Query 044427
Match_columns 734
No_of_seqs 381 out of 2821
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 3.9E-51 8.5E-56 437.7 30.8 292 71-527 1-307 (307)
2 cd07478 Peptidases_S8_CspA-lik 100.0 4.5E-50 9.7E-55 447.2 26.1 412 92-544 1-455 (455)
3 PTZ00262 subtilisin-like prote 100.0 1.4E-49 3E-54 442.8 22.3 292 82-558 301-618 (639)
4 cd05562 Peptidases_S53_like Pe 100.0 5.7E-49 1.2E-53 411.8 25.4 271 91-553 1-274 (275)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 3.9E-48 8.5E-53 402.4 25.9 243 88-530 1-254 (255)
6 cd07497 Peptidases_S8_14 Pepti 100.0 1E-47 2.2E-52 408.3 25.4 287 94-526 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 5.7E-47 1.2E-51 412.7 29.0 308 87-553 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 2.5E-46 5.3E-51 401.6 27.9 285 84-555 2-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.7E-45 3.7E-50 384.5 26.7 248 88-533 3-256 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 4.9E-45 1.1E-49 388.8 30.5 282 94-551 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 4.2E-45 9.2E-50 376.2 25.2 234 97-544 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 1.2E-44 2.7E-49 383.7 26.5 258 95-527 1-291 (291)
13 cd04857 Peptidases_S8_Tripepti 100.0 7.6E-44 1.7E-48 385.5 29.4 220 161-529 182-412 (412)
14 cd07493 Peptidases_S8_9 Peptid 100.0 3.6E-44 7.7E-49 375.2 25.2 244 96-527 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 5.1E-44 1.1E-48 374.6 25.0 247 94-527 1-264 (264)
16 cd07487 Peptidases_S8_1 Peptid 100.0 3.9E-43 8.5E-48 368.0 26.7 257 94-527 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 2.3E-42 5.1E-47 363.8 25.5 262 87-525 2-273 (273)
18 cd04847 Peptidases_S8_Subtilis 100.0 1.1E-42 2.4E-47 369.7 21.2 264 97-527 1-291 (291)
19 cd07490 Peptidases_S8_6 Peptid 100.0 6.9E-42 1.5E-46 356.6 26.4 253 96-527 1-254 (254)
20 cd07484 Peptidases_S8_Thermita 100.0 5.8E-42 1.3E-46 358.4 25.4 246 79-529 13-259 (260)
21 cd04077 Peptidases_S8_PCSK9_Pr 100.0 9.2E-42 2E-46 355.8 25.3 232 87-528 17-255 (255)
22 cd07494 Peptidases_S8_10 Pepti 100.0 9.8E-42 2.1E-46 361.6 23.7 258 80-532 6-288 (298)
23 cd07496 Peptidases_S8_13 Pepti 100.0 2.3E-41 5.1E-46 358.4 26.3 266 96-525 1-285 (285)
24 cd07498 Peptidases_S8_15 Pepti 100.0 3.4E-41 7.3E-46 348.8 23.8 240 97-525 1-242 (242)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 3.6E-41 7.8E-46 358.6 24.7 277 90-527 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 6E-41 1.3E-45 357.2 24.7 260 90-549 3-296 (297)
27 cd07477 Peptidases_S8_Subtilis 100.0 5.9E-40 1.3E-44 336.6 25.0 226 96-525 1-229 (229)
28 cd07473 Peptidases_S8_Subtilis 100.0 9.6E-40 2.1E-44 341.5 26.9 246 95-527 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 3.1E-40 6.7E-45 346.2 22.2 247 83-527 3-277 (277)
30 PF00082 Peptidase_S8: Subtila 100.0 5.3E-41 1.1E-45 355.2 16.0 276 98-553 1-282 (282)
31 cd07491 Peptidases_S8_7 Peptid 100.0 4.6E-40 9.9E-45 339.5 21.0 216 94-509 2-229 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 1.3E-39 2.9E-44 346.7 23.7 151 96-274 1-159 (294)
33 KOG1153 Subtilisin-related pro 100.0 6.5E-40 1.4E-44 340.9 16.3 308 10-527 94-461 (501)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.6E-38 3.4E-43 324.5 24.0 221 96-527 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 6.7E-39 1.4E-43 341.9 17.9 251 82-527 26-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 7.6E-38 1.7E-42 328.0 23.1 243 93-527 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 3.4E-36 7.5E-41 320.4 24.2 338 11-553 61-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.1E-35 2.4E-40 329.5 26.4 356 164-702 310-690 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 8.9E-33 1.9E-37 284.3 17.3 194 160-526 33-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.1E-30 2.4E-35 268.1 25.2 234 97-525 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.7E-23 3.7E-28 238.1 22.1 267 87-553 132-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 3.5E-19 7.6E-24 181.6 6.7 153 87-273 153-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.6E-16 3.4E-21 173.6 14.8 102 190-294 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 98.9 4.8E-09 1E-13 99.3 10.1 110 319-447 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 98.9 7.5E-09 1.6E-13 95.8 10.6 115 300-422 2-125 (126)
46 PF06280 DUF1034: Fn3-like dom 98.7 1.9E-07 4.1E-12 84.5 12.0 80 617-697 9-112 (112)
47 PF05922 Inhibitor_I9: Peptida 98.3 6.9E-07 1.5E-11 75.8 5.6 64 11-74 15-82 (82)
48 KOG3525 Subtilisin-like propro 98.3 2.7E-06 5.8E-11 94.3 10.0 160 82-274 20-188 (431)
49 COG4934 Predicted protease [Po 98.3 6.7E-06 1.4E-10 98.1 13.0 96 191-289 287-395 (1174)
50 cd04816 PA_SaNapH_like PA_SaNa 98.2 4.4E-06 9.6E-11 76.8 7.5 79 343-421 29-120 (122)
51 PF02225 PA: PA domain; Inter 98.0 8.3E-06 1.8E-10 72.1 5.0 71 343-413 19-101 (101)
52 cd02122 PA_GRAIL_like PA _GRAI 97.9 3E-05 6.6E-10 72.6 8.2 80 343-422 44-137 (138)
53 cd04818 PA_subtilisin_1 PA_sub 97.9 2.2E-05 4.7E-10 71.7 7.1 79 343-422 27-117 (118)
54 cd02129 PA_hSPPL_like PA_hSPPL 97.9 3.2E-05 7E-10 70.1 7.7 74 343-416 30-115 (120)
55 cd02130 PA_ScAPY_like PA_ScAPY 97.9 7.7E-05 1.7E-09 68.5 10.2 78 344-422 32-121 (122)
56 cd02127 PA_hPAP21_like PA_hPAP 97.8 5.7E-05 1.2E-09 68.8 7.9 80 343-423 21-116 (118)
57 cd00538 PA PA: Protease-associ 97.8 4.4E-05 9.5E-10 70.3 7.3 79 343-421 30-124 (126)
58 cd02124 PA_PoS1_like PA_PoS1_l 97.8 0.00017 3.6E-09 66.8 10.1 78 343-421 41-127 (129)
59 cd02132 PA_GO-like PA_GO-like: 97.7 0.00015 3.2E-09 68.2 9.3 76 343-421 48-137 (139)
60 cd02126 PA_EDEM3_like PA_EDEM3 97.7 8.6E-05 1.9E-09 68.6 7.3 77 343-420 27-123 (126)
61 cd02125 PA_VSR PA_VSR: Proteas 97.7 0.00012 2.7E-09 67.5 7.3 80 343-422 22-126 (127)
62 cd04813 PA_1 PA_1: Protease-as 97.6 0.00013 2.9E-09 66.2 6.5 73 342-416 26-112 (117)
63 cd04817 PA_VapT_like PA_VapT_l 97.4 0.00028 6.1E-09 65.9 6.5 66 351-416 50-134 (139)
64 cd04819 PA_2 PA_2: Protease-as 97.4 0.0013 2.8E-08 60.9 10.6 83 320-417 22-121 (127)
65 cd02123 PA_C_RZF_like PA_C-RZF 97.4 0.00043 9.4E-09 66.2 7.1 76 343-418 50-142 (153)
66 PF14874 PapD-like: Flagellar- 96.5 0.06 1.3E-06 47.5 12.5 80 617-699 21-100 (102)
67 cd04815 PA_M28_2 PA_M28_2: Pro 96.3 0.011 2.3E-07 55.2 7.2 70 352-421 34-132 (134)
68 PF06030 DUF916: Bacterial pro 95.4 0.25 5.4E-06 45.2 11.7 78 605-686 18-119 (121)
69 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.094 2E-06 43.9 7.1 58 617-674 6-64 (78)
70 PF11614 FixG_C: IG-like fold 94.6 0.37 8.1E-06 43.8 10.5 59 615-674 30-88 (118)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 94.2 0.14 3E-06 48.6 6.9 82 321-411 20-130 (151)
72 cd02128 PA_TfR PA_TfR: Proteas 93.8 0.16 3.5E-06 49.6 6.7 63 353-415 51-155 (183)
73 cd04820 PA_M28_1_1 PA_M28_1_1: 93.5 0.14 3E-06 47.8 5.5 58 321-387 22-96 (137)
74 cd04814 PA_M28_1 PA_M28_1: Pro 92.7 0.2 4.3E-06 47.1 5.2 59 320-387 19-100 (142)
75 COG1470 Predicted membrane pro 91.0 1.9 4E-05 47.6 10.9 80 606-687 389-469 (513)
76 PF00345 PapD_N: Pili and flag 86.7 7 0.00015 35.5 10.3 67 618-686 16-89 (122)
77 KOG2442 Uncharacterized conser 86.2 2.1 4.6E-05 47.3 7.3 70 353-422 91-174 (541)
78 COG1470 Predicted membrane pro 86.2 8.2 0.00018 42.8 11.8 70 617-687 285-360 (513)
79 cd02131 PA_hNAALADL2_like PA_h 85.0 0.76 1.6E-05 43.3 2.9 34 354-387 37-75 (153)
80 cd02121 PA_GCPII_like PA_GCPII 84.7 1.3 2.8E-05 44.8 4.7 35 353-387 67-106 (220)
81 TIGR02745 ccoG_rdxA_fixG cytoc 83.5 5.2 0.00011 44.9 9.2 57 615-672 345-401 (434)
82 PF07718 Coatamer_beta_C: Coat 83.2 8.7 0.00019 35.8 8.9 70 615-686 68-138 (140)
83 KOG3920 Uncharacterized conser 76.2 5.1 0.00011 37.6 5.0 82 343-425 74-173 (193)
84 KOG4628 Predicted E3 ubiquitin 75.8 8.7 0.00019 41.4 7.4 75 343-417 62-151 (348)
85 PF00635 Motile_Sperm: MSP (Ma 74.9 25 0.00055 30.8 9.3 53 617-672 19-71 (109)
86 PF12690 BsuPI: Intracellular 72.3 11 0.00024 31.9 5.8 56 618-674 2-74 (82)
87 cd04821 PA_M28_1_2 PA_M28_1_2: 62.3 8.7 0.00019 36.8 3.6 37 350-386 42-102 (157)
88 PF00927 Transglut_C: Transglu 60.5 56 0.0012 28.8 8.4 55 617-673 16-79 (107)
89 PF07610 DUF1573: Protein of u 59.2 34 0.00073 25.2 5.6 44 622-668 2-45 (45)
90 PF07705 CARDB: CARDB; InterP 54.6 1.1E+02 0.0023 25.9 9.2 51 617-671 20-72 (101)
91 smart00635 BID_2 Bacterial Ig- 49.6 53 0.0011 27.4 6.0 40 645-689 4-43 (81)
92 cd00407 Urease_beta Urease bet 44.7 58 0.0013 28.5 5.4 49 618-667 20-82 (101)
93 PF04744 Monooxygenase_B: Mono 44.0 3.1E+02 0.0067 30.0 11.8 67 617-687 264-362 (381)
94 PF05506 DUF756: Domain of unk 43.5 1.2E+02 0.0025 25.8 7.3 54 618-680 20-73 (89)
95 PRK13203 ureB urease subunit b 43.3 58 0.0013 28.6 5.2 49 618-667 20-82 (102)
96 TIGR00192 urease_beta urease, 42.6 64 0.0014 28.3 5.3 49 618-667 20-82 (101)
97 PRK15098 beta-D-glucoside gluc 40.5 70 0.0015 38.9 7.4 54 617-673 668-730 (765)
98 PRK13202 ureB urease subunit b 39.8 62 0.0013 28.5 4.9 49 618-667 21-83 (104)
99 PF14016 DUF4232: Protein of u 39.7 3E+02 0.0064 25.2 10.0 77 617-696 19-112 (131)
100 PLN03080 Probable beta-xylosid 39.6 56 0.0012 39.8 6.4 53 617-670 685-744 (779)
101 PF00699 Urease_beta: Urease b 37.3 68 0.0015 28.1 4.7 49 617-667 18-81 (100)
102 TIGR01451 B_ant_repeat conserv 35.8 1.6E+02 0.0034 22.5 6.2 37 617-655 13-50 (53)
103 PRK13205 ureB urease subunit b 35.4 83 0.0018 29.6 5.3 49 618-667 20-82 (162)
104 PRK13201 ureB urease subunit b 35.0 88 0.0019 28.8 5.3 49 618-667 20-82 (136)
105 PF02845 CUE: CUE domain; Int 31.7 44 0.00096 24.1 2.4 24 503-526 5-28 (42)
106 PF08821 CGGC: CGGC domain; I 31.7 2.8E+02 0.006 24.8 7.9 67 197-265 36-104 (107)
107 PRK13204 ureB urease subunit b 31.6 1E+02 0.0022 29.1 5.2 50 617-667 42-105 (159)
108 PRK15308 putative fimbrial pro 30.7 2.2E+02 0.0047 29.3 8.0 52 619-671 34-101 (234)
109 PF08626 TRAPPC9-Trs120: Trans 28.3 3.9E+02 0.0085 34.4 11.6 90 608-702 793-920 (1185)
110 PF08260 Kinin: Insect kinin p 28.2 26 0.00056 16.1 0.4 6 439-444 3-8 (8)
111 PRK13198 ureB urease subunit b 27.9 1.3E+02 0.0028 28.4 5.2 49 618-667 48-110 (158)
112 PRK15019 CsdA-binding activato 26.2 60 0.0013 30.8 2.9 33 487-520 77-109 (147)
113 PF13940 Ldr_toxin: Toxin Ldr, 25.6 55 0.0012 22.5 1.7 13 494-506 14-26 (35)
114 PF11906 DUF3426: Protein of u 25.4 5.4E+02 0.012 23.9 9.4 56 617-673 69-139 (149)
115 TIGR03391 FeS_syn_CsdE cystein 25.0 66 0.0014 30.1 2.9 35 486-521 71-105 (138)
116 COG0832 UreB Urea amidohydrola 24.8 2.2E+02 0.0048 24.9 5.7 48 618-666 20-81 (106)
117 PF02601 Exonuc_VII_L: Exonucl 22.9 2.4E+02 0.0052 30.2 7.3 76 196-272 39-119 (319)
118 TIGR03079 CH4_NH3mon_ox_B meth 22.7 2.2E+02 0.0048 31.0 6.5 50 617-670 283-354 (399)
119 PF01345 DUF11: Domain of unkn 22.5 2E+02 0.0043 23.4 5.1 29 617-645 42-71 (76)
120 PF04255 DUF433: Protein of un 22.2 71 0.0015 24.7 2.1 40 484-523 9-54 (56)
121 PF00553 CBM_2: Cellulose bind 22.1 5.2E+02 0.011 22.4 8.7 30 618-647 15-45 (101)
122 PRK09296 cysteine desufuration 21.7 83 0.0018 29.5 2.9 33 487-520 67-99 (138)
123 smart00237 Calx_beta Domains i 21.4 5E+02 0.011 21.9 8.7 30 642-672 47-77 (90)
124 PF13598 DUF4139: Domain of un 21.2 3.8E+02 0.0081 28.5 8.3 20 617-636 243-262 (317)
125 smart00546 CUE Domain that may 20.9 1.3E+02 0.0028 21.7 3.2 25 502-526 5-29 (43)
126 TIGR00845 caca sodium/calcium 20.9 7.5E+02 0.016 30.8 11.3 31 641-672 445-476 (928)
127 PF02657 SufE: Fe-S metabolism 20.6 94 0.002 28.5 3.0 33 488-521 59-91 (125)
128 COG2166 sufE Cysteine desulfur 20.4 85 0.0018 29.5 2.6 33 487-520 72-104 (144)
129 PRK13192 bifunctional urease s 20.1 1.8E+02 0.0039 28.9 4.9 50 617-667 128-191 (208)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-51 Score=437.66 Aligned_cols=292 Identities=57% Similarity=0.952 Sum_probs=249.9
Q ss_pred cccccCCCccccccccCc-----cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcc---cCceeE
Q 044427 71 LKIHTTRSWDFMGFSKGK-----LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFT---CNNKII 141 (734)
Q Consensus 71 ~~~~~~~s~~~~g~~~~~-----~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~---~n~ki~ 141 (734)
+++++++++++++++..| ..+++|+||+|||||||||++||+|.+....+.+..|.+.|.. ..+. |++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 468899999999999866 4699999999999999999999999998888889999999987 5554 999999
Q ss_pred eeeecCCCCcc-----ccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC-CCCCHH
Q 044427 142 GARYYNSENIY-----EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS-DGCATA 215 (734)
Q Consensus 142 g~~~~~~~~~~-----~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~-~g~~~~ 215 (734)
+.++|.++... .+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++. ..+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 99999876532 123356678899999999999999987766666666677899999999999999998 448889
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCce
Q 044427 216 DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRK 295 (734)
Q Consensus 216 ~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~ 295 (734)
++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|+...+.++.+||+++||+++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 99999999999999999999998832 4566788888888999999999999999987778888889999998621
Q ss_pred eEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhcc
Q 044427 296 FVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAV 375 (734)
Q Consensus 296 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~ 375 (734)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCC
Q 044427 376 NGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKP 455 (734)
Q Consensus 376 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KP 455 (734)
+||
T Consensus 236 -----------------------------------------------------------------------------~~~ 238 (307)
T cd04852 236 -----------------------------------------------------------------------------LKP 238 (307)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 467
Q ss_pred cEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 456 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
||+|||.+|++++... ...........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 239 di~apG~~i~~~~~~~---~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 239 DIAAPGVDILAAWTPE---GADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ceeeccCceeecccCc---cccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999998742 11111223478999999999999999999999999999999999999999985
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.5e-50 Score=447.20 Aligned_cols=412 Identities=23% Similarity=0.205 Sum_probs=257.5
Q ss_pred CCCCCCEEEEEccCCCCCCCCCCC-CCCCCCCCCcccccccCCcccCceeEeeeecCCC------CccccCCCCCCCCCC
Q 044427 92 SQEGSVIIGLLDTGIWPESASFND-KGLSPPPAKWKGICTGANFTCNNKIIGARYYNSE------NIYEVTDFHSPRDSE 164 (734)
Q Consensus 92 ~~G~GV~VgVIDtGid~~Hp~f~~-~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~------~~~~~~~~~~~~D~~ 164 (734)
++|+||+|||||||||+.||+|++ ++.+++...|++...... ......+...+.+. ...++.+.....|..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~ 78 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP--PPGGYYGGGEYTEEIINAALASDNPYDIVPSRDEN 78 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC--CCccccCceEEeHHHHHHHHhcCCccccCcCCCCC
Confidence 589999999999999999999994 466788889998876511 01111222222211 011233345567899
Q ss_pred CChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-----------CCHHHHHHHHHHHHhC-----C
Q 044427 165 GHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-----------CATADILAAFDDAIAD-----G 228 (734)
Q Consensus 165 gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----------~~~~~i~~ai~~ai~~-----g 228 (734)
||||||||||||+..++ ..+.||||+|+|+++|++...+ +...+++.||+|+++. .
T Consensus 79 GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~ 150 (455)
T cd07478 79 GHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNK 150 (455)
T ss_pred CchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999997542 2248999999999999998765 4688999999999874 4
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEcCCCCCCCCCCcCCC-CC------ceEEecccccCceeEEEE
Q 044427 229 VDIISVSLGSDFPFEYFEDPIAIGSFHAMKY-GILTSNSAGNSGPDPYSVSNF-AP------WTLTVAASSIDRKFVAQA 300 (734)
Q Consensus 229 ~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-ap------~vitVga~~~~~~~~~~~ 300 (734)
++|||||||.+.+.+...+.++.++..+..+ |++||+||||+|....+.... .+ --+.|+.... .+...+
T Consensus 151 p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~--~~~~ei 228 (455)
T cd07478 151 PLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEK--GFNLEI 228 (455)
T ss_pred CeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCc--ceEEEE
Confidence 7899999999877888899999999887765 999999999999754443321 00 0122222110 010000
Q ss_pred EeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEE
Q 044427 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGT 380 (734)
Q Consensus 301 ~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~ 380 (734)
-...... +++.-..+.++..+.+...........|.......|.... .+....|.-.+..+ ......|.|-+
T Consensus 229 W~~~~d~---~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~----~~~~~~GiW~i 300 (455)
T cd07478 229 WGDFPDR---FSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR----FKNIKPGIWKI 300 (455)
T ss_pred ecCCCCE---EEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE----ccCCCccceEE
Confidence 0000000 0000000111111111110000000000000011111100 11112222222211 22345578888
Q ss_pred EEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEec----ceeec--CCCCceeeccCCCCCCCCCCCCC
Q 044427 381 IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFG----ETWKD--AMAPKVVSFSSRGPNPITVDILK 454 (734)
Q Consensus 381 i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~----~~~~~--~~~~~~a~fSS~Gpt~~~~~~~K 454 (734)
.++.....+-..+.|+|...+..++..++. .....+.++... .++.. ...+.++.||||||+. ++++|
T Consensus 301 ~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~----~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~k 374 (455)
T cd07478 301 RLTGVSITDGRFDAWLPSRGLLSENTRFLE----PDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGRIK 374 (455)
T ss_pred EEEeccCCCceEEEEecCcCcCCCCCEeec----CCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCCcC
Confidence 887766544455667776555544433332 222222222111 12222 3345699999999998 89999
Q ss_pred CcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhC------CCCCHHHHHHHHHhcccc
Q 044427 455 PDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH------PNWSPSSIKSALMTTAYV 528 (734)
Q Consensus 455 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------P~ls~~~vk~~L~~TA~~ 528 (734)
|||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|++||++
T Consensus 375 pdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~ 441 (455)
T cd07478 375 PDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARR 441 (455)
T ss_pred ceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999986 789999999999999999999999965 567999999999999999
Q ss_pred ccCCCcccCCCCCCCC
Q 044427 529 MDSRKQEDLEFAYGSG 544 (734)
Q Consensus 529 ~~~~~~~~~~~~~G~G 544 (734)
+....+ ++++||||
T Consensus 442 ~~~~~~--pn~~~GyG 455 (455)
T cd07478 442 RPGDEY--PNPEWGYG 455 (455)
T ss_pred CCCCCC--CCCCCCCC
Confidence 874433 48999998
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.4e-49 Score=442.77 Aligned_cols=292 Identities=19% Similarity=0.186 Sum_probs=210.8
Q ss_pred cccccCc--cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcc-cCce---eEeeeecCCCCccccC
Q 044427 82 MGFSKGK--LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFT-CNNK---IIGARYYNSENIYEVT 155 (734)
Q Consensus 82 ~g~~~~~--~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~-~n~k---i~g~~~~~~~~~~~~~ 155 (734)
++++++| ..+.+|+||+|||||||||++||+|.+.-. ..+....+. ..++ .++. -+.+++|.++.
T Consensus 301 i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~-~n~~el~Gr---dgiDdD~nG~vdd~~G~nfVd~~----- 371 (639)
T PTZ00262 301 TRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNID-VNVKELHGR---KGIDDDNNGNVDDEYGANFVNND----- 371 (639)
T ss_pred hCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcc-cccccccCc---cccccccCCcccccccccccCCC-----
Confidence 3444455 456789999999999999999999985421 000000010 0000 0100 12234444332
Q ss_pred CCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEE
Q 044427 156 DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISV 234 (734)
Q Consensus 156 ~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINl 234 (734)
..|.|..||||||||||||...++ .| +.||||+|+|+++|+++..+ +..+++++||+||++.|++||||
T Consensus 372 --~~P~D~~GHGTHVAGIIAA~gnN~-------~G-i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 372 --GGPMDDNYHGTHVSGIISAIGNNN-------IG-IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred --CCCCCCCCcchHHHHHHhccccCC-------Cc-eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 456889999999999999976432 12 38999999999999998766 78899999999999999999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc--------------CC----CCCceEEecccccCcee
Q 044427 235 SLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV--------------SN----FAPWTLTVAASSIDRKF 296 (734)
Q Consensus 235 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------------~~----~ap~vitVga~~~~~~~ 296 (734)
|||+.. ....+..++.+|.++|++||+||||+|...... +. ..|++|+|||...+.
T Consensus 442 SlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-- 515 (639)
T PTZ00262 442 SFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-- 515 (639)
T ss_pred ccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--
Confidence 999762 234677888899999999999999998643211 11 124455555532110
Q ss_pred EEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccC
Q 044427 297 VAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVN 376 (734)
Q Consensus 297 ~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G 376 (734)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCc
Q 044427 377 GLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPD 456 (734)
Q Consensus 377 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPD 456 (734)
...-.++.||++|. .++|
T Consensus 516 -------------------------------------------------------~~~~s~s~~Snyg~-------~~VD 533 (639)
T PTZ00262 516 -------------------------------------------------------NNQYSLSPNSFYSA-------KYCQ 533 (639)
T ss_pred -------------------------------------------------------CCcccccccccCCC-------Ccce
Confidence 00012345566652 2359
Q ss_pred EEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCccc
Q 044427 457 ITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQED 536 (734)
Q Consensus 457 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~ 536 (734)
|+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++...
T Consensus 534 IaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~---- 596 (639)
T PTZ00262 534 LAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL---- 596 (639)
T ss_pred EEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC----
Confidence 99999999999886 6799999999999999999999999999999999999999999887543
Q ss_pred CCCCCCC-CccCccccCCCceec
Q 044427 537 LEFAYGS-GHINPAQAIDPGLVY 558 (734)
Q Consensus 537 ~~~~~G~-G~vn~~~Al~~~lv~ 558 (734)
+..+|| |+||+++|++.++-+
T Consensus 597 -~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -CCccccCcEEcHHHHHHHHHhc
Confidence 233343 899999999876544
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=5.7e-49 Score=411.79 Aligned_cols=271 Identities=24% Similarity=0.245 Sum_probs=205.7
Q ss_pred CCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHH
Q 044427 91 SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHT 170 (734)
Q Consensus 91 ~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThV 170 (734)
+++|+||+|+|||||||.+||++.+...+..+..+ .+... .....|..+|||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-------------------~~~~~-------~~~~~d~~gHGT~v 54 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-------------------NVLGD-------LDGGSGGGDEGRAM 54 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-------------------eeccc-------cCCCCCCCchHHHH
Confidence 57999999999999999999865322111111111 11111 13456788999999
Q ss_pred HHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHH
Q 044427 171 SSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIA 250 (734)
Q Consensus 171 AGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~ 250 (734)
|||| .||||+|+|+.+|+. ...+++++||+||+++|++|||||||......+....+.
T Consensus 55 Agii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~ 112 (275)
T cd05562 55 LEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIA 112 (275)
T ss_pred HHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHH
Confidence 9999 488999999999874 357889999999999999999999998743323345678
Q ss_pred HHHHHHHhC-CcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEc
Q 044427 251 IGSFHAMKY-GILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWG 328 (734)
Q Consensus 251 ~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~ 328 (734)
.++.++.++ |++||+||||+|.... ..+...|++|+|||.+....... +
T Consensus 113 ~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------------------~- 163 (275)
T cd05562 113 QAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAF----------------------------G- 163 (275)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccc----------------------------c-
Confidence 888888887 9999999999998543 34567899999999764421000 0
Q ss_pred CCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHH
Q 044427 329 GDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQD 408 (734)
Q Consensus 329 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~ 408 (734)
.|.. .
T Consensus 164 ----------------s~~~----------------------------~------------------------------- 168 (275)
T cd05562 164 ----------------SDPA----------------------------P------------------------------- 168 (275)
T ss_pred ----------------cccc----------------------------c-------------------------------
Confidence 0000 0
Q ss_pred HHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCC-CEeeccCCCCCCCCCCCCCCCcceE
Q 044427 409 ILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGV-DILASWSPVAPPSLDPEDTRSVSFN 487 (734)
Q Consensus 409 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~ 487 (734)
.......+.|+++||+. ++++||||+|||+ ++.+.+.. +.|.
T Consensus 169 ----------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~ 211 (275)
T cd05562 169 ----------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPP 211 (275)
T ss_pred ----------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------Ccee
Confidence 00011356688999987 8899999999975 44554443 6799
Q ss_pred EeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 488 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
.++|||||||||||++|||+|++|+|++++||++|++||+++...+. +..||||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGY---DNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCC---CCCcCcCcccHHHHhh
Confidence 99999999999999999999999999999999999999999875543 7899999999999986
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=3.9e-48 Score=402.42 Aligned_cols=243 Identities=24% Similarity=0.348 Sum_probs=198.2
Q ss_pred ccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCCh
Q 044427 88 KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHG 167 (734)
Q Consensus 88 ~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHG 167 (734)
|..+++|+||+|||||||||.+||+|.+. ....+|.+. ....|..|||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~--------~~~~d~~gHG 48 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV------------------------KERTNWTNE--------KTLDDGLGHG 48 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc------------------------ccccccCCC--------CCCCCCCCcH
Confidence 67899999999999999999999999631 011122221 2455788999
Q ss_pred HHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCC
Q 044427 168 THTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFE 246 (734)
Q Consensus 168 ThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~ 246 (734)
|||||||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++|+||+++++||||||||... +..
T Consensus 49 T~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~ 114 (255)
T cd07479 49 TFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMD 114 (255)
T ss_pred HHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCC
Confidence 999999998742 138999999999999998776 56778999999999999999999999862 344
Q ss_pred CHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceee
Q 044427 247 DPIAIGSFHAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYP 324 (734)
Q Consensus 247 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p 324 (734)
.++..++.++.++|++||+||||+|+...+. +...+++|+|||...+
T Consensus 115 ~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 163 (255)
T cd07479 115 KPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------------------- 163 (255)
T ss_pred cHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------------------
Confidence 5677777788899999999999999764443 3445788888874321
Q ss_pred eEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeecc
Q 044427 325 LIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKE 404 (734)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~ 404 (734)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCC----CCCCCCCCcEEecCCCEeeccCCCCCCCCCCCC
Q 044427 405 NGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNP----ITVDILKPDITAPGVDILASWSPVAPPSLDPED 480 (734)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 480 (734)
+.++.|||+|++. ...+++||||.|||.+|+++...
T Consensus 164 ------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------- 203 (255)
T cd07479 164 ------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------- 203 (255)
T ss_pred ------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC----------
Confidence 3678899999642 12678999999999999987664
Q ss_pred CCCcceEEeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 044427 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHP----NWSPSSIKSALMTTAYVMD 530 (734)
Q Consensus 481 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~ls~~~vk~~L~~TA~~~~ 530 (734)
+.|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 204 ---~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 ---GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ---CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 6788999999999999999999999998 7999999999999998864
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-47 Score=408.28 Aligned_cols=287 Identities=26% Similarity=0.249 Sum_probs=191.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|+|||||||++||+|.+... ..|... |++..++..+.++..+ ....+.|..|||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~-----~d~~~~~~~g~d~~~~------~~~~~~D~~gHGThvAGi 65 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK-----FDYKAYLLPGMDKWGG------FYVIMYDFFSHGTSCASV 65 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc-----cCcCCCccCCcCCCCC------ccCCCCCccccchhHHHH
Confidence 8999999999999999999964321 011111 1111112222222211 113467899999999999
Q ss_pred hccCCCCCCcccccc-ccceeeecCCCeEEEEEEecCCC-CCHHHHHH-------HHHHH--HhCCCcEEEEccCCCCCC
Q 044427 174 AAGREVPHASYYGLA-EGTARGGVPNARISMYKVCWSDG-CATADILA-------AFDDA--IADGVDIISVSLGSDFPF 242 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~-~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~-------ai~~a--i~~g~dVINlSlG~~~~~ 242 (734)
|||+.....+.+++. ...+.||||+|+|+.+|++...+ .....+.. +++|+ .+++++|||||||.....
T Consensus 66 iag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~ 145 (311)
T cd07497 66 AAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFA 145 (311)
T ss_pred HhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCC
Confidence 999864322222111 12359999999999999997543 32222222 34444 367999999999986321
Q ss_pred C----CCCCHHHHHHHHH-HhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeeccc
Q 044427 243 E----YFEDPIAIGSFHA-MKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINS 315 (734)
Q Consensus 243 ~----~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (734)
. ...+..+...+.+ .++|+++|+||||+|+...++ +..++++|+|||++........
T Consensus 146 ~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---------------- 209 (311)
T cd07497 146 YTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---------------- 209 (311)
T ss_pred ccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----------------
Confidence 1 1122333333332 489999999999999865444 4457899999997643110000
Q ss_pred CCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcC
Q 044427 316 FDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYP 395 (734)
Q Consensus 316 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 395 (734)
.+.. +.
T Consensus 210 --------~~~~------------------~~------------------------------------------------ 215 (311)
T cd07497 210 --------LFGY------------------LP------------------------------------------------ 215 (311)
T ss_pred --------hhcc------------------cc------------------------------------------------
Confidence 0000 00
Q ss_pred cceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCC
Q 044427 396 LPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPS 475 (734)
Q Consensus 396 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 475 (734)
...+.++.||||||+. ++++||||+|||++|+++.+......
T Consensus 216 ------------------------------------~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~ 257 (311)
T cd07497 216 ------------------------------------GGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG 257 (311)
T ss_pred ------------------------------------CCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc
Confidence 1234789999999998 89999999999999999876532100
Q ss_pred CCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 044427 476 LDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP------NWSPSSIKSALMTTA 526 (734)
Q Consensus 476 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~ls~~~vk~~L~~TA 526 (734)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 ---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 ---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011125799999999999999999999999876 689999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.7e-47 Score=412.74 Aligned_cols=308 Identities=29% Similarity=0.321 Sum_probs=230.9
Q ss_pred CccCCC-CCCCCEEEEEccCCCCCCCCCCCCCCCCCCC-----Cccccccc-CCcccCceeEeeeecCCCCccccCCCCC
Q 044427 87 GKLSSS-QEGSVIIGLLDTGIWPESASFNDKGLSPPPA-----KWKGICTG-ANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 87 ~~~~~~-~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~~~~~~-~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
.|..+. +|+||+|+|||||||++||+|.+....+... .+...+.. .....+.+++.+++|.+..... ..
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDI----LD 77 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCcc----CC
Confidence 454444 9999999999999999999998654332111 11122211 2223678888888888764211 11
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC--C-CCCHHHHHHHHHHHHhCCCcEEEEcc
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS--D-GCATADILAAFDDAIADGVDIISVSL 236 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~--~-g~~~~~i~~ai~~ai~~g~dVINlSl 236 (734)
..|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. . ..+...+++|++++++.|++||||||
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 152 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSL 152 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 45788999999999999875321 1224599999999999999973 3 37788899999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC----------------CCCCceEEecccccCceeEEEE
Q 044427 237 GSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS----------------NFAPWTLTVAASSIDRKFVAQA 300 (734)
Q Consensus 237 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap~vitVga~~~~~~~~~~~ 300 (734)
|...........+..++.++.++|++||+||||+|....... ...+++|+||+....
T Consensus 153 G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~------- 225 (346)
T cd07475 153 GSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK------- 225 (346)
T ss_pred CcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-------
Confidence 998544456677888888999999999999999986543211 123344444443200
Q ss_pred EeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEE
Q 044427 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGT 380 (734)
Q Consensus 301 ~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~ 380 (734)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEec
Q 044427 381 IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAP 460 (734)
Q Consensus 381 i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~AP 460 (734)
......+.++.||+|||+. ..++||||+||
T Consensus 226 ------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 226 ------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred ------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 0002235788999999998 89999999999
Q ss_pred CCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccccC-
Q 044427 461 GVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAA----HPNWSPSS----IKSALMTTAYVMDS- 531 (734)
Q Consensus 461 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~ls~~~----vk~~L~~TA~~~~~- 531 (734)
|.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+...
T Consensus 256 G~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~ 322 (346)
T cd07475 256 GGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS 322 (346)
T ss_pred CCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 9999998775 67899999999999999999999997 78999876 78899999985322
Q ss_pred --CCcccCCCCCCCCccCccccCC
Q 044427 532 --RKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 532 --~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
.+..+.+..+|+|+||+.+||+
T Consensus 323 ~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCCCccCCccccCcchhcHHHhhC
Confidence 2223357788999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-46 Score=401.63 Aligned_cols=285 Identities=28% Similarity=0.394 Sum_probs=225.8
Q ss_pred cccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCc---cccCCCCCC
Q 044427 84 FSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI---YEVTDFHSP 160 (734)
Q Consensus 84 ~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~---~~~~~~~~~ 160 (734)
++..|..+++|+||+|||||+|||++||+|.+.... +.++.+.++|..+.. ..+.+...+
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 64 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-----------------GCKVAGGYDFVGDDYDGTNPPVPDDDP 64 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-----------------CceeccccccCCcccccccCCCCCCCC
Confidence 455678899999999999999999999999754211 122334444443221 111223456
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
.|..+|||||||||+|...+ .| +.||||+|+|+.+|++...+ .....++++|++|++++++|||||||..
T Consensus 65 ~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~ 135 (312)
T cd07489 65 MDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGP 135 (312)
T ss_pred CCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcC
Confidence 67899999999999998643 12 38999999999999998665 6677789999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC---CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccC
Q 044427 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY---SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSF 316 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (734)
. .+....+..++.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 136 ~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------- 188 (312)
T cd07489 136 S--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------- 188 (312)
T ss_pred C--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------
Confidence 3 445577888888899999999999999986542 2233456777776521
Q ss_pred CCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCc
Q 044427 317 DLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPL 396 (734)
Q Consensus 317 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 396 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCC
Q 044427 397 PATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSL 476 (734)
Q Consensus 397 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 476 (734)
+.||+|||+. +...||||+|||++++++++..
T Consensus 189 -----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~----- 220 (312)
T cd07489 189 -----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA----- 220 (312)
T ss_pred -----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----
Confidence 4579999998 7899999999999999988762
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccccCCCcc------cCCCCCCCCccCcc
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH-PNWSPSSIKSALMTTAYVMDSRKQE------DLEFAYGSGHINPA 549 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~ls~~~vk~~L~~TA~~~~~~~~~------~~~~~~G~G~vn~~ 549 (734)
.+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+.. .++.++|||+||+.
T Consensus 221 ------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 221 ------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAY 294 (312)
T ss_pred ------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHH
Confidence 1469999999999999999999999999 9999999999999999987654322 23578999999999
Q ss_pred ccCCCc
Q 044427 550 QAIDPG 555 (734)
Q Consensus 550 ~Al~~~ 555 (734)
+|++..
T Consensus 295 ~a~~~~ 300 (312)
T cd07489 295 KALYAT 300 (312)
T ss_pred HHhcCC
Confidence 999954
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.7e-45 Score=384.53 Aligned_cols=248 Identities=25% Similarity=0.265 Sum_probs=203.6
Q ss_pred ccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCCh
Q 044427 88 KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHG 167 (734)
Q Consensus 88 ~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHG 167 (734)
|..+++|+||+|||||+|||++||+|.+..+.+ ...+.. ......|..+||
T Consensus 3 w~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~----------------------~~~~~~-------~~~~~~~~~gHG 53 (267)
T cd07476 3 FAFGGGDPRITIAILDGPVDRTHPCFRGANLTP----------------------LFTYAA-------AACQDGGASAHG 53 (267)
T ss_pred eeccCCCCCeEEEEeCCCcCCCChhhCCCcccc----------------------ccCccc-------cCCCCCCCCCcH
Confidence 678899999999999999999999997542211 001110 013445678999
Q ss_pred HHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCC
Q 044427 168 THTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFEYF 245 (734)
Q Consensus 168 ThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~ 245 (734)
|||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||........
T Consensus 54 T~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~ 123 (267)
T cd07476 54 THVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEA 123 (267)
T ss_pred HHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCC
Confidence 9999999987521 248999999999999987654 4477899999999999999999999986433344
Q ss_pred CCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeee
Q 044427 246 EDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPL 325 (734)
Q Consensus 246 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl 325 (734)
...+..++.++.++|++||+||||+|.....++...|++|+||+++..
T Consensus 124 ~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------------- 171 (267)
T cd07476 124 DPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------------------- 171 (267)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------------------
Confidence 566788888899999999999999998777777778999999985321
Q ss_pred EEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccc
Q 044427 326 IWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKEN 405 (734)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~ 405 (734)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcc
Q 044427 406 GQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVS 485 (734)
Q Consensus 406 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 485 (734)
+.++.||+||+.. .||||+|||.+|+++.+. +.
T Consensus 172 -----------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~ 204 (267)
T cd07476 172 -----------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GE 204 (267)
T ss_pred -----------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CC
Confidence 2467899999864 388999999999999876 67
Q ss_pred eEEeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccCCC
Q 044427 486 FNIISGTSMSCPHASGSAAYVKAAHPN----WSPSSIKSALMTTAYVMDSRK 533 (734)
Q Consensus 486 y~~~sGTSmAaP~VAG~aALl~q~~P~----ls~~~vk~~L~~TA~~~~~~~ 533 (734)
|..++|||||||||||++|||+|.+|. +++++||++|++||++++..+
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 999999999999999999999999886 999999999999999987643
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-45 Score=388.78 Aligned_cols=282 Identities=37% Similarity=0.551 Sum_probs=219.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccC--------CCCCCCCCCC
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVT--------DFHSPRDSEG 165 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~--------~~~~~~D~~g 165 (734)
|+||+|||||+|||++||+|.+... .+.++...++|......... ......|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999974321 13445555555543211100 0122456889
Q ss_pred ChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q 044427 166 HGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEY 244 (734)
Q Consensus 166 HGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~ 244 (734)
|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||... ..
T Consensus 64 HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~~ 133 (295)
T cd07474 64 HGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--NG 133 (295)
T ss_pred cHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CC
Confidence 9999999999986441 2348999999999999998544 77889999999999999999999999873 33
Q ss_pred CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 245 FEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 245 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 134 ~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------------------- 186 (295)
T cd07474 134 PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------------------- 186 (295)
T ss_pred CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------------------
Confidence 467788888899999999999999998766544 445789999998541100
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeec-cCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSF-SSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~f-SS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 481 (734)
........| |++|++. ...+||||+|||.+|++++...
T Consensus 187 -----------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~---------- 225 (295)
T cd07474 187 -----------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS---------- 225 (295)
T ss_pred -----------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----------
Confidence 001123344 4455555 7889999999999999998762
Q ss_pred CCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcc-cCCCCCCCCccCcccc
Q 044427 482 RSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE-DLEFAYGSGHINPAQA 551 (734)
Q Consensus 482 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~-~~~~~~G~G~vn~~~A 551 (734)
...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+.. ..+..+|+|+||+.+|
T Consensus 226 -~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 -GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 26789999999999999999999999999999999999999999998765432 1357899999999986
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-45 Score=376.22 Aligned_cols=234 Identities=24% Similarity=0.365 Sum_probs=193.0
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
|+|||||||||++||+|.+.. +..+++.. ....|..+|||||||||+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------~~~~~~~~---------~~~~~~~~HGT~vAgiia~ 48 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------IARLFFAG---------PGAPAPSAHGTAVASLLAG 48 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------cccccCCC---------CCCCCCCCCHHHHHHHHhC
Confidence 789999999999999996431 11111111 1345678999999999999
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC----CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHH
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG----CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIG 252 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g----~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a 252 (734)
+... . .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||... ...++.+
T Consensus 49 ~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-----~~~l~~a 112 (239)
T cd05561 49 AGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-----NALLAAA 112 (239)
T ss_pred CCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CHHHHHH
Confidence 8532 1 6999999999999998642 67788999999999999999999999752 3467778
Q ss_pred HHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCC
Q 044427 253 SFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDA 331 (734)
Q Consensus 253 ~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~ 331 (734)
+.++.++|++||+||||+|... ..++...+++|+|++.+.+
T Consensus 113 i~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------------------- 154 (239)
T cd05561 113 VAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------------------- 154 (239)
T ss_pred HHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------------------
Confidence 8889999999999999999753 3455566788888874321
Q ss_pred cccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHH
Q 044427 332 ANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILD 411 (734)
Q Consensus 332 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~ 411 (734)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEecc
Q 044427 412 YIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491 (734)
Q Consensus 412 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 491 (734)
+.++.||++|+.. ||.|||.+|+++.+. +.|..++|
T Consensus 155 -----------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sG 190 (239)
T cd05561 155 -----------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSG 190 (239)
T ss_pred -----------------------CCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCC
Confidence 2567899999876 999999999998765 67999999
Q ss_pred ccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCC
Q 044427 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSG 544 (734)
Q Consensus 492 TSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G 544 (734)
||||||||||++|||+|++| |++++||++|++||++++..+. +..||||
T Consensus 191 TS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 191 TSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 99999999999999999999 9999999999999998877655 7899998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.2e-44 Score=383.67 Aligned_cols=258 Identities=25% Similarity=0.316 Sum_probs=186.8
Q ss_pred CCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc--CCc--ccCce--eEeeeecCCCCc----------------c
Q 044427 95 GSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG--ANF--TCNNK--IIGARYYNSENI----------------Y 152 (734)
Q Consensus 95 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~--~~f--~~n~k--i~g~~~~~~~~~----------------~ 152 (734)
|+|+|||||||||++||+|++. .|....+. .+. +.|.. -+.+++|..... .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999853 22111110 000 00000 123333332110 0
Q ss_pred ccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEE
Q 044427 153 EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDII 232 (734)
Q Consensus 153 ~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVI 232 (734)
...+...+.+..+|||||||||++...++ .| +.||||+|+|+.+|++........++++||+||++.|++||
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~Ii 145 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVI 145 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEE
Confidence 01122345578999999999999986432 12 38999999999999987555677889999999999999999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc---C--------CCCCceEEecccccCceeEEEEE
Q 044427 233 SVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV---S--------NFAPWTLTVAASSIDRKFVAQAV 301 (734)
Q Consensus 233 NlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~ap~vitVga~~~~~~~~~~~~ 301 (734)
|||||... ......+..++.++.++|+++|+||||+|...... + ...+++|+||+....
T Consensus 146 N~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (291)
T cd07483 146 NMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------- 215 (291)
T ss_pred EeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------
Confidence 99999763 22234567777888999999999999998643211 1 112445555543211
Q ss_pred eCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEE
Q 044427 302 LGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTI 381 (734)
Q Consensus 302 ~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i 381 (734)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecC
Q 044427 382 MADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPG 461 (734)
Q Consensus 382 ~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG 461 (734)
.....++.||++|+. +|||.|||
T Consensus 216 --------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 216 --------------------------------------------------YENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred --------------------------------------------------CCcccccccCCCCCC-------ceEEEeCC
Confidence 001247889999974 46999999
Q ss_pred CCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 462 VDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 462 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
.+|+++.+. +.|..++|||||||||||++|||+|++|.|++.|||++|++||.
T Consensus 239 ~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999776 67999999999999999999999999999999999999999984
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=7.6e-44 Score=385.51 Aligned_cols=220 Identities=27% Similarity=0.320 Sum_probs=166.8
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CATADILAAFDDAIADGVDIISVSLG 237 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~ai~~g~dVINlSlG 237 (734)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... ++..++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985332 2248999999999999987532 23457999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHH-HHhCCcEEEEcCCCCCCCCCCcCC---CCCceEEecccccCceeEEEEEeCCCeEeeeeec
Q 044427 238 SDFPFEYFEDPIAIGSFH-AMKYGILTSNSAGNSGPDPYSVSN---FAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSI 313 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (734)
.....+.. ..+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||......+...
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 254 EATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred cCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 87422222 223334443 457899999999999987766554 35799999996432100000
Q ss_pred ccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccC
Q 044427 314 NSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFS 393 (734)
Q Consensus 314 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 393 (734)
| ..
T Consensus 319 ---------y----------------------~~---------------------------------------------- 321 (412)
T cd04857 319 ---------Y----------------------SL---------------------------------------------- 321 (412)
T ss_pred ---------c----------------------cc----------------------------------------------
Confidence 0 00
Q ss_pred cCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCC
Q 044427 394 YPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAP 473 (734)
Q Consensus 394 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~ 473 (734)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 ------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-- 361 (412)
T cd04857 322 ------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-- 361 (412)
T ss_pred ------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC--
Confidence 001134689999999998 9999999999999998752211
Q ss_pred CCCCCCCCCCcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 044427 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVM 529 (734)
Q Consensus 474 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~ 529 (734)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ---------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ---------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ---------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15689999999999999999999985 578999999999999999864
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-44 Score=375.17 Aligned_cols=244 Identities=32% Similarity=0.359 Sum_probs=196.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||||||++||+|...... .+.++.+.++|.+... ....|..+|||||||||+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~----------------~~~~i~~~~~~~~~~~------~~~~~~~~HGT~vagiia 58 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF----------------KNLRILGEYDFVDNSN------NTNYTDDDHGTAVLSTMA 58 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc----------------cCCceeeeecCccCCC------CCCCCCCCchhhhheeee
Confidence 799999999999999999522110 2446777778876531 113678899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC--------
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CATADILAAFDDAIADGVDIISVSLGSDFPFEY-------- 244 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~-------- 244 (734)
|+.. +.+.||||+|+|+.+|+..... ....+++.|++||.+.+++|||||||.......
T Consensus 59 ~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~ 128 (261)
T cd07493 59 GYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYAD 128 (261)
T ss_pred eCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccc
Confidence 9752 2348999999999999876432 345678899999999999999999998742111
Q ss_pred ---CCCHHHHHHHHHHhCCcEEEEcCCCCCCCC---CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 245 ---FEDPIAIGSFHAMKYGILTSNSAGNSGPDP---YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 245 ---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
....+..++.++.++|+++|+||||+|... ...+...+++|+|||...+
T Consensus 129 ~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 183 (261)
T cd07493 129 MDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------- 183 (261)
T ss_pred ccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-------------------------
Confidence 123567788888999999999999999763 3445567888999874321
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 478 (734)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 ------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------- 217 (261)
T cd07493 184 ------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------- 217 (261)
T ss_pred ------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC--------
Confidence 2577899999998 899999999999999985543
Q ss_pred CCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 479 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 218 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 -----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred -----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999985
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=5.1e-44 Score=374.56 Aligned_cols=247 Identities=28% Similarity=0.356 Sum_probs=195.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|||||+|||++||+|.+. . +..... .+...+.+.+.. .....+.|..+||||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~-------~~~~~~-------~~~~~~~~~d~~----~~~~~~~d~~~HGT~vagi 61 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-Y-------RGWGGG-------SADHDYNWFDPV----GNTPLPYDDNGHGTHTMGT 61 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-c-------cccCCC-------CcccccccccCC----CCCCCCCCCCCchhhhhhh
Confidence 89999999999999999999754 1 110000 000000111110 1124566788999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh------------CCCcEEEEccCCCCC
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA------------DGVDIISVSLGSDFP 241 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~------------~g~dVINlSlG~~~~ 241 (734)
|+|.... +...||||+|+|+.+|+++..++...+++++++++++ .+++|||||||....
T Consensus 62 i~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~ 132 (264)
T cd07481 62 MVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG 132 (264)
T ss_pred eeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC
Confidence 9987532 1128999999999999998877888899999999975 789999999998832
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC---cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS---VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 242 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
....+..++..+.++|++||+||||++..... .+...+++|+||+.+.+
T Consensus 133 ---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 184 (264)
T cd07481 133 ---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------------------------- 184 (264)
T ss_pred ---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-------------------------
Confidence 34556667777889999999999999865432 34556788888874322
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 478 (734)
+.++.||++||.. .+++||||+|||.+|+++.+.
T Consensus 185 ------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------- 218 (264)
T cd07481 185 ------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------- 218 (264)
T ss_pred ------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC--------
Confidence 3578899999998 799999999999999999876
Q ss_pred CCCCCcceEEeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 044427 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN--WSPSSIKSALMTTAY 527 (734)
Q Consensus 479 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--ls~~~vk~~L~~TA~ 527 (734)
+.|..++|||||||+|||++|||+|++|. ++++|||++|++||+
T Consensus 219 -----~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 -----GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -----CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999 999999999999985
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-43 Score=367.99 Aligned_cols=257 Identities=31% Similarity=0.462 Sum_probs=205.4
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|+|||+|||++||+|.+.... ...+.... .......|..+||||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----------------------~~~~~~~~----~~~~~~~d~~~HGT~vAgi 53 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----------------------FADFVNTV----NGRTTPYDDNGHGTHVAGI 53 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----------------------cccccccc----cCCCCCCCCCCchHHHHHH
Confidence 89999999999999999999754211 01111100 1124566778999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCH
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD----GVDIISVSLGSDFPFEYFEDP 248 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~----g~dVINlSlG~~~~~~~~~~~ 248 (734)
|+|..... .+.+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.........+.
T Consensus 54 iag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~ 126 (264)
T cd07487 54 IAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDP 126 (264)
T ss_pred HhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCH
Confidence 99986431 22349999999999999998876 6778899999999998 999999999998544567788
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCCCCC--CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeE
Q 044427 249 IAIGSFHAMKYGILTSNSAGNSGPDPY--SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLI 326 (734)
Q Consensus 249 ~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~ 326 (734)
+..++.++.++|++||+||||++.... ..+...+++|+||+.+.+..
T Consensus 127 ~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------------------- 175 (264)
T cd07487 127 LCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------------------- 175 (264)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------------------
Confidence 899999999999999999999998775 44556789999998654310
Q ss_pred EcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccch
Q 044427 327 WGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENG 406 (734)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~ 406 (734)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcce
Q 044427 407 QDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 486 (734)
....++.||++||+. ++++||||+|||.+|++..+... .......+.|
T Consensus 176 --------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~----~~~~~~~~~~ 223 (264)
T cd07487 176 --------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGG----NPGAGVGSGY 223 (264)
T ss_pred --------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccc----ccCCCCCCce
Confidence 001478899999998 89999999999999999865421 0011223778
Q ss_pred EEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 487 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 224 ~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 224 FEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred EeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999985
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=2.3e-42 Score=363.78 Aligned_cols=262 Identities=24% Similarity=0.277 Sum_probs=198.9
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGH 166 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gH 166 (734)
+|..+++|+||+|+|||||||++||+|.+...... ++. ....+.+.... ........|..+|
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~~~------------~~~~~~~~~~~---~~~~~~~~~~~gH 63 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---YDP------------AVNGYNFVPNV---GDIDNDVSVGGGH 63 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---ccc------------ccCCccccccc---CCcCCCCCCCCCC
Confidence 57889999999999999999999999986511100 000 00000010000 0011345567899
Q ss_pred hHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCC
Q 044427 167 GTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYF 245 (734)
Q Consensus 167 GThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~ 245 (734)
||||||||+|+........|++ .+.|+||+|+|+.+|++...+ ....+++++|+||++.|++|||||||... ...+
T Consensus 64 GT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~ 140 (273)
T cd07485 64 GTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIY 140 (273)
T ss_pred HHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-cccc
Confidence 9999999999765432222222 236799999999999998754 67788999999999999999999999873 2334
Q ss_pred CCHHHHHHHHHHhC-------CcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 246 EDPIAIGSFHAMKY-------GILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 246 ~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
...+..++..+.++ |++||+||||+|......+...+++|+|++.+.+
T Consensus 141 ~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------------- 195 (273)
T cd07485 141 SPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------------- 195 (273)
T ss_pred CHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-------------------------
Confidence 55677777788877 9999999999998776666777889999885422
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCC-CEeeccCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGV-DILASWSPVAPPSLD 477 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~ 477 (734)
+.++.||++|+.. ||.|||. .|+++.+....
T Consensus 196 ------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 196 ------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ------------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC----
Confidence 2567899999876 9999999 88888765211
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN-WSPSSIKSALMTT 525 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-ls~~~vk~~L~~T 525 (734)
.....|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11367899999999999999999999999999 9999999999986
No 18
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=369.66 Aligned_cols=264 Identities=25% Similarity=0.236 Sum_probs=187.4
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
.+|||||||||.+||+|.+.- .....+.... ....|..||||||||||++
T Consensus 1 p~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~-------~~~~d~~gHGT~vAgiia~ 50 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEP-------GWTADDLGHGTAVAGLALY 50 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh-----------------------ccccccccCC-------CCcCCCCCChHHHHHHHHc
Confidence 379999999999999997431 1111121110 1156899999999999997
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC-----CCHHHHHHHHHHHHhCC---CcEEEEccCCCCCCCCCC-C
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-----CATADILAAFDDAIADG---VDIISVSLGSDFPFEYFE-D 247 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----~~~~~i~~ai~~ai~~g---~dVINlSlG~~~~~~~~~-~ 247 (734)
....+ ....|+||+|+|+.+|++...+ .+..++++||+|+++.+ ++|||||||......... .
T Consensus 51 ~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~ 122 (291)
T cd04847 51 GDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPS 122 (291)
T ss_pred CcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCC
Confidence 65321 1238999999999999999864 46678999999999853 499999999984322222 2
Q ss_pred HHHHHHHH-HHhCCcEEEEcCCCCCCCCCCc------------CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecc
Q 044427 248 PIAIGSFH-AMKYGILTSNSAGNSGPDPYSV------------SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSIN 314 (734)
Q Consensus 248 ~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 314 (734)
.+..++.+ +.++|++||+||||+|...... +..++++|+|||.+........
T Consensus 123 ~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~--------------- 187 (291)
T cd04847 123 SWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR--------------- 187 (291)
T ss_pred cHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc---------------
Confidence 45555543 5689999999999999775432 2346799999997654210000
Q ss_pred cCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCc
Q 044427 315 SFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSY 394 (734)
Q Consensus 315 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 394 (734)
...+.
T Consensus 188 -----------s~~~~---------------------------------------------------------------- 192 (291)
T cd04847 188 -----------ARYSA---------------------------------------------------------------- 192 (291)
T ss_pred -----------ccccc----------------------------------------------------------------
Confidence 00000
Q ss_pred CcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCC
Q 044427 395 PLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPP 474 (734)
Q Consensus 395 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 474 (734)
......+.||||||.. ++.+||||+|||++|.+........
T Consensus 193 -------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 193 -------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred -------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCcc
Confidence 0001233499999998 9999999999999998865421100
Q ss_pred -----CCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 475 -----SLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 475 -----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
...........|..++|||||||||||++|||+|++|++++++||++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001122478999999999999999999999999999999999999999985
No 19
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-42 Score=356.58 Aligned_cols=253 Identities=31% Similarity=0.415 Sum_probs=188.9
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||+|||++||+|.+.- ....+|..+. ........|..+|||||||||+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~---~~~~~~~~d~~~HGT~vAgiia 54 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------AQWADFDENR---RISATEVFDAGGHGTHVSGTIG 54 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------CCceeccCCC---CCCCCCCCCCCCcHHHHHHHHh
Confidence 7999999999999999997431 1122232211 0112345578899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHH
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFH 255 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~ 255 (734)
|+..+ +.+.||||+|+|+.+|++...++...+++++|+|+++.+++|||||||..... .+.+..++..
T Consensus 55 ~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~ 122 (254)
T cd07490 55 GGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEA 122 (254)
T ss_pred cCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHH
Confidence 98642 23489999999999999988778889999999999999999999999988322 5666666655
Q ss_pred HHh-CCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCccc
Q 044427 256 AMK-YGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANY 334 (734)
Q Consensus 256 a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~ 334 (734)
+.+ +|++||+||||+|......+...+++|+||+++.+..... +..
T Consensus 123 ~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~----------------------------~s~----- 169 (254)
T cd07490 123 LSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW----------------------------FSS----- 169 (254)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC----------------------------ccC-----
Confidence 554 6999999999999886667777899999999764311000 000
Q ss_pred CCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHh
Q 044427 335 SAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 335 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
+
T Consensus 170 -----------~-------------------------------------------------------------------- 170 (254)
T cd07490 170 -----------F-------------------------------------------------------------------- 170 (254)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccc
Q 044427 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494 (734)
Q Consensus 415 ~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 494 (734)
.......++++|.. .....||||.|||.+|+++.... ...+.|..++||||
T Consensus 171 -------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~ 221 (254)
T cd07490 171 -------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSM 221 (254)
T ss_pred -------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHH
Confidence 00111222333332 25568999999999999965221 11377999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 495 AaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
|||+|||++|||+|++|+|++++||++|++||+
T Consensus 222 AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999984
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5.8e-42 Score=358.42 Aligned_cols=246 Identities=29% Similarity=0.377 Sum_probs=204.5
Q ss_pred ccccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC
Q 044427 79 WDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH 158 (734)
Q Consensus 79 ~~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~ 158 (734)
+..+++...|..+ +|+||+|+|||+|||++||+|... ++...+++.+.. .
T Consensus 13 ~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~-------~ 62 (260)
T cd07484 13 LDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDND-------S 62 (260)
T ss_pred ccccChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCC-------C
Confidence 3446666678666 999999999999999999998422 233334444332 3
Q ss_pred CCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044427 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLG 237 (734)
Q Consensus 159 ~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG 237 (734)
.+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++|||||||
T Consensus 63 ~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g 134 (260)
T cd07484 63 DAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLG 134 (260)
T ss_pred CCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 35678899999999999875332 1238999999999999998765 67888999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCC
Q 044427 238 SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (734)
... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 135 ~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------ 186 (260)
T cd07484 135 GGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------------ 186 (260)
T ss_pred CCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------------
Confidence 873 4456777778888999999999999998877788888999999885422
Q ss_pred CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcc
Q 044427 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLP 397 (734)
Q Consensus 318 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 397 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCC
Q 044427 398 ATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLD 477 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 477 (734)
+..+.||++|+.. |++|||.+|++....
T Consensus 187 -------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------- 214 (260)
T cd07484 187 -------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------- 214 (260)
T ss_pred -------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------
Confidence 2567889999876 999999999998765
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVM 529 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~ 529 (734)
+.|..++|||||||+|||++||++|++| |++++||++|++||+++
T Consensus 215 ------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 ------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 6799999999999999999999999999 99999999999999876
No 21
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=9.2e-42 Score=355.82 Aligned_cols=232 Identities=31% Similarity=0.438 Sum_probs=194.6
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGH 166 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gH 166 (734)
.+..+++|+||+|||||+||+++||+|.+. +...+++... ....|..+|
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~--------~~~~d~~~H 65 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGG--------DPDSDCNGH 65 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCC--------CCCCCCCcc
Confidence 346789999999999999999999999643 2233344332 125678899
Q ss_pred hHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC-----CCcEEEEccCCCC
Q 044427 167 GTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD-----GVDIISVSLGSDF 240 (734)
Q Consensus 167 GThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~-----g~dVINlSlG~~~ 240 (734)
||||||||+++. .||||+|+|+.+|+++..+ ...++++++|+++++. +++|||||||...
T Consensus 66 GT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~ 131 (255)
T cd04077 66 GTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA 131 (255)
T ss_pred HHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC
Confidence 999999999863 7999999999999998875 6778899999999987 4899999999872
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLN 319 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (734)
...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 132 -----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~-------------------------- 180 (255)
T cd04077 132 -----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD-------------------------- 180 (255)
T ss_pred -----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC--------------------------
Confidence 45677788889999999999999999765 3445567899999885432
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceE
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPAT 399 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 399 (734)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCC
Q 044427 400 LISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479 (734)
Q Consensus 400 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 479 (734)
+.++.||++||.. ||+|||.+|+++....
T Consensus 181 -----------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-------- 209 (255)
T cd04077 181 -----------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS-------- 209 (255)
T ss_pred -----------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC--------
Confidence 2467899999986 9999999999987742
Q ss_pred CCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 044427 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYV 528 (734)
Q Consensus 480 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~ 528 (734)
...|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 210 ---~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 ---DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ---CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2689999999999999999999999999999999999999999974
No 22
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.8e-42 Score=361.55 Aligned_cols=258 Identities=24% Similarity=0.291 Sum_probs=186.3
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
+.+++...|..+++|+||+|||||||||..|| |...++. + + ..+..+ ....
T Consensus 6 ~~l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~-----------~----~~~~~~------~~~~ 56 (298)
T cd07494 6 ALLNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V-----------R----VVLAPG------ATDP 56 (298)
T ss_pred hhcChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c-----------e----eecCCC------CCCC
Confidence 34566667889999999999999999999998 7533211 0 0 011111 1134
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
..|+.|||||||+++ .||||+|+|+.+|+++. ...++++||+||++++++|||||||..
T Consensus 57 ~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~ 115 (298)
T cd07494 57 ACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYD 115 (298)
T ss_pred CCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccC
Confidence 567889999999865 68999999999999864 566789999999999999999999986
Q ss_pred CCCCC---------CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeee
Q 044427 240 FPFEY---------FEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPG 310 (734)
Q Consensus 240 ~~~~~---------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (734)
..... ....++.++.+|.++|++||+||||++. .++...|++|+||+++.+.. +...
T Consensus 116 ~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~~-- 181 (298)
T cd07494 116 LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GARR-- 181 (298)
T ss_pred CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Cccc--
Confidence 32111 1234777888889999999999999874 46778899999999754310 0000
Q ss_pred eecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCc
Q 044427 311 LSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDL 390 (734)
Q Consensus 311 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 390 (734)
T Consensus 182 -------------------------------------------------------------------------------- 181 (298)
T cd07494 182 -------------------------------------------------------------------------------- 181 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcE-------------
Q 044427 391 AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDI------------- 457 (734)
Q Consensus 391 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI------------- 457 (734)
.....+.|+|. . .+++.|||+
T Consensus 182 ------------------------------------------~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~ 215 (298)
T cd07494 182 ------------------------------------------ASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYL 215 (298)
T ss_pred ------------------------------------------ccccccCcccc--c--CCCCccCccccccCcCCccccc
Confidence 00001112111 1 145667776
Q ss_pred ---EecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 044427 458 ---TAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532 (734)
Q Consensus 458 ---~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~ 532 (734)
+|||..|.+...... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++...
T Consensus 216 ~~~~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 216 MLPVPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred ccccCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 479999876543210 0011136799999999999999999999999999999999999999999987654
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-41 Score=358.42 Aligned_cols=266 Identities=24% Similarity=0.291 Sum_probs=190.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcccC---ceeEeeeecCCCC--ccccCCCCCCCCCCCChHH
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFTCN---NKIIGARYYNSEN--IYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~~n---~ki~g~~~~~~~~--~~~~~~~~~~~D~~gHGTh 169 (734)
||+|||||||||++||+|.+.... .|+-.... .....+ .+.....++.+.. ...........+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHH
Confidence 799999999999999999854311 11100000 000000 0000000000000 0000112334567899999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHH----------hCCCcEEEEccCCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAI----------ADGVDIISVSLGSD 239 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai----------~~g~dVINlSlG~~ 239 (734)
|||||+|...++ .| +.||||+|+|+.+|+++..+.+..++++|++|++ .++++|||||||..
T Consensus 77 vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~ 148 (285)
T cd07496 77 VAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGD 148 (285)
T ss_pred HHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCC
Confidence 999999986532 22 2899999999999999887778899999999998 45789999999987
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
.. ....+..++..+.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 149 ~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 200 (285)
T cd07496 149 GA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------------------- 200 (285)
T ss_pred CC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-------------------------
Confidence 32 145677888889999999999999999875 4556677899999885422
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCC--C
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPS--L 476 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~--~ 476 (734)
+.++.||++|+.. ||.|||++|.+......... .
T Consensus 201 ------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~ 236 (285)
T cd07496 201 ------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNT 236 (285)
T ss_pred ------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCccccccc
Confidence 2578899999986 99999999998876532110 0
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
.........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 237 ~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 237 GTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 0111223678999999999999999999999999999999999999976
No 24
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-41 Score=348.84 Aligned_cols=240 Identities=28% Similarity=0.356 Sum_probs=190.4
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
|+|||||+|||++||+|.+.. ++...+++.... ....|..+|||||||||+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~-------~~~~~~~~HGT~vAgiiag 52 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNN-------DPTSDIDGHGTACAGVAAA 52 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCC-------CCCCCCCCCHHHHHHHHHh
Confidence 789999999999999997520 111111222111 2456788999999999999
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHH
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFH 255 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~ 255 (734)
+..+. ..+.||||+|+|+.+|++...+ +...++.++|+|+++.+++|||||||...........+..++.+
T Consensus 53 ~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 124 (242)
T cd07498 53 VGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATY 124 (242)
T ss_pred ccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHH
Confidence 86422 1248999999999999998764 67888999999999999999999999875444445667777778
Q ss_pred HHh-CCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCccc
Q 044427 256 AMK-YGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANY 334 (734)
Q Consensus 256 a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~ 334 (734)
+.. +|+++|+||||+|......+...+++|+||+.+..
T Consensus 125 ~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------------------------- 163 (242)
T cd07498 125 GRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN----------------------------------------- 163 (242)
T ss_pred HhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-----------------------------------------
Confidence 888 99999999999998776667778999999985422
Q ss_pred CCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHh
Q 044427 335 SAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 335 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccc
Q 044427 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494 (734)
Q Consensus 415 ~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 494 (734)
+.++.||++||.. |+.|||.++......... ..+...+.|..++||||
T Consensus 164 --------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~~~~~GTS~ 211 (242)
T cd07498 164 --------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGYGSFSGTSF 211 (242)
T ss_pred --------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCceEeeCcHHH
Confidence 2567899999986 999999999887543210 11122367899999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 495 AaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
|||+|||++|||+|++|+|++++||++|++|
T Consensus 212 Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 212 ASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999976
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=3.6e-41 Score=358.65 Aligned_cols=277 Identities=29% Similarity=0.322 Sum_probs=201.4
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHH
Q 044427 90 SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 90 ~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGTh 169 (734)
.+++|+||+|||||+|||++||+|.+.... + ..+ .++++.....+.+ ...|..+||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~-----~------~~~-~~~~~~~~~~~~~----------~~~d~~~HGT~ 59 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN-----K------TNL-FHRKIVRYDSLSD----------TKDDVDGHGTH 59 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC-----c------Ccc-CcccEEEeeccCC----------CCCCCCCCcch
Confidence 589999999999999999999999754220 0 000 2334443333322 12278999999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFEYFED 247 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~ 247 (734)
|||||+|+...... ...+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||..... ...
T Consensus 60 vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~ 132 (293)
T cd04842 60 VAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYT 132 (293)
T ss_pred hheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccc
Confidence 99999998754321 11349999999999999988765 5566788999999999999999999988421 123
Q ss_pred HHHHHHHHHH-h-CCcEEEEcCCCCCCCCC---CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 248 PIAIGSFHAM-K-YGILTSNSAGNSGPDPY---SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 248 ~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
....++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 133 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------- 187 (293)
T cd04842 133 LLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------- 187 (293)
T ss_pred hHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-------------------------
Confidence 3344444433 3 89999999999997764 4556679999999976542100
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
...|..
T Consensus 188 --------------------~~~~~~------------------------------------------------------ 193 (293)
T cd04842 188 --------------------GEGGLG------------------------------------------------------ 193 (293)
T ss_pred --------------------cccccc------------------------------------------------------
Confidence 000000
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTR 482 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 482 (734)
.......++.||++||+. ++++||||+|||++|+++.... .......
T Consensus 194 ---------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~----~~~~~~~ 240 (293)
T cd04842 194 ---------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGG----GGIGDTS 240 (293)
T ss_pred ---------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCC----CCCCCCC
Confidence 001224689999999998 8999999999999999997542 0011122
Q ss_pred CcceEEeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 044427 483 SVSFNIISGTSMSCPHASGSAAYVKAAH-----P---NWSPSSIKSALMTTAY 527 (734)
Q Consensus 483 ~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~ls~~~vk~~L~~TA~ 527 (734)
...|..++|||||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 241 ~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 241 DSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 3678999999999999999999999985 4 6677899999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-41 Score=357.19 Aligned_cols=260 Identities=30% Similarity=0.399 Sum_probs=183.4
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHH
Q 044427 90 SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 90 ~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGTh 169 (734)
.+++|+||+|||||+|||++||+|.+... ...+|.+. ..+.|..+||||
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------~~~~~~~~--------~~~~d~~gHGT~ 51 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------TTKSFVGG--------EDVQDGHGHGTH 51 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------cCcccCCC--------CCCCCCCCcHHH
Confidence 57899999999999999999999974321 12233322 235678999999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCC----CCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFP----FEY 244 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~----~~~ 244 (734)
|||||+|+... +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||.... ..+
T Consensus 52 VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~ 122 (297)
T cd07480 52 CAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGW 122 (297)
T ss_pred HHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccC
Confidence 99999998643 2237999999999999987654 667779999999999999999999998631 011
Q ss_pred -----CCCHHHHHHHHH---------------HhCCcEEEEcCCCCCCCCCCcCC-----CCCceEEecccccCceeEEE
Q 044427 245 -----FEDPIAIGSFHA---------------MKYGILTSNSAGNSGPDPYSVSN-----FAPWTLTVAASSIDRKFVAQ 299 (734)
Q Consensus 245 -----~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~ap~vitVga~~~~~~~~~~ 299 (734)
....++.....+ .++|++||+||||+|........ ..+.+++|++....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~------ 196 (297)
T cd07480 123 PPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL------ 196 (297)
T ss_pred CCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC------
Confidence 112233232333 67899999999999865432111 11222222221100
Q ss_pred EEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceE
Q 044427 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLG 379 (734)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g 379 (734)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEe
Q 044427 380 TIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITA 459 (734)
Q Consensus 380 ~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~A 459 (734)
+....|+++.+ ....||||+|
T Consensus 197 -------------------------------------------------------~~~~~~~~~~~----~~~~~~dv~A 217 (297)
T cd07480 197 -------------------------------------------------------GRTGNFSAVAN----FSNGEVDIAA 217 (297)
T ss_pred -------------------------------------------------------CCCCCccccCC----CCCCceEEEe
Confidence 11222333322 2345789999
Q ss_pred cCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc----cccccCCCcc
Q 044427 460 PGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT----AYVMDSRKQE 535 (734)
Q Consensus 460 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T----A~~~~~~~~~ 535 (734)
||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|++. +......+.
T Consensus 218 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~- 283 (297)
T cd07480 218 PGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGL- 283 (297)
T ss_pred CCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCC-
Confidence 99999998876 789999999999999999999999999999988888777743 222212222
Q ss_pred cCCCCCCCCccCcc
Q 044427 536 DLEFAYGSGHINPA 549 (734)
Q Consensus 536 ~~~~~~G~G~vn~~ 549 (734)
....+|+|++++.
T Consensus 284 -~~~~~g~G~~~~~ 296 (297)
T cd07480 284 -DLPDRGVGLGLAP 296 (297)
T ss_pred -ChhhcCCceeecC
Confidence 3678999999875
No 27
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=5.9e-40 Score=336.58 Aligned_cols=226 Identities=33% Similarity=0.481 Sum_probs=187.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||+||+++||+|.+. +....+|..... ....|..+|||||||||+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~------~~~~~~~~HGT~vA~ii~ 51 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDN------NDYQDGNGHGTHVAGIIA 51 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCC------CCCCCCCCCHHHHHHHHh
Confidence 799999999999999999743 222223333211 345678899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHH
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSF 254 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~ 254 (734)
+..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.+++|||||||... ....+..++.
T Consensus 52 ~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~ 118 (229)
T cd07477 52 ALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIK 118 (229)
T ss_pred cccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHH
Confidence 986431 238999999999999998776 56789999999999999999999999873 2345666777
Q ss_pred HHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCc
Q 044427 255 HAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAA 332 (734)
Q Consensus 255 ~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~ 332 (734)
.+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 119 ~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------------------- 159 (229)
T cd07477 119 KAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN--------------------------------------- 159 (229)
T ss_pred HHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC---------------------------------------
Confidence 88899999999999999776554 6677899999885432
Q ss_pred ccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHH
Q 044427 333 NYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDY 412 (734)
Q Consensus 333 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 412 (734)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccc
Q 044427 413 IRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGT 492 (734)
Q Consensus 413 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 492 (734)
+.++.||++|+.. |+.|||.+|+++++. +.|..++||
T Consensus 160 ----------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GT 196 (229)
T cd07477 160 ----------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGT 196 (229)
T ss_pred ----------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccH
Confidence 2466789999865 999999999999876 678999999
Q ss_pred cchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 493 SMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 493 SmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
|||||+|||++|||+|++|++++.+||++|++|
T Consensus 197 S~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 197 SMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999976
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-40 Score=341.46 Aligned_cols=246 Identities=29% Similarity=0.413 Sum_probs=189.5
Q ss_pred CCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccc---ccc-CCcccCcee--EeeeecCCCCccccCCCCCCCCCCCChH
Q 044427 95 GSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGI---CTG-ANFTCNNKI--IGARYYNSENIYEVTDFHSPRDSEGHGT 168 (734)
Q Consensus 95 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~---~~~-~~f~~n~ki--~g~~~~~~~~~~~~~~~~~~~D~~gHGT 168 (734)
+||+|||||||||++||+|.+.. |... +.. .+...+..+ ...++|.. ....+.|..+|||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~HGT 67 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDGNGYVDDIYGWNFVN-------NDNDPMDDNGHGT 67 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCCCCcccCCCcccccC-------CCCCCCCCCCcHH
Confidence 78999999999999999998542 2211 100 000000000 00111111 2245678899999
Q ss_pred HHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC
Q 044427 169 HTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFED 247 (734)
Q Consensus 169 hVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~ 247 (734)
||||||+|...... .+.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.... ..
T Consensus 68 ~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~ 135 (259)
T cd07473 68 HVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQ 135 (259)
T ss_pred HHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CH
Confidence 99999999864321 248999999999999998876 788899999999999999999999998832 56
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCCCC---CcCC--CCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 248 PIAIGSFHAMKYGILTSNSAGNSGPDPY---SVSN--FAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 248 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~--~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
.+..++.++..+|++||+||||+|.... .++. ..+++|+||+.+.+
T Consensus 136 ~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------------------- 186 (259)
T cd07473 136 ALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------------------- 186 (259)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------------------
Confidence 7777888889999999999999987632 2232 24677888764322
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTR 482 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 482 (734)
+.++.||++||. +||+.|||.++++..+.
T Consensus 187 --------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------------ 215 (259)
T cd07473 187 --------------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG------------ 215 (259)
T ss_pred --------------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC------------
Confidence 256679999986 47999999999997665
Q ss_pred CcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 483 SVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 483 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
..|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 216 -~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 -GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999984
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-40 Score=346.23 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=176.2
Q ss_pred ccccCcc-CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 83 GFSKGKL-SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 83 g~~~~~~-~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++..+|. ....|+||+|+|||+|||.+||+|.+.... .... ..+.
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~~~~--------~~~~ 48 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------LISG--------LTDQ 48 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------ccCC--------CCCC
Confidence 4455673 345699999999999999999999754211 0000 1245
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh----CCCcEEEEccC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA----DGVDIISVSLG 237 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~----~g~dVINlSlG 237 (734)
|+.+|||||||||+|..+. +| +.||||+|+|+.+|+++ ..+++++|.+|++ .++.+||||||
T Consensus 49 d~~gHGT~VAGiIaa~~n~----~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g 114 (277)
T cd04843 49 ADSDHGTAVLGIIVAKDNG----IG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTG 114 (277)
T ss_pred CCCCCcchhheeeeeecCC----Cc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcccc
Confidence 7889999999999987421 22 38999999999999975 3456777777777 34678899999
Q ss_pred CCCCCC-----CCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC------------C-CCCceEEecccccCceeEEE
Q 044427 238 SDFPFE-----YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS------------N-FAPWTLTVAASSIDRKFVAQ 299 (734)
Q Consensus 238 ~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~------------~-~ap~vitVga~~~~~~~~~~ 299 (734)
...... .....+..++.++.++|+++|+||||++....... + ..|++|+|||++.+
T Consensus 115 ~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~------ 188 (277)
T cd04843 115 GPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST------ 188 (277)
T ss_pred CCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC------
Confidence 873211 12234556777888999999999999986531110 0 12456666654321
Q ss_pred EEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceE
Q 044427 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLG 379 (734)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g 379 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEe
Q 044427 380 TIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITA 459 (734)
Q Consensus 380 ~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~A 459 (734)
....++.||++|+.. ||.|
T Consensus 189 -----------------------------------------------------~~~~~~~fSn~G~~v--------di~A 207 (277)
T cd04843 189 -----------------------------------------------------TGHTRLAFSNYGSRV--------DVYG 207 (277)
T ss_pred -----------------------------------------------------CCCccccccCCCCcc--------ceEc
Confidence 001378999999976 9999
Q ss_pred cCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 044427 460 PGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKA----A-HPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 460 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~ls~~~vk~~L~~TA~ 527 (734)
||++|+++....... ........|..++|||||||||||++|||++ + +|+|+++|||++|++|+.
T Consensus 208 PG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 208 WGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999998763211 0111123457899999999999999999974 3 499999999999999974
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=5.3e-41 Score=355.19 Aligned_cols=276 Identities=32% Similarity=0.476 Sum_probs=209.1
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccC
Q 044427 98 IIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGR 177 (734)
Q Consensus 98 ~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~ 177 (734)
+|||||||||++||+|....+ ...++.+.+.|.++. .......|..+|||||||||+|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-----------------~~~~~~~~~~~~~~~----~~~~~~~~~~~HGT~va~ii~~~ 59 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-----------------IWSKVPGGYNFVDGN----PNPSPSDDDNGHGTHVAGIIAGN 59 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-----------------EEEEEEEEEETTTTB----STTTSSSTSSSHHHHHHHHHHHT
T ss_pred CEEEEcCCcCCCChhHccCCc-----------------ccccccceeeccCCC----CCcCccccCCCccchhhhhcccc
Confidence 699999999999999972111 112344455666543 11245567889999999999998
Q ss_pred CCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHH-hCCCcEEEEccCCCC--CCCCCCCHHHHHHH
Q 044427 178 EVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAI-ADGVDIISVSLGSDF--PFEYFEDPIAIGSF 254 (734)
Q Consensus 178 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai-~~g~dVINlSlG~~~--~~~~~~~~~~~a~~ 254 (734)
. . .+. ....|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... ........+..+..
T Consensus 60 ~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~ 132 (282)
T PF00082_consen 60 G-G-NNG-----PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAID 132 (282)
T ss_dssp T-S-SSS-----SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHH
T ss_pred c-c-ccc-----cccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccc
Confidence 6 2 111 123899999999999998877677888999999999 899999999999832 11222334556666
Q ss_pred HHHhCCcEEEEcCCCCCCCCCC---cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCC
Q 044427 255 HAMKYGILTSNSAGNSGPDPYS---VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDA 331 (734)
Q Consensus 255 ~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~ 331 (734)
.+.++|+++|+||||+|..... .+...+++|+||+.+..
T Consensus 133 ~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------------------------- 174 (282)
T PF00082_consen 133 YAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------------------------- 174 (282)
T ss_dssp HHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------------------------
T ss_pred cccccCcceeeccccccccccccccccccccccccccccccc--------------------------------------
Confidence 7889999999999999876653 33445778888874321
Q ss_pred cccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHH
Q 044427 332 ANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILD 411 (734)
Q Consensus 332 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~ 411 (734)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEecc
Q 044427 412 YIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491 (734)
Q Consensus 412 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 491 (734)
+.++.||++|+.. .++++||||+|||.+|++.++... ...|..++|
T Consensus 175 -----------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~G 220 (282)
T PF00082_consen 175 -----------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSG 220 (282)
T ss_dssp -----------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEES
T ss_pred -----------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCc
Confidence 2467899996543 278999999999999988887620 145889999
Q ss_pred ccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 492 TSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
||||||+|||++|||+|++|+|++.+||.+|++||.+.........+..||||+||+.+|++
T Consensus 221 TS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 221 TSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999998832222247788999999999874
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-40 Score=339.47 Aligned_cols=216 Identities=21% Similarity=0.194 Sum_probs=167.3
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
+++|+|||||||||++||+|.+. +...++|...............|..|||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-----------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-----------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-----------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 78999999999999999999743 2222233322110000112235688999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-------CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC--CC
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-------CATADILAAFDDAIADGVDIISVSLGSDFPF--EY 244 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-------~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~--~~ 244 (734)
|+ |+||+|+|+.+|+++..+ ++..++++||+||+++|+||||||||..... ..
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 94 679999999999998643 4567899999999999999999999987321 11
Q ss_pred CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-Cc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCc
Q 044427 245 FEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGI 321 (734)
Q Consensus 245 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (734)
....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||.+.+
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~---------------------------- 172 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED---------------------------- 172 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC----------------------------
Confidence 2567888888999999999999999997764 33 3346899999986533
Q ss_pred eeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEe
Q 044427 322 SYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLI 401 (734)
Q Consensus 322 ~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 401 (734)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCC
Q 044427 402 SKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481 (734)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 481 (734)
+.++.||++|+.. |+.|||++|+++.+..
T Consensus 173 ---------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~---------- 201 (247)
T cd07491 173 ---------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP---------- 201 (247)
T ss_pred ---------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC----------
Confidence 2567789999877 9999999999987520
Q ss_pred CCcceEEeccccchhhHHHHHHHHHHhh
Q 044427 482 RSVSFNIISGTSMSCPHASGSAAYVKAA 509 (734)
Q Consensus 482 ~~~~y~~~sGTSmAaP~VAG~aALl~q~ 509 (734)
..+.|..++|||||||||||++|||++.
T Consensus 202 ~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 202 LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 1267999999999999999999999974
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.3e-39 Score=346.73 Aligned_cols=151 Identities=28% Similarity=0.335 Sum_probs=107.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
.|+|||||||||++||+|.+.-... .+ .+.....+.......+.+.....|..||||||||||+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia 64 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK------------NLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIA 64 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc------------ccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHh
Confidence 3899999999999999998531110 00 0000000111001111122445678999999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCCC-CHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC-------CCC
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGC-ATADILAAFDDAIADGVDIISVSLGSDFPFEY-------FED 247 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~-~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~-------~~~ 247 (734)
|+... .||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||....... ...
T Consensus 65 ~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~ 132 (294)
T cd07482 65 ANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYN 132 (294)
T ss_pred cCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhH
Confidence 87422 59999999999999988764 88899999999999999999999998632111 113
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 044427 248 PIAIGSFHAMKYGILTSNSAGNSGPDP 274 (734)
Q Consensus 248 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 274 (734)
.+..++..+.++|++||+||||+|...
T Consensus 133 ~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 133 AYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 456667778899999999999998654
No 33
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-40 Score=340.91 Aligned_cols=308 Identities=27% Similarity=0.382 Sum_probs=243.7
Q ss_pred CchhhHHHHHHHHhCCcc------ccCc------------ceEEEec---ceeeEEEEEeCHHHHHHHhcCCCeeEEEeC
Q 044427 10 PVASTHHSMLQNVLGSTL------SAKE------------SLVYSYG---RSFNGFAAKLTDEEVARFSETEGVISVIPN 68 (734)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~------~~~~------------~v~~~y~---~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~ 68 (734)
.-.+.|.+|++..+.... ++-. .+.+.|. .+|+|+.-..+.+-+..+++.|-++.+++.
T Consensus 94 ~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~ 173 (501)
T KOG1153|consen 94 QKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKD 173 (501)
T ss_pred HHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceeeeeccCcceeecccc
Confidence 456788899988885211 1111 1444554 378899999999999999999999999887
Q ss_pred cccccc--------cCCCcccccccc-------Cc----cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccc
Q 044427 69 HKLKIH--------TTRSWDFMGFSK-------GK----LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC 129 (734)
Q Consensus 69 ~~~~~~--------~~~s~~~~g~~~-------~~----~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~ 129 (734)
...+.. ...+|.+..+.. .| .....|+||...|+||||+.+||+|.+. +.|
T Consensus 174 ~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegR------a~w---- 243 (501)
T KOG1153|consen 174 SVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGR------AIW---- 243 (501)
T ss_pred cccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccc------eec----
Confidence 765532 233454433332 22 3445899999999999999999999854 223
Q ss_pred ccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC
Q 044427 130 TGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS 209 (734)
Q Consensus 130 ~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~ 209 (734)
|+..... ....|++||||||||+|++.. .|||-+++|+++||+++
T Consensus 244 ------------Ga~i~~~---------~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~ 288 (501)
T KOG1153|consen 244 ------------GATIPPK---------DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRS 288 (501)
T ss_pred ------------ccccCCC---------CcccccCCCcceeeeeeeccc--------------cccccccceEEEEEecc
Confidence 1111111 245689999999999999885 79999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHhC---------CCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcC
Q 044427 210 DG-CATADILAAFDDAIAD---------GVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVS 278 (734)
Q Consensus 210 ~g-~~~~~i~~ai~~ai~~---------g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~ 278 (734)
+| ++.+++++++|++++. +..|.|||+|+.. .-.+..|++.|.+.|+++++||||+..+.+ +.+
T Consensus 289 dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~-----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SP 363 (501)
T KOG1153|consen 289 DGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR-----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSP 363 (501)
T ss_pred CCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc-----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCc
Confidence 88 8999999999999986 4789999999982 346888999999999999999999987765 556
Q ss_pred CCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCc
Q 044427 279 NFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEG 358 (734)
Q Consensus 279 ~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 358 (734)
..+..+|||||++..
T Consensus 364 ass~~aITVGAst~~----------------------------------------------------------------- 378 (501)
T KOG1153|consen 364 ASSKKAITVGASTKN----------------------------------------------------------------- 378 (501)
T ss_pred ccccccEEecccccc-----------------------------------------------------------------
Confidence 678899999997643
Q ss_pred eEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCcee
Q 044427 359 KIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVV 438 (734)
Q Consensus 359 kiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a 438 (734)
++++
T Consensus 379 ----------------------------------------------------------------------------D~iA 382 (501)
T KOG1153|consen 379 ----------------------------------------------------------------------------DTIA 382 (501)
T ss_pred ----------------------------------------------------------------------------cchh
Confidence 3789
Q ss_pred eccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCC------
Q 044427 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN------ 512 (734)
Q Consensus 439 ~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~------ 512 (734)
.||+||++. ||.|||.+|+|+|.++. ......||||||+|||||++|..+..+|.
T Consensus 383 ~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~ 443 (501)
T KOG1153|consen 383 FFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFA 443 (501)
T ss_pred hhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhh
Confidence 999999999 99999999999999842 56789999999999999999999998883
Q ss_pred ---CCHHHHHHHHHhccc
Q 044427 513 ---WSPSSIKSALMTTAY 527 (734)
Q Consensus 513 ---ls~~~vk~~L~~TA~ 527 (734)
.++.++|..++.-..
T Consensus 444 n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 444 NDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hccCChHHhhhhhhcccc
Confidence 378888888776544
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-38 Score=324.49 Aligned_cols=221 Identities=21% Similarity=0.249 Sum_probs=172.9
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||||||++||+|.+.... .+.+..+. ...+.....|..||||||||||+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----------------------~~~~~~~~--~~~~~~~~~d~~gHGT~vAgiia 55 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----------------------GEVTIDLE--IIVVSAEGGDKDGHGTACAGIIK 55 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----------------------cccccccc--cccCCCCCCCCCCcHHHHHHHHH
Confidence 799999999999999999753211 11111000 00111445678899999999997
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHH
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSF 254 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~ 254 (734)
+. +|+++|+.+|+++..+ +...++++||+|+++++++|||||||... ......+..++.
T Consensus 56 ~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~ 115 (222)
T cd07492 56 KY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLE 115 (222)
T ss_pred cc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHH
Confidence 53 5999999999998776 77888999999999999999999999873 223356677788
Q ss_pred HHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCccc
Q 044427 255 HAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANY 334 (734)
Q Consensus 255 ~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~ 334 (734)
++.++|+++|+||||++.... .+...+++|+|++...+.
T Consensus 116 ~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------------------------- 154 (222)
T cd07492 116 YAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------------------------- 154 (222)
T ss_pred HHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------------------------
Confidence 888999999999999986543 255667888888743220
Q ss_pred CCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHh
Q 044427 335 SAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 335 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccc
Q 044427 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494 (734)
Q Consensus 415 ~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 494 (734)
.. +.+++ ++++.|||.+|+++.+. +.|..++||||
T Consensus 155 ---------------------~~---~~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~ 189 (222)
T cd07492 155 ---------------------PK---SFWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGNSF 189 (222)
T ss_pred ---------------------Cc---ccccC--------CceEEeCCCCeEeecCC-------------CCEEEeccHHH
Confidence 01 11133 35999999999998876 67999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 495 AaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
|||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 190 Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 190 AAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=6.7e-39 Score=341.90 Aligned_cols=251 Identities=20% Similarity=0.153 Sum_probs=180.4
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCC-
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP- 160 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~- 160 (734)
+++...|..+++|+||+|+|||||||++||+|.+.... ...++|..... ...+
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------~~~~~~~~~~~-----~~~~~ 79 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------EASYDFNDNDP-----DPTPR 79 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc---------------------cccccccCCCC-----CCCCc
Confidence 34455788899999999999999999999999754211 01122222211 0122
Q ss_pred -CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 161 -RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 161 -~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
.|..+|||||||||+|+.... . ...||||+|+|+.+|++... .....+..++.++.+ .++|||||||..
T Consensus 80 ~~~~~gHGT~vAgiiag~~~~~---~-----~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~ 149 (297)
T cd04059 80 YDDDNSHGTRCAGEIAAVGNNG---I-----CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPD 149 (297)
T ss_pred cccccccCcceeeEEEeecCCC---c-----ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCC
Confidence 278899999999999986431 1 12899999999999998754 333445556555543 569999999987
Q ss_pred CCCC---CCCCHHHHHHHHHHh-----CCcEEEEcCCCCCCCCCC----cCCCCCceEEecccccCceeEEEEEeCCCeE
Q 044427 240 FPFE---YFEDPIAIGSFHAMK-----YGILTSNSAGNSGPDPYS----VSNFAPWTLTVAASSIDRKFVAQAVLGNGIT 307 (734)
Q Consensus 240 ~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVga~~~~~~~~~~~~~~~g~~ 307 (734)
.... ........++.++.. +|++||+||||+|..... .....|++|+|||++.+
T Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-------------- 215 (297)
T cd04059 150 DDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-------------- 215 (297)
T ss_pred CCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--------------
Confidence 4221 122334445555543 699999999999974321 12235778888875422
Q ss_pred eeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCc
Q 044427 308 YPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 308 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~ 387 (734)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCC----
Q 044427 388 TDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVD---- 463 (734)
Q Consensus 388 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~---- 463 (734)
+.++.||++|+.. ++.|||..
T Consensus 216 -----------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 216 -----------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred -----------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 3567899999987 89999987
Q ss_pred ---EeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 464 ---ILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 464 ---I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 241 ~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66554431 0256788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=7.6e-38 Score=327.99 Aligned_cols=243 Identities=28% Similarity=0.365 Sum_probs=185.6
Q ss_pred CCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHH
Q 044427 93 QEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSS 172 (734)
Q Consensus 93 ~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAG 172 (734)
+|+||+|+|||+||+++||+|.+..... ..+..... .......|..+|||||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~-----------------------~~~~~~~~---~~~~~~~~~~~HGT~vag 54 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA-----------------------SYYVAVND---AGYASNGDGDSHGTHVAG 54 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc-----------------------cccccccc---ccCCCCCCCCChHHHHHH
Confidence 6999999999999999999998542210 00000000 001344568899999999
Q ss_pred HhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-------
Q 044427 173 TAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFE------- 243 (734)
Q Consensus 173 i~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~------- 243 (734)
||+|+... ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||......
T Consensus 55 iiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~ 125 (267)
T cd04848 55 VIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYK 125 (267)
T ss_pred HHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchh
Confidence 99998643 2348999999999999998764 56677889999999999999999999884221
Q ss_pred ----CCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC---------CCCCceEEecccccCceeEEEEEeCCCeEeee
Q 044427 244 ----YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS---------NFAPWTLTVAASSIDRKFVAQAVLGNGITYPG 310 (734)
Q Consensus 244 ----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (734)
.....+...+..+.++|+++|+||||++....... ...+++|+||+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~----------------- 188 (267)
T cd04848 126 GSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN----------------- 188 (267)
T ss_pred hhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-----------------
Confidence 24566677777888999999999999986543322 234677888775433
Q ss_pred eecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCc
Q 044427 311 LSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDL 390 (734)
Q Consensus 311 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 390 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceee--ccCCCCCCCCCCCCCCcEEecCCCEeecc
Q 044427 391 AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVS--FSSRGPNPITVDILKPDITAPGVDILASW 468 (734)
Q Consensus 391 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~Gpt~~~~~~~KPDI~APG~~I~sa~ 468 (734)
+.... ||++|+.. -.+++.|||.+|+++.
T Consensus 189 --------------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~ 219 (267)
T cd04848 189 --------------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTD 219 (267)
T ss_pred --------------------------------------------CCcccccccccchhh-----hhheeecCcCceeecc
Confidence 12223 47777643 2357999999999987
Q ss_pred CCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 469 SPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 469 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
+.. ...|..++|||||||+|||++|||+|++|.|++++||++|++||+
T Consensus 220 ~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 220 PDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 731 167899999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=320.37 Aligned_cols=338 Identities=22% Similarity=0.348 Sum_probs=260.5
Q ss_pred chhhHHHHHHHHhCCccc------cCcceEEEecceeeEEEEEeCH-----HHHHHHhcCCCeeEEEeCcccccccC---
Q 044427 11 VASTHHSMLQNVLGSTLS------AKESLVYSYGRSFNGFAAKLTD-----EEVARFSETEGVISVIPNHKLKIHTT--- 76 (734)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~------~~~~v~~~y~~~~ng~s~~~~~-----~~i~~L~~~p~V~~v~~~~~~~~~~~--- 76 (734)
.+..|+.++++.+.+..- .+...--.|-..|.-+-++-.. -+|++|..+|.|+.|.|.+.......
T Consensus 61 ~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~ 140 (1033)
T KOG4266|consen 61 PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPD 140 (1033)
T ss_pred cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccc
Confidence 456788888888863332 2233334565566666555432 25789999999999999876432100
Q ss_pred ------------------C------------Cc--c----------ccccccCccCCCCCCCCEEEEEccCCCCCCCCCC
Q 044427 77 ------------------R------------SW--D----------FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFN 114 (734)
Q Consensus 77 ------------------~------------s~--~----------~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~ 114 (734)
. .| . .++++..|..|+||++|+|||.|||+.-+||.|+
T Consensus 141 ~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFr 220 (1033)
T KOG4266|consen 141 GKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFR 220 (1033)
T ss_pred cCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCcccc
Confidence 0 00 0 1223335799999999999999999999999997
Q ss_pred CCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceee
Q 044427 115 DKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARG 194 (734)
Q Consensus 115 ~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~G 194 (734)
.- ..-.++++. ....|.-||||.|||+|||... ..|
T Consensus 221 nv------------------------KERTNWTNE--------~tLdD~lgHGTFVAGvia~~~e------------c~g 256 (1033)
T KOG4266|consen 221 NV------------------------KERTNWTNE--------DTLDDNLGHGTFVAGVIAGRNE------------CLG 256 (1033)
T ss_pred ch------------------------hhhcCCcCc--------cccccCcccceeEeeeeccchh------------hcc
Confidence 21 111233333 4566789999999999998852 279
Q ss_pred ecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 044427 195 GVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD 273 (734)
Q Consensus 195 vAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~ 273 (734)
.||+++|+++|||-+.. .+.+++++|+.||+...+||+|+|+|++ .+.+.++-.-+.++.+.+|++|.|+||+|+-
T Consensus 257 fa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPL 333 (1033)
T KOG4266|consen 257 FASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPL 333 (1033)
T ss_pred cCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcc
Confidence 99999999999998765 7889999999999999999999999998 5777888777778889999999999999998
Q ss_pred CCCcCCCCC--ceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccC
Q 044427 274 PYSVSNFAP--WTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADAL 351 (734)
Q Consensus 274 ~~~~~~~ap--~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~ 351 (734)
.++..+++. .++.||.-
T Consensus 334 YGTLNNPaDQsDViGVGGI------------------------------------------------------------- 352 (1033)
T KOG4266|consen 334 YGTLNNPADQSDVIGVGGI------------------------------------------------------------- 352 (1033)
T ss_pred eeecCCcccccceeeeccc-------------------------------------------------------------
Confidence 888777653 33333321
Q ss_pred CCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeec
Q 044427 352 NSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKD 431 (734)
Q Consensus 352 ~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 431 (734)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeccCCCCCCC----CCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHH
Q 044427 432 AMAPKVVSFSSRGPNPI----TVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVK 507 (734)
Q Consensus 432 ~~~~~~a~fSS~Gpt~~----~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 507 (734)
.-.+.++.|||||-+.. ..||+||||++-|.+|...... .+-..+||||.|+|.|||+++||.
T Consensus 353 dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLv 419 (1033)
T KOG4266|consen 353 DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLV 419 (1033)
T ss_pred cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeeeEe
Confidence 12247999999997653 4789999999999999877665 667889999999999999999997
Q ss_pred h----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 508 A----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 508 q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+ +.--++|+.+|.+|+.+|.++.... -+.||+|++|+.++.+
T Consensus 420 S~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 420 SVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcchhHHHHHH
Confidence 6 3445799999999999999988753 4789999999998876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=329.45 Aligned_cols=356 Identities=23% Similarity=0.270 Sum_probs=234.9
Q ss_pred CCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCC-C--CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044427 164 EGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSD-G--CATADILAAFDDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 164 ~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~ 240 (734)
..|||||||||+|+..+... ..||||+|+|+++++-+.. | .+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999865432 3899999999999996542 2 45667899999999999999999999986
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCC---CCceEEecccccCceeEEEEEeCCCeEeeeeecccCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNF---APWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (734)
..+.....++.+-..+.++|+++|+||||+||...+++.+ ...+|.|||.-.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 5555556666655445589999999999999998877654 3478888874221000
Q ss_pred CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcc
Q 044427 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLP 397 (734)
Q Consensus 318 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 397 (734)
T Consensus 441 -------------------------------------------------------------------------------- 440 (1304)
T KOG1114|consen 441 -------------------------------------------------------------------------------- 440 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCC
Q 044427 398 ATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLD 477 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 477 (734)
...... ..+....+..+|||||+. ||-+-..|+|||+.|-+. |...
T Consensus 441 ---------~a~y~~-----------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----- 486 (1304)
T KOG1114|consen 441 ---------QAEYSV-----------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----- 486 (1304)
T ss_pred ---------Hhhhhh-----------------hccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh-----
Confidence 000000 001134688899999999 999999999999998664 2210
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
-..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++.. ..+.||.|+|++.+|.+
T Consensus 487 -----lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 487 -----LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred -----hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 14567899999999999999999965 567899999999999999999876 37999999999999976
Q ss_pred CceeccCCchhhhhhhhccCCCcceeEEeccC-CCcccCCCCCCCCCCCCCCceeeeecCCCc--eEEEEEEEEE----e
Q 044427 554 PGLVYDATEVDYVNFLCKQGYNTTIIRQITGD-NSSVCNSTEPGRAWDLNYPSFSLAIEDGQP--IYGVFTRTVT----N 626 (734)
Q Consensus 554 ~~lv~~~~~~d~~~~l~~~~~~~~~~~~~~~~-~~~~c~~~~~~~~~~ln~psi~~~~~~~~~--~~~~~~~tv~----N 626 (734)
|+.- .+.-=+..++.+... .. +|... +...++.. -...+++-|. |
T Consensus 558 -----------yL~q--~~~~f~~~l~f~~v~VgN-~~srG--------------IyLRep~~~~~p~e~~i~VePiF~~ 609 (1304)
T KOG1114|consen 558 -----------YLAQ--SDFSFPNALGFINVNVGN-SCSRG--------------IYLREPTQVCSPSEHTIGVEPIFEN 609 (1304)
T ss_pred -----------HHHH--hhhcCCccceeEEEeecc-ccccc--------------eEecCCcccCCccccceeccccccC
Confidence 2110 000001111111111 01 23211 00000000 0011122111 1
Q ss_pred c-CC--CCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEc-----CceEEEeEEEE
Q 044427 627 V-GS--PNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWED-----GVHQVRSPVVI 698 (734)
Q Consensus 627 ~-~~--~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~ 698 (734)
- .+ +...|.+...-..-..+.--|+.|.+ .++.+.|.|+|+++... .+..++.|.-.| .++.+|||+.|
T Consensus 610 ~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~-~G~hy~eV~gyD~~~p~~gplFrIPVTV 686 (1304)
T KOG1114|consen 610 GEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLA-PGVHYTEVLGYDTANPSRGPLFRIPVTV 686 (1304)
T ss_pred ccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCC-CCcceEEEEEeecCCcccCceEEeeeEE
Confidence 0 01 11223322211111112223777777 47789999999999865 557777777654 46789999998
Q ss_pred EecC
Q 044427 699 YNIL 702 (734)
Q Consensus 699 ~~~~ 702 (734)
....
T Consensus 687 i~P~ 690 (1304)
T KOG1114|consen 687 IKPK 690 (1304)
T ss_pred Eccc
Confidence 8654
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.9e-33 Score=284.33 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=142.5
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHH--HhCCCcEEEEccC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDA--IADGVDIISVSLG 237 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~a--i~~g~dVINlSlG 237 (734)
..|..+|||||||||||. .|++|+++|+..++.. .....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999987 4567999998765521 1233466788888 5679999999999
Q ss_pred CCCCCC-----CCCCHHHHHHHHHHhC-CcEEEEcCCCCCCCCC-----CcCCCCCceEEecccccCceeEEEEEeCCCe
Q 044427 238 SDFPFE-----YFEDPIAIGSFHAMKY-GILTSNSAGNSGPDPY-----SVSNFAPWTLTVAASSIDRKFVAQAVLGNGI 306 (734)
Q Consensus 238 ~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~ap~vitVga~~~~~~~~~~~~~~~g~ 306 (734)
...... ...+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||.+....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 874332 1234566677776655 9999999999997532 22344678899998653310
Q ss_pred EeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCC
Q 044427 307 TYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSV 386 (734)
Q Consensus 307 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~ 386 (734)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCC--CCCCCCCCCCCCcEEecCCCE
Q 044427 387 FTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSR--GPNPITVDILKPDITAPGVDI 464 (734)
Q Consensus 387 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~--Gpt~~~~~~~KPDI~APG~~I 464 (734)
.-..+.||++ +|+. ++..||||+|||++|
T Consensus 164 -----------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di~APG~~i 194 (247)
T cd07488 164 -----------------------------------------------RFFASDVSNAGSEINS--YGRRKVLIVAPGSNY 194 (247)
T ss_pred -----------------------------------------------cceecccccccCCCCC--CCCceeEEEEeeeeE
Confidence 0023445554 4544 788999999999999
Q ss_pred eeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 044427 465 LASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWS------PSSIKSALMTTA 526 (734)
Q Consensus 465 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls------~~~vk~~L~~TA 526 (734)
++ +. +.|..++|||||||||||++|||++++|++. -.++|.+|++|+
T Consensus 195 ~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 195 NL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 98 32 5688999999999999999999999988765 446777777653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.1e-30 Score=268.07 Aligned_cols=234 Identities=31% Similarity=0.416 Sum_probs=176.5
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
|+|+|||+|++++||+|..... . .....++.... .......+..+||||||++|++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~----~~~~~~~~~~~HGt~va~~i~~ 56 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFG---------G-----------GDGGNDDDDNE----NGPTDPDDGNGHGTHVAGIIAA 56 (241)
T ss_pred CEEEEEeCCCCCCCcchhcccc---------C-----------cccccccccCc----CCCCCCCCCCCcHHHHHHHHhc
Confidence 6899999999999998721100 0 00001111110 0002445678999999999999
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHH-hCCCcEEEEccCCCCCCCCCCCHHHHHHH
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAI-ADGVDIISVSLGSDFPFEYFEDPIAIGSF 254 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai-~~g~dVINlSlG~~~~~~~~~~~~~~a~~ 254 (734)
...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||..... ....+...+.
T Consensus 57 ~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~ 125 (241)
T cd00306 57 SANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAID 125 (241)
T ss_pred CCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHH
Confidence 864321 17999999999999987765 66788999999999 89999999999998422 4556777777
Q ss_pred HHHhC-CcEEEEcCCCCCCCCC---CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCC
Q 044427 255 HAMKY-GILTSNSAGNSGPDPY---SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGD 330 (734)
Q Consensus 255 ~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~ 330 (734)
++..+ |+++|+|+||.+.... ..+...+++|+||+.+...
T Consensus 126 ~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------------------------ 169 (241)
T cd00306 126 YALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------------------------ 169 (241)
T ss_pred HHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC------------------------------------
Confidence 88877 9999999999998775 4666789999999865431
Q ss_pred CcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHH
Q 044427 331 AANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDIL 410 (734)
Q Consensus 331 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~ 410 (734)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEEecceeecCCCCcee-eccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEe
Q 044427 411 DYIRSTEYPIATIMFGETWKDAMAPKVV-SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNII 489 (734)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 489 (734)
... .++++| .|||+.|||.++...... ....+..+
T Consensus 170 -------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-----------~~~~~~~~ 205 (241)
T cd00306 170 -------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-----------GGGGYATL 205 (241)
T ss_pred -------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-----------CCCCeEee
Confidence 111 233444 367999999998875111 13789999
Q ss_pred ccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 490 SGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 490 sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
+|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 206 ~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 206 SGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-23 Score=238.10 Aligned_cols=267 Identities=27% Similarity=0.388 Sum_probs=194.9
Q ss_pred CccC--CCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC-CCCCC
Q 044427 87 GKLS--SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH-SPRDS 163 (734)
Q Consensus 87 ~~~~--~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~-~~~D~ 163 (734)
.|.. +.+|+|++|+|||+||+..||+|.+... ..++|.+... . ...|.
T Consensus 132 ~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~-----------------------~~~~~~~~~~------~~~~~d~ 182 (508)
T COG1404 132 LVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV-----------------------AGGDFVDGDP------EPPFLDD 182 (508)
T ss_pred ccccccCCCCCCeEEEEeccCCCCCChhhhcccc-----------------------cccccccCCC------CCCCCCC
Confidence 4444 8999999999999999999999975421 0123333221 1 24688
Q ss_pred CCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCC-C-CCHHHHHHHHHHHHhCC--CcEEEEccCCC
Q 044427 164 EGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSD-G-CATADILAAFDDAIADG--VDIISVSLGSD 239 (734)
Q Consensus 164 ~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g-~~~~~i~~ai~~ai~~g--~dVINlSlG~~ 239 (734)
.+|||||++++++....+ .....|+||+++++.+|++... + ....+++++|+++++.+ +++||||+|..
T Consensus 183 ~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~ 255 (508)
T COG1404 183 NGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS 255 (508)
T ss_pred CCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC
Confidence 999999999999843111 1123899999999999999875 5 66777899999999999 99999999986
Q ss_pred CCCCCCCCHHHHHHHHHHhCC-cEEEEcCCCCCCCCCC----cCCCC--CceEEecccccCceeEEEEEeCCCeEeeeee
Q 044427 240 FPFEYFEDPIAIGSFHAMKYG-ILTSNSAGNSGPDPYS----VSNFA--PWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (734)
........+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 256 -~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~-------------------- 314 (508)
T COG1404 256 -LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL-------------------- 314 (508)
T ss_pred -ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC--------------------
Confidence 23334455666777777777 9999999999876521 11111 23344443211
Q ss_pred cccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCccc
Q 044427 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAF 392 (734)
Q Consensus 313 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 392 (734)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEee-----c
Q 044427 393 SYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILA-----S 467 (734)
Q Consensus 393 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~s-----a 467 (734)
.+.++.||++|+.. ..++.|||.+|.+ .
T Consensus 315 -----------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~ 347 (508)
T COG1404 315 -----------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNT 347 (508)
T ss_pred -----------------------------------------CCccccccccCCCC------CcceeCCCcccccccccee
Confidence 13678899999751 2399999999988 4
Q ss_pred cCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccc--ccCCCcccCCCCCCCC
Q 044427 468 WSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP-NWSPSSIKSALMTTAYV--MDSRKQEDLEFAYGSG 544 (734)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~ls~~~vk~~L~~TA~~--~~~~~~~~~~~~~G~G 544 (734)
+++. ...|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....++.|
T Consensus 348 ~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 411 (508)
T COG1404 348 LPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG-----VDNLVGGG 411 (508)
T ss_pred eeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc-----cccccccC
Confidence 4431 02499999999999999999999999999 89999999999988874 222 25667777
Q ss_pred ccCccccCC
Q 044427 545 HINPAQAID 553 (734)
Q Consensus 545 ~vn~~~Al~ 553 (734)
..+...+..
T Consensus 412 ~~~~~~~~~ 420 (508)
T COG1404 412 LANLDAAAT 420 (508)
T ss_pred ccccccccc
Confidence 666655544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.5e-19 Score=181.55 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=100.5
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCC--CC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRD--SE 164 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D--~~ 164 (734)
+|..|++|++|+++|+|.||||.||++..+ ..--..++|..++ |.+++.-.| .+
T Consensus 153 awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssnd---pfpyprytddwfn 208 (629)
T KOG3526|consen 153 AWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSND---PFPYPRYTDDWFN 208 (629)
T ss_pred HHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCC---CCCCCcccchhhh
Confidence 689999999999999999999999999722 2223345555442 111111112 57
Q ss_pred CChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCCC
Q 044427 165 GHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSDFPFE 243 (734)
Q Consensus 165 gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~~~~~ 243 (734)
.|||.|||-+++...++ ..| .|||.+.++..+|+++. -+..|+++|-..--+ ..++|-+-|||......
T Consensus 209 shgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred ccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 89999999888776543 233 69999999999999863 445566554322111 34789999999875333
Q ss_pred CCCCH---HHHHHHHHH-----hCCcEEEEcCCCCCCC
Q 044427 244 YFEDP---IAIGSFHAM-----KYGILTSNSAGNSGPD 273 (734)
Q Consensus 244 ~~~~~---~~~a~~~a~-----~~Gi~vV~AAGN~G~~ 273 (734)
..+.+ ..+++.+-+ ..|-++|.|.|..|..
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 33333 222332323 2467899999988754
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.69 E-value=1.6e-16 Score=173.60 Aligned_cols=102 Identities=24% Similarity=0.233 Sum_probs=80.0
Q ss_pred cceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCCC--CCCCHHHHHHHHHHhCCcEEE
Q 044427 190 GTARGGVPNARISMYKVCWSDGCATADILAAFDDAIAD---GVDIISVSLGSDFPFE--YFEDPIAIGSFHAMKYGILTS 264 (734)
Q Consensus 190 g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~---g~dVINlSlG~~~~~~--~~~~~~~~a~~~a~~~Gi~vV 264 (734)
..+.||||+|+|+.|++++.. ..+++.++.+++.+ +++|||+|||...... .+...+..++.+|..+||+||
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 345899999999999997542 45678888888887 9999999999873210 123456777778889999999
Q ss_pred EcCCCCCCCCC-----------CcCCCCCceEEecccccCc
Q 044427 265 NSAGNSGPDPY-----------SVSNFAPWTLTVAASSIDR 294 (734)
Q Consensus 265 ~AAGN~G~~~~-----------~~~~~ap~vitVga~~~~~ 294 (734)
+|+||+|.... ..+...|++++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 2356689999999987653
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.93 E-value=4.8e-09 Score=99.29 Aligned_cols=110 Identities=25% Similarity=0.349 Sum_probs=84.3
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc---
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL--- 390 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~--- 390 (734)
.....++++.+. |....+...+++|||+||+|+.+ ..+++++||.|+|++|+.....
T Consensus 24 ~~~~~~lv~~g~---------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~ 88 (143)
T cd02133 24 LGKTYELVDAGL---------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGT 88 (143)
T ss_pred CCcEEEEEEccC---------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCccccc
Confidence 345778888654 44445556789999999998875 6788999999999999876533
Q ss_pred -ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCC
Q 044427 391 -AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNP 447 (734)
Q Consensus 391 -~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~ 447 (734)
.....+|++.|+.++|..|++++.+ ++++.+..+....+.+.++.||||||+.
T Consensus 89 ~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 89 LGEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 1134689999999999999999987 4555555544455667899999999973
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.91 E-value=7.5e-09 Score=95.79 Aligned_cols=115 Identities=37% Similarity=0.562 Sum_probs=89.6
Q ss_pred EEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc------chhhh
Q 044427 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD------GSDIL 373 (734)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~------~~~~~ 373 (734)
++++||+.+.|++++.... ..+++++..... .......|.+..++..+++||||+|+|+.+ ..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~------~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS------GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC------CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6789999999999997554 456777633211 123347899888888899999999998764 56789
Q ss_pred ccCceEEEEecCCccCc---ccCcCcceEEeeccchHHHHHHHhcCCCcEEE
Q 044427 374 AVNGLGTIMADSVFTDL---AFSYPLPATLISKENGQDILDYIRSTEYPIAT 422 (734)
Q Consensus 374 ~~Ga~g~i~~n~~~~~~---~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 422 (734)
++||.|+|++++..... .....+|++.|+.+++..|++|++++..++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999999876443 23468999999999999999999988766554
No 46
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.70 E-value=1.9e-07 Score=84.52 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=57.4
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeC--------CCce-----------EEEEEcCeeEEeeCCcEEEEEEEEEcccc---C
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYM--------PASV-----------SVDVEPQSLSFSAVGEQKSFTVKVTGPKI---A 674 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~--------~~g~-----------~v~v~p~~~~~~~~g~~~~~~vt~~~~~~---~ 674 (734)
..+++++|+|.|+++.+|+++... ..|. .+...+.+|++ ++|++++|+|+++++.. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCcc
Confidence 588999999999999999997651 1111 56777889999 68999999999999652 3
Q ss_pred CCCceEEEEEEEc-Cc-eEEEeEEE
Q 044427 675 QQPIMSGAIVWED-GV-HQVRSPVV 697 (734)
Q Consensus 675 ~~~~~~G~i~~~~-~~-~~v~~P~~ 697 (734)
...+++|||.|++ .. ..+++||+
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 4789999999996 34 48999996
No 47
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.35 E-value=6.9e-07 Score=75.84 Aligned_cols=64 Identities=38% Similarity=0.650 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHhCCc----cccCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCcccccc
Q 044427 11 VASTHHSMLQNVLGST----LSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIH 74 (734)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~ 74 (734)
..+.|.+++.+++.+. .....++.++|+..||||+++++++++++|+++|+|++|+|++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 15 SFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred hHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 3667777777654421 356889999999899999999999999999999999999999988764
No 48
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.7e-06 Score=94.33 Aligned_cols=160 Identities=17% Similarity=0.134 Sum_probs=99.7
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
+.+...|..+++|+++.|+|.|+|++..||+.... ....+..++..... .+.+-.+..
T Consensus 20 ~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~-~p~~~~~~~ 77 (431)
T KOG3525|consen 20 LNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDN-DPEPRCDGT 77 (431)
T ss_pred ceeeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCC-CcccccCCC
Confidence 34455788999999999999999999999999732 11223333333221 111112222
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~~ 240 (734)
....|||-|++-.+....... -..|+++++++..++++.. ...+...+...... .-+++-..|||...
T Consensus 78 ~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pdd 146 (431)
T KOG3525|consen 78 NENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPDD 146 (431)
T ss_pred CccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCccc
Confidence 357899999999998862211 2279999999999998653 11122333322222 34789999999875
Q ss_pred CCCCCCC---HHHHHHHHH-----HhCCcEEEEcCCCCCCCC
Q 044427 241 PFEYFED---PIAIGSFHA-----MKYGILTSNSAGNSGPDP 274 (734)
Q Consensus 241 ~~~~~~~---~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 274 (734)
....... ....+...+ ..+|-+.|+|.||.|...
T Consensus 147 d~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 147 DGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 3222222 222233322 356889999999987654
No 49
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.7e-06 Score=98.06 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=57.5
Q ss_pred ceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC--CCCC--CCCHHHHHHHHHHhCCcEEEE
Q 044427 191 TARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGV-DIISVSLGSDF--PFEY--FEDPIAIGSFHAMKYGILTSN 265 (734)
Q Consensus 191 ~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~-dVINlSlG~~~--~~~~--~~~~~~~a~~~a~~~Gi~vV~ 265 (734)
...-+||+|+|..+-+ +.+ ....+..|+.+....-+ -+|-.||+... ..+. .-+.+......|.++|+.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3467899999998866 222 22222233333222211 23335665431 1222 233445555577899999999
Q ss_pred cCCCCCCCCCC--------cCCCCCceEEecc
Q 044427 266 SAGNSGPDPYS--------VSNFAPWTLTVAA 289 (734)
Q Consensus 266 AAGN~G~~~~~--------~~~~ap~vitVga 289 (734)
|+|.+|....+ .+..+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876643 3456899999998
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.18 E-value=4.4e-06 Score=76.78 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=65.3
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc------c--cCcCcceEEeeccchHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL------A--FSYPLPATLISKENGQDI 409 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~------~--~~~~~p~~~i~~~~~~~l 409 (734)
...|.+..+...+++|||+||.|+.+ ..+++++||.++|++|+..... . ....+|.++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 46799888888899999999999875 6789999999999999876321 1 345699999999999999
Q ss_pred HHHHhcCCCcEE
Q 044427 410 LDYIRSTEYPIA 421 (734)
Q Consensus 410 ~~~~~~~~~~~~ 421 (734)
++++.++.+.++
T Consensus 109 ~~~l~~g~~v~~ 120 (122)
T cd04816 109 RRRLGAGETLEL 120 (122)
T ss_pred HHHHcCCCEEEE
Confidence 999988765444
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.99 E-value=8.3e-06 Score=72.07 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=57.2
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCcc-------CcccCcCcceEEeeccchHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFT-------DLAFSYPLPATLISKENGQDIL 410 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~-------~~~~~~~~p~~~i~~~~~~~l~ 410 (734)
...|.+......+++||||||.|+.+ ..+++++||.|+|++|.... .......||+++|+.++++.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677888889999999999999875 78999999999999992211 1145778999999999999999
Q ss_pred HHH
Q 044427 411 DYI 413 (734)
Q Consensus 411 ~~~ 413 (734)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 52
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.95 E-value=3e-05 Score=72.57 Aligned_cols=80 Identities=13% Similarity=0.007 Sum_probs=65.9
Q ss_pred ccccccccC--CCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCc-c--Cc----ccCcCcceEEeeccchHH
Q 044427 343 ARFCAADAL--NSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVF-T--DL----AFSYPLPATLISKENGQD 408 (734)
Q Consensus 343 ~~~c~~~~~--~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~-~--~~----~~~~~~p~~~i~~~~~~~ 408 (734)
...|.+... ...++.|+|+|+.|+.| ..+++++||.++|++|+.. . .+ .....+|.++|+..+|+.
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~ 123 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGME 123 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHH
Confidence 567998776 56789999999999976 7899999999999999886 2 11 223478999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 044427 409 ILDYIRSTEYPIAT 422 (734)
Q Consensus 409 l~~~~~~~~~~~~~ 422 (734)
|+.++.++.+.+++
T Consensus 124 l~~~l~~G~~Vtv~ 137 (138)
T cd02122 124 ILELLERGISVTMV 137 (138)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999988766554
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.94 E-value=2.2e-05 Score=71.73 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=62.7
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC--cc-----cCcCcceEEeeccchHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD--LA-----FSYPLPATLISKENGQDIL 410 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~--~~-----~~~~~p~~~i~~~~~~~l~ 410 (734)
...|.+.... .+++|||+||.|+.+ ..+++++||.|+|++|+.... +. ....+|++.|+.+++..|+
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 5679887763 469999999998764 667899999999999887642 11 2346999999999999999
Q ss_pred HHHhcCCCcEEE
Q 044427 411 DYIRSTEYPIAT 422 (734)
Q Consensus 411 ~~~~~~~~~~~~ 422 (734)
+|++.+...+++
T Consensus 106 ~~l~~g~~v~v~ 117 (118)
T cd04818 106 AALAAGGTVTVT 117 (118)
T ss_pred HHHhcCCcEEEe
Confidence 999987655443
No 54
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.92 E-value=3.2e-05 Score=70.12 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=62.1
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-------ccCcCcceEEeeccchHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-------AFSYPLPATLISKENGQDIL 410 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-------~~~~~~p~~~i~~~~~~~l~ 410 (734)
...|.+..+...+++|||+|++|+.+ ..+++++||.++|++|+..... .....||+++|+.++|+.|+
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 46799888888889999999999986 7899999999999999876311 14567899999999999999
Q ss_pred HHHhcC
Q 044427 411 DYIRST 416 (734)
Q Consensus 411 ~~~~~~ 416 (734)
+.+.+.
T Consensus 110 ~~l~~~ 115 (120)
T cd02129 110 QTFGDS 115 (120)
T ss_pred HHhccC
Confidence 887643
No 55
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.91 E-value=7.7e-05 Score=68.55 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=62.0
Q ss_pred cccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCC-ccCc------ccCcCcceEEeeccchHHHHH
Q 044427 344 RFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSV-FTDL------AFSYPLPATLISKENGQDILD 411 (734)
Q Consensus 344 ~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~-~~~~------~~~~~~p~~~i~~~~~~~l~~ 411 (734)
..|.+..+ +.+++|||+|++|+.+ ..+++++||.++|++|+. .... .....||++.|+.++|..|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35876555 3579999999999865 788999999999999987 3222 234569999999999999999
Q ss_pred HHhcCCCcEEE
Q 044427 412 YIRSTEYPIAT 422 (734)
Q Consensus 412 ~~~~~~~~~~~ 422 (734)
.+.++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988766543
No 56
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.84 E-value=5.7e-05 Score=68.75 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=64.4
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC----c---c----cCcCcceEEeeccch
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD----L---A----FSYPLPATLISKENG 406 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~----~---~----~~~~~p~~~i~~~~~ 406 (734)
...|.+.. ...+++|+|+|++|+.| ..+++++||.++|++|+.... + . ....||+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 45798643 35679999999999886 778999999999999986531 1 1 235799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 044427 407 QDILDYIRSTEYPIATI 423 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~~i 423 (734)
+.|+..+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776655
No 57
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.84 E-value=4.4e-05 Score=70.30 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=63.5
Q ss_pred cccccccc--CCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc----c-----cCcCcceEEeeccch
Q 044427 343 ARFCAADA--LNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL----A-----FSYPLPATLISKENG 406 (734)
Q Consensus 343 ~~~c~~~~--~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~----~-----~~~~~p~~~i~~~~~ 406 (734)
...|.+.. +...+++||||||.|+.+ ..+++++||.|+|++++..... . ....+|++.|+.+++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 45688776 677889999999998764 6789999999999999876321 1 345799999999999
Q ss_pred HHHHHHHhcCCCcEE
Q 044427 407 QDILDYIRSTEYPIA 421 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~ 421 (734)
..|++++.++.+.++
T Consensus 110 ~~l~~~~~~~~~v~~ 124 (126)
T cd00538 110 EALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHhcCCceEE
Confidence 999999987665443
No 58
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.78 E-value=0.00017 Score=66.81 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=61.1
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc----ccCcCcceEEeeccchHHHHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL----AFSYPLPATLISKENGQDILDYI 413 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~----~~~~~~p~~~i~~~~~~~l~~~~ 413 (734)
...|.+.+.+..+++|||+|++|+.| ..+++++||.++|++|+....+ .+...+|.+.+ .++|+.|++.+
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l 119 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDAL 119 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHH
Confidence 56899876666689999999999875 7889999999999999876433 23334566666 99999999999
Q ss_pred hcCCCcEE
Q 044427 414 RSTEYPIA 421 (734)
Q Consensus 414 ~~~~~~~~ 421 (734)
.++...++
T Consensus 120 ~~G~~vtv 127 (129)
T cd02124 120 AAGSNVTV 127 (129)
T ss_pred hcCCeEEE
Confidence 87765444
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.75 E-value=0.00015 Score=68.20 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=61.2
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-----c----cCcCcceEEeeccchHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-----A----FSYPLPATLISKENGQD 408 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-----~----~~~~~p~~~i~~~~~~~ 408 (734)
...|.+.. .+++|||+|+.|+.| ..+++++||.++|++|+..... . ....||+++|+..+|..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 45798754 378999999999986 7899999999999998875321 1 13579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 044427 409 ILDYIRSTEYPIA 421 (734)
Q Consensus 409 l~~~~~~~~~~~~ 421 (734)
|+..+.++...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
No 60
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.73 E-value=8.6e-05 Score=68.56 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=61.1
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC------c------c---cCcCcceEEee
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD------L------A---FSYPLPATLIS 402 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~------~------~---~~~~~p~~~i~ 402 (734)
...|.+... ..+++|||+|++|+.| ..+++++||.++|++|+.... + . +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986544 5578999999999875 789999999999999876531 1 1 24578999999
Q ss_pred ccchHHHHHHHhcCCCcE
Q 044427 403 KENGQDILDYIRSTEYPI 420 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~ 420 (734)
..+|..|+..+..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998876544
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.66 E-value=0.00012 Score=67.48 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=62.3
Q ss_pred ccccccccCC--CC----CcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc--------------ccCcCcc
Q 044427 343 ARFCAADALN--SY----KVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL--------------AFSYPLP 397 (734)
Q Consensus 343 ~~~c~~~~~~--~~----~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~--------------~~~~~~p 397 (734)
...|.+.... +. ...++|+|++|+.| ..+++++||.++|++|+....+ .....||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578865542 22 37789999999975 8899999999999999876432 1234689
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEE
Q 044427 398 ATLISKENGQDILDYIRSTEYPIAT 422 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~ 422 (734)
+++|+..+|+.|+..+.++...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988765543
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.60 E-value=0.00013 Score=66.24 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=59.2
Q ss_pred cccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC-c--------ccCcCcceEEeeccchH
Q 044427 342 IARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD-L--------AFSYPLPATLISKENGQ 407 (734)
Q Consensus 342 ~~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~-~--------~~~~~~p~~~i~~~~~~ 407 (734)
....|.+. +..+++|||+|+.|+.| ..+++++||.++|++|+.... + .....+|+++|+.+++.
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35679765 56789999999999976 788999999999999877632 1 23457999999999999
Q ss_pred HHHHHHhcC
Q 044427 408 DILDYIRST 416 (734)
Q Consensus 408 ~l~~~~~~~ 416 (734)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999887654
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.44 E-value=0.00028 Score=65.86 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCCCcCceEEEEeeCCc----------chhhhccCceEEEEecCC--ccCc----c---cCcCcceEEeeccchHHHHH
Q 044427 351 LNSYKVEGKIVFCESLLD----------GSDILAVNGLGTIMADSV--FTDL----A---FSYPLPATLISKENGQDILD 411 (734)
Q Consensus 351 ~~~~~~~gkiv~~~~~~~----------~~~~~~~Ga~g~i~~n~~--~~~~----~---~~~~~p~~~i~~~~~~~l~~ 411 (734)
+...+++|||+|++|+.+ .++++++||.|+|+||+. ...+ . ....||++.|+.++|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445579999999999865 568999999999999998 4322 1 14689999999999999999
Q ss_pred HHhcC
Q 044427 412 YIRST 416 (734)
Q Consensus 412 ~~~~~ 416 (734)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87543
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.42 E-value=0.0013 Score=60.92 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=62.9
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc-------chhhhccCceEEEEecCCccCc--
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD-------GSDILAVNGLGTIMADSVFTDL-- 390 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~-------~~~~~~~Ga~g~i~~n~~~~~~-- 390 (734)
....++++.+.. .+..+...+++|||++++++.+ ..++.++||.|+|++|+....+
T Consensus 22 ~~~~~lV~~g~G---------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~ 86 (127)
T cd04819 22 EAKGEPVDAGYG---------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPA 86 (127)
T ss_pred CeeEEEEEeCCC---------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcc
Confidence 356778876542 2223445679999999999764 6789999999999998766432
Q ss_pred --------ccCcCcceEEeeccchHHHHHHHhcCC
Q 044427 391 --------AFSYPLPATLISKENGQDILDYIRSTE 417 (734)
Q Consensus 391 --------~~~~~~p~~~i~~~~~~~l~~~~~~~~ 417 (734)
.....+|++.|+.+++..|.+.++.+.
T Consensus 87 ~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 87 TGDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 113469999999999999999998754
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.38 E-value=0.00043 Score=66.15 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred ccccccccCCC---CCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-------c--cCcCcceEEeeccc
Q 044427 343 ARFCAADALNS---YKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-------A--FSYPLPATLISKEN 405 (734)
Q Consensus 343 ~~~c~~~~~~~---~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-------~--~~~~~p~~~i~~~~ 405 (734)
.++|.+....+ ..+.|+|+|+.|+.| ..+++++||.++|++|+....+ . ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798766543 789999999999976 7899999999999999876432 1 24589999999999
Q ss_pred hHHHHHHHhcCCC
Q 044427 406 GQDILDYIRSTEY 418 (734)
Q Consensus 406 ~~~l~~~~~~~~~ 418 (734)
|..|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999887654
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.48 E-value=0.06 Score=47.46 Aligned_cols=80 Identities=26% Similarity=0.161 Sum_probs=61.3
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEcCceEEEeEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPV 696 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~ 696 (734)
..+.+++|+|.|..+..|++.........++++|..-.+ ++|++.++.|++.+... .+.+.+.|...-....+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--CceEEEEEEEEECCeEEEEEE
Confidence 567889999999999999987644234457778877667 68999999999996432 446889888876556788888
Q ss_pred EEE
Q 044427 697 VIY 699 (734)
Q Consensus 697 ~~~ 699 (734)
-+.
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.35 E-value=0.011 Score=55.25 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=54.8
Q ss_pred CCCCcCceEEEEeeCCc------------------chhhhccCceEEEEecCCcc--------Cc---ccCcCcceEEee
Q 044427 352 NSYKVEGKIVFCESLLD------------------GSDILAVNGLGTIMADSVFT--------DL---AFSYPLPATLIS 402 (734)
Q Consensus 352 ~~~~~~gkiv~~~~~~~------------------~~~~~~~Ga~g~i~~n~~~~--------~~---~~~~~~p~~~i~ 402 (734)
...+++||||++.++.+ ...+.++||+++|++|.... .+ .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999988776 58899999999999985421 11 123469999999
Q ss_pred ccchHHHHHHHhcCCCcEE
Q 044427 403 KENGQDILDYIRSTEYPIA 421 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~ 421 (734)
.+++..|...+..+..+..
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765443
No 68
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=95.41 E-value=0.25 Score=45.20 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=57.7
Q ss_pred ceeeeecCCCceEEEEEEEEEecCCCCeeEEEEeeC----CCce--------------------EEEEEcCeeEEeeCCc
Q 044427 605 SFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYM----PASV--------------------SVDVEPQSLSFSAVGE 660 (734)
Q Consensus 605 si~~~~~~~~~~~~~~~~tv~N~~~~~~ty~~~v~~----~~g~--------------------~v~v~p~~~~~~~~g~ 660 (734)
.|.+....+. ..+++++|+|.++++.+|.+.+.. ..|+ -+++ |..+++ ++++
T Consensus 18 YFdL~~~P~q--~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~ 93 (121)
T PF06030_consen 18 YFDLKVKPGQ--KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNE 93 (121)
T ss_pred eEEEEeCCCC--EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCC
Confidence 3555555555 788999999999999999997532 2221 1111 455888 6899
Q ss_pred EEEEEEEEEccccCCCCceEEEEEEE
Q 044427 661 QKSFTVKVTGPKIAQQPIMSGAIVWE 686 (734)
Q Consensus 661 ~~~~~vt~~~~~~~~~~~~~G~i~~~ 686 (734)
+++++++|+.+...-.+.+-|-|.|+
T Consensus 94 sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 94 SKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 99999999999877678888888876
No 69
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.99 E-value=0.094 Score=43.88 Aligned_cols=58 Identities=29% Similarity=0.320 Sum_probs=37.0
Q ss_pred EEEEEEEEEecCCCC-eeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccC
Q 044427 617 YGVFTRTVTNVGSPN-STYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIA 674 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 674 (734)
+.+++++|+|.++.+ ...++++..|.|-++...|.++.--++|++++++++|+++...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 678999999999765 3477888889998877788877533799999999999998653
No 70
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.59 E-value=0.37 Score=43.76 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=42.8
Q ss_pred ceEEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccC
Q 044427 615 PIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIA 674 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 674 (734)
.+.-.++++|+|.++.+.+|++++..++|+++......+++ ++|+++++.|.|.++...
T Consensus 30 ~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 30 SIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred eEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 35667899999999999999999999889998655588889 689999999999998754
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.20 E-value=0.14 Score=48.62 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=54.2
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCC-----------------------cchhhhccCc
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLL-----------------------DGSDILAVNG 377 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~-----------------------~~~~~~~~Ga 377 (734)
.+-++|+.+... ....|....+...+++|||||+.++. |..++...||
T Consensus 20 vtg~lVfvGyGi---------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYGI---------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA 90 (151)
T ss_pred ceEeEEEecCCc---------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC
Confidence 356777766432 13457766777889999999997763 3678899999
Q ss_pred eEEEEecCCccCcccCcCcc------eEEeeccchHHHHH
Q 044427 378 LGTIMADSVFTDLAFSYPLP------ATLISKENGQDILD 411 (734)
Q Consensus 378 ~g~i~~n~~~~~~~~~~~~p------~~~i~~~~~~~l~~ 411 (734)
+|+|++++..........+| ...++....+.+..
T Consensus 91 ~aVIv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 91 AAVIVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred eEEEEEeCCcccCcccccccccCccceEEechHHHHHHhh
Confidence 99999998765432222222 45565555555554
No 72
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=93.81 E-value=0.16 Score=49.64 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCCcCceEEEEeeCC-----cchhhhccCceEEEEecCCccC--------------------c-------c---------
Q 044427 353 SYKVEGKIVFCESLL-----DGSDILAVNGLGTIMADSVFTD--------------------L-------A--------- 391 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~-----~~~~~~~~Ga~g~i~~n~~~~~--------------------~-------~--------- 391 (734)
..+++|||+|+.++. |..+|+++||+|+|+|++.... + .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457999999999875 4789999999999999984210 0 0
Q ss_pred -cCcCcceEEeeccchHHHHHHHhc
Q 044427 392 -FSYPLPATLISKENGQDILDYIRS 415 (734)
Q Consensus 392 -~~~~~p~~~i~~~~~~~l~~~~~~ 415 (734)
.--.||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488899999999999987753
No 73
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.53 E-value=0.14 Score=47.79 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=44.7
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCC-----------------cchhhhccCceEEEEe
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLL-----------------DGSDILAVNGLGTIMA 383 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~-----------------~~~~~~~~Ga~g~i~~ 383 (734)
..-++++.+... ....|....+...+++|||||+.++. |...+.++||.|+|++
T Consensus 22 v~gelVfvGyG~---------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 22 VEAPLVFVGYGL---------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred ceEeEEEecCCc---------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 456777766432 13457777777889999999999765 3678899999999999
Q ss_pred cCCc
Q 044427 384 DSVF 387 (734)
Q Consensus 384 n~~~ 387 (734)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9864
No 74
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=92.71 E-value=0.2 Score=47.06 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=44.9
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCC-----------------------cchhhhccC
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLL-----------------------DGSDILAVN 376 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~-----------------------~~~~~~~~G 376 (734)
....|+++.+..- ....|....+...+++||||++.++. |...+.++|
T Consensus 19 ~~~aelVfvGyGi---------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYGI---------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHG 89 (142)
T ss_pred ccceeeEEecCCc---------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCC
Confidence 3467888876432 13458877888889999999997663 356788999
Q ss_pred ceEEEEecCCc
Q 044427 377 GLGTIMADSVF 387 (734)
Q Consensus 377 a~g~i~~n~~~ 387 (734)
|.|+|++++..
T Consensus 90 A~gvIii~~~~ 100 (142)
T cd04814 90 AAGVLIVHELA 100 (142)
T ss_pred CcEEEEEeCCC
Confidence 99999999865
No 75
>COG1470 Predicted membrane protein [Function unknown]
Probab=91.01 E-value=1.9 Score=47.62 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=63.7
Q ss_pred eeeeecCCCceEEEEEEEEEecCCCCee-EEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEE
Q 044427 606 FSLAIEDGQPIYGVFTRTVTNVGSPNST-YTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIV 684 (734)
Q Consensus 606 i~~~~~~~~~~~~~~~~tv~N~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~ 684 (734)
..+....|. ..+....+.|.|+.+.| -.+++..|.|-++.|+|.++---++|+++++.+|++++.....+-|+=+|.
T Consensus 389 ~~lt~taGe--e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~ 466 (513)
T COG1470 389 YRLTITAGE--EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITIT 466 (513)
T ss_pred EEEEecCCc--cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence 344444454 67888999999988765 778899999999999999876668999999999999998766666776666
Q ss_pred EEc
Q 044427 685 WED 687 (734)
Q Consensus 685 ~~~ 687 (734)
-+.
T Consensus 467 ~ks 469 (513)
T COG1470 467 AKS 469 (513)
T ss_pred Eee
Confidence 653
No 76
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=86.67 E-value=7 Score=35.48 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=47.7
Q ss_pred EEEEEEEEecCCCCeeEEEEeeC---CCc----eEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPYM---PAS----VSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE 686 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 686 (734)
.+.+++|+|.++.+..+.+.+.. ... -.+.++|..+.+ ++|+++.|+| +.....+.+....=+|.++
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 35688999999988888887764 111 257789999999 6899999999 7754444455555566665
No 77
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=86.20 E-value=2.1 Score=47.29 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc---------ccCcCcceEEeeccchHHHHHHHhcCCC
Q 044427 353 SYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL---------AFSYPLPATLISKENGQDILDYIRSTEY 418 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~---------~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 418 (734)
...+++|+++..|+.+ +..++++||.+.++.|+..+.+ ..+..||+++|+.+++..+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 3468899999999875 8899999999999999965322 2366899999999999999886665555
Q ss_pred cEEE
Q 044427 419 PIAT 422 (734)
Q Consensus 419 ~~~~ 422 (734)
.++.
T Consensus 171 V~~~ 174 (541)
T KOG2442|consen 171 VELA 174 (541)
T ss_pred EEEE
Confidence 4433
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=86.20 E-value=8.2 Score=42.79 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=52.6
Q ss_pred EEEEEEEEEecCCCCeeEEEEee-CCCceEEEEEcC-----eeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEc
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPY-MPASVSVDVEPQ-----SLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWED 687 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 687 (734)
+..+++++.|.+..+..|.+++. .|+|-...++-. +|.+ .+||+++|+|.|.++.....+.|.=.|+-..
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 67789999999999999999998 688877666543 4556 5899999999999987543444444444443
No 79
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=84.96 E-value=0.76 Score=43.32 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=29.8
Q ss_pred CCcCceEEEEeeC-----CcchhhhccCceEEEEecCCc
Q 044427 354 YKVEGKIVFCESL-----LDGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 354 ~~~~gkiv~~~~~-----~~~~~~~~~Ga~g~i~~n~~~ 387 (734)
-+++|||+|+..+ .|..+|+..||+|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 5799999999865 469999999999999999864
No 80
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=84.73 E-value=1.3 Score=44.82 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCcCceEEEEeeCC-----cchhhhccCceEEEEecCCc
Q 044427 353 SYKVEGKIVFCESLL-----DGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~-----~~~~~~~~Ga~g~i~~n~~~ 387 (734)
..+++|||||+.++. +..+|+.+||+|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 568999999998764 47889999999999999864
No 81
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=83.46 E-value=5.2 Score=44.88 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=49.3
Q ss_pred ceEEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccc
Q 044427 615 PIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPK 672 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 672 (734)
...-.+++.+.|.++.+.+|+++++..+|..+...++.+++ ++|++.++.|+|.++.
T Consensus 345 ~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 345 VVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred cEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 34677899999999999999999999999888875458888 6899999999998875
No 82
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=83.19 E-value=8.7 Score=35.82 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=53.3
Q ss_pred ceEEEEEEEEEecCCCC-eeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE
Q 044427 615 PIYGVFTRTVTNVGSPN-STYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE 686 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 686 (734)
++...+.+.+-|..+.. ..-++.......+++.-.|..+++ ++++.++++.++.+.+.. .++.||.|++.
T Consensus 68 q~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte-tGvIfG~I~Yd 138 (140)
T PF07718_consen 68 QYDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTE-TGVIFGNIVYD 138 (140)
T ss_pred eeeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEecc-CCEEEEEEEEe
Confidence 45677788888877653 223444444566777778999999 689999999999998866 78999999985
No 83
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=76.23 E-value=5.1 Score=37.61 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=59.0
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-------------ccCcCcceEEeecc
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-------------AFSYPLPATLISKE 404 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-------------~~~~~~p~~~i~~~ 404 (734)
..+|.... +.....+.+++++|++| ..++.++|+..+|+.++..... .+...+|+.++-..
T Consensus 74 p~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~ 152 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGV 152 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEecc
Confidence 45676432 23456789999999986 7889999999999988765321 34667999999988
Q ss_pred chHHHHHHHhcCCCcEEEEEe
Q 044427 405 NGQDILDYIRSTEYPIATIMF 425 (734)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~i~~ 425 (734)
+|..++..+..-.-.-+.|..
T Consensus 153 ~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 153 TGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred ceEEEehhHHHhCCccEEEec
Confidence 888777777665544444443
No 84
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.77 E-value=8.7 Score=41.40 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=56.7
Q ss_pred ccccccccC---CCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC-c------ccCcCcceEEeeccchH
Q 044427 343 ARFCAADAL---NSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD-L------AFSYPLPATLISKENGQ 407 (734)
Q Consensus 343 ~~~c~~~~~---~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~-~------~~~~~~p~~~i~~~~~~ 407 (734)
.++|.+... ........++++.|+.+ ..+|+.+|..++|+||+...+ + .....++..+++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 356765332 23455678899999875 889999999999999987643 2 45667899999999999
Q ss_pred HHHHHHhcCC
Q 044427 408 DILDYIRSTE 417 (734)
Q Consensus 408 ~l~~~~~~~~ 417 (734)
.++.|.....
T Consensus 142 ~l~~~~~~~~ 151 (348)
T KOG4628|consen 142 LLSSYAGRTE 151 (348)
T ss_pred HHHHhhcccc
Confidence 9999865443
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=74.86 E-value=25 Score=30.83 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=40.4
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccc
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPK 672 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 672 (734)
..+..++|+|.++....|.+....+.... |.|..-.+ .+|++.++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 46678899999999999999887777654 57998777 6899999999999854
No 86
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=72.26 E-value=11 Score=31.87 Aligned_cols=56 Identities=18% Similarity=0.055 Sum_probs=26.7
Q ss_pred EEEEEEEEecCCCCeeEEE--------EeeCCCc---------eEEEEEcCeeEEeeCCcEEEEEEEEEccccC
Q 044427 618 GVFTRTVTNVGSPNSTYTV--------RPYMPAS---------VSVDVEPQSLSFSAVGEQKSFTVKVTGPKIA 674 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~--------~v~~~~g---------~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 674 (734)
..++++|+|.++.+.+.+. .+....| --++-.-...++ ++||+++|+.+++.....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~~~ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKDLS 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS----
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCCCC
Confidence 3567788888877665554 2332233 222223345667 689999999988876643
No 87
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=62.30 E-value=8.7 Score=36.81 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=29.5
Q ss_pred cCCCCCcCceEEEEeeCC------------------------cchhhhccCceEEEEecCC
Q 044427 350 ALNSYKVEGKIVFCESLL------------------------DGSDILAVNGLGTIMADSV 386 (734)
Q Consensus 350 ~~~~~~~~gkiv~~~~~~------------------------~~~~~~~~Ga~g~i~~n~~ 386 (734)
.+...|++||||++.++. |...+.+.||.|+|+....
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 556778999999988543 3567889999999988764
No 88
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=60.49 E-value=56 Score=28.77 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=36.1
Q ss_pred EEEEEEEEEecCCCC-eeEEE-----EeeCCCceE---EEEEcCeeEEeeCCcEEEEEEEEEcccc
Q 044427 617 YGVFTRTVTNVGSPN-STYTV-----RPYMPASVS---VDVEPQSLSFSAVGEQKSFTVKVTGPKI 673 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~-~ty~~-----~v~~~~g~~---v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 673 (734)
..++.++++|.++.. .+-++ ++. -.|+. +......+++ ++|++.++++++.+...
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~-ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVE-YTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQY 79 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEE-CTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHSH
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEE-ECCcccccEeEEEcceee-CCCCEEEEEEEEEceeE
Confidence 678899999999877 44222 222 35653 4555667778 68999999999998764
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=59.23 E-value=34 Score=25.20 Aligned_cols=44 Identities=20% Similarity=0.106 Sum_probs=26.3
Q ss_pred EEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEE
Q 044427 622 RTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKV 668 (734)
Q Consensus 622 ~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~ 668 (734)
++++|.|+.+..-+-....-.=..+ +.++=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~--~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTA--EYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEe--eCCcceE-CCCCEEEEEEEC
Confidence 5789999886654332222222333 3333345 689999998874
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.63 E-value=1.1e+02 Score=25.95 Aligned_cols=51 Identities=35% Similarity=0.426 Sum_probs=31.8
Q ss_pred EEEEEEEEEecCCCC-eeEEEEeeCCCceEEEEEcCee-EEeeCCcEEEEEEEEEcc
Q 044427 617 YGVFTRTVTNVGSPN-STYTVRPYMPASVSVDVEPQSL-SFSAVGEQKSFTVKVTGP 671 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~-~ty~~~v~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~ 671 (734)
..+++++|+|.|... ..+.+.+.. .|..+ .-..+ .+ ++|+++++++++.+.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYL-DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEE-TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEE-CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 688899999999875 456666543 33333 22223 45 589999998888887
No 91
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=49.62 E-value=53 Score=27.39 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=30.5
Q ss_pred EEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEcCc
Q 044427 645 SVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGV 689 (734)
Q Consensus 645 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~ 689 (734)
.+++.|..+++ ..|++..|+++++..... - ...+.|+...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~---~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAK---V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCC---c-cceEEEEECC
Confidence 57789999999 589999999997655432 2 6788898644
No 92
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=44.67 E-value=58 Score=28.52 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred EEEEEEEEecCCCCeeEEEEee-------------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPY-------------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~-------------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.---.+.. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 5678999999998643222111 1225555441 235677 68988888754
No 93
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=43.98 E-value=3.1e+02 Score=29.96 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=35.4
Q ss_pred EEEEEEEEEecCCCCeeE---EE-Eee------------------CCCceEEEEEcCeeEEeeCCcEEEEEEEEEccc--
Q 044427 617 YGVFTRTVTNVGSPNSTY---TV-RPY------------------MPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPK-- 672 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty---~~-~v~------------------~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~-- 672 (734)
+.+++++|||.|+++... +. .+. +..| ++|+|++ -+ ++||+++++|+++--.
T Consensus 264 ~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~dA~We 339 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQDAAWE 339 (381)
T ss_dssp EEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-HHHH
T ss_pred EEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeehhHHH
Confidence 789999999999987542 21 111 0124 3445554 34 6899999999884321
Q ss_pred --------cCCCCceEEEEEEEc
Q 044427 673 --------IAQQPIMSGAIVWED 687 (734)
Q Consensus 673 --------~~~~~~~~G~i~~~~ 687 (734)
...+...-|-|-|.|
T Consensus 340 veRL~~l~~D~dsrfgGLLff~d 362 (381)
T PF04744_consen 340 VERLSDLIYDPDSRFGGLLFFFD 362 (381)
T ss_dssp HTTGGGGGGSSS-EEEEEEEEEE
T ss_pred HhhhhhhhcCcccceeEEEEEEc
Confidence 123445556666665
No 94
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=43.54 E-value=1.2e+02 Score=25.83 Aligned_cols=54 Identities=26% Similarity=0.270 Sum_probs=35.3
Q ss_pred EEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMS 680 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~ 680 (734)
..+.++|+|.|....++++.-..-. .-.|.++++ ++|++++....+. ...+||.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~----~s~gwYD 73 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLA----ASGGWYD 73 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeec----CCCCcEE
Confidence 4688999999998888888652211 113566677 5788877766552 2255665
No 95
>PRK13203 ureB urease subunit beta; Reviewed
Probab=43.28 E-value=58 Score=28.57 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=29.3
Q ss_pred EEEEEEEEecCCCCeeEEEEee-------------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPY-------------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~-------------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.---.+.. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 20 ~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 5678999999998643222111 1124444441 235677 68999988753
No 96
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=42.56 E-value=64 Score=28.27 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=29.3
Q ss_pred EEEEEEEEecCCCCeeEEEEee-------------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPY-------------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~-------------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.---.+.. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 5678999999998643222111 1224444441 235677 68999888754
No 97
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=40.49 E-value=70 Score=38.94 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=35.3
Q ss_pred EEEEEEEEEecCCCCeeEEEE--eeCCCceEEEEEc-------CeeEEeeCCcEEEEEEEEEcccc
Q 044427 617 YGVFTRTVTNVGSPNSTYTVR--PYMPASVSVDVEP-------QSLSFSAVGEQKSFTVKVTGPKI 673 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~--v~~~~g~~v~v~p-------~~~~~~~~g~~~~~~vt~~~~~~ 673 (734)
..+++++|||+|+.+..-.+. +..|.+- +. .| +++.+ ++||+++++++++....
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~L 730 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEAL 730 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHHh
Confidence 578999999999865443333 2223221 11 22 34566 68999999999998763
No 98
>PRK13202 ureB urease subunit beta; Reviewed
Probab=39.80 E-value=62 Score=28.48 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=29.1
Q ss_pred EEEEEEEEecCCCCeeEEEEee-------------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPY-------------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~-------------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.---.+.. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 4678999999998643222111 1124444441 235677 68988888754
No 99
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=39.73 E-value=3e+02 Score=25.15 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=43.9
Q ss_pred EEEEEEEEEecCCCCeeEEEE----e--eCCCce----EEEE---EcCeeEEeeCCcEEEEEEEEEccccCCC--CceEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVR----P--YMPASV----SVDV---EPQSLSFSAVGEQKSFTVKVTGPKIAQQ--PIMSG 681 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~----v--~~~~g~----~v~v---~p~~~~~~~~g~~~~~~vt~~~~~~~~~--~~~~G 681 (734)
...+.+++||.|+.+ .++. | ....|. .+.- .+..+++ ++|++..+.|+......... ....-
T Consensus 19 ~~~~~l~~tN~s~~~--C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~~ 95 (131)
T PF14016_consen 19 QRHATLTFTNTSDTP--CTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTPA 95 (131)
T ss_pred ccEEEEEEEECCCCc--EEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCccccC
Confidence 457889999999763 3332 1 112222 1111 2556888 68999999999988654323 22222
Q ss_pred EEEEE--cCceEEEeEE
Q 044427 682 AIVWE--DGVHQVRSPV 696 (734)
Q Consensus 682 ~i~~~--~~~~~v~~P~ 696 (734)
.|..+ ++...+++|+
T Consensus 96 ~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 96 GLTVTPPGGTAPVTVPW 112 (131)
T ss_pred EEEEECCCCCccEEEeC
Confidence 34444 3445556655
No 100
>PLN03080 Probable beta-xylosidase; Provisional
Probab=39.65 E-value=56 Score=39.80 Aligned_cols=53 Identities=19% Similarity=0.082 Sum_probs=33.3
Q ss_pred EEEEEEEEEecCCCCeeEEEEe--eCCCc-e----EEEEEcCeeEEeeCCcEEEEEEEEEc
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRP--YMPAS-V----SVDVEPQSLSFSAVGEQKSFTVKVTG 670 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v--~~~~g-~----~v~v~p~~~~~~~~g~~~~~~vt~~~ 670 (734)
..+++++|||+|+.+..-.+.+ ..|.+ + +--+--+++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4778999999998765444432 22221 1 11111235566 68999999999987
No 101
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=37.30 E-value=68 Score=28.06 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=26.2
Q ss_pred EEEEEEEEEecCCCCeeEEEEee---C----------CCceEEEEEcC--eeEEeeCCcEEEEEEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPY---M----------PASVSVDVEPQ--SLSFSAVGEQKSFTVK 667 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~---~----------~~g~~v~v~p~--~~~~~~~g~~~~~~vt 667 (734)
..+.+++|+|.|+.+.---.+.. . .-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 r~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEEE
Confidence 36788999999998643222111 0 12555554 32 5677 68988888753
No 102
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=35.82 E-value=1.6e+02 Score=22.52 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=24.1
Q ss_pred EEEEEEEEEecCCCCee-EEEEeeCCCceEEEEEcCeeEE
Q 044427 617 YGVFTRTVTNVGSPNST-YTVRPYMPASVSVDVEPQSLSF 655 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~ 655 (734)
..+++++++|.|..+.+ ..+.-.-|+|+.. .|.++++
T Consensus 13 ~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 13 TITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred EEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 68899999999987654 3333334666543 4565554
No 103
>PRK13205 ureB urease subunit beta; Reviewed
Probab=35.38 E-value=83 Score=29.59 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=29.8
Q ss_pred EEEEEEEEecCCCCee----EEEE-ee--------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNST----YTVR-PY--------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~t----y~~~-v~--------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.- |.+- +. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 20 ~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 5678999999998643 3221 11 0125555441 235678 68999988764
No 104
>PRK13201 ureB urease subunit beta; Reviewed
Probab=34.98 E-value=88 Score=28.80 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCCCeeEEEEee-------------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPY-------------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~-------------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.---.+.. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 5678999999998643222111 1125555441 235678 68999988754
No 105
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.70 E-value=44 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 044427 503 AAYVKAAHPNWSPSSIKSALMTTA 526 (734)
Q Consensus 503 aALl~q~~P~ls~~~vk~~L~~TA 526 (734)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999996653
No 106
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=31.70 E-value=2.8e+02 Score=24.75 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred CCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCH-HHHHHHHHHhC-CcEEEE
Q 044427 197 PNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDP-IAIGSFHAMKY-GILTSN 265 (734)
Q Consensus 197 P~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~-~~~a~~~a~~~-Gi~vV~ 265 (734)
++++|+.+ +.++||....++.-++++.+.|+|+|-+|-......+...=| ++.......++ |+-||-
T Consensus 36 ~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred CCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 46777664 556788899999999999999999999987655322110101 22222233344 887774
No 107
>PRK13204 ureB urease subunit beta; Reviewed
Probab=31.60 E-value=1e+02 Score=29.09 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=29.7
Q ss_pred EEEEEEEEEecCCCCeeEEEEee-------------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPY-------------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~-------------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
..+.+++|+|.|+.+.---.+.. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 42 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 42 RPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeeEEEEE
Confidence 35678999999998643222111 1124444441 235677 68988888754
No 108
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=30.67 E-value=2.2e+02 Score=29.27 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=37.4
Q ss_pred EEEEEEEecCCCCeeEEEEeeC---C---C----------ceEEEEEcCeeEEeeCCcEEEEEEEEEcc
Q 044427 619 VFTRTVTNVGSPNSTYTVRPYM---P---A----------SVSVDVEPQSLSFSAVGEQKSFTVKVTGP 671 (734)
Q Consensus 619 ~~~~tv~N~~~~~~ty~~~v~~---~---~----------g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 671 (734)
...++|.|.|+.+..+++.+.. | . --.+-++|..|++ ++|+++.|+|.-...
T Consensus 34 ~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~ 101 (234)
T PRK15308 34 ATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA 101 (234)
T ss_pred eEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC
Confidence 3578899999998888876432 1 1 1157789999999 588888888665443
No 109
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=28.32 E-value=3.9e+02 Score=34.44 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=50.4
Q ss_pred eeecCCCceEEEEEEEEEecCCCCeeEE-EEee-C----------CCce----------------EEEEEcCeeEEeeCC
Q 044427 608 LAIEDGQPIYGVFTRTVTNVGSPNSTYT-VRPY-M----------PASV----------------SVDVEPQSLSFSAVG 659 (734)
Q Consensus 608 ~~~~~~~~~~~~~~~tv~N~~~~~~ty~-~~v~-~----------~~g~----------------~v~v~p~~~~~~~~g 659 (734)
+-.++|. ..++++||+|.|..+..|- ++.. . ...+ .+.+.... .+ ++|
T Consensus 793 ~mlleGE--~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~-~I-~Pg 868 (1185)
T PF08626_consen 793 LMLLEGE--KQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKP-PI-PPG 868 (1185)
T ss_pred eEEECCc--EEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccC-cc-CCC
Confidence 4445565 7889999999998776543 2221 0 0000 01110111 45 689
Q ss_pred cEEEEEEEEEccccCCCCceEEEEEEE------cC----ceEEEeEEEEEecC
Q 044427 660 EQKSFTVKVTGPKIAQQPIMSGAIVWE------DG----VHQVRSPVVIYNIL 702 (734)
Q Consensus 660 ~~~~~~vt~~~~~~~~~~~~~G~i~~~------~~----~~~v~~P~~~~~~~ 702 (734)
++.+|++.++..... -+.-...+++. +. ...+++|+.+..-.
T Consensus 869 ~~~~~~~~~~~~~~~-~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~ 920 (1185)
T PF08626_consen 869 ESATFTVEVDGKPGP-IQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNP 920 (1185)
T ss_pred CEEEEEEEecCcccc-cceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEec
Confidence 999999998765431 12333334332 11 35889999988653
No 110
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=28.19 E-value=26 Score=16.14 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.0
Q ss_pred eccCCC
Q 044427 439 SFSSRG 444 (734)
Q Consensus 439 ~fSS~G 444 (734)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 111
>PRK13198 ureB urease subunit beta; Reviewed
Probab=27.87 E-value=1.3e+02 Score=28.41 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=29.3
Q ss_pred EEEEEEEEecCCCCee----EEEE-ee--------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNST----YTVR-PY--------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~t----y~~~-v~--------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
.+.+++|+|.|+.+.- |.+- +. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 48 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRF-EPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEee-CCCCeeEEEEE
Confidence 5678999999998643 2221 11 1225444441 235677 68988888754
No 112
>PRK15019 CsdA-binding activator; Provisional
Probab=26.25 E-value=60 Score=30.77 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=27.8
Q ss_pred EEeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 044427 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKS 520 (734)
Q Consensus 487 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~ 520 (734)
..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4444555 67999999999999999999999876
No 113
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.59 E-value=55 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHH
Q 044427 494 MSCPHASGSAAYV 506 (734)
Q Consensus 494 mAaP~VAG~aALl 506 (734)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 114
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.37 E-value=5.4e+02 Score=23.89 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=36.3
Q ss_pred EEEEEEEEEecCCCCeeE---EEEeeCCCc---eEEEEEc------C---eeEEeeCCcEEEEEEEEEcccc
Q 044427 617 YGVFTRTVTNVGSPNSTY---TVRPYMPAS---VSVDVEP------Q---SLSFSAVGEQKSFTVKVTGPKI 673 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty---~~~v~~~~g---~~v~v~p------~---~~~~~~~g~~~~~~vt~~~~~~ 673 (734)
..+++-+++|.++.+..| +++..-..| .+..++| . .-.+ ++|++..|++++..+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l-~pg~~~~~~~~~~~p~~ 139 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGL-PPGESVPFRLRLEDPPP 139 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhccccccccccc-CCCCeEEEEEEeeCCCC
Confidence 677888999999887654 333333334 2344555 1 2345 58999999999886554
No 115
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.98 E-value=66 Score=30.14 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=28.8
Q ss_pred eEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 044427 486 FNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSA 521 (734)
Q Consensus 486 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~ 521 (734)
-..+.|.| =|++|-|.+|||++.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998743
No 116
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=24.83 E-value=2.2e+02 Score=24.95 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=27.6
Q ss_pred EEEEEEEEecCCCCee----EEEE-ee--------CCCceEEEEE-cCeeEEeeCCcEEEEEE
Q 044427 618 GVFTRTVTNVGSPNST----YTVR-PY--------MPASVSVDVE-PQSLSFSAVGEQKSFTV 666 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~t----y~~~-v~--------~~~g~~v~v~-p~~~~~~~~g~~~~~~v 666 (734)
.+.+++|.|+|+.+.- |.+- +. ..-|..+.+. -..+.| ++|+.+++++
T Consensus 20 ~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRF-EPG~~k~V~L 81 (106)
T COG0832 20 PTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRF-EPGDEKEVEL 81 (106)
T ss_pred cceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEee-CCCCccEEEE
Confidence 4567789999998643 3321 11 1225444442 224667 5788888764
No 117
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.92 E-value=2.4e+02 Score=30.16 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=50.0
Q ss_pred cCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCC----CcEEEEccCCCCCCCCCC-CHHHHHHHHHHhCCcEEEEcCCCC
Q 044427 196 VPNARISMYKVCWSDGCATADILAAFDDAIADG----VDIISVSLGSDFPFEYFE-DPIAIGSFHAMKYGILTSNSAGNS 270 (734)
Q Consensus 196 AP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g----~dVINlSlG~~~~~~~~~-~~~~~a~~~a~~~Gi~vV~AAGN~ 270 (734)
.|.+++..|.+.--+.....+|++||+.+-+.+ +|||-+-=|+.+-.+.+. +... .+....+.-+.|+.+-|-+
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~-varai~~~~~PvisaIGHe 117 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEE-VARAIAASPIPVISAIGHE 117 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHH-HHHHHHhCCCCEEEecCCC
Confidence 466677666553322367788999999998765 999999999885222221 2222 1223346779999999987
Q ss_pred CC
Q 044427 271 GP 272 (734)
Q Consensus 271 G~ 272 (734)
-+
T Consensus 118 ~D 119 (319)
T PF02601_consen 118 TD 119 (319)
T ss_pred CC
Confidence 53
No 118
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=22.68 E-value=2.2e+02 Score=30.96 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=31.8
Q ss_pred EEEEEEEEEecCCCCee---EE-EEeeC-------------CC-----ceEEEEEcCeeEEeeCCcEEEEEEEEEc
Q 044427 617 YGVFTRTVTNVGSPNST---YT-VRPYM-------------PA-----SVSVDVEPQSLSFSAVGEQKSFTVKVTG 670 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~t---y~-~~v~~-------------~~-----g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 670 (734)
+.+++.+|||.|+++.. |+ +.+.- |+ |++| ++++ -+ ++||++++.|++.-
T Consensus 283 ~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v--~d~~-pI-~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEV--DDQS-AI-APGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhcccee--CCCC-Cc-CCCcceEEEEEEeh
Confidence 78899999999998643 22 22211 22 4444 3333 23 68999999988764
No 119
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.54 E-value=2e+02 Score=23.37 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=18.8
Q ss_pred EEEEEEEEEecCCCCee-EEEEeeCCCceE
Q 044427 617 YGVFTRTVTNVGSPNST-YTVRPYMPASVS 645 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~t-y~~~v~~~~g~~ 645 (734)
..+++++|+|.|+.... ..+.-.-|.|+.
T Consensus 42 ~v~ytitvtN~G~~~a~nv~v~D~lp~g~~ 71 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATNVVVTDTLPAGLT 71 (76)
T ss_pred EEEEEEEEEECCCCeeEeEEEEEcCCCCCE
Confidence 68899999999987533 333333355544
No 120
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.19 E-value=71 Score=24.72 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=24.2
Q ss_pred cceEEeccccchhhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 044427 484 VSFNIISGTSMSCPHASGSAA------YVKAAHPNWSPSSIKSALM 523 (734)
Q Consensus 484 ~~y~~~sGTSmAaP~VAG~aA------Ll~q~~P~ls~~~vk~~L~ 523 (734)
++--.+.||=+..=.|....+ -+.+.||.|+.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 344566777776665555432 3456799999999999984
No 121
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=22.07 E-value=5.2e+02 Score=22.38 Aligned_cols=30 Identities=30% Similarity=0.216 Sum_probs=23.4
Q ss_pred EEEEEEEEecCCCCe-eEEEEeeCCCceEEE
Q 044427 618 GVFTRTVTNVGSPNS-TYTVRPYMPASVSVD 647 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~-ty~~~v~~~~g~~v~ 647 (734)
.+..++|+|.++.+. .|++++..+.+.++.
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 556899999998874 699998888776654
No 122
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=21.69 E-value=83 Score=29.47 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=27.8
Q ss_pred EEeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 044427 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKS 520 (734)
Q Consensus 487 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~ 520 (734)
..+.|.| =|++|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445666 68999999999999999999999875
No 123
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=21.36 E-value=5e+02 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=17.5
Q ss_pred CceEEEEEcCeeEEeeCC-cEEEEEEEEEccc
Q 044427 642 ASVSVDVEPQSLSFSAVG-EQKSFTVKVTGPK 672 (734)
Q Consensus 642 ~g~~v~v~p~~~~~~~~g-~~~~~~vt~~~~~ 672 (734)
+|....-...+|+|. +| .+|+|+|.+.-..
T Consensus 47 ~g~Dy~~~~g~l~F~-~ge~~k~i~i~i~dD~ 77 (90)
T smart00237 47 AGSDYEPVEGTLTFP-PGETEKCIRIKIIDDD 77 (90)
T ss_pred CCCCccccceEEEEC-CCCEEEEEEEEEeCCC
Confidence 455555456778885 45 4466666655444
No 124
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=21.17 E-value=3.8e+02 Score=28.54 Aligned_cols=20 Identities=35% Similarity=0.152 Sum_probs=12.2
Q ss_pred EEEEEEEEEecCCCCeeEEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTV 636 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~ 636 (734)
...+++||+|..+.+.+-.+
T Consensus 243 ~~~~~itv~N~~~~~v~v~v 262 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTV 262 (317)
T ss_pred EEEEEEEEECCCCCCEEEEE
Confidence 55666777777665555443
No 125
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.93 E-value=1.3e+02 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 044427 502 SAAYVKAAHPNWSPSSIKSALMTTA 526 (734)
Q Consensus 502 ~aALl~q~~P~ls~~~vk~~L~~TA 526 (734)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998643
No 126
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=20.88 E-value=7.5e+02 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCceEEEEEcCeeEEeeCCcE-EEEEEEEEccc
Q 044427 641 PASVSVDVEPQSLSFSAVGEQ-KSFTVKVTGPK 672 (734)
Q Consensus 641 ~~g~~v~v~p~~~~~~~~g~~-~~~~vt~~~~~ 672 (734)
.+|........+|+|. +||+ |+++|++--+.
T Consensus 445 ~AG~DY~~~sGTLtF~-PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 445 NAGSDYEFTEGTLVFK-PGETQKEFRIGIIDDD 476 (928)
T ss_pred CCCCCccccCceEEEC-CCceEEEEEEEEccCC
Confidence 4566666677899995 6755 77777776554
No 127
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.65 E-value=94 Score=28.53 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=26.2
Q ss_pred EeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 044427 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSA 521 (734)
Q Consensus 488 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~ 521 (734)
.+.|.|= |+.|-|++||+++.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998764
No 128
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=85 Score=29.53 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=25.9
Q ss_pred EEeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 044427 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKS 520 (734)
Q Consensus 487 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~ 520 (734)
..+.|=|= |++|.|.+|++++.+-..+|++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 34444443 6899999999999999999998753
No 129
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=20.15 E-value=1.8e+02 Score=28.90 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=29.5
Q ss_pred EEEEEEEEEecCCCCee----EEEE-ee--------CCCceEEEEE-cCeeEEeeCCcEEEEEEE
Q 044427 617 YGVFTRTVTNVGSPNST----YTVR-PY--------MPASVSVDVE-PQSLSFSAVGEQKSFTVK 667 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~t----y~~~-v~--------~~~g~~v~v~-p~~~~~~~~g~~~~~~vt 667 (734)
..+.+++|+|.|+.+.- |.+- +. ..-|..+.+- -..+.| ++|+++++++.
T Consensus 128 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRF-EPG~~k~V~LV 191 (208)
T PRK13192 128 RPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRF-EPGETKEVRLV 191 (208)
T ss_pred CCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeE-CCCCeeEEEEE
Confidence 35678999999998643 3221 11 0124444441 235677 68988888753
Done!