BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044427
(734 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 321/631 (50%), Positives = 413/631 (65%), Gaps = 13/631 (2%)
Query: 75 TTRSWDFMGFSKGKLSSSQ-EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC-TGA 132
TTRSWDF+GF SQ E ++++G+LDTGIWPES SF+D+G SPPP KWKG C T
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 133 NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTA 192
NF CN KIIGAR Y+ D + PRD+ GHGTHT+STAAG V A+ YGL GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 193 RGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFPFEYFEDPIAIG 252
RGGVP ARI+ YKVCW+DGC GVDIIS+S+G P YF D IAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 253 SFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312
SFHA++ GILTSNSAGN GP+ ++ ++ +PW L+VAAS++DRKFV Q +GNG ++ G+S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDI 372
IN+FD YPL+ G D N G + +RFC ++N ++GKIV CE+ +
Sbjct: 241 INTFDNQ--YYPLVSGRDIPN--TGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 296
Query: 373 L-AVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKD 431
+++G ++ S D A SYPLP++++ + L YI S P ATI T +
Sbjct: 297 FKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILN 356
Query: 432 AMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
A AP VVSFSSRGPN T D++KPDI+ PGV+ILA+W VAP R+ FNIISG
Sbjct: 357 ASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISG 413
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
TSMSCPH +G A YVK +P WSP++IKSALMTTA M++R EFAYGSGH+NP +A
Sbjct: 414 TSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKA 473
Query: 552 IDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIE 611
+ PGLVYDA E DYV FLC QGYNT +R+ITGD S+ C S GR WDLNYPSF L++
Sbjct: 474 VRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA-CTSGNTGRVWDLNYPSFGLSVS 532
Query: 612 DGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGP 671
Q F RT+T+V STY P +++ V P LSF+ +G++KSFT+ V G
Sbjct: 533 PSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS 592
Query: 672 KIAQQPIMSGAIVWEDGVHQVRSPVVIYNIL 702
+ ++S ++VW DGVH VRSP+ I +++
Sbjct: 593 --IKGFVVSASLVWSDGVHYVRSPITITSLV 621
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 355 bits (911), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 248/663 (37%), Positives = 363/663 (54%), Gaps = 52/663 (7%)
Query: 75 TTRSWDFMGF--SKGKLSSSQEGS-VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICT- 130
TT + DF+ S G +S G VI+ +LD+GIWPESASF D G+ P +WKGIC
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 131 GANFT---CNNKIIGARYYN-----SENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHA 182
G F CN K+IGA Y+N ++ +T +S RD++GHGTH +S AG
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNIT-MNSARDTDGHGTHCASITAGNFAKGV 119
Query: 183 SYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFPF 242
S++G A GTARG P AR+++YK +++G GVD+IS+S G F
Sbjct: 120 SHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRF-I 178
Query: 243 EYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVL 302
+ED I+I SF AM G+L S SAGN GP S++N +PW L VA+ DR F L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 303 GNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSY--KVEGKI 360
GNG+ G S+ P+I+ ++ C+++ L S E I
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSD------------CSSEELLSQVENPENTI 286
Query: 361 VFCESLLDGSDILAVNGLGTIMADSVFTD-----LAFSYPLPATLISKENGQDILDYIRS 415
V C+ D SD + + + A ++ + ++P P +++K+ G+ +++Y+++
Sbjct: 287 VICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKN 346
Query: 416 TEYPIATIMFGETWKDAM-APKVVSFSSRGPNPITVDILKPDITAPGVDILASWSP-VAP 473
+ P ATI F ET+ D AP V + S+RGP+ + I KPDI APGV ILA++ P V
Sbjct: 347 SVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFA 406
Query: 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRK 533
S+ S + + SGTSM+ PHA+G AA +KAAHP WSPS+I+SA+MTTA +D+ +
Sbjct: 407 TSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTR 466
Query: 534 Q--EDLE-------FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITG 584
+ +D + G+GH++P +A+DPGLVYDAT DYVN LC + + I
Sbjct: 467 KPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR 526
Query: 585 DNSSVCNSTEPGRAWDLNYPSF-SLAIEDGQ--PIYGVFTRTVTNVGSPNSTYTVRPYMP 641
++S N + P + DLNYPSF +L +G + F RTVTNVG +TY + P
Sbjct: 527 SSAS-HNCSNP--SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAP 583
Query: 642 ASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVW--EDGVHQVRSPVVIY 699
+ ++ V PQ L F E++S+T+ + Q G+I W ++G H VRSP+V
Sbjct: 584 KNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
Query: 700 NIL 702
I+
Sbjct: 644 PII 646
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 16/119 (13%)
Query: 437 VVSFSSRGPNPITVD-ILKPDITAPGVDILA---SWSPVAPPSLDPEDTRSVSFNIISGT 492
+ FSSRGP T D LKP++ APG I+A S + + P D + GT
Sbjct: 309 ITDFSSRGP---TADNRLKPEVVAPGNWIIAARASGTSMGQPIND-------YYTAAPGT 358
Query: 493 SMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
+M+ PH +G AA + AHP+W+P +K+AL+ TA ++ + E + AYG+G +N +A
Sbjct: 359 AMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV--KPDEIADIAYGAGRVNAYKA 415
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXX 218
+P D GHGTH +S AAG + G +G P A++ KV G
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 219 X-----XXXXXXXXGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD 273
G+ +I++SLGS + D ++ +A G++ +AGNSGP+
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSD-GTDSLSQAVNNAWDAGLVVVVAAGNSGPN 284
Query: 274 PYSVSNFAPWTLTVAASSIDR 294
Y+V + A + + ++D+
Sbjct: 285 KYTVGSPAAASKVITVGAVDK 305
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIXSTL---------PGNK----YGAYSGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT Y+ DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS-------FYYGKGLIN 269
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 167/435 (38%), Gaps = 94/435 (21%)
Query: 164 EGHGTHTSSTAAGREVPHASY-YGLAEGTARGGVPNARISMYKVCWSDGCX--XXXXXXX 220
+ HGTH S +G Y L G +P A++ + +V +G
Sbjct: 95 QEHGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVNGLADYARNYAQA 149
Query: 221 XXXXXXXGVDIISVSLG-SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSG-------- 271
G +I++S G + + D +A G+ SAGN
Sbjct: 150 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 209
Query: 272 -----PDPYSVSNF---APWTLTVAASSIDRKFVAQAVLG----NGITYPGLSINSFDLN 319
PD Y V A TLTVA+ S D++ A + P LS N F+ N
Sbjct: 210 PLADHPD-YGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPN 268
Query: 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCES-LLDGSDILA---- 374
A +Y A AN R D V+GKI E +D D +A
Sbjct: 269 K----------AYDY-AYAN----RGMKEDDFKD--VKGKIALIERGDIDFKDKIANAKK 311
Query: 375 VNGLGTIMADSVFTDLAFSYP----LPATLISKENGQDILDYIRSTEYPIATIMFGETWK 430
+G ++ D+ P +PA IS+++G + D + T I F T K
Sbjct: 312 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKT------ITFNATPK 365
Query: 431 ---DAMAPKVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486
A K+ FSS G +T D +KPDI APG DIL+S + + +
Sbjct: 366 VLPTASDTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVA-------------NNKY 409
Query: 487 NIISGTSMSCPHASGSAAYVK----AAHPNWSPSS----IKSALMTTAYVMDSRKQEDLE 538
+SGTSMS P +G ++ +P+ +PS K LM++A + ++ E
Sbjct: 410 AKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATAL----YDEDE 465
Query: 539 FAYGSGHINPAQAID 553
AY S A A+D
Sbjct: 466 KAYFSPRQQGAGAVD 480
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIXSTL---------PGNK----YGAYSGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 440 FSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHA 499
FSS GP + D+ APGV I ++ + +SGTSM+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTSMASPHV 218
Query: 500 SGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TA + F YG G IN
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKLGD------SFYYGKGLIN 260
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 179 SFSSVGP--------ELDVMAPGVSICSTL---------PGN----KYGAKSGTSMASPH 217
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I+++ P + + SGT+M+ PH
Sbjct: 179 SFSSVGP--------ELDVMAPGVSIVSTL---------PGN----KYGAKSGTAMASPH 217
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I+++ P + + SGT+M+ PH
Sbjct: 179 SFSSVGP--------ELDVMAPGVSIVSTL---------PGN----KYGAKSGTAMASPH 217
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I WS + P + + SGT M+ PH
Sbjct: 176 SFSSVGP--------ELDVMAPGVSI---WSTL------PGN----KYGAKSGTXMASPH 214
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 215 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 257
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS-------FYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS-------FYYGKGLIN 269
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 179 SFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASPH 217
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L T + + F YG G IN
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGN------SFYYGKGLIN 260
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAKSGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 440 FSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHA 499
FSS GP + D+ APGV I ++ + +SGT+M+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTAMASPHV 218
Query: 500 SGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TA + F YG G IN
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKLGD------SFYYGKGLIN 260
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGN----KYGAYNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGT M+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYSGTXMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGT M+ PH
Sbjct: 179 SFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTXMASPH 217
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 260
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGT M+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYSGTXMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + SGT M+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAKSGTXMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 19/96 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GTSM+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
I++ L TA + S YGSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVNAEAA 267
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GTSM+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
I++ L TA + S YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GTSM+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
I++ L TA + S YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 19/96 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GTSM+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
I++ L TA + S YGSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVNAEAA 267
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXX 218
S +D GHGTH + T A + G+ G P+A + KV +DG
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGV-----LGVAPSAELYAVKVLGADGRGAISSI 105
Query: 219 XXXXX-XXXXGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV 277
G+ + ++SLGS P E + A G+L ++GNSG S+
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAS--SI 159
Query: 278 SNFAPWTLTVAASSID----RKFVAQAVLGNGITYPGLSINS 315
S A + +A + D R +Q G I PG+++ S
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQS 201
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GTSM+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
I++ L TA + S YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GTSM+ PH
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GTSM+ PH
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 268
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GTSM+ PH
Sbjct: 188 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 227 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GTSM+ PH
Sbjct: 188 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 227 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 269
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GTSM+ PH
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 268
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GTSM+ PH
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 268
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GT M+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGN----KYGAYNGTXMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GT M+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGN----KYGAYNGTXMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 26/124 (20%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVS--FNIISGTSMSC 496
SFS+ G VD+ D+ APG DIL++ +D R VS ++ ++GTSM+
Sbjct: 236 SFSNYG-----VDV---DLAAPGQDILST--------VDSGTRRPVSDAYSFMAGTSMAT 279
Query: 497 PHASGSAAYVKAA----HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
PH SG AA V +A + N +P+ +K L++T + R L+ A GSG ++ A+
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRALGSGIVDAEAAV 335
Query: 553 DPGL 556
+ L
Sbjct: 336 NSVL 339
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 26/124 (20%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVS--FNIISGTSMSC 496
SFS+ G VD+ D+ APG DIL++ +D R VS ++ ++GTSM+
Sbjct: 236 SFSNYG-----VDV---DLAAPGQDILST--------VDSGTRRPVSDAYSFMAGTSMAT 279
Query: 497 PHASGSAAYVKAA----HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
PH SG AA V +A + N +P+ +K L++T + R L+ A GSG ++ A+
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRALGSGIVDAEAAV 335
Query: 553 DPGL 556
+ L
Sbjct: 336 NSVL 339
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 26/124 (20%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVS--FNIISGTSMSC 496
SFS+ G VD+ D+ APG DIL++ +D R VS ++ ++GTSM+
Sbjct: 236 SFSNYG-----VDV---DLAAPGQDILST--------VDSGTRRPVSDAYSFMAGTSMAT 279
Query: 497 PHASGSAAYVKAA----HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
PH SG AA V +A + N +P+ +K L++T + R L+ A GSG ++ A+
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRALGSGIVDAEAAV 335
Query: 553 DPGL 556
+ L
Sbjct: 336 NSVL 339
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GT M+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
I++ L TA + S YGSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVNAEAA 267
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GT M+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
I++ L TA + S YGSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVNAEAA 267
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GT M+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
I++ L TA + S YGSG +N A
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVNAEAA 267
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GT M+ PH +G+AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
I++ L TA + S YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXX 218
S +D GHGTH + T A + + G+ G P+A + KV + G
Sbjct: 55 STQDGNGHGTHVAGTIAALD----NSIGV-----LGVAPSAELYAVKVLGASGSGAISSI 105
Query: 219 XXXXX-XXXXGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV 277
G+ + ++SLGS P E + A G+L ++GNSG S+
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAG--SI 159
Query: 278 SNFAPWTLTVAASSID----RKFVAQAVLGNGITYPGLSINS 315
S A + +A + D R +Q G I PG+++ S
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQS 201
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 29/110 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTS + PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSXASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALM-TTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPNW+ + ++S+L TT + DS F YG G IN
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS-------FYYGKGLIN 269
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P +T + ++GT M+ PH
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTXMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HPN S S +++ L +TA + S F YG G IN
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLIN 268
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 27/114 (23%)
Query: 434 APKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTS 493
A + SFSS G + D+ APGV I ++ P T + +GTS
Sbjct: 183 ANQRASFSSAGS--------ELDVMAPGVSIQSTL---------PGGT----YGAYNGTS 221
Query: 494 MSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
M+ PH +G+AA + + HP W+ + ++ L +TA + S F YG G IN
Sbjct: 222 MATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGS------SFYYGKGLIN 269
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APGV++ +++ P T + ++GTSM+ PH +G AA VK +P+WS
Sbjct: 191 DIVAPGVNVQSTY---------PGST----YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
I++ L TA + + YGSG +N A
Sbjct: 238 VQIRNHLKNTATGLGNTNL------YGSGLVNAEAA 267
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 436 KVVSFSSRGPNPITVD--ILKPD--ITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
+V FSSRG D I K D I+APG + ++W D + ISG
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW-------FDG------GYATISG 247
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMD 530
TSM+ PHA+G AA + A P S ++ L T A V D
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 37/197 (18%)
Query: 84 FSKGKLSSSQEGSVI-IGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIG 142
++ L+S+ G+ I I +LDTG+ + N LS + K G NFT N
Sbjct: 14 YNNSNLTSTSGGAGINIAVLDTGV-----NTNHPDLSNNVEQCKDFTVGTNFTDN----- 63
Query: 143 ARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARIS 202
S D +GHGTH + +A + YG+A P A +
Sbjct: 64 ----------------SCTDRQGHGTHVAGSALANGGTGSGVYGVA--------PEADLW 99
Query: 203 MYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFPFEYFEDPIAIGSF--HAMKYG 260
YKV DG ++ + + + I + +A G
Sbjct: 100 AYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAYDKG 159
Query: 261 ILTSNSAGNSGPDPYSV 277
+L +AGNSGP P S+
Sbjct: 160 VLIIAAAGNSGPKPGSI 176
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 23/112 (20%)
Query: 436 KVVSFSSRGPNPITVDIL----KPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
+V +SSRG D + +I+APG + ++W + +N ISG
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISG 248
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGS 543
TSM+ PH SG AA + A +P+ S + ++S L A K D++ YG+
Sbjct: 249 TSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA------KSVDIKGGYGA 294
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 52/138 (37%), Gaps = 27/138 (19%)
Query: 149 ENIYEVTDF--------HSPRDSEGHGTHTSSTA-AGREVPHASYYGLAEGTARGGVPNA 199
N+ + DF +S D GHGTH + TA A A YG+A P+A
Sbjct: 46 NNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDA 97
Query: 200 RISMYKVC------WSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFPFEYFEDPIAIGS 253
+ YKV +SD IIS+SLGS +
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAV---- 153
Query: 254 FHAMKYGILTSNSAGNSG 271
+A G+L +AGNSG
Sbjct: 154 NYAYSKGVLIVAAAGNSG 171
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI APG I +SW T + + N ISGTSM+ PH +G AA +PN SP
Sbjct: 198 DIYAPGSSITSSWY-----------TSNSATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 516 SSIKSALMTTA 526
+ + + L T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 23/112 (20%)
Query: 436 KVVSFSSRGPNPITVDIL----KPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
+V +SSRG D + +I+APG + ++W + +N ISG
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISG 248
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGS 543
T M+ PH SG AA + A +P+ S + ++S L A K D++ YG+
Sbjct: 249 TXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA------KSVDIKGGYGA 294
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 52/138 (37%), Gaps = 27/138 (19%)
Query: 149 ENIYEVTDF--------HSPRDSEGHGTHTSSTA-AGREVPHASYYGLAEGTARGGVPNA 199
N+ + DF +S D GHGTH + TA A A YG+A P+A
Sbjct: 46 NNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDA 97
Query: 200 RISMYKVC------WSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFPFEYFEDPIAIGS 253
+ YKV +SD IIS+SLGS +
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAV---- 153
Query: 254 FHAMKYGILTSNSAGNSG 271
+A G+L +AGNSG
Sbjct: 154 NYAYSKGVLIVAAAGNSG 171
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
D+ APGV I ++ P T + +GT M+ PH +G+AA + + HP W+
Sbjct: 197 DVMAPGVSIQSTL---------PGGT----YGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+ ++ L +TA + + F YG G IN
Sbjct: 244 AQVRDRLESTATYLGN------SFYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + D+ APGV I ++ P T + +GT M+ PH
Sbjct: 188 SFSSAGS--------ELDVMAPGVSIQSTL---------PGGT----YGAYNGTCMATPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + HP W+ + ++ L +TA + + F YG G IN
Sbjct: 227 VAGAAALILSKHPTWTNAQVRDRLESTATYLGN------SFYYGKGLIN 269
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 437 VVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
V FSSRGP T D +KPD+ APG IL++ S +AP S + S + + GTSM+
Sbjct: 202 VAQFSSRGP---TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMA 257
Query: 496 CPHASGSAA-----YVKAAHPNWSPSSIKSALMTTA 526
P +G+ A +VK PS +K+AL+ A
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 27/109 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APGV + +++ P +T + ++GTSM+ PH
Sbjct: 187 SFSSVGS--------ELEVMAPGVSVYSTY---------PSNT----YTSLNGTSMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHIN 547
+G+AA + + +P S S +++ L +TA + F YG G IN
Sbjct: 226 VAGAAALILSKYPTLSASQVRNRLSSTATNLGD------SFYYGKGLIN 268
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 39/133 (29%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 497 PHASGSAAYVKAAH-------------PNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGS 543
PH SG A ++AA+ + S ++++ L TA D+ + YG
Sbjct: 328 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA---DALGPTGWDADYGY 384
Query: 544 GHINPAQAIDPGL 556
G + A A+ L
Sbjct: 385 GVVRAALAVQAAL 397
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 23/75 (30%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 212 NIASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMA 248
Query: 496 CPHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 249 TPHVSGVVALIQAAY 263
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 23/74 (31%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 497 PHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 23/74 (31%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 497 PHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 23/74 (31%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 327
Query: 497 PHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 23/74 (31%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMAT 324
Query: 497 PHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 325 PHVSGVVALIQAAY 338
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 23/75 (30%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMA 246
Query: 496 CPHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 247 TPHVSGVVALIQAAY 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 23/75 (30%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMA 257
Query: 496 CPHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 258 TPHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 23/75 (30%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT+M+
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTAMA 257
Query: 496 CPHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 258 TPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 23/75 (30%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT M+
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTXMA 246
Query: 496 CPHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 247 TPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 23/75 (30%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
+ SFS+R +P+++APGVDIL+++ P+D S+ + GT M+
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTY---------PDD----SYETLMGTCMA 246
Query: 496 CPHASGSAAYVKAAH 510
PH SG A ++AA+
Sbjct: 247 TPHVSGVVALIQAAY 261
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 414 RSTEYPIATIMFGETWKDAMAPKVVSFSSRG----PNPITVDILKPDITAPGVDILASWS 469
+ + YP I + K A A ++ +S+ NP VD DIT P V + +
Sbjct: 285 QGSSYP--EINSTKACKTAGAKGIIVYSNSALPGLQNPFLVD-ANSDITVPSVSVDRATG 341
Query: 470 PVAPPSLDPEDTRSVSFN----IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525
L T S N +GTSM+ PH SG A V + HP S S +++AL T
Sbjct: 342 LALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNAT 401
Query: 526 AYVMDSRKQEDLEFAYG 542
A + S D + YG
Sbjct: 402 ADDL-SVAGRDNQTGYG 417
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 38/169 (22%)
Query: 397 PATLISKENGQDILDYIRSTEYPIATIMFGETWK---DAMAPKVVSFSSRGPNPITVD-I 452
PA IS+++G + D P TI F T K A K+ FSS G +T D
Sbjct: 329 PAAFISRKDGLLLKDN------PQKTITFNATPKVLPTASGTKLSRFSSWG---LTADGN 379
Query: 453 LKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVK----A 508
+KPDI APG DIL+S + + + +SGTS S P +G ++
Sbjct: 380 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSXSAPLVAGIXGLLQKQYET 426
Query: 509 AHPNWSPSS----IKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+P+ +PS K L ++A + ++ E AY S A A+D
Sbjct: 427 QYPDXTPSERLDLAKKVLXSSATAL----YDEDEKAYFSPRQQGAGAVD 471
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 437 VVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
V FSSRGP T D +KPD+ APG IL++ S +AP S + S + GTS +
Sbjct: 202 VAQFSSRGP---TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYXGGTSXA 257
Query: 496 CPHASGSAA-----YVKAAHPNWSPSSIKSALMTTA 526
P +G+ A +VK PS +K+AL+ A
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI PG DIL++W TRS ISGTSM+ PH +G AAY+ +
Sbjct: 200 DIFGPGTDILSTWIG--------GSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 516 SSIKSALMTTAYVMDSRKQEDLE 538
S+ + Y+ D+ + DL
Sbjct: 247 SACR-------YIADTANKGDLS 262
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 155 TDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGV 196
T ++S RD GHGTH + T R YG+A+ T GV
Sbjct: 58 TYYYSSRDGNGHGTHCAGTVGSRT------YGVAKKTQLFGV 93
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
D+ APG I ++W DT + + N GTSM+ PH +G AA +P+ +P
Sbjct: 196 DLFAPGASIPSAWYT--------SDTATQTLN---GTSMATPHVAGVAALYLEQNPSATP 244
Query: 516 SSIKSALMTTA 526
+S+ SA++ A
Sbjct: 245 ASVASAILNGA 255
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 20/83 (24%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI PG IL++W TRS ISGTSM+ PH +G AAY+ +
Sbjct: 200 DIFGPGTSILSTWIG--------GSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 516 SSIKSALMTTAYVMDSRKQEDLE 538
S+ + Y+ D+ + DL
Sbjct: 247 SACR-------YIADTANKGDLS 262
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 155 TDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGV 196
T ++S RD GHGTH + T R YG+A+ T GV
Sbjct: 58 TYYYSSRDGNGHGTHCAGTVGSRT------YGVAKKTQLFGV 93
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 20/83 (24%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
DI PG IL++W TRS ISGTSM+ PH +G AAY+ +
Sbjct: 200 DIFGPGTSILSTWIG--------GSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 516 SSIKSALMTTAYVMDSRKQEDLE 538
S+ + Y+ D+ + DL
Sbjct: 247 SACR-------YIADTANKGDLS 262
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527
T +++ GTSM+ PH +G A + PN P I+ L TA+
Sbjct: 369 TNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF 415
>pdb|2HG0|A Chain A, Structure Of The West Nile Virus Envelope Glycoprotein
Length = 408
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 100 GLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI-YEVTDF- 157
G++D G W KG I T A F C+ K IG R ENI YEV F
Sbjct: 95 GVVDRG-WGNGCGLFGKG---------SIDTCAKFACSTKAIG-RTILKENIKYEVAIFV 143
Query: 158 HSPRDSEGHG---THTSSTAAGR--EVPHASYYGLAEG 190
H P E HG T +T AGR P A Y L G
Sbjct: 144 HGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLG 181
>pdb|3IYW|A Chain A, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|B Chain B, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|C Chain C, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
Length = 403
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 100 GLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI-YEVTDF- 157
G++D G W KG I T A F C+ K IG R ENI YEV F
Sbjct: 95 GVVDRG-WGNGCGLFGKG---------SIDTCAKFACSTKAIG-RTILKENIKYEVAIFV 143
Query: 158 HSPRDSEGHG---THTSSTAAGR--EVPHASYYGLAEG 190
H P E HG T +T AGR P A Y L G
Sbjct: 144 HGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLG 181
>pdb|2OF6|A Chain A, Structure Of Immature West Nile Virus
pdb|2OF6|B Chain B, Structure Of Immature West Nile Virus
pdb|2OF6|C Chain C, Structure Of Immature West Nile Virus
pdb|3IXX|A Chain A, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|B Chain B, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|C Chain C, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3J0B|A Chain A, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|B Chain B, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|C Chain C, Cryo-Em Reconstruction Of West Nile Virus
Length = 400
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 100 GLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI-YEVTDF- 157
G++D G W KG I T A F C+ K IG R ENI YEV F
Sbjct: 95 GVVDRG-WGNGCGLFGKG---------SIDTCAKFACSTKAIG-RTILKENIKYEVAIFV 143
Query: 158 HSPRDSEGHG---THTSSTAAGR--EVPHASYYGLAEG 190
H P E HG T +T AGR P A Y L G
Sbjct: 144 HGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLG 181
>pdb|3I50|E Chain E, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein In Complex With The E53 Antibody Fab
Length = 402
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 100 GLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI-YEVTDF- 157
G++D G W KG I T A F C+ K IG R ENI YEV F
Sbjct: 95 GVVDRG-WGNGCGLFGKG---------SIDTCAKFACSTKAIG-RTILKENIKYEVAIFV 143
Query: 158 HSPRDSEGHG---THTSSTAAGR--EVPHASYYGLAEG 190
H P E HG T +T AGR P A Y L G
Sbjct: 144 HGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLG 181
>pdb|2I69|A Chain A, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein
Length = 403
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 100 GLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI-YEVTDF- 157
G++D G W KG I T A F C+ K IG R ENI YEV F
Sbjct: 95 GVVDRG-WGNGCGLFGKG---------SIDTCAKFACSTKAIG-RTILKENIKYEVAIFV 143
Query: 158 HSPRDSEGHG---THTSSTAAGR--EVPHASYYGLAEG 190
H P E HG T +T AGR P A Y L G
Sbjct: 144 HGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLG 181
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 28/135 (20%)
Query: 153 EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGC 212
E D H D +GHGT S + A G G PN + +MY+V S
Sbjct: 164 ETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKT 211
Query: 213 XXXXXXXXXXXXXXXGVDIISVSLGS--------------DFPFEYFEDPIAIGSFHAMK 258
G +I++S+GS D EY D + +A K
Sbjct: 212 ELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEY--DALQKAINYAKK 269
Query: 259 YGILTSNSAGNSGPD 273
+ +AGN G D
Sbjct: 270 KKSIVVAAAGNDGID 284
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 457 ITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH----PN 512
+ APG +IL S + P RS S+ + +GTSM+ PH SG AA V +A
Sbjct: 247 LAAPGTNIL---STIDVGQAGP--VRS-SYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 513 WSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+PS + L+ T SR L+ GSG ++ A++
Sbjct: 301 LTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVN 337
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 28/135 (20%)
Query: 153 EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGC 212
E D H D +GHGT S + A G G PN + +MY+V S
Sbjct: 188 ETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKT 235
Query: 213 XXXXXXXXXXXXXXXGVDIISVSLGS--------------DFPFEYFEDPIAIGSFHAMK 258
G +I++S+GS D EY D + +A K
Sbjct: 236 ELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEY--DALQKAINYAKK 293
Query: 259 YGILTSNSAGNSGPD 273
+ +AGN G D
Sbjct: 294 KKSIVVAAAGNDGID 308
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 457 ITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH----PN 512
+ APG +IL S + P RS S+ + +GTSM+ PH SG AA V +A
Sbjct: 247 LAAPGTNIL---STIDVGQAGP--VRS-SYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 513 WSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+PS + L+ T + R L+ GSG ++ A++
Sbjct: 301 LTPSELSDILVRTTSRFNGR----LDRGLGSGIVDANAAVN 337
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 478 PEDTRSVSFNIISGTSMSCPHASGSAAY----VKAAHPNWSPSSIKSALMTTAYVMDSRK 533
P+ T S S + +GTS + PH +G+ A +K + +SP SIK A+ TA +
Sbjct: 448 PQFTXSKS-QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD 506
Query: 534 QEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYN 575
FA G G +N +A + + ++ + + F + G N
Sbjct: 507 ----PFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 13/51 (25%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYV 506
DI APG +IL++W + N ISGTSM+ PH G AY+
Sbjct: 203 DIFAPGSNILSTW-------------IGGTTNTISGTSMATPHIVGLGAYL 240
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQ 534
+++GTS + P SG+ A + +A+P+ S ++ L +A +D++ Q
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQ 377
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYV 506
DI APG I ++W + + N ISGTSM+ PH +G AAY+
Sbjct: 201 DIFAPGTSITSTW--IGGRT-----------NTISGTSMATPHIAGLAAYL 238
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
D+ APGVDI+++ + + +SGTSM+ PH +G AA + + N
Sbjct: 202 DVVAPGVDIVSTIT-------------GNRYAYMSGTSMASPHVAGLAALLASQGRN--N 246
Query: 516 SSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
I+ A+ TA D F Y G IN A+
Sbjct: 247 IEIRQAIEQTA---DKISGTGTYFKY--GRINSYNAV 278
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 154 VTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGC- 212
V + + P D HGTH + AA E +A+ G+A G PN RI + +G
Sbjct: 60 VDNDYDPMDLNNHGTHVAGIAAA-ETNNAT--GIA-----GMAPNTRILAVRALDRNGSG 111
Query: 213 XXXXXXXXXXXXXXXGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGP 272
G ++I++SLG D E+ + +A G + +AGN+G
Sbjct: 112 TLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNG- 166
Query: 273 DPYSVSNFAP--WTLTVAASSIDR 294
S + F P + +A ++D+
Sbjct: 167 ---SSTTFEPASYENVIAVGAVDQ 187
>pdb|1NTL|A Chain A, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1NTL|B Chain B, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
Length = 551
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 555 GLVYDATEVDY---VNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYP 604
GLV+ T +++ +N+ C QGY ++ G +S+VC T+ WD P
Sbjct: 73 GLVHVHTGIEFGSRINYTCNQGY------RLIGSSSAVCVITDQSVDWDTEAP 119
>pdb|4FG0|A Chain A, Structure Of The St. Louis Encephalitis Virus Envelope
Protein In The Fusogenic Trimer Conformation
Length = 407
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 128 ICTGANFTCNNKIIGARYYNSENIYEVTDF-HSPRDSEGHGTH 169
I T A FTC NK G YEV F H DS HG +
Sbjct: 113 IDTCAKFTCKNKATGKTILRENIKYEVAIFVHGSTDSTSHGNY 155
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 636 VRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVT-GPKIAQQPIMSGAIVWEDGVHQ 691
V P +PA + + P+SLSF + S +++ G K+ Q+P+ S + DG+ Q
Sbjct: 252 VSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQ 308
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 467 SWSPVAPPSLDPEDTRSVS-FNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525
SW VA P T S + +SGTSM+ PH +G A + A S S+I++A+ T
Sbjct: 198 SWVDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENT 255
Query: 526 A 526
A
Sbjct: 256 A 256
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
D+ APG I ++W + ISGTSM+ PH +G AA + +P
Sbjct: 196 DLFAPGSQIKSAW-------------YDGGYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 516 SSIKSALMTTA---YVMDSR 532
+ L + A V D+R
Sbjct: 243 LQLTGLLNSRASENKVSDTR 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,089,904
Number of Sequences: 62578
Number of extensions: 1001179
Number of successful extensions: 2608
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 221
length of query: 734
length of database: 14,973,337
effective HSP length: 106
effective length of query: 628
effective length of database: 8,340,069
effective search space: 5237563332
effective search space used: 5237563332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)