Query 044432
Match_columns 584
No_of_seqs 141 out of 223
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02514 GT13_GLCNAC-TI GT13_GL 99.9 5E-22 1.1E-26 206.3 10.5 159 60-241 2-174 (334)
2 PF03071 GNT-I: GNT-I family; 99.8 2E-19 4.3E-24 192.2 10.0 166 57-241 92-269 (434)
3 KOG1413 N-acetylglucosaminyltr 98.8 2E-08 4.3E-13 105.9 11.4 167 57-242 66-246 (411)
4 PF00535 Glycos_transf_2: Glyc 98.6 5.2E-07 1.1E-11 77.9 10.0 106 61-182 1-107 (169)
5 cd04186 GT_2_like_c Subfamily 98.4 4.3E-06 9.4E-11 73.1 11.0 101 62-180 1-101 (166)
6 cd06423 CESA_like CESA_like is 98.1 3E-05 6.5E-10 66.6 11.2 99 62-174 1-99 (180)
7 PRK11204 N-glycosyltransferase 98.1 6.7E-05 1.5E-09 78.5 14.3 117 57-198 53-170 (420)
8 cd04192 GT_2_like_e Subfamily 98.0 3.6E-05 7.9E-10 71.4 10.0 105 62-178 1-107 (229)
9 cd06439 CESA_like_1 CESA_like_ 98.0 0.00015 3.3E-09 69.3 13.3 110 54-178 25-134 (251)
10 cd04179 DPM_DPG-synthase_like 97.9 3.7E-05 8.1E-10 69.4 8.3 105 62-180 1-106 (185)
11 cd04184 GT2_RfbC_Mx_like Myxoc 97.9 0.00018 3.8E-09 66.2 12.0 107 59-179 2-109 (202)
12 cd06442 DPM1_like DPM1_like re 97.9 6.5E-05 1.4E-09 70.1 8.8 102 62-178 1-103 (224)
13 cd04185 GT_2_like_b Subfamily 97.9 0.0001 2.3E-09 68.2 10.0 103 62-179 1-105 (202)
14 cd04196 GT_2_like_d Subfamily 97.8 0.00021 4.5E-09 65.7 11.8 104 62-180 2-106 (214)
15 PF13641 Glyco_tranf_2_3: Glyc 97.8 6.3E-05 1.4E-09 70.8 8.0 107 59-178 2-111 (228)
16 cd02525 Succinoglycan_BP_ExoA 97.8 0.00018 4E-09 67.6 10.5 105 60-178 2-106 (249)
17 TIGR03111 glyc2_xrt_Gpos1 puta 97.8 0.00062 1.4E-08 73.0 15.9 119 59-200 50-169 (439)
18 PRK14583 hmsR N-glycosyltransf 97.8 0.00052 1.1E-08 73.5 15.2 117 58-198 75-191 (444)
19 cd06420 GT2_Chondriotin_Pol_N 97.7 0.00023 5E-09 64.3 9.8 103 62-178 1-104 (182)
20 cd06437 CESA_CaSu_A2 Cellulose 97.7 0.00041 8.8E-09 66.1 11.6 109 60-178 3-112 (232)
21 cd06434 GT2_HAS Hyaluronan syn 97.7 0.0005 1.1E-08 64.8 11.9 112 59-199 1-113 (235)
22 PF03407 Nucleotid_trans: Nucl 97.7 0.00035 7.5E-09 67.0 10.4 156 363-528 3-174 (212)
23 cd02510 pp-GalNAc-T pp-GalNAc- 97.6 0.00044 9.5E-09 69.3 11.4 108 62-180 2-110 (299)
24 cd04195 GT2_AmsE_like GT2_AmsE 97.6 0.00062 1.3E-08 62.7 11.5 104 62-180 2-107 (201)
25 cd06438 EpsO_like EpsO protein 97.6 0.00032 6.9E-09 64.8 9.6 103 62-179 1-107 (183)
26 cd02520 Glucosylceramide_synth 97.6 0.0005 1.1E-08 64.3 10.7 105 60-178 3-111 (196)
27 cd06433 GT_2_WfgS_like WfgS an 97.6 0.00079 1.7E-08 60.6 11.6 99 62-178 2-100 (202)
28 cd06421 CESA_CelA_like CESA_Ce 97.6 0.00063 1.4E-08 63.8 11.2 108 59-180 2-111 (234)
29 cd06427 CESA_like_2 CESA_like_ 97.6 0.00077 1.7E-08 65.1 12.1 108 59-179 2-110 (241)
30 PLN02726 dolichyl-phosphate be 97.6 0.00098 2.1E-08 64.7 12.4 113 57-180 8-120 (243)
31 cd00761 Glyco_tranf_GTA_type G 97.5 0.00054 1.2E-08 57.4 8.8 98 62-174 1-98 (156)
32 TIGR03472 HpnI hopanoid biosyn 97.5 0.0021 4.5E-08 67.4 14.6 107 58-178 41-151 (373)
33 PF05060 MGAT2: N-acetylglucos 97.5 0.002 4.3E-08 69.0 14.5 169 57-246 30-251 (356)
34 cd06435 CESA_NdvC_like NdvC_li 97.4 0.0023 4.9E-08 60.8 12.1 105 62-178 2-109 (236)
35 cd06436 GlcNAc-1-P_transferase 97.3 0.0021 4.6E-08 60.3 10.9 112 62-199 1-125 (191)
36 cd02526 GT2_RfbF_like RfbF is 97.2 0.0036 7.9E-08 59.1 11.4 94 62-175 1-97 (237)
37 PRK10073 putative glycosyl tra 97.2 0.0029 6.2E-08 65.7 11.6 104 59-179 7-111 (328)
38 PTZ00260 dolichyl-phosphate be 97.2 0.015 3.2E-07 60.8 16.7 116 55-180 67-189 (333)
39 cd04187 DPM1_like_bac Bacteria 97.2 0.0016 3.5E-08 59.4 8.3 103 62-178 1-105 (181)
40 COG0463 WcaA Glycosyltransfera 97.2 0.0067 1.4E-07 50.7 11.1 101 57-173 2-102 (291)
41 cd04188 DPG_synthase DPG_synth 97.1 0.0017 3.8E-08 61.0 7.9 105 62-179 1-108 (211)
42 TIGR03469 HonB hopene-associat 97.1 0.0095 2.1E-07 62.8 14.2 113 57-180 39-160 (384)
43 PRK10018 putative glycosyl tra 97.1 0.0058 1.3E-07 62.5 12.3 108 58-180 5-112 (279)
44 cd02522 GT_2_like_a GT_2_like_ 97.1 0.0038 8.2E-08 58.2 9.8 93 60-174 1-93 (221)
45 COG1216 Predicted glycosyltran 97.0 0.0073 1.6E-07 61.5 11.4 111 57-183 2-114 (305)
46 cd02511 Beta4Glucosyltransfera 96.9 0.0083 1.8E-07 58.1 10.4 97 60-180 2-98 (229)
47 TIGR03030 CelA cellulose synth 96.9 0.021 4.6E-07 65.6 15.3 114 59-178 132-253 (713)
48 cd04191 Glucan_BSP_ModH Glucan 96.6 0.027 5.9E-07 56.9 12.6 121 61-197 2-130 (254)
49 cd06913 beta3GnTL1_like Beta 1 96.6 0.02 4.4E-07 54.1 10.8 105 62-178 1-109 (219)
50 PRK11498 bcsA cellulose syntha 96.6 0.039 8.4E-07 65.1 14.9 103 58-178 260-364 (852)
51 PRK10063 putative glycosyl tra 96.4 0.027 5.9E-07 56.2 10.8 105 58-177 1-106 (248)
52 PRK10714 undecaprenyl phosphat 96.4 0.041 8.9E-07 57.3 12.1 111 56-179 4-116 (325)
53 PRK05454 glucosyltransferase M 96.3 0.045 9.7E-07 63.2 13.2 129 54-197 120-255 (691)
54 TIGR01556 rhamnosyltran L-rham 96.2 0.025 5.4E-07 56.1 9.4 97 65-180 1-100 (281)
55 cd04190 Chitin_synth_C C-termi 96.1 0.038 8.1E-07 54.3 9.9 103 62-201 1-112 (244)
56 COG1215 Glycosyltransferases, 95.7 0.23 5E-06 51.8 14.0 106 58-178 54-162 (439)
57 PRK13915 putative glucosyl-3-p 95.3 0.11 2.4E-06 53.9 10.0 109 57-178 30-141 (306)
58 KOG2791 N-acetylglucosaminyltr 94.3 0.46 1E-05 51.4 11.5 202 54-281 113-388 (455)
59 PRK14716 bacteriophage N4 adso 93.4 0.54 1.2E-05 52.7 10.7 108 57-178 65-183 (504)
60 PF04666 Glyco_transf_54: N-Ac 92.6 1.5 3.3E-05 46.3 12.1 115 60-182 54-198 (297)
61 PF09258 Glyco_transf_64: Glyc 92.2 1.1 2.4E-05 45.7 10.1 108 62-199 3-113 (247)
62 PF10111 Glyco_tranf_2_2: Glyc 92.1 2.5 5.5E-05 42.8 12.7 99 62-176 2-111 (281)
63 KOG2978 Dolichol-phosphate man 91.2 1.4 3.1E-05 44.7 9.4 114 59-184 4-119 (238)
64 PF01755 Glyco_transf_25: Glyc 89.0 3.6 7.8E-05 39.1 10.0 45 136-180 66-112 (200)
65 PRK11234 nfrB bacteriophage N4 87.6 4 8.6E-05 48.0 11.0 109 58-178 63-180 (727)
66 KOG2977 Glycosyltransferase [G 83.6 8.1 0.00017 41.4 9.9 140 26-180 28-184 (323)
67 PRK15489 nfrB bacteriophage N4 77.9 11 0.00025 44.2 9.6 106 59-178 72-188 (703)
68 COG2943 MdoH Membrane glycosyl 75.1 14 0.00031 42.6 9.0 110 57-179 143-266 (736)
69 PF03142 Chitin_synth_2: Chiti 66.9 1.6E+02 0.0035 33.9 15.1 40 153-201 201-240 (527)
70 COG1210 GalU UDP-glucose pyrop 66.8 20 0.00044 38.2 7.5 77 113-197 84-160 (291)
71 PF05679 CHGN: Chondroitin N-a 63.7 90 0.0019 35.2 12.3 116 55-176 244-364 (499)
72 cd06532 Glyco_transf_25 Glycos 62.3 6 0.00013 35.9 2.4 34 136-169 63-98 (128)
73 PLN03183 acetylglucosaminyltra 62.2 1.8E+02 0.004 32.6 14.1 78 57-147 77-159 (421)
74 KOG4179 Lysyl hydrolase/glycos 60.9 21 0.00045 40.2 6.5 104 67-183 300-408 (568)
75 COG3306 Glycosyltransferase in 50.9 15 0.00032 38.0 3.4 43 138-180 69-113 (255)
76 PF13671 AAA_33: AAA domain; P 45.3 75 0.0016 28.0 6.5 71 367-439 3-80 (143)
77 PTZ00088 adenylate kinase 1; P 42.1 53 0.0011 33.3 5.6 32 364-395 7-43 (229)
78 PF13207 AAA_17: AAA domain; P 41.4 58 0.0013 28.0 5.1 70 366-440 2-80 (121)
79 PF13506 Glyco_transf_21: Glyc 39.5 66 0.0014 30.9 5.6 29 152-180 30-58 (175)
80 PRK12857 fructose-1,6-bisphosp 37.8 19 0.00041 37.9 1.8 102 325-443 6-111 (284)
81 PRK08610 fructose-bisphosphate 37.6 21 0.00044 37.8 2.0 23 422-444 93-115 (286)
82 COG1209 RfbA dTDP-glucose pyro 37.4 2.4E+02 0.0051 30.4 9.6 118 64-200 26-148 (286)
83 cd04906 ACT_ThrD-I_1 First of 34.2 79 0.0017 26.9 4.7 23 62-84 4-26 (85)
84 PRK12737 gatY tagatose-bisphos 33.9 24 0.00052 37.2 1.8 92 336-444 18-112 (284)
85 PRK05835 fructose-bisphosphate 33.6 25 0.00054 37.7 1.8 23 422-444 90-112 (307)
86 PRK12738 kbaY tagatose-bisphos 32.6 26 0.00055 37.1 1.7 94 334-444 16-112 (286)
87 PRK07709 fructose-bisphosphate 32.4 27 0.00058 36.9 1.8 23 422-444 93-115 (285)
88 TIGR00167 cbbA ketose-bisphosp 32.4 25 0.00054 37.1 1.7 97 326-444 7-115 (288)
89 PRK09195 gatY tagatose-bisphos 31.3 28 0.00061 36.7 1.8 90 337-444 19-112 (284)
90 PRK02496 adk adenylate kinase; 31.1 93 0.002 29.3 5.1 32 364-395 2-38 (184)
91 TIGR01858 tag_bisphos_ald clas 31.0 29 0.00062 36.6 1.8 94 334-444 14-110 (282)
92 PF01116 F_bP_aldolase: Fructo 30.3 27 0.00059 36.7 1.5 24 421-444 88-111 (287)
93 PF12804 NTP_transf_3: MobA-li 28.0 4.5E+02 0.0098 23.7 10.1 92 67-181 22-114 (160)
94 PRK07084 fructose-bisphosphate 27.5 37 0.00081 36.6 2.0 95 333-444 21-123 (321)
95 PF00806 PUF: Pumilio-family R 26.9 32 0.0007 24.4 1.0 11 419-429 16-26 (35)
96 PRK14528 adenylate kinase; Pro 26.7 1.2E+02 0.0026 29.2 5.1 33 363-395 1-38 (186)
97 PF00483 NTP_transferase: Nucl 26.6 5E+02 0.011 25.1 9.4 97 67-180 28-129 (248)
98 KOG3737 Predicted polypeptide 26.4 2.1E+02 0.0046 32.5 7.3 107 61-178 159-265 (603)
99 PRK00279 adk adenylate kinase; 26.1 1.3E+02 0.0028 29.4 5.2 30 366-395 3-37 (215)
100 cd00947 TBP_aldolase_IIB Tagat 25.8 39 0.00085 35.5 1.7 93 335-444 12-107 (276)
101 PRK13399 fructose-1,6-bisphosp 25.6 42 0.00091 36.6 1.9 20 422-441 91-110 (347)
102 cd01428 ADK Adenylate kinase ( 24.5 1.5E+02 0.0031 27.7 5.1 21 375-395 15-36 (194)
103 cd03576 NTR_PCOLCE NTR domain, 24.5 54 0.0012 30.8 2.2 30 356-393 76-105 (124)
104 KOG1278 Endosomal membrane pro 24.3 67 0.0014 37.4 3.2 84 267-359 27-110 (628)
105 PRK03839 putative kinase; Prov 22.4 1.3E+02 0.0028 28.2 4.3 30 366-395 3-37 (180)
106 PRK07998 gatY putative fructos 22.4 52 0.0011 34.8 1.8 23 421-443 89-111 (283)
107 TIGR01351 adk adenylate kinase 21.7 2.3E+02 0.005 27.5 6.0 29 367-395 3-36 (210)
108 cd04181 NTP_transferase NTP_tr 21.3 6.8E+02 0.015 23.4 9.7 90 67-175 27-117 (217)
109 TIGR01521 FruBisAldo_II_B fruc 21.1 54 0.0012 35.8 1.7 19 422-440 89-107 (347)
110 TIGR01489 DKMTPPase-SF 2,3-dik 20.9 80 0.0017 29.0 2.6 26 437-470 163-188 (188)
111 PF03452 Anp1: Anp1; InterPro 20.7 1E+03 0.023 25.3 11.4 111 54-169 21-158 (269)
112 PRK15480 glucose-1-phosphate t 20.5 8.2E+02 0.018 25.6 10.1 96 65-177 30-126 (292)
No 1
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.86 E-value=5e-22 Score=206.27 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=112.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC--
Q 044432 60 LIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN-- 137 (584)
Q Consensus 60 I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N-- 137 (584)
+||+|++||||++|+|+|+||.++.+.....+|+|+.||++.+ ..+.++...+-++.++++ ..+..|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~-----~~~~v~~~~~~i~~i~~~------~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE-----VADVAKSFGDGVTHIQHP------PISIKNVN 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchH-----HHHHHHhhccccEEEEcc------cccccccC
Confidence 6999999999999999999999988677788999999998521 112111110011222221 122333
Q ss_pred --------cchhHHHhhhc-cCCC--CCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecCCCCCC
Q 044432 138 --------AGLQAQWLEAW-WPTS--DHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRPRFVPG 206 (584)
Q Consensus 138 --------lGLa~sIIEgw-yPts--~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P~f~~~ 206 (584)
.+++.+...|. +..+ ++++|||||||+++||+||.||+++|..|+.+ ++|++||+|+.. +
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D------~~v~~ISa~Ndn---G 141 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEED------PSLWCISAWNDN---G 141 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcC------CCEEEEEeeccC---C
Confidence 23455433342 2222 48999999999999999999999999999998 499999999852 1
Q ss_pred CCCCcccCCC-CCCceeeecCCcchhhcCccchHHH
Q 044432 207 KHGNKIHLDN-GTQLFLYQLVGTWGQLLFPQPWKEF 241 (584)
Q Consensus 207 k~~~~i~~d~-~~d~FL~Q~PsSWGwatw~d~WkeF 241 (584)
.....+. +...|+....++|||++|++.|+++
T Consensus 142 ---~~~~~~~~~~~lyrs~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 142 ---KEHFVDDTPSLLYRTDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ---cccccCCCcceEEEecCCCchHHHHHHHHHHHh
Confidence 1111111 3457777888999999999999987
No 2
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=99.79 E-value=2e-19 Score=192.16 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=95.8
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHH-HHH---hhccccC-CCceEE
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAI-LRF---LDGFEWK-FGDKFV 131 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrel-lk~---L~gF~WP-~g~vtI 131 (584)
...+||+|||||||++|+|||+||.+++..+...+|+|+.||... .+ .++ ..+ +..++.| +.++++
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~------~~---~~vi~~y~~~v~~i~~~~~~~i~~ 162 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDE------EV---AEVIKSYGDQVTYIQHPDFSPITI 162 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-H------HH---HHHHHGGGGGSEEEE-S--S----
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcH------HH---HHHHHHhhhhheeeecCCcCCcee
Confidence 445999999999999999999999998876677899999999741 12 222 222 2222233 223333
Q ss_pred EeecCC----cchhHHHhhhc-cC--CCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecCCCC
Q 044432 132 HYRTAN----AGLQAQWLEAW-WP--TSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRPRFV 204 (584)
Q Consensus 132 i~R~~N----lGLa~sIIEgw-yP--ts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P~f~ 204 (584)
..+..+ .+++++...+. .. ...+++|||||||+++||+||.||+.++..|..| ++||+||+|+-.-.
T Consensus 163 ~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D------~sl~ciSawNdnG~ 236 (434)
T PF03071_consen 163 PPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLEND------PSLWCISAWNDNGK 236 (434)
T ss_dssp -TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-------TTEEEEES--TT-B
T ss_pred CcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcC------CCeEEEEccccCCc
Confidence 332212 35677776553 11 2258899999999999999999999999998887 59999999986411
Q ss_pred CCCCCCcccCCCCCCceeeecCCcchhhcCccchHHH
Q 044432 205 PGKHGNKIHLDNGTQLFLYQLVGTWGQLLFPQPWKEF 241 (584)
Q Consensus 205 ~~k~~~~i~~d~~~d~FL~Q~PsSWGwatw~d~WkeF 241 (584)
. ..++...+...|..-+-.+|||++|++.|.|+
T Consensus 237 ~----~~~~~~~~~~lyRsdffpglGWml~r~~w~el 269 (434)
T PF03071_consen 237 E----HFVDDSRPSLLYRSDFFPGLGWMLTRELWDEL 269 (434)
T ss_dssp G----GGS-TT-TT-EEEESS---SSEEEEHHHHHHH
T ss_pred c----ccccCCCccceEecccCCchHHHhhHHHHHhh
Confidence 1 11221123445666677899999999999874
No 3
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=98.83 E-value=2e-08 Score=105.88 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=106.7
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhc---cccCCC---ceE
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDG---FEWKFG---DKF 130 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~g---F~WP~g---~vt 130 (584)
...|||+||+.|||+.++|+++.|-+..+.+..-+++|.-|+.+. .|. .+++.+-+. ..-|.+ +++
T Consensus 66 ~~v~pvvVf~csR~~~lr~~v~kll~yrPsaekfpiiVSQD~~~e------~vk--~~~~~~g~~v~~i~~~~h~~~ei~ 137 (411)
T KOG1413|consen 66 PPVIPVVVFACSRADALRRHVKKLLEYRPSAEKFPIIVSQDCEKE------AVK--KKLLSYGSDVSHIQHPMHLKDEIS 137 (411)
T ss_pred CCceeEEEEecCcHHHHHHHHHHHHHhCcchhhcCEEEeccCCcH------HHH--HHHHHhccchhhhcCccccccccc
Confidence 455999999999999999999999998877777899999999752 233 233333322 223322 333
Q ss_pred EEeecCC-cch---hHHHhhh----ccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecCC
Q 044432 131 VHYRTAN-AGL---QAQWLEA----WWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRPR 202 (584)
Q Consensus 131 Ii~R~~N-lGL---a~sIIEg----wyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P~ 202 (584)
|-.|... .|+ +++..=+ |. ...++++|+.|||+.++|+||.|+..+.-.-+.+ ++||++|.++-.
T Consensus 138 v~~~~~k~~~Yy~IarHYkwAL~q~F~-~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D------~siwcvsaWNDN 210 (411)
T KOG1413|consen 138 VPPRHKKFNAYYKIARHYKWALNQLFI-VFRESRVIITEDDLNIAPDFFSYFRNTIILLKGD------PSIWCVSAWNDN 210 (411)
T ss_pred cCCcccccchhHHHHHHHHHHHhhHHh-hcCCceeEEecchhhhhhHHHHHHHHHHHHHhcC------CceEEeeeeccC
Confidence 3333332 122 2222111 11 2258999999999999999999999886554444 799999999763
Q ss_pred CCCCCCCCcccCCCCCCceeeecCCcchhhcCccchHHHH
Q 044432 203 FVPGKHGNKIHLDNGTQLFLYQLVGTWGQLLFPQPWKEFR 242 (584)
Q Consensus 203 f~~~k~~~~i~~d~~~d~FL~Q~PsSWGwatw~d~WkeF~ 242 (584)
-. ...+....+.-.|-.-+----||..-++.|.|+-
T Consensus 211 Gk----~~~Id~~~~~~lYRtDFFpGLGWml~~~~W~ELs 246 (411)
T KOG1413|consen 211 GK----KQTIDSTRPSLLYRTDFFPGLGWMLTKKLWEELS 246 (411)
T ss_pred CC----cccccccccchhhhccccccchHHHHHHHHHhhC
Confidence 11 1112211122222222223579999999999975
No 4
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.55 E-value=5.2e-07 Score=77.94 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=79.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHH-HHhhccccCCCceEEEeecCCcc
Q 044432 61 IIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAIL-RFLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 61 ~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrell-k~L~gF~WP~g~vtIi~R~~NlG 139 (584)
.|++.+|||++.|.|+|+||.+. .....+++|--|++.++ +.+++ ++.+ ....++++++++|.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q--~~~~~eiivvdd~s~d~---------~~~~~~~~~~----~~~~i~~i~~~~n~g 65 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQ--TDPDFEIIVVDDGSTDE---------TEEILEEYAE----SDPNIRYIRNPENLG 65 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHH--SGCEEEEEEEECS-SSS---------HHHHHHHHHC----CSTTEEEEEHCCCSH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhc--cCCCEEEEEeccccccc---------cccccccccc----ccccccccccccccc
Confidence 38899999999999999999997 23466888888887422 12333 3333 235899999999999
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhc
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYY 182 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~ 182 (584)
++.++-.|+--. ..+++++++||.++.|.|+.-+..++.++.
T Consensus 66 ~~~~~n~~~~~a-~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~ 107 (169)
T PF00535_consen 66 FSAARNRGIKHA-KGEYILFLDDDDIISPDWLEELVEALEKNP 107 (169)
T ss_dssp HHHHHHHHHHH---SSEEEEEETTEEE-TTHHHHHHHHHHHCT
T ss_pred cccccccccccc-ceeEEEEeCCCceEcHHHHHHHHHHHHhCC
Confidence 999888885222 355999999999999999999999987743
No 5
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.36 E-value=4.3e-06 Score=73.14 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=77.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchh
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQ 141 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa 141 (584)
|++++|||++.+.|+|+||.+..+ ....++|..|++.++ +.+ .+..+ . ..++++....|.|++
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~--~~~~iiivdd~s~~~---------~~~---~~~~~-~--~~~~~~~~~~~~g~~ 63 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTY--PDFEVIVVDNASTDG---------SVE---LLREL-F--PEVRLIRNGENLGFG 63 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccC--CCeEEEEEECCCCch---------HHH---HHHHh-C--CCeEEEecCCCcChH
Confidence 578999999999999999999765 466889988887421 122 22222 1 267888889999997
Q ss_pred HHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 142 AQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 142 ~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.+.-.++--. +.+++++++||+.++|.++.-+...+..
T Consensus 64 ~a~n~~~~~~-~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 64 AGNNQGIREA-KGDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred HHhhHHHhhC-CCCEEEEECCCcEECccHHHHHHHHHHh
Confidence 7776664212 6889999999999999999998887655
No 6
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.14 E-value=3e-05 Score=66.56 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=72.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchh
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQ 141 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa 141 (584)
|++.+|||++.+.++|+||.+..+ ...+++|--|++.++. .+ .+.+....+ ...+.++.+..|.|++
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~--~~~~iivvdd~s~d~t-----~~---~~~~~~~~~---~~~~~~~~~~~~~g~~ 67 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDY--PKLEVIVVDDGSTDDT-----LE---ILEELAALY---IRRVLVVRDKENGGKA 67 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCC--CceEEEEEeCCCccch-----HH---HHHHHhccc---cceEEEEEecccCCch
Confidence 578899999999999999999765 4678888888874321 11 122222222 1356788889999997
Q ss_pred HHHhhhccCCCCCceEEEEcCCceeChhHHHHH
Q 044432 142 AQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFL 174 (584)
Q Consensus 142 ~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ym 174 (584)
.+.-.++--. ..++++++++|..+.|.++.-|
T Consensus 68 ~~~n~~~~~~-~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 68 GALNAGLRHA-KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred HHHHHHHHhc-CCCEEEEECCCCCcChHHHHHH
Confidence 7776664212 6789999999999999998888
No 7
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.06 E-value=6.7e-05 Score=78.54 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=86.8
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeec
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRT 135 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~ 135 (584)
...+.|++.+||+.+.+.++++||.+.+|+ ..+++|--|++.++. .++++ +.+.+ .+++++++.
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t---------~~~l~~~~~~~----~~v~~i~~~ 117 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYP--NYEVIAINDGSSDNT---------GEILDRLAAQI----PRLRVIHLA 117 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccH---------HHHHHHHHHhC----CcEEEEEcC
Confidence 345899999999999999999999998886 567888888875321 22222 22322 468888889
Q ss_pred CCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEe
Q 044432 136 ANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASL 198 (584)
Q Consensus 136 ~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISL 198 (584)
+|.|.+.+.=.|.- ..+.++++++++|.++.|+++..+...++. + +++..+++
T Consensus 118 ~n~Gka~aln~g~~-~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~---~------~~v~~v~g 170 (420)
T PRK11204 118 ENQGKANALNTGAA-AARSEYLVCIDGDALLDPDAAAYMVEHFLH---N------PRVGAVTG 170 (420)
T ss_pred CCCCHHHHHHHHHH-HcCCCEEEEECCCCCCChhHHHHHHHHHHh---C------CCeEEEEC
Confidence 99998776655531 236899999999999999999988887643 2 46777765
No 8
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.01 E-value=3.6e-05 Score=71.44 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=75.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeec--CCcc
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRT--ANAG 139 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~--~NlG 139 (584)
|++.+||+++.+.+||+||.+..|..+..+++|--|++.+. +.+++++.. ..+...+.++.+. .|.|
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~---------t~~~~~~~~--~~~~~~v~~~~~~~~~~~g 69 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDG---------TVQILEFAA--AKPNFQLKILNNSRVSISG 69 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcC---------hHHHHHHHH--hCCCcceEEeeccCcccch
Confidence 68899999999999999999988876567888887776421 233333221 2333466777666 5788
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.+.++-.+.. ....++++++++|..+.|.++.-|..++
T Consensus 70 ~~~a~n~g~~-~~~~d~i~~~D~D~~~~~~~l~~l~~~~ 107 (229)
T cd04192 70 KKNALTTAIK-AAKGDWIVTTDADCVVPSNWLLTFVAFI 107 (229)
T ss_pred hHHHHHHHHH-HhcCCEEEEECCCcccCHHHHHHHHHHh
Confidence 8776655532 2257899999999999999888777665
No 9
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.95 E-value=0.00015 Score=69.30 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=81.1
Q ss_pred CCCceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEe
Q 044432 54 HSSNFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHY 133 (584)
Q Consensus 54 ~~~~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~ 133 (584)
.+....+.|++.+||+.+.+.++|+|+.+..+.....+++|-.|++.+. +.+++ +.+. ...++++.
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~---------t~~~~---~~~~--~~~v~~i~ 90 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDG---------TAEIA---REYA--DKGVKLLR 90 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCcc---------HHHHH---HHHh--hCcEEEEE
Confidence 3345568999999999999999999999888876557888888886421 12222 2221 01578888
Q ss_pred ecCCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 134 RTANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 134 R~~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
...|.|.+.+.-.++. ....+.++++++|..+.|.++.=+..++
T Consensus 91 ~~~~~g~~~a~n~gi~-~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 134 (251)
T cd06439 91 FPERRGKAAALNRALA-LATGEIVVFTDANALLDPDALRLLVRHF 134 (251)
T ss_pred cCCCCChHHHHHHHHH-HcCCCEEEEEccccCcCHHHHHHHHHHh
Confidence 8899998777666642 1246899999999999998888777665
No 10
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=97.93 E-value=3.7e-05 Score=69.43 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=77.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHH-HHhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAIL-RFLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrell-k~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++.+||+++++.+||+||.+..+.....+++|--|++.++. .+++ ++...+ ..++++..++|.|.
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~---------~~~~~~~~~~~----~~~~~~~~~~n~G~ 67 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGT---------AEIARELAARV----PRVRVIRLSRNFGK 67 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCCh---------HHHHHHHHHhC----CCeEEEEccCCCCc
Confidence 678999999999999999999876444567888877764221 2222 233333 45688999999999
Q ss_pred hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 141 QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 141 a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
+.+.-.++.-. ..+++++|++|..++|.++.-+..++..
T Consensus 68 ~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 68 GAAVRAGFKAA-RGDIVVTMDADLQHPPEDIPKLLEKLLE 106 (185)
T ss_pred cHHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 88777774212 3489999999999999998877776433
No 11
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.89 E-value=0.00018 Score=66.15 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCc-hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC
Q 044432 59 TLIIKVLTFNRL-NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP-~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N 137 (584)
.+.|++.+||+. +.+.+||+||.+..+. ..+++|.-|++.++ .+ .++++ .+......+++++.+.|
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~-----~~---~~~~~---~~~~~~~~~~~~~~~~~ 68 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYP--NWELCIADDASTDP-----EV---KRVLK---KYAAQDPRIKVVFREEN 68 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCh-----HH---HHHHH---HHHhcCCCEEEEEcccC
Confidence 478999999999 9999999999986654 45777776776421 12 22222 22112246788888999
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
.|.+.++-.|+- ....++++++++|..+.|.++.-+..++.
T Consensus 69 ~g~~~a~n~g~~-~a~~d~i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 69 GGISAATNSALE-LATGEFVALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred CCHHHHHHHHHH-hhcCCEEEEECCCCcCChHHHHHHHHHHH
Confidence 999877766642 22578999999999999999988888763
No 12
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=97.86 E-value=6.5e-05 Score=70.09 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=75.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++.+||++++|.++|+||.+..+ ....+++|--|++.++. .++++ +.+.. ..+.++.++.|.|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t---------~~~~~~~~~~~----~~i~~~~~~~n~G~ 66 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-GIDYEIIVVDDNSPDGT---------AEIVRELAKEY----PRVRLIVRPGKRGL 66 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCCCCh---------HHHHHHHHHhC----CceEEEecCCCCCh
Confidence 578899999999999999998765 34567888878764221 22222 22322 45788889999999
Q ss_pred hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 141 QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 141 a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
+.+.-.|+- ....+++++|++|.++.|.++.-+-..+
T Consensus 67 ~~a~n~g~~-~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 103 (224)
T cd06442 67 GSAYIEGFK-AARGDVIVVMDADLSHPPEYIPELLEAQ 103 (224)
T ss_pred HHHHHHHHH-HcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 888777742 1245899999999999999998877765
No 13
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.86 E-value=0.0001 Score=68.17 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=72.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchh
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQ 141 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa 141 (584)
|++++|||++.+.+||+||.+..+. ..+++|.-|++.+ .+.+ .++.+...+ .++++....|.|.+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~--~~eiiivD~~s~d---------~t~~---~~~~~~~~~-~i~~~~~~~n~g~~ 65 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRP--PDHIIVIDNASTD---------GTAE---WLTSLGDLD-NIVYLRLPENLGGA 65 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCC--CceEEEEECCCCc---------chHH---HHHHhcCCC-ceEEEECccccchh
Confidence 5788999999999999999987665 3456666666532 1223 333333322 26788888899986
Q ss_pred HHHhhhcc-C-CCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 142 AQWLEAWW-P-TSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 142 ~sIIEgwy-P-ts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
.++-.++- . ....+++++|+||..+.|.++.-+..++.
T Consensus 66 ~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 66555531 1 22578999999999999999887777653
No 14
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.85 E-value=0.00021 Score=65.70 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=78.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++.+|||++.|.++|+||.+..+. ..+++|--|++.+. +.++++ +... .| ..++++....|.|.
T Consensus 2 IvIp~yn~~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~---------t~~~~~~~~~~--~~-~~~~~~~~~~~~G~ 67 (214)
T cd04196 2 VLMATYNGEKYLREQLDSILAQTYK--NDELIISDDGSTDG---------TVEIIKEYIDK--DP-FIIILIRNGKNLGV 67 (214)
T ss_pred EEEEecCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCC---------cHHHHHHHHhc--CC-ceEEEEeCCCCccH
Confidence 7899999999999999999998765 57788888887532 123322 2222 33 36778888899999
Q ss_pred hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 141 QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 141 a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
+.++-.|.. ....+++++|++|....|.++.-+...+..
T Consensus 68 ~~~~n~g~~-~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 68 ARNFESLLQ-AADGDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHHHHH-hCCCCEEEEECCCcccChhHHHHHHHHHhc
Confidence 888777732 225789999999999999999888887543
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.82 E-value=6.3e-05 Score=70.76 Aligned_cols=107 Identities=24% Similarity=0.286 Sum_probs=65.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCc
Q 044432 59 TLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANA 138 (584)
Q Consensus 59 ~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~Nl 138 (584)
+|.|++.+||+++.+.++|+||.+.+| ...+++|-.|++..+. .+..++ +... +|...++++.+..|.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~--~~~~v~vvd~~~~~~~-----~~~~~~---~~~~--~~~~~v~vi~~~~~~ 69 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDY--PRLEVVVVDDGSDDET-----AEILRA---LAAR--YPRVRVRVIRRPRNP 69 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHH--HTEEEEEEEE-SSS-G-----CTTHHH---HHHT--TGG-GEEEEE----H
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCC--CCeEEEEEECCCChHH-----HHHHHH---HHHH--cCCCceEEeecCCCC
Confidence 378999999999999999999999877 4678888777754221 222222 2233 343357888887766
Q ss_pred c---hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 139 G---LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 139 G---La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
| .+.++-+++- ....+.+++|+||..+.|.|+.-+..++
T Consensus 70 g~~~k~~a~n~~~~-~~~~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 70 GPGGKARALNEALA-AARGDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHHHHHHH-H---SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred CcchHHHHHHHHHH-hcCCCEEEEECCCcEECHHHHHHHHHHH
Confidence 6 3444444421 1258899999999999999999988887
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.78 E-value=0.00018 Score=67.60 Aligned_cols=105 Identities=15% Similarity=0.019 Sum_probs=71.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcc
Q 044432 60 LIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 60 I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlG 139 (584)
+.|++.+||+++.+.++|+||.+..+.....+++|.-|++.++ +.++++. +......+.++.. .+.|
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~---------~~~~~~~---~~~~~~~v~~i~~-~~~~ 68 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDG---------TREIVQE---YAAKDPRIRLIDN-PKRI 68 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCcc---------HHHHHHH---HHhcCCeEEEEeC-CCCC
Confidence 6799999999999999999999877764566788877765421 1222222 2111235666654 4556
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.+.++-.|+-- ...+++++|.||.++.|.++.-+...+
T Consensus 69 ~~~a~N~g~~~-a~~d~v~~lD~D~~~~~~~l~~~~~~~ 106 (249)
T cd02525 69 QSAGLNIGIRN-SRGDIIIRVDAHAVYPKDYILELVEAL 106 (249)
T ss_pred chHHHHHHHHH-hCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 65554444311 257899999999999999887766543
No 17
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=97.78 E-value=0.00062 Score=73.05 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=87.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCC
Q 044432 59 TLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~N 137 (584)
.+.|++.+||..+.+.+||+||.+.+|+.+.++++|--|+..++ +.++++ +.+.+ +.+.++....|
T Consensus 50 ~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~---------T~~il~~~~~~~----~~v~v~~~~~~ 116 (439)
T TIGR03111 50 DITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDD---------SFQVFCRAQNEF----PGLSLRYMNSD 116 (439)
T ss_pred CEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChh---------HHHHHHHHHHhC----CCeEEEEeCCC
Confidence 47899999999999999999999999987777888887776422 223322 22333 46777777788
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeec
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQR 200 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~ 200 (584)
.|.+.+.-.|.. .+..++++++++|..+.|+++.-+..++.. + +.+..+.+..
T Consensus 117 ~Gka~AlN~gl~-~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~---~------~~v~~v~g~~ 169 (439)
T TIGR03111 117 QGKAKALNAAIY-NSIGKYIIHIDSDGKLHKDAIKNMVTRFEN---N------PDIHAMTGVI 169 (439)
T ss_pred CCHHHHHHHHHH-HccCCEEEEECCCCCcChHHHHHHHHHHHh---C------CCeEEEEeEE
Confidence 998776666642 235789999999999999999888877642 2 4677666654
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.78 E-value=0.00052 Score=73.55 Aligned_cols=117 Identities=14% Similarity=0.028 Sum_probs=85.8
Q ss_pred eeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC
Q 044432 58 FTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 58 m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N 137 (584)
..+.|++.+||....+.++|+||.+.+|. ..+++|-.|++.++. .+.. .+..... .+++++++..|
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sll~q~yp--~~eIivVdDgs~D~t-----~~~~---~~~~~~~----~~v~vv~~~~n 140 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAALAQTYT--NIEVIAINDGSSDDT-----AQVL---DALLAED----PRLRVIHLAHN 140 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHcCCCC--CeEEEEEECCCCccH-----HHHH---HHHHHhC----CCEEEEEeCCC
Confidence 45899999999999999999999998887 478888888874321 2222 2232322 46888888899
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEe
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASL 198 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISL 198 (584)
.|-+.+.-.|.. ..+.+++++++.|..+.|+++..+...+.+ + +++..|.+
T Consensus 141 ~Gka~AlN~gl~-~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~---~------~~~g~v~g 191 (444)
T PRK14583 141 QGKAIALRMGAA-AARSEYLVCIDGDALLDKNAVPYLVAPLIA---N------PRTGAVTG 191 (444)
T ss_pred CCHHHHHHHHHH-hCCCCEEEEECCCCCcCHHHHHHHHHHHHh---C------CCeEEEEc
Confidence 997665544421 236899999999999999999999877643 2 46666664
No 19
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.72 E-value=0.00023 Score=64.31 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=67.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++.+|||++.|+++|+||.+..+. ..+++|.-|++... ..++++ +... .+...+.+++...+.|.
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~---------t~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 67 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSIL--PFEVIIADDGSTEE---------TKELIEEFKSQ--FPIPIKHVWQEDEGFRK 67 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCC--CCEEEEEeCCCchh---------HHHHHHHHHhh--cCCceEEEEcCCcchhH
Confidence 6789999999999999999987643 46788888886421 122332 2221 22223344444445566
Q ss_pred hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 141 QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 141 a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
+...-.|+. ....+++++|++|..++|.|+.-+...+
T Consensus 68 ~~~~n~g~~-~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 68 AKIRNKAIA-AAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHH-HhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 544333321 2357899999999999999988766554
No 20
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.70 E-value=0.00041 Score=66.13 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=71.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcc
Q 044432 60 LIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 60 I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlG 139 (584)
+.|++.+||..+.+.++|+||.+.+|..+...++| +|.+.++ .++.+++ ....+.=...++..+.+..|.|
T Consensus 3 vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiV-vD~s~D~-----t~~~~~~---~~~~~~~~~~~i~~~~~~~~~G 73 (232)
T cd06437 3 VTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQV-LDDSTDE-----TVRLARE---IVEEYAAQGVNIKHVRRADRTG 73 (232)
T ss_pred eEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEE-EECCCCc-----HHHHHHH---HHHHHhhcCCceEEEECCCCCC
Confidence 78999999999999999999999888766666655 5654321 1332222 2222211122555666666666
Q ss_pred h-hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 140 L-QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 140 L-a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
- +.+.-.|+. ....++++++.+|..+.|.++.-+...+
T Consensus 74 ~k~~a~n~g~~-~a~~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 74 YKAGALAEGMK-VAKGEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred CchHHHHHHHH-hCCCCEEEEEcCCCCCChHHHHHhhhhh
Confidence 4 333333321 2268899999999999999988866543
No 21
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=97.69 E-value=0.0005 Score=64.81 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=77.9
Q ss_pred eEEEEEEcCCCc-hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC
Q 044432 59 TLIIKVLTFNRL-NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP-~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N 137 (584)
+|.|++.+||++ +.+.+||+||.+.. ..+++|-.|++.+ ++.+.+.... ++..+.++ ...|
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~----~~eiivvdd~s~d---------~~~~~l~~~~----~~~~~~v~-~~~~ 62 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK----PLEIIVVTDGDDE---------PYLSILSQTV----KYGGIFVI-TVPH 62 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC----CCEEEEEeCCCCh---------HHHHHHHhhc----cCCcEEEE-ecCC
Confidence 367999999999 99999999999864 4578777777642 1122221112 12344444 5778
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEee
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQ 199 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY 199 (584)
.|.+.++-.|+. ....+++++|.+|..+.|.++.=+..++. + +.+.++++.
T Consensus 63 ~g~~~a~n~g~~-~a~~d~v~~lD~D~~~~~~~l~~l~~~~~----~------~~v~~v~~~ 113 (235)
T cd06434 63 PGKRRALAEGIR-HVTTDIVVLLDSDTVWPPNALPEMLKPFE----D------PKVGGVGTN 113 (235)
T ss_pred CChHHHHHHHHH-HhCCCEEEEECCCceeChhHHHHHHHhcc----C------CCEeEEcCc
Confidence 898887766642 22689999999999999998776666653 2 477777654
No 22
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=97.65 E-value=0.00035 Score=67.03 Aligned_cols=156 Identities=11% Similarity=0.138 Sum_probs=106.5
Q ss_pred cceeEeecCCchhhhhhhhCCCcccchhHH-HhhhhhhhhccccCCchHHHHHHHHHHHHHHHhhhcCcceEEEecceee
Q 044432 363 SQNHIFLGSHSDFLYDLARRGHPVIDADQF-LNDIRAYESLSLQSSDARLTKEVLVKVYVIKKCLEYRYSAWVVDANFLP 441 (584)
Q Consensus 363 ~~n~~~~~~~~~~~~dl~~~g~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~ 441 (584)
++|++++.-+.+...-|+++|.+++...-. .+... ..+..-+..+.+-...|.-+|..+|+.||+.|.+|+-.+.
T Consensus 3 ~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~ 78 (212)
T PF03407_consen 3 IDNFLVVALDEETYDALEELGPPCFYFPSDASESED----SAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVW 78 (212)
T ss_pred cccEEEEEECHHHHHHHHhcCCCeEEEecccccccc----hhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEE
Confidence 678999999999999999999996532222 11111 1123336777778889999999999999999999999999
Q ss_pred ccCCccccccCCCCceeecc---------------cceEEEEeccchhhhhhhhhHHHHHHhhhhccCCCCCCchHHHHH
Q 044432 442 FSNDLFLEPIDATSDFYYGE---------------SSKLLFVKSSSSVQKMWTKNFLYEVANLVDKVSLPRDHRNFANIM 506 (584)
Q Consensus 442 ~~~~~~~~~~~~~~d~~~~~---------------~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (584)
+.+. +.-...+..|+.+.. ..|++|+|++..+++++.+ +...........++.-|-.++
T Consensus 79 ~~dp-~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~-----w~~~~~~~~~~~DQ~~~n~~l 152 (212)
T PF03407_consen 79 LRDP-LPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLED-----WLERMAESPGCWDQQAFNELL 152 (212)
T ss_pred ecCc-HHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHH-----HHHHHHhCCCcchHHHHHHHH
Confidence 9884 422235777777653 5789999999999887665 333222222222444444444
Q ss_pred HHHHhhcccceeeeeccceeee
Q 044432 507 ANLLRQKAGVMIKRVDESKIGL 528 (584)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~ 528 (584)
.+.....+++++..+|-..++-
T Consensus 153 ~~~~~~~~~~~~~~L~~~~f~~ 174 (212)
T PF03407_consen 153 REQAARYGGLRVRFLPPSLFPN 174 (212)
T ss_pred HhcccCCcCcEEEEeCHHHeec
Confidence 3322221458999999887743
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.64 E-value=0.00044 Score=69.27 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=77.4
Q ss_pred EEEEcCCCc-hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRL-NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP-~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++.+||+. +.|.+||+||.+..+.....+++|-=|++.+.+ ++ .+.+.... .. ...+++++.+.|.|.
T Consensus 2 IIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t-----~~---~~~~~~~~-~~-~~~v~vi~~~~n~G~ 71 (299)
T cd02510 2 VIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPE-----LK---LLLEEYYK-KY-LPKVKVLRLKKREGL 71 (299)
T ss_pred EEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchH-----HH---HHHHHHHh-hc-CCcEEEEEcCCCCCH
Confidence 889999999 999999999998776543457777777764221 11 11121111 11 146889999999999
Q ss_pred hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 141 QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 141 a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
+.+.-.|.-- ...+++++|.+|+++.|.++.-|-..+..
T Consensus 72 ~~a~N~g~~~-A~gd~i~fLD~D~~~~~~wL~~ll~~l~~ 110 (299)
T cd02510 72 IRARIAGARA-ATGDVLVFLDSHCEVNVGWLEPLLARIAE 110 (299)
T ss_pred HHHHHHHHHH-ccCCEEEEEeCCcccCccHHHHHHHHHHh
Confidence 8776666321 25789999999999999999888877754
No 24
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.64 E-value=0.00062 Score=62.69 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=74.5
Q ss_pred EEEEcCCCc--hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcc
Q 044432 62 IKVLTFNRL--NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 62 IvVfaYNRP--~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlG 139 (584)
|++.+||+. +.+.+||+||.+..+. ...++|--|++.. +.+.+++ +.+.-.++ ++++.++.|.|
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~--~~eiiivdd~ss~--------d~t~~~~---~~~~~~~~-i~~i~~~~n~G 67 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLP--PDEVVLVKDGPVT--------QSLNEVL---EEFKRKLP-LKVVPLEKNRG 67 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCC--CcEEEEEECCCCc--------hhHHHHH---HHHHhcCC-eEEEEcCcccc
Confidence 678888875 6999999999997765 3466666677532 1223332 22222223 77888899999
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.+.+.-.|+. ....+++++|++|.++.|.++.-+-..+..
T Consensus 68 ~~~a~N~g~~-~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 68 LGKALNEGLK-HCTYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 9887766642 125789999999999999999988888754
No 25
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.64 E-value=0.00032 Score=64.81 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=72.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchh
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQ 141 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa 141 (584)
|++.+||..+.+.++|+||.+..|+....+++|-.|++.++ +.+ .++.+. ..+.++....|.|.+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~---------t~~---~~~~~~---~~~~~~~~~~~~gk~ 65 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDD---------TAQ---VARAAG---ATVLERHDPERRGKG 65 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCch---------HHH---HHHHcC---CeEEEeCCCCCCCHH
Confidence 67899999999999999999988866667788888886421 222 333331 123334445677776
Q ss_pred HHHhhhcc-C---CCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 142 AQWLEAWW-P---TSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 142 ~sIIEgwy-P---ts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
.++-.++. . ....+.+++++.|..+.|.|+.-|..++.
T Consensus 66 ~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~ 107 (183)
T cd06438 66 YALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFA 107 (183)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHh
Confidence 55444431 1 12578999999999999999999988874
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.62 E-value=0.0005 Score=64.33 Aligned_cols=105 Identities=11% Similarity=0.185 Sum_probs=73.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHH-HHhhccccCCCceEEEeecCCc
Q 044432 60 LIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAIL-RFLDGFEWKFGDKFVHYRTANA 138 (584)
Q Consensus 60 I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrell-k~L~gF~WP~g~vtIi~R~~Nl 138 (584)
+.|++.+||+.+.+.++|+||.+..|. ..+++|--|++.++ +.+++ ++...+ |...++++....+.
T Consensus 3 vsviip~~n~~~~l~~~L~sl~~q~~~--~~eiivVdd~s~d~---------t~~~~~~~~~~~--~~~~~~~~~~~~~~ 69 (196)
T cd02520 3 VSILKPLCGVDPNLYENLESFFQQDYP--KYEILFCVQDEDDP---------AIPVVRKLIAKY--PNVDARLLIGGEKV 69 (196)
T ss_pred eEEEEecCCCCccHHHHHHHHHhccCC--CeEEEEEeCCCcch---------HHHHHHHHHHHC--CCCcEEEEecCCcC
Confidence 689999999999999999999998775 37788877776422 12222 233333 33456666666665
Q ss_pred ch---hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 139 GL---QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 139 GL---a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
|. +.++..++. ....++++++++|..++|.++..|..++
T Consensus 70 g~~~~~~~~n~g~~-~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 70 GINPKVNNLIKGYE-EARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCHhHHHHHHHHH-hCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 64 223333421 1257899999999999999999888775
No 27
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.62 E-value=0.00079 Score=60.63 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=69.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchh
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQ 141 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa 141 (584)
|++.+|||++.+.++|+||.+..+. ..+++|--|++.+. +.+ .++.+. ..+..+...+|.|.+
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~~--~~evivvDd~s~d~---------~~~---~~~~~~---~~~~~~~~~~~~g~~ 64 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTYP--NIEYIVIDGGSTDG---------TVD---IIKKYE---DKITYWISEPDKGIY 64 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCCC--CceEEEEeCCCCcc---------HHH---HHHHhH---hhcEEEEecCCcCHH
Confidence 7889999999999999999886653 36787777776421 122 333331 124455667889997
Q ss_pred HHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 142 AQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 142 ~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.++-.++.-. ..+++++|++|..+.|.++.-+-..+
T Consensus 65 ~a~n~~~~~a-~~~~v~~ld~D~~~~~~~~~~~~~~~ 100 (202)
T cd06433 65 DAMNKGIALA-TGDIIGFLNSDDTLLPGALLAVVAAF 100 (202)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCcccCchHHHHHHHHH
Confidence 7776664222 46899999999999998877766443
No 28
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=97.60 E-value=0.00063 Score=63.76 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=73.1
Q ss_pred eEEEEEEcCCCc-hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC
Q 044432 59 TLIIKVLTFNRL-NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP-~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N 137 (584)
.+.|++.+||++ +.++++|+||.+..|..+..+|+|--|++. +++.+ .++++.=. -.+.++.+..|
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---------d~t~~---~~~~~~~~-~~~~~~~~~~~ 68 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR---------PELRA---LAAELGVE-YGYRYLTRPDN 68 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc---------hhHHH---HHHHhhcc-cCceEEEeCCC
Confidence 378999999985 679999999999888755567888766653 11223 33333111 14456666766
Q ss_pred cch-hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 138 AGL-QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 138 lGL-a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.|- +.++-.++. ....++++++.+|..+.|.++.-+...+..
T Consensus 69 ~~~~~~~~n~~~~-~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 69 RHAKAGNLNNALA-HTTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCCcHHHHHHHHH-hCCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 654 333333321 126899999999999999999888888743
No 29
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=97.60 E-value=0.00077 Score=65.08 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=75.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccC-CCceEEEeecCC
Q 044432 59 TLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWK-FGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP-~g~vtIi~R~~N 137 (584)
.+.|++.+||+.+.+.++|+||.+..|.....+++|-.|++.+ ++.++ ++.+.=+ ...+.++.+..|
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d---------~t~~i---~~~~~~~~~~~i~~~~~~~~ 69 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDE---------ETIAA---ARALRLPSIFRVVVVPPSQP 69 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCc---------hHHHH---HHHhccCCCeeEEEecCCCC
Confidence 4789999999999999999999998887555777777777531 12232 3332111 123445555677
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
.|.+.+.=.|+- .+..++++.+.+|..+.|.|+.=+...+.
T Consensus 70 ~G~~~a~n~g~~-~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 70 RTKPKACNYALA-FARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred CchHHHHHHHHH-hcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 787666555532 23578999999999999999976666553
No 30
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=97.57 E-value=0.00098 Score=64.70 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=81.4
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
.+.+.|++.+||..+.+.+++++|.+........+++|--|++.++ +.++++.+.. +.+...+.++.+..
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~---------t~~i~~~~~~-~~~~~~v~~~~~~~ 77 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDG---------TQDVVKQLQK-VYGEDRILLRPRPG 77 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCC---------HHHHHHHHHH-hcCCCcEEEEecCC
Confidence 4568999999999999999999997643322367888888887532 2333322211 12334678888899
Q ss_pred CcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 137 NAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 137 NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
|.|.+.+.-.|+.- ...++++++++|..+.|.++.-+-..+..
T Consensus 78 n~G~~~a~n~g~~~-a~g~~i~~lD~D~~~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 78 KLGLGTAYIHGLKH-ASGDFVVIMDADLSHHPKYLPSFIKKQRE 120 (243)
T ss_pred CCCHHHHHHHHHHH-cCCCEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 99998887777532 24679999999999999999877766543
No 31
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.54 E-value=0.00054 Score=57.41 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=68.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchh
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQ 141 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa 141 (584)
|++++|||++.+.++|+|+.+..+ ...+++|..|++... ..+ .+.+.... ......+.+..+.|.+
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~--~~~~i~i~~~~~~~~-----~~~---~~~~~~~~----~~~~~~~~~~~~~g~~ 66 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTY--PNFEVIVVDDGSTDG-----TLE---ILEEYAKK----DPRVIRVINEENQGLA 66 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCc--cceEEEEEeCCCCcc-----HHH---HHHHHHhc----CCCeEEEEecCCCChH
Confidence 578999999999999999999876 356778777765321 111 11112111 1346677788888887
Q ss_pred HHHhhhccCCCCCceEEEEcCCceeChhHHHHH
Q 044432 142 AQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFL 174 (584)
Q Consensus 142 ~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ym 174 (584)
.++-.+.. ....+.++++++|..+.|.++..+
T Consensus 67 ~~~~~~~~-~~~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 67 AARNAGLK-AARGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHH-HhcCCEEEEECCCCccCccHHHHH
Confidence 66655521 115789999999999999999887
No 32
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.50 E-value=0.0021 Score=67.41 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=72.7
Q ss_pred eeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHH-HHhhccccCCCceEEEeecC
Q 044432 58 FTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAIL-RFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 58 m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrell-k~L~gF~WP~g~vtIi~R~~ 136 (584)
..+.|++.+||..+.+.++|+||.+.+|+. .++.|-.|++.+ .+.+++ ++.+.+ |...+.++...+
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D---------~t~~iv~~~~~~~--p~~~i~~v~~~~ 107 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPG--FQMLFGVQDPDD---------PALAVVRRLRADF--PDADIDLVIDAR 107 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCC--eEEEEEeCCCCC---------cHHHHHHHHHHhC--CCCceEEEECCC
Confidence 348899999999999999999999999974 566664444321 112222 233433 444677777677
Q ss_pred Ccchh---HHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 137 NAGLQ---AQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 137 NlGLa---~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
+.|.. .+...+ ....+++.++++++|+.++|+|+.-+...+
T Consensus 108 ~~G~~~K~~~l~~~-~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~ 151 (373)
T TIGR03472 108 RHGPNRKVSNLINM-LPHARHDILVIADSDISVGPDYLRQVVAPL 151 (373)
T ss_pred CCCCChHHHHHHHH-HHhccCCEEEEECCCCCcChhHHHHHHHHh
Confidence 76641 222222 123478999999999999999998877665
No 33
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=97.50 E-value=0.002 Score=68.96 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=101.3
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhcccc--------C---
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEW--------K--- 125 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~W--------P--- 125 (584)
+.++.|+|-++|||+-|+.|++||++|..- .++-|++.-|.-. .++-+++++++. |
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I-~~~llifSHd~~~------------~ein~~v~~I~Fc~v~QIf~P~S~ 96 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGI-EEALLIFSHDFYS------------EEINDLVQSIDFCRVMQIFYPYSI 96 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCc-cceEEEEeccCCh------------HHHHHHHHhCCcceeEEEecccch
Confidence 355789999999999999999999999754 3555777777753 122223333322 1
Q ss_pred ---------------------------------CCceEEEeecCCcch--------hHHHhhhccCCCC-CceEEEEcCC
Q 044432 126 ---------------------------------FGDKFVHYRTANAGL--------QAQWLEAWWPTSD-HEFAFVVEDD 163 (584)
Q Consensus 126 ---------------------------------~g~vtIi~R~~NlGL--------a~sIIEgwyPts~-~e~VIVLEDD 163 (584)
+....=++|+.+.-- ++.|.+++..+.. .+.||+||+|
T Consensus 97 ql~p~~FPG~dP~DCpr~i~k~~a~~~~C~na~~pD~yGhyRea~~tq~KHHWWWk~n~Vf~~l~~~~~~~g~v~fLEED 176 (356)
T PF05060_consen 97 QLYPNEFPGQDPNDCPRDIKKEDALKLGCNNAEYPDSYGHYREAKFTQIKHHWWWKLNFVFDGLEETRNHNGWVLFLEED 176 (356)
T ss_pred hhCCCCCCCCCcccccccccHhHHHhccCCCCCCccccCCcccccchhhhHHHHHHHHHHHHhhhhhccCCceEEEEecc
Confidence 111222344444322 6667777655554 5689999999
Q ss_pred ceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecCCCCCCCCCCcccCCCCCCceeeecCCcchhhcCccchHHHHH
Q 044432 164 LEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRPRFVPGKHGNKIHLDNGTQLFLYQLVGTWGQLLFPQPWKEFRL 243 (584)
Q Consensus 164 LeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P~f~~~k~~~~i~~d~~~d~FL~Q~PsSWGwatw~d~WkeF~~ 243 (584)
-.|+|+||+-++.+... +.+ .-..-.|.+...|............+. ..++.. ....=|-|+=++.|+..+.
T Consensus 177 hyv~pD~l~~l~~~~~~-~~~--~cp~c~~~sLG~y~~~~~~~~~~~~v~----~~~W~S-skHNmGmAfNRs~W~kI~~ 248 (356)
T PF05060_consen 177 HYVAPDFLHVLRLMIKL-KKS--ECPDCDILSLGTYDKSNGYQSDPNKVE----VTPWIS-SKHNMGMAFNRSTWNKIKS 248 (356)
T ss_pred cccchhHHHHHHHHHHH-hhh--cCCCCCEEeccCCccccccccccceee----eecccc-ccccceeEecHHHHHHHHH
Confidence 99999999999988754 322 112234555555542111111111111 112332 2357789999999999985
Q ss_pred HHH
Q 044432 244 WYD 246 (584)
Q Consensus 244 w~~ 246 (584)
--+
T Consensus 249 ca~ 251 (356)
T PF05060_consen 249 CAD 251 (356)
T ss_pred HHH
Confidence 443
No 34
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.40 E-value=0.0023 Score=60.79 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=70.5
Q ss_pred EEEEcCCCc-hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRL-NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP-~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++.+||++ +.+.++|+||.+.+|. ..+++|--|++.+.+ ..+. +.+..+.. ..+++++....|.|.
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~--~~eiiVvdd~s~D~t----~~~~---i~~~~~~~---~~~i~~i~~~~~~G~ 69 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYP--NFEVIVIDNNTKDEA----LWKP---VEAHCAQL---GERFRFFHVEPLPGA 69 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCchh----HHHH---HHHHHHHh---CCcEEEEEcCCCCCC
Confidence 789999986 7899999999998775 356666666653211 1111 22233332 135667777777776
Q ss_pred -hHHHhhhcc-CCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 141 -QAQWLEAWW-PTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 141 -a~sIIEgwy-Pts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
+.++-.++- ...+.++++++.+|..++|.++..|...+
T Consensus 70 ~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (236)
T cd06435 70 KAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIF 109 (236)
T ss_pred chHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHh
Confidence 554555532 12247899999999999999999887765
No 35
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=97.33 E-value=0.0021 Score=60.32 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=72.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeec---CCc
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRT---ANA 138 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~---~Nl 138 (584)
|++.+||..+.+.+||+||.+.. ...+++|--|++.+ .+.++++ . .. ....++++++. .|.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~---~~~eIivvdd~S~D---------~t~~~~~-~-~~--~~~~v~~i~~~~~~~~~ 64 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK---PNFLVLVIDDASDD---------DTAGIVR-L-AI--TDSRVHLLRRHLPNART 64 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC---CCeEEEEEECCCCc---------CHHHHHh-h-ee--cCCcEEEEeccCCcCCC
Confidence 67899999999999999999865 35667777777642 1233333 1 11 12357777653 466
Q ss_pred chhHHHhhhccC-C--------C-CCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEee
Q 044432 139 GLQAQWLEAWWP-T--------S-DHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQ 199 (584)
Q Consensus 139 GLa~sIIEgwyP-t--------s-~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY 199 (584)
|-+.+.-.++.- . + ..+.+++++.|..+.|.++..+..++. + |++.++.+.
T Consensus 65 Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~----~------~~v~~v~~~ 125 (191)
T cd06436 65 GKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS----D------PRVAGTQSR 125 (191)
T ss_pred CHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc----C------CceEEEeee
Confidence 765444333211 1 0 246899999999999999998776541 2 467666543
No 36
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.23 E-value=0.0036 Score=59.11 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=66.0
Q ss_pred EEEEcCCCc-hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLTFNRL-NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfaYNRP-~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
+++++||+. +.+.+||+||.+.. ..++| +|.....+ . ....++ +...++++..+.|.|.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~-----~~iiv-vDn~s~~~-----~---~~~~~~------~~~~i~~i~~~~n~G~ 60 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQV-----DKVVV-VDNSSGND-----I---ELRLRL------NSEKIELIHLGENLGI 60 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccC-----CEEEE-EeCCCCcc-----H---HHHhhc------cCCcEEEEECCCceeh
Confidence 367899999 99999999999852 23444 55432111 1 111111 3357888999999998
Q ss_pred hHHHhhhcc-CCC-CCceEEEEcCCceeChhHHHHHH
Q 044432 141 QAQWLEAWW-PTS-DHEFAFVVEDDLEVSPLFYKFLR 175 (584)
Q Consensus 141 a~sIIEgwy-Pts-~~e~VIVLEDDLeVSP~Fy~Ymn 175 (584)
+.+.=.|+- ... +++++++|.||..+.|.++.-|.
T Consensus 61 ~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 61 AKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred HHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHH
Confidence 776666642 121 57999999999999999999985
No 37
>PRK10073 putative glycosyl transferase; Provisional
Probab=97.22 E-value=0.0029 Score=65.72 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCC
Q 044432 59 TLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~N 137 (584)
.+.|++.+||+.+.+.+||+||.+..|. ..+++|--|++.+++ .++++ +.+.. ..+++++ .+|
T Consensus 7 ~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t---------~~i~~~~~~~~----~~i~vi~-~~n 70 (328)
T PRK10073 7 KLSIIIPLYNAGKDFRAFMESLIAQTWT--ALEIIIVNDGSTDNS---------VEIAKHYAENY----PHVRLLH-QAN 70 (328)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhCCCC--CeEEEEEeCCCCccH---------HHHHHHHHhhC----CCEEEEE-CCC
Confidence 4899999999999999999999987763 578888889875322 23322 22322 4677765 569
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
.|++.+.=.|.- ....+++++|++|-.+.|.++.-+-..+.
T Consensus 71 ~G~~~arN~gl~-~a~g~yi~flD~DD~~~p~~l~~l~~~~~ 111 (328)
T PRK10073 71 AGVSVARNTGLA-VATGKYVAFPDADDVVYPTMYETLMTMAL 111 (328)
T ss_pred CChHHHHHHHHH-hCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 999766555532 12568999999999999999988777654
No 38
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.20 E-value=0.015 Score=60.77 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=82.9
Q ss_pred CCceeEEEEEEcCCCchHHHHHHHHHhcCCC------CCCceeEEEEecCCCCCcCCCcchhhHHHHH-HHhhccccCCC
Q 044432 55 SSNFTLIIKVLTFNRLNSLSRCLHSLSAADY------LTDRVHLHVYVDHSAPLADQSSSESDSRAIL-RFLDGFEWKFG 127 (584)
Q Consensus 55 ~~~m~I~IvVfaYNRP~sLkRLL~SL~~AdY------~gd~v~L~IflD~pk~~s~~~~kVdevrell-k~L~gF~WP~g 127 (584)
.....+.|++.+||..+.+.++|+++.+... .....+++|--|++++++ .+++ ++.+...=|..
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T---------~~i~~~~~~~~~~~~~ 137 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKT---------LKVAKDFWRQNINPNI 137 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCch---------HHHHHHHHHhcCCCCC
Confidence 3466799999999999999999999876321 123567888888886432 2222 22222100223
Q ss_pred ceEEEeecCCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 128 DKFVHYRTANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 128 ~vtIi~R~~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.+.++...+|.|.+.++-.|+. .+..+.+++++.|....|..+.-+-..+..
T Consensus 138 ~i~vi~~~~N~G~~~A~~~Gi~-~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 138 DIRLLSLLRNKGKGGAVRIGML-ASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred cEEEEEcCCCCChHHHHHHHHH-HccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5888899999999888887753 225689999999999999998888777754
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.18 E-value=0.0016 Score=59.42 Aligned_cols=103 Identities=19% Similarity=0.089 Sum_probs=72.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCC-CCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCCcc
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYL-TDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~-gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~NlG 139 (584)
|++.+||+++.+.++|++|.+.... ....++.|.-|++.++ +.++++ +.... .+++++....|.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~---------t~~~~~~~~~~~----~~i~~i~~~~n~G 67 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDR---------TLEILRELAARD----PRVKVIRLSRNFG 67 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCcc---------HHHHHHHHHhhC----CCEEEEEecCCCC
Confidence 5789999999999999999764321 2345788877776422 122222 22222 3678888889999
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.+.++-.++- ....+.++++++|....|.++.=+..++
T Consensus 68 ~~~a~n~g~~-~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 105 (181)
T cd04187 68 QQAALLAGLD-HARGDAVITMDADLQDPPELIPEMLAKW 105 (181)
T ss_pred cHHHHHHHHH-hcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8777666632 2246899999999999999887777763
No 40
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0067 Score=50.72 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=70.1
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
.|.+.|++.+||+...+.++|+|+.+..+.. .++.|.-|++.+.+ ++.+.+ +.... ..+.......
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t-----~~~~~~---~~~~~----~~~~~~~~~~ 67 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKD--FEIIVVDDGSTDGT-----TEIAIE---YGAKD----VRVIRLINER 67 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcc--eEEEEEeCCCCCCh-----HHHHHH---Hhhhc----ceEEEeeccc
Confidence 4678999999999999999999999987653 55777777765322 221122 21111 3566677789
Q ss_pred CcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHH
Q 044432 137 NAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKF 173 (584)
Q Consensus 137 NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Y 173 (584)
|.|.+.+.-.++--. ..+.+..++.|.. .|..+..
T Consensus 68 ~~g~~~~~~~~~~~~-~~~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 68 NGGLGAARNAGLEYA-RGDYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred CCChHHHHHhhHHhc-cCCEEEEEccCCC-CCHHHHH
Confidence 999988877775212 2278888888888 7777666
No 41
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=97.11 E-value=0.0017 Score=60.97 Aligned_cols=105 Identities=12% Similarity=0.005 Sum_probs=75.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCC--CCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeecCCc
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADY--LTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRTANA 138 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY--~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~~Nl 138 (584)
|++.+||..+.+.++|++|.+..+ .....+++|--|++.+. +.++++ +.... |. .+++++...|.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~---------t~~~~~~~~~~~--~~-~i~~i~~~~n~ 68 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDG---------TAEVARKLARKN--PA-LIRVLTLPKNR 68 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCc---------hHHHHHHHHHhC--CC-cEEEEEcccCC
Confidence 678999999999999999988533 12346788877776432 233332 22322 21 25788889999
Q ss_pred chhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 139 GLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 139 GLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
|.+.++..|+.-. ..++++++++|....|.++.-+-..+.
T Consensus 69 G~~~a~~~g~~~a-~gd~i~~ld~D~~~~~~~l~~l~~~~~ 108 (211)
T cd04188 69 GKGGAVRAGMLAA-RGDYILFADADLATPFEELEKLEEALK 108 (211)
T ss_pred CcHHHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999888886433 358999999999999999988777753
No 42
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.11 E-value=0.0095 Score=62.83 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=72.2
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHH-HhhccccCCCceEEEeec
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILR-FLDGFEWKFGDKFVHYRT 135 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk-~L~gF~WP~g~vtIi~R~ 135 (584)
...+.|++.+||..+.+.+||+||.+.+|.. ..+++|--|++.++ +.++++ +.+.+. .+..+++++.+
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~---------T~~i~~~~~~~~~-~~~~i~vi~~~ 107 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQDYPG-KLHVILVDDHSTDG---------TADIARAAARAYG-RGDRLTVVSGQ 107 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCc---------HHHHHHHHHHhcC-CCCcEEEecCC
Confidence 3458999999999999999999999988874 46788877776422 223322 222231 01256666533
Q ss_pred C----CcchhHHHhhhccC-CC---CCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 136 A----NAGLQAQWLEAWWP-TS---DHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 136 ~----NlGLa~sIIEgwyP-ts---~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
. ..|-..+.-.|..- .+ ..+.++++++|+++.|+++.=+...+.+
T Consensus 108 ~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~ 160 (384)
T TIGR03469 108 PLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARA 160 (384)
T ss_pred CCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 2 23432222222211 11 2789999999999999998877776643
No 43
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.11 E-value=0.0058 Score=62.54 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=79.6
Q ss_pred eeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC
Q 044432 58 FTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 58 m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N 137 (584)
..+.|++.+||+++.+.++|+|+.+..|. ..+|+|--|++.. .+. +.++++.+.. ..+++++.+.|
T Consensus 5 p~VSVIip~yN~~~~l~~~l~Svl~Qt~~--~~EiIVVDDgS~~-------~~~---~~~~~~~~~~--~ri~~i~~~~n 70 (279)
T PRK10018 5 PLISIYMPTWNRQQLAIRAIKSVLRQDYS--NWEMIIVDDCSTS-------WEQ---LQQYVTALND--PRITYIHNDIN 70 (279)
T ss_pred CEEEEEEEeCCCHHHHHHHHHHHHhCCCC--CeEEEEEECCCCC-------HHH---HHHHHHHcCC--CCEEEEECCCC
Confidence 35899999999999999999999987764 5788888888641 222 2344454433 47888888999
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.|.+.+.-.|.- ....+++++|++|-+..|..+.=+-..+..
T Consensus 71 ~G~~~a~N~gi~-~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 71 SGACAVRNQAIM-LAQGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCHHHHHHHHHH-HcCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 999765555521 125789999999999999998766555543
No 44
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.08 E-value=0.0038 Score=58.20 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=62.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcc
Q 044432 60 LIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 60 I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlG 139 (584)
+.|++.+||+++.+.++|+||.+..+ ...+++|--|++.++. .+ .++. ..+.++ ..+.|
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~--~~~evivvdd~s~d~~---------~~---~~~~-----~~~~~~--~~~~g 59 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNP--LPLEIIVVDGGSTDGT---------VA---IARS-----AGVVVI--SSPKG 59 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccC--CCcEEEEEeCCCCccH---------HH---HHhc-----CCeEEE--eCCcC
Confidence 46889999999999999999998766 4567877766653211 12 2222 133333 34455
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHH
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFL 174 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ym 174 (584)
.+...-.++- ....++++++++|.++.|.++.=|
T Consensus 60 ~~~a~n~g~~-~a~~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 60 RARQMNAGAA-AARGDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred HHHHHHHHHH-hccCCEEEEEcCCCCCChhHHHHH
Confidence 5444433421 124789999999999999888877
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.96 E-value=0.0073 Score=61.47 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=78.2
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
.+.+.|++++|||.+.+..||++|.++.+.. ..+|.+|...... ..+ ..+ ..+ .+.+++++-..
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~---~~iv~vDn~s~d~----~~~----~~~--~~~---~~~v~~i~~~~ 65 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPD---DVIVVVDNGSTDG----SLE----ALK--ARF---FPNVRLIENGE 65 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCC---cEEEEccCCCCCC----CHH----HHH--hhc---CCcEEEEEcCC
Confidence 3568999999999999999999999988763 2223455443211 121 111 111 37899999999
Q ss_pred CcchhHHHhhhc-cCCCC-CceEEEEcCCceeChhHHHHHHHHHHhhcc
Q 044432 137 NAGLQAQWLEAW-WPTSD-HEFAFVVEDDLEVSPLFYKFLRGLIVNYYY 183 (584)
Q Consensus 137 NlGLa~sIIEgw-yPts~-~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Y 183 (584)
|+|-+...=.|. +.... ++++++|-||+++.|.++.=|-.+++++..
T Consensus 66 NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~ 114 (305)
T COG1216 66 NLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPA 114 (305)
T ss_pred CccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCC
Confidence 999976655553 22222 338999999999999999888888766543
No 46
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.87 E-value=0.0083 Score=58.06 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=67.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcc
Q 044432 60 LIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAG 139 (584)
Q Consensus 60 I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlG 139 (584)
|.|++.+||+.+.+.+||+||.... .+++|--|++.+ .+.+ .++.+ .+.+++. .+.|
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~~-----~eiivvD~gStD---------~t~~---i~~~~-----~~~v~~~-~~~g 58 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWAV-----DEIIVVDSGSTD---------RTVE---IAKEY-----GAKVYQR-WWDG 58 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhccc-----CEEEEEeCCCCc---------cHHH---HHHHc-----CCEEEEC-CCCC
Confidence 6789999999999999999998641 156776666532 2233 33333 3456665 8888
Q ss_pred hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 140 LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 140 La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.+.+.=.+.- ....+.+++|++|..++|.++.-+...+..
T Consensus 59 ~~~~~n~~~~-~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 59 FGAQRNFALE-LATNDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred hHHHHHHHHH-hCCCCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 7554433321 124679999999999999999988887644
No 47
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.87 E-value=0.021 Score=65.58 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=76.2
Q ss_pred eEEEEEEcCCCchHH-HHHHHHHhcCCCCCCceeEEEEecCCCCCcC-CCcch-h----hHHHHHHHhhccccCCCceEE
Q 044432 59 TLIIKVLTFNRLNSL-SRCLHSLSAADYLTDRVHLHVYVDHSAPLAD-QSSSE-S----DSRAILRFLDGFEWKFGDKFV 131 (584)
Q Consensus 59 ~I~IvVfaYNRP~sL-kRLL~SL~~AdY~gd~v~L~IflD~pk~~s~-~~~kV-d----evrellk~L~gF~WP~g~vtI 131 (584)
++.|++.+||.+.++ +++|+++.+.+|+.+..+++|--|++.+++. +++.+ . ...++.++.+.. .+..
T Consensus 132 ~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~-----~v~y 206 (713)
T TIGR03030 132 TVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL-----GVNY 206 (713)
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc-----CcEE
Confidence 588999999998766 6799999999999888899999999754321 11101 0 112333343433 5667
Q ss_pred EeecCCcch-hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 132 HYRTANAGL-QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 132 i~R~~NlGL-a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
+.|+.|.|- +.++=.+.. ..+.+++++++.|.++.|+|+.-+-..+
T Consensus 207 i~r~~n~~~KAgnLN~al~-~a~gd~Il~lDAD~v~~pd~L~~~v~~f 253 (713)
T TIGR03030 207 ITRPRNVHAKAGNINNALK-HTDGELILIFDADHVPTRDFLQRTVGWF 253 (713)
T ss_pred EECCCCCCCChHHHHHHHH-hcCCCEEEEECCCCCcChhHHHHHHHHH
Confidence 778887643 333323321 1256899999999999999987665544
No 48
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=96.65 E-value=0.027 Score=56.90 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=81.0
Q ss_pred EEEEEcCCCchH-HHHHHHHHhc----CCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccC-CCceEEEee
Q 044432 61 IIKVLTFNRLNS-LSRCLHSLSA----ADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWK-FGDKFVHYR 134 (584)
Q Consensus 61 ~IvVfaYNRP~s-LkRLL~SL~~----AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP-~g~vtIi~R 134 (584)
.|++.+||-+.. +..+|++..+ .+|. ...+++|--|+..++. .+.+-..+.+..+.+ | .-.+.+++|
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~-~~~eI~vldD~~d~~~----~~~~~~~~~~l~~~~--~~~~~v~~~~r 74 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLA-DHFDFFILSDTRDPDI----WLAEEAAWLDLCEEL--GAQGRIYYRRR 74 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCCc-CceEEEEECCCCChHH----HHHHHHHHHHHHHHh--CCCCcEEEEEc
Confidence 588999998876 7777877654 3442 2467766666643211 121112223333333 3 236889999
Q ss_pred cCCcchhHHHhhhccCC--CCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEE
Q 044432 135 TANAGLQAQWLEAWWPT--SDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGAS 197 (584)
Q Consensus 135 ~~NlGLa~sIIEgwyPt--s~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GIS 197 (584)
+.|.|.....+..+... +.++++++++-|..+.|.|+..+-..+.. + |+|..|.
T Consensus 75 ~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~---~------~~vg~vq 130 (254)
T cd04191 75 RENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA---N------PRAGIIQ 130 (254)
T ss_pred CCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh---C------CCEEEEe
Confidence 99999977666665432 47899999999999999999998887643 3 5777775
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=96.61 E-value=0.02 Score=54.11 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=68.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEee----cCC
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYR----TAN 137 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R----~~N 137 (584)
|++.+||+.+.|.+||+||.+..|. ...+++|--|++.+.+ .+. +.++...... ..++++.+ ..|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t-----~~i---~~~~~~~~~~--~~~~~~~~~~~~~~~ 69 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFE-GTLELSVFNDASTDKS-----AEI---IEKWRKKLED--SGVIVLVGSHNSPSP 69 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH-----HHH---HHHHHHhCcc--cCeEEEEecccCCCC
Confidence 6789999999999999999987765 3578888888864321 111 1223333322 24444432 245
Q ss_pred cchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 138 AGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 138 lGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.|.+.+.-.|+- .+..+.+++|++|..+.|.++.-+-.++
T Consensus 70 ~G~~~a~N~g~~-~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 70 KGVGYAKNQAIA-QSSGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred ccHHHHHHHHHH-hcCCCEEEEECCCccCChhHHHHHHHHH
Confidence 677554434421 2357899999999999998887654444
No 50
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=96.57 E-value=0.039 Score=65.11 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=74.2
Q ss_pred eeEEEEEEcCCCchH-HHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 58 FTLIIKVLTFNRLNS-LSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 58 m~I~IvVfaYNRP~s-LkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
..+.|++.+||.+.. +++++.++.+-+|+.+..+++|--|++++ ++++ +++.+ .+++++|+.
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D---------~t~~---la~~~-----~v~yI~R~~ 322 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE---------EFRQ---FAQEV-----GVKYIARPT 322 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh---------HHHH---HHHHC-----CcEEEEeCC
Confidence 358999999999854 57899999888999888899999998752 2233 33443 466777877
Q ss_pred Ccc-hhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 137 NAG-LQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 137 NlG-La~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
|.| -+.++=.+.- ..+.+++++++.|.++.|+|+.-+....
T Consensus 323 n~~gKAGnLN~aL~-~a~GEyIavlDAD~ip~pdfL~~~V~~f 364 (852)
T PRK11498 323 HEHAKAGNINNALK-YAKGEFVAIFDCDHVPTRSFLQMTMGWF 364 (852)
T ss_pred CCcchHHHHHHHHH-hCCCCEEEEECCCCCCChHHHHHHHHHH
Confidence 654 3433323321 1367899999999999999998766543
No 51
>PRK10063 putative glycosyl transferase; Provisional
Probab=96.41 E-value=0.027 Score=56.19 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=69.0
Q ss_pred eeEEEEEEcCCCchHHHHHHHHHhcC-CCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 58 FTLIIKVLTFNRLNSLSRCLHSLSAA-DYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 58 m~I~IvVfaYNRP~sLkRLL~SL~~A-dY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
|.+.|++++||..+.+.++|+||.+. .......+++|-=|++.+. +.+ .++.+.=. ..++++. ..
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~---------t~~---i~~~~~~~-~~i~~i~-~~ 66 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG---------TRE---FLENLNGI-FNLRFVS-EP 66 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCccc---------HHH---HHHHhccc-CCEEEEE-CC
Confidence 46889999999999999999999752 2223456777777776421 223 33333100 1355665 45
Q ss_pred CcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHH
Q 044432 137 NAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGL 177 (584)
Q Consensus 137 NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~A 177 (584)
|.|.+.+.=.|.. ....+.++.|.+|-...|..+..+.+.
T Consensus 67 ~~G~~~A~N~Gi~-~a~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 67 DNGIYDAMNKGIA-MAQGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CCCHHHHHHHHHH-HcCCCEEEEEeCCcccCcCHHHHHHHH
Confidence 7799877666632 125689999997777788877776654
No 52
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=96.35 E-value=0.041 Score=57.28 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=78.3
Q ss_pred CceeEEEEEEcCCCchHHHHHHHHHhcCC-CCCCceeEEEEecCCCCCcCCCcchhhHHHHHHH-hhccccCCCceEEEe
Q 044432 56 SNFTLIIKVLTFNRLNSLSRCLHSLSAAD-YLTDRVHLHVYVDHSAPLADQSSSESDSRAILRF-LDGFEWKFGDKFVHY 133 (584)
Q Consensus 56 ~~m~I~IvVfaYNRP~sLkRLL~SL~~Ad-Y~gd~v~L~IflD~pk~~s~~~~kVdevrellk~-L~gF~WP~g~vtIi~ 133 (584)
+...+.|++.+||..+++.+++++|.++- ....+.++.|--|++.+.+ .++++- .+.. ..++.++.
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T---------~~il~~~~~~~---~~~v~~i~ 71 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNS---------AEMLVEAAQAP---DSHIVAIL 71 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcH---------HHHHHHHHhhc---CCcEEEEE
Confidence 34569999999999999999999886531 1223567877778775322 233222 2211 13566666
Q ss_pred ecCCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 134 RTANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 134 R~~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
...|.|.+.++..|+- ....+.++++++|....|..+.-|-+++.
T Consensus 72 ~~~n~G~~~A~~~G~~-~A~gd~vv~~DaD~q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 72 LNRNYGQHSAIMAGFS-HVTGDLIITLDADLQNPPEEIPRLVAKAD 116 (325)
T ss_pred eCCCCCHHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 7889999888888752 22578999999999999999988888774
No 53
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=96.31 E-value=0.045 Score=63.24 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=86.3
Q ss_pred CCCceeEEEEEEcCCCc-----hHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCc
Q 044432 54 HSSNFTLIIKVLTFNRL-----NSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGD 128 (584)
Q Consensus 54 ~~~~m~I~IvVfaYNRP-----~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~ 128 (584)
.+....+.|++.+||-. +.++.+++||.+.+|. +..+++|-.|+..++. ...+ -.++.+..+.+. +.++
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~---~~~e-~~~~~~L~~~~~-~~~~ 193 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDI---AAAE-EAAWLELRAELG-GEGR 193 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhH---HHHH-HHHHHHHHHhcC-CCCc
Confidence 34466789999999976 3589999999988875 4788899999875332 1111 122333333331 2357
Q ss_pred eEEEeecCCcchhH-HHhhhcc-CCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEE
Q 044432 129 KFVHYRTANAGLQA-QWLEAWW-PTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGAS 197 (584)
Q Consensus 129 vtIi~R~~NlGLa~-sIIEgwy-Pts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GIS 197 (584)
+.+++|..|.|=+. ++-+... -..++++++||+-|..++|+|+.-|-..+.. + |++.-|.
T Consensus 194 i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~---d------P~vGlVQ 255 (691)
T PRK05454 194 IFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA---N------PRAGLIQ 255 (691)
T ss_pred EEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh---C------cCEEEEe
Confidence 88888999887533 3322211 1247899999999999999999888876533 3 4666664
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=96.25 E-value=0.025 Score=56.08 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=66.2
Q ss_pred EcCCC-chHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchhHH
Q 044432 65 LTFNR-LNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQAQ 143 (584)
Q Consensus 65 faYNR-P~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa~s 143 (584)
++||| .+.|+++|+||.+..+ +++|.=+++.++ + .+.+.++.+ ..+++++..+|.|.+.+
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~~-----~iiVVDN~S~~~-------~---~~~~~~~~~----~~i~~i~~~~N~G~a~a 61 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQVD-----RIIAVDNSPHSD-------Q---PLKNARLRG----QKIALIHLGDNQGIAGA 61 (281)
T ss_pred CccCccHHHHHHHHHHHHhcCC-----EEEEEECcCCCc-------H---hHHHHhccC----CCeEEEECCCCcchHHH
Confidence 48998 5899999999998532 344444443211 1 222233433 47889999999999877
Q ss_pred Hhhhc-cCC-CCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 144 WLEAW-WPT-SDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 144 IIEgw-yPt-s~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.=.|. +.. ...+++++|.||..+.|.++.-+..++..
T Consensus 62 ~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 100 (281)
T TIGR01556 62 QNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSA 100 (281)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 66654 211 25789999999999999988877766543
No 55
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.12 E-value=0.038 Score=54.27 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=71.2
Q ss_pred EEEEcCCCc-hHHHHHHHHHhcCCCC--------CCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEE
Q 044432 62 IKVLTFNRL-NSLSRCLHSLSAADYL--------TDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVH 132 (584)
Q Consensus 62 IvVfaYNRP-~sLkRLL~SL~~AdY~--------gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi 132 (584)
|++.+||.+ ..+.++|+||.+.+|. .+..+++|-.|+..+.+ ..|. .. ..|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~~--~gk~---~~-------~~~-------- 60 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKN--RGKR---DS-------QLW-------- 60 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccccc--Ccch---HH-------HHH--------
Confidence 678999996 7899999999999998 66789999999974210 0000 00 000
Q ss_pred eecCCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecC
Q 044432 133 YRTANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRP 201 (584)
Q Consensus 133 ~R~~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P 201 (584)
++ +.+.++ ......+.+++++.|..+.|+++..|...+.. + |++.+|.+..-
T Consensus 61 ------~~-~~~~~~-~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~---~------p~vg~v~g~~~ 112 (244)
T cd04190 61 ------FF-NYFCRV-LFPDDPEFILLVDADTKFDPDSIVQLYKAMDK---D------PEIGGVCGEIH 112 (244)
T ss_pred ------HH-HHHHHH-hhcCCCCEEEEECCCCcCCHhHHHHHHHHHHh---C------CCEEEEEeeeE
Confidence 00 111122 01236899999999999999999999888743 3 58888888753
No 56
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.23 Score=51.80 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=77.4
Q ss_pred eeEEEEEEcCCCch-HHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHh-hccccCCCceEEEee-
Q 044432 58 FTLIIKVLTFNRLN-SLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFL-DGFEWKFGDKFVHYR- 134 (584)
Q Consensus 58 m~I~IvVfaYNRP~-sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L-~gF~WP~g~vtIi~R- 134 (584)
..+.|++.+||-+. -++++++|+.+.+|+. .+++|-.|++. |++.++++.. ..+ + ..+.++..
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~---------d~~~~~~~~~~~~~--~-~~~~~~~~~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGST---------DETYEILEELGAEY--G-PNFRVIYPE 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCC---------hhHHHHHHHHHhhc--C-cceEEEecc
Confidence 45789999999888 9999999999999975 67788888664 2223333322 222 1 24444433
Q ss_pred cCCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 135 TANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 135 ~~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
..|.|-+.+...+..-. +.+.+++++-|..+.|+|+..|...+
T Consensus 120 ~~~~gK~~al~~~l~~~-~~d~V~~~DaD~~~~~d~l~~~~~~f 162 (439)
T COG1215 120 KKNGGKAGALNNGLKRA-KGDVVVILDADTVPEPDALRELVSPF 162 (439)
T ss_pred ccCccchHHHHHHHhhc-CCCEEEEEcCCCCCChhHHHHHHhhh
Confidence 57888788887774323 48999999999999999999888775
No 57
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=95.28 E-value=0.11 Score=53.86 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=69.6
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccc--cCCCceEEEee
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFE--WKFGDKFVHYR 134 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~--WP~g~vtIi~R 134 (584)
...+.|++.+||..+++.++|+||.+..+.....+++|--|++.+ .+.++ ++.+. .-.....+...
T Consensus 30 ~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD---------~T~~i---a~~~~~~v~~~~~~~~~~ 97 (306)
T PRK13915 30 GRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTD---------ATAER---AAAAGARVVSREEILPEL 97 (306)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCcc---------HHHHH---HHHhcchhhcchhhhhcc
Confidence 456899999999999999999999975431223467776666542 12222 22221 00001112223
Q ss_pred cCCcchhHHHhhhccCCCCCceEEEEcCCce-eChhHHHHHHHHH
Q 044432 135 TANAGLQAQWLEAWWPTSDHEFAFVVEDDLE-VSPLFYKFLRGLI 178 (584)
Q Consensus 135 ~~NlGLa~sIIEgwyPts~~e~VIVLEDDLe-VSP~Fy~Ymn~AL 178 (584)
..|.|.+.++-.|+. ....+.+++++.|+. ..|.++.=+-..+
T Consensus 98 ~~n~Gkg~A~~~g~~-~a~gd~vv~lDaD~~~~~p~~l~~l~~~l 141 (306)
T PRK13915 98 PPRPGKGEALWRSLA-ATTGDIVVFVDADLINFDPMFVPGLLGPL 141 (306)
T ss_pred ccCCCHHHHHHHHHH-hcCCCEEEEEeCccccCCHHHHHHHHHHH
Confidence 678898887767643 225789999999996 8998876555554
No 58
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.46 Score=51.42 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=112.3
Q ss_pred CCCceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEe
Q 044432 54 HSSNFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHY 133 (584)
Q Consensus 54 ~~~~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~ 133 (584)
+..+-++.+++-+.|||.-|+-|++||+++.-- +++-|++.-|+- +++..+ .+++.+. +.|.-+.
T Consensus 113 dla~~~~vlV~qVHnRp~Ylr~lveSlrk~kGI-~~tLlifSHD~~---------~~eiN~---~I~~i~F--c~V~QiF 177 (455)
T KOG2791|consen 113 DLAKDRVVLVLQVHNRPQYLRVLVESLRKVKGI-SETLLIFSHDGY---------FEEINR---IIESIKF--CQVKQIF 177 (455)
T ss_pred ccccceEEEEEEEcCcHHHHHHHHHHHHhccCc-cceEEEEeccch---------HHHHHH---HHhhccc--ceeEEEe
Confidence 455667889999999999999999999998633 455455555553 444344 4444332 3333222
Q ss_pred ecCCc---------------------------ch---------------------------hHHHhhhccCCC-CCceEE
Q 044432 134 RTANA---------------------------GL---------------------------QAQWLEAWWPTS-DHEFAF 158 (584)
Q Consensus 134 R~~Nl---------------------------GL---------------------------a~sIIEgwyPts-~~e~VI 158 (584)
-+-+. |+ .+-+-++.--+. ..++++
T Consensus 178 ~Pys~qlypt~FPG~~p~DCp~kmkk~~a~k~~C~n~ssPD~yGnyR~ak~~q~KHHWWWkmnfVwd~ve~~~~~~g~iL 257 (455)
T KOG2791|consen 178 SPYSPQLYPTSFPGVTPNDCPNKMKKGDAAKGHCENNSSPDQYGNYRSAKIVQLKHHWWWKMNFVWDGVEETKGHEGHIL 257 (455)
T ss_pred cCCCcccccCcCCCCCchhcccccccchhhhcCCcCCCCcccccCccchhhhhhhhhhhHhHHHHHHHHHHhccCCceEE
Confidence 22211 11 111122211122 356999
Q ss_pred EEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecCCCCCCCCCCcccCCCCCCceee-ecCCcchhhcCccc
Q 044432 159 VVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRPRFVPGKHGNKIHLDNGTQLFLY-QLVGTWGQLLFPQP 237 (584)
Q Consensus 159 VLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P~f~~~k~~~~i~~d~~~d~FL~-Q~PsSWGwatw~d~ 237 (584)
+||.|-.+.|+||+=++..... +- ..=|.-+-+||-.+. ...+ -..| .-+.-+| -....=|-+.-+..
T Consensus 258 flEEDH~LaPdayhv~~~l~~l-kp----~~Cp~C~~~sLg~y~-s~sr----yGqD-~~~v~~w~s~~hNmG~al~rn~ 326 (455)
T KOG2791|consen 258 FLEEDHFLAPDAYHVIQTLTRL-KP----AKCPDCFAASLGPYD-SKSR----YGQD-EGLVSLWASRMHNMGYALNRNV 326 (455)
T ss_pred EEecccccChhHHHHHHHHHhc-Cc----ccCCcceeeeccccc-cccc----cccc-ccceeehhhhcccchhhhhHHH
Confidence 9999999999999998877532 21 122455555554332 1101 0001 1122222 24466788999999
Q ss_pred hHHHHHHHHHhhh---cC---------CCCccccc------ccceeccccccccccCCCCCC
Q 044432 238 WKEFRLWYDDHKA---RG---------IKPFLDGM------RALSVSHRDAGVNYGKSAGPD 281 (584)
Q Consensus 238 WkeF~~w~~~~~~---~g---------~~P~Le~m------rSlstnh~~aGvh~~~~~~pd 281 (584)
|+..+.--+..=. .+ .+-+...+ |--.+-..+-|+|-++..-|+
T Consensus 327 wqki~~c~~~FC~~DDYNWDwtl~~~~~~clp~~~~vl~~~~pr~~H~GdCG~H~~~~ce~~ 388 (455)
T KOG2791|consen 327 WQKIHQCAREFCFFDDYNWDWTLWATVFPCLPSPVYVLRGPRPRAVHFGDCGLHQGRGCEGD 388 (455)
T ss_pred HHHHHHhHHhhcccccCCcceeehhhhccccCcceEEeecCCCceEEecccccccCCCCCcc
Confidence 9988864432111 11 11111111 333444589999999888776
No 59
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=93.40 E-value=0.54 Score=52.70 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=65.5
Q ss_pred ceeEEEEEEcCCCchHHHHHHHHH-hcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceE--EEe
Q 044432 57 NFTLIIKVLTFNRLNSLSRCLHSL-SAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKF--VHY 133 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL~SL-~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vt--Ii~ 133 (584)
...+.|+|.+||-.+.+.++|+|+ .+-+|. ..+++|-.|+..+.+ .+.+ .+..+.+ | +++ +..
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T-----~~~v---~~l~~~~--p--~v~~vv~~ 130 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYE--NYRIFVGTYPNDPAT-----LREV---DRLAARY--P--RVHLVIVP 130 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCC--CeEEEEEECCCChhH-----HHHH---HHHHHHC--C--CeEEEEeC
Confidence 556899999999999999999985 667883 567777776543211 1211 2222333 3 343 332
Q ss_pred ecCCcchhHHH---hhhc--c---CCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 134 RTANAGLQAQW---LEAW--W---PTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 134 R~~NlGLa~sI---IEgw--y---Pts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
+....|=+... ++.. . ....++.+++++-|..++|++++.+++.+
T Consensus 131 ~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 131 HDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL 183 (504)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc
Confidence 22221222222 2110 0 11256899999999999999999887653
No 60
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=92.65 E-value=1.5 Score=46.25 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=63.7
Q ss_pred EEEEEEcCCCc--hHHHHHHHHHhcCCCCC--CceeEEEEecCCCCCcCCCcchhhHHHHHHHh-hccc--cCCCceEEE
Q 044432 60 LIIKVLTFNRL--NSLSRCLHSLSAADYLT--DRVHLHVYVDHSAPLADQSSSESDSRAILRFL-DGFE--WKFGDKFVH 132 (584)
Q Consensus 60 I~IvVfaYNRP--~sLkRLL~SL~~AdY~g--d~v~L~IflD~pk~~s~~~~kVdevrellk~L-~gF~--WP~g~vtIi 132 (584)
+-|-+.+-.|+ ..|.+||+||-++--.. +.+.+.|++-.+.+ ..+. .+.+-+ ..|. +-.|.+.|+
T Consensus 54 L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp-----~~~~---~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 54 LCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDP-----DYHP---SVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred EEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCCh-----hhhH---HHHHHHHHHhHHHHHhCceEEE
Confidence 55555555555 47999999999865443 35677777755432 1222 111111 1111 122445555
Q ss_pred eecCC-----------cchh---HHHhhh--c-------cCCCCCceEEEEcCCceeChhHHHHHHHHHHhhc
Q 044432 133 YRTAN-----------AGLQ---AQWLEA--W-------WPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYY 182 (584)
Q Consensus 133 ~R~~N-----------lGLa---~sIIEg--w-------yPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~ 182 (584)
..... .|-. ..|-+- + |-.+.-.+.+.||||++.+|+|+.-++.++..-.
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~ 198 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWE 198 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhc
Confidence 44433 1110 000000 0 0022346899999999999999999999997743
No 61
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=92.16 E-value=1.1 Score=45.65 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=58.6
Q ss_pred EEEEc-CCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcch
Q 044432 62 IKVLT-FNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 62 IvVfa-YNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
|++-+ |+|++.|.++|+.|++..+. .++ ++|-.+ +.+. -+ . ..|+...+.|+.+.. -
T Consensus 3 vvi~t~~~R~~~L~~~l~~l~~~~~l-~~I-vVvWn~-~~~~------P~---~-------~~~~~~~vpV~~~~~---~ 60 (247)
T PF09258_consen 3 VVINTSYKRSDLLKRLLRHLASSPSL-RKI-VVVWNN-PNPP------PP---S-------SKWPSTGVPVRVVRS---S 60 (247)
T ss_dssp EEEEE-SS-HHHHHHHHHHHTTSTTE-EEE-EEEEE--TS--------TH---H-------HHHT---S-EEEEEE---S
T ss_pred EEEEecccchHHHHHHHHHHHcCCCC-CeE-EEEeCC-CCCC------Cc---c-------cccCCCCceEEEEec---C
Confidence 34444 99999999999999887653 233 333343 2211 00 0 235544343333322 1
Q ss_pred hHHHhhhccCCC--CCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEee
Q 044432 141 QAQWLEAWWPTS--DHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQ 199 (584)
Q Consensus 141 a~sIIEgwyPts--~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY 199 (584)
.+++-.-|+|.. ..+.|+.++||+.+++.=+.|.-..- +..+ .+|.|...-
T Consensus 61 ~nsLnnRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W---~~~p-----drlVGf~~R 113 (247)
T PF09258_consen 61 RNSLNNRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVW---REFP-----DRLVGFPPR 113 (247)
T ss_dssp SHHGGGGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHH---CCST-----TSEEES-EE
T ss_pred CccHHhcCcCccccCcceEEEecCCcccCHHHHHHHHHHH---HhCh-----hheeCCccc
Confidence 233445566655 57799999999999998888776664 3333 678875543
No 62
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=92.11 E-value=2.5 Score=42.83 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=58.0
Q ss_pred EEEEcCCCch------HHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeec
Q 044432 62 IKVLTFNRLN------SLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRT 135 (584)
Q Consensus 62 IvVfaYNRP~------sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~ 135 (584)
|++.+++|.+ .++.+|.+|++... ...++++|--+++.. ..+ .++.+.++.+ +.+..+...
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~-~~~~eiIvvd~~s~~------~~~--~~l~~~~~~~----~~~~~i~~~ 68 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQS-DPDFEIIVVDDGSSD------EFD--EELKKLCEKN----GFIRYIRHE 68 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCch------hHH--HHHHHHHhcc----CceEEEEcC
Confidence 6777777774 35555888888532 345666554444321 111 3445555554 333233333
Q ss_pred CC---cch--hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHH
Q 044432 136 AN---AGL--QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRG 176 (584)
Q Consensus 136 ~N---lGL--a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ 176 (584)
.+ .|. +.++.-. ....+.+++++.|+.++|.|+..+..
T Consensus 69 ~~~~~f~~a~arN~g~~---~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 69 DNGEPFSRAKARNIGAK---YARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CCCCCcCHHHHHHHHHH---HcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 22 243 3332222 23678999999999999999999888
No 63
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=91.20 E-value=1.4 Score=44.67 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHhcCCCC--CCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 59 TLIIKVLTFNRLNSLSRCLHSLSAADYL--TDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 59 ~I~IvVfaYNRP~sLkRLL~SL~~AdY~--gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
...|++.+||--+++.=+++-+.+ ... +...+++|-=|++.+.+ ++. .+.++..- .--++.++.|..
T Consensus 4 kYsvilPtYnEk~Nlpi~~~li~~-~~~e~~~~~eiIivDD~SpDGt-----~~~----a~~L~k~y-g~d~i~l~pR~~ 72 (238)
T KOG2978|consen 4 KYSVILPTYNEKENLPIITRLIAK-YMSEEGKKYEIIIVDDASPDGT-----QEV----AKALQKIY-GEDNILLKPRTK 72 (238)
T ss_pred ceeEEeccccCCCCCeeeHHHHHh-hhhhhcCceEEEEEeCCCCCcc-----HHH----HHHHHHHh-CCCcEEEEeccC
Confidence 357899999987777733333332 222 34557777666664322 332 33333221 114788999999
Q ss_pred CcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhccc
Q 044432 137 NAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYH 184 (584)
Q Consensus 137 NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd 184 (584)
.+||..+.+.|++-. .++++|+++-|+-=.|-|..=|-....++.|+
T Consensus 73 klGLgtAy~hgl~~a-~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~d 119 (238)
T KOG2978|consen 73 KLGLGTAYIHGLKHA-TGDFIVIMDADLSHHPKFIPEFIRLQKEGNYD 119 (238)
T ss_pred cccchHHHHhhhhhc-cCCeEEEEeCccCCCchhHHHHHHHhhccCcc
Confidence 999999999996432 57899999999999999998888887776655
No 64
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=89.05 E-value=3.6 Score=39.10 Aligned_cols=45 Identities=29% Similarity=0.573 Sum_probs=32.1
Q ss_pred CCcchhHHHhhhc-cC-CCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 136 ANAGLQAQWLEAW-WP-TSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 136 ~NlGLa~sIIEgw-yP-ts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.-.|+..+=+..| .. .++.++++|||||+.+++.|-+.+..++..
T Consensus 66 gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~l~~~~~~ 112 (200)
T PF01755_consen 66 GEIGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEFLEEILSH 112 (200)
T ss_pred ceEeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHHHHHHHhh
Confidence 3456654444444 11 225799999999999999999999887754
No 65
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=87.58 E-value=4 Score=47.95 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=65.2
Q ss_pred eeEEEEEEcCCCchHHHHHHHHHh-cCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecC
Q 044432 58 FTLIIKVLTFNRLNSLSRCLHSLS-AADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTA 136 (584)
Q Consensus 58 m~I~IvVfaYNRP~sLkRLL~SL~-~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~ 136 (584)
-.+.|.+.+||-.+...++++++. +-+|+. .++++-.|++.++ -.+.++ +..+.+ |.-.+.+..|..
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~-----T~~~~~---~l~~~~--p~~~~v~~~~~g 130 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLDYEN--YHIFVGTYPNDPA-----TQADVD---AVCARF--PNVHKVVCARPG 130 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCCCCC--eEEEEEecCCChh-----HHHHHH---HHHHHC--CCcEEEEeCCCC
Confidence 347899999999999999999885 568874 5666665533111 122222 222333 322333445544
Q ss_pred CcchhHHHhhhc------cC--CCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 137 NAGLQAQWLEAW------WP--TSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 137 NlGLa~sIIEgw------yP--ts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
|.|=+...-.++ .. ...++.++|.+-|..++|++++.+++..
T Consensus 131 ~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~~~~~l~ 180 (727)
T PRK11234 131 PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLV 180 (727)
T ss_pred CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHHHHHhhc
Confidence 555433322221 11 1245668889999999999999665543
No 66
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=83.64 E-value=8.1 Score=41.38 Aligned_cols=140 Identities=19% Similarity=0.148 Sum_probs=81.9
Q ss_pred cccCCCCCCCCCccccccccccCCC-------CCC-CCCceeEEEEEEcCCCch----HHHHHHHHHhcCCCCCC---ce
Q 044432 26 YHSSLPTSKNLTRTETETFNLIPQN-------APS-HSSNFTLIIKVLTFNRLN----SLSRCLHSLSAADYLTD---RV 90 (584)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~m~I~IvVfaYNRP~----sLkRLL~SL~~AdY~gd---~v 90 (584)
++++. ++|..-...+|.+-..+++ +-. ++.+|.+.|+|.+||-++ .+.-++.+|++ .|..+ +-
T Consensus 28 ~~~~~-~r~~~e~~e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~~le~-ry~~~~~F~~ 105 (323)
T KOG2977|consen 28 FESHL-PRPALENEETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEK-RYLSDKSFTY 105 (323)
T ss_pred hhccC-CCccccccceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHHHHHH-HhccCCCCce
Confidence 55777 6666665555555443222 111 455778999999999765 45667788888 67664 33
Q ss_pred eEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchhHHHhhhccCCCCCceEEEEcCCc--eeCh
Q 044432 91 HLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQAQWLEAWWPTSDHEFAFVVEDDL--EVSP 168 (584)
Q Consensus 91 ~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa~sIIEgwyPts~~e~VIVLEDDL--eVSP 168 (584)
.+.|..|++.++. ++ -..++-.. -..-.+.|+.-.+|.|=..++-.|. -.+.-.++++..-|= .++|
T Consensus 106 eiiVvddgs~d~T-----~~---~a~k~s~K--~~~d~irV~~l~~nrgKGgAvR~g~-l~~rG~~ilfadAdGaTkf~d 174 (323)
T KOG2977|consen 106 EIIVVDDGSTDST-----VE---VALKFSRK--LGDDNIRVIKLKKNRGKGGAVRKGM-LSSRGQKILFADADGATKFAD 174 (323)
T ss_pred eEEEeCCCCchhH-----HH---HHHHHHHH--cCcceEEEeehhccCCCCcceehhh-HhccCceEEEEcCCCCccCCC
Confidence 8888888875321 22 11333321 2223678888899988655544431 112445666666553 2333
Q ss_pred hHHHHHHHHHHh
Q 044432 169 LFYKFLRGLIVN 180 (584)
Q Consensus 169 ~Fy~Ymn~ALl~ 180 (584)
+..+..+|..
T Consensus 175 --~ekLe~al~~ 184 (323)
T KOG2977|consen 175 --LEKLEKALND 184 (323)
T ss_pred --HHHHHHHHHh
Confidence 4456666643
No 67
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=77.91 E-value=11 Score=44.24 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=61.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHH-hcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCC
Q 044432 59 TLIIKVLTFNRLNSLSRCLHSL-SAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTAN 137 (584)
Q Consensus 59 ~I~IvVfaYNRP~sLkRLL~SL-~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~N 137 (584)
.+.|.|.+||-.+.+.+|++++ ++-+|+. .+++|-++.+..+ ..+ ++.+....+ +.++++..+.+
T Consensus 72 ~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD~~-----T~~---~~~~~~~~~----p~~~~v~~~~~ 137 (703)
T PRK15489 72 PLAIMVPAWKEYDVIAKMIENMLATLDYRR--YVIFVGTYPNDAE-----TIT---EVERMRRRY----KRLVRVEVPHD 137 (703)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHHhcCCCCC--eEEEEEecCCCcc-----HHH---HHHHHhccC----CcEEEEEcCCC
Confidence 4799999999999999999996 5669973 3344422222111 111 122222333 24555554444
Q ss_pred --cchhH---HHhhh---ccCC-C-CCceEEEEcCCceeChhHHHHHHHHH
Q 044432 138 --AGLQA---QWLEA---WWPT-S-DHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 138 --lGLa~---sIIEg---wyPt-s-~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.|=+. ..+.. .... . .+..+++.+-|-+++|++++||++.+
T Consensus 138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~ 188 (703)
T PRK15489 138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL 188 (703)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc
Confidence 23211 11111 0001 1 23348889999999999999998765
No 68
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=75.10 E-value=14 Score=42.62 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=75.4
Q ss_pred ceeEEEEEEcCCCchHHHHHH-------HHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHH---HHHHhhccccCC
Q 044432 57 NFTLIIKVLTFNRLNSLSRCL-------HSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRA---ILRFLDGFEWKF 126 (584)
Q Consensus 57 ~m~I~IvVfaYNRP~sLkRLL-------~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevre---llk~L~gF~WP~ 126 (584)
..+..|++.+|| |...|++ +||++- -.+...+.+|-+|...++- .+.|.++ +.+.++++
T Consensus 143 ~hrTAilmPiyn--Ed~~rVfAgLrA~~eSla~T-g~~~~FD~FVLSDs~dpdi----alAEq~a~~~l~~e~~g~---- 211 (736)
T COG2943 143 LHRTAILMPIYN--EDVNRVFAGLRATYESLAAT-GHAEHFDFFVLSDSRDPDI----ALAEQKAWAELCRELGGE---- 211 (736)
T ss_pred ccceeEEeeccc--cCHHHHHHHHHHHHHHHHhh-CCcccceEEEEcCCCCchh----hhhHHHHHHHHHHHhCCC----
Confidence 344899999999 4455555 455552 2345679999999875432 2333333 44555555
Q ss_pred CceEEEeecCCcch----hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHH
Q 044432 127 GDKFVHYRTANAGL----QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIV 179 (584)
Q Consensus 127 g~vtIi~R~~NlGL----a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl 179 (584)
+++.-++|..|.|= ...+..-| .+.|++.+||+-|-+.|+.-+.=+-++.+
T Consensus 212 ~~ifYRrRr~n~~RKaGNIaDfcrRw--G~~Y~~MlVLDADSvMtgd~lvrLv~~ME 266 (736)
T COG2943 212 GNIFYRRRRRNVKRKAGNIADFCRRW--GSAYSYMLVLDADSVMTGDCLVRLVRLME 266 (736)
T ss_pred CceeeehHhhhhcccccCHHHHHHHh--CcccceEEEeecccccCchHHHHHHHHHh
Confidence 89998999888764 33444443 56899999999999999998877777653
No 69
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=66.94 E-value=1.6e+02 Score=33.94 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCcEEEEEeecC
Q 044432 153 DHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRSIYGASLQRP 201 (584)
Q Consensus 153 ~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~V~GISLY~P 201 (584)
.+++++.++-|..+.|.=+..|-.++.+ + ++|.|++|+.-
T Consensus 201 ~~~~il~~DaDt~~~p~~~~~lv~~m~~---d------~~i~gvCG~t~ 240 (527)
T PF03142_consen 201 FYEYILMVDADTKFDPDSVNRLVDAMER---D------PKIGGVCGETR 240 (527)
T ss_pred ceEEEEEecCCceEcHHHHHHHHHHHcC---C------CCeEEEeceeE
Confidence 4789999999999999999999888743 3 69999999854
No 70
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=66.82 E-value=20 Score=38.17 Aligned_cols=77 Identities=23% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHHHHHhhccccCCCceEEEeecCCcchhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCCCCCCCc
Q 044432 113 RAILRFLDGFEWKFGDKFVHYRTANAGLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAPSNLTRS 192 (584)
Q Consensus 113 rellk~L~gF~WP~g~vtIi~R~~NlGLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~~~~sp~ 192 (584)
.++++.++.+ =+..++.-+++.+.+||..+|+-+=-...+.-++++|=||+..|. -.-+++++..|..-. .+
T Consensus 84 ~~~L~~v~~i-~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~--~~~l~qmi~~ye~~g-----~s 155 (291)
T COG1210 84 RELLEEVRSI-PPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSE--KPCLKQMIELYEETG-----GS 155 (291)
T ss_pred HHHHHHHHhc-ccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCC--chHHHHHHHHHHHhC-----Cc
Confidence 3456666666 334577888999999999998877212335569999999999997 567788888886554 45
Q ss_pred EEEEE
Q 044432 193 IYGAS 197 (584)
Q Consensus 193 V~GIS 197 (584)
|.|+-
T Consensus 156 vi~v~ 160 (291)
T COG1210 156 VIGVE 160 (291)
T ss_pred EEEEE
Confidence 55554
No 71
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=63.71 E-value=90 Score=35.23 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=74.8
Q ss_pred CCceeEEEEEEcCCC-chHHHHHHHHHhcCCCC-CCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEE
Q 044432 55 SSNFTLIIKVLTFNR-LNSLSRCLHSLSAADYL-TDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVH 132 (584)
Q Consensus 55 ~~~m~I~IvVfaYNR-P~sLkRLL~SL~~AdY~-gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi 132 (584)
..+.+|=|+|...+| .+.+.|.|+-.++.-.. .+.+.|+|-..+.+.+.+ .+.++.++++.++. +.|..++.++
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~---~~~~ik~~l~~l~~-k~~~~~i~~i 319 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSD---SISQIKELLEELER-KYPFSRIKWI 319 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccch---hHHHHHHHHHHHHH-hCCccceEEE
Confidence 335668888999999 99999999999986322 457888888887643322 23333344444332 2366677777
Q ss_pred eec-CCc--chhHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHH
Q 044432 133 YRT-ANA--GLQAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRG 176 (584)
Q Consensus 133 ~R~-~Nl--GLa~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ 176 (584)
... .+. |.+-.+.-. ....++=+++.+-|+++.+.||.=+..
T Consensus 320 ~~~~~~fsr~~~Ld~g~~--~~~~d~L~f~~Dvd~~f~~~fL~rcR~ 364 (499)
T PF05679_consen 320 SVKTGEFSRGAALDVGAK--KFPPDSLLFFCDVDMVFTSDFLNRCRM 364 (499)
T ss_pred EecCCCccHHHHHHhhcc--cCCCCcEEEEEeCCcccCHHHHHHHHH
Confidence 766 432 333222222 123467789999999999999976543
No 72
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=62.33 E-value=6 Score=35.87 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=24.6
Q ss_pred CCcchhHHHhhhcc--CCCCCceEEEEcCCceeChh
Q 044432 136 ANAGLQAQWLEAWW--PTSDHEFAFVVEDDLEVSPL 169 (584)
Q Consensus 136 ~NlGLa~sIIEgwy--Pts~~e~VIVLEDDLeVSP~ 169 (584)
.-.|+..+=+..|. ..++.+.++|||||+.++|.
T Consensus 63 gEiGC~lSH~~~w~~~~~~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 63 GEIGCFLSHYKLWQKIVESNLEYALILEDDAILDPD 98 (128)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCcEECCC
Confidence 34677665555552 22356899999999999998
No 73
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=62.16 E-value=1.8e+02 Score=32.58 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=43.6
Q ss_pred ceeEEEEEEcC-CCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhc--cccCCCceEEEe
Q 044432 57 NFTLIIKVLTF-NRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDG--FEWKFGDKFVHY 133 (584)
Q Consensus 57 ~m~I~IvVfaY-NRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~g--F~WP~g~vtIi~ 133 (584)
..+++-.+.+. +-.+.++|||++|-.-+ -..+|++|.-.+. .+..++...++. ..=.+++|.++.
T Consensus 77 ~~r~AYLI~~h~~d~~~l~RLL~aLYhpr-----N~y~IHlDkKS~~-------~er~~l~~~v~~~~~~~~~~NV~vl~ 144 (421)
T PLN03183 77 LPRFAYLVSGSKGDLEKLWRTLRALYHPR-----NQYVVHLDLESPA-------EERLELASRVENDPMFSKVGNVYMIT 144 (421)
T ss_pred CCeEEEEEEecCCcHHHHHHHHHHhcCCC-----ceEEEEecCCCCh-------HHHHHHHHHhhccchhhccCcEEEEe
Confidence 45566666667 55789999999994421 2378999985322 111233333332 112247888766
Q ss_pred ecC--CcchhHHHhhh
Q 044432 134 RTA--NAGLQAQWLEA 147 (584)
Q Consensus 134 R~~--NlGLa~sIIEg 147 (584)
+.. +.| .-+.+++
T Consensus 145 k~~~V~WG-G~S~V~A 159 (421)
T PLN03183 145 KANLVTYR-GPTMVAN 159 (421)
T ss_pred cceeeccC-ChHHHHH
Confidence 533 445 2234444
No 74
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=60.93 E-value=21 Score=40.17 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCc---chhHH
Q 044432 67 FNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANA---GLQAQ 143 (584)
Q Consensus 67 YNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~Nl---GLa~s 143 (584)
-.||+-..|+++.+-. .+-+..+.=-+||.+-++++.++.. .+++-|+.=|. +.|.-.. |+=-+
T Consensus 300 kRR~eRreRM~r~fde---~gIe~~~veAvDgk~lnt~~~~~lg-----v~~LpGY~DPy-----s~Rplt~GEiGCFLS 366 (568)
T KOG4179|consen 300 KRRPERRERMLRIFDE---LGIEYSLVEAVDGKKLNTSQLEALG-----VQMLPGYRDPY-----SGRPLTKGEIGCFLS 366 (568)
T ss_pred ccChHHHHHHHHHHHH---hcceEEEEecccccccchhHHHhcC-----ceecCCccCcc-----cCCcccCcceeeehh
Confidence 4699999999999987 4556677777888765443211111 45677775553 3444444 33222
Q ss_pred Hhhhcc-CCC-CCceEEEEcCCceeChhHHHHHHHHHHhhcc
Q 044432 144 WLEAWW-PTS-DHEFAFVVEDDLEVSPLFYKFLRGLIVNYYY 183 (584)
Q Consensus 144 IIEgwy-Pts-~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Y 183 (584)
=..-|- ++. ..++++|+|||+..+++|..=+...+..-..
T Consensus 367 HY~iW~evV~r~l~kvlvfEDD~RFe~~f~~rl~~lm~d~~~ 408 (568)
T KOG4179|consen 367 HYNIWKEVVDRGLEKVLVFEDDLRFEHDFRTRLMRLMQDVDA 408 (568)
T ss_pred HHHHHHHHHHhccceEEEecccccccHHHHHHHHHHHHHHHh
Confidence 122221 233 6889999999999999999988877765444
No 75
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=50.91 E-value=15 Score=38.05 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=32.6
Q ss_pred cchhHHHhhhcc--CCCCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 138 AGLQAQWLEAWW--PTSDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 138 lGLa~sIIEgwy--Pts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.||..|=+..|. ..++..+++|||||+.++.+|-.++..++..
T Consensus 69 iGC~lSH~~lw~~~~~~~~~yi~I~EDDV~l~~~f~~~l~~~~~~ 113 (255)
T COG3306 69 IGCYLSHLKLWKKALEENLPYILILEDDVVLGEDFEEFLEDDLKL 113 (255)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEecccccccccHHHHHHHHHhh
Confidence 477655555552 2224558999999999999999999999866
No 76
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=45.30 E-value=75 Score=28.02 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=40.6
Q ss_pred EeecCCch----hhhhhh-hCCCcccchhHHHhhhhhhhhccccCCchHHHHHHHHHH--HHHHHhhhcCcceEEEecce
Q 044432 367 IFLGSHSD----FLYDLA-RRGHPVIDADQFLNDIRAYESLSLQSSDARLTKEVLVKV--YVIKKCLEYRYSAWVVDANF 439 (584)
Q Consensus 367 ~~~~~~~~----~~~dl~-~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vi~kc~~~~y~~~~~~~~~ 439 (584)
++.|+|-- +..-|+ +.|.++|+.|.+...+.....-. .....+.. +.+... ..+++.++.|.+.++-++|.
T Consensus 3 i~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~vvd~~~~ 80 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPS-PSDYIEAE-ERAYQILNAAIRKALRNGNSVVVDNTNL 80 (143)
T ss_dssp EEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGC-CCCCHHHH-HHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred EEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHccccccc-chhHHHHH-HHHHHHHHHHHHHHHHcCCCceeccCcC
Confidence 55666543 666666 67899999999988666522222 11223322 222222 34677899999977755544
No 77
>PTZ00088 adenylate kinase 1; Provisional
Probab=42.14 E-value=53 Score=33.28 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=24.2
Q ss_pred ceeEeecCCch----hhhhhhhC-CCcccchhHHHhh
Q 044432 364 QNHIFLGSHSD----FLYDLARR-GHPVIDADQFLND 395 (584)
Q Consensus 364 ~n~~~~~~~~~----~~~dl~~~-g~~~i~~~~~~~~ 395 (584)
.+.+++|+|-- ...-||.+ |.++|++++++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~ 43 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILRE 43 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHH
Confidence 34778888754 55666766 9999999999864
No 78
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=41.38 E-value=58 Score=28.05 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=35.7
Q ss_pred eEeecCCc----hhhhhhhhC-CCcccchhHHHhhhhhhhhccccCCchHHHHHHHHHHHHHH---Hhh-hcCcceEEEe
Q 044432 366 HIFLGSHS----DFLYDLARR-GHPVIDADQFLNDIRAYESLSLQSSDARLTKEVLVKVYVIK---KCL-EYRYSAWVVD 436 (584)
Q Consensus 366 ~~~~~~~~----~~~~dl~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~---kc~-~~~y~~~~~~ 436 (584)
+++.|++- .+...||.+ |.++|+.|+++ +.......+....+. ......++.+ +.. ...+..|++|
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ii~ 76 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDDLI---REPGWIERDDDEREY--IDADIDLLDDILEQLQNKPDNDNWIID 76 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH---CCGTHCHGCTTCCHH--HHHHHHHHHHHHHHHHETTT--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecceE---EeccccccCcchhhH--HHHHHHHHHHHHHhhhccCCCCeEEEe
Confidence 45566653 377889998 99999999954 222222332222211 1111222222 111 2468899999
Q ss_pred ccee
Q 044432 437 ANFL 440 (584)
Q Consensus 437 ~~~~ 440 (584)
|...
T Consensus 77 g~~~ 80 (121)
T PF13207_consen 77 GSYE 80 (121)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 9433
No 79
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=39.47 E-value=66 Score=30.91 Aligned_cols=29 Identities=14% Similarity=0.414 Sum_probs=26.1
Q ss_pred CCCceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 152 SDHEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 152 s~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
.+|+.++++++|+.++|+|+.-|...+..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLAD 58 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhC
Confidence 47999999999999999999999888744
No 80
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.82 E-value=19 Score=37.92 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=57.7
Q ss_pred cccccccccccc-eeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCccc-c-hhHHHhhhhhhhh
Q 044432 325 LGTVLPSVQRQE-TVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVI-D-ADQFLNDIRAYES 401 (584)
Q Consensus 325 l~~~l~~~~~~~-~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i-~-~~~~~~~~~~~~~ 401 (584)
+..+|..-+.++ .|--.|.++.+. +|-.++=-|+.+. --|+...+... ..-|...+ . .....+..+.-=.
T Consensus 6 ~k~iL~~A~~~~yaV~AfNv~n~e~--~~avi~AAee~~s-PvIlq~~~~~~----~~~g~~~~~~~~~~~A~~~~VPVa 78 (284)
T PRK12857 6 VAELLKKAEKGGYAVGAFNCNNMEI--VQAIVAAAEAEKS-PVIIQASQGAI----KYAGIEYISAMVRTAAEKASVPVA 78 (284)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHH--HHHHHHHHHHhCC-CEEEEechhHh----hhCCHHHHHHHHHHHHHHCCCCEE
Confidence 444555555554 678889998876 8888888888884 34444444331 11232221 0 0001111111112
Q ss_pred ccccCCc-hHHHHHHHHHHHHHHHhhhcCcceEEEecceeecc
Q 044432 402 LSLQSSD-ARLTKEVLVKVYVIKKCLEYRYSAWVVDANFLPFS 443 (584)
Q Consensus 402 ~~~~~~~-~~~~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~ 443 (584)
+-+-|.. .+ .|++|++.||++-|+||+.|++.
T Consensus 79 lHLDH~~~~e----------~i~~ai~~GftSVM~DgS~lp~e 111 (284)
T PRK12857 79 LHLDHGTDFE----------QVMKCIRNGFTSVMIDGSKLPLE 111 (284)
T ss_pred EECCCCCCHH----------HHHHHHHcCCCeEEEeCCCCCHH
Confidence 2333332 22 36789999999999999998764
No 81
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=37.59 E-value=21 Score=37.80 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=19.8
Q ss_pred HHHhhhcCcceEEEecceeeccC
Q 044432 422 IKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 422 i~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
|++|++.||++-|+||+.+++..
T Consensus 93 i~~ai~~GftSVM~DgS~l~~ee 115 (286)
T PRK08610 93 CKEAIDAGFTSVMIDASHSPFEE 115 (286)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHH
Confidence 36799999999999999987654
No 82
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=37.43 E-value=2.4e+02 Score=30.39 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=74.1
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHh-hccccCCCceEEEeecCCcchhH
Q 044432 64 VLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFL-DGFEWKFGDKFVHYRTANAGLQA 142 (584)
Q Consensus 64 VfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L-~gF~WP~g~vtIi~R~~NlGLa~ 142 (584)
+.+|++| -+.-.|..|..|-- .++ ++|..+... ..+.+.+ ++-+|. -+++..++.+..||+.
T Consensus 26 lpV~~KP-mi~y~l~~L~~aGI--~dI-~II~~~~~~------------~~~~~llGdgs~~g-v~itY~~Q~~p~GlA~ 88 (286)
T COG1209 26 LPVYDKP-MIYYPLETLMLAGI--RDI-LIVVGPEDK------------PTFKELLGDGSDFG-VDITYAVQPEPDGLAH 88 (286)
T ss_pred ceecCcc-hhHhHHHHHHHcCC--ceE-EEEecCCch------------hhhhhhhcCccccC-cceEEEecCCCCcHHH
Confidence 4457888 58889999998632 233 444433322 1222333 445564 3789999999999999
Q ss_pred HHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHHHhhcccCC----CCCCCcEEEEEeec
Q 044432 143 QWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLIVNYYYHAP----SNLTRSIYGASLQR 200 (584)
Q Consensus 143 sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~ALl~Y~Yd~~----~~~sp~V~GISLY~ 200 (584)
+++-+=.-.+++.++++|=|.+.-- .+=.+++.+-.+ ..+.. ..-+|+=|||.-..
T Consensus 89 Av~~a~~fv~~~~f~l~LGDNi~~~-~l~~~~~~~~~~-~~ga~i~~~~V~dP~rfGV~e~d 148 (286)
T COG1209 89 AVLIAEDFVGDDDFVLYLGDNIFQD-GLSELLEHFAEE-GSGATILLYEVDDPSRYGVVEFD 148 (286)
T ss_pred HHHHHHhhcCCCceEEEecCceecc-ChHHHHHHHhcc-CCCcEEEEEEcCCcccceEEEEc
Confidence 9986632344688999999999887 777777766321 11110 13356666666443
No 83
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.18 E-value=79 Score=26.87 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCC
Q 044432 62 IKVLTFNRLNSLSRCLHSLSAAD 84 (584)
Q Consensus 62 IvVfaYNRP~sLkRLL~SL~~Ad 84 (584)
+.+..-.||+.|.++++.|..++
T Consensus 4 l~v~ipD~PG~L~~ll~~l~~an 26 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIGPRN 26 (85)
T ss_pred EEEecCCCCcHHHHHHHHhCCCc
Confidence 44455579999999999999543
No 84
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.93 E-value=24 Score=37.21 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=51.2
Q ss_pred ceeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCccc-c-hhHHHhhhhhhhhccccCCch-HHH
Q 044432 336 ETVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVI-D-ADQFLNDIRAYESLSLQSSDA-RLT 412 (584)
Q Consensus 336 ~~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i-~-~~~~~~~~~~~~~~~~~~~~~-~~~ 412 (584)
-.|--.|.++.+. +|-.+.=-|+.+.--. +...+..+ ..-|...+ . +..+.+..+.-=.+-+-|..+ +
T Consensus 18 yaV~AfN~~n~e~--~~avi~AAee~~sPvI-iq~~~~~~----~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e-- 88 (284)
T PRK12737 18 YAVPAFNIHNLET--LQVVVETAAELRSPVI-LAGTPGTF----SYAGTDYIVAIAEVAARKYNIPLALHLDHHEDLD-- 88 (284)
T ss_pred ceEEEEEeCCHHH--HHHHHHHHHHhCCCEE-EEcCccHH----hhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH--
Confidence 3577788888766 8888877787777433 33333321 11222221 0 111111111111233344332 2
Q ss_pred HHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 413 KEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 413 ~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
.|++|++.||++-|+||+.|++..
T Consensus 89 --------~i~~ai~~GftSVMiDgS~lp~ee 112 (284)
T PRK12737 89 --------DIKKKVRAGIRSVMIDGSHLSFEE 112 (284)
T ss_pred --------HHHHHHHcCCCeEEecCCCCCHHH
Confidence 357799999999999999987654
No 85
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=33.55 E-value=25 Score=37.67 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHHhhhcCcceEEEecceeeccC
Q 044432 422 IKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 422 i~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
|++|++.||++-|+||+.+++..
T Consensus 90 i~~ai~~GftSVM~DgS~l~~ee 112 (307)
T PRK05835 90 CEKAVKAGFTSVMIDASHHAFEE 112 (307)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHH
Confidence 56799999999999999887653
No 86
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=32.61 E-value=26 Score=37.10 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=51.4
Q ss_pred ccceeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCcccc--hhHHHhhhhhhhhccccCCc-hH
Q 044432 334 RQETVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVID--ADQFLNDIRAYESLSLQSSD-AR 410 (584)
Q Consensus 334 ~~~~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i~--~~~~~~~~~~~~~~~~~~~~-~~ 410 (584)
..-.|--.|.++.+. +|-.++--|+.+.- -||...+..+ ..-|...+= +..+.+..+.-=.+-+-|.. .+
T Consensus 16 ~~yAV~AfN~~n~e~--~~avi~AAee~~sP-vIlq~s~~~~----~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e 88 (286)
T PRK12738 16 NGYAVPAFNIHNAET--IQAILEVCSEMRSP-VILAGTPGTF----KHIALEEIYALCSAYSTTYNMPLALHLDHHESLD 88 (286)
T ss_pred CCceEEEEEeCCHHH--HHHHHHHHHHHCCC-EEEEcCcchh----hhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 333678889988777 88888888888874 3333333221 112222210 00001111111122233332 22
Q ss_pred HHHHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 411 LTKEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 411 ~~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
.|++|++.||++-|+||+.+++..
T Consensus 89 ----------~i~~ai~~GFtSVM~DgS~lp~ee 112 (286)
T PRK12738 89 ----------DIRRKVHAGVRSAMIDGSHFPFAE 112 (286)
T ss_pred ----------HHHHHHHcCCCeEeecCCCCCHHH
Confidence 357799999999999999987643
No 87
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=32.43 E-value=27 Score=36.92 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=19.6
Q ss_pred HHHhhhcCcceEEEecceeeccC
Q 044432 422 IKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 422 i~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
|++|++.||++-|+||+.+++..
T Consensus 93 i~~ai~~GftSVM~DgS~lp~ee 115 (285)
T PRK07709 93 CKEAIDAGFTSVMIDASHHPFEE 115 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHH
Confidence 34799999999999999887654
No 88
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=32.42 E-value=25 Score=37.09 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=53.2
Q ss_pred ccccccccccc-eeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhh-CCCcccchhHHHhhhh----hh
Q 044432 326 GTVLPSVQRQE-TVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLAR-RGHPVIDADQFLNDIR----AY 399 (584)
Q Consensus 326 ~~~l~~~~~~~-~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~-~g~~~i~~~~~~~~~~----~~ 399 (584)
..+|..-+.++ .|--.|.+..+. +|-.+.=-|+.+. --||...+... +. -|... +...++ ..
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~--~~avi~AAee~~s-PvIlq~~~~~~----~~~~g~~~-----~~~~~~~~a~~~ 74 (288)
T TIGR00167 7 KELLQDAKEEGYAIPAFNINNLET--INAVLEAAAEEKS-PVIIQFSNGAA----KYIAGLGA-----ISAMVKAMSEAY 74 (288)
T ss_pred HHHHHHHHHCCceEEEEEECCHHH--HHHHHHHHHHHCC-CEEEECCcchh----hccCCHHH-----HHHHHHHHHHhc
Confidence 34444444433 677788888766 8877777777776 34444433331 11 12111 111111 11
Q ss_pred -----hhccccCCc-hHHHHHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 400 -----ESLSLQSSD-ARLTKEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 400 -----~~~~~~~~~-~~~~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
=.+-+-|.. .+. |++|++.||++-|+||+.+++..
T Consensus 75 ~~~VPV~lHLDHg~~~e~----------i~~ai~~GftSVMiDgS~lp~ee 115 (288)
T TIGR00167 75 PYGVPVALHLDHGASEED----------CAQAVKAGFSSVMIDGSHEPFEE 115 (288)
T ss_pred cCCCcEEEECCCCCCHHH----------HHHHHHcCCCEEEecCCCCCHHH
Confidence 112233332 222 67799999999999999987643
No 89
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.27 E-value=28 Score=36.73 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=49.9
Q ss_pred eeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCcccchhHHHhhh---hhhhhccccCC-chHHH
Q 044432 337 TVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVIDADQFLNDI---RAYESLSLQSS-DARLT 412 (584)
Q Consensus 337 ~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i~~~~~~~~~---~~~~~~~~~~~-~~~~~ 412 (584)
.|--.|.++.+. +|-.+.=-|+.+. --|+...+..+ ..-|...+ +..+.+.. +.-=.+-+-|. +.+
T Consensus 19 aV~AfN~~n~e~--~~avi~AAee~~s-PvIiq~~~~~~----~~~g~~~~-~~~~~~~A~~~~VPV~lHLDHg~~~e-- 88 (284)
T PRK09195 19 AVPAFNIHNLET--MQVVVETAAELHS-PVIIAGTPGTF----SYAGTEYL-LAIVSAAAKQYHHPLALHLDHHEKFD-- 88 (284)
T ss_pred eEEEEEeCCHHH--HHHHHHHHHHhCC-CEEEEcChhHH----hhCCHHHH-HHHHHHHHHHCCCCEEEECCCCCCHH--
Confidence 577788888766 8877777777773 34444443331 22222221 11111111 11112233333 222
Q ss_pred HHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 413 KEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 413 ~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
.|++|++.||++-|+||+.|++..
T Consensus 89 --------~i~~Ai~~GftSVM~DgS~l~~ee 112 (284)
T PRK09195 89 --------DIAQKVRSGVRSVMIDGSHLPFAQ 112 (284)
T ss_pred --------HHHHHHHcCCCEEEeCCCCCCHHH
Confidence 267799999999999999987643
No 90
>PRK02496 adk adenylate kinase; Provisional
Probab=31.07 E-value=93 Score=29.29 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=23.8
Q ss_pred ceeEeecCCch----hhhhhhhC-CCcccchhHHHhh
Q 044432 364 QNHIFLGSHSD----FLYDLARR-GHPVIDADQFLND 395 (584)
Q Consensus 364 ~n~~~~~~~~~----~~~dl~~~-g~~~i~~~~~~~~ 395 (584)
.+++++|+|.- ...-||.+ |.+.|+.++++..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 45788888754 66677764 9999999888754
No 91
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=31.02 E-value=29 Score=36.63 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=51.7
Q ss_pred ccceeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCcccc--hhHHHhhhhhhhhccccCC-chH
Q 044432 334 RQETVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVID--ADQFLNDIRAYESLSLQSS-DAR 410 (584)
Q Consensus 334 ~~~~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i~--~~~~~~~~~~~~~~~~~~~-~~~ 410 (584)
..-.|--.|.+..+. +|-.++--|+.+. --|+...+..+ ..-|.+.+= +..+.+..+.-=.+-+-|. +.+
T Consensus 14 ~~yAV~AfN~~n~e~--~~avi~AAee~~s-PvIlq~s~~~~----~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e 86 (282)
T TIGR01858 14 GGYAVPAFNIHNLET--IQAVVETAAEMRS-PVILAGTPGTF----KHAGTEYIVALCSAASTTYNMPLALHLDHHESLD 86 (282)
T ss_pred cCCeEEEEEeCCHHH--HHHHHHHHHHhCC-CEEEEeCccHH----hhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 444567778887766 8878888888777 34444444331 111222110 0001111111112233333 223
Q ss_pred HHHHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 411 LTKEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 411 ~~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
. |++|++.||++-|+||+.+++..
T Consensus 87 ~----------i~~ai~~GFtSVM~DgS~lp~ee 110 (282)
T TIGR01858 87 D----------IRQKVHAGVRSAMIDGSHFPFAQ 110 (282)
T ss_pred H----------HHHHHHcCCCEEeecCCCCCHHH
Confidence 2 57899999999999999987654
No 92
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=30.26 E-value=27 Score=36.71 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=18.6
Q ss_pred HHHHhhhcCcceEEEecceeeccC
Q 044432 421 VIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 421 vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
.|++|++.||++-|+||+.+++..
T Consensus 88 ~i~~ai~~GftSVM~DgS~l~~ee 111 (287)
T PF01116_consen 88 DIKRAIDAGFTSVMIDGSALPFEE 111 (287)
T ss_dssp HHHHHHHHTSSEEEEE-TTS-HHH
T ss_pred HHHHHHHhCcccccccCCcCCHHH
Confidence 468899999999999999777543
No 93
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=28.04 E-value=4.5e+02 Score=23.69 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcchhHHHhh
Q 044432 67 FNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGLQAQWLE 146 (584)
Q Consensus 67 YNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGLa~sIIE 146 (584)
.++| -+.++++.++++... +++|.... +++.+.+... +-..+.......|...++..
T Consensus 22 ~g~~-li~~~l~~l~~~~~~----~Ivvv~~~--------------~~~~~~~~~~----~~~~v~~~~~~~G~~~sl~~ 78 (160)
T PF12804_consen 22 GGKP-LIERVLEALREAGVD----DIVVVTGE--------------EEIYEYLERY----GIKVVVDPEPGQGPLASLLA 78 (160)
T ss_dssp TTEE-HHHHHHHHHHHHTES----EEEEEEST--------------HHHHHHHTTT----TSEEEE-STSSCSHHHHHHH
T ss_pred CCcc-HHHHHHHHhhccCCc----eEEEecCh--------------HHHHHHHhcc----CceEEEeccccCChHHHHHH
Confidence 5555 699999999997522 46776654 1233334433 22334444457899999988
Q ss_pred hccCCCCCceEEEEcCCc-eeChhHHHHHHHHHHhh
Q 044432 147 AWWPTSDHEFAFVVEDDL-EVSPLFYKFLRGLIVNY 181 (584)
Q Consensus 147 gwyPts~~e~VIVLEDDL-eVSP~Fy~Ymn~ALl~Y 181 (584)
++.-....+.++|+.=|+ .++|..+..+-.+..+.
T Consensus 79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 863232567788887777 68999999988887653
No 94
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=27.51 E-value=37 Score=36.61 Aligned_cols=95 Identities=13% Similarity=0.189 Sum_probs=50.4
Q ss_pred cccceeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCccc--chhHHHhhhhh-----hhhcccc
Q 044432 333 QRQETVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVI--DADQFLNDIRA-----YESLSLQ 405 (584)
Q Consensus 333 ~~~~~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i--~~~~~~~~~~~-----~~~~~~~ 405 (584)
+.+-.|--.|.+..+. +|-.+.--|..+.- -||...+... ..-|...+ -+..+....+. -=.+-+-
T Consensus 21 ~~~yAV~AfN~~n~e~--~~avi~AAee~~sP-vIlq~s~~~~----~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLD 93 (321)
T PRK07084 21 KGGYAIPAYNFNNMEQ--LQAIIQACVETKSP-VILQVSKGAR----KYANATLLRYMAQGAVEYAKELGCPIPIVLHLD 93 (321)
T ss_pred HCCceEEEEEeCCHHH--HHHHHHHHHHhCCC-EEEEechhHH----hhCCchHHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 3344577788887766 77777667777643 3444433332 11121111 11111111110 1113333
Q ss_pred CC-chHHHHHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 406 SS-DARLTKEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 406 ~~-~~~~~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
|. +.+ .|++|++.||++-|+||+.+++..
T Consensus 94 Hg~~~e----------~i~~ai~~GftSVMiD~S~lp~ee 123 (321)
T PRK07084 94 HGDSFE----------LCKDCIDSGFSSVMIDGSHLPYEE 123 (321)
T ss_pred CCCCHH----------HHHHHHHcCCCEEEeeCCCCCHHH
Confidence 33 223 367899999999999999987644
No 95
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=26.95 E-value=32 Score=24.45 Aligned_cols=11 Identities=55% Similarity=1.002 Sum_probs=9.3
Q ss_pred HHHHHHhhhcC
Q 044432 419 VYVIKKCLEYR 429 (584)
Q Consensus 419 ~~vi~kc~~~~ 429 (584)
.|||+||||.+
T Consensus 16 n~VvQk~le~~ 26 (35)
T PF00806_consen 16 NYVVQKCLEHA 26 (35)
T ss_dssp HHHHHHHHHHS
T ss_pred CHHHHHHHHHC
Confidence 58999999973
No 96
>PRK14528 adenylate kinase; Provisional
Probab=26.73 E-value=1.2e+02 Score=29.17 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=22.6
Q ss_pred cceeEeecCCch----hhhhhh-hCCCcccchhHHHhh
Q 044432 363 SQNHIFLGSHSD----FLYDLA-RRGHPVIDADQFLND 395 (584)
Q Consensus 363 ~~n~~~~~~~~~----~~~dl~-~~g~~~i~~~~~~~~ 395 (584)
|++++++|+|-- +..-|| +-|.++|++++++..
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~ 38 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILRE 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHH
Confidence 467888888754 444444 458888888888743
No 97
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=26.61 E-value=5e+02 Score=25.08 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=62.9
Q ss_pred CCC-chHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccc-cCCCceEEEeecCCcchhHHH
Q 044432 67 FNR-LNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFE-WKFGDKFVHYRTANAGLQAQW 144 (584)
Q Consensus 67 YNR-P~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~-WP~g~vtIi~R~~NlGLa~sI 144 (584)
.+| | -+.++|+.|.++... ++ ++|...+.. ..+.+.++... |. -+++++......|.+.++
T Consensus 28 ~g~~p-li~~~l~~l~~~g~~--~i-i~V~~~~~~------------~~i~~~~~~~~~~~-~~i~~i~~~~~~Gta~al 90 (248)
T PF00483_consen 28 GGKYP-LIDYVLENLANAGIK--EI-IVVVNGYKE------------EQIEEHLGSGYKFG-VKIEYIVQPEPLGTAGAL 90 (248)
T ss_dssp TTEEE-HHHHHHHHHHHTTCS--EE-EEEEETTTH------------HHHHHHHTTSGGGT-EEEEEEEESSSSCHHHHH
T ss_pred cCCCc-chhhhhhhhcccCCc--eE-EEEEeeccc------------cccccccccccccc-ccceeeecccccchhHHH
Confidence 355 5 799999999996542 22 444443321 23445555542 42 156777778888998888
Q ss_pred hhhcc-CCCC--CceEEEEcCCceeChhHHHHHHHHHHh
Q 044432 145 LEAWW-PTSD--HEFAFVVEDDLEVSPLFYKFLRGLIVN 180 (584)
Q Consensus 145 IEgwy-Pts~--~e~VIVLEDDLeVSP~Fy~Ymn~ALl~ 180 (584)
..+-. ..+. .+.++|+-+|+.....|.++++.....
T Consensus 91 ~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~ 129 (248)
T PF00483_consen 91 LQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRES 129 (248)
T ss_dssp HHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHH
T ss_pred HHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcc
Confidence 77631 1111 246999999999999888888777654
No 98
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=2.1e+02 Score=32.51 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=65.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhccccCCCceEEEeecCCcch
Q 044432 61 IIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGFEWKFGDKFVHYRTANAGL 140 (584)
Q Consensus 61 ~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF~WP~g~vtIi~R~~NlGL 140 (584)
.|+||-..-=..|-|+..|.-+-.+. .-.+=+|-+|-.. +.+.+. ..+-+++..|. |-|+|++-+++-||
T Consensus 159 VviVFHNEGws~LmRTVHSVi~RsP~-~~l~eivlvDDfS----dKehLk--ekLDeYv~~fn---GlVkV~Rne~REGL 228 (603)
T KOG3737|consen 159 VVIVFHNEGWSTLMRTVHSVIKRSPR-KYLAEIVLVDDFS----DKEHLK--EKLDEYVKLFN---GLVKVFRNERREGL 228 (603)
T ss_pred EEEEEecCccHHHHHHHHHHHhcCcH-HhhheEEEeccCC----ccHHHH--HHHHHHHHHhc---CEEEEEecchhhhh
Confidence 34455444345789999998874332 2223445555442 223343 34456777774 78889888999999
Q ss_pred hHHHhhhccCCCCCceEEEEcCCceeChhHHHHHHHHH
Q 044432 141 QAQWLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGLI 178 (584)
Q Consensus 141 a~sIIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~AL 178 (584)
.++=.-|- --+.-+-+|.|+-.+||.-++|.=+-.-+
T Consensus 229 I~aRSiGA-~~atGeV~ifLDAHCEVntNWlpPLlAPI 265 (603)
T KOG3737|consen 229 IQARSIGA-QKATGEVLIFLDAHCEVNTNWLPPLLAPI 265 (603)
T ss_pred hhhhccch-hhccccEEEEEecceeeeccccccccccc
Confidence 54322220 01135678999999999998887665554
No 99
>PRK00279 adk adenylate kinase; Reviewed
Probab=26.11 E-value=1.3e+02 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEeecCCch----hhhhhh-hCCCcccchhHHHhh
Q 044432 366 HIFLGSHSD----FLYDLA-RRGHPVIDADQFLND 395 (584)
Q Consensus 366 ~~~~~~~~~----~~~dl~-~~g~~~i~~~~~~~~ 395 (584)
.+++|+|-- +..-|| +.|.+.|++++++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 456666543 455566 458888888777763
No 100
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.84 E-value=39 Score=35.52 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=47.8
Q ss_pred cceeEEEEecccchHHHhhhhhhhcccCcceeEeecCCchhhhhhhhCCCcccc--hhHHHhhhhhhhhccccCCc-hHH
Q 044432 335 QETVLVVSLFGASDAVTRNLLCQFERINSQNHIFLGSHSDFLYDLARRGHPVID--ADQFLNDIRAYESLSLQSSD-ARL 411 (584)
Q Consensus 335 ~~~~~~v~~~~~~~~~~rn~l~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i~--~~~~~~~~~~~~~~~~~~~~-~~~ 411 (584)
+-.|--.|.+..+. +|-.+.--|+.+.- -|+...+... ..-|..++- ...+-+..+.-=.+-+-|.. .+.
T Consensus 12 ~yaV~AfN~~n~e~--~~avi~AAe~~~sP-vIi~~~~~~~----~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~ 84 (276)
T cd00947 12 GYAVGAFNINNLET--LKAILEAAEETRSP-VILQISEGAI----KYAGLELLVAMVKAAAERASVPVALHLDHGSSFEL 84 (276)
T ss_pred CceEEEEeeCCHHH--HHHHHHHHHHhCCC-EEEEcCcchh----hhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 33566677777765 78777777777743 3333333331 112222110 00011111111122233332 222
Q ss_pred HHHHHHHHHHHHHhhhcCcceEEEecceeeccC
Q 044432 412 TKEVLVKVYVIKKCLEYRYSAWVVDANFLPFSN 444 (584)
Q Consensus 412 ~~~~~~~~~vi~kc~~~~y~~~~~~~~~~~~~~ 444 (584)
|++|++.||++-|+||+.+++..
T Consensus 85 ----------i~~ai~~GftSVMiD~S~l~~ee 107 (276)
T cd00947 85 ----------IKRAIRAGFSSVMIDGSHLPFEE 107 (276)
T ss_pred ----------HHHHHHhCCCEEEeCCCCCCHHH
Confidence 34699999999999999987643
No 101
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=25.63 E-value=42 Score=36.60 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHhhhcCcceEEEecceee
Q 044432 422 IKKCLEYRYSAWVVDANFLP 441 (584)
Q Consensus 422 i~kc~~~~y~~~~~~~~~~~ 441 (584)
|++|++.||++-|+||+.++
T Consensus 91 i~~Ai~~GFtSVMiDgS~l~ 110 (347)
T PRK13399 91 CQSAIRSGFTSVMMDGSLLA 110 (347)
T ss_pred HHHHHhcCCCEEEEeCCCCC
Confidence 68899999999999999986
No 102
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.51 E-value=1.5e+02 Score=27.73 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred hhhhhhhC-CCcccchhHHHhh
Q 044432 375 FLYDLARR-GHPVIDADQFLND 395 (584)
Q Consensus 375 ~~~dl~~~-g~~~i~~~~~~~~ 395 (584)
+..-||.+ |.++|++++++..
T Consensus 15 ~a~~La~~~~~~~i~~~~l~~~ 36 (194)
T cd01428 15 QAERLAKKYGLPHISTGDLLRE 36 (194)
T ss_pred HHHHHHHHcCCeEEECcHHHHH
Confidence 45566665 8888888887753
No 103
>cd03576 NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.
Probab=24.47 E-value=54 Score=30.83 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=22.3
Q ss_pred hhhcccCcceeEeecCCchhhhhhhhCCCcccchhHHH
Q 044432 356 CQFERINSQNHIFLGSHSDFLYDLARRGHPVIDADQFL 393 (584)
Q Consensus 356 ~~~~~~~~~n~~~~~~~~~~~~dl~~~g~~~i~~~~~~ 393 (584)
|=-=+.| +|||+||...| ++|| +||...|+
T Consensus 76 CP~lr~g-~~YliMG~v~~-----~gr~--~i~p~SfV 105 (124)
T cd03576 76 CPLLRRG-LNYILMGQVDE-----EGRG--VIPPESFV 105 (124)
T ss_pred CCCcccC-CEEEEEeecCC-----CCCc--ccCCccEE
Confidence 6666778 99999999766 3666 77876554
No 104
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=67 Score=37.43 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=56.6
Q ss_pred cccccccccCCCCCCccccccCcccccccccCCCCCCccccccccccccchhcccccccccccccccccceeEEEEeccc
Q 044432 267 HRDAGVNYGKSAGPDSKLLDESSLDFNILKMQPLSNLKWYDFCFREVFPGRVVKSMDDLGTVLPSVQRQETVLVVSLFGA 346 (584)
Q Consensus 267 h~~aGvh~~~~~~pd~~ll~~~~~~~~~~~~~~~~~l~~yD~~f~ev~p~~v~~~~~~l~~~l~~~~~~~~~~~v~~~~~ 346 (584)
+..+||-=-....+|.-.+.=+++..+...+.. .+||+.||- |..++..-+-||+||.-=...|+.+-+++.--
T Consensus 27 FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY----~YY~~~Fc~--p~~i~~~~EnLGeVl~GDRi~nSPy~~~m~e~ 100 (628)
T KOG1278|consen 27 FYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPY----EYYSLPFCR--PEKIKKQSENLGEVLRGDRIENSPYKFKMLEN 100 (628)
T ss_pred eecCCcCCccCCCCCceEEEEEEeeccccccCc----ccccccccC--ccccCCcccchhceeccCcccCCCceEecccC
Confidence 344554333233344444444444433333333 578877774 66789988999999999999999999999877
Q ss_pred chHHHhhhhhhhc
Q 044432 347 SDAVTRNLLCQFE 359 (584)
Q Consensus 347 ~~~~~rn~l~~~~ 359 (584)
++ |+ .||...
T Consensus 101 ~~--C~-~lC~~k 110 (628)
T KOG1278|consen 101 QP--CE-TLCATK 110 (628)
T ss_pred Cc--ch-hhhccc
Confidence 77 88 889765
No 105
>PRK03839 putative kinase; Provisional
Probab=22.43 E-value=1.3e+02 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=20.5
Q ss_pred eEeecCCch----hhhhhhhC-CCcccchhHHHhh
Q 044432 366 HIFLGSHSD----FLYDLARR-GHPVIDADQFLND 395 (584)
Q Consensus 366 ~~~~~~~~~----~~~dl~~~-g~~~i~~~~~~~~ 395 (584)
-+++|.|-- +-.-||++ |+++||+++++..
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~ 37 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK 37 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh
Confidence 345554432 56667777 9999999998753
No 106
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.36 E-value=52 Score=34.85 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.6
Q ss_pred HHHHhhhcCcceEEEecceeecc
Q 044432 421 VIKKCLEYRYSAWVVDANFLPFS 443 (584)
Q Consensus 421 vi~kc~~~~y~~~~~~~~~~~~~ 443 (584)
.|++|++.||++-|+||+.+++.
T Consensus 89 ~i~~Ai~~GftSVM~DgS~l~~e 111 (283)
T PRK07998 89 DVKQAVRAGFTSVMIDGAALPFE 111 (283)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHH
Confidence 45679999999999999988764
No 107
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=21.69 E-value=2.3e+02 Score=27.47 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=18.5
Q ss_pred EeecCCch----hhhhhh-hCCCcccchhHHHhh
Q 044432 367 IFLGSHSD----FLYDLA-RRGHPVIDADQFLND 395 (584)
Q Consensus 367 ~~~~~~~~----~~~dl~-~~g~~~i~~~~~~~~ 395 (584)
+++|+|-- +..-|| +-|.++|++++++..
T Consensus 3 ~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 3 VLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHH
Confidence 45555433 445565 468888888887753
No 108
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=21.33 E-value=6.8e+02 Score=23.43 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=57.6
Q ss_pred CCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhcc-ccCCCceEEEeecCCcchhHHHh
Q 044432 67 FNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDGF-EWKFGDKFVHYRTANAGLQAQWL 145 (584)
Q Consensus 67 YNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~gF-~WP~g~vtIi~R~~NlGLa~sII 145 (584)
.+|| -+.++|++|.++.. .+++|.+.... +.+.+.+... .|. ..+.++......|.+.++.
T Consensus 27 ~g~p-li~~~l~~l~~~g~----~~i~vv~~~~~------------~~i~~~~~~~~~~~-~~i~~~~~~~~~g~~~al~ 88 (217)
T cd04181 27 AGKP-ILEYIIERLARAGI----DEIILVVGYLG------------EQIEEYFGDGSKFG-VNIEYVVQEEPLGTAGAVR 88 (217)
T ss_pred CCee-HHHHHHHHHHHCCC----CEEEEEeccCH------------HHHHHHHcChhhcC-ceEEEEeCCCCCccHHHHH
Confidence 5676 69999999999642 24666665421 2344444432 242 2455555555678888888
Q ss_pred hhccCCCCCceEEEEcCCceeChhHHHHHH
Q 044432 146 EAWWPTSDHEFAFVVEDDLEVSPLFYKFLR 175 (584)
Q Consensus 146 EgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn 175 (584)
.+..-. ..+.++|+--|....+.+.+.+.
T Consensus 89 ~~~~~~-~~~~~lv~~~D~~~~~~~~~~~~ 117 (217)
T cd04181 89 NAEDFL-GDDDFLVVNGDVLTDLDLSELLR 117 (217)
T ss_pred Hhhhhc-CCCCEEEEECCeecCcCHHHHHH
Confidence 773111 35678888888889998877764
No 109
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=21.11 E-value=54 Score=35.80 Aligned_cols=19 Identities=5% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHhhhcCcceEEEeccee
Q 044432 422 IKKCLEYRYSAWVVDANFL 440 (584)
Q Consensus 422 i~kc~~~~y~~~~~~~~~~ 440 (584)
|++|++.||++-|+||+.+
T Consensus 89 i~~Ai~~GFtSVMiDgS~l 107 (347)
T TIGR01521 89 CQRAIQLGFTSVMMDGSLR 107 (347)
T ss_pred HHHHHHcCCCEEeecCcCC
Confidence 6779999999999999997
No 110
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=20.89 E-value=80 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=20.1
Q ss_pred cceeeccCCccccccCCCCceeecccceEEEEec
Q 044432 437 ANFLPFSNDLFLEPIDATSDFYYGESSKLLFVKS 470 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 470 (584)
...+.+|+ ...|+.+|+..++.|+|+
T Consensus 163 ~~~i~iGD--------~~~D~~aa~~~d~~~ar~ 188 (188)
T TIGR01489 163 QHIIYIGD--------GVTDVCPAKLSDVVFAKE 188 (188)
T ss_pred ceEEEECC--------CcchhchHhcCCccccCC
Confidence 44555655 468999999999999885
No 111
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=20.66 E-value=1e+03 Score=25.31 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=68.0
Q ss_pred CCCceeEEEEEEcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhhc---cccCCCceE
Q 044432 54 HSSNFTLIIKVLTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLDG---FEWKFGDKF 130 (584)
Q Consensus 54 ~~~~m~I~IvVfaYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~g---F~WP~g~vt 130 (584)
..-+=+++|....-|-...+.+-++-|.+-+|+...+.|-+-++..+.-+ ..++...+.++-++. ..=+|+.++
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d---~t~~~l~~~~~~~q~~~~~~~~F~~it 97 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFD---NTLKILEAALKKLQSHGPESKRFRSIT 97 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhH---HHHHHHHHHHHHHhccCcccCCcceEE
Confidence 33345578888888878889999999999999998999977776654211 112211222222332 223567777
Q ss_pred EEeecCCc--c-------------hh-------HHHh-hhccCCC-CCceEEEEcCCceeChh
Q 044432 131 VHYRTANA--G-------------LQ-------AQWL-EAWWPTS-DHEFAFVVEDDLEVSPL 169 (584)
Q Consensus 131 Ii~R~~Nl--G-------------La-------~sII-EgwyPts-~~e~VIVLEDDLeVSP~ 169 (584)
|.++.-.. | .+ ++++ .+ --. .++.|+.|+-|++-+|-
T Consensus 98 Il~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~--aL~p~~swVlWlDaDIv~~P~ 158 (269)
T PF03452_consen 98 ILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSS--ALGPWHSWVLWLDADIVETPP 158 (269)
T ss_pred EEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHh--hcCCcccEEEEEecCcccCCh
Confidence 77654321 1 12 2222 22 011 58899999999998885
No 112
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=20.52 E-value=8.2e+02 Score=25.65 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=57.6
Q ss_pred EcCCCchHHHHHHHHHhcCCCCCCceeEEEEecCCCCCcCCCcchhhHHHHHHHhh-ccccCCCceEEEeecCCcchhHH
Q 044432 65 LTFNRLNSLSRCLHSLSAADYLTDRVHLHVYVDHSAPLADQSSSESDSRAILRFLD-GFEWKFGDKFVHYRTANAGLQAQ 143 (584)
Q Consensus 65 faYNRP~sLkRLL~SL~~AdY~gd~v~L~IflD~pk~~s~~~~kVdevrellk~L~-gF~WP~g~vtIi~R~~NlGLa~s 143 (584)
.+++|| -+...|..|.++.. . ++.|-+.+.. - ..+.+.+. +-.|.- +++....+...|++.+
T Consensus 30 pv~gkP-mI~~~l~~l~~aGi--~--~I~ii~~~~~--------~---~~~~~~l~~g~~~g~-~i~y~~q~~~~Gta~A 92 (292)
T PRK15480 30 PIYDKP-MIYYPLSTLMLAGI--R--DILIISTPQD--------T---PRFQQLLGDGSQWGL-NLQYKVQPSPDGLAQA 92 (292)
T ss_pred EECCEE-HHHHHHHHHHHCCC--C--EEEEEecCCc--------h---HHHHHHHcCccccCc-eeEEEECCCCCCHHHH
Confidence 347887 79999999999743 2 3444433221 1 22334443 334542 4556666778899988
Q ss_pred HhhhccCCCCCceEEEEcCCceeChhHHHHHHHH
Q 044432 144 WLEAWWPTSDHEFAFVVEDDLEVSPLFYKFLRGL 177 (584)
Q Consensus 144 IIEgwyPts~~e~VIVLEDDLeVSP~Fy~Ymn~A 177 (584)
+..+-.-.++.+.++|+=|++.....|=..+...
T Consensus 93 l~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~ 126 (292)
T PRK15480 93 FIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 126 (292)
T ss_pred HHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHH
Confidence 8766211224568999988887666655554433
Done!