BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044426
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VKC|A Chain A, Putative Acetyl Transferase From Pyrococcus Furiosus
pdb|1VKC|B Chain B, Putative Acetyl Transferase From Pyrococcus Furiosus
Length = 158
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 54 HVMLVAELRENGELVGVVRGCIKGVGTKFEGQIVKLGCILGLRVSPRHRRMGIGFHLVKS 113
H VA L E EL+G V CI + VK+ I + V R +GIG L++
Sbjct: 61 HKFFVA-LNERSELLGHVWICITLDTVDY----VKIAYIYDIEVVKWARGLGIGSALLRK 115
Query: 114 VEEWLMRNGAHYTFLATEKNNVA 136
EEW GA L E +N A
Sbjct: 116 AEEWAKERGAKKIVLRVEIDNPA 138
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 92 ILGLRVSPRHRRMGIGFHLVKSVEEWLMRNGAHYTFLATEKNNVASTNLFTSRCNYM 148
I + V ++R +G+G L+ ++W L T+ NNVA+ F +C ++
Sbjct: 103 IEDITVDKKYRTLGVGKRLIAQAKQWAKEGNXPGIXLETQNNNVAACK-FYEKCGFV 158
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 40 MTTDPLCRIRFYAVHVMLVAELRENGELVGVVRGCIKGVGTKFEGQIV 87
M +DPLC Y HV LV +L N L+G + C +G K + Q +
Sbjct: 147 MASDPLCLTYSYLSHVDLVKDL--NSGLIGALLVCREGSLAKEKTQTL 192
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 40 MTTDPLCRIRFYAVHVMLVAELRENGELVGVVRGCIKGVGTKFEGQIV 87
M +DPLC Y HV LV +L N L+G + C +G K + Q +
Sbjct: 148 MASDPLCLTYSYLSHVDLVKDL--NSGLIGALLVCREGSLAKEKTQTL 193
>pdb|4EVY|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4EVY|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4F0Y|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
pdb|4F0Y|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
Length = 166
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 89 LGCILGLRVSPRHRRMGIGFHLVKSVEEW 117
+G + G+ V P HRR G+ L++ E W
Sbjct: 95 VGFLEGIYVLPAHRRSGVATMLIRQAEVW 123
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 31 KNGVALFTNMTTDPLCRIRFYAVHVM-LVAELRENGELVGVVRG 73
+ G+ ++N T P ++ V + +V EL+ENGEL+ ++RG
Sbjct: 61 RQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRG 104
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 31 KNGVALFTNMTTDPLCRIRFYAVHVM-LVAELRENGELVGVVRG 73
+ G+ F+N T P +R V + +V EL++NGEL+ +++G
Sbjct: 59 RQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>pdb|2Q0Y|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_295895.1) From Ralstonia Eutropha Jmp134 At 1.80 A
Resolution
Length = 153
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 88 KLGCILGLRVSPRHRRMGIGFHLVKSVEEWLMRNGAHYTFL-ATEKNN 134
K G IL L V P HR GIG L E G + L ATE
Sbjct: 86 KRGYILNLYVDPSHRERGIGQALXNRAEAEFAERGIAFAVLHATEXGQ 133
>pdb|3DR8|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR8|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR6|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|C Chain C, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
Length = 174
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 34 VALFTNMTTDPLCRIRFYAVHVML---VAELRENGELVGVVRGCIKGVGTKFEGQIVKLG 90
A++ + T D R+ +Y +L V ENG + G G F+G +
Sbjct: 29 AAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYAS---FGDWRSFDG--FRYT 83
Query: 91 CILGLRVSPRHRRMGIGFHLVKSVEEWLMRNGAHYTFLATEKNNVASTNLFTSRCNYMNF 150
+ V P H+ G+G L+ + + R G H E N AS L S + F
Sbjct: 84 VEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVXVAGIESQNAASIRLHHS----LGF 139
Query: 151 SSLFIFVQPVSLSLKVLSQ-DIKIEKLQIDQ 180
+ + Q + +K D+ +LQ+D+
Sbjct: 140 T---VTAQXPQVGVKFGRWLDLTFXQLQLDE 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,644,864
Number of Sequences: 62578
Number of extensions: 392986
Number of successful extensions: 979
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 12
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)