Query 044433
Match_columns 303
No_of_seqs 184 out of 1493
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.5E-34 5.4E-39 266.2 30.8 237 53-290 14-254 (455)
2 PRK00187 multidrug efflux prot 100.0 8.5E-32 1.8E-36 250.8 32.1 237 53-290 7-249 (464)
3 PRK10367 DNA-damage-inducible 100.0 1.4E-31 3.1E-36 247.5 30.9 246 53-299 6-258 (441)
4 PRK10189 MATE family multidrug 100.0 3.3E-31 7.1E-36 247.3 32.9 243 47-290 19-272 (478)
5 PRK09575 vmrA multidrug efflux 100.0 1.6E-30 3.4E-35 241.8 30.4 236 53-290 9-247 (453)
6 PRK01766 multidrug efflux prot 100.0 6.5E-29 1.4E-33 231.4 31.5 237 53-290 9-252 (456)
7 KOG1347 Uncharacterized membra 100.0 1.5E-27 3.2E-32 220.2 23.9 246 53-300 25-274 (473)
8 TIGR00797 matE putative efflux 99.9 2.1E-24 4.7E-29 193.5 29.2 226 64-290 1-229 (342)
9 PRK00187 multidrug efflux prot 99.9 1.1E-24 2.3E-29 203.2 26.9 204 53-257 233-443 (464)
10 PRK01766 multidrug efflux prot 99.9 2.5E-24 5.4E-29 200.6 26.5 205 53-258 236-442 (456)
11 PRK10189 MATE family multidrug 99.9 8.2E-24 1.8E-28 197.6 28.9 209 53-262 256-466 (478)
12 COG0534 NorM Na+-driven multid 99.9 1.5E-23 3.2E-28 194.5 27.6 208 53-262 238-447 (455)
13 PRK09575 vmrA multidrug efflux 99.9 5.9E-23 1.3E-27 191.1 27.3 203 53-258 231-436 (453)
14 TIGR01695 mviN integral membra 99.9 2.6E-22 5.7E-27 189.1 29.6 228 53-290 220-452 (502)
15 PRK10367 DNA-damage-inducible 99.9 1.2E-19 2.5E-24 168.2 27.3 199 53-258 229-431 (441)
16 PF03023 MVIN: MviN-like prote 99.9 8.4E-19 1.8E-23 162.7 31.2 206 53-260 195-405 (451)
17 TIGR02900 spore_V_B stage V sp 99.9 9.6E-19 2.1E-23 164.3 28.2 201 53-258 222-434 (488)
18 PF01554 MatE: MatE; InterPro 99.8 2E-21 4.4E-26 155.6 5.3 160 64-224 1-162 (162)
19 COG0728 MviN Uncharacterized m 99.8 1.7E-17 3.7E-22 153.0 30.6 229 53-290 229-462 (518)
20 TIGR02900 spore_V_B stage V sp 99.8 1.8E-17 4E-22 155.6 27.3 228 59-290 2-238 (488)
21 PRK15099 O-antigen translocase 99.8 1.9E-17 4.1E-22 152.6 26.4 197 53-256 212-410 (416)
22 PRK10459 colanic acid exporter 99.8 6.9E-17 1.5E-21 152.0 27.6 199 53-257 204-404 (492)
23 TIGR01695 mviN integral membra 99.8 8.3E-16 1.8E-20 145.0 28.1 226 58-290 2-236 (502)
24 PRK15099 O-antigen translocase 99.7 9.6E-16 2.1E-20 141.3 25.1 224 58-290 3-228 (416)
25 COG2244 RfbX Membrane protein 99.7 2.1E-15 4.5E-20 141.5 25.9 185 53-243 210-396 (480)
26 TIGR00797 matE putative efflux 99.5 3.9E-13 8.4E-18 120.5 17.5 128 53-181 213-341 (342)
27 PF03023 MVIN: MviN-like prote 99.4 1.2E-09 2.6E-14 101.7 27.9 199 86-290 5-211 (451)
28 KOG1347 Uncharacterized membra 99.2 4.8E-11 1E-15 110.8 8.7 207 53-260 244-454 (473)
29 PF01943 Polysacc_synt: Polysa 99.1 2E-07 4.4E-12 80.3 27.1 216 59-290 2-218 (273)
30 COG0728 MviN Uncharacterized m 99.1 5.5E-07 1.2E-11 83.9 29.5 231 53-290 8-245 (518)
31 PF14667 Polysacc_synt_C: Poly 98.9 1.9E-08 4.1E-13 78.8 12.5 81 178-260 2-82 (146)
32 PRK10459 colanic acid exporter 98.9 5E-07 1.1E-11 85.2 24.2 214 56-290 5-220 (492)
33 PF13440 Polysacc_synt_3: Poly 98.8 1.4E-05 3E-10 68.0 26.0 167 75-255 3-170 (251)
34 COG2244 RfbX Membrane protein 98.7 6.2E-06 1.3E-10 77.5 21.4 221 53-290 3-226 (480)
35 PF07260 ANKH: Progressive ank 98.7 8.7E-05 1.9E-09 64.1 25.9 236 53-297 8-258 (345)
36 PF04506 Rft-1: Rft protein; 98.6 2E-05 4.4E-10 74.7 22.0 203 55-258 252-470 (549)
37 KOG2864 Nuclear division RFT1 98.0 0.00058 1.3E-08 61.8 16.9 201 56-258 239-449 (530)
38 PF01943 Polysacc_synt: Polysa 97.7 0.00041 8.8E-09 59.5 10.3 71 53-124 202-273 (273)
39 PF13440 Polysacc_synt_3: Poly 96.7 0.017 3.6E-07 49.0 10.0 67 57-123 184-251 (251)
40 COG4267 Predicted membrane pro 87.6 22 0.00047 32.3 23.1 139 104-258 72-211 (467)
41 COG4267 Predicted membrane pro 82.1 40 0.00087 30.7 14.1 113 130-246 320-434 (467)
42 PF02487 CLN3: CLN3 protein; 49.6 1.6E+02 0.0035 27.2 9.4 25 53-77 240-264 (402)
43 PRK03612 spermidine synthase; 48.6 2.5E+02 0.0055 26.9 21.6 48 206-255 150-197 (521)
44 PF04505 Dispanin: Interferon- 46.3 96 0.0021 21.4 6.7 36 116-151 40-75 (82)
45 PF05313 Pox_P21: Poxvirus P21 45.2 72 0.0016 25.7 5.6 27 232-258 135-161 (189)
46 TIGR00927 2A1904 K+-dependent 36.9 39 0.00085 34.6 3.6 35 117-151 986-1020(1096)
47 KOG2234 Predicted UDP-galactos 32.0 1.1E+02 0.0024 27.5 5.3 26 265-290 78-103 (345)
48 PF07260 ANKH: Progressive ank 28.8 1.8E+02 0.0039 26.0 5.9 35 53-87 232-267 (345)
49 COG4536 CorB Putative Mg2+ and 28.3 4.4E+02 0.0096 24.2 8.3 69 221-293 77-146 (423)
50 PF01102 Glycophorin_A: Glycop 27.4 82 0.0018 23.7 3.2 23 235-257 68-90 (122)
51 TIGR00383 corA magnesium Mg(2+ 27.3 3.6E+02 0.0079 23.6 8.0 14 247-260 304-317 (318)
52 PF04172 LrgB: LrgB-like famil 24.6 4.2E+02 0.009 22.1 17.2 94 53-169 68-163 (215)
53 PF03904 DUF334: Domain of unk 24.6 4.3E+02 0.0092 22.3 8.1 41 127-167 141-181 (230)
54 PRK11085 magnesium/nickel/coba 24.3 3.2E+02 0.0069 24.3 6.9 14 247-260 302-315 (316)
55 TIGR00659 conserved hypothetic 23.9 4.4E+02 0.0096 22.2 18.3 94 53-169 78-173 (226)
56 KOG2082 K+/Cl- cotransporter K 23.0 8.2E+02 0.018 25.0 10.2 107 56-168 115-235 (1075)
57 PRK10739 putative antibiotic t 21.8 4.5E+02 0.0098 21.5 10.8 66 106-176 12-77 (197)
58 PF05297 Herpes_LMP1: Herpesvi 20.3 34 0.00074 29.7 0.0 25 197-221 128-152 (381)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.5e-34 Score=266.24 Aligned_cols=237 Identities=19% Similarity=0.252 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
++.|+++++++|.+++++.+.+++.+|+.++||+|++++|+.++++++.. +.+.+..+++.+.++++||++|+||++++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 68899999999999999999999999999999999999999999999999 55899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA 211 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 211 (303)
++..++++.++++.+++.. +.+++.++++.+++.++++.+.+.+|+++..++.|+..++.+..+.+|+.||+|.+++++
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~ 172 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL 172 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 9999999999999997776 669999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cC-CCchhHHHHHHHHHHHHHHHHHHHHHhCccc-cccccCCCHHhhhChHHHHHHHHHHHH
Q 044433 212 AGAFLLHIVLTWIAVYV-LK-FGLMGIALTLSLSWWFLVIINALYIVLSPSC-KETWTGLSVKAFTGICPYFKLTVASAV 288 (303)
Q Consensus 212 ~~~~~~~i~~~~~li~~-~~-~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~ 288 (303)
+++.++|+++||+|++. ++ +|+.|+|+||.+++++.+++..++++++++. .....+..+++++.+++++++|.|.++
T Consensus 173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~ 252 (455)
T COG0534 173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL 252 (455)
T ss_pred HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence 99999999999999999 68 9999999999999999999999999988652 222233434557899999999999999
Q ss_pred HH
Q 044433 289 ML 290 (303)
Q Consensus 289 ~~ 290 (303)
+.
T Consensus 253 ~~ 254 (455)
T COG0534 253 ES 254 (455)
T ss_pred HH
Confidence 98
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=8.5e-32 Score=250.83 Aligned_cols=237 Identities=21% Similarity=0.296 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
++.|+++++++|.++++++..+.+.+|+.+++++|++++|+++++.++.+ +.+.+..|++++..+++||++|+||+|++
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~ 85 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDIEGA 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 68999999999999999999999999999999999999999999999988 45788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAA 212 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 212 (303)
++..++++.++++++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++++++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 165 (464)
T PRK00187 86 TRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISL 165 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999988876655789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc--cccCCCHHhhhChHHHHHHHHHH
Q 044433 213 GAFLLHIVLTWIAVYVL----KFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTVAS 286 (303)
Q Consensus 213 ~~~~~~i~~~~~li~~~----~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ 286 (303)
++.++|+++||+|++.+ ++|+.|+|+||.++++...+...++++++++.++ .+++..+..++.+++++|+++|.
T Consensus 166 ~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~ 245 (464)
T PRK00187 166 AGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPI 245 (464)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhH
Confidence 99999999999999863 4899999999999998888777667765433221 12222233466789999999999
Q ss_pred HHHH
Q 044433 287 AVML 290 (303)
Q Consensus 287 ~~~~ 290 (303)
+++.
T Consensus 246 ~~~~ 249 (464)
T PRK00187 246 GGTY 249 (464)
T ss_pred HHHH
Confidence 9987
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.4e-31 Score=247.49 Aligned_cols=246 Identities=19% Similarity=0.194 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHL-GALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~-g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
++.|+++++++|.++++++..+++.+|+.++|++ |++++|+.+++.++.+ +.+.+..+++.+.++++||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATS-FLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 5689999999999999999999999999999997 6779999999999998 4588889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 132 MGIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
+++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..+.++++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988744 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccccc-ccCCCHHhhhChHHHHHHHHHHHHH
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKET-WTGLSVKAFTGICPYFKLTVASAVM 289 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (303)
++++.++|+++|++|++.+++|+.|+++||.+++++.+++..++++++++.++. .+.++.+.++.+++++|++.|.++.
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 999999999999999998889999999999999999888877777654322211 1111111124678999999999987
Q ss_pred H----HHHHHHhhh
Q 044433 290 L----WFVQILPPL 299 (303)
Q Consensus 290 ~----~~~~~~~~~ 299 (303)
. +.+.+.+.+
T Consensus 245 ~~~~~~~~~~~~~~ 258 (441)
T PRK10367 245 SLLLQLCFGAITVL 258 (441)
T ss_pred HHHHHHHHHHHHHH
Confidence 6 344444433
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.3e-31 Score=247.33 Aligned_cols=243 Identities=11% Similarity=0.156 Sum_probs=213.8
Q ss_pred chhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhc
Q 044433 47 WPRLFG-WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYG 125 (303)
Q Consensus 47 ~~~~~~-~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g 125 (303)
++|.+| +..|+++++++|.++++++..+++.+|+.++|++|++++|+++++.++.+ +.+.+..+++++.++++||++|
T Consensus 19 ~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~G 97 (478)
T PRK10189 19 KRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLG 97 (478)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 444443 56899999999999999999999999999999999999999999999988 5588999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Q 044433 126 AKKYAAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMG--QSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQN 202 (303)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 202 (303)
+||+|++++..++++.+++.++++.+ +.+.+.++++.+++ .|+|+.+.+.+|+++..++.|+..+..+.++++|+.|
T Consensus 98 a~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G 177 (478)
T PRK10189 98 KRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAG 177 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999887 45778899999984 6999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHHHHhC-c-cccccccC-CCHHhhhC
Q 044433 203 IVNPLASMAAGAFLLHIVLTWIAVYVL----KFGLMGIALTLSLSWWFLVIINALYIVLS-P-SCKETWTG-LSVKAFTG 275 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~~li~~~----~~G~~Gaalat~~s~~~~~~~~~~~l~~~-~-~~~~~~~~-~~~~~~~~ 275 (303)
|++.++++++++.++|++++++|++.+ ++|+.|+|+|+.+++++..++..+++.++ + ..+..+++ +.+.+++.
T Consensus 178 ~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
T PRK10189 178 NTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAI 257 (478)
T ss_pred chHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHH
Confidence 999999999999999999999999863 79999999999999999888777666543 1 12222222 22234678
Q ss_pred hHHHHHHHHHHHHHH
Q 044433 276 ICPYFKLTVASAVML 290 (303)
Q Consensus 276 ~~~~~~~~~p~~~~~ 290 (303)
+++++++|+|.++..
T Consensus 258 ~~~il~iG~P~~~~~ 272 (478)
T PRK10189 258 IWEVMGIGIPASIES 272 (478)
T ss_pred HHHHHHHhccHHHHH
Confidence 999999999999987
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.6e-30 Score=241.78 Aligned_cols=236 Identities=21% Similarity=0.220 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
+..|+++++++|.+++++...+++++|+.++|+ .|++++|+++++.++.+ ....+..+++.+.+++++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIG-IILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 467999999999999999999999999999999 59999999999999988 4477888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 132 MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
+++..++++.++.+++++.. +++.+.++++.+++.|+++.+.+.+|+++..++.++..+....++++|+.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999887 55888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc-cccCCCHHhhhChHHHHHHHHHHHHH
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE-TWTGLSVKAFTGICPYFKLTVASAVM 289 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (303)
++.+.++|+++|++|++.+++|+.|+++|+.+++++..++..++++++++..+ ..+.+ +.+++.+++++++|.|.+++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888999999999999999999887777765433222 11222 23456789999999999999
Q ss_pred H
Q 044433 290 L 290 (303)
Q Consensus 290 ~ 290 (303)
.
T Consensus 247 ~ 247 (453)
T PRK09575 247 Y 247 (453)
T ss_pred H
Confidence 8
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.97 E-value=6.5e-29 Score=231.38 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++++++|.++++++..+.+.+|+.+++++|++++++++.+.++.. ....+..|++.+..|.+||++|+||+|++
T Consensus 9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 68999999999999999999999999999999999999999999998877 44778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA 211 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 211 (303)
++..++++.+++++++++.++ +.+.++++.+++.|+++.+.+..|+++..++.++..+..+.++++|+.||++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999888744 7778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc--cccCCCHHhhhChHHHHHHHHH
Q 044433 212 AGAFLLHIVLTWIAVYV----LKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTVA 285 (303)
Q Consensus 212 ~~~~~~~i~~~~~li~~----~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p 285 (303)
+++.++|+++++++++. .++|+.|+++||.+++++..++..++++++++.++ .+.++.++.++.+++++++++|
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P 247 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLP 247 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccch
Confidence 99999999999999864 25899999999999999999988888776543321 2222233446778999999999
Q ss_pred HHHHH
Q 044433 286 SAVML 290 (303)
Q Consensus 286 ~~~~~ 290 (303)
..++.
T Consensus 248 ~~~~~ 252 (456)
T PRK01766 248 IGLAI 252 (456)
T ss_pred HHHHH
Confidence 99887
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=220.16 Aligned_cols=246 Identities=39% Similarity=0.631 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
.+.|++++++.|..+..+.+++.+++++.++||+|+.++|+.++++...+++.+.+..|+..+..|+.+|++|+++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 78899999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAA 212 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 212 (303)
..+.+++..+....++|...++.+.++++..+++++++...+..|.++..+..+.......+..++|++++..+..++..
T Consensus 105 g~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~ 184 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGL 184 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH--
Q 044433 213 GAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML-- 290 (303)
Q Consensus 213 ~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-- 290 (303)
.+.++|+++++++++.+++|..|++++..++++........+..... +.+.|..++++ +++|+++++.++|+++|.
T Consensus 185 ~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 185 VALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999999888775 77889999988 999999999999999998
Q ss_pred --HHHHHHhhhh
Q 044433 291 --WFVQILPPLI 300 (303)
Q Consensus 291 --~~~~~~~~~~ 300 (303)
|.+|+++++.
T Consensus 263 E~w~~eil~l~~ 274 (473)
T KOG1347|consen 263 EWWAYEILVLLA 274 (473)
T ss_pred HHHHHHHHHHHH
Confidence 8899988763
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.94 E-value=2.1e-24 Score=193.49 Aligned_cols=226 Identities=26% Similarity=0.454 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 044433 64 ASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLH 143 (303)
Q Consensus 64 P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~ 143 (303)
|.++++++..+...+|+.+++++|++++++++.+.++.+ ....+..+++++..|.++|++|++|+|++++..+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999888 5588899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 044433 144 LGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLT 222 (303)
Q Consensus 144 ~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~ 222 (303)
..++++.+ +++.+.+++..+++.+++..+.+..|+++++++.++.+++.+..+++|+.||++.+.+.++++.++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 99999988 45788899999988788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433 223 WIAVY-VLK-FGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290 (303)
Q Consensus 223 ~~li~-~~~-~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (303)
+++++ .++ +|+.|+++++.+++++..++..++.+|+++.+..|++..+..++.++++++.+.|..+..
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~ 229 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRV 229 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHH
Confidence 99998 667 889999999999999999888887776444433332222334567899999999999987
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=1.1e-24 Score=203.25 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++|+++|.++++........+|+.+++++|++++|+++++.++.+ +.+.+..|++.+.+++++|++|+||+|++
T Consensus 233 ~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~-l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~ 311 (464)
T PRK00187 233 AALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVS-VAFMVPVGLSYAVTMRVGQHYGAGRLLEA 311 (464)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 67899999999999999999999999999999999999999999999999 56889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC--CH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ--SE---SIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNP 206 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 206 (303)
++..+.++.++.+.+++.+ +++.+.+++.+++.. ++ |+.+.+..|+++.+++.++.+++.+..+++||.||++.
T Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~ 391 (464)
T PRK00187 312 RRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDART 391 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHH
Confidence 9999999999999998887 558889999999953 33 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433 207 LASMAAGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL 257 (303)
Q Consensus 207 ~~~~~~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~ 257 (303)
++++++++. ++|+++++++.+.+++|+.|+|+++.+++++..++.....++
T Consensus 392 ~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 392 TFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 999999999999888999999999999999888776665543
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.94 E-value=2.5e-24 Score=200.61 Aligned_cols=205 Identities=16% Similarity=0.100 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++++++|..+++..+.+...+++.+++++|++++|+++++.++.+ +.+.+..|++.+.++.++|++|+||++++
T Consensus 236 ~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~ 314 (456)
T PRK01766 236 AVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSS-LLFMLPLSLAMALTIRVGFELGAGRTLDA 314 (456)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 67899999999999999999999999999999999999999999999999 45888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA 211 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 211 (303)
++..+.++.++..++++.. +++.+.+++..+|..|+++.+.+..|+++..+..++.+++.+.++++||.||++.+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 394 (456)
T PRK01766 315 RQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFIT 394 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHH
Confidence 9999999999999999887 558889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 212 AGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 212 ~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
+++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++.
T Consensus 395 ~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 395 FIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 7899999999887789999999999999999999888777654
No 11
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=8.2e-24 Score=197.64 Aligned_cols=209 Identities=15% Similarity=0.032 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+.+|+++++++|..+++++..+...+.+.+++++|++++|+++++.++.+ +.+.+..|++++.+++++|++|+||.|++
T Consensus 256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~-~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a 334 (478)
T PRK10189 256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAA-LINLPGNALGSASTIITGTRLGKGQIAQA 334 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 68899999999999999999999999999999999999999999999999 55889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA 211 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 211 (303)
++..+.+..++.+.++.++ +++.+++++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~ 414 (478)
T PRK10189 335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVS 414 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHH
Confidence 9999999999999998887 558889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 044433 212 AGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCK 262 (303)
Q Consensus 212 ~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~ 262 (303)
+++. ++.+++.+++...+++|+.|.|++..+++.+..++..+.+++.+|.+
T Consensus 415 ~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 415 MLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9986 77789999988777899999999999999999988888777666555
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=1.5e-23 Score=194.49 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++++++|..+++++......+-+.+++++|++.+|+++++.++.+ +.+++..|++++.+++++|++|+||+|++
T Consensus 238 ~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a 316 (455)
T COG0534 238 KLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIAS-FIFMPPFGIAQAVTILVGQNLGAGNYKRA 316 (455)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 78999999999999999999999999999999999999999999999999 56999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA 211 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 211 (303)
++..+.+..++..+++... +++++++++..+|..++++.+.+..++.+.....++.+.+.+..+++||.||++.+++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~ 396 (455)
T COG0534 317 RRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIIS 396 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999998887 558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 044433 212 AGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCK 262 (303)
Q Consensus 212 ~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~ 262 (303)
+++. .+.+++.+++.+.. +|..|.|++..+++.+..+...+++++.+|.+
T Consensus 397 ~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (455)
T COG0534 397 LLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR 447 (455)
T ss_pred HHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9987 66789999998876 99999999999999999999998888765443
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=5.9e-23 Score=191.07 Aligned_cols=203 Identities=15% Similarity=0.183 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGA-LELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~-~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
+..|++++++.|..+++....+...+.+.+++++|+ +++|+++++.++.+ +.+.+..|++.+.++++||++|+||+|+
T Consensus 231 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvg~~~Ga~~~~~ 309 (453)
T PRK09575 231 SLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMV-LYYLVAEGIAEGMQPPVSYYFGARQYDN 309 (453)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCChHH
Confidence 578999999999999999999999999999999885 68999999999998 5588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 044433 132 MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ-SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLAS 209 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 209 (303)
+++..+.++.+++..+++.+ +++.+.+++..+|.. |+|+.+.+..|+++.+++.++.+++.+..+++||.||++.+++
T Consensus 310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 389 (453)
T PRK09575 310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF 389 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988 557799999999985 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 210 MAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 210 ~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
.++...++|++..+++... +|+.|+|+++.+++++..++..++++++
T Consensus 390 ~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 390 ISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9998888899999999776 7999999999999999888777766553
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.92 E-value=2.6e-22 Score=189.13 Aligned_cols=228 Identities=14% Similarity=0.045 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|++++++.|..+++....+...+|+.+.+.+|++++++++.+.++.++....+..+++++..|.++|++|+||+++.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 67899999999999999999999999999866699999999999999988553446788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ----SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPL 207 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 207 (303)
++..+++..+...+++|++ .+..+++++..++.+ +++....+..++++++++.++.+++..+.+.+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 9999999999999999998 458889999988765 55778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHH
Q 044433 208 ASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASA 287 (303)
Q Consensus 208 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 287 (303)
++.++.+.++|+++++++++. +|..|+|+|+.+++.+..++..++++|+.... +..+..+.+.|..+++.
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~as~ 449 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGI--------LPFGVLKVLAKLVIASA 449 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC--------CchHHHHHHHHHHHHHH
Confidence 999999999999999999887 89999999999999999988887776652110 11233455666666666
Q ss_pred HHH
Q 044433 288 VML 290 (303)
Q Consensus 288 ~~~ 290 (303)
+|.
T Consensus 450 ~m~ 452 (502)
T TIGR01695 450 IIG 452 (502)
T ss_pred HHH
Confidence 664
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=1.2e-19 Score=168.16 Aligned_cols=199 Identities=15% Similarity=0.061 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++|++.|..+++.+......+-+.+++++|++++|+++++.++.+ +.+.+..|++++.+++++|++|+||+|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~-~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLT-FTAYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 46899999999999999999999999999999999999999999999999 55999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC---CchHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQN---IVNPLA 208 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~ 208 (303)
++..+.+..++.++++..+ +++.+++++..+|..|+|+.+.+..++++.++..+.........++++|.+ |++.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9999999999999999888 457788999999999999999999999998876333224444444555555 599999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 209 SMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 209 ~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
++++++..+ ..+..+. +|..|.|++..+++.+..++..+..+++
T Consensus 388 ~~~~~~~~~----~~~~~~~--~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 388 AVAAAGFAL----TLLTLPW--LGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHH----HHHHHHH--cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887542 2222233 7999999999999999988887765544
No 16
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.86 E-value=8.4e-19 Score=162.74 Aligned_cols=206 Identities=15% Similarity=0.091 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
++.|++++...|.+++....++..++|+.+.+.+++..+++++.+.++.+.+...+..++++...|..++...+||.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 56899999999999999999999999999999999999999999999999776778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ----SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPL 207 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 207 (303)
++..++.+...+.+.+|++ .+..+++|+.+++.+ +.+-.+.....+.+++++.|+.++...+...+.+.||+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 9999999999999999998 558899999977752 45557788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcc
Q 044433 208 ASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPS 260 (303)
Q Consensus 208 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~ 260 (303)
++.++++.++|++++.++.+. +|..|.++|+.++.++..++..+.++|+..
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998 999999999999999999999998887633
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.85 E-value=9.6e-19 Score=164.31 Aligned_cols=201 Identities=16% Similarity=0.113 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------hHHHHH----HHHHHHHHHHHHHHHHhhHhhHHHHHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGA------LELAGA----SIASVGIQGLAYGIMLGMASAVQTICG 121 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~------~~laa~----~~a~~~~~~~~~~~~~~l~~a~~~~is 121 (303)
+..|+++++++|.+++++...+.+.+|+.++++ +++ ++.+.+ +.+.++.++. ..+..+++.+..|.++
T Consensus 222 ~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 222 ALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999987 321 222222 2445566644 5677899999999999
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044433 122 QAYGAKKYAAMGIICQRAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQA 200 (303)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 200 (303)
|++|+||+++.++..+++..+...+++|..+ +..++++++.++.+++ .+..+++++++..++..++....+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 376 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQG 376 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999884 5788899998887554 3567899999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 201 QNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 201 ~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
.||+|.+++.++.+.++|++++++++...++|+.|+++|+.+++.+..++..+..+|.
T Consensus 377 ~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 377 LGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998832338999999999999999999988888664
No 18
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.84 E-value=2e-21 Score=155.59 Aligned_cols=160 Identities=20% Similarity=0.319 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 044433 64 ASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLH 143 (303)
Q Consensus 64 P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~ 143 (303)
|..+++++..+.+.+|+.+++++|++++++++++.++.+ ....+..|++++..+.+||++|++|+|++++..++++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~-~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFS-ILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhhcccccccccceeecccccccccccccccccccccc
Confidence 889999999999999999999999999999999999999 5588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHH
Q 044433 144 LGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAF-LLHIVL 221 (303)
Q Consensus 144 ~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~~ 221 (303)
.+++++..++ +.+.+++..+++.|+++.+.+.+|+++..++.++..+.....+++|+.||++.+++.++.+. ++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999855 88889999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 044433 222 TWI 224 (303)
Q Consensus 222 ~~~ 224 (303)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 19
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.83 E-value=1.7e-17 Score=153.00 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
...|++++...|..++....++..++|+.+.+.+.+..++.+..+.++.+.+.-.+..++++...|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 57899999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ----SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPL 207 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 207 (303)
++..+.+++++...++|.. .+..+++|+...+.+ +++-.....+.+..+..+.++..+..++...+.+++|+|+|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999999998 558899999977643 34445677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHH
Q 044433 208 ASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASA 287 (303)
Q Consensus 208 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 287 (303)
+++++++.++|+.+++.+.+. +|..|.++++.++.++....+++.++|+....+ . +.|.... ..|+.+.++
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~-----~~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-G-----RGWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-----chhhHHH-HHHHHHHHH
Confidence 999999999999999888888 889999999999999999998888887633221 1 2233333 566666666
Q ss_pred HHH
Q 044433 288 VML 290 (303)
Q Consensus 288 ~~~ 290 (303)
+|.
T Consensus 460 i~~ 462 (518)
T COG0728 460 IMA 462 (518)
T ss_pred HHH
Confidence 665
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.81 E-value=1.8e-17 Score=155.61 Aligned_cols=228 Identities=13% Similarity=0.104 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHH
Q 044433 59 WLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQ 137 (303)
Q Consensus 59 l~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~ 137 (303)
+|-+.|.++++++..+.+++|+.+++| +|++++|+++.+..+.++.......|++.+....++|..|++|++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 466899999999999999999999999 8999999999999988854333446899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 044433 138 RAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFL 216 (303)
Q Consensus 138 ~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 216 (303)
.+..+.++.+++..+ ++.+.+++...++.+++. ..++++..+..++..+.....+++|+.+|.+..+..+.+..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 999999999988874 466777777776666543 346788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccccc--ccCCCHHhhhChHHHHHHHHHHHHH
Q 044433 217 LHIVLTWIAVYV-----LKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKET--WTGLSVKAFTGICPYFKLTVASAVM 289 (303)
Q Consensus 217 ~~i~~~~~li~~-----~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (303)
+|++++..++.. .++|+.|+++++.+++++..+...++.+++++.+.. +.+..+..++.+|++++.+.|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776666542 246788999999999999888877766554332211 1111223356789999999999987
Q ss_pred H
Q 044433 290 L 290 (303)
Q Consensus 290 ~ 290 (303)
.
T Consensus 238 ~ 238 (488)
T TIGR02900 238 R 238 (488)
T ss_pred H
Confidence 6
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=99.81 E-value=1.9e-17 Score=152.60 Aligned_cols=197 Identities=8% Similarity=-0.062 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTG-HLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~-~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
+..|++++++.|..++++..++.+.+|+.+++ ++|++++|+|+.+.++.+.....+..+++++..|.++++ +|.++
T Consensus 212 ~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~ 288 (416)
T PRK15099 212 GLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRD 288 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH
Confidence 67899999999999999999999999999998 599999999999999977454778899999999999995 67788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 132 MGIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
.++..++.......++++.+++ ++++++++.++.+++ .+.+.+++++++++..+...+......+...++++.....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 366 (416)
T PRK15099 289 ITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILA 366 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888844 789999999987765 2346778888888888887777777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIV 256 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~ 256 (303)
.+...++++++++++++. +|..|+++++.+++++.+++......
T Consensus 367 ~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 367 EVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988889999999999999 99999999999999998877665544
No 22
>PRK10459 colanic acid exporter; Provisional
Probab=99.80 E-value=6.9e-17 Score=152.01 Aligned_cols=199 Identities=14% Similarity=0.037 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
+..|++++++.|.+.+++...+.+.+|+.++|+ +|++++|.|+.+.++.+.+...+...++....|..++. ++|.++
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~ 281 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK 281 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence 678999999999999999999999999999999 89999999999999988654556666778888999886 578889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 132 MGIICQRAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
.++.+++...+...+++|+.+ +..++++++.++.+++ ...+...++++++...+..+.......+++.||+|..++.
T Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 359 (492)
T PRK10459 282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKW 359 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHH
Confidence 999999999999999999884 5888899987776554 4567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL 257 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~ 257 (303)
+++..+++++..+.+... +|..|+++|+.+++.+......+++.|
T Consensus 360 ~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 360 NVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888887776 899999999999999988888887744
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.76 E-value=8.3e-16 Score=144.96 Aligned_cols=226 Identities=11% Similarity=0.039 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHH-HHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHHhcccchhHHHH
Q 044433 58 LWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALEL-AGASIASVGIQGLAYGIM-LGMASAVQTICGQAYGAKKYAAMGI 134 (303)
Q Consensus 58 il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~l-aa~~~a~~~~~~~~~~~~-~~l~~a~~~~is~~~g~~~~~~~~~ 134 (303)
+.|-+.-.+++++...+++++|..++++ +|++++ ++++.+.++.+....... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4566777889999999999999999999 999999 899999998874422222 357777666665554333 67777
Q ss_pred HHHHHHHHHHHHHH-HHH-HHHHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 135 ICQRAMVLHLGAAV-IPT-FLYWYSGPTLRAM--GQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 135 ~~~~~~~~~~~~~i-~~~-~~~~~~~~il~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
....+.......+. ... +.+.+++++..++ +.+++..+.+..|++++.++.++..+....++++|+.||.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77777776665544 344 4477788888887 4567777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHH--HHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHH
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIA--LTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAV 288 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaa--lat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 288 (303)
+++..+++++..+++.. ++|..|++ +++.+++.+..++..++++|++. + .+.++. ..++.++++++.+.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-L-LKPRFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-c-ccCcCC-CCChhHHHHHHHHHHHHH
Confidence 99988887775555544 49999999 99999999988887777665431 1 111111 134678999999999998
Q ss_pred HH
Q 044433 289 ML 290 (303)
Q Consensus 289 ~~ 290 (303)
..
T Consensus 235 ~~ 236 (502)
T TIGR01695 235 GS 236 (502)
T ss_pred HH
Confidence 76
No 24
>PRK15099 O-antigen translocase; Provisional
Probab=99.74 E-value=9.6e-16 Score=141.30 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHH
Q 044433 58 LWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIIC 136 (303)
Q Consensus 58 il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~ 136 (303)
+.|-+.-...+++...+.+++-..++.+ +|++++|.++....+..........|++++....++|+ ++|+|+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4455666777888888888888888899 99999999999888888554444777778878888888 68889999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 044433 137 QRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAF 215 (303)
Q Consensus 137 ~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 215 (303)
+.++.+.+..++..+ +++.+.+++...++++++. ..++.+..+..++..+....++.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877 5588889998877776642 24556666666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433 216 LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290 (303)
Q Consensus 216 ~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (303)
++|+.+ +++...+ .|+.|+++|+.+++.+..+..+++++|+++.+..+.+++ .+++.+|++++.|.|...+.
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~ 228 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITS 228 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHH
Confidence 999877 4444432 499999999999999988777777766543222211222 23566789999999988876
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.73 E-value=2.1e-15 Score=141.51 Aligned_cols=185 Identities=17% Similarity=0.174 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
+..|+++++++|...+.+...+.+.+|+.++++ +|++++|.|+.+.++.. ....+..+++....|.+++.+.++|.++
T Consensus 210 ~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 210 ALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 689999999999999999999999999999999 89999999998888888 5588888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 132 MGIICQRAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
.++..+++..+....++|..+ +..+++++...+.+++. ..+...+.++++..++..+.......+++.|+++..++.
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 366 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLI 366 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence 999999999999999999984 48888899987766553 237788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLS 243 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s 243 (303)
+.++.++|+++++++++. +|..|++.++ .+
T Consensus 367 ~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 367 SLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 999999999999999998 8999999999 44
No 26
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.54 E-value=3.9e-13 Score=120.52 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++++++|.+++++...+...+|+.+++++|++++++++.+.++.+ +...+..+++++..|.+++++|+||.++.
T Consensus 213 ~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (342)
T TIGR00797 213 EVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVES-LLFMPAFGFGIAVSILVGQALGAGDPKRA 291 (342)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 68899999999999999999999999999999999999999999999998 55888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGL 181 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~ 181 (303)
++..+++.++...++++.. +++++++++..++..|+++.+.+..++++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 292 KEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988 457889999999999999999999888764
No 27
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.37 E-value=1.2e-09 Score=101.74 Aligned_cols=199 Identities=16% Similarity=0.071 Sum_probs=158.5
Q ss_pred cCh-hHHHHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHH
Q 044433 86 LGA-LELAGASIASVGIQGLAYGIM-LGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLR 162 (303)
Q Consensus 86 ~g~-~~laa~~~a~~~~~~~~~~~~-~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~ 162 (303)
+|. .+..+|..+.++.+.+...+. .++.++..|...+.. ++++|+.++..+....+..+..+.++ +.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 456788889999885533343 458999999999999 89999999999999988888888877 44888999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC---chhHH
Q 044433 163 AM--GQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFG---LMGIA 237 (303)
Q Consensus 163 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G---~~Gaa 237 (303)
++ +.+++..+.+.+++++..+..++.++..+..+++|+++|...+....++..+..++...++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 88 4577888999999999999999999999999999999999999988887666655555555445 67 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433 238 LTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290 (303)
Q Consensus 238 lat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (303)
+++.++..+..++.+...+|.....+...++. .++.+++++...|..+..
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~ 211 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWR---DPNLKRFLKLAIPLLLSS 211 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCC---ChhHHHHHHHHHHHHHHH
Confidence 99999999999888888877533211111111 245788999999998876
No 28
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.20 E-value=4.8e-11 Score=110.79 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--hHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchh
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGA--LELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~--~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~ 130 (303)
+.+++++++++|..+...++.-...+-....|.+++ .++++.++...... ..+++..+++.+.++.++..+|+||.+
T Consensus 244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~-~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG-WHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 788999999999999999999999999999999875 68899999888888 558888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 044433 131 AMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLAS 209 (303)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 209 (303)
+++.....+...++.+++... .++...+.+...|..|+++.+...+..+.++...+..+.+.++.+..+|.|..+...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 999999999999999998877 5577777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcc
Q 044433 210 MAAGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPS 260 (303)
Q Consensus 210 ~~~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~ 260 (303)
+++.+. ++-++....+-+..++|..|.|.+...+..+....+.....+..|
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW 454 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDW 454 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccH
Confidence 999976 666888888887788999999999999966666666655554433
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.12 E-value=2e-07 Score=80.27 Aligned_cols=216 Identities=15% Similarity=0.111 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHH
Q 044433 59 WLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQ 137 (303)
Q Consensus 59 l~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~ 137 (303)
+|-+.-...+++...+.+++-..++.| +|+++.|.++....+.++.......|+.++..-.+++...+ .++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455566778888888899999999999 99999999999999988554444677777776666665543 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 044433 138 RAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLL 217 (303)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 217 (303)
.......+.++......... ..++.++. ...+........++.........++|+.++.+......+...++
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333332221 13333322 12222222222256778888899999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433 218 HIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290 (303)
Q Consensus 218 ~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (303)
..++..+++.. +.+..+..++..++..+..++..++.+|+.+ ..+. ...++..+++++.+.|..+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~ 218 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFS---FFSKKFFKEILRFGLPLFLSS 218 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccc---ccchHHHHHHHHHHHHHHHHH
Confidence 87777666654 2348999999999999888888887776532 1122 222567888899999888765
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.08 E-value=5.5e-07 Score=83.90 Aligned_cols=231 Identities=15% Similarity=0.078 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-hHHHHHHHHHHHHHHHHHHHHHh-hHhhHHHHHHHHhcccch
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGA-LELAGASIASVGIQGLAYGIMLG-MASAVQTICGQAYGAKKY 129 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~-~~laa~~~a~~~~~~~~~~~~~~-l~~a~~~~is~~~g~~~~ 129 (303)
+..|.....+.-.++ .-+..++-..+++. +|. ....|+.++.++-|.+--.+..| ++++..|...+...++..
T Consensus 8 sllks~~~vs~~Tl~----SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~ 83 (518)
T COG0728 8 SLLKSLIIVSSATLL----SRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGE 83 (518)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchh
Confidence 344555555554444 44455665555555 666 57789999999999644444443 689999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHcCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 044433 130 AAMGIICQRAMVLHLGAAVIPTFL-YWYSGPTL-RAMGQS--ESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVN 205 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 205 (303)
|+.++...........+.+...++ .++.+.+. ..++.. ++....+....+++.+..++.++.....++|++.++..
T Consensus 84 ~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~ 163 (518)
T COG0728 84 EAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFF 163 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeec
Confidence 888888888776777777666644 66777777 444442 33333688888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHH
Q 044433 206 PLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVA 285 (303)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 285 (303)
.+.+.-+.-.+.-+.....+.+..+....+.++++.++-+...++.+..++|.+...+....++ -++++++.+...|
T Consensus 164 ~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p 240 (518)
T COG0728 164 IPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLP 240 (518)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHH
Confidence 9988887665555544454444433247788999999999999999999988753332222222 1477888888888
Q ss_pred HHHHH
Q 044433 286 SAVML 290 (303)
Q Consensus 286 ~~~~~ 290 (303)
..+..
T Consensus 241 ~~l~~ 245 (518)
T COG0728 241 ALLGV 245 (518)
T ss_pred HHHHH
Confidence 88876
No 31
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.95 E-value=1.9e-08 Score=78.83 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=75.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433 178 ARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL 257 (303)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~ 257 (303)
+++++++.++..+....+..+++.||++..++.++.+.++|+++++++++. +|..|+++|+.+++.+......++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999988 999999999999999999999888887
Q ss_pred Ccc
Q 044433 258 SPS 260 (303)
Q Consensus 258 ~~~ 260 (303)
+-+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 633
No 32
>PRK10459 colanic acid exporter; Provisional
Probab=98.94 E-value=5e-07 Score=85.22 Aligned_cols=214 Identities=10% Similarity=0.069 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHH
Q 044433 56 RLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGI 134 (303)
Q Consensus 56 ~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~ 134 (303)
++..+=+....++++...+.+++-...++| +|+++.|.++.+..+.++.......|++.+. .|. +|. .++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~--~~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDI--SHL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccC--CHH
Confidence 455666667788889999999999999999 9999999999999998854344444555543 232 111 123
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 044433 135 ICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAG 213 (303)
Q Consensus 135 ~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 213 (303)
.......+....++...++ +.+.+++..+++ +++. ...+.+..+..++..+.....+.+|+..+.+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3445556666666665544 555555555554 4432 345677777777788888889999999999988888887
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433 214 AFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290 (303)
Q Consensus 214 ~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (303)
..++.......+.. .++|..+..+++.++..+..+......+++ + ++. ..++ ++.+|++++.+.|.....
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~-~~~-~~~~---~~~~k~ll~~~~~~~~~~ 220 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-Y-RPA-LHFS---LASVKPNLSFGAWQTAER 220 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-C-Ccc-ceec---HHHHHHHHhhhHHHHHHH
Confidence 77766666555543 468999999999999877665544332222 1 111 1122 355788899898887764
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.79 E-value=1.4e-05 Score=68.04 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=109.9
Q ss_pred HHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044433 75 LTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFL 153 (303)
Q Consensus 75 ~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 153 (303)
.+++-..+++| +|+++.|.++....+..+.......|+.+ .+.+ ..++|+++.++..+.......+.++...++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQ----SLVR-SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888 99999999999988888443322344433 3333 234556666666666665555544444332
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 044433 154 YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL 233 (303)
Q Consensus 154 ~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~ 233 (303)
...+...++ +++ ...++....+..++........+.+++.+|.+..........++...+...+... +.+.
T Consensus 78 ---~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFFG-DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHhC-Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 111222333 332 2334556667778888999999999999999999999999888775444444432 2488
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 044433 234 MGIALTLSLSWWFLVIINALYI 255 (303)
Q Consensus 234 ~Gaalat~~s~~~~~~~~~~~l 255 (303)
.+..++..++..+..+......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLL 170 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899998888877766655533
No 34
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.66 E-value=6.2e-06 Score=77.49 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
...+++.|-+.-...+++...+..++-...++| +|+++.|.++.+..+.+++......|+..+..-.+++...+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 345778888888889999999999999999999 9999999999999999966555557888888888888877666666
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433 132 MGII-CQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM 210 (303)
Q Consensus 132 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 210 (303)
.... ......+....+++.........+. ++ .....+.......+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 6665 5555555555555544333322222 22 23345667788888889999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh-CccccccccCCCHHhhhChHHHHHHHHHHHHH
Q 044433 211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL-SPSCKETWTGLSVKAFTGICPYFKLTVASAVM 289 (303)
Q Consensus 211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (303)
.+.. ..-+...+.+.. ....+..++...+..........+.++ +++..+. .+ +..++.+++.++.++|....
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP--IL-RFSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cc-CchhHHHHHHHHHhhHHHHH
Confidence 4444 111111122211 345566666666666655555555542 2111111 11 11356788899999999888
Q ss_pred H
Q 044433 290 L 290 (303)
Q Consensus 290 ~ 290 (303)
.
T Consensus 226 ~ 226 (480)
T COG2244 226 S 226 (480)
T ss_pred H
Confidence 6
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.65 E-value=8.7e-05 Score=64.13 Aligned_cols=236 Identities=14% Similarity=-0.004 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh---HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccch
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGAL---ELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKY 129 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~---~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~ 129 (303)
.+.++++++-+|+.++.+...+...+-+.-+++..++ .+|+|+++..+.- +...+...+-+. +-.++.+++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l-f~~sp~~~~~~i-----gl~~V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML-FFASPLSMFHHI-----GLVFVNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHhChhhhhHHH-----HHHHhcchh
Confidence 4678999999999999999999999999999874433 4899999988876 334444444444 445554433
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHH-HHhhH-HHH-HHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 044433 130 AAMGIICQRAMVLHLGAA-VIPTFL-YWYSG-PTL-RAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVN 205 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-i~~~~~-~~~~~-~il-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 205 (303)
+ ++....+...+.++. +...++ +.-.+ .++ .+++.+|++.+.+...+.++.+-.++.++....++++.-..++.
T Consensus 82 s--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 82 S--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 3 333333332222222 222222 22223 333 77799999999999999999999999999999999888667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHH---HHHHHHHHHH-HHHHHHHHhCccccccccCCCHHhhhChHHHH
Q 044433 206 PLASMAAGAFLLHIVLTWIAVYVLKFGL-MGIAL---TLSLSWWFLV-IINALYIVLSPSCKETWTGLSVKAFTGICPYF 280 (303)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~li~~~~~G~-~Gaal---at~~s~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (303)
.....++...+.-++...+++.. +... .+.++ +...+..+.+ .+.+-++..-....+...+...+.-..+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 66666666554445444444422 1111 12211 1111122211 11122222211112222233334456788999
Q ss_pred HHHHHHHHHH---HHHHHHh
Q 044433 281 KLTVASAVML---WFVQILP 297 (303)
Q Consensus 281 ~~~~p~~~~~---~~~~~~~ 297 (303)
+...|.+..+ |....++
T Consensus 239 ~F~~PL~~~~~tq~~SrplV 258 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLV 258 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 6655544
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.57 E-value=2e-05 Score=74.70 Aligned_cols=203 Identities=14% Similarity=0.055 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccch--
Q 044433 55 SRLLWLLSGASIVVSIFNYMLTFVTLMFTGH---LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKY-- 129 (303)
Q Consensus 55 ~~~il~~~~P~~~~~~~~~l~~~id~~~v~~---~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~-- 129 (303)
-++++++....+.+.+.-.+.+--|...+.. .+.++.|.|++++++.++.+=.+...+=.+.-...++....++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3789999999999999999999999999988 45679999999999999776777778888888888887754322
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Q 044433 130 -------AAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQ 201 (303)
Q Consensus 130 -------~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 201 (303)
++..+.+...+++...+++.+. ++...++.++.+++++.-....+...++.++...|+.+++.++-++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4567778888888888887776 44777888888886655444556788999999999999999999999998
Q ss_pred CCchHHHHHHHH---HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 202 NIVNPLASMAAG---AFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 202 g~~~~~~~~~~~---~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
.+.+-.-..+-. ..++.+..+++|+.. ++|..|..+|..+......+....++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776554444333 346667788888886 79999999999999999888888888764
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.00058 Score=61.79 Aligned_cols=201 Identities=15% Similarity=0.074 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH-
Q 044433 56 RLLWLLSGASIVVSIFNYMLTFVTLMFTGH---LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA- 131 (303)
Q Consensus 56 ~~il~~~~P~~~~~~~~~l~~~id~~~v~~---~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~- 131 (303)
++..+...-..-+...-.+.+-=|..++.. .+-.+.|.|..+++..++.+=.+...+--..-...+|....++.|+
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 556666667777888888888888888874 4445778888888877766666666676666677777666555554
Q ss_pred --HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 044433 132 --MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLA 208 (303)
Q Consensus 132 --~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 208 (303)
+..+....+.....+++.+. ++...++.++.+.+++.-....+...+++++...|+.+++.+.-++.++.++.+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 44556666666666675555 446677788888877655455566789999999999999999999999887765544
Q ss_pred H---HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 209 S---MAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 209 ~---~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
. ......+..++.+|+|+.. +|..|-.+|..+...+......+++++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333446678899999999 8889999999999888777777766653
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.68 E-value=0.00041 Score=59.55 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHh
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAY 124 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~ 124 (303)
+..|++++.+.|..++++...+...+|+.++++ .|++++|.|+.+.++.. ....+...+.+...|.+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~-~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 202 KFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLAS-AISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 788999999999999999999999999999999 89999999999999999 447788889999999998863
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.70 E-value=0.017 Score=48.96 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 044433 57 LLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQA 123 (303)
Q Consensus 57 ~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~ 123 (303)
+.++.+.|..++++...+.+.+|..+++. +|++++|.|+.+.++.+.+...+..++++...|.++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37999999999999999999999999999 99999999999999999553378889999999988863
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=87.60 E-value=22 Score=32.34 Aligned_cols=139 Identities=11% Similarity=0.105 Sum_probs=94.7
Q ss_pred HHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHh
Q 044433 104 LAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLI 182 (303)
Q Consensus 104 ~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~ 182 (303)
+...+..|++...+-.+|...=+||++++...+.-...+....+..+. +++ ....+. ...|=...+
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~-----si~yk~l~~ 138 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQY-----SIVYKILAC 138 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCch-----hHHHHHHHH
Confidence 445566677777778888888788888877766555544444433322 111 111111 111222333
Q ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 183 PQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
.....++.......++.+.+|.+.....-.++.++.+.+..++-. .++.|.-++-.++..........++.|.
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 445566777788889999999999999999999888888877754 4899999999999998888877777764
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=82.06 E-value=40 Score=30.71 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 044433 130 AAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLA 208 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 208 (303)
++.....++.+.=.+-+-..+. .++..++.++.+++-++ .-.+.+.+-..+.-.....+.+-.+.-=-++-+..+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444445555544444544444 45777888888887654 222333444444433333333333333345666677
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHH
Q 044433 209 SMAAGAFLLHIVLTWIAVYV-LKFGLMGIALTLSLSWWF 246 (303)
Q Consensus 209 ~~~~~~~~~~i~~~~~li~~-~~~G~~Gaalat~~s~~~ 246 (303)
..+..-.+.|.++.+++... .++--.|..+|..+.-.+
T Consensus 396 ~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv 434 (467)
T COG4267 396 ELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV 434 (467)
T ss_pred hhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence 77777778899998888653 234444554554444333
No 42
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=49.58 E-value=1.6e+02 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTF 77 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~ 77 (303)
+..|.++++.+|+......+...+.
T Consensus 240 ~~~k~Ll~ymiPL~lVY~aEY~Inq 264 (402)
T PF02487_consen 240 KRLKPLLWYMIPLFLVYFAEYFINQ 264 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888899999999998887643
No 43
>PRK03612 spermidine synthase; Provisional
Probab=48.57 E-value=2.5e+02 Score=26.88 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 044433 206 PLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYI 255 (303)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l 255 (303)
....-++.+.+-.+...+++++. +|..+..+....-++...+...+..
T Consensus 150 ly~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 150 VLAADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred hHhHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555667778888887 8888877766655555554444333
No 44
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=46.34 E-value=96 Score=21.39 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 044433 116 VQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPT 151 (303)
Q Consensus 116 ~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (303)
.+..+-..+.+||++++++..+++..++.+..+...
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred echhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345667788899999999999888888766554433
No 45
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=45.22 E-value=72 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 232 GLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 232 G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
+..|...++.+++.+.+++.-.+.++.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 344777778888888777776666654
No 46
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=36.89 E-value=39 Score=34.60 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=17.4
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 044433 117 QTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPT 151 (303)
Q Consensus 117 ~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (303)
...++-..|.+|..-..-.-...+-+.+.+++|..
T Consensus 986 sSvivArkG~gdMAVan~iGSNIFnIllgLGlPWl 1020 (1096)
T TIGR00927 986 TSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWL 1020 (1096)
T ss_pred HHHHHHHccCCcceeeeccccchheeeeeccHHHH
Confidence 33334444655555444455555555555555544
No 47
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=31.96 E-value=1.1e+02 Score=27.50 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=19.6
Q ss_pred ccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433 265 WTGLSVKAFTGICPYFKLTVASAVML 290 (303)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (303)
.+.+++..+...++.+|.++|+.+-.
T Consensus 78 ~~~l~~~i~~~~~~~lk~~vPa~iYa 103 (345)
T KOG2234|consen 78 LKSLSKEILAAPRETLKVSVPALIYA 103 (345)
T ss_pred hhhcCHHHHhChHHHHHHHHHHHHHH
Confidence 34455556778889999999998764
No 48
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=28.78 E-value=1.8e+02 Score=26.01 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LG 87 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g 87 (303)
...++++++.+|+......+.+.-.+-+.+++| +|
T Consensus 232 ~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~ 267 (345)
T PF07260_consen 232 ATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLS 267 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 578999999999999999999999999999999 54
No 49
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=28.31 E-value=4.4e+02 Score=24.19 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH-HHH
Q 044433 221 LTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML-WFV 293 (303)
Q Consensus 221 ~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 293 (303)
...+++.. +|-.|.|+||.+-.++..++.=..=+.-.-.++ .++..+....+..++++.-|....+ |..
T Consensus 77 aT~~~irl--~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~p--erva~~~s~~l~~l~~l~~Plv~lln~it 146 (423)
T COG4536 77 ATILGIRL--YGDAGVAIATGVLTFVILVFAEVLPKTIAALYP--ERVALPSSFILAILVRLFGPLVWLLNAIT 146 (423)
T ss_pred HHHHHHHH--hccchHHHHHHHHHHHHHHHHHhcchHHhhhCh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556 899999999887655444333221111000111 1222333455666777777776666 543
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.44 E-value=82 Score=23.71 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 044433 235 GIALTLSLSWWFLVIINALYIVL 257 (303)
Q Consensus 235 Gaalat~~s~~~~~~~~~~~l~~ 257 (303)
|+.++.+.+-+...+++.++++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333333444444
No 51
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=27.30 E-value=3.6e+02 Score=23.58 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhCcc
Q 044433 247 LVIINALYIVLSPS 260 (303)
Q Consensus 247 ~~~~~~~~l~~~~~ 260 (303)
.+++.+++++|++|
T Consensus 304 i~~~~~~~fkrk~W 317 (318)
T TIGR00383 304 IALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHcCC
Confidence 34445556665543
No 52
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=24.61 E-value=4.2e+02 Score=22.14 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
++.+.+-+...|+..+.....+...+....+++ +|-++--..+++-+= ..++..--+++..|...
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS-----------VTtpiAi~is~~iGG~~--- 133 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS-----------VTTPIAIEISEQIGGIP--- 133 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-----------hhHHHHHHHHHHhCChH---
Confidence 667888889999999999999999999999988 665544444433222 22222234566666431
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHH
Q 044433 132 MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSES 169 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~ 169 (303)
.++..+.+... +...++++++++++-+++
T Consensus 134 ---------sLta~~VvitGi~Ga~~g~~llk~~~I~~~ 163 (215)
T PF04172_consen 134 ---------SLTAVFVVITGILGAVLGPPLLKLLRIKDP 163 (215)
T ss_pred ---------HHHHHHHHHHhhHHHHhHHHHHhHcccccH
Confidence 12233333333 336678889999975544
No 53
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.61 E-value=4.3e+02 Score=22.26 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCC
Q 044433 127 KKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQS 167 (303)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~ 167 (303)
++++...+....++...+++-+++++++.++.++..+++.+
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 34455555555555555555555556677777777777643
No 54
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.34 E-value=3.2e+02 Score=24.34 Aligned_cols=14 Identities=14% Similarity=-0.017 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhCcc
Q 044433 247 LVIINALYIVLSPS 260 (303)
Q Consensus 247 ~~~~~~~~l~~~~~ 260 (303)
.+++.+++++|++|
T Consensus 302 ~~~~~~~~f~rk~W 315 (316)
T PRK11085 302 AGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHccc
Confidence 33444556655543
No 55
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=23.85 E-value=4.4e+02 Score=22.20 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA 131 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 131 (303)
++.+.+-+...|+..+.....+...+....+++ +|-++--..+++-+= ..++..--+++..|.. .
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkS-----------vTtpiAm~vs~~iGG~-~-- 143 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKS-----------VTTPIAMHVSEMIGGI-P-- 143 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHH-----------hhHHHHHHHHHHhCCh-H--
Confidence 567788888899999999999999999999988 665443333433222 2222223446666532 1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHH
Q 044433 132 MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSES 169 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~ 169 (303)
.++..+.+... +...+++++++++.-++.
T Consensus 144 ---------sLta~~vvitGi~Ga~~g~~ll~~~~i~~~ 173 (226)
T TIGR00659 144 ---------AVTAVFVILTGLLGTVFGPMVLRYFRVKNE 173 (226)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 12233333333 336778889999975543
No 56
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=23.01 E-value=8.2e+02 Score=25.00 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHh------hHHH------HHHHH
Q 044433 56 RLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMAS------AVQT------ICGQA 123 (303)
Q Consensus 56 ~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~------a~~~------~is~~ 123 (303)
..++-.=+| .+++++..++.+=-+.+||.-|..+ ++.+....+. ..+..+++. +..| ++|++
T Consensus 115 Gt~mGVyLP-clQnIlGVilFiRLtWvVG~AGv~q--~fllv~iCC~---cTmLTaISmSAIATNGVVpaGGsYfmISRs 188 (1075)
T KOG2082|consen 115 GTLMGVYLP-CLQNILGVILFIRLTWVVGMAGVGQ--GFLLVFICCL---CTMLTAISMSAIATNGVVPAGGSYFMISRS 188 (1075)
T ss_pred ceeeeeeHH-HHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHH---HHHHHHHHHHHHHhcCcccCCCeeEEEecc
Confidence 344444445 5688888888888888887644211 1222111111 111222222 2222 56677
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHcCCCH
Q 044433 124 YGAKKYAAMGIICQRAMVLHLGAAVIPT--FLYWYSGPTLRAMGQSE 168 (303)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~il~~~~~~~ 168 (303)
+|.+=--.+.-.+..+-.++..+.++-+ +++.+.-|-..+|+.+.
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~ 235 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAED 235 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccc
Confidence 7765444555555555555555555543 44444556666776443
No 57
>PRK10739 putative antibiotic transporter; Provisional
Probab=21.81 E-value=4.5e+02 Score=21.54 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=39.1
Q ss_pred HHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHH
Q 044433 106 YGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQI 176 (303)
Q Consensus 106 ~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~ 176 (303)
+.+...++.. |..-..-...+.++-++..++....++.+. .++.+.++.++.+|+-+-+....+..
T Consensus 12 f~iinPig~i--piflslt~~~~~~~r~~ia~~a~~~a~~il---l~f~~~G~~iL~~fGIsl~afrIAGG 77 (197)
T PRK10739 12 ILIMDPLGNL--PIFMSVLKHLEPKRRRAIMIRELLIALLVM---LVFLFAGEKILAFLNLRTETVSISGG 77 (197)
T ss_pred HHHHhHhhHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3344444444 555555555566666666665555544333 34566688899999977655555444
No 58
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.30 E-value=34 Score=29.67 Aligned_cols=25 Identities=28% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHHH
Q 044433 197 FRQAQNIVNPLASMAAGAFLLHIVL 221 (303)
Q Consensus 197 ~l~~~g~~~~~~~~~~~~~~~~i~~ 221 (303)
.+|-.|.+.+.....+++..+-+++
T Consensus 128 lLr~~GAs~WtiLaFcLAF~Laivl 152 (381)
T PF05297_consen 128 LLRELGASFWTILAFCLAFLLAIVL 152 (381)
T ss_dssp -------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444443333
Done!