Aligned_cols=161 Identities=15% Similarity=0.093 Sum_probs=102.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hh
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSY-----IQVANSLISMYCKCGNVEEAVYVFNNMHG-----KD----IV 303 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 303 (519)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677788888888888877766432211 12334455666777788888887776532 11 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc-CH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQ-RVKPD-----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLKP-EL 372 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 372 (519)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777788888888888888776521 01112 146677777777888888888887776642 1111 14
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHhC
Q 044422 373 DHYSCVVDLLGRAGLLEEA-RDFIKQM 398 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A-~~~~~~~ 398 (519)
.+|..+...|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5667777777778887777 6555543
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=3.1e-06 Score=73.46 Aligned_cols=157 Identities=11% Similarity=-0.009 Sum_probs=102.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC--------------HHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVK-PD--------------AITF 340 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~t~ 340 (519)
......|+++++.+.|+...+. ....+..+...+...|++++|...|++..+.... |+ ...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455566666655533221 3446677777888889999999999888774321 11 2677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC 420 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 420 (519)
..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++. +.++|.+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~ 155 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA---------------ASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------HHHSTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH---------------HHHCCCc
Confidence 888888999999999999999998753 346778888999999999999999887744 5667778
Q ss_pred chhHHHHHHHHhccCCHHHHH-HHHHHHHHCC
Q 044422 421 AATHVQLANLYAGVRCWDQAA-RVRKLMKDKG 451 (519)
Q Consensus 421 ~~~~~~L~~~~~~~g~~~~A~-~~~~~m~~~g 451 (519)
..++..+..++...++.+++. ..++.|...|
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888888888888887777 5666665554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=2.2e-05 Score=62.56 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
.|..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...++...
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333334444444444443333321 1123333333344444444444444444333
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=1.1e-05 Score=74.38 Aligned_cols=189 Identities=6% Similarity=-0.022 Sum_probs=111.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS 279 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (519)
+...+..+...+.+.|++++|...|++..... +-+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666677777777777777777776643 2256667777777777777777777777776653 445667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 044422 280 MYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEG 356 (519)
Q Consensus 280 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 356 (519)
+|...|++++|...|+...+- +...+...+....+ ..++ ..+..........+......+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 777778888887777765431 11111111111111 1111 122223333344444443333 3332 6888888
Q ss_pred HHHHHHHHHcCCCcCHHH-HHHHHHHHHHc-CCHHHHHHHHHhC
Q 044422 357 KVYFDSMAKHGLKPELDH-YSCVVDLLGRA-GLLEEARDFIKQM 398 (519)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~~ 398 (519)
.+.++...+. .|+... ...+-..+.+. +.+++|.++|...
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877763 455433 33344444444 6788899999877
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.18 E-value=2.4e-05 Score=61.95 Aligned_cols=62 Identities=6% Similarity=-0.094 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
..|..+..++...|++++|...+++..... +.+...+..+...+...|++++|...++...+
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 334444444444444444444444443321 12233344444444444444444444444443
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=0.00084 Score=62.90 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=153.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-C-
Q 044422 209 AAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC-G- 285 (519)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~- 285 (519)
....+.+..++|+++++++.... +-+...|+.--..+...| .++++..+++.+.... +-+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33344455678888888887754 224455666666666677 5888888888888765 45666776666666665 5
Q ss_pred CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--
Q 044422 286 NVEEAVYVFNNMHGK---DIVSWNSMIAGYAQHGLAV--------RAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL-- 352 (519)
Q Consensus 286 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-- 352 (519)
++++++++++.+.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 778888888888764 4556665555555555555 899999999887544 77788888777777776
Q ss_pred -----HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHhCCCCCCHHHH
Q 044422 353 -----VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL--------------------EEARDFIKQMPIYPNAVIW 407 (519)
Q Consensus 353 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~p~~~~~ 407 (519)
++++.+.+++..... +-|...|+-+-..+.+.|+. ....++..++....+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 293 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL---- 293 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC----
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc----
Confidence 688888888888753 34777787777667766653 223333333310000
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 408 EAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.....+.++.+...|+..|...|+.++|.++++.+.+.
T Consensus 294 -----~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 -----PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -----CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00123466778888999999999999999999998643
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.17 E-value=1.4e-05 Score=65.79 Aligned_cols=92 Identities=13% Similarity=-0.053 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
.+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..|++..... +-+...|..+..++..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 34444444444444444444444433 1233344444444444444444444444444322 1123334444444444
Q ss_pred cCCchHHHHHHHHHHH
Q 044422 249 SGALGQGRSAHCQTIR 264 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~ 264 (519)
.|++++|...|+...+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.15 E-value=6.7e-05 Score=68.00 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=56.2
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----hhHHHHHHHHHHHcCCh
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-D----IVSWNSMIAGYAQHGLA 318 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 318 (519)
..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. + ...+..+-.++.+.|++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 33444444444444444443322 22223333344555555555555555544331 1 12344455555566666
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 319 VRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666665553222132 11233334445556666666666666655
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.14 E-value=2.9e-05 Score=63.15 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=71.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
.+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++. +.++|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p 83 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYG---------------ALMDI 83 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------HhcCC
Confidence 44455566777788888888888877643 336667777788888888888888776643 56677
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++.++..+..+|...|++++|.+.|++..+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888888888888888888888877664
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4e-05 Score=60.70 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=57.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEP 418 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~ 418 (519)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++. ++++|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------l~~~p 69 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA---------------IEKDP 69 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHhCC
Confidence 34444555566666666666666665532 224556666666666666666666655432 44556
Q ss_pred CCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 419 ECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 419 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++.+|..+..+|...|++++|...|++..+.
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 66666666666666777777776666665543
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=3.1e-05 Score=65.58 Aligned_cols=115 Identities=7% Similarity=0.036 Sum_probs=60.5
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH-HHHcCCh--HHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAG-YAQHGLA--VRAI 322 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~~A~ 322 (519)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 445555555555554443 33445555555555555555555555554432 244455555555 5556665 6666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 323 DLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
..+++..+.. +-+...+..+...+...|++++|...+++..+
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666665542 12344555555566666666666666666655
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.07 E-value=4.9e-05 Score=72.03 Aligned_cols=120 Identities=6% Similarity=-0.066 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--------------DFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
...|..+...+.+.|++++|+..|++......... ...|..+..++.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455555556666666666666655554321110 2344444444444455555544444444432
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHH
Q 044422 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRA 321 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 321 (519)
+.+...+..+..+|...|++++|...|++..+ .+...+..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444444444444444443321 1233344444444444444444
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.06 E-value=2.3e-05 Score=66.40 Aligned_cols=114 Identities=11% Similarity=-0.049 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHH-HHhcCCh--HHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAA-FAQEWQV--DMCLE 222 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~-~~~~~~~--~~a~~ 222 (519)
|+++.|...+....+.. +.+...+..+...|...|++++|...|++.. +.+...|..+..+ +...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44444444444444332 2233444444444444444444444444433 1233334444444 4444444 44554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 223 LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.|++..... +-+...+..+...+...|++++|...++.+.+
T Consensus 103 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444432 12233444444444444555555444444444
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.06 E-value=0.00014 Score=65.99 Aligned_cols=181 Identities=7% Similarity=-0.054 Sum_probs=108.4
Q ss_pred cCHHHHHHHHHHHhHCCCCCCHHHHHHHH-------HHHhcCCChhhHHHHHHHHHHhCCCChH----------------
Q 044422 114 VDVEKLISMHHDLHRERLKVDASFLSTAV-------TSCGSTRNIRGGAPYQCLAIRTGFIANV---------------- 170 (519)
Q Consensus 114 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~---------------- 170 (519)
.+...|.+.|.+..+... -....|..++ ..+.+.++...+...+..-. ++.|+.
T Consensus 20 ~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccccc
Confidence 489999999999987642 2455666662 33333333333333333322 222221
Q ss_pred ------HHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH
Q 044422 171 ------YVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--DFTFT 240 (519)
Q Consensus 171 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~ 240 (519)
..+-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 2233456677778888888888888863 433355556667788888888888887554321 121 23566
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 241 SILSACTGSGALGQGRSAHCQTIRMGFFS--YIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
.+..++...|++++|...|++.......| ..........++.+.|+.++|..+|+++.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777888888888777776433213 23344555556666666666666666554
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=7.1e-05 Score=60.05 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 044422 335 PDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL 414 (519)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~ 414 (519)
.+...+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|...+++. +
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l 70 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA---------------L 70 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------H
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------H
Confidence 355667777777778888888888888777643 335667777888888888888888766543 4
Q ss_pred hcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 415 LLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 415 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
.++|.++.++..+..+|...|++++|...|++..+.
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 566777777888888888888888888888887654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.03 E-value=1.1e-05 Score=69.92 Aligned_cols=121 Identities=6% Similarity=-0.010 Sum_probs=58.6
Q ss_pred HHHHHHhCCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--------------HH
Q 044422 176 LITLYSKCRVIIDAYKVFEEMPV---RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLE-PN--------------DF 237 (519)
Q Consensus 176 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~~ 237 (519)
.+......|+++.+.+.|+.-.. .....+..+...+...|++++|+..|++....... |+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34444555666666666654332 23445666677777777777777777777653211 10 14
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNM 297 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 297 (519)
.+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44455555555555555555555555442 333444445555555555555555555443
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=4.3e-05 Score=58.55 Aligned_cols=98 Identities=12% Similarity=-0.063 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC
Q 044422 338 ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLE 417 (519)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (519)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++. ++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------~~~~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV---------------INVI 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHTS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhC
Confidence 345566667777888888888888877643 335667777888888888888888877654 3455
Q ss_pred CC--CchhHHHHHHHHhcc-CCHHHHHHHHHHHHHCC
Q 044422 418 PE--CAATHVQLANLYAGV-RCWDQAARVRKLMKDKG 451 (519)
Q Consensus 418 ~~--~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~~g 451 (519)
|. +..++..+..+|... |++++|.+.+++..+..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 66 667777788888899 99999999888887664
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.02 E-value=5.6e-05 Score=63.09 Aligned_cols=93 Identities=11% Similarity=-0.025 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDL 381 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 381 (519)
...|..+...+.+.|++++|...|++..+.. +-+...|..+..++...|++++|...+++..+.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666666677777777666666542 2245556666666666666666666666666543 2235556666666
Q ss_pred HHHcCCHHHHHHHHH
Q 044422 382 LGRAGLLEEARDFIK 396 (519)
Q Consensus 382 ~~~~g~~~~A~~~~~ 396 (519)
|...|++++|...|+
T Consensus 89 ~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 89 RFDMADYKGAKEAYE 103 (164)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHH
Confidence 666666666666555
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=0.00019 Score=55.32 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 044422 303 VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLL 382 (519)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (519)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 455566666777777777777777766542 2255566666667777777777777777776643 23456666777777
Q ss_pred HHcCCHHHHHHHHHhC
Q 044422 383 GRAGLLEEARDFIKQM 398 (519)
Q Consensus 383 ~~~g~~~~A~~~~~~~ 398 (519)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 7777777777776654
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.01 E-value=0.0018 Score=60.66 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CHHHHHHHHccCC---CCChhHHHHHHHHHHhc-C-ChHHHHHHHH
Q 044422 152 RGGAPYQCLAIRTGFIANVYVGSSLITLYSKCR-VIIDAYKVFEEMP---VRNVVSWTAIIAAFAQE-W-QVDMCLELYR 225 (519)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-~-~~~~a~~~~~ 225 (519)
++|.++++.++... +-+..+|+.--..+...| ++++++.+++.+. ..+..+|+.-.-++.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 35666666665553 223344555555555555 3666666666654 23444555554444444 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCch--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 044422 226 MMRNSMLEPNDFTFTSILSACTGSGALG--------QGRSAHCQTIRMGFFSYIQVANSLISMYCKCG 285 (519)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 285 (519)
++.+.. +-|...|+.-.-.+.+.|.++ ++.+.++.+.+.. +.|...|+-....+.+.+
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 665543 224445544444444433333 5555555555543 334444544444444444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=0.00015 Score=55.99 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=7.9
Q ss_pred HHHHHHHccCCchHHHHHHHH
Q 044422 241 SILSACTGSGALGQGRSAHCQ 261 (519)
Q Consensus 241 ~ll~~~~~~g~~~~a~~~~~~ 261 (519)
.+..++...|++++|...++.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00046 Score=67.62 Aligned_cols=163 Identities=9% Similarity=-0.023 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHH
Q 044422 274 ANSLISMYCKCGNVEEAVYVFNNMHG-----KDI----VSWNSMIAGYAQHGLAVRAIDLFEEMMK----QRVKPD-AIT 339 (519)
Q Consensus 274 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t 339 (519)
+..+...|.+.|++++|.+.+..+.+ ++. ...+.+-..+...|+.++|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777776665542 111 1222333334456778888888776653 233333 456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CCC--c-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHH
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAKH--GLK--P-ELDHYSCVVDLLGRAGLLEEARDFIKQMP-----IYPNAVIWEA 409 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ 409 (519)
+..+...+...|++++|..+++.+... +.. + ....+..++..|...|++++|..++++.. +..+...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--- 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT--- 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH---
Confidence 777888889999999999998887632 211 1 24577888899999999999999887651 0001000
Q ss_pred HHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 410 AESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-...+..++..+...|++++|...|.+..+
T Consensus 215 ----------~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 ----------VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp ----------HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 013556678888889999999888777643
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.96 E-value=0.00017 Score=60.14 Aligned_cols=97 Identities=8% Similarity=-0.047 Sum_probs=85.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 269 SYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVIS 345 (519)
Q Consensus 269 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 345 (519)
.+...+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888999999999999999999998764 377889999999999999999999999998864 235778889999
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 044422 346 SCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~m~~~ 366 (519)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999863
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=5.2e-05 Score=59.72 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=73.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC
Q 044422 340 FLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPE 419 (519)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (519)
+..+...+.+.|++++|...+++..+.. +-+...|..+..++...|++++|...+++ +++++|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~---------------al~l~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNH---------------ARMLDPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHhCCC
Confidence 3445566778888888888888888743 33677778888888888888888887663 4677788
Q ss_pred CchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 420 CAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 420 ~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
++.++..|..+|...|++++|...+++..+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888899999999999888887654
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.91 E-value=0.00012 Score=59.97 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRM 226 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~ 226 (519)
..+..++...|++++|+..|++
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333333
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00038 Score=56.32 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=60.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 301 DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4455666666666677777777777766653 344 4556666666667777777777777766532 22455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.+..+|...|++++|...+++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 6667777777777777666543
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00019 Score=56.67 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
|..+..++...|++++|...|++.
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333333333444444444444333
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00022 Score=57.75 Aligned_cols=99 Identities=5% Similarity=-0.173 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE----LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAE 411 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~ 411 (519)
+...+..+...+...|+++.|...|++..+. .|+ ...+..+...|...|++++|...+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------- 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------------- 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH-------------
Confidence 5667888888999999999999999999874 465 678888999999999999999988754
Q ss_pred HhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 412 SRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 412 ~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
+...|.++.++..+..+|...|++++|...|++..+..
T Consensus 92 --~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 92 --IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45577778888889999999999999999999987753
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=0.00014 Score=72.06 Aligned_cols=131 Identities=11% Similarity=0.020 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKP--------------DAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--------------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
.|..+...+.+.|++++|...|++..+..... ....|..+..++.+.|++++|...+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 34444445555555555555555554421110 14677778888888999999999999888753 3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHH-HHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAAR-VRKLMK 448 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~-~~~~m~ 448 (519)
.+...|..+..+|...|++++|...|++. ++++|.+..++..+..++.+.|++++|.+ .++.|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~a---------------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKV---------------LEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999998877644 56777888888889999999998888774 556654
Q ss_pred HC
Q 044422 449 DK 450 (519)
Q Consensus 449 ~~ 450 (519)
..
T Consensus 414 ~k 415 (457)
T 1kt0_A 414 KK 415 (457)
T ss_dssp --
T ss_pred hh
Confidence 43
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.86 E-value=9.1e-05 Score=60.99 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc-CHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRV-KPD----AITFLGVISSCRHGGLVEEGKVYFDSMAKH----GLKP-ELD 373 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 373 (519)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666666777777777777766554211 011 135666777788888888888888877642 1111 144
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMP----IYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
.+..+...+...|++++|.+.+++.- ...+. +.....+..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67778888999999999999887651 00111 11134677789999999999999999998765
Q ss_pred C
Q 044422 450 K 450 (519)
Q Consensus 450 ~ 450 (519)
.
T Consensus 158 ~ 158 (164)
T 3ro3_A 158 I 158 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.85 E-value=0.00018 Score=58.39 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=34.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 207 IIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3334444444444444444443322 1233333344444444444444444444444332 2223333333333444444
Q ss_pred HHHHHHHHH
Q 044422 287 VEEAVYVFN 295 (519)
Q Consensus 287 ~~~a~~~~~ 295 (519)
+++|...|+
T Consensus 102 ~~~A~~~~~ 110 (142)
T 2xcb_A 102 LDGAESGFY 110 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444433333
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00041 Score=67.99 Aligned_cols=25 Identities=8% Similarity=-0.107 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
+..+...|...|++++|.+.+....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555666666666666666665553
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.84 E-value=0.00013 Score=55.80 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILSACT 247 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~ 247 (519)
+..+...+.+.|++++|...|++.. ..+...|..+..++...|++++|...|++..+.. +. +...+..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 3334444444444444444444332 1233334444444444444444444444443322 11 2333444444444
Q ss_pred cc-CCchHHHHHHHHHH
Q 044422 248 GS-GALGQGRSAHCQTI 263 (519)
Q Consensus 248 ~~-g~~~~a~~~~~~~~ 263 (519)
.. |++++|.+.+....
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444443
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00027 Score=56.10 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=9.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~ 329 (519)
+..++...|++++|++.|++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444433
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00021 Score=56.77 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQR--VKPD----AITFLGV 343 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~t~~~l 343 (519)
.+..+...+.+.|++++|+..|++..+ .+...|+.+..+|.+.|++++|+..+++..+.. ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555554432 244555556666666666666666666554421 1111 1245555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCHHHH
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPELDHY 375 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 375 (519)
..++...|++++|.+.|++..+. .|+....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 55666667777777777666652 3454443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.83 E-value=0.00033 Score=55.99 Aligned_cols=61 Identities=5% Similarity=-0.134 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
.|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333444444444444444444333322 11233333333334444444444444433333
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.78 E-value=0.00016 Score=57.12 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..+..++...|++++|...|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.77 E-value=0.00016 Score=57.02 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCC--C-C-------hhHHH
Q 044422 136 SFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPV--R-N-------VVSWT 205 (519)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~-------~~~~~ 205 (519)
..+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...|++... | + ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455555556666666666666665543 33444555555555555666655555555431 1 1 33444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 044422 206 AIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 206 ~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
.+..++...|++++|...|++...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.74 E-value=7.9e-05 Score=74.22 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=71.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE 390 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (519)
.+.+.|++++|.+.+++..+.. +-+...+..+..++.+.|++++|...+++..+.. +-+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455667777777777666542 2245666666677777777777777777776642 2345566667777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH--HhccCCHHHHHHHHH
Q 044422 391 ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL--YAGVRCWDQAARVRK 445 (519)
Q Consensus 391 A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~g~~~~A~~~~~ 445 (519)
|.+.+++. ++++|.+..++..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~a---------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETV---------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH---------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHH---------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77666533 44556666666666655 666677777777666
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.73 E-value=0.00014 Score=59.74 Aligned_cols=24 Identities=0% Similarity=-0.254 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
+..+...+...|++++|...+++.
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~a 35 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQR 35 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344444444445555555544444
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.73 E-value=0.0077 Score=56.05 Aligned_cols=180 Identities=8% Similarity=0.009 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHH
Q 044422 253 GQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG--NVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGL-AVRAIDLFE 326 (519)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~ 326 (519)
+++..+++.+.... +-+..+|+.-.-.+.+.+ .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444555444432 334444444444444444 25556665555543 344555555555555555 466666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc-------
Q 044422 327 EMMKQRVKPDAITFLGVISSCRHG--------------GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA------- 385 (519)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------- 385 (519)
++.+..+. |...|+.....+.+. +.++++.+.+....... +-|...|+-+--.+.+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc
Confidence 66665433 445554444433332 34666777777766532 33555555443333333
Q ss_pred ----CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHH---HHHhccCCHHHHHHHHHHHHHC
Q 044422 386 ----GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLA---NLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 386 ----g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.++++.+.++ ++++++|++...+..++ .+....|..+++...+.++++.
T Consensus 248 ~~~~~~l~~el~~~~---------------elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCK---------------ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---------------HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22344444443 33455555543333322 2333467777888888877653
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=4e-05 Score=59.88 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHH
Q 044422 350 GGLVEEGKVYFDSMAKHG--LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQL 427 (519)
Q Consensus 350 ~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L 427 (519)
.|++++|...|++..+.+ -+-+...+..+..+|...|++++|...+++. +++.|.++.++..+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------l~~~p~~~~~~~~l 67 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG---------------VKQFPNHQALRVFY 67 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCchHHHHHH
Confidence 455666666666666532 1223445566666666777777776666533 45556666666667
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC
Q 044422 428 ANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+|...|++++|...+++..+.
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776666554
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.70 E-value=0.00024 Score=55.82 Aligned_cols=92 Identities=9% Similarity=-0.077 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK 283 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (519)
+..+...+.+.|++++|...|++..+.. +-+...+..+..++...|++++|...++...+.. +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334445555555555555555554432 2234445555555555555555555555555443 2334444445555555
Q ss_pred cCCHHHHHHHHHhc
Q 044422 284 CGNVEEAVYVFNNM 297 (519)
Q Consensus 284 ~~~~~~a~~~~~~~ 297 (519)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.67 E-value=0.00057 Score=53.91 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=49.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKHGLKPEL---DHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC 420 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 420 (519)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...+++. +...|++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~---------------~~~~p~~ 72 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDL---------------VSRYPTH 72 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH---------------HHHCCCC
Confidence 334455566666666666555422 1111 34455556666666666666655543 2333444
Q ss_pred ---chhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 421 ---AATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 421 ---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.++..++.+|...|++++|...|++..+.
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555666666666666666666666554
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.00043 Score=56.60 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=72.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCcC-------------HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044422 343 VISSCRHGGLVEEGKVYFDSMAKHGLKPE-------------LDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEA 409 (519)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 409 (519)
....+.+.|++++|...|++..+.. |+ ...|..+..++.+.|++++|...+++.- ..
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL--------~l 86 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL--------HY 86 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------Hh
Confidence 3344555566666666666655421 22 2388889999999999999999887551 12
Q ss_pred HHHhhhcCCCCchhH----HHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 410 AESRLLLEPECAATH----VQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 410 ~~~~~~~~~~~~~~~----~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+.+..+++|++..+| .....++...|++++|+..|++..+.
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344556699999999 99999999999999999999998654
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.63 E-value=0.0092 Score=55.53 Aligned_cols=247 Identities=9% Similarity=0.024 Sum_probs=115.1
Q ss_pred cCCChh-hHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC----------HHHHHHHHccCC---CCChhHHHHHHHHHH
Q 044422 147 STRNIR-GGAPYQCLAIRTGFIANVYVGSSLITLYSKCRV----------IIDAYKVFEEMP---VRNVVSWTAIIAAFA 212 (519)
Q Consensus 147 ~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~---~~~~~~~~~li~~~~ 212 (519)
+.|.+. +|..+++.++... +-+..+|+.--..+...+. +++++.+++.+. +.+..+|+.-.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 444444 5666666666543 2222334433333322222 345555555543 234445555444444
Q ss_pred hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 044422 213 QEW--QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA-LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEE 289 (519)
Q Consensus 213 ~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 289 (519)
+.+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++.+.++.+.+.. +.|...|+-....+.+.+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 544 2556666666655543 2344455544444445554 255555555555543 3344444433333322210000
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHH
Q 044422 290 AVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG-----------GLVEEGKV 358 (519)
Q Consensus 290 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----------g~~~~a~~ 358 (519)
+ ++ .+-...+.++++++.+....... +-|...|+.+-..+.+. +.++++.+
T Consensus 198 ~---------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 198 S---------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred c---------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 0 00 00000033566777777666543 22555555444444433 45778888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHH-----HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHh
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLL-----GRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYA 432 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 432 (519)
.++++.+. .|+. .|..+-.++ ...|..+++... +.++.+++|.....|..|...+.
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~---------------l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQY---------------FSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHH---------------HHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHH---------------HHHHHHhCcchhhHHHHHHHHHH
Confidence 88888873 4554 333211111 122333333333 44556777777777766655443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.63 E-value=0.00036 Score=57.93 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 371 ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
+...|..+..+|.+.|++++|...++. ++.++|.++.+|..++.+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~---------------al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSE---------------VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH---------------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHH---------------HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 346788899999999999999987774 46778999999999999999999999999999998775
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.0004 Score=66.57 Aligned_cols=90 Identities=8% Similarity=-0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 044422 337 AITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL 416 (519)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (519)
...|..+..++.+.|++++|...+++..+.. +-+...|..+..+|...|++++|.+.+++. +++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A---------------l~l 336 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKA---------------QEI 336 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHh
Confidence 3456666666777777777777777776532 224556666777777777777777665533 455
Q ss_pred CCCCchhHHHHHHHHhccCCHHHHHH
Q 044422 417 EPECAATHVQLANLYAGVRCWDQAAR 442 (519)
Q Consensus 417 ~~~~~~~~~~L~~~~~~~g~~~~A~~ 442 (519)
+|.+...+..|..++...++.+++.+
T Consensus 337 ~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 337 APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665544
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.57 E-value=0.00038 Score=69.29 Aligned_cols=114 Identities=10% Similarity=-0.041 Sum_probs=54.1
Q ss_pred HHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHH
Q 044422 180 YSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGR 256 (519)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 256 (519)
+.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555554433 2234455555555555555555555555555542 223445555555555556666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 044422 257 SAHCQTIRMGFFSYIQVANSLISM--YCKCGNVEEAVYVFN 295 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 295 (519)
+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555442 2222233333333 555566666666665
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00023 Score=67.37 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 271 IQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG 350 (519)
Q Consensus 271 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 350 (519)
...+..+...+.+.|++++|...|++..+-+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44566677777777888888887776543111110 1112223333322221 12677788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANL 430 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 430 (519)
|++++|...+++..+.. +.+...|..+..+|...|++++|...|++. ++++|.+..++..|...
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a---------------l~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA---------------QKYAPDDKAIRRELRAL 307 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT---------------TC---------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHHCCCCHHHHHHHHHH
Confidence 99999999999988753 336778888999999999999999988876 34455555566666666
Q ss_pred -HhccCCHHHHHHHHHHHHHC
Q 044422 431 -YAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 431 -~~~~g~~~~A~~~~~~m~~~ 450 (519)
....+..+.+...|+.|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 34456677888888887654
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.55 E-value=0.0021 Score=50.51 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=55.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC----HHHHHHHH
Q 044422 307 SMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA---ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE----LDHYSCVV 379 (519)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li 379 (519)
.+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++...+.. |+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445566677777777777776654211 12 355556666777777777777777776532 22 45566667
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 044422 380 DLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~~ 398 (519)
.++...|++++|...++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777776654
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.51 E-value=0.001 Score=65.99 Aligned_cols=133 Identities=12% Similarity=-0.044 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CCc-CHHHHH
Q 044422 311 GYAQHGLAVRAIDLFEEMMKQ---RVKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAK-----HG-LKP-ELDHYS 376 (519)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~~~ 376 (519)
.+...|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+ .| -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455778899998888876652 12232 45788888999999999999999888764 22 123 345688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhc-CCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLL-EPECAATHVQLANLYAGVRCWDQAARVRKLMKDKG 451 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g 451 (519)
.|...|...|++++|..++++.- ...++.+.. +|....+...|..++...|++++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al--------~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY--------AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998761 111111111 11222355678899999999999999999998754
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.49 E-value=0.0011 Score=65.43 Aligned_cols=121 Identities=4% Similarity=-0.141 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 201 VVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPN--------------DFTFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 201 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44666677777777888888877777765321110 3445555555555555555555555555543
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 044422 267 FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG---KDIVSWNSMIAGYAQHGLAVRAI 322 (519)
Q Consensus 267 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (519)
+.+...|..+..+|...|++++|...|++..+ .+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554432 12334444444444444444433
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.45 E-value=0.00085 Score=64.27 Aligned_cols=117 Identities=9% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCC-------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPV-------------------RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSML 232 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 232 (519)
.+..+...+.+.|++++|+..|++... .+...|+.+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 455666667777777777776665432 123455555666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 044422 233 EPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEA 290 (519)
Q Consensus 233 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 290 (519)
+-+...+..+..++...|++++|...++...+.. +.+...+..+..++.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234555555666666666666666666555543 23444445555555444444444
No 189
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.43 E-value=0.017 Score=57.43 Aligned_cols=202 Identities=8% Similarity=0.035 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHH-HHHHc
Q 044422 116 VEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDA-YKVFE 194 (519)
Q Consensus 116 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 194 (519)
.+++..+|+++... .+.+...|...+..+.+.|+++.|..+++..+.. +.+...+.. |+...+.++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHH
Confidence 45667788887764 3445777777777788888899999999988887 333333322 2221111111 11111
Q ss_pred cCC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccCCchHHHHHHH
Q 044422 195 EMP------------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTS--ILSACTGSGALGQGRSAHC 260 (519)
Q Consensus 195 ~m~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~ 260 (519)
... ......|...+....+.++.+.|..+|++. ... ..+...|.. .+.... .++.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHH
Confidence 110 001133444455555555666666666665 211 122223321 111111 224666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044422 261 QTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMM 329 (519)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (519)
...+.- +.+...+...++...+.|+.+.|..+|+.+.+ ....|...+..=...|+.+.+..+++++.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555532 22233344445555555556666666655532 33444444444344455555544444443
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.40 E-value=0.00027 Score=55.03 Aligned_cols=84 Identities=12% Similarity=-0.071 Sum_probs=53.2
Q ss_pred cCCChhhHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHH
Q 044422 147 STRNIRGGAPYQCLAIRTG--FIANVYVGSSLITLYSKCRVIIDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
..|++++|...|+..++.+ -+.+..++..+..+|.+.|++++|+..|++.. +.+...+..+..++.+.|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3467777777777776653 12244567777777777777777777777664 234566677777777777777777
Q ss_pred HHHHHHHHC
Q 044422 222 ELYRMMRNS 230 (519)
Q Consensus 222 ~~~~~m~~~ 230 (519)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00092 Score=63.19 Aligned_cols=142 Identities=8% Similarity=-0.056 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPV--RNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTG 248 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 248 (519)
..+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 3455666666677777777776666442 22111 112222222222110 1256677777778
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH-HHHcCChHHHHHH
Q 044422 249 SGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---DIVSWNSMIAG-YAQHGLAVRAIDL 324 (519)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~-~~~~g~~~~A~~~ 324 (519)
.|++++|...++...+.. +.+...|..+..+|...|++++|...|+...+- +...+..+... ....+..+++...
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777654 445677777777777777777777777777542 23344444333 2233445556666
Q ss_pred HHHHHH
Q 044422 325 FEEMMK 330 (519)
Q Consensus 325 ~~~m~~ 330 (519)
|..|..
T Consensus 322 ~~~~l~ 327 (338)
T 2if4_A 322 YKGIFK 327 (338)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 666654
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.37 E-value=0.0066 Score=61.59 Aligned_cols=170 Identities=10% Similarity=0.047 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHHHcC--
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN----------VEEAVYVFNNMHG---KDIVSWNSMIAGYAQHG-- 316 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-- 316 (519)
.++|.+.++.+.+.. +-+..+|+.--.++.+.|+ ++++++.++.+.+ .+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 345566666666554 3344455544444444444 7777777777654 35667777777777788
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc----------
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG-LVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA---------- 385 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------- 385 (519)
+++++++.++++.+...+ +...|+.-..++.+.| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 669999999999887544 6777877777777778 8888899988888754 33677777766666653
Q ss_pred ----CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHH
Q 044422 386 ----GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQ 439 (519)
Q Consensus 386 ----g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 439 (519)
+.++++. ..+.+++.++|.+..+|..+...+.+.+++++
T Consensus 202 ~~~~~~~~eel---------------~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKEL---------------ELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHH---------------HHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHH---------------HHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2233333 34456788999999999999999999888554
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.33 E-value=0.0017 Score=53.69 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhC-------C----------CChHHHHHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 135 ASFLSTAVTSCGSTRNIRGGAPYQCLAIRTG-------F----------IANVYVGSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
...+......+.+.|+++.|...|...++.- - +.+..+|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445666677778888888888888776640 0 1122344444444444455554444444432
Q ss_pred ---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 198 ---VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 198 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
+.+...|..+..+|...|++++|...|++...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 22333444444444444444444444444443
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.25 E-value=0.00094 Score=66.22 Aligned_cols=62 Identities=5% Similarity=-0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK-----QRV-KPD-AITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+++.|...|...|++++|..++++..+ .|. .|+ ..+.+.+-.++...+.+++|..++..+++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554432 121 111 12233444445555666666666666553
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.18 E-value=0.0051 Score=50.20 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----C-----HHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLE-P-----N-----DFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-----~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
+......+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|...++...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566666677777766666553211 0 1 22556666666666666666666655554
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.17 E-value=0.0075 Score=48.33 Aligned_cols=109 Identities=9% Similarity=-0.063 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCCHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSK----CRVIIDAY 190 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 190 (519)
+.++|++.|++..+.| .|+.. +-..|...+.++.|...|....+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 6777788887777776 22322 4455555566777777777777665 45556666666665 56666666
Q ss_pred HHHccCC-CCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 044422 191 KVFEEMP-VRNVVSWTAIIAAFAQ----EWQVDMCLELYRMMRNSM 231 (519)
Q Consensus 191 ~~~~~m~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 231 (519)
++|++.. ..++.++..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666554 2445555556666655 566666666666665554
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.12 E-value=0.0031 Score=48.52 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccC
Q 044422 356 GKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVR 435 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 435 (519)
+...+++..+.. +.+...+..+...|...|++++|...+++. +.++|.+..+|..+..+|...|
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAA---------------LDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHHCCCcHHHHHHHHHHHHHcC
Confidence 445555555432 234556666666777777777776665533 3455666666666777777777
Q ss_pred CHHHHHHHHHHHHHC
Q 044422 436 CWDQAARVRKLMKDK 450 (519)
Q Consensus 436 ~~~~A~~~~~~m~~~ 450 (519)
++++|...|++..+.
T Consensus 68 ~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 68 DRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777766543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0005 Score=52.49 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444443322 12333444444444444444444444444443
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.0023 Score=47.98 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
-+...+..+...|...|++++|...|++. ++++|.++.+|..+..+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEEL---------------VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677888999999999999999988754 677899999999999999999999999999998876
Q ss_pred C
Q 044422 450 K 450 (519)
Q Consensus 450 ~ 450 (519)
.
T Consensus 70 l 70 (100)
T 3ma5_A 70 V 70 (100)
T ss_dssp H
T ss_pred h
Confidence 4
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0007 Score=51.65 Aligned_cols=94 Identities=6% Similarity=0.034 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcC-------HHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPE-------LDH 374 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~ 374 (519)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4456667777888888888888888877653 235667777777888888888888888888763 344 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 375 YSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..+..++...|+.++|.+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 555666666666666555554444
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.0047 Score=44.81 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 339 TFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444555555555555555554432 2234444555555555555555555444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.95 E-value=0.0083 Score=43.44 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMY 281 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (519)
.|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444455555555555555555554432 2234444555555555555555555555554442 22333444443333
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.88 E-value=0.023 Score=45.44 Aligned_cols=108 Identities=9% Similarity=-0.016 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHH
Q 044422 216 QVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCK----CGNVEEAV 291 (519)
Q Consensus 216 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 291 (519)
++++|+..|++..+.| .|+.. |...|...+.+++|.+.|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 33333 4444555555555666666665543 33444444445544 44555555
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHC
Q 044422 292 YVFNNMHG-KDIVSWNSMIAGYAQ----HGLAVRAIDLFEEMMKQ 331 (519)
Q Consensus 292 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 331 (519)
+.|++..+ .++..+..|...|.. .++.++|...|++..+.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55544332 233444444444444 44444444444444444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.83 E-value=0.0066 Score=46.62 Aligned_cols=75 Identities=9% Similarity=-0.037 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 044422 220 CLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNN 296 (519)
Q Consensus 220 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 296 (519)
|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...|+.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444443332 2234444445555555555555555555544433 23344444455555555555555554443
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.77 E-value=0.0074 Score=58.80 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=87.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc---CCCc----CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh-h
Q 044422 344 ISSCRHGGLVEEGKVYFDSMAKH---GLKP----ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL-L 415 (519)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~-~ 415 (519)
+..+...|++++|..++++..+. -+.| ...+++.+...|...|++++|+.++++.- ...++.+ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L--------~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM--------EPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--------HhHHHHcCC
Confidence 44566778999999999888742 1222 34678889999999999999999998761 1111111 1
Q ss_pred cCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHH
Q 044422 416 LEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMK 495 (519)
Q Consensus 416 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 495 (519)
-+|.-..+++.|...|...|++++|..++++..+--.. ..+..||.+.+....+.+...+|+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 12223457888999999999999999999987543100 012257888888888887777765
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.62 E-value=0.01 Score=43.73 Aligned_cols=70 Identities=17% Similarity=0.036 Sum_probs=56.3
Q ss_pred CcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHH
Q 044422 369 KPELDHYSCVVDLLGRAGL---LEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
+.+...+..+..++...++ .++|..+++ ++++++|.++.+...|...+...|++++|+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~---------------~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLE---------------QALQLEPYNEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHH---------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH---------------HHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777777765544 566666554 5689999999999999999999999999999999
Q ss_pred HHHHCCCC
Q 044422 446 LMKDKGLK 453 (519)
Q Consensus 446 ~m~~~g~~ 453 (519)
++.+....
T Consensus 68 ~~l~~~p~ 75 (93)
T 3bee_A 68 LLLDSNDP 75 (93)
T ss_dssp HHHTCCCT
T ss_pred HHHhhCCC
Confidence 99987644
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.60 E-value=0.0024 Score=52.01 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=70.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHH---HHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhH
Q 044422 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLE---EARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 424 (519)
.+.+.+++|.+.++...+.. +-+...|..+..++...++++ +|++.+++. ...++++++++|++..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eA--------i~~le~AL~ldP~~~~A~ 83 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEA--------ITKFEEALLIDPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH--------HHHHHHHHHHCTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHH--------HHHHHHHHHhCcCcHHHH
Confidence 34566788888888888754 346777777777777776554 333333322 245567899999999999
Q ss_pred HHHHHHHhccC-----------CHHHHHHHHHHHHHCC
Q 044422 425 VQLANLYAGVR-----------CWDQAARVRKLMKDKG 451 (519)
Q Consensus 425 ~~L~~~~~~~g-----------~~~~A~~~~~~m~~~g 451 (519)
..|..+|...| ++++|++.|++..+..
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99999999875 8999999999998753
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.59 E-value=0.14 Score=51.85 Aligned_cols=164 Identities=6% Similarity=-0.027 Sum_probs=103.4
Q ss_pred HHHHHHHccCC---CCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C
Q 044422 187 IDAYKVFEEMP---VRNVVSWTAIIAAFAQEWQ----------VDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG--A 251 (519)
Q Consensus 187 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 251 (519)
++|++.++++. +.+..+|+.--.++...++ ++++++.++++.+.. +-+..+|..-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 34455555544 1233344444444444444 677777777776654 235566666666666777 5
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHc------------
Q 044422 252 LGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCG-NVEEAVYVFNNMHGK---DIVSWNSMIAGYAQH------------ 315 (519)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~------------ 315 (519)
++++.+.++.+.+.. +-+...|+--..++.+.| .++++.+.++++.+. |..+|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 577777777777765 456666766666666777 778888888877653 556777666665553
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044422 316 --GLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLV 353 (519)
Q Consensus 316 --g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 353 (519)
+.++++++.+++..... +-|...|..+-..+.+.++.
T Consensus 204 ~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688888888877653 22566777766666666653
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.13 Score=54.60 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=99.7
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 209 AAFAQEWQVDMCLE-LYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 209 ~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34455777877766 4411 1 1122236677777778888877765521 11 113345678899
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 044422 288 EEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHG 367 (519)
Q Consensus 288 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 367 (519)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99998887664 567899999999999999999999988742 3444555555777776666655555544
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 368 LKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 368 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
. ++.-..+|.+.|++++|.+++.+++
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 3334445666777777777666653
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.39 E-value=0.01 Score=57.69 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHH---cCCCc----CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhh-cCCCC
Q 044422 349 HGGLVEEGKVYFDSMAK---HGLKP----ELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLL-LEPEC 420 (519)
Q Consensus 349 ~~g~~~~a~~~~~~m~~---~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~ 420 (519)
..|++++|..++++..+ .-+.| ...+++.|..+|...|++++|..++++.- ...++.+. -+|+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL--------~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII--------KPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------HHHHHHcCCCChHH
Confidence 45788888888888764 11222 24678899999999999999999998761 11111111 12233
Q ss_pred chhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 421 AATHVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 421 ~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
..+|+.|+..|...|++++|..++++..+
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45788899999999999999999998754
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.34 E-value=0.02 Score=42.74 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHH
Q 044422 202 VSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQT 262 (519)
Q Consensus 202 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 262 (519)
..|..+..+|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444332 112233444444444444444444444433
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.19 E-value=0.0053 Score=50.03 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHccCC---CCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044422 188 DAYKVFEEMP---VRNVVSWTAIIAAFAQE-----------WQVDMCLELYRMMRNSMLEPNDFTFTSILS 244 (519)
Q Consensus 188 ~A~~~~~~m~---~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 244 (519)
+|+..|++.. +.+..+|+.+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4555544443 12334455555555444 4677777777777663 565555544443
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.12 E-value=0.35 Score=51.17 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=24.4
Q ss_pred HhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 044422 181 SKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 227 (519)
...|+++.|.++.+.+. +...|..+...+.+.++++.|.++|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555554442 3345555555555555555555555554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.75 E-value=0.072 Score=51.78 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CCc-CHHH
Q 044422 309 IAGYAQHGLAVRAIDLFEEMMKQR---VKPD----AITFLGVISSCRHGGLVEEGKVYFDSMAK-----HG-LKP-ELDH 374 (519)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~ 374 (519)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|..++++..+ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999998887642 3333 45788899999999999999999998774 22 123 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 375 YSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
++.|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888999999999999999999876
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.74 E-value=0.021 Score=55.53 Aligned_cols=61 Identities=8% Similarity=-0.098 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQ-----R-VKPD-AITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
+++.+..+|...|++++|..++++..+. | -.|+ ..+++.|...|...|++++|..++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4455555555555555555555544321 1 1111 2345555555555666666555555544
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.60 E-value=0.15 Score=40.98 Aligned_cols=82 Identities=12% Similarity=-0.018 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC-C-CCchhHHHH
Q 044422 353 VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAG---LLEEARDFIKQMPIYPNAVIWEAAESRLLLE-P-ECAATHVQL 427 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~-~-~~~~~~~~L 427 (519)
...+.+-|.+..+.|. ++..+...+..++++++ +++++..++++. ++.+ | .+...+..|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l---------------l~~~~p~~~rd~lY~L 77 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL---------------LPKGSKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---------------HHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCCccchHHHHHHH
Confidence 3444445555444442 55555555666666666 444555555543 1112 2 123345556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC
Q 044422 428 ANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..+|.+.|++++|.+.++...+.
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc
Confidence 77777777777777777777663
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.51 E-value=0.18 Score=47.27 Aligned_cols=64 Identities=5% Similarity=-0.060 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 200 NVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 200 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++.....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444455555555555554432 44444444444444555555555555444443
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=1.1 Score=37.04 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044422 279 SMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKV 358 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 358 (519)
+...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.. | |..+.-.|...|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888888776 467789999999999999999999988863 2 3444555666788777666
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 359 YFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
+-+.....| -++.-...+...|+++++.+++.+.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 655555544 15556666777899999999998886
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.23 E-value=0.073 Score=39.11 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCchHHHHHHHHHHHcC
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDF-TFTSILSACTGSGALGQGRSAHCQTIRMG 266 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 266 (519)
...+.+.|++++|...|++..+.. +.+.. .+..+..++...|++++|...++...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566667777777776666543 22344 56666666666777777777776666653
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.15 E-value=0.76 Score=35.74 Aligned_cols=83 Identities=10% Similarity=-0.064 Sum_probs=58.3
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 044422 184 RVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTI 263 (519)
Q Consensus 184 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 263 (519)
|++......+-.+. .+....+..++.+..+|+-+.-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444433333332 2344566777888888888888888888544 246777788888889999999999999888888
Q ss_pred HcCCC
Q 044422 264 RMGFF 268 (519)
Q Consensus 264 ~~~~~ 268 (519)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88854
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.96 E-value=0.34 Score=45.38 Aligned_cols=73 Identities=5% Similarity=0.018 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 044422 300 KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYS 376 (519)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 376 (519)
.+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|...+++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 355666666666666677777777777777654 66666666666677777777777777777763 46665554
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.78 E-value=1.1 Score=34.87 Aligned_cols=140 Identities=12% Similarity=0.021 Sum_probs=82.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 044422 212 AQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAV 291 (519)
Q Consensus 212 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 291 (519)
.-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. .|. ..+|++..+.
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3456666666666665442 23444555555544444444444444433221 221 2344555555
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 044422 292 YVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 292 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 369 (519)
..+-.+.. +..-.+..++.+...|+-+.-.+++.++.. +.+|+....-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55444433 333455666777778888888888777543 34667777777788888888888888888888877754
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.75 E-value=0.17 Score=37.05 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=40.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 308 MIAGYAQHGLAVRAIDLFEEMMKQRVKPDAI-TFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 308 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
....+.+.|++++|...+++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445667788888888888777653 22445 6677777777888888888888887764
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.70 E-value=0.26 Score=39.58 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHHcCCHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG---LVEEGKVYFDSMAKHGLKP--ELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 392 (519)
...+.+.|.+..+.|. ++..+...+..++++.+ +++++..+++...+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566677777766654 67777777888888888 6779999999998754 34 3555666788889999999999
Q ss_pred HHHHhC
Q 044422 393 DFIKQM 398 (519)
Q Consensus 393 ~~~~~~ 398 (519)
++++.+
T Consensus 92 ~y~~~l 97 (152)
T 1pc2_A 92 KYVRGL 97 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.01 E-value=0.43 Score=35.55 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 336 DAITFLGVISSCRHGGLVEEGKVYFDSMAKH------GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 336 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+..-+..|...+...|+++.|...++...+. .-.+....+..+..+|.+.|++++|..++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4445667777888888899888888887642 11245677889999999999999999988765
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.32 E-value=0.0016 Score=62.34 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044422 170 VYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGS 249 (519)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 249 (519)
+.+|+.|..+..+.+++.+|++.|=+ ..|+..|..+|.+..+.|.+++-+..+...++..-.|... +.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhh
Confidence 34666777777777777666655532 3455667777777777777777777775555443333333 4677777777
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhHH
Q 044422 250 GALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG------------------------KDIVSW 305 (519)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~ 305 (519)
++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.||
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 77666544331 24444455666667777777777766665542 367889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHc
Q 044422 306 NSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRA 385 (519)
Q Consensus 306 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (519)
..+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++...+++.-... -.....+|+-|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 999999999988877765544433 22221 234566677788888777777665532 134667778777777765
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHH
Q 044422 386 GLLEEARDFIKQM----PIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAAR 442 (519)
Q Consensus 386 g~~~~A~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 442 (519)
+.++.++.++.. .+..-.... .....|..|+-.|+.-..|+.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKvirac-----------E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAA-----------EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHH-----------TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHH-----------HHHhhHHHHHHHHhcchhHHHHHH
Confidence 355555554433 211111100 123455556666776677766654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.90 E-value=0.88 Score=33.79 Aligned_cols=63 Identities=6% Similarity=-0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHc
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNS------MLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRM 265 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 265 (519)
.+..|...+.+.++++.|...|+...+. +-.+....+..|..++.+.|+++.|...++.+.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445555666666666666666555432 01223445556666666666666666666666554
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.74 E-value=0.72 Score=41.44 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHHc-----CCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCC-chh
Q 044422 353 VEEGKVYFDSMAKHGLKPE---LDHYSCVVDLLGRA-----GLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPEC-AAT 423 (519)
Q Consensus 353 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~ 423 (519)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++ +++++|.. ..+
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer---------------AL~LnP~~~id~ 241 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH---------------LTRYCSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH---------------HHHHCCTTCSHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH---------------HHHhCCCCCchH
Confidence 5667777777777 4566 66888999999984 999999998874 47888864 888
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCC
Q 044422 424 HVQLANLYAGV-RCWDQAARVRKLMKDKGLKT 454 (519)
Q Consensus 424 ~~~L~~~~~~~-g~~~~A~~~~~~m~~~g~~~ 454 (519)
+..+...++.. |++++|.+.+++........
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999995 99999999999999987663
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.47 E-value=0.85 Score=33.17 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
+...+...+.+.|++++|...|+++.+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333333444444444444444444443
No 230
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.00 E-value=2.5 Score=30.63 Aligned_cols=88 Identities=11% Similarity=-0.040 Sum_probs=67.4
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
...++|..|-+++...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888888877663 33344444567788999999999999999999999988755 48899999998888888
Q ss_pred HCCCCCCHHHHHH
Q 044422 229 NSMLEPNDFTFTS 241 (519)
Q Consensus 229 ~~g~~p~~~t~~~ 241 (519)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 777 666666643
No 231
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.87 E-value=2.7 Score=30.52 Aligned_cols=88 Identities=10% Similarity=-0.028 Sum_probs=66.8
Q ss_pred CChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044422 149 RNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 228 (519)
...++|..|-+++...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888888777663 33344444567788999999999999999999999988755 47888888888888887
Q ss_pred HCCCCCCHHHHHH
Q 044422 229 NSMLEPNDFTFTS 241 (519)
Q Consensus 229 ~~g~~p~~~t~~~ 241 (519)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 777 666666543
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.79 E-value=6 Score=32.52 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=89.4
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 044422 244 SACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 244 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|..... +..+.-.|.-.|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887655 4677899999999999999999999987764 3444445666778777776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 324 LFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 324 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
+-+.....|- ++.....+...|+++++.++|.+. |.-|.... .....|-.+.|.++.+.++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 6666555542 455555666789999998887554 32232211 1223567888888888875
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.68 E-value=1.7 Score=33.45 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=58.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCc--CHHHHHHHHHHHHHcCC
Q 044422 313 AQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEE---GKVYFDSMAKHGLKP--ELDHYSCVVDLLGRAGL 387 (519)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~ 387 (519)
.....+..+.+.|.+....|. |+..+-..+..++.+...... +..+++.+.+.+ .| .....-.|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 333445566666666655454 677776777778888877655 888888887754 23 33444557778999999
Q ss_pred HHHHHHHHHhC
Q 044422 388 LEEARDFIKQM 398 (519)
Q Consensus 388 ~~~A~~~~~~~ 398 (519)
+++|.++++.+
T Consensus 90 Y~~A~~~~~~l 100 (126)
T 1nzn_A 90 YEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.63 E-value=4.7 Score=31.02 Aligned_cols=89 Identities=10% Similarity=-0.079 Sum_probs=61.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhH
Q 044422 348 RHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEE---ARDFIKQMPIYPNAVIWEAAESRLLLEPECAATH 424 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 424 (519)
.....+..+.+-|......|. ++..+-..+..+++++++... +..+++++--.-+.. ..-...
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-------------~~Rd~l 77 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-------------EQRDYV 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-------------hHHHHH
Confidence 334445566666766666553 778887778899999887666 777777662111010 112345
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC
Q 044422 425 VQLANLYAGVRCWDQAARVRKLMKDK 450 (519)
Q Consensus 425 ~~L~~~~~~~g~~~~A~~~~~~m~~~ 450 (519)
..|..++.+.|+|++|.+.++.+.+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56899999999999999999999875
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.72 E-value=0.022 Score=54.73 Aligned_cols=253 Identities=9% Similarity=0.059 Sum_probs=164.2
Q ss_pred cchhhHHhhhhhcCCCCCCCchHHHHHHHHHHHhhccccccchhhhcccCCCCCCCCchhhhhhhhhcCCccCHHHHHHH
Q 044422 43 KSLHKALRVLDIISPRTRDSTKTEVHLRLIQDFLQTDSKHLDSQKFNHDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISM 122 (519)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 122 (519)
++++.|.++-+... ...+|..+-++.+..+ ......+.+.+.........+.......+ .+++-+..
T Consensus 39 ~~ldRa~eyA~~~n-------~p~VWs~LgkAqL~~~----~v~eAIdsyIkA~Dps~y~eVi~~A~~~~--~~edLv~y 105 (624)
T 3lvg_A 39 GNLDRAYEFAERCN-------EPAVWSQLAKAQLQKG----MVKEAIDSYIKADDPSSYMEVVQAANTSG--NWEELVKY 105 (624)
T ss_dssp CCSTTTTTSSSSCC-------CCCCSSSHHHHTTTSS----SCTTTTTSSCCCSCCCSSSHHHHHTTTSS--CCTTHHHH
T ss_pred cccHHHHHHHHHhC-------CccHHHHHHHHHHccC----chHHHHHHHHhCCChHHHHHHHHHHHhCC--CHHHHHHH
Confidence 44455554444443 2234555555544332 22222333333333333455666665554 67777777
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCC-----
Q 044422 123 HHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMP----- 197 (519)
Q Consensus 123 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 197 (519)
+...++..- ++..=+.|+-+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 106 L~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akL 176 (624)
T 3lvg_A 106 LQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRL 176 (624)
T ss_dssp HHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTT
T ss_pred HHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHH
Confidence 665554422 44455678889999988876555442 4677677778888888899988888888775
Q ss_pred -------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHH
Q 044422 198 -------------------VRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSA 258 (519)
Q Consensus 198 -------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 258 (519)
..++.||-.+-.+|...+.+.-|.-.--...- .|| -...++.-|-..|.+++...+
T Consensus 177 AstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHH
Confidence 13788999999999999998877655433332 222 233567778889999999888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhHHHHHHHHHHHcCChHHHHHH
Q 044422 259 HCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG----K-------DIVSWNSMIAGYAQHGLAVRAIDL 324 (519)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~ 324 (519)
++.-.... .....+|+-|.-.|+|- ++++..+.++.... | ....|..++-.|++-.+++.|...
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 88776432 46788999999888876 45666665554332 2 556789999999999998877543
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.30 E-value=4.6 Score=38.35 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCcCHHH
Q 044422 305 WNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA-----KHGLKPELDH 374 (519)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 374 (519)
...++..+...|++.+|...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+. +.|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3344455555555555555555554432 3355555555555555566555555555543 2355555443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.34 E-value=22 Score=34.36 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 044422 215 WQVDMCLELYRMMRN-----SMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 264 (519)
|+++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777666655432 22344455666677777777777776666655543
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.34 E-value=5.8 Score=28.98 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=++.+-++.+....+.|++......+++|.+.+++..|..+++-++..- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566667777777888999999999999999999999999998775542 333456766654
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.73 E-value=4.4 Score=36.40 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCC
Q 044422 304 SWNSMIAGYAQ-----HGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHG-GLVEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 304 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~ 369 (519)
.|..+...|.+ -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+.+.+.+++.......
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555555 256666666666655532211234444444555553 5566666666666554433
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.19 E-value=4.2 Score=29.71 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+..++.+-++.+....+.|+.......+.+|.+.+++..|.++++-++.. ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45566777777777778888888888888888888888888888877732 1233445666654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.58 E-value=4 Score=38.76 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=46.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHHHHH
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM--------PIYPNAVIWEAAES 412 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~~~~ 412 (519)
..++..+...|+++.+...+..+.... +.+...|..+|.+|.++|+..+|.+.|+.+ ++.|+..+-.....
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555666677777666666665432 335556666777777777777766665543 56666666655555
Q ss_pred hhhcCCC
Q 044422 413 RLLLEPE 419 (519)
Q Consensus 413 ~~~~~~~ 419 (519)
.+.-+|.
T Consensus 254 il~~~~~ 260 (388)
T 2ff4_A 254 ILRQQPL 260 (388)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 5544443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.91 E-value=3.8 Score=42.41 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=43.4
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 379 VDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
.+-|...|+++.|+++-+ +++...|.+..+|..|..+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak---------------~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSN---------------TSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHH---------------HHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHH---------------HHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566788888887665 445667777788888999999999999999999886
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.40 E-value=25 Score=32.29 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLEL----YRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
.|.++..-|.+.+++++|++++-. -...+.+.|+...+-++ ++-..+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778899999999987643 23455666776555444 456667788899988888888887
Q ss_pred ccCCchH-HHHHHHH----HHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHH
Q 044422 248 GSGALGQ-GRSAHCQ----TIRMG--FFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVR 320 (519)
Q Consensus 248 ~~g~~~~-a~~~~~~----~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 320 (519)
....-+- =..+++. -.+.| -.-+......+...|.+.+++.+|...|-.-.++++..|..++..+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 7654321 1223333 33333 23467788889999999999999999885322233456655554444433321
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 321 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
.+|...-..++ -|...+++..|..+++...
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 11222222333 3555678888888776655
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.20 E-value=8.7 Score=30.57 Aligned_cols=97 Identities=10% Similarity=0.207 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHccCCHHHHHHHHHHHHHc
Q 044422 300 KDIVSWNSMIAGYAQHGLA------VRAIDLFEEMMKQRVKPDAI----TFLGVIS---SCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~~ 366 (519)
.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..|-- .+...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4667777777777777887 7777888877664 555421 1111110 122347888888888888754
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 367 GLKPELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
+-.- ...|-...+--.++|++..|.+++...
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3222 666766777777889999998888764
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.47 E-value=41 Score=34.04 Aligned_cols=267 Identities=10% Similarity=0.005 Sum_probs=146.9
Q ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 044422 156 PYQCLAIRTG-FIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEP 234 (519)
Q Consensus 156 ~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 234 (519)
++-..+.+.. .+.....-+..+..+++.+++.....++.. ...+...-.....+....|+..+|......+-..| ..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 3443444433 233334556667778888999988887776 44455555667778888888888877777776655 23
Q ss_pred CHHHHHHHHHHHHccCCchHH--HHHHHHHHHcC-----------CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044422 235 NDFTFTSILSACTGSGALGQG--RSAHCQTIRMG-----------FFSYIQ-VANSLISMYCKCGNVEEAVYVFNNMHGK 300 (519)
Q Consensus 235 ~~~t~~~ll~~~~~~g~~~~a--~~~~~~~~~~~-----------~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 300 (519)
....+..++..+.+.|.+... ..=+..+...| ++++.. ....++..+.+ ...+....... .+
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~ 210 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GA 210 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CC
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CC
Confidence 344567777777766655432 22222222222 112211 11222222221 12222222221 12
Q ss_pred Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHH
Q 044422 301 DIV---SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFL----GVISSCRHGGLVEEGKVYFDSMAKHGLKPELD 373 (519)
Q Consensus 301 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 373 (519)
+.. .+...+.-+.+ .+.+.|...|....+.. ..+..... .+.......+...++...+....... ++..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 221 11222333334 37899999998886543 22333222 22223334452455666666654432 4444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHH
Q 044422 374 HYSCVVDLLGRAGLLEEARDFIKQMPIYP-NAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMK 448 (519)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 448 (519)
...-.+....+.|+++.|...|+.|...+ +..-|. .=+..++...|+.++|..+|+...
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~----------------YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR----------------YWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH----------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH----------------HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555667899999999999996322 112222 225778888999999999988864
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.47 E-value=11 Score=27.42 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=59.6
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++- -.+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45777777777777663 4444444556677888899999888888888888887664 4577888888777777776
Q ss_pred CCCCCCHHHH
Q 044422 331 QRVKPDAITF 340 (519)
Q Consensus 331 ~~~~p~~~t~ 340 (519)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3333333
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.26 E-value=32 Score=37.87 Aligned_cols=144 Identities=10% Similarity=-0.007 Sum_probs=98.4
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------------------
Q 044422 243 LSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK---------------------- 300 (519)
Q Consensus 243 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------- 300 (519)
+..+...+..+-+.++... ++.+....-.+..+|..+|++++|.++|.+....
T Consensus 819 ~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344444555544443322 2334444456778899999999999999876421
Q ss_pred ----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH
Q 044422 301 ----DIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDA----ITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL 372 (519)
Q Consensus 301 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 372 (519)
-..-|..++..+-+.|.++.+.++-....+..-+-+. ..|..+++++...|++++|...+-.+.+... -.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KK 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HH
Confidence 0123677888888999999999888776654222121 2577889999999999999999988876543 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 044422 373 DHYSCVVDLLGRAGLLEEARD 393 (519)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~ 393 (519)
..+..|+..+|..|..+.-..
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhC
Confidence 677888888888888766544
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.00 E-value=11 Score=27.35 Aligned_cols=78 Identities=13% Similarity=0.065 Sum_probs=55.9
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044422 251 ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEMMK 330 (519)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (519)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777777663 44444445566778888888888888888888888877643 567777777777767766
Q ss_pred CC
Q 044422 331 QR 332 (519)
Q Consensus 331 ~~ 332 (519)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.53 E-value=36 Score=32.80 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=103.7
Q ss_pred CCHHHHHHHHccCC-----C----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCch
Q 044422 184 RVIIDAYKVFEEMP-----V----RNVVSWTAIIAAFAQEWQVDMCLELYRMMRN-SMLEPNDFTFTSILSACTGSGALG 253 (519)
Q Consensus 184 g~~~~A~~~~~~m~-----~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~ 253 (519)
|+++.|++.+-.+. . ........++..|...++++...+.+.-+.. +|..+.. ...++..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~------ 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVM------ 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH------
Confidence 67888887765543 1 2345677889999999999998877765543 3322222 222222211
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHH
Q 044422 254 QGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGK-------DIVSWNSMIAGYAQHGLAVRAIDLFE 326 (519)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (519)
+.+.... .++..+...++.... ...+. .......|...+...|++.+|.+++.
T Consensus 102 ------~~l~~~~-~~d~~~~~~~i~~l~-------------~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~ 161 (445)
T 4b4t_P 102 ------EYLKSSK-SLDLNTRISVIETIR-------------VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILC 161 (445)
T ss_dssp ------HHHHHHC-TTHHHHHHHHHHCCS-------------SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------HHHhcCC-chhHHHHHHHHHHHH-------------HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1111111 112222221111110 00110 11223456677777888888888887
Q ss_pred HHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCcC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 044422 327 EMMKQ--RVKPD---AITFLGVISSCRHGGLVEEGKVYFDSMAK----HGLKPE--LDHYSCVVDLLGRAGLLEEARDFI 395 (519)
Q Consensus 327 ~m~~~--~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 395 (519)
.+... |.... ...+...++.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|...|
T Consensus 162 ~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 162 ELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77542 22111 23455667778888888888888887642 222222 234566777777888888887777
Q ss_pred HhC
Q 044422 396 KQM 398 (519)
Q Consensus 396 ~~~ 398 (519)
.+.
T Consensus 242 ~e~ 244 (445)
T 4b4t_P 242 QEI 244 (445)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.79 E-value=41 Score=37.07 Aligned_cols=81 Identities=7% Similarity=0.034 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 044422 239 FTSILSACTGSGALGQGRSAHCQTIRMGFFSY----IQVANSLISMYCKCGNVEEAVYVFNNMHGK--DIVSWNSMIAGY 312 (519)
Q Consensus 239 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~ 312 (519)
|..++..+-+.+.++.+.++-....+..-+.+ ...|..+.+.+...|++++|...+-.+... -......++..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 44455555555555555555444443221111 114455555555556655555555444321 123344455555
Q ss_pred HHcCChH
Q 044422 313 AQHGLAV 319 (519)
Q Consensus 313 ~~~g~~~ 319 (519)
|..|..+
T Consensus 982 ce~~~~~ 988 (1139)
T 4fhn_B 982 TKQGKIN 988 (1139)
T ss_dssp HHHCCHH
T ss_pred HhCCChh
Confidence 5544433
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.57 E-value=11 Score=29.11 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHH
Q 044422 115 DVEKLISMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLIT 178 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (519)
|.=+...-++.+...++.|++......+++|.+.+|+..|..+|+-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44455666666777778889999999999999999999999998877554 2334556766654
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.07 E-value=32 Score=31.23 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 044422 172 VGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLE----LYRMMRNSMLEPNDFTFTSILSACT 247 (519)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~~ 247 (519)
.|.++..-|.+.+++++|++++.. -...+.+.|+...|-+ +++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 566777778889999999887653 2345566777666555 4566667788999988888888876
Q ss_pred ccCCc-----hHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc---CC
Q 044422 248 GSGAL-----GQGRSAHCQTIRMGF--FSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQH---GL 317 (519)
Q Consensus 248 ~~g~~-----~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~ 317 (519)
....- +-..+.+.+-.+.|- .-+......+...|.+.+++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 64322 222333444444432 246788999999999999999999988733323455565555544443 43
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 044422 318 AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMA 364 (519)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (519)
..++-- ..-..++ -|...+++..|..+++...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333211 1112222 3445788888888888665
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.71 E-value=39 Score=31.92 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHH---
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHG--------KDIVSWNSMIAGYAQHGL-AVRAIDLFEEMMKQRVKPDAITF--- 340 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~--- 340 (519)
....|...|.+.|+.++..+++..... ........+++.+....+ .+.-.++..+..+..- -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 445566667777777777766666543 122344556665554322 3333333333322110 011122
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHHc--CCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 044422 341 ---LGVISSCRHGGLVEEGKVYFDSMAKH--GLKP---ELDHYSCVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 341 ---~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 398 (519)
..+...|...|++.+|.+++..+.+. .... -..+|-.-++.|...|++.++...+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 24667777888888888777777642 1111 1233455566777788888887777655
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.28 E-value=8.5 Score=29.81 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 044422 317 LAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVD 380 (519)
Q Consensus 317 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 380 (519)
+..+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45566777777777788889999999999999999999999999888742 2344556776654
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.25 E-value=26 Score=27.92 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 044422 215 WQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFS 269 (519)
Q Consensus 215 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 269 (519)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 67777777777776543222 5555555555667888888888888888776444
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.65 E-value=15 Score=37.97 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=35.1
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044422 245 ACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH 298 (519)
Q Consensus 245 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 298 (519)
.|...|+++-|.++-++..... +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3445677777777776666653 4456677777777777777777777776663
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.11 E-value=27 Score=27.05 Aligned_cols=73 Identities=7% Similarity=-0.058 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 044422 332 RVKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPNA 404 (519)
Q Consensus 332 ~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 404 (519)
+-.|+..|--.+..++.++.. ..++..+++.+.+.+-.-....+-.|.-++.+.|++++|.++.+.+ .+.|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 345566665556666666654 4567888888887552123455566778889999999999988876 455543
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.47 E-value=59 Score=29.81 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDL----FEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
.+|.++..=|.+.+++++|.+++-. -...+.+.|+...|.++ ++-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556666778889999999987653 23345666776555544 46666678999998888888887
Q ss_pred HccCC--HHHHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhh-hcC-
Q 044422 348 RHGGL--VEEGKVYFDSMAK----HG--LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRL-LLE- 417 (519)
Q Consensus 348 ~~~g~--~~~a~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~-~~~- 417 (519)
..... +++ ..+.+.+.+ .| -.-|+.....+...|.+.+++.+|...|- .+.++....+..+...+ +..
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence 76553 232 344555542 23 23467788889999999999999999884 34344434553333222 222
Q ss_pred CCCchh-HHHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 418 PECAAT-HVQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 418 ~~~~~~-~~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
|..... ....+--|.-.++...|..+++...+
T Consensus 183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 223333 33356677888999999998877664
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.33 E-value=35 Score=27.60 Aligned_cols=112 Identities=6% Similarity=0.006 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HH
Q 044422 275 NSLISMYCKCGNVEEAVYVFNNMHG-----KDI-------VSWNSMIAGYAQHGLAVRAIDLFEEMMKQR-VKPDAI-TF 340 (519)
Q Consensus 275 ~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~-t~ 340 (519)
-.-+..+...+.++.|+-+.+.+.. +++ .++..+.+++...|++..|...|++..+.. .-+... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445666677777777766665432 221 245556677777777777777777754321 111111 11
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 341 LGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 341 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
..+ .. ...... ......+...---+..+|.+.|++++|+.+++.++
T Consensus 104 ~~~-~~--~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 104 PST-GN--SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc-cc--cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111 00 000000 01122344454458889999999999999999885
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.17 E-value=50 Score=27.65 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCCeeEEEEEc
Q 044422 385 AGLLEEARDFIKQMPIYPNAVIWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLMKDKGLKTNPGCSWIEIM 464 (519)
Q Consensus 385 ~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 464 (519)
++...++.++|..|. ...+-...+..|...+..+-..|++.+|.++|+.-.+.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~-------------~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~--------- 149 (202)
T 3esl_A 92 SNNFHESENTFKYMF-------------NKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY--------- 149 (202)
T ss_dssp TTCHHHHHHHHHHHH-------------HHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH---------
T ss_pred ccccCCHHHHHHHHH-------------HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH---------
Confidence 454667777777661 0111223344666678888999999999999999888876553
Q ss_pred CEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCC
Q 044422 465 NVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502 (519)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~ 502 (519)
+......+++..+|.+.+++.|
T Consensus 150 ----------------~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 150 ----------------NRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTTCCCC
T ss_pred ----------------HHHHHHHHHHHHHHHhcCCCCC
Confidence 2445566677788998888433
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.03 E-value=41 Score=27.17 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=65.6
Q ss_pred CCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHc-CCCcC-------HHHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 044422 331 QRVKPDAITF--LGVISSCRHGGLVEEGKVYFDSMAKH-GLKPE-------LDHYSCVVDLLGRAGLLEEARDFIKQM-- 398 (519)
Q Consensus 331 ~~~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-- 398 (519)
.|+.|....+ ..-++.+...|.++.|.-+.+.+... +..|+ ..++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555554433 33356677889999998887776531 11233 235667889999999999999999874
Q ss_pred --C-C--CCCHH----HHHHHHHhhhcCCCCchhHHHHHHHHhccCCHHHHHHHHHHH
Q 044422 399 --P-I--YPNAV----IWEAAESRLLLEPECAATHVQLANLYAGVRCWDQAARVRKLM 447 (519)
Q Consensus 399 --~-~--~p~~~----~~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 447 (519)
+ + .++.. +....-....+ +.+...-.-+..+|.+.|++++|+.+++..
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC--------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccccccccCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1 11110 00000000011 222345566899999999999999998853
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.98 E-value=50 Score=27.20 Aligned_cols=48 Identities=6% Similarity=-0.042 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCC
Q 044422 169 NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQ 216 (519)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~ 216 (519)
+..+-...+.++++.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 344444444444444444333333333444444444444444444444
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.10 E-value=1.4e+02 Score=31.90 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=66.4
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHhcCCHHHHHHHHHhcCC-CChh-HHH---HHHHHHHHcCCh
Q 044422 246 CTGSGALGQGRSAHCQTIRMGFFSYIQVANSLIS--MYCKCGNVEEAVYVFNNMHG-KDIV-SWN---SMIAGYAQHGLA 318 (519)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~ 318 (519)
++-.|+.+....++..+.+.. +..+...+.- ++.-.|+.+.+..+.+.+.. .++. -|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 344555555555555554421 1122222222 22244555555555444432 2221 122 223345556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCH-HHHHHHHHh
Q 044422 319 VRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLL-EEARDFIKQ 397 (519)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~ 397 (519)
....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|.+++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 55555666665431 1122222222223333455455555555554433 34444444444444444432 455666666
Q ss_pred CCCCCCH
Q 044422 398 MPIYPNA 404 (519)
Q Consensus 398 ~~~~p~~ 404 (519)
+--.+|.
T Consensus 655 L~~D~d~ 661 (963)
T 4ady_A 655 LTKDPVD 661 (963)
T ss_dssp HHTCSSH
T ss_pred HccCCCH
Confidence 5333443
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.52 E-value=47 Score=26.03 Aligned_cols=71 Identities=7% Similarity=-0.054 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 044422 333 VKPDAITFLGVISSCRHGGL---VEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQM-PIYPN 403 (519)
Q Consensus 333 ~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 403 (519)
-.|+..+--.+..++.++.. ..++..+++.+.+.+-.-.....-.|.-++.+.|++++|.++.+.+ .+.|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 35666666666677777665 4567888888877542223444555777899999999999988876 33443
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=63.07 E-value=35 Score=26.37 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGL---AVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 365 (519)
+.+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|+++.|.+..+.+.+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333334444444443 334566666665543111122333444466777777777777777665
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.45 E-value=95 Score=28.13 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID----LFEEMMKQRVKPDAITFLGVISSC 347 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~~~p~~~t~~~ll~~~ 347 (519)
..|.++..=|.+.+++++|.+++.. -...+.+.|+...|.+ +++-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556666778888899999888653 2334566777666555 456666778999998888888877
Q ss_pred HccCCHH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC---
Q 044422 348 RHGGLVE-EGKVYFDSMAK----HG--LKPELDHYSCVVDLLGRAGLLEEARDFIKQMPIYPNAVIWEAAESRLLLE--- 417 (519)
Q Consensus 348 ~~~g~~~-~a~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~~~~~~~~~--- 417 (519)
.....-+ .-.++++.+.+ .| -.-++.....+...|.+.|++.+|...|- .+..-+...+..+..-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCC
Confidence 6643211 12345555542 22 22477888999999999999999999776 32111233332222222111
Q ss_pred --CCCchhH-HHHHHHHhccCCHHHHHHHHHHHHH
Q 044422 418 --PECAATH-VQLANLYAGVRCWDQAARVRKLMKD 449 (519)
Q Consensus 418 --~~~~~~~-~~L~~~~~~~g~~~~A~~~~~~m~~ 449 (519)
|.....| ...+--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1112222 2234567788999999999987653
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.52 E-value=21 Score=31.46 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=16.4
Q ss_pred ccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 044422 248 GSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVY 292 (519)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 292 (519)
+.|+++++.+....-++.. +.|...-..++..+|-.|+++.|..
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~ 52 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADE 52 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 3334444433333333332 3333333333333333333333333
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.82 E-value=38 Score=29.54 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 351 GLVEEGKVYFDSMAKHGLKPELDH--YSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 351 g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
+.......+++.+.+.|..++... -...+...++.|+.+-+..+++..+
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 333333455555555555443211 1123444556677777666666443
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.80 E-value=27 Score=29.78 Aligned_cols=54 Identities=9% Similarity=-0.029 Sum_probs=28.3
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCCHHHHHHHHcc
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYV--GSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3444556777766666666555554433221 12234445556666655555554
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.78 E-value=61 Score=25.71 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDI---VSWNSMIAGYAQHGL--AVRAIDLFEEMMKQRVKP 335 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 335 (519)
..+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 346778888888999999999998876632 334444445554322 456777777777776543
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.79 E-value=64 Score=24.71 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 044422 273 VANSLISMYCKCGNVEEAVYVFNNMHGKDI---VSWNSMIAGYAQHGL--AVRAIDLFEEMMKQRVKPD 336 (519)
Q Consensus 273 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 336 (519)
..+.++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 346678888888999999999998876632 334444445554432 4567778888877765543
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.62 E-value=1.3e+02 Score=28.66 Aligned_cols=258 Identities=9% Similarity=-0.009 Sum_probs=102.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH--
Q 044422 238 TFTSILSACTGSGALGQGRSAHCQTIRM--GFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHG-----KDIVSWNSM-- 308 (519)
Q Consensus 238 t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l-- 308 (519)
+...+...+.+.|+++.|.+.+..+... +...-...+-.++..+...+++..+...+.+... ++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555566666666666666555543 2222344555556666666666666655555431 222211111
Q ss_pred --HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHccCCHHHHHHHHHHH--HH-cCCCcCHHHHHHH
Q 044422 309 --IAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLG-----VISSCRHGGLVEEGKVYFDSM--AK-HGLKPELDHYSCV 378 (519)
Q Consensus 309 --i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-----ll~~~~~~g~~~~a~~~~~~m--~~-~~~~p~~~~~~~l 378 (519)
...+...+++..|...|-+....-...+...+.. ++.+.....+.+.-..+++.- .. ....|....+..+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l 292 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSL 292 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHH
Confidence 1123356778888777776654322222222222 222223333322222222111 11 1123444555566
Q ss_pred HHHHHHcCCHHHHHH-HHHhC--------CCCCCHHHH-HH-HHHhh--hcCCCCchhHHHHHHHHhccCCHHHHHHHHH
Q 044422 379 VDLLGRAGLLEEARD-FIKQM--------PIYPNAVIW-EA-AESRL--LLEPECAATHVQLANLYAGVRCWDQAARVRK 445 (519)
Q Consensus 379 i~~~~~~g~~~~A~~-~~~~~--------~~~p~~~~~-~~-~~~~~--~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 445 (519)
+.++..+. +....+ +.+.. -+.|....+ +. .++++ -+.|-..-....|...+.- ..+++.+.+-
T Consensus 293 ~~~~~~~~-~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~--s~~~~E~~L~ 369 (429)
T 4b4t_R 293 TISLYASD-YASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGV--SVAFLDNDLG 369 (429)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTS--CHHHHHHHHH
T ss_pred HHHHHhcc-HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCc--CHHHHHHHHH
Confidence 66665554 333333 22221 122222221 11 11111 1335555666666766654 4688889999
Q ss_pred HHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCC
Q 044422 446 LMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPE 502 (519)
Q Consensus 446 ~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~ 502 (519)
+|...|-- +- ..-.+.+.+.. ...+.....+..+.+..+.++.++++.|..-|
T Consensus 370 ~lI~~g~l-~a--kID~~~giv~~-~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 370 KFIPNKQL-NC--VIDRVNGIVET-NRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp HHHHHTSS-CE--EEETTTTEEEE-CC------------------------------
T ss_pred HHHHcCCe-EE--EEcCCCCEEEE-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888742 11 11122233332 22223334556666666667777777766544
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.66 E-value=76 Score=24.88 Aligned_cols=95 Identities=7% Similarity=-0.030 Sum_probs=63.6
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCCHHHHHHHHHhhhcCCC-CchhHHHHHHHHhccCCHHHHHHH
Q 044422 368 LKPELDHYSCVVDLLGRAGLLEE---ARDFIKQMPIYPNAVIWEAAESRLLLEPE-CAATHVQLANLYAGVRCWDQAARV 443 (519)
Q Consensus 368 ~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~ 443 (519)
-.|+..+-..+..+++++.+.+. +..+++++ +...|. .-.....|..++.+.|+|++|.++
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l---------------~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDI---------------YKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH---------------HHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------HhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 36788887778889999886554 45555544 223332 223455689999999999999999
Q ss_pred HHHHHHCCCCCCCeeEEEEEcCEEEEEEecCCcCcChhhHHHHHHHHHHHHHHcCCCCCc
Q 044422 444 RKLMKDKGLKTNPGCSWIEIMNVVYRFRAEDKSNTRLSEILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 444 ~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
.+.+.+.. |+. .++...-+.+.+.|.+.|+..=+
T Consensus 100 ~d~lL~~e--P~n------------------------~QA~~Lk~~Ie~~i~kdGliG~a 133 (144)
T 1y8m_A 100 VDTLFEHE--RNN------------------------KQVGALKSMVEDKIQKETLKGVV 133 (144)
T ss_dssp HHHHHHTC--CCC------------------------HHHHHHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHhcC--CCc------------------------HHHHHHHHHHHHHHHHhchhhhh
Confidence 99998853 443 23333444455778888876443
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.28 E-value=22 Score=31.24 Aligned_cols=238 Identities=8% Similarity=-0.034 Sum_probs=119.3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCCHHHHHHHHccCCCC---ChhHHHHHHHHHHh
Q 044422 140 TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVY---VGSSLITLYSKCRVIIDAYKVFEEMPVR---NVVSWTAIIAAFAQ 213 (519)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~ 213 (519)
+.+...++.|+.+.+.. +++.|..++.. .-.+.+...+..|+.+-+..+++.-..+ +....+.+. ..+.
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL-LAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHH
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHH
Confidence 45556677888765544 44556544422 1234566677788888888777764432 233333333 3345
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH------------HHHHHH
Q 044422 214 EWQVDMCLELYRMMRNSMLEPND---FTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ------------VANSLI 278 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------~~~~li 278 (519)
.|+.+- ++.+.+.|..++. ... +.+...+..|+.+- ++.+.+.|..++.. .-.+.+
T Consensus 82 ~~~~~~----v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVKL----LKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHHH----HHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHHH----HHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 566543 4444456655542 222 23444556666544 44455555443321 011345
Q ss_pred HHHHhcCCHHHHHHHHHhcC-C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCC
Q 044422 279 SMYCKCGNVEEAVYVFNNMH-G---KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT--FLGVISSCRHGGL 352 (519)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~ 352 (519)
...+..|+.+-+..+++... . .+....+.+ ...+..|......++++.+.+.|..++... -.+.+...+..|.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 55566788887777776522 1 222222333 333456665556677777788887665321 1122334445566
Q ss_pred HHHHHHHHHHHHH-cCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 044422 353 VEEGKVYFDSMAK-HGLKPELDH--YSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 353 ~~~a~~~~~~m~~-~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.+-+ +.+.+ .|..++... -...+...++.|+.+-+.-+++
T Consensus 232 ~~~v----~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 232 LGLV----QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp HHHH----HHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH----HHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 5543 33443 454443221 1122333344555544444333
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.46 E-value=67 Score=28.33 Aligned_cols=56 Identities=20% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 044422 310 AGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKH 366 (519)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 366 (519)
..+.+.|++++|+.....-.+.. +-|...=..+++-+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567888999998888877764 346666677888889999999999888888763
No 276
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=53.22 E-value=11 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCc
Q 044422 478 TRLSEILPVLDFLVDQMKTLGYVPEV 503 (519)
Q Consensus 478 ~~~~~~~~~~~~l~~~m~~~g~~p~~ 503 (519)
....++...+++-.++++..|+.||.
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 35778899999999999999999999
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.75 E-value=67 Score=30.69 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCcCHHH--HH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPD--AITFLGVISSCRHGGLVEEGKVYFDSMAK---HGLKPELDH--YS 376 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~--~~ 376 (519)
++..+..-|.+.|++++|.+.+.++...-..+. ...+..++..+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677778888888888888888776422222 34566667777777888888777777653 222222221 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 044422 377 CVVDLLGRAGLLEEARDFIKQM 398 (519)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~~ 398 (519)
.-...+...+++..|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1222233456777777766655
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.05 E-value=1.5e+02 Score=27.44 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKC 284 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (519)
..+|.-|...++.++|...++++......|.......-...=.+....+.+-.++..+.. ++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CCHH-------------HHHHHHHhcCCCC--------------------------------------------------
Q 044422 285 GNVE-------------EAVYVFNNMHGKD-------------------------------------------------- 301 (519)
Q Consensus 285 ~~~~-------------~a~~~~~~~~~~~-------------------------------------------------- 301 (519)
.++. -|..+.+.+..+.
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veel 216 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHL 216 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHH
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 044422 302 IVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGG--LVEEGKVYFDSMAKHGLKPELDHYSCVV 379 (519)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li 379 (519)
....+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.+ ..+...+++..+...|+-+.......+.
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHHcCCHH
Q 044422 380 DLLGRAGLLE 389 (519)
Q Consensus 380 ~~~~~~g~~~ 389 (519)
+.+....++.
T Consensus 296 ~vl~~ldDl~ 305 (358)
T 3eiq_C 296 RIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccHhh
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.49 E-value=1.2e+02 Score=25.03 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCC
Q 044422 168 ANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQ 216 (519)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~ 216 (519)
++..+-...+..+++.|..+..-.+.+.+..++...-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444445555555543333333444444444444444444444443
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.03 E-value=24 Score=29.93 Aligned_cols=17 Identities=6% Similarity=-0.197 Sum_probs=8.3
Q ss_pred HHHccCCHHHHHHHHHH
Q 044422 346 SCRHGGLVEEGKVYFDS 362 (519)
Q Consensus 346 ~~~~~g~~~~a~~~~~~ 362 (519)
...+.|..+-+..+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33455555554444443
No 281
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.95 E-value=1.4e+02 Score=27.40 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC
Q 044422 375 YSCVVDLLGRAGLLEEARDFIKQMP 399 (519)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~~~ 399 (519)
...++..+.+....+.+.++|.+-+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~s~ 168 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWREAG 168 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHcC
Confidence 3445555666666666666666653
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=42.70 E-value=3.4e+02 Score=28.95 Aligned_cols=217 Identities=7% Similarity=-0.113 Sum_probs=116.8
Q ss_pred HHHhCCCHHHHHHHHccCCCC----Chh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 044422 179 LYSKCRVIIDAYKVFEEMPVR----NVV--SWTAIIAAFAQEWQVDMCLELYRMMRNSML-------EPNDFTFTSILSA 245 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~t~~~ll~~ 245 (519)
+....|+.++++.+++..... +.. .-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455678888888888887641 211 222334455666666678887766554221 0112222333333
Q ss_pred HHccCC-chHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHH--HHHHcCChH
Q 044422 246 CTGSGA-LGQGRSAHCQTIRMGFFSYI--QVANSLISMYCKCGNVEEAVYVFNNMHG-KDIVSWNSMIA--GYAQHGLAV 319 (519)
Q Consensus 246 ~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~--~~~~~g~~~ 319 (519)
.+-.|. -+++.+.+..+....- +.. ..--++...++-.|+-+....++..+.+ .+......+.. ++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333343 2355555555544321 111 1222334445567787777777775543 22233333333 444778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 320 RAIDLFEEMMKQRVKPDAITFL--GVISSCRHGGLVEEGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 320 ~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
.+..+++.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888888764 222222222 33446777888888778888887642 23333333344455556776666666664
Q ss_pred C
Q 044422 398 M 398 (519)
Q Consensus 398 ~ 398 (519)
+
T Consensus 620 L 620 (963)
T 4ady_A 620 L 620 (963)
T ss_dssp G
T ss_pred H
Confidence 4
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.65 E-value=1.2e+02 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=17.1
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 044422 370 PELDHYSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
++.......+..+.+.|+.++|.++|-+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 4445555566666667777777666543
No 284
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.96 E-value=1e+02 Score=27.74 Aligned_cols=236 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHhHCCCCCCHHHHH---HHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHH----------------------
Q 044422 120 ISMHHDLHRERLKVDASFLS---TAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGS---------------------- 174 (519)
Q Consensus 120 ~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---------------------- 174 (519)
+++.+.+.+.|..+|...-. +-+...+..|+.+ +.+.+++.|..++.....
T Consensus 38 ~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T 4g8k_A 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113 (337)
T ss_dssp HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhh
Q ss_pred -------------HHHHHHHhCCCHHHHHHHHccCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHHHHH
Q 044422 175 -------------SLITLYSKCRVIIDAYKVFEEMPVRNVVSWT------------AIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 175 -------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
+.+...+..|..+.+..+++.-...+...-. +-+...++.|+.+-+..++++...
T Consensus 114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga 193 (337)
T 4g8k_A 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 193 (337)
T ss_dssp TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Q ss_pred CCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHhcCC----CChh
Q 044422 230 SMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVAN--SLISMYCKCGNVEEAVYVFNNMHG----KDIV 303 (519)
Q Consensus 230 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~----~~~~ 303 (519)
.--..|....+.+..++.. +.......+.+.+.+.|..++..... +.+...+..|..+.+..++..-.. .|..
T Consensus 194 d~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~ 272 (337)
T 4g8k_A 194 DVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 272 (337)
T ss_dssp CTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred CcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCcCH
Q 044422 304 SWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSMAKHGLKPEL 372 (519)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 372 (519)
-++.|..+..... .++.+.+.+.|..+|..+ .+...++.|..+ +.+.+.+.|-.||.
T Consensus 273 G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 273 GKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp SCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred CCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.96 E-value=1.5e+02 Score=24.36 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh
Q 044422 134 DASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ 213 (519)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 213 (519)
|...-...+..+++.++......+.. +.. .++..+-...+.++++.++.+....+.+.+..++...-...+.++.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444445555555555333322222 221 23444444445555555544333333333444444444444444444
Q ss_pred cCC
Q 044422 214 EWQ 216 (519)
Q Consensus 214 ~~~ 216 (519)
.++
T Consensus 108 ~~~ 110 (211)
T 3ltm_A 108 IGD 110 (211)
T ss_dssp HCC
T ss_pred hCc
Confidence 443
No 286
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.64 E-value=71 Score=29.33 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHH
Q 044422 133 VDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV--GSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAA 210 (519)
Q Consensus 133 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 210 (519)
.|...++.|.. .+..|+.+.+..+ ++.|..++... -.+.+...+..|+.+-+.-+++.-...+...-.+.+..
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHHH----HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 35555554443 4456676644443 44565444321 12334555566777766666665543332111222333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC
Q 044422 211 FAQEWQVDMCLELYRMMRNSMLE 233 (519)
Q Consensus 211 ~~~~~~~~~a~~~~~~m~~~g~~ 233 (519)
.+..|+.+-+..+++.-...|..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCC
Confidence 34556666666555554433433
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.58 E-value=2.4e+02 Score=26.41 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=48.1
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHH---HH-----HHhh--hcCCCCchhHHHHHHHHhccCC
Q 044422 369 KPELDHYSCVVDLLGRAGLLEEARDFIKQMP--IYPNAVIWE---AA-----ESRL--LLEPECAATHVQLANLYAGVRC 436 (519)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~---~~-----~~~~--~~~~~~~~~~~~L~~~~~~~g~ 436 (519)
.|....+..++.+|. .+++.+...+++... +..|..... .+ ++++ -..|-..-.+..+...+.- .
T Consensus 253 ~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 253 GRDIDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp SHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTC--C
T ss_pred CccHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCc--C
Confidence 455555666666544 456766666666552 334543221 11 1111 1345566666667766654 6
Q ss_pred HHHHHHHHHHHHHCCC
Q 044422 437 WDQAARVRKLMKDKGL 452 (519)
Q Consensus 437 ~~~A~~~~~~m~~~g~ 452 (519)
.+++...+-+|...|.
T Consensus 330 ~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 330 MPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 8999999999999885
No 288
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=39.56 E-value=1.5e+02 Score=24.05 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=47.6
Q ss_pred HHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcH
Q 044422 192 VFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYI 271 (519)
Q Consensus 192 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (519)
+.+.+..++...-...+.++.+.+..+. ...+..+.. .++...-...+.++.+.++.+....+...+ . .++.
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~---d~~~ 121 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIKAL-K---DEDW 121 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH-c---CCCH
Confidence 3333344454444444555555554322 222222222 244444445555555555433222222221 1 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 044422 272 QVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHG 316 (519)
Q Consensus 272 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 316 (519)
.+-...+.++.+.++.+....+...+..++...-...+.++.+.|
T Consensus 122 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 122 FVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 444444445544444333333333333344444444444444443
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.67 E-value=76 Score=26.74 Aligned_cols=175 Identities=8% Similarity=0.042 Sum_probs=77.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcC
Q 044422 210 AFAQEWQVDMCLELYRMMRNSMLEPNDFT--FTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQ--VANSLISMYCKCG 285 (519)
Q Consensus 210 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~ 285 (519)
..++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.. .-.+.+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34455666666666655555444333210 1123333444555433 33334444333211 1112344445667
Q ss_pred CHHHHHHHHHhcCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHH
Q 044422 286 NVEEAVYVFNNMHG-------KDIVSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAIT---FLGVISSCRHGGLVEE 355 (519)
Q Consensus 286 ~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~ 355 (519)
+.+-+..+++.... .+...++. +...+..|+.+ +++.+.+.|..++... -.+.+...+..|..+-
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence 77776666665431 12122222 22333445543 3444445554443211 1122333445666554
Q ss_pred HHHHHHHHHHcCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHHh
Q 044422 356 GKVYFDSMAKHGLKPELDH--YSCVVDLLGRAGLLEEARDFIKQ 397 (519)
Q Consensus 356 a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~ 397 (519)
++.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 166 ----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 166 ----VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp ----HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred ----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 344445555443211 11233444566777666555553
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.54 E-value=1.4e+02 Score=22.84 Aligned_cols=23 Identities=0% Similarity=0.083 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m 227 (519)
+.++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444455555555555555554
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.31 E-value=1.2e+02 Score=26.18 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=14.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 044422 207 IIAAFAQEWQVDMCLELYRMMR 228 (519)
Q Consensus 207 li~~~~~~~~~~~a~~~~~~m~ 228 (519)
-++.+....++++|..++++.+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666677777776666553
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.52 E-value=45 Score=29.54 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=21.1
Q ss_pred HHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHcc
Q 044422 143 TSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEE 195 (519)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 195 (519)
...+..|+.+.+.. +++.|..++...-.+.+...+..|+.+-+..+++.
T Consensus 36 ~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 36 YYAIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 33344555554333 33444333322122334444455555555555443
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.07 E-value=1.9e+02 Score=24.10 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc-----hHHHHHHHHHHHcCCC
Q 044422 203 SWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL-----GQGRSAHCQTIRMGFF 268 (519)
Q Consensus 203 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~ 268 (519)
.+.-+|+++.+ -.+.+.|+-.+-+|.+.| .|.-..-..++-+.-.-|.- ..|...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445666654 578999999999999999 77666555556555555532 2344455555566644
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.83 E-value=80 Score=25.70 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=10.2
Q ss_pred HHHhCCCHHHHHHHHccC
Q 044422 179 LYSKCRVIIDAYKVFEEM 196 (519)
Q Consensus 179 ~~~~~g~~~~A~~~~~~m 196 (519)
..+..|+.+....++..-
T Consensus 11 ~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT
T ss_pred HHHHhccHHHHHHHHHcC
Confidence 334556666666666544
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.01 E-value=2e+02 Score=24.03 Aligned_cols=57 Identities=5% Similarity=-0.024 Sum_probs=36.0
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCc
Q 044422 214 EWQVDMCLELYRMMRNSMLEP-NDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSY 270 (519)
Q Consensus 214 ~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 270 (519)
.+....+.++|..|...|+-- -+.-|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344567777777776665433 234556666666667777777777777776665664
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.87 E-value=1.4e+02 Score=22.90 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 125 DLHRERLKVDASFLSTAVTSCGSTR-NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 125 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
.|.+.|++++..=.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 466788887766544 555666666 7888999999998887666666554556777776644
No 297
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.85 E-value=92 Score=22.35 Aligned_cols=64 Identities=6% Similarity=-0.023 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHH
Q 044422 156 PYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCL 221 (519)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 221 (519)
.++..+.+.|+- +..-...+ .......+.+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I-~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDI-QRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHH-HTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHH-HhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 366666666643 22222222 11111246788888888888888888888888887767665554
No 298
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.45 E-value=1.1e+02 Score=20.83 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=42.6
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 124 HDLHRERLKVDASFLSTAVTSCGSTR-NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 124 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
+.|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 346677888777654 4666766665 6778889999888776555666666667777766643
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.34 E-value=1.7e+02 Score=22.96 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=41.9
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 123 HHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 123 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
-+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456778887665544 35556666677889999999998887666666544556777777654
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.23 E-value=2e+02 Score=23.87 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=33.0
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 204 WTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 204 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
+..+|+++.+ -.+.+.|+-.+-+|.+.|-.|.-..-..++-+.-.-|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3445666654 5789999999999999998776665555555554444
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.14 E-value=1.1e+02 Score=24.20 Aligned_cols=23 Identities=0% Similarity=0.083 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 044422 205 TAIIAAFAQEWQVDMCLELYRMM 227 (519)
Q Consensus 205 ~~li~~~~~~~~~~~a~~~~~~m 227 (519)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34445555555555555555554
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.04 E-value=1.6e+02 Score=23.15 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 124 HDLHRERLKVDASFLSTAVTSCGSTR-NIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 124 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
+.|.+.|++++..=.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4567788887766544 555666666 7788999999998887666666555556777777754
No 303
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.17 E-value=30 Score=22.33 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHhHCC-CCCCHH
Q 044422 115 DVEKLISMHHDLHRER-LKVDAS 136 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~g-~~p~~~ 136 (519)
|++.|+..|..+...| ++|+++
T Consensus 35 d~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CHHHHHHHHHHHHHcCCCCHHHh
Confidence 9999999999998765 777654
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.95 E-value=51 Score=28.46 Aligned_cols=185 Identities=8% Similarity=-0.056 Sum_probs=90.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHH--ccCCchHHHHHHHHHHHcCC---------CC
Q 044422 208 IAAFAQEWQVDMCLELYRMMRNSMLEPNDF-------TFTSILSACT--GSGALGQGRSAHCQTIRMGF---------FS 269 (519)
Q Consensus 208 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~---------~~ 269 (519)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+. ..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 334456778887777777666655554422 2233444432 56777777777766543211 00
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH----------------HHHHHHHHHHcCChHHHHHHHHHHHH--
Q 044422 270 -YIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVS----------------WNSMIAGYAQHGLAVRAIDLFEEMMK-- 330 (519)
Q Consensus 270 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~~m~~-- 330 (519)
+..- .+.+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+ +++.+.+
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~----~v~~Ll~~~ 163 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH----IVHYLTENG 163 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH----HHHHHHHCS
T ss_pred cccCC-CCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH----HHHHHHhcc
Confidence 0011 223445566788877777776433322111 123344445667654 4444445
Q ss_pred -CCCCCCH---HHHHHHHHHHHccC-C---HHHHHHHHHHHHHcCCCc----------CHHHHHHHHHHHHHcCCHHHHH
Q 044422 331 -QRVKPDA---ITFLGVISSCRHGG-L---VEEGKVYFDSMAKHGLKP----------ELDHYSCVVDLLGRAGLLEEAR 392 (519)
Q Consensus 331 -~~~~p~~---~t~~~ll~~~~~~g-~---~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~ 392 (519)
.|..++. .-.+.|..++.... . .+...++++.+.+.|..+ |..-.+ -+...++.|+.+-+.
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCHHHHH
Confidence 4544432 22334443332221 1 222234555555544322 212222 344456678888777
Q ss_pred HHHHhC
Q 044422 393 DFIKQM 398 (519)
Q Consensus 393 ~~~~~~ 398 (519)
.++++-
T Consensus 243 ~Ll~~g 248 (260)
T 3jxi_A 243 HIIRRE 248 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 777654
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.80 E-value=49 Score=29.28 Aligned_cols=96 Identities=5% Similarity=-0.021 Sum_probs=48.2
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCCHHHHHHHHccCCC
Q 044422 121 SMHHDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYV--GSSLITLYSKCRVIIDAYKVFEEMPV 198 (519)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 198 (519)
++++.+.+.|..++...-.+.+...+..|+.+-+. .+++.|..++... -.+.+...+..|+.+-+.-+++.-..
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 120 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 44555566665444332234555667778776444 4455676554321 12234455567777766666665322
Q ss_pred ---CChhHHHHHHHHHHhcCChHHH
Q 044422 199 ---RNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 199 ---~~~~~~~~li~~~~~~~~~~~a 220 (519)
.+...+.+.+...+..|+.+-+
T Consensus 121 ~~~~~~~g~~t~L~~A~~~~~~~~v 145 (285)
T 3kea_A 121 LMFYGKTGWKTSFYHAVMLNDVSIV 145 (285)
T ss_dssp GGGCSSSGGGSHHHHHHHTTCHHHH
T ss_pred CCccCCCCCCCHHHHHHHcCCHHHH
Confidence 2222323334444455555433
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.48 E-value=2.9e+02 Score=24.84 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCCh--hHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH---HHHHHHHH
Q 044422 173 GSSLITLYSKCRVIIDAYKVFEEMPVRNV--VSWTAIIAAFAQEWQ--VDMCLELYRMMRNSMLEPNDF---TFTSILSA 245 (519)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~ 245 (519)
...+|.-|...|+.++|...++++..|.- .....++......++ -+.+-.++..+.. ++-+... .|..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999986642 223334444344443 3345556677764 4333333 24444444
Q ss_pred HHccC-CchHHHHHHHHHH----HcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHhcCC-----------CC----h-
Q 044422 246 CTGSG-ALGQGRSAHCQTI----RMGFFSYIQVANSLISMYCKCGN--VEEAVYVFNNMHG-----------KD----I- 302 (519)
Q Consensus 246 ~~~~g-~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~-----------~~----~- 302 (519)
+-... +...|..++..+. ..++-|-.......-..-...|. +..|..++. +.. ++ .
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH-TCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCCCHH
Confidence 43332 3334444443333 23332221111100000000000 222222221 111 11 1
Q ss_pred ---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCcCHHH
Q 044422 303 ---VSWNSMIAGYAQHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL--VEEGKVYFDSMAKHGLKPELDH 374 (519)
Q Consensus 303 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 374 (519)
...+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 23567888888889999999999888421111 12344455555555433 4556777777777665544433
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.15 E-value=1.9e+02 Score=22.62 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=40.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 225 RMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 225 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+.+++.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44667887766543 35666666667778899999999887655666655555667776664
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.13 E-value=71 Score=22.99 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 044422 285 GNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAID 323 (519)
Q Consensus 285 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 323 (519)
...+.|.++++.+.+.+..+|..++.++...|...-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 457888888888888888888888888877676655543
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.74 E-value=1.4e+02 Score=24.01 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHhHCC-CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC
Q 044422 119 LISMHHDLHRER-LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA 168 (519)
Q Consensus 119 A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (519)
+.++|..|...| -.--+..|......+-..|++..|..+|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.64 E-value=2e+02 Score=23.06 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHccCCHHHHHHHHHHHHH
Q 044422 312 YAQHGLAVRAIDLFEEMMKQRVKP--DAITFLGVIS-S-----CRHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 312 ~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~-~-----~~~~g~~~~a~~~~~~m~~ 365 (519)
+...|++-+|-++|+..-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344588999999999887765555 5566777777 2 3456888888888888764
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.24 E-value=1.9e+02 Score=22.40 Aligned_cols=61 Identities=8% Similarity=-0.059 Sum_probs=40.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 225 RMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 225 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+.+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 446677877766433 4555665666677888888888877655566555555666666663
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.12 E-value=1.8e+02 Score=22.17 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=40.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 226 MMRNSMLEPNDFTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 46678887776543 5566666666 677899999999887756666655555666666653
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.44 E-value=2e+02 Score=22.44 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=43.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 044422 225 RMMRNSMLEPNDFTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGNV 287 (519)
Q Consensus 225 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 287 (519)
+.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 456778888776543 5566666666 6778999999998877666666655566777776643
No 314
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.16 E-value=2.1e+02 Score=22.58 Aligned_cols=121 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred ccCCCCCCCCchhhhhhhhhcCCccCHHHHHHHHHHH-----hHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 044422 90 HDFTGTNSTFGSSNVFDQLLDTPVVDVEKLISMHHDL-----HRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT 164 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m-----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (519)
..+.+.+|...-...+.++.......-.....++++. .....+-|..-....+...-...+ +..+|..|...
T Consensus 18 ~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~ 94 (152)
T 4a1g_A 18 QSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNH 94 (152)
T ss_dssp TSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHC
Q ss_pred CC-CChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHh
Q 044422 165 GF-IANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQ 213 (519)
Q Consensus 165 g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 213 (519)
|+ .--+..|......+-..|++++|.++|+.-.+.++.....|...+..
T Consensus 95 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 95 GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
No 315
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.63 E-value=1.5e+02 Score=20.81 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHH
Q 044422 154 GAPYQCLAIRTGFIANVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMC 220 (519)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 220 (519)
...+++.+.+.|+-. ..-+..+-. .....+.|.++++.+...+..+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 446777777777432 223332222 356778888888888888888888888888877764443
No 316
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.46 E-value=2.6e+02 Score=23.44 Aligned_cols=69 Identities=25% Similarity=0.184 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc-----hHHHHHHHHHHHcCCC
Q 044422 200 NVVSWTAIIAAFAQ---EWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGAL-----GQGRSAHCQTIRMGFF 268 (519)
Q Consensus 200 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~ 268 (519)
+-..+.-+|+++.+ -.+.+.|+-.+-+|.+.|-.|.-..-..++-+.-.-|.- ..|...++.....|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445556666655 588999999999999999888766666666665554432 2344555555666644
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.40 E-value=3.7e+02 Score=26.31 Aligned_cols=59 Identities=7% Similarity=-0.017 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCCCCh-h------HH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 044422 171 YVGSSLITLYSKCRVIIDAYKVFEEMPVRNV-V------SW-TAIIAAFAQEWQVDMCLELYRMMRN 229 (519)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~------~~-~~li~~~~~~~~~~~a~~~~~~m~~ 229 (519)
..+|.+++.|...+.++.|..+..+..-|.. . .| -.+...+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567777777777777777777777654321 1 12 1234455566777777777666544
No 318
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.14 E-value=1.8e+02 Score=21.00 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-----HHcCCCcCHHHHHHH
Q 044422 321 AIDLFEEMMKQRVKPDAITFLGVISSCRHGGLVEEGKVYFDSM-----AKHGLKPELDHYSCV 378 (519)
Q Consensus 321 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l 378 (519)
|.++.++...-|+.|+..+...++..|...+- + +.++.++. ...|..|+....+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45555566666777777777777776665553 1 22222211 245667777666554
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.11 E-value=3.5e+02 Score=24.40 Aligned_cols=130 Identities=9% Similarity=0.059 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhHC-C----CCCCHHHHHH---HHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 115 DVEKLISMHHDLHRE-R----LKVDASFLST---AVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 115 ~~~~A~~~~~~m~~~-g----~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
+-++|.-+|..+... + ..|+...... .+..+.+.-++ +++..+.+.|+.|...++.-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 567788888877643 2 3333322221 12222232233 4666777889999888999999999988889
Q ss_pred HHHHHHHccCCC--CChhHHHH--HHH----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044422 187 IDAYKVFEEMPV--RNVVSWTA--IIA----AFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGA 251 (519)
Q Consensus 187 ~~A~~~~~~m~~--~~~~~~~~--li~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 251 (519)
+.+.++|+.+.. +....+-+ ++. ...+..+.++.+..++.... ..+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhCCc
Confidence 999999988752 22222222 111 12234567777777766422 1344455566655555444
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.58 E-value=1.7e+02 Score=20.59 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHH
Q 044422 255 GRSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRA 321 (519)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 321 (519)
...+++.+.+.|+-. ..-+..+.. .....++|..+++.+...+..+|..++.++...|...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 344556666655332 222222222 245677888888888888888888888888777764444
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.85 E-value=2.9e+02 Score=23.01 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=38.0
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCC
Q 044422 308 MIAGYA---QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL-----VEEGKVYFDSMAKHGLK 369 (519)
Q Consensus 308 li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~~~~ 369 (519)
+|+++. +..+.+.|+-.+-+|.+.| .|....=..++.+....|. +..|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 445543 5578888888888888888 6655555555666655553 33444555555555643
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.62 E-value=6.6e+02 Score=26.77 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 044422 277 LISMYCKCGNVEEAVYVFNNMHGKDIVSWNSMIAGYAQHGLAVRAIDLFEEM 328 (519)
Q Consensus 277 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 328 (519)
++..+...|..+-|.++...+.. ++..--.+..+|...|++++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555666666666665555444 3333234556677777777777777664
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.19 E-value=2e+02 Score=22.34 Aligned_cols=60 Identities=8% Similarity=-0.049 Sum_probs=38.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 225 RMMRNSMLEPNDFTFTSILSACTGSGALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 225 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+.+++.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34566777776643 34455555555 66788888888877655566555555566666653
No 324
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.07 E-value=1.8e+02 Score=22.54 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044422 203 SWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSG 250 (519)
Q Consensus 203 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 250 (519)
.-..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444555555555566666666665554455555555555555444
No 325
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.04 E-value=2.1e+02 Score=20.67 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044422 355 EGKVYFDSMAKHGLKPELDHYSCVVDLLGRAGLLEEARDFIK 396 (519)
Q Consensus 355 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (519)
.+.++.+++...|+.|+..+...++..|...+. + +.++.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~Ve 66 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVG 66 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHH
Confidence 356778888889999999999999999888775 2 555444
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.94 E-value=1.5e+02 Score=23.02 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCH
Q 044422 124 HDLHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 124 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (519)
+.+.+.|++++..=.. ++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4566778887766433 444455555 778999999998777556665544456777776643
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.42 E-value=7e+02 Score=26.60 Aligned_cols=127 Identities=6% Similarity=-0.064 Sum_probs=65.9
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCchHH
Q 044422 176 LITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIAAFAQEWQVDMCLELYRMMRNSMLEPNDFTFTSILSACTGSGALGQG 255 (519)
Q Consensus 176 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 255 (519)
++..+...|..+-|.++..-.+. ++..--.+..+|...|++++|...|++. ..|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA-A~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT-SLVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC-CCTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH-hhhcccCcccccc----------hhhh
Confidence 45555666677666665554443 4333345666777778888888777665 2333221100000 0000
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCh----hHHHHHHHHHHHcC
Q 044422 256 RSAHCQTIRMGFFSYIQVANSLISMYCKCGNVEEAVYVFNNMH----GKDI----VSWNSMIAGYAQHG 316 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~li~~~~~~g 316 (519)
..++... + .......-|.-++..+-+.+-++.+.++-+... ..|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111100 0 001123467788888888888887776655332 2232 36777777776554
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.04 E-value=2.8e+02 Score=21.96 Aligned_cols=71 Identities=7% Similarity=0.050 Sum_probs=48.6
Q ss_pred CHHHHHHHHHH-HhHCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCH
Q 044422 115 DVEKLISMHHD-LHRERLKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRT--GFIANVYVGSSLITLYSKCRVI 186 (519)
Q Consensus 115 ~~~~A~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 186 (519)
+.+.+++-+.. +.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 12 ~~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 12 EYDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556655544 456788876654 34667777777888999999999887 6555655544456777777754
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.37 E-value=5.5e+02 Score=25.07 Aligned_cols=21 Identities=5% Similarity=-0.027 Sum_probs=16.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCC
Q 044422 433 GVRCWDQAARVRKLMKDKGLK 453 (519)
Q Consensus 433 ~~g~~~~A~~~~~~m~~~g~~ 453 (519)
.....++|..+.-.|...|.-
T Consensus 412 ~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 412 NLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHSSCHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHcCCc
Confidence 334457899999999999964
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.31 E-value=3.4e+02 Score=22.55 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHcC
Q 044422 308 MIAGYA---QHGLAVRAIDLFEEMMKQRVKPDAITFLGVISSCRHGGL-----VEEGKVYFDSMAKHG 367 (519)
Q Consensus 308 li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~~ 367 (519)
+|+++. +..+.+.|+-.+-+|.+.|-.|....=..++.+....|. +..|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 455553 567889999999999998877766655666666655553 344445555555555
No 331
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.28 E-value=4.4e+02 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCC
Q 044422 174 SSLITLYSKCRVIIDAYKVFEEMPVR 199 (519)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~~~~m~~~ 199 (519)
..++.=|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44566666667777777777777654
No 332
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.83 E-value=2.3e+02 Score=24.07 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHccCCCCChhHHHHHHH
Q 044422 131 LKVDASFLSTAVTSCGSTRNIRGGAPYQCLAIRTGFIA-NVYVGSSLITLYSKCRVIIDAYKVFEEMPVRNVVSWTAIIA 209 (519)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 209 (519)
.+-|..-....|...-. .+....+|..|...|+.. -...|-.....+-..|++++|..+|+.-.+..+.....|..
T Consensus 113 YknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp GTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred ccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 34455544444433322 235556777777766543 33456666666777777777777776655444444444443
Q ss_pred H
Q 044422 210 A 210 (519)
Q Consensus 210 ~ 210 (519)
.
T Consensus 190 ~ 190 (223)
T 4aez_C 190 K 190 (223)
T ss_dssp H
T ss_pred H
Confidence 3
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.01 E-value=3.2e+02 Score=21.80 Aligned_cols=60 Identities=5% Similarity=-0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHccCCchHHHHHHHHHHH
Q 044422 204 WTAIIAAFAQEWQVDMCLELYRMMRNSMLEP--NDFTFTSILS-A-----CTGSGALGQGRSAHCQTIR 264 (519)
Q Consensus 204 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~-~-----~~~~g~~~~a~~~~~~~~~ 264 (519)
|..-+..| ..|++=+|.++|+..-...-.+ ....|..||. . ..+.|+...|..++.....
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 3488888888888886654455 4556666666 2 2456888888888877655
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.90 E-value=2e+02 Score=19.38 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=39.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 044422 225 RMMRNSMLEPNDFTFTSILSACTGSG-ALGQGRSAHCQTIRMGFFSYIQVANSLISMYCKCGN 286 (519)
Q Consensus 225 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 286 (519)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34667787776654 35666666554 566778888888777655566666666666666553
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.69 E-value=97 Score=26.03 Aligned_cols=18 Identities=6% Similarity=-0.089 Sum_probs=9.2
Q ss_pred HccCCHHHHHHHHHHHHH
Q 044422 348 RHGGLVEEGKVYFDSMAK 365 (519)
Q Consensus 348 ~~~g~~~~a~~~~~~m~~ 365 (519)
+..|+.+.+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444555555555555443
No 336
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.64 E-value=3.9e+02 Score=22.59 Aligned_cols=93 Identities=8% Similarity=0.044 Sum_probs=45.1
Q ss_pred hhhhhhcCCccCHHHHHHHHHHHhHCCCCCCHHHHHHHHHH---Hhc--CC--------------ChhhHHHHHHHHHHh
Q 044422 104 VFDQLLDTPVVDVEKLISMHHDLHRERLKVDASFLSTAVTS---CGS--TR--------------NIRGGAPYQCLAIRT 164 (519)
Q Consensus 104 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~--~~--------------~~~~a~~~~~~~~~~ 164 (519)
+..++......++.+-..+++.+...++.-++.. ...+.. +.+ .| -++.|..+|+.+.+.
T Consensus 23 ~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e 101 (235)
T 3bu8_A 23 ALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTE 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHh
Confidence 3344444444567777777777776665544432 112221 111 11 144566677666554
Q ss_pred CCCChHH--H-----HHHHHHHHHhCCCHHHHHHHHccCC
Q 044422 165 GFIANVY--V-----GSSLITLYSKCRVIIDAYKVFEEMP 197 (519)
Q Consensus 165 g~~~~~~--~-----~~~li~~~~~~g~~~~A~~~~~~m~ 197 (519)
--.++.. . --..+-.|.+.|.+++|.++|++..
T Consensus 102 ~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 102 FTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 3111211 1 1123344566666666666666554
No 337
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.21 E-value=74 Score=27.37 Aligned_cols=54 Identities=6% Similarity=-0.186 Sum_probs=30.0
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhCCCChHHH-------HHHHHHHHH--hCCCHHHHHHHHcc
Q 044422 142 VTSCGSTRNIRGGAPYQCLAIRTGFIANVYV-------GSSLITLYS--KCRVIIDAYKVFEE 195 (519)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~ 195 (519)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3344566788877777777777776555332 233332221 45666555555543
Done!