Query 044433
Match_columns 303
No_of_seqs 184 out of 1493
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 6.8E-27 2.3E-31 216.0 19.9 237 53-290 9-251 (460)
2 3mkt_A Multi antimicrobial ext 99.9 4.5E-24 1.5E-28 197.1 19.6 205 53-258 235-446 (460)
3 2k1k_A Ephrin type-A receptor 21.7 1E+02 0.0034 17.1 3.0 7 235-241 15-21 (38)
4 2jwa_A Receptor tyrosine-prote 14.8 1.9E+02 0.0066 16.6 3.3 9 250-258 30-38 (44)
5 4aps_A DI-OR tripeptide H+ sym 14.7 5.7E+02 0.02 22.0 10.8 35 203-237 420-454 (491)
6 2ks1_B Epidermal growth factor 12.5 2.3E+02 0.0079 16.2 4.4 7 252-258 32-38 (44)
7 1pw4_A Glycerol-3-phosphate tr 7.3 9.9E+02 0.034 19.9 21.7 22 231-252 410-431 (451)
8 2jrx_A UPF0352 protein YEJL; h 7.0 5.6E+02 0.019 16.8 4.3 30 112-141 37-66 (83)
9 2juw_A UPF0352 protein SO_2176 6.4 6E+02 0.02 16.5 3.7 16 87-102 28-43 (80)
10 2jek_A RV1873; structural geno 6.3 8.1E+02 0.028 18.0 5.1 91 120-211 53-143 (145)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.95 E-value=6.8e-27 Score=216.01 Aligned_cols=237 Identities=20% Similarity=0.317 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
++.|++++.++|.+++++...+.+.+|+.+++++|++++|+++.+.++.+ ....+..+++.+..+.++|++|++|+++.
T Consensus 9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 68899999999999999999999999999999999999999999999977 44778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAA 212 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 212 (303)
++.++.++.+..+++++..+++.+.++++.+++.+++..+.+..|+++++++.++..+....++++|+.||++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF 167 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999999876678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-c---CCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc--cccCCCHHhhhChHHHHHHHHHH
Q 044433 213 GAFLLHIVLTWIAVYV-L---KFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTVAS 286 (303)
Q Consensus 213 ~~~~~~i~~~~~li~~-~---~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ 286 (303)
++.++|+++++++++. + ++|+.|+++|+.+++++..++..++++++++.++ .++++.+.+++.++++++.++|.
T Consensus 168 ~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 247 (460)
T 3mkt_A 168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247 (460)
T ss_dssp HHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHH
Confidence 9999999999999975 4 6999999999999999999988888877654332 12333344578899999999999
Q ss_pred HHHH
Q 044433 287 AVML 290 (303)
Q Consensus 287 ~~~~ 290 (303)
.++.
T Consensus 248 ~~~~ 251 (460)
T 3mkt_A 248 AAAL 251 (460)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=4.5e-24 Score=197.08 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433 53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132 (303)
Q Consensus 53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~ 132 (303)
+..|+++++++|..++++...+...+|+.+++++|++++|+|+++.++.++ ...+..+++++..|.+++++|+||+|++
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~~ 313 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKGA 313 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 467999999999999999999999999999999999999999999999994 4789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433 133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA 211 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 211 (303)
++..+++..+...++++++ +++.+++++..++.+|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 393 (460)
T 3mkt_A 314 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT 393 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999999999999998 558889999999988888889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHh----cC-CCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433 212 AGAF-LLHIVLTWIAVYV----LK-FGLMGIALTLSLSWWFLVIINALYIVLS 258 (303)
Q Consensus 212 ~~~~-~~~i~~~~~li~~----~~-~G~~Gaalat~~s~~~~~~~~~~~l~~~ 258 (303)
+++. ++|+++++++.+. .+ +|+.|+|+|+.+++.+..++..+.++|.
T Consensus 394 ~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 394 FISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 9999999999987 67 9999999999999999888776655543
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.72 E-value=1e+02 Score=17.07 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 044433 235 GIALTLS 241 (303)
Q Consensus 235 Gaalat~ 241 (303)
|+.++..
T Consensus 15 GiVvG~v 21 (38)
T 2k1k_A 15 AVIFGLL 21 (38)
T ss_dssp HHHHHHH
T ss_pred eeehHHH
Confidence 3333333
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.82 E-value=1.9e+02 Score=16.56 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=3.9
Q ss_pred HHHHHHHhC
Q 044433 250 INALYIVLS 258 (303)
Q Consensus 250 ~~~~~l~~~ 258 (303)
....+++|+
T Consensus 30 ~~~~~~RRR 38 (44)
T 2jwa_A 30 VFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHhheehh
Confidence 334444443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=14.70 E-value=5.7e+02 Score=21.99 Aligned_cols=35 Identities=0% Similarity=-0.224 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 044433 203 IVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIA 237 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa 237 (303)
+.......+....+...+...+.-...+.+.....
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 454 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYF 454 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33334444444444444444443333334444333
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.45 E-value=2.3e+02 Score=16.19 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHhC
Q 044433 252 ALYIVLS 258 (303)
Q Consensus 252 ~~~l~~~ 258 (303)
+++++|+
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3344433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.30 E-value=9.9e+02 Score=19.92 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=10.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044433 231 FGLMGIALTLSLSWWFLVIINA 252 (303)
Q Consensus 231 ~G~~Gaalat~~s~~~~~~~~~ 252 (303)
.|.....+...+...+..++..
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 4655555544444444443333
No 8
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=6.99 E-value=5.6e+02 Score=16.77 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=16.7
Q ss_pred hHhhHHHHHHHHhcccchhHHHHHHHHHHH
Q 044433 112 MASAVQTICGQAYGAKKYAAMGIICQRAMV 141 (303)
Q Consensus 112 l~~a~~~~is~~~g~~~~~~~~~~~~~~~~ 141 (303)
+|...+.++.+..+..+++.+.+.+.+++.
T Consensus 37 LGNmvTNlln~~V~~~qR~~iAe~Fa~AL~ 66 (83)
T 2jrx_A 37 LGNMVTNLINTSIAPAQRQAIANSFARALQ 66 (83)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 444444555555556666666666655544
No 9
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=6.42 E-value=6e+02 Score=16.53 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHHHH
Q 044433 87 GALELAGASIASVGIQ 102 (303)
Q Consensus 87 g~~~laa~~~a~~~~~ 102 (303)
.+.+++-..+++...+
T Consensus 28 Ap~DLSLMvLGN~vTn 43 (80)
T 2juw_A 28 APTDLSLMALGNCVTH 43 (80)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 3445555555544444
No 10
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=6.30 E-value=8.1e+02 Score=17.97 Aligned_cols=91 Identities=7% Similarity=-0.090 Sum_probs=0.0
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044433 120 CGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQ 199 (303)
Q Consensus 120 is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 199 (303)
.++.||=.+.++++.++..-+.=.=+.-+.-+++-.-......+||. ++..+.-.....+-...---..+..++..++.
T Consensus 53 ~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~~~ll~~~~~sa~~IfG~-~D~~KlrSsMTLFa~a~~~~~~F~~vL~~~f~ 131 (145)
T 2jek_A 53 LAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGP-PDDLKLCSSMTLFARATDANQDFVALLAKYYG 131 (145)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCT-THHHHHHHHHHHHHHHCSCCHHHHHHHHHHST
T ss_pred hhhHhccCCHHHHHHHHcChHHHHHHHHHHHHHHhccCCCHHHHcCC-hhHHHHHhHHHHHHHcCCCchHHHHHHHHHcC
Q ss_pred HcCCchHHHHHH
Q 044433 200 AQNIVNPLASMA 211 (303)
Q Consensus 200 ~~g~~~~~~~~~ 211 (303)
|..|.++.-.+.
T Consensus 132 G~~D~~Tl~~L~ 143 (145)
T 2jek_A 132 GGEDRRTVALLA 143 (145)
T ss_dssp TCCCHHHHHHHH
T ss_pred CCCCHHHHHHhc
Done!