BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044435
         (378 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
           MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
           Cerevisiae Complexed With Nad, Udp-Glucose, And
           Galactose
          Length = 699

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVR--IHVFKSPVYH 172
           +P G+I  +PL   + +LP   +   G +  L+ FG D  S D   +R  IHV      H
Sbjct: 199 HPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGH 258

Query: 173 IEATVY 178
           I A  Y
Sbjct: 259 IAALQY 264


>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
           Alpha Spectrin
          Length = 216

 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 99  FDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLP 133
           FD  +     LLA ++Y K +  +N L KKH++L 
Sbjct: 15  FDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLE 49


>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
           Brain Alpha Spectrin
 pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
           Brain Alpha Spectrin
          Length = 322

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 99  FDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLP 133
           FD  +     LLA ++Y K +  +N L KKH++L 
Sbjct: 15  FDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLE 49


>pdb|2I1S|A Chain A, Crystal Structure Of Protein Of Unknown Function Mm3350
           From Methanosarcina Mazei Go1
 pdb|2I1S|B Chain B, Crystal Structure Of Protein Of Unknown Function Mm3350
           From Methanosarcina Mazei Go1
          Length = 188

 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 170 VYHIEATVYGLKVNLWRRIKNIKNFPY 196
           VYH++ ++ G+   +WRRI+  +N+ +
Sbjct: 8   VYHLKLSIKGITPQIWRRIQVPENYTF 34


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,502,185
Number of Sequences: 62578
Number of extensions: 419148
Number of successful extensions: 1082
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 5
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)