Query 044429
Match_columns 295
No_of_seqs 122 out of 317
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pnv_A Small conductance calci 56.5 19 0.00063 23.7 4.4 29 252-280 11-39 (43)
2 2w6b_A RHO guanine nucleotide 55.8 45 0.0015 22.9 6.4 43 105-153 10-52 (56)
3 3dyt_A Sorting nexin-9; 3-heli 54.5 86 0.0029 29.0 10.5 64 45-120 228-291 (366)
4 2ket_A Cathelicidin-6; antimic 45.1 16 0.00056 21.0 2.4 15 137-151 3-17 (27)
5 3ljm_A Coil Ser L9C; de novo d 44.9 31 0.0011 20.4 3.6 17 258-274 9-25 (31)
6 4akv_A Sorting nexin-33; trans 44.1 1.8E+02 0.0063 27.0 11.1 65 45-121 248-312 (386)
7 1mof_A Moloney murine leukemia 35.3 54 0.0018 22.6 4.2 30 258-287 3-32 (55)
8 2akf_A Coronin-1A; coiled coil 32.6 36 0.0012 20.5 2.6 16 252-267 15-30 (32)
9 3vlc_E Golgi to ER traffic pro 29.3 81 0.0028 24.0 4.8 57 82-150 15-71 (94)
10 3c3f_A Alpha/beta peptide with 27.4 1E+02 0.0036 19.0 4.1 21 256-276 7-27 (34)
11 3onj_A T-snare VTI1; helix, HA 24.6 1.3E+02 0.0045 22.5 5.3 45 103-152 46-93 (97)
12 1zzp_A P150, C-ABL, proto-onco 24.2 1E+02 0.0034 24.6 4.6 55 88-142 53-120 (130)
13 3onj_A T-snare VTI1; helix, HA 23.8 1.3E+02 0.0044 22.5 5.1 34 252-285 36-74 (97)
14 1y4m_A HERV-FRD_6P24.1 proviru 23.6 40 0.0014 23.1 1.9 28 260-287 3-30 (53)
15 3kyj_A CHEA3, putative histidi 23.3 82 0.0028 25.3 4.2 28 253-280 18-51 (144)
16 2lw1_A ABC transporter ATP-bin 23.3 1.4E+02 0.005 21.7 5.3 24 249-272 55-78 (89)
17 3tj6_B Protein PS 120; cytoske 23.1 1E+02 0.0036 17.4 3.2 18 98-115 2-19 (23)
18 3n06_A Prolactin, PRL; PH depe 22.8 84 0.0029 26.5 4.3 28 254-281 98-125 (186)
19 4e61_A Protein BIM1; EB1-like 22.3 1.6E+02 0.0056 22.8 5.4 34 250-283 18-51 (106)
20 1fio_A SSO1 protein; four heli 22.2 3.2E+02 0.011 22.2 8.6 67 91-157 2-74 (196)
21 1kd8_A GABH AIV, GCN4 acid bas 22.1 1E+02 0.0034 19.3 3.3 23 255-277 6-28 (36)
22 3nvo_A Zinc transport protein 21.8 2.3E+02 0.0079 24.1 7.1 35 83-117 226-260 (264)
23 2lw1_A ABC transporter ATP-bin 21.2 81 0.0028 23.2 3.4 16 258-273 30-45 (89)
24 2gtv_X CM, chorismate mutase; 20.9 1.5E+02 0.0051 22.7 5.0 36 248-283 54-89 (104)
25 2zqm_A Prefoldin beta subunit 20.3 2.7E+02 0.0093 20.7 6.5 40 252-291 72-111 (117)
26 2yy0_A C-MYC-binding protein; 20.2 1.5E+02 0.0051 19.9 4.3 29 252-280 21-49 (53)
27 1s94_A S-syntaxin; three helix 20.2 3.5E+02 0.012 21.9 8.4 63 96-158 41-107 (180)
No 1
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=56.48 E-value=19 Score=23.66 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhhHHHHhhhHHHHHHHH
Q 044429 252 MQHVQTSLKELEGSIEGLEKNLENLFRRL 280 (295)
Q Consensus 252 ~~~~~~~le~LE~~I~~lE~gle~lFR~L 280 (295)
+.+++.+-++||..|..||..++.|-+.+
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788899999999999998876544
No 2
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=55.78 E-value=45 Score=22.93 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchhhhHHHHHHHHhhhHHHHHHHH
Q 044429 105 DSMLQIKERVQGLHSMARRRKGDSSIENTVASYTCFRKKMNKDAKKFIA 153 (295)
Q Consensus 105 d~ll~lKe~v~eLqsalRRr~g~~~~~~~v~~y~~~rKk~kK~i~k~l~ 153 (295)
|..=++|..|++||--.++-. ..+..=-++||++.+-+.|.+.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~------k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMK------KSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666655444432 2333445669988888888754
No 3
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=54.53 E-value=86 Score=28.95 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=45.3
Q ss_pred hHHHHhHHhhhHHHHHhHHHHHcCchhHHHHhhhhhhhHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 044429 45 AESICKSLSGLEDLYICIDDLLNMASTQQVLSQNQNQHQKCIDELLDVSVKLLDICGITRDSMLQIKERVQGLHSM 120 (295)
Q Consensus 45 s~~i~~~L~~L~~l~~~~~~Ll~lP~~q~aL~~~~~~~~k~vee~LD~sl~LLD~C~~~rd~ll~lKe~v~eLqsa 120 (295)
...+..+|..+++.|+.+.++..- |. +.+...+.|.-=..++++++++|+|-.-+..++..+.+
T Consensus 228 ~~~L~~al~~l~~~~~~i~~l~~~---qa---------~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~ 291 (366)
T 3dyt_A 228 ETDLNDAITEAGKTYEEIASLVAE---QP---------KKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKES 291 (366)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHH---SG---------GGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---HH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999888732 21 33455666666667888888999887777666655554
No 4
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=45.08 E-value=16 Score=20.97 Aligned_cols=15 Identities=47% Similarity=0.640 Sum_probs=11.9
Q ss_pred HHHHHHhhhHHHHHH
Q 044429 137 YTCFRKKMNKDAKKF 151 (295)
Q Consensus 137 y~~~rKk~kK~i~k~ 151 (295)
|-|+|||.||-++|+
T Consensus 3 fkrfrkkfkklfkkl 17 (27)
T 2ket_A 3 FKRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 668899888887765
No 5
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=44.85 E-value=31 Score=20.42 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=6.9
Q ss_pred HHHHHHhhHHHHhhhHH
Q 044429 258 SLKELEGSIEGLEKNLE 274 (295)
Q Consensus 258 ~le~LE~~I~~lE~gle 274 (295)
+..+||.-++.||..+|
T Consensus 9 kcaalesklqalekkle 25 (31)
T 3ljm_A 9 KCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 6
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=44.10 E-value=1.8e+02 Score=27.00 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=46.4
Q ss_pred hHHHHhHHhhhHHHHHhHHHHHcCchhHHHHhhhhhhhHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 044429 45 AESICKSLSGLEDLYICIDDLLNMASTQQVLSQNQNQHQKCIDELLDVSVKLLDICGITRDSMLQIKERVQGLHSMA 121 (295)
Q Consensus 45 s~~i~~~L~~L~~l~~~~~~Ll~lP~~q~aL~~~~~~~~k~vee~LD~sl~LLD~C~~~rd~ll~lKe~v~eLqsal 121 (295)
...+..+|+.++++|+.+.++..- |. ......+.|..=..++++++++|.|-.-+..++..+.+-
T Consensus 248 ~~~Ls~aL~~l~~~~e~i~~l~~~---Qa---------~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~ 312 (386)
T 4akv_A 248 SEALNSAISHTGRTYEAIGEMFAE---QP---------KNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQ 312 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---GG---------GTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888887722 21 344556666666678888999999888887776666653
No 7
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=35.28 E-value=54 Score=22.59 Aligned_cols=30 Identities=40% Similarity=0.591 Sum_probs=26.2
Q ss_pred HHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Q 044429 258 SLKELEGSIEGLEKNLENLFRRLIRTRASL 287 (295)
Q Consensus 258 ~le~LE~~I~~lE~gle~lFR~LI~tRVSL 287 (295)
-+++++.+|..|+..+..+--..+|+|-+|
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999885
No 8
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.57 E-value=36 Score=20.45 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhhHH
Q 044429 252 MQHVQTSLKELEGSIE 267 (295)
Q Consensus 252 ~~~~~~~le~LE~~I~ 267 (295)
+|.+|+++..||..++
T Consensus 15 vq~lq~r~drle~tvq 30 (32)
T 2akf_A 15 VQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5788888888887765
No 9
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=29.31 E-value=81 Score=24.04 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=27.2
Q ss_pred hHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCCCccchhhhHHHHHHHHhhhHHHHH
Q 044429 82 HQKCIDELLDVSVKLLDICGITRDSMLQIKERVQGLHSMARRRKGDSSIENTVASYTCFRKKMNKDAKK 150 (295)
Q Consensus 82 ~~k~vee~LD~sl~LLD~C~~~rd~ll~lKe~v~eLqsalRRr~g~~~~~~~v~~y~~~rKk~kK~i~k 150 (295)
|+||++.+.-.| ..-....+++..+.+|.. -.+..+.+.+-++|.+.|++..|-...
T Consensus 15 ~~~~~~~v~p~s--------~~~~~~~~lk~E~~~lk~----E~~stSaQDEFAKWAKL~Rk~DKl~~e 71 (94)
T 3vlc_E 15 HEKWISKFAPGN--------ELSKKYLAKVKERHELKE----FNNSISAQDNYAKWTKNNRKLDSLDKE 71 (94)
T ss_dssp -----------C--------CTTHHHHHHHHHHHHHHH----HHTTSCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccc--------HhHHHHHHHHHHHHHHHH----HHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 478888877662 222334445555554432 225667788999999999977665443
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.43 E-value=1e+02 Score=19.01 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHHHHHhhHHHHhhhHHHH
Q 044429 256 QTSLKELEGSIEGLEKNLENL 276 (295)
Q Consensus 256 ~~~le~LE~~I~~lE~gle~l 276 (295)
-.+.|+|=.+-.+||.+++.|
T Consensus 7 EdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHH
Confidence 345666666777777777775
No 11
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.57 E-value=1.3e+02 Score=22.46 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHH--HHHHhccCCCccchhhhHHHHHHHHh-hhHHHHHHH
Q 044429 103 TRDSMLQIKERVQGL--HSMARRRKGDSSIENTVASYTCFRKK-MNKDAKKFI 152 (295)
Q Consensus 103 ~rd~ll~lKe~v~eL--qsalRRr~g~~~~~~~v~~y~~~rKk-~kK~i~k~l 152 (295)
+.|.|-+|.-.++.+ ....|.. +.++++.|-.--.+ +|++++++.
T Consensus 46 A~ell~qMelE~~~~~~p~~~R~~-----~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 46 LFDLLDQMDVEVNNSIGDASERAT-----YKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888888888 6667654 56788888888888 888887763
No 12
>1zzp_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; four helix bundle, nuclear export signal, transferase; NMR {Homo sapiens}
Probab=24.16 E-value=1e+02 Score=24.64 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=36.1
Q ss_pred HhhhhhHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHhccCCCccchhhhHHHHHHHH
Q 044429 88 ELLDVSVKLLDICGI-------------TRDSMLQIKERVQGLHSMARRRKGDSSIENTVASYTCFRK 142 (295)
Q Consensus 88 e~LD~sl~LLD~C~~-------------~rd~ll~lKe~v~eLqsalRRr~g~~~~~~~v~~y~~~rK 142 (295)
.+||.-=.|+|-|.. |||++..+....+|||..=...+|.++-.....+.+.+-|
T Consensus 53 ~~ld~g~~L~~yC~~yvd~i~Q~RnkfafreAv~klE~sl~elq~~~a~~gg~p~a~~~~s~LlssVk 120 (130)
T 1zzp_A 53 AVLEAGKNLYSFCVSYVDSIQQMRNKFAFREAINKLENNLRELQICPATAGSGPAATQDFSKLLSSVK 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHHHHHSCCSSSSCSSSCCCCCCHHHHHHHH
T ss_pred HHHHhHHHHHHhccccccchHHHhhhHHHHHHHHHhhcCHHHHhcCccccCCCCCCcHHHHHHHHHHH
Confidence 445666678888876 8999999999999998764444333343333444444444
No 13
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.78 E-value=1.3e+02 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhhHHHHhhhHHHH-----HHHHHHHHH
Q 044429 252 MQHVQTSLKELEGSIEGLEKNLENL-----FRRLIRTRA 285 (295)
Q Consensus 252 ~~~~~~~le~LE~~I~~lE~gle~l-----FR~LI~tRV 285 (295)
+..+...+++.+..|+.+|.++-.+ +|.-.++|+
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~kl 74 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455567777777788888777777 676666664
No 14
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=23.60 E-value=40 Score=23.06 Aligned_cols=28 Identities=11% Similarity=0.380 Sum_probs=24.2
Q ss_pred HHHHhhHHHHhhhHHHHHHHHHHHHHHH
Q 044429 260 KELEGSIEGLEKNLENLFRRLIRTRASL 287 (295)
Q Consensus 260 e~LE~~I~~lE~gle~lFR~LI~tRVSL 287 (295)
++|+.+|..++..+..+--..+|+|-+|
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL 30 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999885
No 15
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=23.34 E-value=82 Score=25.28 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhHHHHhhh------HHHHHHHH
Q 044429 253 QHVQTSLKELEGSIEGLEKN------LENLFRRL 280 (295)
Q Consensus 253 ~~~~~~le~LE~~I~~lE~g------le~lFR~L 280 (295)
+++.+.|+.+|..+..+|.+ ++.+||.+
T Consensus 18 eEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~ 51 (144)
T 3kyj_A 18 DDGAQALDAMEASLLALQAGEDAAAHVGPLFRAV 51 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 45667777888888777764 66788754
No 16
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.30 E-value=1.4e+02 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHHHhhHHHHhhh
Q 044429 249 MGKMQHVQTSLKELEGSIEGLEKN 272 (295)
Q Consensus 249 ~~~~~~~~~~le~LE~~I~~lE~g 272 (295)
++.++.++.+++.++..++.++.-
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555443
No 17
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=23.07 E-value=1e+02 Score=17.37 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.1
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 044429 98 DICGITRDSMLQIKERVQ 115 (295)
Q Consensus 98 D~C~~~rd~ll~lKe~v~ 115 (295)
|+++.+||..-++|.-+.
T Consensus 2 DIynkaqdv~~AL~nvi~ 19 (23)
T 3tj6_B 2 DIYNKAREVINAVNPVIE 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 899999999998886554
No 18
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=22.83 E-value=84 Score=26.45 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHH
Q 044429 254 HVQTSLKELEGSIEGLEKNLENLFRRLI 281 (295)
Q Consensus 254 ~~~~~le~LE~~I~~lE~gle~lFR~LI 281 (295)
.+..++.+++..+.+|++|++.+++++.
T Consensus 98 ~il~Kakei~e~~~~L~egi~~i~~~~~ 125 (186)
T 3n06_A 98 AILSKAVEIEEQTKRLLERMELIVSQVH 125 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556888899999999999999988763
No 19
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.30 E-value=1.6e+02 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHH
Q 044429 250 GKMQHVQTSLKELEGSIEGLEKNLENLFRRLIRT 283 (295)
Q Consensus 250 ~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~t 283 (295)
.++..+..++.+|...++++|.+=+..|-.|-+.
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999999887553
No 20
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.17 E-value=3.2e+02 Score=22.20 Aligned_cols=67 Identities=7% Similarity=0.151 Sum_probs=45.6
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCCCc------cchhhhHHHHHHHHhhhHHHHHHHHHHHh
Q 044429 91 DVSVKLLDICGITRDSMLQIKERVQGLHSMARRRKGDS------SIENTVASYTCFRKKMNKDAKKFIATLKQ 157 (295)
Q Consensus 91 D~sl~LLD~C~~~rd~ll~lKe~v~eLqsalRRr~g~~------~~~~~v~~y~~~rKk~kK~i~k~l~~Lk~ 157 (295)
|+.-.++|.|...+..|-.++..+.+|+....+--+.+ .+..++......-+++-+.+.+.++.|+.
T Consensus 2 ~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~ 74 (196)
T 1fio_A 2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQR 74 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566889999999999999999999998877732221 34455555555555555555555555543
No 21
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.12 E-value=1e+02 Score=19.33 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhHHHHhhhHHHHH
Q 044429 255 VQTSLKELEGSIEGLEKNLENLF 277 (295)
Q Consensus 255 ~~~~le~LE~~I~~lE~gle~lF 277 (295)
+-.+.|+|..+-.+||++++.|=
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567777788888888887763
No 22
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=21.84 E-value=2.3e+02 Score=24.14 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=30.3
Q ss_pred HHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 044429 83 QKCIDELLDVSVKLLDICGITRDSMLQIKERVQGL 117 (295)
Q Consensus 83 ~k~vee~LD~sl~LLD~C~~~rd~ll~lKe~v~eL 117 (295)
+..+.++.|...++.|...+.+|.+..+.+..+..
T Consensus 226 ~~~l~Dv~d~~~~~~e~~~~~re~l~~l~d~~~s~ 260 (264)
T 3nvo_A 226 RRRMQDIADRLGRGLDEIDACIARTGIMADEIAQV 260 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998855543
No 23
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.17 E-value=81 Score=23.19 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=8.2
Q ss_pred HHHHHHhhHHHHhhhH
Q 044429 258 SLKELEGSIEGLEKNL 273 (295)
Q Consensus 258 ~le~LE~~I~~lE~gl 273 (295)
+++.||..|..|+..+
T Consensus 30 ~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
No 24
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=20.89 E-value=1.5e+02 Score=22.66 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=23.4
Q ss_pred CchhhHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHH
Q 044429 248 DMGKMQHVQTSLKELEGSIEGLEKNLENLFRRLIRT 283 (295)
Q Consensus 248 ~~~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~t 283 (295)
+++..+.+..++..+-....-=+..++.+||.+|..
T Consensus 54 dp~RE~~vl~~~~~~~~~~~l~~~~i~~if~~ii~~ 89 (104)
T 2gtv_X 54 DPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLIEH 89 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 344456666666655444333467789999999875
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.28 E-value=2.7e+02 Score=20.67 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 044429 252 MQHVQTSLKELEGSIEGLEKNLENLFRRLIRTRASLLNII 291 (295)
Q Consensus 252 ~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVSLLNIl 291 (295)
...+.++.+.++..|..||...+.+=..+-..+..|=.++
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777778888888888888888877777766666554444
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.18 E-value=1.5e+02 Score=19.92 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhHHHHhhhHHHHHHHH
Q 044429 252 MQHVQTSLKELEGSIEGLEKNLENLFRRL 280 (295)
Q Consensus 252 ~~~~~~~le~LE~~I~~lE~gle~lFR~L 280 (295)
++.++...++|..-++.|....+.+-++|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444444443
No 27
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.18 E-value=3.5e+02 Score=21.90 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhccC----CCccchhhhHHHHHHHHhhhHHHHHHHHHHHhh
Q 044429 96 LLDICGITRDSMLQIKERVQGLHSMARRRK----GDSSIENTVASYTCFRKKMNKDAKKFIATLKQM 158 (295)
Q Consensus 96 LLD~C~~~rd~ll~lKe~v~eLqsalRRr~----g~~~~~~~v~~y~~~rKk~kK~i~k~l~~Lk~~ 158 (295)
+++-|...++.|-.+++.+.+|+..-.+-- .+..+...+...+..-++.-+.|++.+..|+..
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999987755522 244556777778877888888888888877764
Done!