Query 044433
Match_columns 303
No_of_seqs 184 out of 1493
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 05:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044433.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044433hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 64.7 32 0.0023 27.5 20.4 27 231-257 407-433 (447)
2 d2qtia1 a.284.1.1 (A:8-72) Unc 5.9 2.8E+02 0.02 15.9 3.9 25 116-140 34-58 (65)
3 d2jrxa1 a.284.1.1 (A:1-75) Unc 5.1 3.3E+02 0.024 16.0 4.5 30 112-141 37-66 (75)
4 d2juza1 a.284.1.1 (A:1-72) Unc 4.4 3.7E+02 0.027 15.6 3.8 30 112-141 37-66 (72)
5 d2jpqa1 a.284.1.1 (A:1-75) Hyp 4.3 3.9E+02 0.028 15.7 3.2 17 86-102 27-43 (75)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.2 2.3E+02 0.017 15.5 1.8 28 121-148 3-30 (53)
7 d2jeka1 a.255.1.1 (A:6-145) Hy 3.9 5.7E+02 0.041 16.9 5.1 90 120-210 48-137 (140)
8 d1ppje2 f.23.12.1 (E:1-69) Iro 3.5 4.5E+02 0.033 15.1 7.4 23 7-29 2-24 (69)
9 d3dhwa1 f.58.1.1 (A:6-208) D-m 3.1 7E+02 0.051 16.6 5.1 31 55-85 130-160 (203)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 2.8 3.6E+02 0.026 12.5 3.1 13 237-249 16-28 (34)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=64.69 E-value=32 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.168 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433 231 FGLMGIALTLSLSWWFLVIINALYIVL 257 (303)
Q Consensus 231 ~G~~Gaalat~~s~~~~~~~~~~~l~~ 257 (303)
.|..+..+.......+..++......+
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666555555555554444444443
No 2
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=5.87 E-value=2.8e+02 Score=15.88 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=10.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHH
Q 044433 116 VQTICGQAYGAKKYAAMGIICQRAM 140 (303)
Q Consensus 116 ~~~~is~~~g~~~~~~~~~~~~~~~ 140 (303)
.+-++.+...+.+++.+.+.+.+++
T Consensus 34 vTniln~~V~~~qR~~iAe~Fa~AL 58 (65)
T d2qtia1 34 VTHLLERKVPSESRQAVAEQFAKAL 58 (65)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 3
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=5.13 E-value=3.3e+02 Score=15.98 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=16.9
Q ss_pred hHhhHHHHHHHHhcccchhHHHHHHHHHHH
Q 044433 112 MASAVQTICGQAYGAKKYAAMGIICQRAMV 141 (303)
Q Consensus 112 l~~a~~~~is~~~g~~~~~~~~~~~~~~~~ 141 (303)
+|...+-++.+..++.+++.+.+.+.+++.
T Consensus 37 LGN~vTniln~~V~~~qR~~iAe~Fa~AL~ 66 (75)
T d2jrxa1 37 LGNMVTNLINTSIAPAQRQAIANSFARALQ 66 (75)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 444444555555666666666666655543
No 4
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=4.40 E-value=3.7e+02 Score=15.61 Aligned_cols=30 Identities=3% Similarity=0.152 Sum_probs=16.3
Q ss_pred hHhhHHHHHHHHhcccchhHHHHHHHHHHH
Q 044433 112 MASAVQTICGQAYGAKKYAAMGIICQRAMV 141 (303)
Q Consensus 112 l~~a~~~~is~~~g~~~~~~~~~~~~~~~~ 141 (303)
+|...+-++.+..++.+++.+.+.+.+++.
T Consensus 37 LGN~vTniln~~V~~~qR~~iAe~Fa~AL~ 66 (72)
T d2juza1 37 LGNMASNLLTTSVPQTQCEALAQAFSNSLI 66 (72)
T ss_dssp HHHHHHHHHTTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 444444455555555666666665555544
No 5
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=4.33 E-value=3.9e+02 Score=15.67 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=8.6
Q ss_pred cChhHHHHHHHHHHHHH
Q 044433 86 LGALELAGASIASVGIQ 102 (303)
Q Consensus 86 ~g~~~laa~~~a~~~~~ 102 (303)
-.+.+++-..+++...+
T Consensus 27 ~Ap~DLSLMvLGN~vTn 43 (75)
T d2jpqa1 27 AASPELTLMIAGNIATN 43 (75)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHH
Confidence 34455555555544444
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.17 E-value=2.3e+02 Score=15.48 Aligned_cols=28 Identities=14% Similarity=-0.019 Sum_probs=16.7
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHH
Q 044433 121 GQAYGAKKYAAMGIICQRAMVLHLGAAV 148 (303)
Q Consensus 121 s~~~g~~~~~~~~~~~~~~~~~~~~~~i 148 (303)
++..|++-.+.++..+.....++...++
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 5566766666666666665555554443
No 7
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.86 E-value=5.7e+02 Score=16.92 Aligned_cols=90 Identities=6% Similarity=-0.072 Sum_probs=51.2
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044433 120 CGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQ 199 (303)
Q Consensus 120 is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 199 (303)
.++.||=++.++++.++..-..=.=+.-+.-+++-.-......+||..++ .+.-.....+-...---..+..++..++.
T Consensus 48 ~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~ll~~~~~s~~~IfG~~D~-lKlrSsmTLF~~a~~~~~~F~~~L~~~f~ 126 (140)
T d2jeka1 48 LAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDD-LKLCSSMTLFARATDANQDFVALLAKYYG 126 (140)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHH-HHHHHHHHHHHHHCSCCHHHHHHHHHHST
T ss_pred HHHHhccCCHHHHHHHHhChHhHHHHHHHHHHHHHccCCCHHHHCCChhH-HHHHhHHHHHHHhCCCchHHHHHHHHHhC
Confidence 58999999999999887765443333333323333444566677776443 33333322222111111246777778888
Q ss_pred HcCCchHHHHH
Q 044433 200 AQNIVNPLASM 210 (303)
Q Consensus 200 ~~g~~~~~~~~ 210 (303)
|..|.++.-.+
T Consensus 127 G~~d~~Tl~~L 137 (140)
T d2jeka1 127 GGEDRRTVALL 137 (140)
T ss_dssp TCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88887765443
No 8
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.45 E-value=4.5e+02 Score=15.06 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=13.1
Q ss_pred hhhcccCCCCCcCcccccccCCC
Q 044433 7 ETRLLAEPLDDYSHASSRICGLS 29 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (303)
+++..-|.++++++........+
T Consensus 2 HTDi~vPDFs~YRr~~~~d~~~~ 24 (69)
T d1ppje2 2 HTDIKVPDFSDYRRPEVLDSTKS 24 (69)
T ss_dssp GGGCCCCCCTTTBCGGGCCTTSC
T ss_pred CCCcCCCCchhhccccccCcccc
Confidence 45566677777766544444333
No 9
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=7e+02 Score=16.64 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044433 55 SRLLWLLSGASIVVSIFNYMLTFVTLMFTGH 85 (303)
Q Consensus 55 ~~~il~~~~P~~~~~~~~~l~~~id~~~v~~ 85 (303)
.|-++..+.|..+..........+....+..
T Consensus 130 ~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~ 160 (203)
T d3dhwa1 130 RKVLLPEALPGLVNAATITLITLVGYSAMGG 160 (203)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666655555555444
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=2.76 E-value=3.6e+02 Score=12.51 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 044433 237 ALTLSLSWWFLVI 249 (303)
Q Consensus 237 alat~~s~~~~~~ 249 (303)
|++..++..+.++
T Consensus 16 wlafslamlfvfi 28 (34)
T d1xmeb2 16 WLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
Done!