Query 044429
Match_columns 295
No_of_seqs 122 out of 317
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 05:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044429.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044429hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wu9a1 a.245.1.1 (A:191-249) 46.6 14 0.00099 24.3 4.4 33 251-283 2-34 (59)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 22.7 97 0.007 20.2 5.7 35 102-142 7-41 (68)
3 d2d8da1 a.130.1.1 (A:3-82) Cho 22.1 40 0.0029 22.4 3.6 33 250-283 46-78 (80)
4 d1tqga_ a.24.10.3 (A:) Chemota 20.2 53 0.0038 22.5 4.1 16 255-270 14-29 (105)
5 d1cuna2 a.7.1.1 (A:116-219) Sp 18.7 89 0.0065 20.7 5.1 30 249-278 29-58 (104)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 17.5 1.5E+02 0.011 20.4 6.4 35 252-286 67-101 (107)
7 d2hkja2 d.14.1.3 (A:307-470) T 17.1 9.2 0.00067 30.2 -1.0 43 103-151 120-162 (164)
8 d1u5pa2 a.7.1.1 (A:1772-1872) 16.1 1.1E+02 0.0083 19.8 5.1 29 250-278 31-59 (101)
9 d1seta1 a.2.7.1 (A:1-110) Sery 15.9 1.4E+02 0.0099 20.6 5.7 45 248-292 62-106 (110)
10 d2g5ca1 a.100.1.12 (A:201-310) 15.5 1.1E+02 0.0082 21.4 5.1 36 106-146 73-108 (110)
No 1
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.58 E-value=14 Score=24.25 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHH
Q 044429 251 KMQHVQTSLKELEGSIEGLEKNLENLFRRLIRT 283 (295)
Q Consensus 251 ~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~t 283 (295)
++..+..++.+|...++++|.+=+.-|-.|=..
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdI 34 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNI 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999887543
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=22.74 E-value=97 Score=20.21 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCccchhhhHHHHHHHH
Q 044429 102 ITRDSMLQIKERVQGLHSMARRRKGDSSIENTVASYTCFRK 142 (295)
Q Consensus 102 ~~rd~ll~lKe~v~eLqsalRRr~g~~~~~~~v~~y~~~rK 142 (295)
+|-+++.+|.+.|..|.+ |+..++..+..|-+--+
T Consensus 7 sfEe~l~~LE~IV~~LE~------g~l~Leesl~~ye~G~~ 41 (68)
T d1vp7a_ 7 DFETALAELESLVSAMEN------GTLPLEQSLSAYRRGVE 41 (68)
T ss_dssp SHHHHHHHHHHHHHHHHT------TCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHH
Confidence 467777777777777755 78888888888876555
No 3
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=22.12 E-value=40 Score=22.38 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHH
Q 044429 250 GKMQHVQTSLKELEGSIEGLEKNLENLFRRLIRT 283 (295)
Q Consensus 250 ~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~t 283 (295)
+..+.+.+++.+...+ .--...++.+||.+|..
T Consensus 46 ~RE~~v~~~~~~~~~~-~l~~~~i~~i~r~Ii~~ 78 (80)
T d2d8da1 46 KREEEMLAYLTAENPG-PFPDETIRKLFKEIFKA 78 (80)
T ss_dssp HHHHHHHHHHHHHCCS-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3334555555555443 33456679999998863
No 4
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.17 E-value=53 Score=22.54 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhHHHHh
Q 044429 255 VQTSLKELEGSIEGLE 270 (295)
Q Consensus 255 ~~~~le~LE~~I~~lE 270 (295)
+...++.++..+.++|
T Consensus 14 a~e~l~~l~~~l~~le 29 (105)
T d1tqga_ 14 TKEYLQNLNDTLLELE 29 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555554444
No 5
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.75 E-value=89 Score=20.73 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHHHhhHHHHhhhHHHHHH
Q 044429 249 MGKMQHVQTSLKELEGSIEGLEKNLENLFR 278 (295)
Q Consensus 249 ~~~~~~~~~~le~LE~~I~~lE~gle~lFR 278 (295)
...++.++++.+.++..|..-+..++.|.+
T Consensus 29 ~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~ 58 (104)
T d1cuna2 29 LAAIQGLLKKHEAFETDFTVHKDRVNDVCA 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555556666666666655555555443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=17.54 E-value=1.5e+02 Score=20.37 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHH
Q 044429 252 MQHVQTSLKELEGSIEGLEKNLENLFRRLIRTRAS 286 (295)
Q Consensus 252 ~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVS 286 (295)
..++.++++.++..|..|+...+.+=..+-.-+..
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888877776666555443
No 7
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=17.15 E-value=9.2 Score=30.20 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccchhhhHHHHHHHHhhhHHHHHH
Q 044429 103 TRDSMLQIKERVQGLHSMARRRKGDSSIENTVASYTCFRKKMNKDAKKF 151 (295)
Q Consensus 103 ~rd~ll~lKe~v~eLqsalRRr~g~~~~~~~v~~y~~~rKk~kK~i~k~ 151 (295)
.+|++...-|-..|++.||+--. -++..|++-++|+++.-+|.
T Consensus 120 sKEaIad~~EI~~EirlAl~~~~------R~L~~~l~kk~k~~~~~~k~ 162 (164)
T d2hkja2 120 GKESIAEVEDIEKEIKNALMEVA------RKLKQYLSEKRKEQEAKKKL 162 (164)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhh
Confidence 45555555566666666666441 35677777666666665554
No 8
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.15 E-value=1.1e+02 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhHHHHHH
Q 044429 250 GKMQHVQTSLKELEGSIEGLEKNLENLFR 278 (295)
Q Consensus 250 ~~~~~~~~~le~LE~~I~~lE~gle~lFR 278 (295)
+.++.+.++.+.++..|...+..++.+..
T Consensus 31 ~~~~~ll~~h~~~~~~i~~~~~~~~~l~~ 59 (101)
T d1u5pa2 31 TGVQNLRKKHKRLEAELAAHEPAIQGVLD 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566666666666666666666665543
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=15.92 E-value=1.4e+02 Score=20.64 Aligned_cols=45 Identities=16% Similarity=-0.042 Sum_probs=31.4
Q ss_pred CchhhHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 044429 248 DMGKMQHVQTSLKELEGSIEGLEKNLENLFRRLIRTRASLLNIIS 292 (295)
Q Consensus 248 ~~~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVSLLNIls 292 (295)
+.++.+.+.++...|..-|.++|..+..+.-.+-.--..+=||..
T Consensus 62 ~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~ 106 (110)
T d1seta1 62 PPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 455667777788888888888888887777666655555555544
No 10
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=15.52 E-value=1.1e+02 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccchhhhHHHHHHHHhhhH
Q 044429 106 SMLQIKERVQGLHSMARRRKGDSSIENTVASYTCFRKKMNK 146 (295)
Q Consensus 106 ~ll~lKe~v~eLqsalRRr~g~~~~~~~v~~y~~~rKk~kK 146 (295)
.+-.+.+.+.++..+|.++|+ ..+.+|+..-|+.++
T Consensus 73 ~l~~~~~~L~~~~~~l~~~D~-----~~l~~~l~~a~~~R~ 108 (110)
T d2g5ca1 73 AIEGFEKSLNHLKELIVREAE-----EELVEYLKEVKIKRM 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHh
Confidence 334444555566677777762 467777766555544
Done!