Query 044435
Match_columns 378
No_of_seqs 147 out of 1554
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 3.1E-33 6.6E-38 245.2 27.3 219 103-333 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.6 7.1E-14 1.5E-18 115.5 17.6 141 207-352 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.5 2.7E-13 5.8E-18 107.4 13.9 107 207-318 1-118 (129)
4 PHA02713 hypothetical protein; 99.5 2.9E-12 6.2E-17 126.0 22.6 199 117-342 320-544 (557)
5 PLN03215 ascorbic acid mannose 99.5 1.7E-11 3.6E-16 111.8 23.0 297 1-339 1-354 (373)
6 KOG4441 Proteins containing BT 99.5 4.4E-12 9.6E-17 124.3 18.7 212 102-339 327-554 (571)
7 KOG4441 Proteins containing BT 99.4 4.6E-12 1E-16 124.2 16.8 198 117-339 301-507 (571)
8 PHA02713 hypothetical protein; 99.4 4.1E-11 8.9E-16 117.9 19.9 195 118-339 273-497 (557)
9 PHA03098 kelch-like protein; P 99.4 8.5E-11 1.8E-15 116.1 21.1 195 118-339 312-519 (534)
10 PHA02790 Kelch-like protein; P 99.3 2.2E-10 4.9E-15 111.0 18.9 183 118-338 288-477 (480)
11 PLN02153 epithiospecifier prot 99.3 1.9E-09 4.1E-14 100.2 23.8 211 117-340 50-293 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.2 1.9E-09 4.2E-14 100.5 20.7 216 107-339 17-306 (346)
13 PLN02193 nitrile-specifier pro 99.2 4.4E-09 9.6E-14 101.7 22.5 208 118-339 194-418 (470)
14 TIGR03548 mutarot_permut cycli 99.2 9.3E-09 2E-13 94.9 21.7 197 119-339 41-287 (323)
15 PRK14131 N-acetylneuraminic ac 99.1 1.1E-08 2.3E-13 96.4 20.0 218 105-339 36-328 (376)
16 PHA03098 kelch-like protein; P 99.0 7.7E-09 1.7E-13 102.2 17.1 212 119-358 266-495 (534)
17 PLN02193 nitrile-specifier pro 99.0 4.8E-08 1E-12 94.6 21.0 206 118-340 138-360 (470)
18 PLN02153 epithiospecifier prot 99.0 8E-08 1.7E-12 89.4 19.8 202 124-340 4-234 (341)
19 PHA02790 Kelch-like protein; P 99.0 3.1E-08 6.6E-13 96.2 17.3 162 171-359 285-455 (480)
20 PF12937 F-box-like: F-box-lik 98.7 1.8E-09 4E-14 68.9 0.2 41 4-44 2-42 (47)
21 PF00646 F-box: F-box domain; 98.7 6.9E-09 1.5E-13 66.7 1.1 44 4-47 4-47 (48)
22 PRK14131 N-acetylneuraminic ac 98.7 5.2E-06 1.1E-10 78.2 20.7 155 173-337 189-374 (376)
23 TIGR03547 muta_rot_YjhT mutatr 98.6 7.5E-06 1.6E-10 76.3 20.4 134 173-320 168-329 (346)
24 KOG4693 Uncharacterized conser 98.6 1.1E-06 2.5E-11 74.9 13.2 227 101-342 28-287 (392)
25 smart00256 FBOX A Receptor for 98.6 7.2E-09 1.6E-13 64.1 -0.0 39 6-44 1-39 (41)
26 TIGR03548 mutarot_permut cycli 98.6 5E-06 1.1E-10 76.8 18.0 148 174-339 40-202 (323)
27 KOG1230 Protein containing rep 98.5 4.1E-06 8.9E-11 75.8 14.9 214 117-342 98-351 (521)
28 KOG4693 Uncharacterized conser 98.2 5.1E-05 1.1E-09 65.1 12.8 185 118-319 106-309 (392)
29 KOG0379 Kelch repeat-containin 98.0 0.0012 2.6E-08 64.2 19.8 207 118-340 89-310 (482)
30 KOG0379 Kelch repeat-containin 97.8 0.00085 1.8E-08 65.2 16.2 175 155-342 70-260 (482)
31 KOG0281 Beta-TrCP (transducin 97.8 0.00032 7E-09 62.3 11.7 40 5-44 77-120 (499)
32 KOG1230 Protein containing rep 97.6 0.0029 6.4E-08 57.8 15.4 168 148-363 71-255 (521)
33 PF13964 Kelch_6: Kelch motif 97.3 0.00066 1.4E-08 43.6 4.9 44 204-247 4-48 (50)
34 KOG2120 SCF ubiquitin ligase, 97.1 0.00012 2.6E-09 64.3 0.0 37 5-41 100-136 (419)
35 PF01344 Kelch_1: Kelch motif; 97.1 0.0015 3.2E-08 41.2 5.1 43 204-246 4-47 (47)
36 PF07646 Kelch_2: Kelch motif; 96.5 0.0078 1.7E-07 38.3 5.0 41 204-244 4-46 (49)
37 PF08450 SGL: SMP-30/Gluconola 96.3 0.71 1.5E-05 40.6 21.3 204 103-341 7-223 (246)
38 PF13360 PQQ_2: PQQ-like domai 95.9 0.99 2.1E-05 39.1 18.0 192 106-337 35-236 (238)
39 KOG2997 F-box protein FBX9 [Ge 95.9 0.0027 5.8E-08 56.1 0.5 46 4-49 108-158 (366)
40 KOG0274 Cdc4 and related F-box 95.8 0.91 2E-05 44.8 17.7 40 5-44 110-149 (537)
41 PF13418 Kelch_4: Galactose ox 95.5 0.025 5.3E-07 35.9 3.9 42 205-246 5-48 (49)
42 PF02191 OLF: Olfactomedin-lik 95.0 1.6 3.4E-05 38.5 15.0 126 203-340 70-212 (250)
43 PF13360 PQQ_2: PQQ-like domai 95.0 2.2 4.7E-05 36.9 17.2 139 174-338 4-147 (238)
44 PF07250 Glyoxal_oxid_N: Glyox 94.9 0.67 1.5E-05 40.5 12.2 170 173-358 46-226 (243)
45 KOG1274 WD40 repeat protein [G 94.9 3.2 6.9E-05 42.4 17.9 204 104-336 11-223 (933)
46 smart00284 OLF Olfactomedin-li 94.7 2.7 5.9E-05 36.9 15.3 126 203-340 75-217 (255)
47 PF07893 DUF1668: Protein of u 94.6 2.3 4.9E-05 39.6 15.8 148 106-273 75-252 (342)
48 COG3055 Uncharacterized protei 94.4 0.53 1.2E-05 42.8 10.3 229 114-361 55-360 (381)
49 KOG0310 Conserved WD40 repeat- 94.2 1.9 4E-05 40.7 13.9 190 123-352 8-207 (487)
50 PLN00181 protein SPA1-RELATED; 94.1 8.7 0.00019 40.3 21.6 190 109-333 547-740 (793)
51 COG4946 Uncharacterized protei 94.1 5.2 0.00011 38.0 16.3 37 304-341 269-305 (668)
52 KOG4152 Host cell transcriptio 94.0 1.5 3.3E-05 41.9 12.9 163 117-295 57-246 (830)
53 smart00612 Kelch Kelch domain. 93.6 0.15 3.3E-06 31.4 4.2 21 171-191 13-33 (47)
54 PRK11138 outer membrane biogen 93.4 7.3 0.00016 36.9 19.6 191 106-336 119-317 (394)
55 PRK11138 outer membrane biogen 93.3 7.4 0.00016 36.9 19.3 108 205-337 250-359 (394)
56 PF13964 Kelch_6: Kelch motif 93.2 0.24 5.2E-06 31.4 4.7 23 116-138 27-49 (50)
57 KOG2055 WD40 repeat protein [G 92.8 8.9 0.00019 36.3 15.7 120 204-339 261-382 (514)
58 PLN02772 guanylate kinase 92.4 1.1 2.3E-05 42.1 9.3 77 203-284 26-107 (398)
59 TIGR02658 TTQ_MADH_Hv methylam 92.0 11 0.00023 35.2 20.0 202 116-337 76-293 (352)
60 PF01344 Kelch_1: Kelch motif; 91.9 0.38 8.3E-06 29.9 4.3 36 155-191 11-46 (47)
61 KOG0289 mRNA splicing factor [ 91.8 3.3 7.1E-05 38.7 11.5 116 207-340 354-471 (506)
62 PF05096 Glu_cyclase_2: Glutam 91.5 7.2 0.00016 34.5 13.0 105 210-334 54-160 (264)
63 smart00612 Kelch Kelch domain. 91.3 0.72 1.6E-05 28.3 5.2 34 214-248 2-36 (47)
64 PF13415 Kelch_3: Galactose ox 91.2 0.57 1.2E-05 29.5 4.5 37 211-247 1-39 (49)
65 TIGR03300 assembly_YfgL outer 91.1 8.3 0.00018 36.2 14.4 109 205-336 59-168 (377)
66 PF10282 Lactonase: Lactonase, 90.8 14 0.0003 34.3 21.7 172 145-339 145-332 (345)
67 TIGR03074 PQQ_membr_DH membran 90.5 6.4 0.00014 40.7 13.6 123 203-338 186-351 (764)
68 PF10282 Lactonase: Lactonase, 90.2 10 0.00022 35.2 13.9 117 211-340 154-286 (345)
69 COG4257 Vgb Streptogramin lyas 89.1 11 0.00023 33.5 11.8 119 106-249 198-318 (353)
70 PF07762 DUF1618: Protein of u 89.0 3.4 7.3E-05 32.3 8.3 70 229-299 7-98 (131)
71 PF07893 DUF1668: Protein of u 88.0 17 0.00037 33.8 13.5 105 229-339 87-215 (342)
72 KOG0316 Conserved WD40 repeat- 86.6 20 0.00044 31.0 15.0 26 106-131 27-53 (307)
73 PF02897 Peptidase_S9_N: Proly 86.3 31 0.00067 32.8 18.4 118 209-339 285-412 (414)
74 TIGR01640 F_box_assoc_1 F-box 86.0 22 0.00047 30.7 12.6 117 209-339 3-135 (230)
75 KOG4152 Host cell transcriptio 85.5 2.4 5.2E-05 40.5 6.3 77 184-272 18-99 (830)
76 TIGR03300 assembly_YfgL outer 85.2 33 0.00072 32.1 20.9 190 106-335 104-301 (377)
77 KOG0294 WD40 repeat-containing 84.8 25 0.00054 31.8 11.8 111 206-337 47-163 (362)
78 KOG0647 mRNA export protein (c 84.5 9.7 0.00021 34.1 9.2 75 264-342 39-113 (347)
79 PF13418 Kelch_4: Galactose ox 84.3 2.3 5E-05 26.6 4.2 34 157-191 14-47 (49)
80 KOG0645 WD40 repeat protein [G 83.5 22 0.00049 31.4 10.8 85 265-352 27-116 (312)
81 PRK11028 6-phosphogluconolacto 83.3 37 0.00079 31.1 19.5 143 173-338 57-214 (330)
82 PRK11028 6-phosphogluconolacto 83.2 36 0.00078 31.1 13.3 118 211-339 185-314 (330)
83 cd01206 Homer Homer type EVH1 81.7 3.2 6.9E-05 31.0 4.4 40 117-164 11-51 (111)
84 KOG0299 U3 snoRNP-associated p 81.7 49 0.0011 31.5 17.9 105 207-321 332-445 (479)
85 COG2706 3-carboxymuconate cycl 81.7 43 0.00093 30.8 15.2 117 211-340 155-285 (346)
86 KOG4341 F-box protein containi 81.6 0.41 8.9E-06 44.6 -0.3 37 4-40 73-109 (483)
87 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.4 45 0.00097 33.1 13.8 120 204-338 62-196 (527)
88 PF06433 Me-amine-dh_H: Methyl 79.6 51 0.0011 30.4 15.1 120 206-338 188-327 (342)
89 KOG2437 Muskelin [Signal trans 79.4 4.4 9.5E-05 38.8 5.6 148 119-273 231-394 (723)
90 PF07646 Kelch_2: Kelch motif; 79.2 3.5 7.6E-05 25.8 3.6 23 169-191 26-48 (49)
91 cd01207 Ena-Vasp Enabled-VASP- 78.8 9.8 0.00021 28.8 6.3 42 118-164 10-51 (111)
92 PF13415 Kelch_3: Galactose ox 78.3 3.6 7.8E-05 25.8 3.4 23 169-191 15-37 (49)
93 TIGR02658 TTQ_MADH_Hv methylam 77.9 60 0.0013 30.3 14.0 115 208-338 202-338 (352)
94 COG3386 Gluconolactonase [Carb 77.7 47 0.001 30.3 11.7 108 212-338 37-158 (307)
95 KOG0266 WD40 repeat-containing 77.3 73 0.0016 30.9 19.7 192 105-336 168-369 (456)
96 PF08450 SGL: SMP-30/Gluconola 77.2 49 0.0011 28.8 15.6 105 211-338 11-129 (246)
97 PF05096 Glu_cyclase_2: Glutam 76.7 54 0.0012 29.1 16.7 144 165-338 60-210 (264)
98 PRK05137 tolB translocation pr 76.5 74 0.0016 30.5 21.5 188 116-339 225-420 (435)
99 TIGR03866 PQQ_ABC_repeats PQQ- 76.3 54 0.0012 28.9 23.4 118 211-341 167-290 (300)
100 KOG2055 WD40 repeat protein [G 74.5 12 0.00025 35.5 6.8 69 266-339 226-296 (514)
101 KOG3545 Olfactomedin and relat 73.8 56 0.0012 28.6 10.3 125 204-340 70-211 (249)
102 KOG0291 WD40-repeat-containing 73.1 1.2E+02 0.0025 31.2 20.5 110 204-331 437-550 (893)
103 PRK04043 tolB translocation pr 71.4 91 0.002 29.9 12.5 101 229-341 214-319 (419)
104 KOG4649 PQQ (pyrrolo-quinoline 71.2 75 0.0016 28.2 16.0 64 262-333 289-353 (354)
105 KOG2437 Muskelin [Signal trans 71.0 8.2 0.00018 37.1 5.0 130 203-339 262-420 (723)
106 smart00564 PQQ beta-propeller 69.8 12 0.00026 20.7 4.0 23 315-337 8-30 (33)
107 KOG1310 WD40 repeat protein [G 69.7 79 0.0017 31.0 11.2 115 106-237 60-179 (758)
108 cd00200 WD40 WD40 domain, foun 69.6 70 0.0015 27.2 20.6 94 229-336 116-212 (289)
109 PTZ00421 coronin; Provisional 69.4 1.2E+02 0.0026 29.8 13.5 64 265-335 138-202 (493)
110 KOG0315 G-protein beta subunit 69.2 80 0.0017 27.7 18.6 104 229-338 147-253 (311)
111 KOG0295 WD40 repeat-containing 67.5 40 0.00086 31.1 8.4 68 265-338 304-371 (406)
112 PLN02919 haloacid dehalogenase 67.0 2E+02 0.0043 31.5 25.3 221 102-338 574-840 (1057)
113 KOG0315 G-protein beta subunit 66.8 90 0.002 27.4 12.1 139 172-333 60-199 (311)
114 TIGR03866 PQQ_ABC_repeats PQQ- 66.7 90 0.0019 27.4 20.9 177 115-335 9-191 (300)
115 PF01011 PQQ: PQQ enzyme repea 66.4 14 0.00031 21.6 3.9 24 315-338 2-25 (38)
116 KOG0293 WD40 repeat-containing 65.9 1.2E+02 0.0027 28.6 11.8 70 263-338 405-477 (519)
117 PF13854 Kelch_5: Kelch motif 65.7 15 0.00033 22.0 4.0 36 202-237 5-41 (42)
118 PF13570 PQQ_3: PQQ-like domai 65.5 11 0.00025 22.2 3.4 26 205-237 15-40 (40)
119 KOG0639 Transducin-like enhanc 64.8 1.1E+02 0.0024 29.7 11.0 64 210-284 475-540 (705)
120 COG3055 Uncharacterized protei 63.6 48 0.001 30.6 8.2 91 126-224 256-362 (381)
121 PLN02919 haloacid dehalogenase 63.4 2.3E+02 0.005 31.0 23.8 68 263-335 813-892 (1057)
122 KOG2321 WD40 repeat protein [G 62.7 70 0.0015 31.5 9.4 114 212-338 146-265 (703)
123 KOG0266 WD40 repeat-containing 61.5 1.6E+02 0.0035 28.5 18.7 198 102-334 209-412 (456)
124 COG1520 FOG: WD40-like repeat 61.1 1.4E+02 0.0031 27.8 14.5 139 173-338 35-178 (370)
125 PF03088 Str_synth: Strictosid 59.8 24 0.00052 25.6 4.7 16 323-338 37-52 (89)
126 KOG4378 Nuclear protein COP1 [ 59.6 27 0.00058 33.6 6.1 30 305-334 254-283 (673)
127 PF07433 DUF1513: Protein of u 59.4 1.4E+02 0.0031 27.2 17.5 210 110-338 20-254 (305)
128 KOG0286 G-protein beta subunit 59.2 1.4E+02 0.003 27.0 16.4 186 116-334 76-262 (343)
129 cd00200 WD40 WD40 domain, foun 58.2 1.2E+02 0.0025 25.8 20.9 94 229-336 158-254 (289)
130 KOG1273 WD40 repeat protein [G 57.6 1.5E+02 0.0033 27.0 14.9 125 229-358 176-313 (405)
131 COG4946 Uncharacterized protei 57.6 1.9E+02 0.0041 28.1 22.4 150 104-285 274-431 (668)
132 PF02239 Cytochrom_D1: Cytochr 57.3 96 0.0021 29.2 9.6 107 212-337 5-114 (369)
133 KOG0283 WD40 repeat-containing 56.1 27 0.0006 35.3 5.9 68 264-338 421-488 (712)
134 PRK04792 tolB translocation pr 55.5 2E+02 0.0044 27.8 19.3 114 211-340 228-347 (448)
135 KOG0282 mRNA splicing factor [ 53.2 66 0.0014 30.8 7.5 33 307-339 438-471 (503)
136 KOG2315 Predicted translation 52.6 2.4E+02 0.0052 27.8 14.8 141 106-283 229-390 (566)
137 PF13013 F-box-like_2: F-box-l 51.5 4.6 0.0001 30.5 -0.1 28 4-31 23-50 (109)
138 PF12458 DUF3686: ATPase invol 50.8 1.6E+02 0.0034 28.1 9.5 134 106-283 237-384 (448)
139 KOG1036 Mitotic spindle checkp 50.5 2E+02 0.0042 26.1 11.7 117 229-362 76-209 (323)
140 PRK04922 tolB translocation pr 50.4 2.4E+02 0.0051 27.1 21.3 144 172-339 227-376 (433)
141 KOG0289 mRNA splicing factor [ 49.5 72 0.0016 30.3 7.0 64 264-333 358-421 (506)
142 PTZ00420 coronin; Provisional 49.4 2.9E+02 0.0063 27.8 21.6 117 211-338 178-300 (568)
143 PRK00178 tolB translocation pr 49.1 2.4E+02 0.0053 26.8 21.6 189 116-339 222-414 (430)
144 KOG2048 WD40 repeat protein [G 48.1 3.1E+02 0.0067 27.7 16.1 55 276-331 354-411 (691)
145 KOG0649 WD40 repeat protein [G 47.4 58 0.0013 28.5 5.7 64 275-338 81-151 (325)
146 PRK04792 tolB translocation pr 47.3 2.7E+02 0.0059 26.9 21.8 188 116-339 241-433 (448)
147 KOG0296 Angio-associated migra 47.2 2.4E+02 0.0052 26.2 13.0 99 228-338 86-185 (399)
148 KOG0301 Phospholipase A2-activ 47.0 3.3E+02 0.0071 27.7 11.7 86 229-331 201-288 (745)
149 KOG0300 WD40 repeat-containing 47.0 70 0.0015 29.0 6.3 57 276-339 379-436 (481)
150 KOG0278 Serine/threonine kinas 45.6 1.2E+02 0.0026 26.7 7.3 31 264-294 278-308 (334)
151 KOG2106 Uncharacterized conser 45.3 3.1E+02 0.0066 26.9 18.1 22 228-249 308-329 (626)
152 PRK03629 tolB translocation pr 44.9 2.9E+02 0.0063 26.5 21.4 186 117-339 179-371 (429)
153 PRK13684 Ycf48-like protein; P 44.8 2.6E+02 0.0056 25.8 11.9 139 176-340 153-297 (334)
154 KOG0319 WD40-repeat-containing 44.7 2.5E+02 0.0054 28.7 10.2 99 229-336 41-140 (775)
155 TIGR02800 propeller_TolB tol-p 44.1 2.8E+02 0.0061 26.1 21.5 144 173-339 214-362 (417)
156 KOG2321 WD40 repeat protein [G 44.1 3.4E+02 0.0074 27.1 13.1 77 101-185 181-262 (703)
157 PRK04043 tolB translocation pr 44.0 3E+02 0.0065 26.4 21.5 187 116-340 212-409 (419)
158 KOG0650 WD40 repeat nucleolar 43.5 33 0.00072 33.8 4.1 36 303-338 609-646 (733)
159 TIGR03032 conserved hypothetic 43.1 1.1E+02 0.0024 28.0 7.0 55 204-273 205-260 (335)
160 PTZ00334 trans-sialidase; Prov 42.4 1.7E+02 0.0037 30.5 9.1 83 206-294 264-349 (780)
161 KOG0293 WD40 repeat-containing 41.8 65 0.0014 30.4 5.5 69 264-338 323-391 (519)
162 cd00216 PQQ_DH Dehydrogenases 41.6 3.5E+02 0.0076 26.5 16.7 15 324-338 257-271 (488)
163 KOG1539 WD repeat protein [Gen 41.3 4.4E+02 0.0095 27.6 11.7 119 208-337 456-612 (910)
164 COG0823 TolB Periplasmic compo 41.2 1.9E+02 0.0041 27.8 9.0 102 229-342 219-325 (425)
165 TIGR02800 propeller_TolB tol-p 41.1 3.1E+02 0.0068 25.8 20.8 186 117-338 214-404 (417)
166 KOG0294 WD40 repeat-containing 40.7 2.9E+02 0.0063 25.3 12.5 108 149-284 174-282 (362)
167 PRK02889 tolB translocation pr 40.1 3.4E+02 0.0074 25.9 14.2 116 211-342 207-327 (427)
168 PF15492 Nbas_N: Neuroblastoma 39.8 2.5E+02 0.0053 25.2 8.6 72 263-338 7-80 (282)
169 PF00400 WD40: WD domain, G-be 39.7 72 0.0016 18.0 6.8 38 291-329 1-39 (39)
170 PF13859 BNR_3: BNR repeat-lik 39.6 1.5E+02 0.0033 27.1 7.7 82 206-294 125-212 (310)
171 KOG1963 WD40 repeat protein [G 39.5 2.4E+02 0.0051 29.3 9.4 105 228-337 432-545 (792)
172 KOG2502 Tub family proteins [G 38.7 20 0.00044 32.8 1.8 36 4-39 46-89 (355)
173 KOG0318 WD40 repeat stress pro 37.8 2E+02 0.0044 28.2 8.2 33 304-336 490-522 (603)
174 KOG0296 Angio-associated migra 37.7 3.4E+02 0.0075 25.3 13.7 137 173-335 86-224 (399)
175 KOG0319 WD40-repeat-containing 37.0 4.8E+02 0.01 26.8 13.7 191 102-334 25-225 (775)
176 KOG1332 Vesicle coat complex C 36.6 3E+02 0.0065 24.3 15.3 72 265-339 222-295 (299)
177 PRK05137 tolB translocation pr 36.0 4E+02 0.0086 25.5 22.1 187 116-338 181-373 (435)
178 PF07250 Glyoxal_oxid_N: Glyox 35.2 1.8E+02 0.004 25.5 7.2 96 229-331 47-147 (243)
179 PTZ00421 coronin; Provisional 32.9 4.9E+02 0.011 25.6 22.6 113 211-338 179-297 (493)
180 KOG2096 WD40 repeat protein [G 32.6 4E+02 0.0086 24.5 10.7 37 304-340 190-226 (420)
181 KOG0271 Notchless-like WD40 re 32.3 1.2E+02 0.0025 28.5 5.5 56 274-335 136-191 (480)
182 KOG1009 Chromatin assembly com 31.4 2.6E+02 0.0057 26.4 7.6 76 264-340 76-162 (434)
183 KOG3926 F-box proteins [Amino 30.4 24 0.00051 31.2 0.9 37 4-40 203-240 (332)
184 PF15408 PH_7: Pleckstrin homo 30.2 11 0.00024 26.7 -0.9 23 21-43 77-99 (104)
185 PTZ00420 coronin; Provisional 29.8 5.9E+02 0.013 25.6 14.0 65 265-336 137-202 (568)
186 cd00216 PQQ_DH Dehydrogenases 29.6 5.5E+02 0.012 25.1 15.9 27 312-338 405-431 (488)
187 KOG3881 Uncharacterized conser 29.5 4.9E+02 0.011 24.6 14.2 60 172-238 172-236 (412)
188 PF06058 DCP1: Dcp1-like decap 29.5 72 0.0016 24.6 3.3 19 324-342 30-48 (122)
189 PRK04922 tolB translocation pr 29.4 5.1E+02 0.011 24.8 20.9 188 116-339 227-419 (433)
190 PF11012 DUF2850: Protein of u 29.3 1.7E+02 0.0036 20.7 4.8 35 183-220 4-38 (79)
191 PF14157 YmzC: YmzC-like prote 29.3 87 0.0019 20.9 3.1 16 324-339 42-57 (63)
192 KOG0265 U5 snRNP-specific prot 28.4 3.7E+02 0.008 24.4 7.8 66 264-336 58-125 (338)
193 KOG0772 Uncharacterized conser 28.0 1.9E+02 0.0042 28.2 6.4 143 211-365 328-481 (641)
194 PF13449 Phytase-like: Esteras 27.7 4.8E+02 0.01 23.9 13.3 110 211-320 95-233 (326)
195 cd00837 EVH1 EVH1 (Enabled, Va 27.6 2.6E+02 0.0056 20.7 6.3 40 117-164 9-48 (104)
196 PF06433 Me-amine-dh_H: Methyl 27.3 5.1E+02 0.011 24.1 20.0 194 118-338 18-220 (342)
197 PF12894 Apc4_WD40: Anaphase-p 26.6 1.7E+02 0.0036 18.2 4.9 30 304-333 14-43 (47)
198 KOG0316 Conserved WD40 repeat- 26.5 4.5E+02 0.0097 23.1 10.4 95 228-335 123-217 (307)
199 PF14339 DUF4394: Domain of un 26.3 2.3E+02 0.0051 24.7 6.2 55 105-162 36-92 (236)
200 PRK00178 tolB translocation pr 26.3 5.7E+02 0.012 24.3 21.3 145 172-339 222-371 (430)
201 KOG0649 WD40 repeat protein [G 25.8 4.7E+02 0.01 23.1 11.7 109 212-342 127-247 (325)
202 PRK01742 tolB translocation pr 25.6 6E+02 0.013 24.3 18.5 140 172-338 227-368 (429)
203 PF03178 CPSF_A: CPSF A subuni 25.2 5.2E+02 0.011 23.4 13.3 74 259-340 93-168 (321)
204 PF08268 FBA_3: F-box associat 25.1 3.1E+02 0.0068 20.9 9.5 97 170-270 17-118 (129)
205 PLN02772 guanylate kinase 24.2 4.6E+02 0.0099 25.0 8.1 60 171-237 49-109 (398)
206 KOG0639 Transducin-like enhanc 23.4 3.3E+02 0.0072 26.7 7.0 101 229-335 441-543 (705)
207 PF00568 WH1: WH1 domain; Int 23.4 2E+02 0.0044 21.5 4.8 39 117-164 16-55 (111)
208 KOG1274 WD40 repeat protein [G 22.8 9.4E+02 0.02 25.6 14.8 109 207-337 61-174 (933)
209 PF12768 Rax2: Cortical protei 22.3 4E+02 0.0086 24.0 7.2 66 171-245 14-81 (281)
210 PF02393 US22: US22 like; Int 21.5 1.9E+02 0.0041 21.9 4.5 26 314-339 82-107 (125)
211 PF07569 Hira: TUP1-like enhan 21.4 5.3E+02 0.011 22.1 7.9 77 261-340 18-104 (219)
212 TIGR03074 PQQ_membr_DH membran 21.2 9.8E+02 0.021 25.2 14.0 30 107-136 194-225 (764)
213 KOG2394 WD40 protein DMR-N9 [G 20.3 3.1E+02 0.0067 27.1 6.2 62 229-298 313-383 (636)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=3.1e-33 Score=245.24 Aligned_cols=219 Identities=26% Similarity=0.420 Sum_probs=163.5
Q ss_pred eeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 103 IGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 103 ~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
+++||||||+... ..++||||+||+++.||+++.+........++||||+.+++||||++...........++||++++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~ 79 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGS 79 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCC
Confidence 4799999998865 789999999999999997764321112226799999999999999997643333457899999999
Q ss_pred CcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEE
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~ 261 (378)
++||.+... +. .... ...+|++||.+||++....+. ....|++||+.+|+|+ .+++|...... .... .|+
T Consensus 80 ~~Wr~~~~~---~~--~~~~-~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~-~~~~-~L~ 150 (230)
T TIGR01640 80 NSWRTIECS---PP--HHPL-KSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDS-VDYL-SLI 150 (230)
T ss_pred CCccccccC---CC--Cccc-cCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCcccccc-ccce-EEE
Confidence 999999754 32 2222 223999999999999764321 1137999999999999 58999765321 1234 789
Q ss_pred EECCeEEEEEcCCC--cEEEEEeccCCCCcceEEEEEecC-CC----ceeEEEEEEeCCCEEEEEeCC--Ce-EEEEECC
Q 044435 262 VLKGCLSLLCKYSE--PWDLWVMKEYGVKDSWSKLFTMNE-NG----YRVIPLAFSSRGDKVLFQKNS--KD-HCWYHLD 331 (378)
Q Consensus 262 ~~~G~L~~~~~~~~--~l~iW~l~~~~~~~~W~~~~~i~~-~~----~~~~~~~~~~~g~~v~~~~~~--~~-~~~ydl~ 331 (378)
+++|+|+++..... +++||+|++++.. .|++.++|+. .. ....+.++..+|+ |++.... .. ++.||++
T Consensus 151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeCCCCceEEEEEecc
Confidence 99999999998643 7999999988754 5999999984 22 1145788888888 5554443 34 9999998
Q ss_pred CC
Q 044435 332 MH 333 (378)
Q Consensus 332 ~~ 333 (378)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.61 E-value=7.1e-14 Score=115.51 Aligned_cols=141 Identities=30% Similarity=0.537 Sum_probs=97.8
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCC--cEEEEEe
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE--PWDLWVM 282 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~--~l~iW~l 282 (378)
+|++||.+||++....... ...|++||+.+|+| ..+++|...... .... .|++. +|+||++..... .++||+|
T Consensus 1 gV~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~-~~~~-~L~~v~~~~L~~~~~~~~~~~~~IWvm 77 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDD-DDSV-SLSVVRGDCLCVLYQCDETSKIEIWVM 77 (164)
T ss_pred CEEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCcc-CCEE-EEEEecCCEEEEEEeccCCccEEEEEE
Confidence 6899999999998764321 12799999999999 788999877621 2334 66554 779999976443 7999999
Q ss_pred ccCCC-CcceEEEEEecC-CCc--e----eEEEEEEeCCCEEEEEeC-C------CeEEEEECCCCeEEEEeEeC---Cc
Q 044435 283 KEYGV-KDSWSKLFTMNE-NGY--R----VIPLAFSSRGDKVLFQKN-S------KDHCWYHLDMHRVESFLVKG---PS 344 (378)
Q Consensus 283 ~~~~~-~~~W~~~~~i~~-~~~--~----~~~~~~~~~g~~v~~~~~-~------~~~~~ydl~~~~~~~v~~~~---~~ 344 (378)
++++. ..+|++..+|+. ... . ...+-+..+++ +++... . ..++.|+ +++..+++.+.. ..
T Consensus 78 ~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~-vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~ 155 (164)
T PF07734_consen 78 KKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKK-VLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCW 155 (164)
T ss_pred eeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCe-EEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCC
Confidence 97653 678999999987 331 1 12233333444 444432 2 2377887 778888887743 22
Q ss_pred -ceEEeeec
Q 044435 345 -DVHVCVDT 352 (378)
Q Consensus 345 -~~~~y~~s 352 (378)
.++.|+||
T Consensus 156 ~~~~~YvpS 164 (164)
T PF07734_consen 156 PSICNYVPS 164 (164)
T ss_pred CCEEEECCC
Confidence 78899987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.53 E-value=2.7e-13 Score=107.40 Aligned_cols=107 Identities=25% Similarity=0.430 Sum_probs=81.0
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEe
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVM 282 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l 282 (378)
|+++||.+||++... ......|++||+++|+|+.|++|...... .... .|.+.+|+|+++..... .++||+|
T Consensus 1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~-~~~~-~L~~~~G~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSS-DCSS-TLIEYKGKLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccc-cCcc-EEEEeCCeEEEEEecCCCCcceEEEEEe
Confidence 689999999999872 12236999999999999999998221111 2334 88999999999987654 4999999
Q ss_pred ccCCCCcceEEEEEe-cC-C--C---ceeEEEEEEeCCCEEEE
Q 044435 283 KEYGVKDSWSKLFTM-NE-N--G---YRVIPLAFSSRGDKVLF 318 (378)
Q Consensus 283 ~~~~~~~~W~~~~~i-~~-~--~---~~~~~~~~~~~g~~v~~ 318 (378)
+|++. .+|++.+.+ +. . . ....+.++.++|++|+.
T Consensus 77 eD~~k-~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 77 EDYEK-QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ecccc-ceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 99864 679988653 33 1 1 35778899999996665
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.51 E-value=2.9e-12 Score=126.02 Aligned_cols=199 Identities=9% Similarity=0.122 Sum_probs=131.0
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..+..+||.+++|..+|+++.++.. ++.....+...|++.. ........+++|++.++.|+.++.+ |.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~-------~~~~~~~g~IYviGG~--~~~~~~~sve~Ydp~~~~W~~~~~m---p~ 387 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCR-------FSLAVIDDTIYAIGGQ--NGTNVERTIECYTMGDDKWKMLPDM---PI 387 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhc-------eeEEEECCEEEEECCc--CCCCCCceEEEEECCCCeEEECCCC---Cc
Confidence 3477899999999999999865321 1111123344455543 2222345799999999999999888 54
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCc-----------------ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDE-----------------MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELS 258 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~-----------------~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~ 258 (378)
.......+.++|+||.+++..... .....+.+||+.+++|+.+ ++|.... ..
T Consensus 388 ----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-----~~- 457 (557)
T PHA02713 388 ----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-----RP- 457 (557)
T ss_pred ----ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-----cC-
Confidence 233445788999999999764210 0125799999999999988 6654432 22
Q ss_pred eEEEECCeEEEEEcCCC-c--E-EEEEeccCCCC-cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC--eEEEEEC
Q 044435 259 GVYVLKGCLSLLCKYSE-P--W-DLWVMKEYGVK-DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK--DHCWYHL 330 (378)
Q Consensus 259 ~l~~~~G~L~~~~~~~~-~--l-~iW~l~~~~~~-~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~--~~~~ydl 330 (378)
.+++.+|+||++++..+ . . .+-..+.. . +.|+.+..++. +. ...+++. +|.+.++++.++ .+-.||+
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~--~~~~W~~~~~m~~~r~--~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN--TYNGWELITTTESRLS--ALHTILH-DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCC--CCCCeeEccccCcccc--cceeEEE-CCEEEEEeeecceeehhhcCc
Confidence 67889999999987643 1 1 23333331 3 47999887776 33 1122222 566455554343 4889999
Q ss_pred CCCeEEEEeEeC
Q 044435 331 DMHRVESFLVKG 342 (378)
Q Consensus 331 ~~~~~~~v~~~~ 342 (378)
+|++|+.+.-++
T Consensus 533 ~~~~W~~~~~~~ 544 (557)
T PHA02713 533 YTYEWNHICHQH 544 (557)
T ss_pred ccccccchhhhc
Confidence 999999986554
No 5
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.48 E-value=1.7e-11 Score=111.80 Aligned_cols=297 Identities=14% Similarity=0.108 Sum_probs=151.4
Q ss_pred CCC-CCCCHHHHHHHHhcCC-ccccceeeecchhhhcccCChhHHHHHHhhcccCCCCeEEEEEecCCCCceeEEEeccC
Q 044435 1 MAT-WKLPLDVIIDILIRLP-GKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSL 78 (378)
Q Consensus 1 m~~-~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (378)
|+. +.||+|||..|..||| ..+++|+|+||++||+.+.... . .++.+..|+++...- .+... +.+ +.
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~--~~~~~~~~~~~~~~~-~~~~~--~~~-~~ 69 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----K--KNPFRTRPLILFNPI-NPSET--LTD-DR 69 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----c--cCCcccccccccCcc-cCCCC--ccc-cc
Confidence 555 6799999999999997 6699999999999999877421 0 000001122222110 00000 000 00
Q ss_pred CCCCCCCCCCceeecccCccceEEeeeccceEEEee---cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC
Q 044435 79 DSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKN---YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS 155 (378)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~~GLl~l~~---~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~ 155 (378)
..+.. ....+....+ ..+....++..|.|.... .+..+.+.||.++.-..+|+-.. ...-|-+.+.+
T Consensus 70 ~~~~~--~~~~ls~~~~-~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~l-------nll~f~v~ei~ 139 (373)
T PLN03215 70 SYISR--PGAFLSRAAF-FRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESV-------DLLEFTVSEIR 139 (373)
T ss_pred ccccc--ccceeeeeEE-EEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccc-------eeeeeEEEEcc
Confidence 00000 0000000000 000011234678877664 34778999999999776664221 11112111111
Q ss_pred CC---------------eE-EEEEEEecCCC-cceEEEEEEc------CCCcEEecCcccCCCccccccccCCcceeeCC
Q 044435 156 DD---------------YK-LVRIHVFKSPV-YHIEATVYGL------KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNG 212 (378)
Q Consensus 156 ~~---------------yk-vv~~~~~~~~~-~~~~~~vyss------~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G 212 (378)
.. |+ ++.+.....++ ....+-|+.. ..++|..++.+ .. ....-|+++|
T Consensus 140 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~---~~------~~~DIi~~kG 210 (373)
T PLN03215 140 EAYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQM---GY------HFSDIIVHKG 210 (373)
T ss_pred ceEEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCC---Cc------eeeEEEEECC
Confidence 11 21 11111111111 1112222222 14788887654 22 1244799999
Q ss_pred eEEEEeecCCCcccceEEEEEEcCCceeeeecC--CCCCCC-CCCcccceEEEECCeEEEEEcCC---------------
Q 044435 213 ALHWLANQNQDEMINDLILAFDLNIETFYSMPM--PGFGNE-GGGGELSGVYVLKGCLSLLCKYS--------------- 274 (378)
Q Consensus 213 ~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l--P~~~~~-~~~~~~~~l~~~~G~L~~~~~~~--------------- 274 (378)
++|.+...+ .+.++|..-+ .+.+.. ...... ...... .|+++.|.|++|....
T Consensus 211 kfYAvD~~G-------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~-yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~ 281 (373)
T PLN03215 211 QTYALDSIG-------IVYWINSDLE-FSRFGTSLDENITDGCWTGDR-RFVECCGELYIVERLPKESTWKRKADGFEYS 281 (373)
T ss_pred EEEEEcCCC-------eEEEEecCCc-eeeecceecccccCCcccCce-eEEEECCEEEEEEEEccCccccccccccccc
Confidence 999995543 4666664321 222211 100100 001233 7899999999988631
Q ss_pred --CcEEEEEeccCCCCcceEEEEEecC-CCce--eEEEEEE------eCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 275 --EPWDLWVMKEYGVKDSWSKLFTMNE-NGYR--VIPLAFS------SRGDKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 275 --~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~--~~~~~~~------~~g~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
..++|+.++.. ...|+++..++. .++. -...++. -.++.|++..+. -..+||++.++...+.
T Consensus 282 ~t~~f~VfklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 282 RTVGFKVYKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSSIE 354 (373)
T ss_pred ceeEEEEEEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccceE
Confidence 15788888753 357999988875 3211 1111111 135668887544 4889999999977774
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.45 E-value=4.4e-12 Score=124.32 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=143.5
Q ss_pred EeeeccceEEEee--c-----CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceE
Q 044435 102 IIGSCNGLLALKN--Y-----PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIE 174 (378)
Q Consensus 102 ~~~s~~GLl~l~~--~-----~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 174 (378)
.++..+|.|.+.+ + .+....+||.+++|..+|++...+. .+|.....+.-.+|+.. ++......
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-------~~~v~~l~g~iYavGG~--dg~~~l~s 397 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-------DFGVAVLDGKLYAVGGF--DGEKSLNS 397 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-------cceeEEECCEEEEEecc--cccccccc
Confidence 4455566655443 1 2357899999999999999987542 23333333444555544 34455668
Q ss_pred EEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCC
Q 044435 175 ATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGG 253 (378)
Q Consensus 175 ~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~ 253 (378)
+|.|++.++.|..++.| .........+.++|.||.+++..........+.+||+.+++|+.+ +++....
T Consensus 398 vE~YDp~~~~W~~va~m-------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--- 467 (571)
T KOG4441|consen 398 VECYDPVTNKWTPVAPM-------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--- 467 (571)
T ss_pred EEEecCCCCcccccCCC-------CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc---
Confidence 99999999999999988 334455668999999999998765443557899999999999988 6665443
Q ss_pred CcccceEEEECCeEEEEEcCCCcEEEEEeccCCC-CcceEEEEEecC-CCceeEEEEEE-eCCCEEEEEeCCC-----eE
Q 044435 254 GGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPLAFS-SRGDKVLFQKNSK-----DH 325 (378)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~~~~-~~g~~v~~~~~~~-----~~ 325 (378)
.. .+++.+|+||++++.++.-.+=..+-|+. .+.|+.+..+.. +. ..++. .++.+.++.+.++ .+
T Consensus 468 --~~-g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs----~~g~~~~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 468 --GF-GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS----AVGVVVLGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred --cc-eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc----cccEEEECCEEEEEecccCcccccee
Confidence 23 67889999999999776111111222222 468999866665 33 12222 2444344443332 38
Q ss_pred EEEECCCCeEEEEe
Q 044435 326 CWYHLDMHRVESFL 339 (378)
Q Consensus 326 ~~ydl~~~~~~~v~ 339 (378)
-.||+++++|+.+.
T Consensus 541 e~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 541 ECYDPETDTWTEVT 554 (571)
T ss_pred EEcCCCCCceeeCC
Confidence 99999999999884
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.43 E-value=4.6e-12 Score=124.19 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=137.7
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..+..+||.+++|..+.+++.++.. .+.+. ..+...|++.... +......+++|++.++.|..+++|
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~-----~~~~~--~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M----- 367 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCR-----VGVAV--LNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPM----- 367 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccc-----ccEEE--ECCEEEEEccccC-CCcccceEEEecCCCCceeccCCc-----
Confidence 3466889999999999999965431 12221 2233334443321 345567899999999999999888
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE 275 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~ 275 (378)
...+.....+.++|.||.+++.++ ......+..||+.+++|+.+ +++... ... ..++.+|+||++++..+
T Consensus 368 --~~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r-----~~~-gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 368 --NTKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRR-----SGH-GVAVLGGKLYIIGGGDG 438 (571)
T ss_pred --cCccccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCcce-----eee-EEEEECCEEEEEcCcCC
Confidence 445556668999999999999873 33446899999999999998 576532 233 67888999999999765
Q ss_pred -cEEEEEeccCCC-CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEEEe
Q 044435 276 -PWDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVESFL 339 (378)
Q Consensus 276 -~l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~v~ 339 (378)
.-.+=..+.|+. .+.|+.+..|.. +. ...+++. +|.++++++.++ .+-.||+++++|+.+.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccc--cceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 323333444443 578999998887 55 2224443 555444443332 3889999999999994
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.38 E-value=4.1e-11 Score=117.89 Aligned_cols=195 Identities=10% Similarity=0.070 Sum_probs=126.3
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS 197 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~ 197 (378)
....+||.+++|..++++|.+... ++.....+.-.|++... ........++.|++.++.|..+++| |.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-------~~~a~l~~~IYviGG~~-~~~~~~~~v~~Yd~~~n~W~~~~~m---~~- 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-------YASAIVDNEIIIAGGYN-FNNPSLNKVYKINIENKIHVELPPM---IK- 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-------eEEEEECCEEEEEcCCC-CCCCccceEEEEECCCCeEeeCCCC---cc-
Confidence 467789999999999988865321 11111223333443321 1122346799999999999999888 54
Q ss_pred ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCc
Q 044435 198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP 276 (378)
Q Consensus 198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~ 276 (378)
.+.....+.++|+||.+++..+. .....+.+||+.+++|+.+ ++|..... . ..+..+|+||++++....
T Consensus 341 ---~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~-----~-~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 341 ---NRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSS-----Y-GMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred ---hhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccccc-----c-cEEEECCEEEEEeCCCcc
Confidence 33345678999999999987532 2235799999999999998 66654432 2 567789999999875421
Q ss_pred ---------------------EEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC------CeEEEE
Q 044435 277 ---------------------WDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS------KDHCWY 328 (378)
Q Consensus 277 ---------------------l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~------~~~~~y 328 (378)
-.+...+. ..+.|+.+..++. +. ...+++. +|.+.++++.+ ..+..|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~--~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTI--RPGVVSH-KDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred cccccccccccccccccccccceEEEECC--CCCeEeecCCCCcccc--cCcEEEE-CCEEEEEeCCCCCCccceeEEEe
Confidence 12333333 1467998877765 33 1122222 56644444322 136799
Q ss_pred ECCC-CeEEEEe
Q 044435 329 HLDM-HRVESFL 339 (378)
Q Consensus 329 dl~~-~~~~~v~ 339 (378)
|+++ ++|+.+.
T Consensus 486 dp~~~~~W~~~~ 497 (557)
T PHA02713 486 NTNTYNGWELIT 497 (557)
T ss_pred cCCCCCCeeEcc
Confidence 9999 8999884
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.36 E-value=8.5e-11 Score=116.06 Aligned_cols=195 Identities=11% Similarity=0.094 Sum_probs=128.1
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS 197 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~ 197 (378)
.++.+||.|++|..+|+++.++.. .. ... ..+...|++... .......+++|+..+++|+..+.+ |.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~--~~--~~~---~~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~l---p~- 378 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKN--PG--VTV---FNNRIYVIGGIY--NSISLNTVESWKPGESKWREEPPL---IF- 378 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccccc--ce--EEE---ECCEEEEEeCCC--CCEecceEEEEcCCCCceeeCCCc---Cc-
Confidence 678999999999999988855421 11 111 123344444432 223345799999999999998877 54
Q ss_pred ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC-
Q 044435 198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE- 275 (378)
Q Consensus 198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~- 275 (378)
. ......+.++|++|.+++..........+..||+.+++|+.+ ++|.... .. ..+..+|+|+++++...
T Consensus 379 -~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 379 -P--RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-----GG-CAIYHDGKIYVIGGISYI 449 (534)
T ss_pred -C--CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-----Cc-eEEEECCEEEEECCccCC
Confidence 2 334556889999999998543222235799999999999988 5664332 22 45677999999987542
Q ss_pred -----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435 276 -----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 276 -----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~ 339 (378)
.-.+|..+.. .++|+.+..++. +. ...+++. +|.++++++.. ..+..||+++++|+.+.
T Consensus 450 ~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 450 DNIKVYNIVESYNPV--TNKWTELSSLNFPRI--NASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCCcccceEEEecCC--CCceeeCCCCCcccc--cceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 1236666653 367998765554 32 1122222 56644444322 25999999999999884
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.29 E-value=2.2e-10 Score=111.00 Aligned_cols=183 Identities=10% Similarity=0.013 Sum_probs=120.3
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS 197 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~ 197 (378)
....+||.+++|..+|+++.++.. .. +.. ..+...+++... ....++.|+..++.|..++++ |.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~--~~--~v~---~~~~iYviGG~~-----~~~sve~ydp~~n~W~~~~~l---~~- 351 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY--AS--GVP---ANNKLYVVGGLP-----NPTSVERWFHGDAAWVNMPSL---LK- 351 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc--ce--EEE---ECCEEEEECCcC-----CCCceEEEECCCCeEEECCCC---CC-
Confidence 466789999999999998865421 11 111 234444555432 124589999999999999888 54
Q ss_pred ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCc
Q 044435 198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP 276 (378)
Q Consensus 198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~ 276 (378)
.......+.++|+||.+++..... ..+.+||+.+++|+.+ ++|.... .. ..++.+|+|+++++.
T Consensus 352 ---~r~~~~~~~~~g~IYviGG~~~~~---~~ve~ydp~~~~W~~~~~m~~~r~-----~~-~~~~~~~~IYv~GG~--- 416 (480)
T PHA02790 352 ---PRCNPAVASINNVIYVIGGHSETD---TTTEYLLPNHDQWQFGPSTYYPHY-----KS-CALVFGRRLFLVGRN--- 416 (480)
T ss_pred ---CCcccEEEEECCEEEEecCcCCCC---ccEEEEeCCCCEEEeCCCCCCccc-----cc-eEEEECCEEEEECCc---
Confidence 233456789999999999864321 4689999999999998 5543322 22 567789999999852
Q ss_pred EEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEE
Q 044435 277 WDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESF 338 (378)
Q Consensus 277 l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v 338 (378)
.++. +. ..+.|+.+..++. +. ...+++. +|.+.++++.+ ..+..||+++++|+-.
T Consensus 417 ~e~y--dp--~~~~W~~~~~m~~~r~--~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 AEFY--CE--SSNTWTLIDDPIYPRD--NPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred eEEe--cC--CCCcEeEcCCCCCCcc--ccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 2222 21 2367998877665 33 1122232 56644444321 2488999999999854
No 11
>PLN02153 epithiospecifier protein
Probab=99.28 E-value=1.9e-09 Score=100.22 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=122.4
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..++++||.+++|..++++...+.. ...++......+...|++.. ........+++|++.++.|+.++.+ +.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~---~~~~~~~~~~~~~iyv~GG~--~~~~~~~~v~~yd~~t~~W~~~~~~---~~ 121 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRI---SCLGVRMVAVGTKLYIFGGR--DEKREFSDFYSYDTVKNEWTFLTKL---DE 121 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCC---ccCceEEEEECCEEEEECCC--CCCCccCcEEEEECCCCEEEEeccC---CC
Confidence 3588999999999999876432211 01112111223334444432 2222345799999999999988654 11
Q ss_pred cc-cccccCCcceeeCCeEEEEeecCCCc-----ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEE
Q 044435 197 SW-ADHSYGGNGAFVNGALHWLANQNQDE-----MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLL 270 (378)
Q Consensus 197 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~ 270 (378)
.. ...+.....+..+++||.+++..... .....+.+||+.+++|..++.+..... .+... .++..+|+|+++
T Consensus 122 ~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~-~r~~~-~~~~~~~~iyv~ 199 (341)
T PLN02153 122 EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE-KRGGA-GFAVVQGKIWVV 199 (341)
T ss_pred CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC-CCCcc-eEEEECCeEEEE
Confidence 00 11223445688999999999864321 012468999999999998743321111 11222 457789999998
Q ss_pred EcCC---------C--cEEEEEeccCCCCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeCC--------------C
Q 044435 271 CKYS---------E--PWDLWVMKEYGVKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKNS--------------K 323 (378)
Q Consensus 271 ~~~~---------~--~l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~~--------------~ 323 (378)
.... . .-.++.++.. ..+|+++..... ...+ .....+. ++.++++.... .
T Consensus 200 GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n 276 (341)
T PLN02153 200 YGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSN 276 (341)
T ss_pred eccccccccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccc
Confidence 7532 1 1246666642 367998865432 1111 1222222 44544444321 1
Q ss_pred eEEEEECCCCeEEEEeE
Q 044435 324 DHCWYHLDMHRVESFLV 340 (378)
Q Consensus 324 ~~~~ydl~~~~~~~v~~ 340 (378)
.++.||+++++|+.+..
T Consensus 277 ~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 277 EGYALDTETLVWEKLGE 293 (341)
T ss_pred cEEEEEcCccEEEeccC
Confidence 58999999999999953
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.22 E-value=1.9e-09 Score=100.48 Aligned_cols=216 Identities=15% Similarity=0.109 Sum_probs=126.3
Q ss_pred cceEEEee--cCCcEEEEc--CcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEE
Q 044435 107 NGLLALKN--YPKGIILLN--PLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVY 178 (378)
Q Consensus 107 ~GLl~l~~--~~~~~~V~N--P~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vy 178 (378)
++-|.+.. ....+.++| +.+++|..+|++|...+. .. ++. ...+...|++...... ......++.|
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~-~~---~~~--~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN-QA---VAA--AIDGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc-cc---eEE--EECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 44444432 234577777 477899999988732211 11 111 1234455555432111 0123579999
Q ss_pred EcCCCcEEecCcccCCCccccccccCCcce-eeCCeEEEEeecCCCc---------------------------------
Q 044435 179 GLKVNLWRRIKNIKNFPYSWADHSYGGNGA-FVNGALHWLANQNQDE--------------------------------- 224 (378)
Q Consensus 179 ss~~~~W~~~~~~~~~p~~~~~~~~~~~~v-~~~G~lyw~~~~~~~~--------------------------------- 224 (378)
++.+++|+.++.+ .|. . ......+ .++|+||.+++.....
T Consensus 91 d~~~~~W~~~~~~--~p~--~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T TIGR03547 91 DPKKNSWQKLDTR--SPV--G--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY 164 (346)
T ss_pred ECCCCEEecCCCC--CCC--c--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence 9999999998632 033 1 2222233 6899999999864210
Q ss_pred ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEecC
Q 044435 225 MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTMNE 299 (378)
Q Consensus 225 ~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i~~ 299 (378)
.....+.+||+.+++|+.+ ++|.... ... .++..+|+|+++.+... ..++|..+-......|+.+..++.
T Consensus 165 ~~~~~v~~YDp~t~~W~~~~~~p~~~r----~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 165 FWNKNVLSYDPSTNQWRNLGENPFLGT----AGS-AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred CccceEEEEECCCCceeECccCCCCcC----CCc-eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 0014799999999999998 6663221 122 56778999999987542 345666553222357998887765
Q ss_pred -CC--ce--eEEEEEEeCCCEEEEEeCC----------------------CeEEEEECCCCeEEEEe
Q 044435 300 -NG--YR--VIPLAFSSRGDKVLFQKNS----------------------KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 300 -~~--~~--~~~~~~~~~g~~v~~~~~~----------------------~~~~~ydl~~~~~~~v~ 339 (378)
+. .. ....++.-+|.++++.... ..+-+||+++++|+.+.
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 32 10 1111223356644444321 13679999999999884
No 13
>PLN02193 nitrile-specifier protein
Probab=99.20 E-value=4.4e-09 Score=101.75 Aligned_cols=208 Identities=10% Similarity=0.063 Sum_probs=125.0
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS 197 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~ 197 (378)
.+.++||.+++|..+|+....+...........+ .+...|++... .......+++|++.+++|+.+..+ +..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~---~~~lYvfGG~~--~~~~~ndv~~yD~~t~~W~~l~~~---~~~ 265 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI---GSTLYVFGGRD--ASRQYNGFYSFDTTTNEWKLLTPV---EEG 265 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE---CCEEEEECCCC--CCCCCccEEEEECCCCEEEEcCcC---CCC
Confidence 4889999999999887543211100111111112 22333433322 222345799999999999998765 210
Q ss_pred ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC--
Q 044435 198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-- 275 (378)
Q Consensus 198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-- 275 (378)
...+.....+.++++||.+++.... .....+.+||+.+++|+.++.|...... +... .++..+|+++++....+
T Consensus 266 -P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~-R~~~-~~~~~~gkiyviGG~~g~~ 341 (470)
T PLN02193 266 -PTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSI-RGGA-GLEVVQGKVWVVYGFNGCE 341 (470)
T ss_pred -CCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCC-CCCc-EEEEECCcEEEEECCCCCc
Confidence 1123344567889999999986432 1234689999999999988654322111 2233 56778999999987654
Q ss_pred cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC--------------CeEEEEECCCCeEEEEe
Q 044435 276 PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS--------------KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 276 ~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~--------------~~~~~ydl~~~~~~~v~ 339 (378)
.-++|+++.. ..+|+++..+.. +..+....++.-++.++++.... ..++.||+.+++|+.+.
T Consensus 342 ~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 342 VDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred cCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 3567888763 357999876532 11111111222245544444321 13899999999999995
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.16 E-value=9.3e-09 Score=94.88 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=120.5
Q ss_pred EEEE-cCccc-ceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE----EecCccc
Q 044435 119 IILL-NPLTK-KHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW----RRIKNIK 192 (378)
Q Consensus 119 ~~V~-NP~t~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W----~~~~~~~ 192 (378)
++++ +|..+ +|..++++|.++.. ..+..+ .+...|++.. ........++.|+..++.| +.++.+
T Consensus 41 v~~~~~~~~~~~W~~~~~lp~~r~~----~~~~~~---~~~lyviGG~--~~~~~~~~v~~~d~~~~~w~~~~~~~~~l- 110 (323)
T TIGR03548 41 IYIAKDENSNLKWVKDGQLPYEAAY----GASVSV---ENGIYYIGGS--NSSERFSSVYRITLDESKEELICETIGNL- 110 (323)
T ss_pred eEEEecCCCceeEEEcccCCccccc----eEEEEE---CCEEEEEcCC--CCCCCceeEEEEEEcCCceeeeeeEcCCC-
Confidence 5555 45433 79999888765421 112222 2333344432 2223346789999999887 566666
Q ss_pred CCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEE
Q 044435 193 NFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLC 271 (378)
Q Consensus 193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 271 (378)
|. . .....++.++|+||.+++.... .....+.+||+.+++|+.+ ++|.... ... .++..+|+|+++.
T Consensus 111 --p~--~--~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~-~~~~~~~~iYv~G 178 (323)
T TIGR03548 111 --PF--T--FENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPR----VQP-VCVKLQNELYVFG 178 (323)
T ss_pred --Cc--C--ccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCC----Ccc-eEEEECCEEEEEc
Confidence 54 2 2345578899999999985321 1235799999999999998 5664322 122 4567899999999
Q ss_pred cCCC--cEEEEEeccCCCCcceEEEEEecC-CCce---eEEEEEEeCCCEEEEEeCC-----------------------
Q 044435 272 KYSE--PWDLWVMKEYGVKDSWSKLFTMNE-NGYR---VIPLAFSSRGDKVLFQKNS----------------------- 322 (378)
Q Consensus 272 ~~~~--~l~iW~l~~~~~~~~W~~~~~i~~-~~~~---~~~~~~~~~g~~v~~~~~~----------------------- 322 (378)
+... ..++|..+.. ..+|+.+..+.. .... .....+..++.++++...+
T Consensus 179 G~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (323)
T TIGR03548 179 GGSNIAYTDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYK 256 (323)
T ss_pred CCCCccccceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhH
Confidence 8654 3456666642 357998765532 2111 1111222245544443322
Q ss_pred --------------CeEEEEECCCCeEEEEe
Q 044435 323 --------------KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 323 --------------~~~~~ydl~~~~~~~v~ 339 (378)
.++..||+++++|+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 257 KEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999985
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.10 E-value=1.1e-08 Score=96.40 Aligned_cols=218 Identities=16% Similarity=0.069 Sum_probs=126.0
Q ss_pred eccceEEEee--cCCcEEEEcCc--ccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEE
Q 044435 105 SCNGLLALKN--YPKGIILLNPL--TKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEAT 176 (378)
Q Consensus 105 s~~GLl~l~~--~~~~~~V~NP~--t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~ 176 (378)
..++-|.+.. ....+.++|+. +++|..+|++|..... ... ... ..+...|++...... ......++
T Consensus 36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~-~~~--~v~---~~~~IYV~GG~~~~~~~~~~~~~~~v~ 109 (376)
T PRK14131 36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE-QAV--AAF---IDGKLYVFGGIGKTNSEGSPQVFDDVY 109 (376)
T ss_pred EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc-cce--EEE---ECCEEEEEcCCCCCCCCCceeEcccEE
Confidence 3455554432 23456777765 5889999987642211 111 111 224455555432100 11235799
Q ss_pred EEEcCCCcEEecCcccCCCccccccccCCccee-eCCeEEEEeecCCCc-------------------------------
Q 044435 177 VYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF-VNGALHWLANQNQDE------------------------------- 224 (378)
Q Consensus 177 vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~-~~G~lyw~~~~~~~~------------------------------- 224 (378)
+|+..++.|+.++.+ .|. . ......+. .+|+||.+++.....
T Consensus 110 ~YD~~~n~W~~~~~~--~p~--~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 110 KYDPKTNSWQKLDTR--SPV--G--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred EEeCCCCEEEeCCCC--CCC--c--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 999999999998742 133 1 12233344 799999999864210
Q ss_pred --ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEe
Q 044435 225 --MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTM 297 (378)
Q Consensus 225 --~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i 297 (378)
.....+.+||+.+++|+.+ ++|.... ... .++..+++|+++.+... ..++|..+-......|+++..+
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~----~~~-a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGT----AGS-AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCC----Ccc-eEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 0124699999999999988 5664222 122 56777999999997531 5566765432234679998877
Q ss_pred cC-CC-c----eeEEEEEEeCCCEEEEEeCC-------------------C---eEEEEECCCCeEEEEe
Q 044435 298 NE-NG-Y----RVIPLAFSSRGDKVLFQKNS-------------------K---DHCWYHLDMHRVESFL 339 (378)
Q Consensus 298 ~~-~~-~----~~~~~~~~~~g~~v~~~~~~-------------------~---~~~~ydl~~~~~~~v~ 339 (378)
+. +. . .....++.-++.++++.... . .+-.||+++++|+.+.
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 65 32 1 01111233356644443321 0 1457999999999884
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.05 E-value=7.7e-09 Score=102.20 Aligned_cols=212 Identities=9% Similarity=0.007 Sum_probs=129.4
Q ss_pred EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccc
Q 044435 119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSW 198 (378)
Q Consensus 119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~ 198 (378)
+.-+|+.+++|..+++.+... .++.....+...|++... ........++.|++.++.|..++.+ |.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~---~~-- 331 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYVY--------CFGSVVLNNVIYFIGGMN-KNNLSVNSVVSYDTKTKSWNKVPEL---IY-- 331 (534)
T ss_pred eeecchhhhhcccccCccccc--------cceEEEECCEEEEECCCc-CCCCeeccEEEEeCCCCeeeECCCC---Cc--
Confidence 455788899999887665321 111111223333333322 1122334789999999999998877 43
Q ss_pred cccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC--
Q 044435 199 ADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-- 275 (378)
Q Consensus 199 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-- 275 (378)
.......+.++|.+|.+++.... .....+.+||+.+.+|+.+ ++|.... .. ..+..+|+|+++++...
T Consensus 332 --~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~-----~~-~~~~~~~~iYv~GG~~~~~ 402 (534)
T PHA03098 332 --PRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRY-----NP-CVVNVNNLIYVIGGISKND 402 (534)
T ss_pred --ccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCc-----cc-eEEEECCEEEEECCcCCCC
Confidence 23345678899999999987532 2235799999999999988 6664332 22 56778999999988432
Q ss_pred --cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC--------CeEEEEECCCCeEEEEeEeC--
Q 044435 276 --PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS--------KDHCWYHLDMHRVESFLVKG-- 342 (378)
Q Consensus 276 --~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~--------~~~~~ydl~~~~~~~v~~~~-- 342 (378)
.-.++..+.. ..+|.....++. +. .....+ -++.++++++.. ..+..||+++++|+.+.-..
T Consensus 403 ~~~~~v~~yd~~--t~~W~~~~~~p~~r~--~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 403 ELLKTVECFSLN--TNKWSKGSPLPISHY--GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred cccceEEEEeCC--CCeeeecCCCCcccc--CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence 2355666542 357998776655 33 122222 245533333211 13899999999999985322
Q ss_pred C-c-ceEEeeeccccCCC
Q 044435 343 P-S-DVHVCVDTLVSPFA 358 (378)
Q Consensus 343 ~-~-~~~~y~~slv~~~~ 358 (378)
. . ....+-..|.-+.+
T Consensus 478 r~~~~~~~~~~~iyv~GG 495 (534)
T PHA03098 478 RINASLCIFNNKIYVVGG 495 (534)
T ss_pred cccceEEEECCEEEEEcC
Confidence 1 1 44444444444443
No 17
>PLN02193 nitrile-specifier protein
Probab=99.02 E-value=4.8e-08 Score=94.60 Aligned_cols=206 Identities=11% Similarity=0.030 Sum_probs=118.4
Q ss_pred cEEEEcCcc----cceeecCCC---CCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCc
Q 044435 118 GIILLNPLT----KKHRVLPKF---YRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKN 190 (378)
Q Consensus 118 ~~~V~NP~t----~~~~~LP~~---~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 190 (378)
..++++|.+ .+|..+++. |.++.. . +... ..+...|++............+++|+..+++|+.++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~--h---~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~ 210 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCS--H---GIAQ--VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA 210 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccc--c---EEEE--ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC
Confidence 467788876 799998764 322211 1 1111 1223333332211111122469999999999998754
Q ss_pred ccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEE
Q 044435 191 IKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSL 269 (378)
Q Consensus 191 ~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~ 269 (378)
+...|. ..+.....+.++++||.+++.... .....+.+||+.+++|+.+ +++... ..+... .++..+++|++
T Consensus 211 ~g~~P~---~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P--~~R~~h-~~~~~~~~iYv 283 (470)
T PLN02193 211 TGDVPH---LSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGP--TPRSFH-SMAADEENVYV 283 (470)
T ss_pred CCCCCC---CcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCC--CCccce-EEEEECCEEEE
Confidence 311122 112234468899999999986532 1235799999999999988 442111 011223 55667999999
Q ss_pred EEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEeE
Q 044435 270 LCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFLV 340 (378)
Q Consensus 270 ~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~~ 340 (378)
+..... .-.+|.++.. ..+|+.+..... ...+ ...+.+. ++.++++...+ ..++.||+++++|+++..
T Consensus 284 ~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 284 FGGVSATARLKTLDSYNIV--DKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred ECCCCCCCCcceEEEEECC--CCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEecc
Confidence 988653 2355666542 357987653221 1111 2223333 56644444322 349999999999999954
No 18
>PLN02153 epithiospecifier protein
Probab=98.97 E-value=8e-08 Score=89.37 Aligned_cols=202 Identities=9% Similarity=0.015 Sum_probs=114.1
Q ss_pred CcccceeecCC----CCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcccc
Q 044435 124 PLTKKHRVLPK----FYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWA 199 (378)
Q Consensus 124 P~t~~~~~LP~----~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~ 199 (378)
|...+|..|++ .|.++.. . +... ..+...|++............+++|+..++.|+..+.+...|.
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~--h---~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~--- 73 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCS--H---GIAV--VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPR--- 73 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCc--c---eEEE--ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCC---
Confidence 47788999976 3333221 1 1111 1233334333221111123479999999999998865511121
Q ss_pred ccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC---
Q 044435 200 DHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE--- 275 (378)
Q Consensus 200 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~--- 275 (378)
........+.++++||.+++..... ....+.+||+.+++|+.+ +++.......+... ..+..+++|+++.+...
T Consensus 74 ~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~-~~~~~~~~iyv~GG~~~~~~ 151 (341)
T PLN02153 74 ISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH-SMASDENHVYVFGGVSKGGL 151 (341)
T ss_pred CccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceee-EEEEECCEEEEECCccCCCc
Confidence 1112344688999999999864322 224699999999999987 34211100111222 55778999999988542
Q ss_pred -----c-EEEEEeccCCCCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeC-------------CCeEEEEECCCCe
Q 044435 276 -----P-WDLWVMKEYGVKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKN-------------SKDHCWYHLDMHR 334 (378)
Q Consensus 276 -----~-l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~-------------~~~~~~ydl~~~~ 334 (378)
. -.+|.++.. ..+|..+..+.. ...+ ...+++. +|+++++... ...+..||+++++
T Consensus 152 ~~~~~~~~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 152 MKTPERFRTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred cCCCcccceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 1 246666642 357997654431 1101 1122222 5554444321 1349999999999
Q ss_pred EEEEeE
Q 044435 335 VESFLV 340 (378)
Q Consensus 335 ~~~v~~ 340 (378)
|+++..
T Consensus 229 W~~~~~ 234 (341)
T PLN02153 229 WTEVET 234 (341)
T ss_pred EEeccc
Confidence 999964
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=98.97 E-value=3.1e-08 Score=96.19 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=108.1
Q ss_pred cceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCC
Q 044435 171 YHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFG 249 (378)
Q Consensus 171 ~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~ 249 (378)
....++.|++.++.|..++++ |. .......+.++|.+|.+++.... ..+..||+.+++|+.+ ++|...
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~~m---~~----~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r 353 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIPPM---NS----PRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPR 353 (480)
T ss_pred cCCeEEEEECCCCEEEECCCC---Cc----hhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCC
Confidence 345789999999999999988 43 22334578899999999986432 3689999999999988 666433
Q ss_pred CCCCCcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeE
Q 044435 250 NEGGGGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDH 325 (378)
Q Consensus 250 ~~~~~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~ 325 (378)
. .. ..++.+|+||++++... .++.+ +. ..+.|+.+..++. +. ...++ .-+|. |++.++ .+
T Consensus 354 ~-----~~-~~~~~~g~IYviGG~~~~~~~ve~y--dp--~~~~W~~~~~m~~~r~--~~~~~-~~~~~-IYv~GG--~~ 417 (480)
T PHA02790 354 C-----NP-AVASINNVIYVIGGHSETDTTTEYL--LP--NHDQWQFGPSTYYPHY--KSCAL-VFGRR-LFLVGR--NA 417 (480)
T ss_pred c-----cc-EEEEECCEEEEecCcCCCCccEEEE--eC--CCCEEEeCCCCCCccc--cceEE-EECCE-EEEECC--ce
Confidence 2 22 66888999999998654 34443 22 1357998766665 33 11222 22555 555543 37
Q ss_pred EEEECCCCeEEEEe-EeC-C-c-ceEEeeeccccCCCC
Q 044435 326 CWYHLDMHRVESFL-VKG-P-S-DVHVCVDTLVSPFAE 359 (378)
Q Consensus 326 ~~ydl~~~~~~~v~-~~~-~-~-~~~~y~~slv~~~~~ 359 (378)
..||+++++|+.+. ... . . ...++-..|--+.+.
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc
Confidence 78999999999984 222 2 1 444555555444443
No 20
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=1.8e-09 Score=68.92 Aligned_cols=41 Identities=20% Similarity=0.481 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN 44 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 44 (378)
..||+|++.+||..||++++.++++|||+|+.++.++.+-+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 46999999999999999999999999999999998875544
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.66 E-value=6.9e-09 Score=66.66 Aligned_cols=44 Identities=36% Similarity=0.519 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHH
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHL 47 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~ 47 (378)
..||+|++.+||.+|+++++.++++|||+|++++.++.+...+.
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 36999999999999999999999999999999999998866543
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.65 E-value=5.2e-06 Score=78.25 Aligned_cols=155 Identities=13% Similarity=0.140 Sum_probs=92.7
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccc--eEEEEEEcCCceeeee-cCCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMIN--DLILAFDLNIETFYSM-PMPGFG 249 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~i~~fD~~~~~~~~i-~lP~~~ 249 (378)
..+++|+..++.|+.++.+ |. . .......+.++++||.+++........ .....||+++.+|..+ ++|...
T Consensus 189 ~~v~~YD~~t~~W~~~~~~---p~--~-~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGES---PF--L-GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP 262 (376)
T ss_pred ceEEEEECCCCeeeECCcC---CC--C-CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCC
Confidence 4699999999999998877 53 1 122344677899999999854322111 2345677889999988 666532
Q ss_pred CCC-CC--cccceEEEECCeEEEEEcCCC----------c-------EEEEEeccCCC-CcceEEEEEecC-CCceeEEE
Q 044435 250 NEG-GG--GELSGVYVLKGCLSLLCKYSE----------P-------WDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPL 307 (378)
Q Consensus 250 ~~~-~~--~~~~~l~~~~G~L~~~~~~~~----------~-------l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~ 307 (378)
... .. ... ..+..+|+|+++.+... . -.+|..+-|+. .+.|+....++. +. . ..
T Consensus 263 ~~~~~~~~~~~-~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~-~~ 338 (376)
T PRK14131 263 GGSSQEGVAGA-FAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--Y-GV 338 (376)
T ss_pred cCCcCCccceE-eceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--c-eE
Confidence 111 00 111 24567999999987531 0 11343332221 357998776665 33 1 22
Q ss_pred EEEeCCCEEEEEeCC------CeEEEEECCCCeEEE
Q 044435 308 AFSSRGDKVLFQKNS------KDHCWYHLDMHRVES 337 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~------~~~~~ydl~~~~~~~ 337 (378)
++.-++.++++.... ..+..|+++++++..
T Consensus 339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 333356655555421 148889888877764
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.61 E-value=7.5e-06 Score=76.34 Aligned_cols=134 Identities=12% Similarity=0.168 Sum_probs=80.3
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEE--EcCCceeeee-cCCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAF--DLNIETFYSM-PMPGFG 249 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~f--D~~~~~~~~i-~lP~~~ 249 (378)
..+++|++.+++|+.++.+ |. . .......+.++|+||.+++..........+..| |+++++|+.+ ++|...
T Consensus 168 ~~v~~YDp~t~~W~~~~~~---p~--~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r 241 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGEN---PF--L-GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK 241 (346)
T ss_pred ceEEEEECCCCceeECccC---CC--C-cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC
Confidence 5799999999999999887 53 1 123344678899999999864322111234445 4567799888 666432
Q ss_pred CCCC--CcccceEEEECCeEEEEEcCCC----------------------cEEEEEeccCCCCcceEEEEEecC-CCcee
Q 044435 250 NEGG--GGELSGVYVLKGCLSLLCKYSE----------------------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRV 304 (378)
Q Consensus 250 ~~~~--~~~~~~l~~~~G~L~~~~~~~~----------------------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~ 304 (378)
.... .... ..+..+|+|+++..... ..++|..+ .+.|+.+..++. +. .
T Consensus 242 ~~~~~~~~~~-~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~~~--~ 314 (346)
T TIGR03547 242 SSSQEGLAGA-FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQGLA--Y 314 (346)
T ss_pred CCccccccEE-eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCCCce--e
Confidence 1100 0111 35678999999987531 23444443 257998877765 32 1
Q ss_pred EEEEEEeCCCEEEEEe
Q 044435 305 IPLAFSSRGDKVLFQK 320 (378)
Q Consensus 305 ~~~~~~~~g~~v~~~~ 320 (378)
..++.-++.++++..
T Consensus 315 -~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 -GVSVSWNNGVLLIGG 329 (346)
T ss_pred -eEEEEcCCEEEEEec
Confidence 223333566455543
No 24
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.61 E-value=1.1e-06 Score=74.91 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=133.7
Q ss_pred EEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCC--CC-------CCCceeEEeeecCCCCeEEEEEEEecCCCc
Q 044435 101 IIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDL--HG-------DKPSLHGFGYDVGSDDYKLVRIHVFKSPVY 171 (378)
Q Consensus 101 ~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~--~~-------~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 171 (378)
+.-+-|.|-.-=...+-.+.|+|..+-+|.++||-.... .. ..+......|+. . ..+.....++...
T Consensus 28 SFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d---~-~yvWGGRND~ega 103 (392)
T KOG4693|consen 28 SFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD---K-AYVWGGRNDDEGA 103 (392)
T ss_pred ecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc---e-EEEEcCccCcccc
Confidence 444556665544445566889999999999999833211 00 011111222221 1 1222223244566
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc-ccceEEEEEEcCCceeeee---cCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE-MINDLILAFDLNIETFYSM---PMPG 247 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~~i~~fD~~~~~~~~i---~lP~ 247 (378)
+...+.|+.+++.|.+....-.+|. .+..+++.+++..+|..++..+.- --..-+.+||+.+.+|+.+ ..|+
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPg----aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPG----ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred cceeeeeccccccccccceeeecCC----ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence 7789999999999998754322233 234556788888999998754321 1113689999999999998 4466
Q ss_pred CCCCCCCcccceEEEECCeEEEEEcCCC------------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC
Q 044435 248 FGNEGGGGELSGVYVLKGCLSLLCKYSE------------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD 314 (378)
Q Consensus 248 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~------------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~ 314 (378)
...+ +. .-.+.+|.+++..+..+ .-.|-.++-. .+.|.....-.. +.-+..--.+.-||+
T Consensus 180 rwRD---FH--~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvYng~ 252 (392)
T KOG4693|consen 180 RWRD---FH--TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVYNGK 252 (392)
T ss_pred hhhh---hh--hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEEcce
Confidence 5543 22 33556899999887532 1233333321 246876533322 211111122233788
Q ss_pred EEEEEeCC-------CeEEEEECCCCeEEEEeEeC
Q 044435 315 KVLFQKNS-------KDHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 315 ~v~~~~~~-------~~~~~ydl~~~~~~~v~~~~ 342 (378)
+.+|.... ..++.||++|..|.+|+.+|
T Consensus 253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred EEEecccchhhhhhhcceeecccccchheeeeccC
Confidence 66666432 24999999999999998876
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.61 E-value=7.2e-09 Score=64.10 Aligned_cols=39 Identities=51% Similarity=0.820 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435 6 LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN 44 (378)
Q Consensus 6 LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 44 (378)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 26
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.58 E-value=5e-06 Score=76.75 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=94.6
Q ss_pred EEEEEEcCC--CcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee----eee-cCC
Q 044435 174 EATVYGLKV--NLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF----YSM-PMP 246 (378)
Q Consensus 174 ~~~vyss~~--~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~----~~i-~lP 246 (378)
.+.+|+... ..|..+..+ |. .. ....++.+++.||.+++..... ....+..||+.+++| ..+ ++|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~l---p~--~r--~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp 111 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQL---PY--EA--AYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLP 111 (323)
T ss_pred eeEEEecCCCceeEEEcccC---Cc--cc--cceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCC
Confidence 455555222 379998877 54 22 2345688899999999864321 235799999999988 444 555
Q ss_pred CCCCCCCCcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC
Q 044435 247 GFGNEGGGGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS 322 (378)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~ 322 (378)
.... .. ..++.+|+|+++..... .-.+|.++.. ..+|+.+..++. .. ....++.-++.++++...+
T Consensus 112 ~~~~-----~~-~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~~r--~~~~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 112 FTFE-----NG-SACYKDGTLYVGGGNRNGKPSNKSYLFNLE--TQEWFELPDFPGEPR--VQPVCVKLQNELYVFGGGS 181 (323)
T ss_pred cCcc-----Cc-eEEEECCEEEEEeCcCCCccCceEEEEcCC--CCCeeECCCCCCCCC--CcceEEEECCEEEEEcCCC
Confidence 4332 22 56778999999988532 3467777753 357998876654 22 1222233356645554332
Q ss_pred ----CeEEEEECCCCeEEEEe
Q 044435 323 ----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 323 ----~~~~~ydl~~~~~~~v~ 339 (378)
..++.||+++++|+.+.
T Consensus 182 ~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 182 NIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CccccceEEEecCCCeeEECC
Confidence 13789999999999985
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.52 E-value=4.1e-06 Score=75.78 Aligned_cols=214 Identities=15% Similarity=0.128 Sum_probs=135.5
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC-----CCcceEEEEEEcCCCcEEecCcc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS-----PVYHIEATVYGLKVNLWRRIKNI 191 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-----~~~~~~~~vyss~~~~W~~~~~~ 191 (378)
..+|++|--+.+|+.+-.+..+.. .+...+...+.. +-.+....... -...-..++|+..++.|+.+...
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~p---Rsshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPP---RSSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCC---CccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence 358999999999998843332221 112223333332 22233233222 12344688999999999998754
Q ss_pred cCCCccccccccCCcceeeCCeEEEEeecCCCc---ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeE
Q 044435 192 KNFPYSWADHSYGGNGAFVNGALHWLANQNQDE---MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCL 267 (378)
Q Consensus 192 ~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L 267 (378)
-. ...+..++.|.....|.-.++..... ...+-|.+||+++=+|+.+..+...- ..+... .+.+. +|.+
T Consensus 173 ---g~--PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P-tpRSGc-q~~vtpqg~i 245 (521)
T KOG1230|consen 173 ---GG--PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP-TPRSGC-QFSVTPQGGI 245 (521)
T ss_pred ---CC--CCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC-CCCCcc-eEEecCCCcE
Confidence 11 33455667888888888777654321 23356999999999999995554321 112233 56666 8998
Q ss_pred EEEEcCC----------C--cEEEEEeccCC---CCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeCC--------
Q 044435 268 SLLCKYS----------E--PWDLWVMKEYG---VKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKNS-------- 322 (378)
Q Consensus 268 ~~~~~~~----------~--~l~iW~l~~~~---~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~~-------- 322 (378)
++-++.. + +-++|.|+... .+..|.++..+.. +..+ ...+++++++..++|..-.
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEs 325 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEES 325 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchh
Confidence 8887652 1 56899998542 2456888877665 3322 3457788888878886411
Q ss_pred ------CeEEEEECCCCeEEEEeEeC
Q 044435 323 ------KDHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 323 ------~~~~~ydl~~~~~~~v~~~~ 342 (378)
..++.||+..++|....+++
T Consensus 326 l~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhhhheecccchhhHhhhcc
Confidence 24999999999999886665
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.17 E-value=5.1e-05 Score=65.05 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=110.3
Q ss_pred cEEEEcCcccceeecCCCCC-CCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 118 GIILLNPLTKKHRVLPKFYR-DLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~-~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
-++-++|.|.+|.+.--... +...+..+++..| +...|++....+-..-...+++++..|..|+.+... ..|.
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk-g~Pp 179 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK-GDPP 179 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChHHHHHhhhccceeEeccceeeeehhcc-CCCc
Confidence 46788999999975321110 0001122333333 345555554322233345688889999999998532 1133
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCc--------ccceEEEEEEcCCceeeee----cCCCCCCCCCCcccceEEEEC
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDE--------MINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSGVYVLK 264 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~--------~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~l~~~~ 264 (378)
..+..+.++.++|.+|..++.+... ..-..|++||+.++.|..- .+|.+.. .. ..-+.+
T Consensus 180 ---rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SH-S~fvYn 250 (392)
T KOG4693|consen 180 ---RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SH-STFVYN 250 (392)
T ss_pred ---hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----cc-ceEEEc
Confidence 2233456788999999999865421 1125799999999999765 2233332 22 567789
Q ss_pred CeEEEEEcCCC-----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEE
Q 044435 265 GCLSLLCKYSE-----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQ 319 (378)
Q Consensus 265 G~L~~~~~~~~-----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~ 319 (378)
|++++..+..+ --++|.++.- ...|+++..-.. +-.+.+-.++..++++++|.
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFG 309 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGKVYLFG 309 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCEEEEec
Confidence 99999998876 2378888863 357998875544 33223333444455544444
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.96 E-value=0.0012 Score=64.18 Aligned_cols=207 Identities=14% Similarity=0.046 Sum_probs=127.3
Q ss_pred cEEEEcCcccceeecCCCCCCCCC-CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHG-DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~-~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
.++|+|-.++.|.........+.. .....+.++ ++-++.............++.|+..++.|+........|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P- 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP- 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC-
Confidence 499999999999776544332211 011111222 333333332222334568999999999999886542212
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCC-C
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS-E 275 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~-~ 275 (378)
.....+..+.++-++|..++........+.+.+||+.+.+|..+......... +... .++..+++++++.+.. .
T Consensus 162 ---~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p-R~gH-~~~~~~~~~~v~gG~~~~ 236 (482)
T KOG0379|consen 162 ---PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP-RYGH-AMVVVGNKLLVFGGGDDG 236 (482)
T ss_pred ---CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC-CCCc-eEEEECCeEEEEeccccC
Confidence 23455667888889999998765443457899999999999998555433322 2333 6777889999988866 3
Q ss_pred ---cEEEEEeccCCCCcceEEEEEecC-CCc-eeEEEEEEeCCCEEEEEeC--------CCeEEEEECCCCeEEEEeE
Q 044435 276 ---PWDLWVMKEYGVKDSWSKLFTMNE-NGY-RVIPLAFSSRGDKVLFQKN--------SKDHCWYHLDMHRVESFLV 340 (378)
Q Consensus 276 ---~l~iW~l~~~~~~~~W~~~~~i~~-~~~-~~~~~~~~~~g~~v~~~~~--------~~~~~~ydl~~~~~~~v~~ 340 (378)
-=++|.++=.. ..|.+...... ... ......+ .|+.+++..+ -.+++.||.+++.|.++..
T Consensus 237 ~~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~--~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 237 DVYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTV--SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred CceecceEeeeccc--ceeeeccccCCCCCCcceeeeEE--ECCEEEEEcCCcccccccccccccccccccceeeeec
Confidence 44889988633 56885543332 111 1333333 2443444322 1248999999999999953
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.83 E-value=0.00085 Score=65.24 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=112.8
Q ss_pred CCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEE
Q 044435 155 SDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFD 234 (378)
Q Consensus 155 ~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD 234 (378)
.+.+.|++............+++|+.++..|.........| ........+.++..||.+++..........+..||
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p----~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d 145 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP----SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLD 145 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC----CcccceeEEEECCeEEEEccccCCCCChhheEecc
Confidence 45566666543222222236899999999998765431122 23445667899999999998764333345799999
Q ss_pred cCCceeeeecC----CCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEecC-CCce-e
Q 044435 235 LNIETFYSMPM----PGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTMNE-NGYR-V 304 (378)
Q Consensus 235 ~~~~~~~~i~l----P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~ 304 (378)
+.+.+|..+.. |+... .. .++..+.+|++.++... .-++|+++-.. ..|.++.+... +..+ .
T Consensus 146 ~~t~~W~~l~~~~~~P~~r~-----~H-s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 146 LSTRTWSLLSPTGDPPPPRA-----GH-SATVVGTKLVVFGGIGGTGDSLNDLHIYDLET--STWSELDTQGEAPSPRYG 217 (482)
T ss_pred CCCCcEEEecCcCCCCCCcc-----cc-eEEEECCEEEEECCccCcccceeeeeeecccc--ccceecccCCCCCCCCCC
Confidence 99999998722 32222 22 56667788998887654 56889998643 45999888776 4322 4
Q ss_pred EEEEEEeCCCEEEEEeCC-C-----eEEEEECCCCeEEEEeEeC
Q 044435 305 IPLAFSSRGDKVLFQKNS-K-----DHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 305 ~~~~~~~~g~~v~~~~~~-~-----~~~~ydl~~~~~~~v~~~~ 342 (378)
..+++.. ..++++...+ . .++.+|+.+.+|+.+...+
T Consensus 218 H~~~~~~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 218 HAMVVVG-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ceEEEEC-CeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence 4455543 3334443332 1 4999999999999775444
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.82 E-value=0.00032 Score=62.29 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=36.4
Q ss_pred CCC----HHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435 5 KLP----LDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN 44 (378)
Q Consensus 5 ~LP----~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 44 (378)
.|| +++.+.||+.|...+|..|..|||+|+++++++-.-+
T Consensus 77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 589 9999999999999999999999999999999875443
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.65 E-value=0.0029 Score=57.82 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=94.6
Q ss_pred EEeeecCCCCeEEEEEEEecC--CCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeC-CeEEEEeecCCCc
Q 044435 148 GFGYDVGSDDYKLVRIHVFKS--PVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVN-GALHWLANQNQDE 224 (378)
Q Consensus 148 ~~g~d~~~~~ykvv~~~~~~~--~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~-G~lyw~~~~~~~~ 224 (378)
.+..+|.-+...+++.-.+.+ ..-....+.|+...++|+.+..+ .. ...+..+..|++- |.+|..++.-...
T Consensus 71 sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---n~--P~pRsshq~va~~s~~l~~fGGEfaSP 145 (521)
T KOG1230|consen 71 SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---NA--PPPRSSHQAVAVPSNILWLFGGEFASP 145 (521)
T ss_pred ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---CC--cCCCccceeEEeccCeEEEeccccCCc
Confidence 455566655544444432232 22234678899999999998654 11 2223344455555 7666666543322
Q ss_pred -----ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC
Q 044435 225 -----MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE 299 (378)
Q Consensus 225 -----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 299 (378)
....-+..||+.+++|..+.++...... ... +++....+|.+.+
T Consensus 146 nq~qF~HYkD~W~fd~~trkweql~~~g~PS~R--SGH-RMvawK~~lilFG---------------------------- 194 (521)
T KOG1230|consen 146 NQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR--SGH-RMVAWKRQLILFG---------------------------- 194 (521)
T ss_pred chhhhhhhhheeeeeeccchheeeccCCCCCCC--ccc-eeEEeeeeEEEEc----------------------------
Confidence 1224589999999999999887644321 111 3333344433333
Q ss_pred CCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeEEEEeEeC--C---c--ceEEe-eeccccCCCCChhh
Q 044435 300 NGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRVESFLVKG--P---S--DVHVC-VDTLVSPFAESNRS 363 (378)
Q Consensus 300 ~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~~~v~~~~--~---~--~~~~y-~~slv~~~~~~~~~ 363 (378)
|+++ +++++++. .|++||++|-+|.++...| + + ++.+| ...++--..+.++.
T Consensus 195 --------GFhd~nr~y~YyN----Dvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 195 --------GFHDSNRDYIYYN----DVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred --------ceecCCCceEEee----eeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 3332 45545544 2777777777777776544 1 1 56666 55666555555544
No 33
>PF13964 Kelch_6: Kelch motif
Probab=97.27 E-value=0.00066 Score=43.58 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=35.4
Q ss_pred CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCC
Q 044435 204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPG 247 (378)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~ 247 (378)
..+.|.++|.||.+++..........+..||+.+++|+.+ ++|.
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 3457999999999998865333446899999999999998 6663
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00012 Score=64.29 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHhcCCccccceeeecchhhhcccCChh
Q 044435 5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKD 41 (378)
Q Consensus 5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~ 41 (378)
.||||+++.||+.||.++|.++..|||+|+++.++..
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 4999999999999999999999999999999987654
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.10 E-value=0.0015 Score=41.24 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=35.5
Q ss_pred CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCC
Q 044435 204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMP 246 (378)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 246 (378)
....+.++|.||.+++..........+.+||+.+++|..+ ++|
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 3457899999999999876445567999999999999988 555
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.49 E-value=0.0078 Score=38.33 Aligned_cols=41 Identities=10% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCcceeeCCeEEEEeec--CCCcccceEEEEEEcCCceeeeec
Q 044435 204 GGNGAFVNGALHWLANQ--NQDEMINDLILAFDLNIETFYSMP 244 (378)
Q Consensus 204 ~~~~v~~~G~lyw~~~~--~~~~~~~~~i~~fD~~~~~~~~i~ 244 (378)
.+..+.++++||.+++. .........+..||+++++|+.++
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 45578999999999988 323344578999999999999883
No 37
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.28 E-value=0.71 Score=40.56 Aligned_cols=204 Identities=12% Similarity=0.058 Sum_probs=110.7
Q ss_pred eeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 103 IGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 103 ~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
....+|-|.+.+ ....++.++|.+++...+..+. ..++.++...+.+.|.. .....+++..
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g~l~v~~---------~~~~~~~d~~ 68 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDGRLYVAD---------SGGIAVVDPD 68 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------EEEEEEECTTSEEEEEE---------TTCEEEEETT
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------CceEEEEccCCEEEEEE---------cCceEEEecC
Confidence 344466776666 5678999999998875543222 22566663334433222 2334666889
Q ss_pred CCcEEecCcccCCCccc-cccccCCcceeeCCeEEEEeecCCCcccc--eEEEEEEcCCceeeee----cCCCCCCCCCC
Q 044435 182 VNLWRRIKNIKNFPYSW-ADHSYGGNGAFVNGALHWLANQNQDEMIN--DLILAFDLNIETFYSM----PMPGFGNEGGG 254 (378)
Q Consensus 182 ~~~W~~~~~~~~~p~~~-~~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~i~~fD~~~~~~~~i----~lP~~~~~~~~ 254 (378)
++.++.+... +.+. .......-.+--+|.+|+........... ..|..+|.. ++...+ ..|.
T Consensus 69 ~g~~~~~~~~---~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN------- 137 (246)
T PF08450_consen 69 TGKVTVLADL---PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN------- 137 (246)
T ss_dssp TTEEEEEEEE---ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-------
T ss_pred CCcEEEEeec---cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc-------
Confidence 9998887654 2200 11111122344578877765433221111 479999999 554443 2221
Q ss_pred cccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEe-cC-CCc-eeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 255 GELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTM-NE-NGY-RVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 255 ~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~-~~~-~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
-|+.. +| .|+++.....+ ||.++-......+.....+ +. ... ...-+++..+|.+.+-.....++..||
T Consensus 138 ----Gi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 138 ----GIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp ----EEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ----ceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 34443 45 56766655445 6666543222335544433 33 221 245577777888443344566799999
Q ss_pred CCCCeEEEEeEe
Q 044435 330 LDMHRVESFLVK 341 (378)
Q Consensus 330 l~~~~~~~v~~~ 341 (378)
++.+....|...
T Consensus 212 p~G~~~~~i~~p 223 (246)
T PF08450_consen 212 PDGKLLREIELP 223 (246)
T ss_dssp TTSCEEEEEE-S
T ss_pred CCccEEEEEcCC
Confidence 998878888665
No 38
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.94 E-value=0.99 Score=39.12 Aligned_cols=192 Identities=12% Similarity=0.021 Sum_probs=95.1
Q ss_pred ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-- 183 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-- 183 (378)
.+|.+++......++.+|+.|++...--..+..... . .... .+ +|+.... ...+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~---~--~~~~---~~--~v~v~~~------~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG---A--PVVD---GG--RVYVGTS------DGSLYALDAKTGKV 98 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS---G--EEEE---TT--EEEEEET------TSEEEEEETTTSCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc---e--eeec---cc--ccccccc------eeeeEecccCCcce
Confidence 677777777788899999999986544333322110 0 1111 11 2222221 126777876654
Q ss_pred cEE-ecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee--eee-cCCCCCCCC---CCcc
Q 044435 184 LWR-RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF--YSM-PMPGFGNEG---GGGE 256 (378)
Q Consensus 184 ~W~-~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~--~~i-~lP~~~~~~---~~~~ 256 (378)
.|+ ..... +. ............++.+|.....+ .|.++|+.+++- ..- ..|...... ....
T Consensus 99 ~W~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 99 LWSIYLTSS---PP--AGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN 166 (238)
T ss_dssp EEEEEE-SS---CT--CSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred eeeeccccc---cc--cccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence 798 34332 11 11111222333355566554433 799999887655 332 333321110 0011
Q ss_pred cceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEE-EEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 257 LSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLA-FSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 257 ~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~-~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
. .+...+|.+++.......+.+ -+.. .+..|... +.. ... ...+|+.+++...++.++++|++|++.
T Consensus 167 ~-~~~~~~~~v~~~~~~g~~~~~-d~~t--g~~~w~~~--~~~------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 167 G-SPVISDGRVYVSSGDGRVVAV-DLAT--GEKLWSKP--ISG------IYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp E-EEECCTTEEEEECCTSSEEEE-ETTT--TEEEEEEC--SS-------ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred c-ceEEECCEEEEEcCCCeEEEE-ECCC--CCEEEEec--CCC------ccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 1 333346766665544332333 2222 12236322 111 111 233577677777777899999999997
Q ss_pred EE
Q 044435 336 ES 337 (378)
Q Consensus 336 ~~ 337 (378)
.+
T Consensus 235 ~W 236 (238)
T PF13360_consen 235 VW 236 (238)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 39
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.86 E-value=0.0027 Score=56.15 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHhcCC-----ccccceeeecchhhhcccCChhHHHHHHhh
Q 044435 4 WKLPLDVIIDILIRLP-----GKSLLRFRCISKSFRSLIDSKDFINLHLSR 49 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP-----~~sl~r~r~VcK~W~~li~~p~F~~~~~~~ 49 (378)
..||||++.+||.++= ..+|.++.+|||.|+-...+|.|-+.....
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 4699999999998864 589999999999999999999998776553
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.80 E-value=0.91 Score=44.78 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435 5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN 44 (378)
Q Consensus 5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 44 (378)
.||-++...||..|+.+++.++++||+.|+.+..+.....
T Consensus 110 ~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 110 LLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 5899999999999999999999999999999998655544
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=95.49 E-value=0.025 Score=35.91 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=25.7
Q ss_pred Ccceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCC
Q 044435 205 GNGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMP 246 (378)
Q Consensus 205 ~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 246 (378)
+.++.+ ++.+|..++..........+..||+.+++|+.+ ++|
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 445666 589999998765333345789999999999998 555
No 42
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.05 E-value=1.6 Score=38.54 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=77.4
Q ss_pred cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCC-------CCcccceEEEECCeEEEEEcCC
Q 044435 203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEG-------GGGELSGVYVLKGCLSLLCKYS 274 (378)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~-------~~~~~~~l~~~~G~L~~~~~~~ 274 (378)
.....|+.||.+|+..... ..|+.||+.++... ...||...... ..-.+ .+++.+..|-++-...
T Consensus 70 ~GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~GLWvIYat~ 142 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDENGLWVIYATE 142 (250)
T ss_pred ccCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCCCEEEEEecC
Confidence 3455688899999998754 38999999999998 77888754331 11233 6788888888876654
Q ss_pred C---cEEEEEeccCC--CCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---Ce-EEEEECCCCeEEEEeE
Q 044435 275 E---PWDLWVMKEYG--VKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KD-HCWYHLDMHRVESFLV 340 (378)
Q Consensus 275 ~---~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~-~~~ydl~~~~~~~v~~ 340 (378)
. .+.|=.++... ...+|.-- ++-+.. --++--+|-+..+...+ .+ .++||+.+++-+.+.+
T Consensus 143 ~~~g~ivvskld~~tL~v~~tw~T~--~~k~~~---~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 143 DNNGNIVVSKLDPETLSVEQTWNTS--YPKRSA---GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred CCCCcEEEEeeCcccCceEEEEEec--cCchhh---cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 3 67777777532 23456532 111110 01111134433333332 23 6899999998888765
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.96 E-value=2.2 Score=36.91 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=76.3
Q ss_pred EEEEEEcCCC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCC
Q 044435 174 EATVYGLKVN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGN 250 (378)
Q Consensus 174 ~~~vyss~~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~ 250 (378)
.+..++..++ .|+.--.. .........+.-+|.+|.....+ .+.++|..+++-..- .++....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~~~~~~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP-------GIGGPVATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRFDLPGPIS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS-------SCSSEEETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEEECSSCGG
T ss_pred EEEEEECCCCCEEEEEECCC-------CCCCccceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEeecccccc
Confidence 4567777664 68874211 00000111344778888874332 799999866654333 4443322
Q ss_pred CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEE-EEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEE
Q 044435 251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSK-LFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWY 328 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~y 328 (378)
. .....+|.+++..... .++.++-...+..|.. ...-+. .. .......-.++.+++......++.+
T Consensus 70 ~-------~~~~~~~~v~v~~~~~---~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~~ 137 (238)
T PF13360_consen 70 G-------APVVDGGRVYVGTSDG---SLYALDAKTGKVLWSIYLTSSPPAGV--RSSSSPAVDGDRLYVGTSSGKLVAL 137 (238)
T ss_dssp S-------GEEEETTEEEEEETTS---EEEEEETTTSCEEEEEEE-SSCTCST--B--SEEEEETTEEEEEETCSEEEEE
T ss_pred c-------eeeeccccccccccee---eeEecccCCcceeeeecccccccccc--ccccCceEecCEEEEEeccCcEEEE
Confidence 1 2356678887777332 5556662223456874 322222 22 1222222236667777767789999
Q ss_pred ECCCCeEEEE
Q 044435 329 HLDMHRVESF 338 (378)
Q Consensus 329 dl~~~~~~~v 338 (378)
|+++++..+-
T Consensus 138 d~~tG~~~w~ 147 (238)
T PF13360_consen 138 DPKTGKLLWK 147 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ecCCCcEEEE
Confidence 9999987444
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.93 E-value=0.67 Score=40.54 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=94.1
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCC----ceeeeecCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI----ETFYSMPMPGF 248 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~----~~~~~i~lP~~ 248 (378)
....+|+..+++++.+... . ..++ ....+.-||.+.-.++...+. ..+..|++.+ ..|. ..|..
T Consensus 46 a~s~~yD~~tn~~rpl~v~----t--d~FC-Sgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~--e~~~~ 113 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQ----T--DTFC-SGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWT--ESPND 113 (243)
T ss_pred EEEEEEecCCCcEEeccCC----C--CCcc-cCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCce--ECccc
Confidence 4467899999999987543 1 1112 122455688888777664432 4677888765 3443 34433
Q ss_pred CCCCCCcccceEEE-ECCeEEEEEcCCC-cEEEEEeccCCC-CcceEEEEEec-CCCceeEE-EEEEeCCCEEEEEeCCC
Q 044435 249 GNEGGGGELSGVYV-LKGCLSLLCKYSE-PWDLWVMKEYGV-KDSWSKLFTMN-ENGYRVIP-LAFSSRGDKVLFQKNSK 323 (378)
Q Consensus 249 ~~~~~~~~~~~l~~-~~G~L~~~~~~~~-~l~iW~l~~~~~-~~~W~~~~~i~-~~~~~~~~-~~~~~~g~~v~~~~~~~ 323 (378)
+. ..++.. .... .||++.++.+... ..+.|=-..... ...|....... ......+| +.+.++|+ ||+....
T Consensus 114 m~-~~RWYp-T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~- 189 (243)
T PF07250_consen 114 MQ-SGRWYP-TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANR- 189 (243)
T ss_pred cc-CCCccc-cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcC-
Confidence 32 235666 4444 4899999998765 556553322111 11232222111 11112344 55667999 6666554
Q ss_pred eEEEEECCCCeE-EEE-eEeCCcceEEeeeccccCCC
Q 044435 324 DHCWYHLDMHRV-ESF-LVKGPSDVHVCVDTLVSPFA 358 (378)
Q Consensus 324 ~~~~ydl~~~~~-~~v-~~~~~~~~~~y~~slv~~~~ 358 (378)
+...||.+++++ +.+ .+.|..+.+|+.-+-|-++-
T Consensus 190 ~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecC
Confidence 478889999976 555 23322255666665554444
No 45
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.86 E-value=3.2 Score=42.37 Aligned_cols=204 Identities=10% Similarity=-0.002 Sum_probs=100.1
Q ss_pred eeccce--EEEeecCCcEEEE--cCcccceeecCCCCCCCCC--CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEE
Q 044435 104 GSCNGL--LALKNYPKGIILL--NPLTKKHRVLPKFYRDLHG--DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATV 177 (378)
Q Consensus 104 ~s~~GL--l~l~~~~~~~~V~--NP~t~~~~~LP~~~~~~~~--~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~v 177 (378)
+.-+|+ ||+.....-+++| |+.++.|..+-+...+... ..-..++++.+ ++ +-+++- ....+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~-~f~~~s-------~~~tv~~ 80 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN-HFLTGS-------EQNTVLR 80 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--cc-ceEEee-------ccceEEE
Confidence 445666 3333344456666 7888888877653322211 11122233332 22 222221 2456788
Q ss_pred EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCccc
Q 044435 178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGEL 257 (378)
Q Consensus 178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~ 257 (378)
|...++.=..+= .+ .......-.|..+|+.-..++++. .|-..++.+..-...-.+..... .
T Consensus 81 y~fps~~~~~iL-----~R--ftlp~r~~~v~g~g~~iaagsdD~------~vK~~~~~D~s~~~~lrgh~apV-----l 142 (933)
T KOG1274|consen 81 YKFPSGEEDTIL-----AR--FTLPIRDLAVSGSGKMIAAGSDDT------AVKLLNLDDSSQEKVLRGHDAPV-----L 142 (933)
T ss_pred eeCCCCCcccee-----ee--eeccceEEEEecCCcEEEeecCce------eEEEEeccccchheeecccCCce-----e
Confidence 877665322110 00 011112224445555666665553 45555554433222211211110 0
Q ss_pred ceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-CceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 258 SGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 258 ~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
.|.. -+|.+.++...++.+.||.+++.....+|..+..-.- . .....-.+.+++|..+.+..-++.+.+|+.++-.
T Consensus 143 -~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 143 -QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred -eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 2222 3688888888888999999997543455665432221 1 1224445667765445555445558888776655
Q ss_pred EE
Q 044435 335 VE 336 (378)
Q Consensus 335 ~~ 336 (378)
..
T Consensus 222 ~~ 223 (933)
T KOG1274|consen 222 LQ 223 (933)
T ss_pred eh
Confidence 44
No 46
>smart00284 OLF Olfactomedin-like domains.
Probab=94.66 E-value=2.7 Score=36.95 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=74.6
Q ss_pred cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCC-------CCcccceEEEECCeEEEEEcCC
Q 044435 203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEG-------GGGELSGVYVLKGCLSLLCKYS 274 (378)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~-------~~~~~~~l~~~~G~L~~~~~~~ 274 (378)
.....|+.||.+|+..... ..|+.||+.+++.... .||...-.. ..-.+ .+++.+..|-++-...
T Consensus 75 ~GtG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~GLWvIYat~ 147 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENGLWVIYATE 147 (255)
T ss_pred ccccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCceEEEEecc
Confidence 3455799999999977654 3799999999999644 677432111 11234 7888888888876543
Q ss_pred ---CcEEEEEeccCC--CCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe---CCCe-EEEEECCCCeEEEEeE
Q 044435 275 ---EPWDLWVMKEYG--VKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK---NSKD-HCWYHLDMHRVESFLV 340 (378)
Q Consensus 275 ---~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~---~~~~-~~~ydl~~~~~~~v~~ 340 (378)
+.|.|=+|++.. ...+|.--. +-+. . --++--+|.+.+... .+.+ .++||+.+++-+.+.+
T Consensus 148 ~~~g~ivvSkLnp~tL~ve~tW~T~~--~k~s--a-~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 148 QNAGKIVISKLNPATLTIENTWITTY--NKRS--A-SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CCCCCEEEEeeCcccceEEEEEEcCC--Cccc--c-cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 378888887642 234565421 1111 0 011111243222222 1223 7899999988777754
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.64 E-value=2.3 Score=39.57 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=83.4
Q ss_pred ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC--CCc---ceEEEEE--
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--PVY---HIEATVY-- 178 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--~~~---~~~~~vy-- 178 (378)
.+.-++..+...+.+|+|+.|+....+|.+..+... ...+.+ .+. +..+..... ... ...+|++
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~--pisv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRC--PISVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcc--eEEEEe-----CCe--EEEeeccCccccccCccceeEEEecc
Confidence 344566666667799999999999989987654321 111122 223 333322111 111 0144444
Q ss_pred E--------cCCCcEEecCcccCCCccccccc------cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-
Q 044435 179 G--------LKVNLWRRIKNIKNFPYSWADHS------YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM- 243 (378)
Q Consensus 179 s--------s~~~~W~~~~~~~~~p~~~~~~~------~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i- 243 (378)
+ ..+.+|+.++.+ |+ .... ..+.+|+ +|.-.|+...+.. ....+||+.+.+|+..
T Consensus 146 ~~~~~~~~~~~~w~W~~LP~P---Pf--~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLPPP---PF--VRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccCCCcceEEcCCCC---Cc--cccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCcceeecc
Confidence 3 223578888777 65 2221 2233455 8887787654311 2589999999999987
Q ss_pred --cCCCCCCC--CCCcccceEEEE--C--CeEEEEEcC
Q 044435 244 --PMPGFGNE--GGGGELSGVYVL--K--GCLSLLCKY 273 (378)
Q Consensus 244 --~lP~~~~~--~~~~~~~~l~~~--~--G~L~~~~~~ 273 (378)
.||-.... ..+... +++.+ + |.||.+...
T Consensus 216 dW~LPF~G~a~y~~el~~-W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 216 DWMLPFHGQAEYVPELDL-WFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred ceecCcCCccEECCCcCe-EEEeccCCCCcEEEEEecc
Confidence 78864332 223344 55554 2 377776654
No 48
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=0.53 Score=42.80 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=128.6
Q ss_pred ecCCcEEEEcC--cccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEe-cC--CCcceEEEEEEcCCCcEEec
Q 044435 114 NYPKGIILLNP--LTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF-KS--PVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 114 ~~~~~~~V~NP--~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~--~~~~~~~~vyss~~~~W~~~ 188 (378)
.....+++.|. -.+.|.++...|...+..... .. ..+...|....-- .. ..-...++.|++.+++|..+
T Consensus 55 s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~-a~-----~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl 128 (381)
T COG3055 55 SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVA-AV-----IGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKL 128 (381)
T ss_pred cCCccceehhhhcCCCCceEcccCCCcccccchh-ee-----eCCeEEEeeccccCCCCCceEeeeeEEecCCCChhhee
Confidence 34556677655 347888887777544321111 00 1122222222110 11 11234688999999999998
Q ss_pred CcccCCCccccccccCCcceeeCC-eEEEEeecCCC---------------------------------cccceEEEEEE
Q 044435 189 KNIKNFPYSWADHSYGGNGAFVNG-ALHWLANQNQD---------------------------------EMINDLILAFD 234 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~~~G-~lyw~~~~~~~---------------------------------~~~~~~i~~fD 234 (378)
+.. .|. + .....++.+++ .+|+.++.... ......+++||
T Consensus 129 ~t~--sP~--g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 129 DTR--SPT--G--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred ccc--ccc--c--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 754 244 2 23344566666 89988864320 11235799999
Q ss_pred cCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCC--C--cEEEEEeccCCCCcceEEEEEecC--CCceeEEE
Q 044435 235 LNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYS--E--PWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPL 307 (378)
Q Consensus 235 ~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~--~--~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~ 307 (378)
+.+++|+.. ..|-..... . .++.-+++|.++...- + +-.+|+.+-.+....|.+....+. ......+.
T Consensus 203 p~~n~W~~~G~~pf~~~aG----s-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvA 277 (381)
T COG3055 203 PSTNQWRNLGENPFYGNAG----S-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVA 277 (381)
T ss_pred cccchhhhcCcCcccCccC----c-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccc
Confidence 999999988 466443321 1 2333456788887643 2 667777765555678999876665 22113333
Q ss_pred EEEe---CCCEEEEEeC------------------------CCeEEEEECCCCeEEEEeEe--C-Cc-ceEEeeeccccC
Q 044435 308 AFSS---RGDKVLFQKN------------------------SKDHCWYHLDMHRVESFLVK--G-PS-DVHVCVDTLVSP 356 (378)
Q Consensus 308 ~~~~---~g~~v~~~~~------------------------~~~~~~ydl~~~~~~~v~~~--~-~~-~~~~y~~slv~~ 356 (378)
|... ++++++-... ..+++.+| .+.|+.+..- + .. -...|-+.+..|
T Consensus 278 Gaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~I 355 (381)
T COG3055 278 GAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLI 355 (381)
T ss_pred eeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEE
Confidence 3221 4543333210 11366666 8999988532 2 33 566777777777
Q ss_pred CCCCh
Q 044435 357 FAESN 361 (378)
Q Consensus 357 ~~~~~ 361 (378)
.....
T Consensus 356 GGE~~ 360 (381)
T COG3055 356 GGETS 360 (381)
T ss_pred ccccC
Confidence 65443
No 49
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.25 E-value=1.9 Score=40.73 Aligned_cols=190 Identities=9% Similarity=0.051 Sum_probs=106.2
Q ss_pred cCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcccCCCccccc
Q 044435 123 NPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNIKNFPYSWAD 200 (378)
Q Consensus 123 NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~~~~p~~~~~ 200 (378)
+|-++-|.+.--++..... .....+.|.|.. .+|-|.+ ...+.+|++.+..=+. +... .
T Consensus 8 t~e~~~w~~~~~~~~~ke~--~~vssl~fsp~~P~d~aVt~---------S~rvqly~~~~~~~~k~~srF--------k 68 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEH--NSVSSLCFSPKHPYDFAVTS---------SVRVQLYSSVTRSVRKTFSRF--------K 68 (487)
T ss_pred Cccchhhhhhccccccccc--CcceeEecCCCCCCceEEec---------ccEEEEEecchhhhhhhHHhh--------c
Confidence 5666777766444433221 123345555542 2343333 3579999997753222 1111 0
Q ss_pred cccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-ee---cCCCCCCCCCCcccceEEEECCeEEEEEcCCCc
Q 044435 201 HSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SM---PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP 276 (378)
Q Consensus 201 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~ 276 (378)
....+..+.-||.|...++..+ .|-.||+.+...- .+ ..|.+.. .....++.+.+.+.++..
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~~--------~f~~~d~t~l~s~sDd~v 134 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHVT--------KFSPQDNTMLVSGSDDKV 134 (487)
T ss_pred cceeEEEeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeEE--------EecccCCeEEEecCCCce
Confidence 0111224556799999887664 7999996653221 11 3332221 223345566555555558
Q ss_pred EEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEEEEeEeC--CcceEEeeec
Q 044435 277 WDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVESFLVKG--PSDVHVCVDT 352 (378)
Q Consensus 277 l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~~v~~~~--~~~~~~y~~s 352 (378)
..+|.+.... + ...+.. .+ +.+...+.+..+ +++-+..++++-.||.++..-+.+++++ +....+|.+|
T Consensus 135 ~k~~d~s~a~-----v-~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 135 VKYWDLSTAY-----V-QAELSGHTD-YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred EEEEEcCCcE-----E-EEEecCCcc-eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence 8999988631 2 444544 33 366666666444 4555566888999999999744446666 3366666665
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.14 E-value=8.7 Score=40.25 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=100.0
Q ss_pred eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc-EEe
Q 044435 109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL-WRR 187 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~-W~~ 187 (378)
.|.....+..+.|||..+++....- ..+ ......+.+++..+.+-+.+. ....+.+|+..++. ...
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~--~~H----~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEM--KEH----EKRVWSIDYSSADPTLLASGS-------DDGSVKLWSINQGVSIGT 613 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEe--cCC----CCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEECCCCcEEEE
Confidence 3333445667889998876643211 111 223446667665444433331 13467888876542 111
Q ss_pred cCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEEC
Q 044435 188 IKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLK 264 (378)
Q Consensus 188 ~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~ 264 (378)
+... ..-.++.+ +|.....+..+ ..|..||+.+..-....+..+.. .+..+...+
T Consensus 614 ~~~~-----------~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~~-----~V~~v~f~~ 671 (793)
T PLN00181 614 IKTK-----------ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHSK-----TVSYVRFVD 671 (793)
T ss_pred EecC-----------CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCCC-----CEEEEEEeC
Confidence 1110 00011211 35555555444 37999998764311111111111 111344457
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
|...+....++.+.||.+........|..+..+.........+++.++|.+++....++.+..|+....
T Consensus 672 ~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 776666666779999998753222346666665541112445677777886666766778999997655
No 51
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.06 E-value=5.2 Score=38.00 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=29.3
Q ss_pred eEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeEe
Q 044435 304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVK 341 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~~ 341 (378)
..+.....||+.|+|+... .++.||+++.++++++|.
T Consensus 269 YY~R~~nsDGkrIvFq~~G-dIylydP~td~lekldI~ 305 (668)
T COG4946 269 YYPRNANSDGKRIVFQNAG-DIYLYDPETDSLEKLDIG 305 (668)
T ss_pred ccccccCCCCcEEEEecCC-cEEEeCCCcCcceeeecC
Confidence 3344445588889998754 599999999999999886
No 52
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.04 E-value=1.5 Score=41.86 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=84.3
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--cEEecCcc--c
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--LWRRIKNI--K 192 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--~W~~~~~~--~ 192 (378)
.++.|+|-+|++|. +|..-... ...+++|||........|++..... ..+.=+.|.+... .|+++... .
T Consensus 57 DELHvYNTatnqWf-~PavrGDi---PpgcAA~GfvcdGtrilvFGGMvEY---GkYsNdLYELQasRWeWkrlkp~~p~ 129 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDI---PPGCAAFGFVCDGTRILVFGGMVEY---GKYSNDLYELQASRWEWKRLKPKTPK 129 (830)
T ss_pred hhhhhhccccceee-cchhcCCC---CCchhhcceEecCceEEEEccEeee---ccccchHHHhhhhhhhHhhcCCCCCC
Confidence 46889999999995 55433221 2245577777666665555543311 2344556666654 56665422 0
Q ss_pred CCCccccccccCCcceeeCCeEEEEeecCCCccc--------c--eEEEEEEcCCc--eeeee----cCCCCCCCCCCcc
Q 044435 193 NFPYSWADHSYGGNGAFVNGALHWLANQNQDEMI--------N--DLILAFDLNIE--TFYSM----PMPGFGNEGGGGE 256 (378)
Q Consensus 193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--------~--~~i~~fD~~~~--~~~~i----~lP~~~~~~~~~~ 256 (378)
.=|. .+.+..++-+.++.+.|..++..++... . .+++-+-...+ -|... .+|...+..
T Consensus 130 nG~p--PCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESH---- 203 (830)
T KOG4152|consen 130 NGPP--PCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESH---- 203 (830)
T ss_pred CCCC--CCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccc----
Confidence 0011 2334455556778899999876543211 1 23333333333 23221 333332221
Q ss_pred cceEE--EEC---CeEEEEEcCCC-c-EEEEEeccCCCCcceEEEE
Q 044435 257 LSGVY--VLK---GCLSLLCKYSE-P-WDLWVMKEYGVKDSWSKLF 295 (378)
Q Consensus 257 ~~~l~--~~~---G~L~~~~~~~~-~-l~iW~l~~~~~~~~W~~~~ 295 (378)
. .+. +-| -++++..+..+ + -++|.|+-. ..+|.+..
T Consensus 204 T-AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~--Tl~W~kp~ 246 (830)
T KOG4152|consen 204 T-AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD--TLTWNKPS 246 (830)
T ss_pred e-eEEEEeccCCcceEEEEcccccccccceeEEecc--eeeccccc
Confidence 1 111 222 25666655554 4 489999853 35798854
No 53
>smart00612 Kelch Kelch domain.
Probab=93.55 E-value=0.15 Score=31.44 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.3
Q ss_pred cceEEEEEEcCCCcEEecCcc
Q 044435 171 YHIEATVYGLKVNLWRRIKNI 191 (378)
Q Consensus 171 ~~~~~~vyss~~~~W~~~~~~ 191 (378)
....+++|+++++.|+..+.+
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~ 33 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSM 33 (47)
T ss_pred eeeeEEEECCCCCeEccCCCC
Confidence 356799999999999999877
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.39 E-value=7.3 Score=36.92 Aligned_cols=191 Identities=10% Similarity=0.015 Sum_probs=96.0
Q ss_pred ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-- 183 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-- 183 (378)
.+|.|.+......++.+|+.|++.+.--..+..... .+ .+ . +. +|+... ....+..++..++
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~s-sP---~v-~----~~-~v~v~~------~~g~l~ald~~tG~~ 182 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALS-RP---VV-S----DG-LVLVHT------SNGMLQALNESDGAV 182 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceec-CC---EE-E----CC-EEEEEC------CCCEEEEEEccCCCE
Confidence 466666665666788899999874432222211100 11 01 1 11 222211 1235777887765
Q ss_pred cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eee-ecCCCCCCCCC---Cccc
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYS-MPMPGFGNEGG---GGEL 257 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~-i~lP~~~~~~~---~~~~ 257 (378)
.|+.-... |. ........++..+|.+|+....+ .+.++|..+++ |+. +..|....... ....
T Consensus 183 ~W~~~~~~---~~--~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 183 KWTVNLDV---PS--LTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred eeeecCCC---Cc--ccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence 58875433 22 11112345777888888865443 68999988764 442 22232211100 0001
Q ss_pred ceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 258 SGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 258 ~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.-...+|.|++.... +. +..++-...+..|.... . .. ..+ .+ .++.|++...+++++++|.++++..
T Consensus 251 -sP~v~~~~vy~~~~~-g~--l~ald~~tG~~~W~~~~--~-~~--~~~-~~--~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 251 -TPVVVGGVVYALAYN-GN--LVALDLRSGQIVWKREY--G-SV--NDF-AV--DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred -CcEEECCEEEEEEcC-Ce--EEEEECCCCCEEEeecC--C-Cc--cCc-EE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 223456777765532 22 23333222234575421 1 10 111 12 3555777777778999999988643
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.34 E-value=7.4 Score=36.87 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=56.5
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEe
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVM 282 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l 282 (378)
..++..+|.+|.....+ .+.++|..+++ |+. +++.. . .++..+|+|++..... . +..+
T Consensus 250 ~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~--------~-~~~~~~~~vy~~~~~g-~--l~al 309 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGSV--------N-DFAVDGGRIYLVDQND-R--VYAL 309 (394)
T ss_pred CCcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCCc--------c-CcEEECCEEEEEcCCC-e--EEEE
Confidence 45788899999876543 69999988754 543 22210 0 2234455666554322 1 1122
Q ss_pred ccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 283 KEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 283 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
+-...+..|.... .... ....|+.. ++.|++...++.++++|.++++...
T Consensus 310 d~~tG~~~W~~~~-~~~~-~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 310 DTRGGVELWSQSD-LLHR-LLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred ECCCCcEEEcccc-cCCC-cccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 2111123353211 0000 11223322 3447777777789999999987544
No 56
>PF13964 Kelch_6: Kelch motif
Probab=93.24 E-value=0.24 Score=31.42 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCcEEEEcCcccceeecCCCCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRD 138 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~ 138 (378)
...+.++||.|++|..+|++|.+
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCCC
Confidence 45689999999999999998854
No 57
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.79 E-value=8.9 Score=36.26 Aligned_cols=120 Identities=14% Similarity=0.128 Sum_probs=73.1
Q ss_pred CCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEE
Q 044435 204 GGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWV 281 (378)
Q Consensus 204 ~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~ 281 (378)
+....+-+|. .-+.++.. ..+.+||+.+.+.+.+..|.+..... .. ...++ +|...++.+..+.|.+-.
T Consensus 261 ~~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~-~e--~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKS-ME--RFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred ceeeecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccch-hh--eeEecCCCCeEEEcccCceEEeeh
Confidence 3334555777 55555544 38999999999999998887765211 11 11222 445444444444444433
Q ss_pred eccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 282 MKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 282 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
... ..|.--..|.. ...-+.+..+|+.|+..+..+.++++|+++++.....
T Consensus 332 akT----~eli~s~KieG---~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 332 AKT----KELITSFKIEG---VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred hhh----hhhhheeeecc---EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 332 23544444432 1344566678887888877888999999999866653
No 58
>PLN02772 guanylate kinase
Probab=92.36 E-value=1.1 Score=42.13 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=53.0
Q ss_pred cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeec----CCCCCCCCCCcccceEEEECCeEEEEEcCCC-cE
Q 044435 203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMP----MPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-PW 277 (378)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~l 277 (378)
....++.++.++|.+++..........+.+||..+.+|.... .|..... +. .+..-+++|.++..... .-
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G----hS-a~v~~~~rilv~~~~~~~~~ 100 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG----YS-AVVLNKDRILVIKKGSAPDD 100 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc----ce-EEEECCceEEEEeCCCCCcc
Confidence 345689999999999976543223468999999999998652 2322221 11 33344789999887665 78
Q ss_pred EEEEecc
Q 044435 278 DLWVMKE 284 (378)
Q Consensus 278 ~iW~l~~ 284 (378)
+||.|+-
T Consensus 101 ~~w~l~~ 107 (398)
T PLN02772 101 SIWFLEV 107 (398)
T ss_pred ceEEEEc
Confidence 9999974
No 59
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.95 E-value=11 Score=35.20 Aligned_cols=202 Identities=10% Similarity=-0.038 Sum_probs=97.2
Q ss_pred CCcEEEEcCccccee-ecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE-ecCcccC
Q 044435 116 PKGIILLNPLTKKHR-VLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR-RIKNIKN 193 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~-~~~~~~~ 193 (378)
...+-|+|+.|.+.. .||-++.+..........|++.+... +- .+.+. .....+-|.+..+++=- +++.. .
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l--~V~n~---~p~~~V~VvD~~~~kvv~ei~vp-~ 148 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK-TL--LFYQF---SPSPAVGVVDLEGKAFVRMMDVP-D 148 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC-EE--EEecC---CCCCEEEEEECCCCcEEEEEeCC-C
Confidence 456889999997754 45544433211112223455544432 22 22221 12456778887765332 22211 0
Q ss_pred CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcC
Q 044435 194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKY 273 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~ 273 (378)
+..............+.||.+.-+.....+.........||.++. -...-|...... . .. .-...+|.++++...
T Consensus 149 ~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~--~v~~rP~~~~~d-g-~~-~~vs~eG~V~~id~~ 223 (352)
T TIGR02658 149 CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE--YLINHPAYSNKS-G-RL-VWPTYTGKIFQIDLS 223 (352)
T ss_pred CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc--ccccCCceEcCC-C-cE-EEEecCCeEEEEecC
Confidence 111000011122245667777766654433222223344443211 111223111101 1 11 223345899988854
Q ss_pred CC---cEEEEEeccCCC-CcceEEEEEecCCCceeEEEEEEeCCCEEEEEe----------CCCeEEEEECCCCeEEE
Q 044435 274 SE---PWDLWVMKEYGV-KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK----------NSKDHCWYHLDMHRVES 337 (378)
Q Consensus 274 ~~---~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~----------~~~~~~~ydl~~~~~~~ 337 (378)
.. ....|.+...+. ++.|.. -.+.+++++++|..+|+.. ...++.++|.++++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP--------~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRP--------GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred CCcceecceeeeccccccccccCC--------CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 43 456676544332 234531 1256789998888777632 12469999999988554
No 60
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.87 E-value=0.38 Score=29.88 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcc
Q 044435 155 SDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNI 191 (378)
Q Consensus 155 ~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~ 191 (378)
.+...|++... ........+++|+..++.|+.++.|
T Consensus 11 ~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 11 GNKIYVIGGYD-GNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp TTEEEEEEEBE-STSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEeeec-ccCceeeeEEEEeCCCCEEEEcCCC
Confidence 34455555544 2355678999999999999999877
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.77 E-value=3.3 Score=38.73 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=76.5
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC-cEEEEEeccC
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-PWDLWVMKEY 285 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~l~iW~l~~~ 285 (378)
.++=||-|+-.+..+. .+-.||+.+.. ..-.+|.+-... - .+...++.-+++...+. .+.+|-|...
T Consensus 354 ~fHpDgLifgtgt~d~------~vkiwdlks~~-~~a~Fpght~~v----k-~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDG------VVKIWDLKSQT-NVAKFPGHTGPV----K-AISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred eEcCCceEEeccCCCc------eEEEEEcCCcc-ccccCCCCCCce----e-EEEeccCceEEEEEecCCeEEEEEehhh
Confidence 4455777777665543 78999999887 445888754422 1 45666655566665554 7999998864
Q ss_pred CCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeE
Q 044435 286 GVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLV 340 (378)
Q Consensus 286 ~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~ 340 (378)
. .+.++.+ .......+.+...|.++.+...+-.++.|+-+++.|+++..
T Consensus 422 ~------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 422 K------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred c------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 2 2334444 33234556666678866666555568889999999999953
No 62
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.47 E-value=7.2 Score=34.49 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=65.7
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
-+|.+|=-++..+. ..|..+|+.+++.. ..++|...-. = .++..+++|+.++-.++..=++-.+
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~~~Fg-----E-Git~~~d~l~qLTWk~~~~f~yd~~----- 118 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPPRYFG-----E-GITILGDKLYQLTWKEGTGFVYDPN----- 118 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TTT--E-----E-EEEEETTEEEEEESSSSEEEEEETT-----
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCccccc-----e-eEEEECCEEEEEEecCCeEEEEccc-----
Confidence 46788876665432 58999999998775 4599875432 1 6788899999999877754444333
Q ss_pred cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
...++.++.. .. .-|+..+|+.+++..+..+++..|+++-+
T Consensus 119 -tl~~~~~~~y~~E----GWGLt~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 119 -TLKKIGTFPYPGE----GWGLTSDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp -TTEEEEEEE-SSS------EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred -cceEEEEEecCCc----ceEEEcCCCEEEEECCccceEEECCcccc
Confidence 2445555554 21 23444577768887777789999998754
No 63
>smart00612 Kelch Kelch domain.
Probab=91.32 E-value=0.72 Score=28.26 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=23.0
Q ss_pred EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCC
Q 044435 214 LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGF 248 (378)
Q Consensus 214 lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~ 248 (378)
||.+++... ......+.+||+.+++|+.+ ++|..
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCc
Confidence 566665432 12235799999999999987 55543
No 64
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=91.17 E-value=0.57 Score=29.55 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCeEEEEeecCC-CcccceEEEEEEcCCceeeee-cCCC
Q 044435 211 NGALHWLANQNQ-DEMINDLILAFDLNIETFYSM-PMPG 247 (378)
Q Consensus 211 ~G~lyw~~~~~~-~~~~~~~i~~fD~~~~~~~~i-~lP~ 247 (378)
|+++|..++... .......+.+||+.+.+|+.+ ++|.
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence 467888887662 223346799999999999999 5554
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.11 E-value=8.3 Score=36.18 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=55.5
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEec
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMK 283 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~ 283 (378)
..++..+|.+|.....+ .+.+||..+++-.+- .++..... ..+..++.+++... ++. ++.++
T Consensus 59 ~~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~~~~~~~~~~-------~p~v~~~~v~v~~~-~g~--l~ald 121 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG-------TVVALDAETGKRLWRVDLDERLSG-------GVGADGGLVFVGTE-KGE--VIALD 121 (377)
T ss_pred cceEEECCEEEEECCCC-------eEEEEEccCCcEeeeecCCCCccc-------ceEEcCCEEEEEcC-CCE--EEEEE
Confidence 34678889888876543 699999876554322 44443221 22333455544332 222 23333
Q ss_pred cCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 284 EYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 284 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
....+..|.... +. .....|+. .++.+++...++.++.+|+++++..
T Consensus 122 ~~tG~~~W~~~~--~~-~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 122 AEDGKELWRAKL--SS-EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred CCCCcEeeeecc--Cc-eeecCCEE---ECCEEEEECCCCeEEEEEcCCCcee
Confidence 211223454321 11 00011221 2445777766777999999887744
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.77 E-value=14 Score=34.34 Aligned_cols=172 Identities=12% Similarity=0.128 Sum_probs=90.5
Q ss_pred ceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc--EEecCcccCCCccccccccCCcceee--CCe-EEEEee
Q 044435 145 SLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL--WRRIKNIKNFPYSWADHSYGGNGAFV--NGA-LHWLAN 219 (378)
Q Consensus 145 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~--W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~-lyw~~~ 219 (378)
....+.++|..+...|..+ ....+.+|+...+. ....... .+|. +. ..+.+.+ +|+ +|.+.+
T Consensus 145 h~H~v~~~pdg~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~-~~~~--G~---GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSI-KVPP--GS---GPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEE-ECST--TS---SEEEEEE-TTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEec-------CCCEEEEEEEeCCCceEEEeecc-cccc--CC---CCcEEEEcCCcCEEEEecC
Confidence 4456677775444333221 24568888887654 5443221 0122 11 1112222 554 666655
Q ss_pred cCCCcccceEEEEEEcC--Cceeeee----cCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcce
Q 044435 220 QNQDEMINDLILAFDLN--IETFYSM----PMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSW 291 (378)
Q Consensus 220 ~~~~~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W 291 (378)
... .|.+|+.. +..+..+ .+|...... ..-. .+... +| .||+.......+.++.++... ..-
T Consensus 212 ~s~------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~-~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g~l 281 (345)
T PF10282_consen 212 LSN------TVSVFDYDPSDGSLTEIQTISTLPEGFTGE-NAPA-EIAISPDGRFLYVSNRGSNSISVFDLDPAT--GTL 281 (345)
T ss_dssp TTT------EEEEEEEETTTTEEEEEEEEESCETTSCSS-SSEE-EEEE-TTSSEEEEEECTTTEEEEEEECTTT--TTE
T ss_pred CCC------cEEEEeecccCCceeEEEEeeecccccccc-CCce-eEEEecCCCEEEEEeccCCEEEEEEEecCC--Cce
Confidence 543 67777766 6666554 455433221 1112 44444 56 456656555689999996532 235
Q ss_pred EEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEE--ECCCCeEEEEe
Q 044435 292 SKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWY--HLDMHRVESFL 339 (378)
Q Consensus 292 ~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~y--dl~~~~~~~v~ 339 (378)
+.+..++......+-+.+.++|+.+++... ++.+.+| |.++++++.+.
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 555555541112556777889997777654 3345555 77899999885
No 67
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.47 E-value=6.4 Score=40.73 Aligned_cols=123 Identities=12% Similarity=-0.004 Sum_probs=66.4
Q ss_pred cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCC--ceeeee-cCCCCCC-------C--------------------C
Q 044435 203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI--ETFYSM-PMPGFGN-------E--------------------G 252 (378)
Q Consensus 203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~--~~~~~i-~lP~~~~-------~--------------------~ 252 (378)
....++.++|.+|.....+ .|.++|..+ +.|+.- ..+.... . .
T Consensus 186 ~e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~ 258 (764)
T TIGR03074 186 FQATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPAD 258 (764)
T ss_pred cccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccc
Confidence 3456899999999986654 799999875 456543 3332110 0 0
Q ss_pred CCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEE-EecC-CC-ceeEEEEEEeCCCEEEEEeC--------
Q 044435 253 GGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLF-TMNE-NG-YRVIPLAFSSRGDKVLFQKN-------- 321 (378)
Q Consensus 253 ~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i~~-~~-~~~~~~~~~~~g~~v~~~~~-------- 321 (378)
....+ .++..+|+|+.+....++. +|.....+. ..|..-. ..+. .. .-..|+.+ ++.|++...
T Consensus 259 ~~~rV-~~~T~Dg~LiALDA~TGk~-~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~---~g~VIvG~~v~d~~~~~ 332 (764)
T TIGR03074 259 CARRI-ILPTSDARLIALDADTGKL-CEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVA---GTTVVIGGRVADNYSTD 332 (764)
T ss_pred cCCEE-EEecCCCeEEEEECCCCCE-EEEecCCCc-eeeecccCcCCCcccccccCCEEE---CCEEEEEeccccccccc
Confidence 01123 4455677777777665543 466654332 2243211 1111 00 01122322 344666532
Q ss_pred --CCeEEEEECCCCeEEEE
Q 044435 322 --SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 322 --~~~~~~ydl~~~~~~~v 338 (378)
.+.+..||.+|++..+-
T Consensus 333 ~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred CCCcEEEEEECCCCcEeeE
Confidence 34599999999997776
No 68
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.23 E-value=10 Score=35.24 Aligned_cols=117 Identities=13% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCce--eee---ecCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEec
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIET--FYS---MPMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMK 283 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~---i~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~ 283 (378)
+|+..|+...+. +.|..|++..+. ... +.+|.+..- . .++.. +| .+|++.....++.+..++
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---R---h~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGSGP---R---HLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTSSE---E---EEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCCCC---c---EEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 577777776654 478888887665 533 466665432 1 44444 44 567777666688888888
Q ss_pred cCCCCcceEEEEEecC--CC----ceeEEEEEEeCCCEEEEEeC-CCeEEEEEC--CCCeEEEEeE
Q 044435 284 EYGVKDSWSKLFTMNE--NG----YRVIPLAFSSRGDKVLFQKN-SKDHCWYHL--DMHRVESFLV 340 (378)
Q Consensus 284 ~~~~~~~W~~~~~i~~--~~----~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl--~~~~~~~v~~ 340 (378)
.. ...++.+..+.. .. ....-+.++++|+.+++... ...+.+|++ ++++++.+..
T Consensus 223 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 223 PS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred cc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 42 235777777765 21 13556788889997777654 345778876 5678888743
No 69
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.08 E-value=11 Score=33.50 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred ccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
-+|-|-+.. ..+.+.-.||.++.--.+|.+...... .-.+..|+... +.+. ....-.++.|+..+.+
T Consensus 198 pdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g----sRriwsdpig~----~wit----twg~g~l~rfdPs~~s 265 (353)
T COG4257 198 PDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG----SRRIWSDPIGR----AWIT----TWGTGSLHRFDPSVTS 265 (353)
T ss_pred CCCcEEEEeccccceEEcccccCCcceecCCCccccc----ccccccCccCc----EEEe----ccCCceeeEeCccccc
Confidence 344443332 344567789999976677766542221 11334444322 1221 2235578899999999
Q ss_pred EEecCcccCCCccccccccCCcceeeC-CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCC
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFVN-GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFG 249 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~~-G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~ 249 (378)
|.+-.-+ . .. ....+.++| .-.-|+.+-+. ..|..||+++++|+.+++|...
T Consensus 266 W~eypLP----g---s~-arpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 266 WIEYPLP----G---SK-ARPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred ceeeeCC----C---CC-CCcceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCC
Confidence 9886432 1 11 111234443 33556655443 4899999999999999888644
No 70
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=88.99 E-value=3.4 Score=32.34 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=49.6
Q ss_pred EEEEEEcCCc--eeeeecCCCCCCCCC---------CcccceEEEECCeEEEEEcCC---------C-cEEEEEeccC-C
Q 044435 229 LILAFDLNIE--TFYSMPMPGFGNEGG---------GGELSGVYVLKGCLSLLCKYS---------E-PWDLWVMKEY-G 286 (378)
Q Consensus 229 ~i~~fD~~~~--~~~~i~lP~~~~~~~---------~~~~~~l~~~~G~L~~~~~~~---------~-~l~iW~l~~~-~ 286 (378)
.|+..|+-.+ .++.|+||....... .... .+++.+|+|-++.... . ++.+|.|... +
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R-~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYR-DVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCc-eEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 4788887754 677789987653321 1223 6788899998888642 1 6899999985 2
Q ss_pred CCcceEEEEEecC
Q 044435 287 VKDSWSKLFTMNE 299 (378)
Q Consensus 287 ~~~~W~~~~~i~~ 299 (378)
....|.+-+.++.
T Consensus 86 ~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 86 SSWEWKKDCEVDL 98 (131)
T ss_pred CCCCEEEeEEEEh
Confidence 2467999998886
No 71
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.03 E-value=17 Score=33.80 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=59.9
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC----------cEEEEEecc------CCCCcceE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----------PWDLWVMKE------YGVKDSWS 292 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----------~l~iW~l~~------~~~~~~W~ 292 (378)
.++.||.++...... |.... .+..- .....+|+||++..... .+++-.... .....+|.
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~-pk~~p--isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~ 161 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHS-PKRCP--ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR 161 (342)
T ss_pred CeEEEECCCCeEecc--CCCCC-CCcce--EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE
Confidence 599999998887744 33111 11111 33445888999886532 223322221 11123455
Q ss_pred EEEEecC-CCc-----eeEEEEEEeCCCEEEEEeCCC--eEEEEECCCCeEEEEe
Q 044435 293 KLFTMNE-NGY-----RVIPLAFSSRGDKVLFQKNSK--DHCWYHLDMHRVESFL 339 (378)
Q Consensus 293 ~~~~i~~-~~~-----~~~~~~~~~~g~~v~~~~~~~--~~~~ydl~~~~~~~v~ 339 (378)
..-.-+. ... .+.--+++ +|..|++..... ..|.||.++.+|++++
T Consensus 162 ~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 162 SLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred cCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 4222111 111 14455666 788898876654 5999999999999994
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.59 E-value=20 Score=31.00 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.1
Q ss_pred ccceEEEee-cCCcEEEEcCcccceee
Q 044435 106 CNGLLALKN-YPKGIILLNPLTKKHRV 131 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~ 131 (378)
.+|-.|+.. .++.+-+|||..+...+
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~lik 53 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIK 53 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceee
Confidence 466667765 56678899999887654
No 73
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.29 E-value=31 Score=32.80 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=65.5
Q ss_pred eeCCeEEEEeecCCCcccceEEEEEEcCCce---eeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC--cEEEEEec
Q 044435 209 FVNGALHWLANQNQDEMINDLILAFDLNIET---FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE--PWDLWVMK 283 (378)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~--~l~iW~l~ 283 (378)
..++.+|+++..+.. ...|++.|+.+.. |..+-.|.... ..+..+...++.|.+....++ +|.++.++
T Consensus 285 ~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~~----~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDED----VSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SSS----EEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCCc----eeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 457888888875432 2689999998765 55443332221 111144556888888887776 56665555
Q ss_pred cCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEe
Q 044435 284 EYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 284 ~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~ 339 (378)
..|.... +++ ...-...+....+++.++|...+ ..++.||+++++.+.++
T Consensus 358 -----~~~~~~~-~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 -----DGKESRE-IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ------TEEEEE-EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred -----CCcEEee-ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 1244433 332 22111222222356656666432 24999999999999885
No 74
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=86.01 E-value=22 Score=30.73 Aligned_cols=117 Identities=7% Similarity=0.050 Sum_probs=63.9
Q ss_pred eeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCc-ccceEEEE--CC--eEEEEEcC----C-CcEE
Q 044435 209 FVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGG-ELSGVYVL--KG--CLSLLCKY----S-EPWD 278 (378)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~-~~~~l~~~--~G--~L~~~~~~----~-~~l~ 278 (378)
.+||-+.. ... ..+...|+.|+++..+|.|......... .. .++.. .+ ++..+... . ...+
T Consensus 3 sCnGLlc~-~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~-~~G~d~~~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 3 PCDGLICF-SYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTY-FLGYDPIEKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred ccceEEEE-ecC-------CcEEEECCCCCCEEecCCCCCcccccccceE-EEeecccCCcEEEEEEEeecCCCCCccEE
Confidence 46788833 322 2699999999999999766542111111 11 23332 12 22222221 1 1666
Q ss_pred EEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEE-Ee
Q 044435 279 LWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVES-FL 339 (378)
Q Consensus 279 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~-v~ 339 (378)
|..+.. .+|..+...+........ ++.-+|.+.++..... .++.||+++++++. +.
T Consensus 74 Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~ 135 (230)
T TIGR01640 74 VYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP 135 (230)
T ss_pred EEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee
Confidence 766664 479887632221111222 4444777555554321 59999999999995 54
No 75
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.53 E-value=2.4 Score=40.53 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=49.5
Q ss_pred cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee----cCCCCCCCCCCcccce
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSG 259 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~ 259 (378)
.||++.... =|. ...+..+++|.+..-|-..++..++ ..+.+.+||..+++|..- ++|+.+.. +
T Consensus 18 rWrrV~~~t-GPv--PrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA-------~ 85 (830)
T KOG4152|consen 18 RWRRVQQST-GPV--PRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAA-------F 85 (830)
T ss_pred ceEEEeccc-CCC--CCccccchheeeeeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhh-------c
Confidence 688875320 022 3345677789998888887766543 235789999999999754 66776653 2
Q ss_pred EEEECC-eEEEEEc
Q 044435 260 VYVLKG-CLSLLCK 272 (378)
Q Consensus 260 l~~~~G-~L~~~~~ 272 (378)
-.+++| +|+++.+
T Consensus 86 GfvcdGtrilvFGG 99 (830)
T KOG4152|consen 86 GFVCDGTRILVFGG 99 (830)
T ss_pred ceEecCceEEEEcc
Confidence 234555 5655553
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.19 E-value=33 Score=32.11 Aligned_cols=190 Identities=12% Similarity=0.037 Sum_probs=90.1
Q ss_pred ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-- 183 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-- 183 (378)
.+|.+.+......++.+|+.|++.+.--..+.... ....+ .++ +|+... ....+..++..++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~p~v-----~~~-~v~v~~------~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL----SPPLV-----ANG-LVVVRT------NDGRLTALDAATGER 167 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee----cCCEE-----ECC-EEEEEC------CCCeEEEEEcCCCce
Confidence 46666665556677888888877543222221100 00000 112 222211 1234677777664
Q ss_pred cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eee-ecCCCCCCCCC---Cccc
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYS-MPMPGFGNEGG---GGEL 257 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~-i~lP~~~~~~~---~~~~ 257 (378)
.|+..... +. ........++..+|.+|.-...+ .+.++|..+++ |+. +..|....... ....
T Consensus 168 ~W~~~~~~---~~--~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 168 LWTYSRVT---PA--LTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred eeEEccCC---Cc--eeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence 68765433 21 11112244677788777544322 79999987654 432 22332111000 0001
Q ss_pred ceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 258 SGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 258 ~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
.....+|.+++.... +.+..+..+. .+..|.... .. . ..|. + .++.|++...++.++++|.++++.
T Consensus 236 -~p~~~~~~vy~~~~~-g~l~a~d~~t--G~~~W~~~~--~~-~--~~p~-~--~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 236 -DPVVDGGQVYAVSYQ-GRVAALDLRS--GRVLWKRDA--SS-Y--QGPA-V--DDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred -ccEEECCEEEEEEcC-CEEEEEECCC--CcEEEeecc--CC-c--cCce-E--eCCEEEEECCCCeEEEEECCCCcE
Confidence 223346666665432 3333333332 234465431 11 0 1122 2 244477776677799999988763
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.75 E-value=25 Score=31.79 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=63.2
Q ss_pred cceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeE---EEEEcCC-CcEEEE
Q 044435 206 NGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCL---SLLCKYS-EPWDLW 280 (378)
Q Consensus 206 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L---~~~~~~~-~~l~iW 280 (378)
.++.++|..-.-++.++ .|..||+.+..=.-+ --+.+.-. .|-. .+-+ .++...+ +.+.||
T Consensus 47 tavAVs~~~~aSGssDe------tI~IYDm~k~~qlg~ll~Hagsit-------aL~F-~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSDE------TIHIYDMRKRKQLGILLSHAGSIT-------ALKF-YPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred eEEEecceeEeccCCCC------cEEEEeccchhhhcceeccccceE-------EEEe-cCCcchhheeeecCCCcEEEE
Confidence 36888887666555553 799999987544333 22211100 1111 1222 4455444 489999
Q ss_pred EeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 281 VMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 281 ~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
..++ |.++..+.. ... +.-+.+|+.|.+-+-..++..+-..||-+++.-.
T Consensus 113 ~~~~------W~~~~slK~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 113 RVGS------WELLKSLKAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred EcCC------eEEeeeecccccc-cceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 8774 988888877 332 6668888888743334444445555555444333
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.53 E-value=9.7 Score=34.07 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeEeC
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~~~ 342 (378)
.+.|..+...++++++|.++..+.-. -+....... ..--++..++|.+||...-++.+-.+|+.+++.+.|....
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~~g~~~---~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQNSGQLV---PKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred cCceEEecccCCceEEEEEecCCccc---chhhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 45566677777899999999864211 111122111 1224566678988999988888999999999999997643
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.33 E-value=2.3 Score=26.57 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=18.4
Q ss_pred CeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcc
Q 044435 157 DYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNI 191 (378)
Q Consensus 157 ~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~ 191 (378)
...|++... ........+++|+..+++|+.++.+
T Consensus 14 ~i~v~GG~~-~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 14 SIYVFGGRD-SSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp EEEEE--EE-E-TEE---EEEEETTTTEEEE--SS
T ss_pred eEEEECCCC-CCCcccCCEEEEECCCCEEEECCCC
Confidence 344444433 2224566799999999999999766
No 80
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=83.55 E-value=22 Score=31.37 Aligned_cols=85 Identities=14% Similarity=0.263 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE-eEeC
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF-LVKG 342 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v-~~~~ 342 (378)
|.+.+.+..+..++||.+.. .++|+.+..++. ..--.+-++..+.|.++.-...+.-+..|--..+.++.+ .++|
T Consensus 27 g~ilAscg~Dk~vriw~~~~---~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG 103 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS---GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG 103 (312)
T ss_pred ceEEEeecCCceEEEEecCC---CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec
Q ss_pred -Cc--ceEEeeec
Q 044435 343 -PS--DVHVCVDT 352 (378)
Q Consensus 343 -~~--~~~~y~~s 352 (378)
++ ....+.+|
T Consensus 104 HEnEVK~Vaws~s 116 (312)
T KOG0645|consen 104 HENEVKCVAWSAS 116 (312)
T ss_pred cccceeEEEEcCC
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=83.28 E-value=37 Score=31.09 Aligned_cols=143 Identities=12% Similarity=0.139 Sum_probs=71.6
Q ss_pred eEEEEEEcC-CCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce-e-eeec-CC
Q 044435 173 IEATVYGLK-VNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET-F-YSMP-MP 246 (378)
Q Consensus 173 ~~~~vyss~-~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~-~~i~-lP 246 (378)
..+.+|+.. ++++..+... +. .. ....+.+ +|+..+.+.... ..|.+||+.+.. . ..+. ++
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~---~~--~~---~p~~i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAES---PL--PG---SPTHISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CcEEEEEECCCCceEEeeee---cC--CC---CceEEEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceeecc
Confidence 446667665 4667655443 22 11 1123333 476555554432 378889886421 1 1221 12
Q ss_pred CCCCCCCCcccceEEE-ECC-eEEEEEcCCCcEEEEEeccCCCCcceEE----EEEecCCCceeEEEEEEeCCCEEEEEe
Q 044435 247 GFGNEGGGGELSGVYV-LKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSK----LFTMNENGYRVIPLAFSSRGDKVLFQK 320 (378)
Q Consensus 247 ~~~~~~~~~~~~~l~~-~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~----~~~i~~~~~~~~~~~~~~~g~~v~~~~ 320 (378)
.... .. .+.. -+| .|++.....+.+.+|.++..+ .-.. ...++. ....+-+.++++|..++...
T Consensus 124 ~~~~---~~---~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g---~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 124 GLEG---CH---SANIDPDNRTLWVPCLKEDRIRLFTLSDDG---HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred CCCc---cc---EeEeCCCCCEEEEeeCCCCEEEEEEECCCC---cccccCCCceecCC-CCCCceEEECCCCCEEEEEe
Confidence 1110 01 2222 255 455555555699999987532 1111 011222 11134467788999776665
Q ss_pred C-CCeEEEEECC--CCeEEEE
Q 044435 321 N-SKDHCWYHLD--MHRVESF 338 (378)
Q Consensus 321 ~-~~~~~~ydl~--~~~~~~v 338 (378)
. +..+.+||++ +++++.+
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEE
Confidence 4 5668888886 4555544
No 82
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=83.15 E-value=36 Score=31.12 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=64.1
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcC--Cceeeee----cCCCCCCCCCCcccceEEE-ECCe-EEEEEcCCCcEEEEEe
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLN--IETFYSM----PMPGFGNEGGGGELSGVYV-LKGC-LSLLCKYSEPWDLWVM 282 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~l~iW~l 282 (378)
+|...+...... ..|.+||+. ++++..+ .+|...... .+.. .+.. -+|+ |++.......+.+|.+
T Consensus 185 dg~~lyv~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 185 NQQYAYCVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDT-RWAA-DIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-ccce-eEEECCCCCEEEEecCCCCeEEEEEE
Confidence 555544444322 378888876 3444333 234332111 1111 2222 2554 5554333458999988
Q ss_pred ccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEE--ECCCCeEEEEe
Q 044435 283 KEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWY--HLDMHRVESFL 339 (378)
Q Consensus 283 ~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~y--dl~~~~~~~v~ 339 (378)
+..+ ..++.+..++. .. .+-+.+.++|+.++.... ++.+.+| |..++.++.++
T Consensus 258 ~~~~--~~~~~~~~~~~~~~--p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 258 SEDG--SVLSFEGHQPTETQ--PRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred eCCC--CeEEEeEEEecccc--CCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 7643 34666666664 32 334677788987776653 4446666 55677787774
No 83
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=81.74 E-value=3.2 Score=31.00 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=29.8
Q ss_pred CcEEEEcCccc-ceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 117 KGIILLNPLTK-KHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 117 ~~~~V~NP~t~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
..++++||.|+ .|. |..+ ....+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCC------CceeEEEEecCCCcEEEEEEec
Confidence 35789999996 775 3333 2246688899999999999963
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.71 E-value=49 Score=31.46 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=57.4
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCC------CCcccceEEEECC-eEEEEEcCCCcEE
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEG------GGGELSGVYVLKG-CLSLLCKYSEPWD 278 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~------~~~~~~~l~~~~G-~L~~~~~~~~~l~ 278 (378)
+|++=..-|++.+.+.+ .|--.++-+.+--.+ ++|.+.... ..+.. .|+++.| -|.+....++.++
T Consensus 332 cv~~In~~HfvsGSdnG-----~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-sla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNG-----SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-SLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred eEEEecccceeeccCCc-----eEEEeeecccCceeEeeccccccCCcccccccccee-eeEecccCceEEecCCCCceE
Confidence 34443444555555442 455555554443322 333332211 12444 6778766 5666666777999
Q ss_pred EEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC
Q 044435 279 LWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN 321 (378)
Q Consensus 279 iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~ 321 (378)
+|+..+.- ..=..++.++. .+ +.-+++..+|..|+...+
T Consensus 406 LW~i~~g~--r~i~~l~~ls~~Gf--VNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 406 LWKIEDGL--RAINLLYSLSLVGF--VNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEecCCc--cccceeeecccccE--EEEEEEccCCCEEEEecc
Confidence 99998732 23444555554 22 556677778886666543
No 85
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=81.70 E-value=43 Score=30.77 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCCCcccceEEE-ECCeEEEEEc-CCCcEEEEEeccC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGGGGELSGVYV-LKGCLSLLCK-YSEPWDLWVMKEY 285 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~-~~~~l~iW~l~~~ 285 (378)
+|.+-|....+. +.|..||++.+..... .++++... . .|+. -+|+++.+.. -..++.+|..+..
T Consensus 155 ~~~~l~v~DLG~-----Dri~~y~~~dg~L~~~~~~~v~~G~GP---R---Hi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 155 DGRYLVVPDLGT-----DRIFLYDLDDGKLTPADPAEVKPGAGP---R---HIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCCEEEEeecCC-----ceEEEEEcccCccccccccccCCCCCc---c---eEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 577777777665 5799999887666544 44444332 1 3444 3677755554 4459999999875
Q ss_pred CCCcceEEEEEecC-C-C----ceeEEEEEEeCCCEEEEEeCCC-e--EEEEECCCCeEEEEeE
Q 044435 286 GVKDSWSKLFTMNE-N-G----YRVIPLAFSSRGDKVLFQKNSK-D--HCWYHLDMHRVESFLV 340 (378)
Q Consensus 286 ~~~~~W~~~~~i~~-~-~----~~~~~~~~~~~g~~v~~~~~~~-~--~~~ydl~~~~~~~v~~ 340 (378)
. .+-..+-+++. + . .+..-+.+.++|..++...+.. . +|..|..+++++-+..
T Consensus 224 ~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 224 V--GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred C--ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 2 34666655554 2 1 3456677788999666654432 2 6666888888888855
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.61 E-value=0.41 Score=44.61 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhcccCCh
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSK 40 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p 40 (378)
..||.|++..||+-|..+++.|++.+|+.|+.+..|-
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 4699999999999999999999999999999887653
No 87
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.41 E-value=45 Score=33.11 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCC---CCcccceEEEECCeEEEEEcCCCcE
Q 044435 204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEG---GGGELSGVYVLKGCLSLLCKYSEPW 277 (378)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~---~~~~~~~l~~~~G~L~~~~~~~~~l 277 (378)
...+++.+|.+|.....+ .|.++|..++ .|+.- ..|...... ..... .++..+|++++.....
T Consensus 62 ~stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~~~~v~v~t~dg--- 130 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALYDGKVFFGTLDA--- 130 (527)
T ss_pred ccCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccc-cceEECCEEEEEcCCC---
Confidence 345788999999876543 6999998764 55543 333221110 00011 2344566666544321
Q ss_pred EEEEeccCCCCcceEEEEEecC-C--CceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCeEEEE
Q 044435 278 DLWVMKEYGVKDSWSKLFTMNE-N--GYRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 278 ~iW~l~~~~~~~~W~~~~~i~~-~--~~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v 338 (378)
.+..++-...+..|.... .+. . .....|+.. ++ .|++... ++.+++||.+|++..+-
T Consensus 131 ~l~ALDa~TGk~~W~~~~-~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKN-GDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEECCCCCEEeeccc-ccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 234444322234565422 111 0 011223333 33 4666542 34699999999986654
No 88
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.62 E-value=51 Score=30.41 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=64.9
Q ss_pred cceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCCCcccc--e-EEEE--CCeEEEEEcCCC
Q 044435 206 NGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGGGGELS--G-VYVL--KGCLSLLCKYSE 275 (378)
Q Consensus 206 ~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~~--~-l~~~--~G~L~~~~~~~~ 275 (378)
.+++. +|.+||....+ .|...|+..+.-... .+-........+.++ + ++.- .|+||++.....
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp --EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred ccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 34443 36788877765 688888877653332 211100000011110 2 3332 579998775321
Q ss_pred -------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-C-CCeEEEEECCCCeEEEE
Q 044435 276 -------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-N-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 276 -------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~-~~~~~~ydl~~~~~~~v 338 (378)
-=+||+++-. +=.++.+|++ .. ...+++..+.+-.++.. . +..+++||..|++....
T Consensus 261 ~gsHKdpgteVWv~D~~----t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLK----THKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TT-TTS-EEEEEEEETT----TTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCCccCCceEEEEEECC----CCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 5689999863 2345677776 22 33577777777566543 3 45699999999975543
No 89
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=79.37 E-value=4.4 Score=38.80 Aligned_cols=148 Identities=12% Similarity=0.004 Sum_probs=85.1
Q ss_pred EEEEcCcccceeecCCCCCCCC-----CCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccC
Q 044435 119 IILLNPLTKKHRVLPKFYRDLH-----GDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKN 193 (378)
Q Consensus 119 ~~V~NP~t~~~~~LP~~~~~~~-----~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~ 193 (378)
+..=-|.+-+|-++|+...... ........+.+++.++-..+.+... +......+++|+.+.+.|..+..-+.
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd--G~~~l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD--GTQDLADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc--cchhHHHHHhhcCCcceeEEeecCCC
Confidence 3444678888988886652111 1133444677777766655555542 23345678999999999998864411
Q ss_pred CCccccccccCCcceeeCC--eEEEEeecCCC-----cccceEEEEEEcCCceeeeecCCCCCCCCC--CcccceEEEEC
Q 044435 194 FPYSWADHSYGGNGAFVNG--ALHWLANQNQD-----EMINDLILAFDLNIETFYSMPMPGFGNEGG--GGELSGVYVLK 264 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G--~lyw~~~~~~~-----~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~--~~~~~~l~~~~ 264 (378)
-|. .+..++.|..-. ++|-++..-.. -+.+.-+..||..+..|..+..-......+ -+.. .+.+.+
T Consensus 309 ~PG----~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDH-qM~Vd~ 383 (723)
T KOG2437|consen 309 GPG----ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDH-QMCVDS 383 (723)
T ss_pred CCc----chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecc-eeeEec
Confidence 132 122333444444 77777753221 133457999999999999985543321111 1222 445544
Q ss_pred Ce--EEEEEcC
Q 044435 265 GC--LSLLCKY 273 (378)
Q Consensus 265 G~--L~~~~~~ 273 (378)
.+ ||+.++.
T Consensus 384 ~k~~iyVfGGr 394 (723)
T KOG2437|consen 384 EKHMIYVFGGR 394 (723)
T ss_pred CcceEEEecCe
Confidence 33 7777764
No 90
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=79.22 E-value=3.5 Score=25.83 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.5
Q ss_pred CCcceEEEEEEcCCCcEEecCcc
Q 044435 169 PVYHIEATVYGLKVNLWRRIKNI 191 (378)
Q Consensus 169 ~~~~~~~~vyss~~~~W~~~~~~ 191 (378)
......+++|+.++++|+.++.+
T Consensus 26 ~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 26 GSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CcccceeEEEECCCCEEeecCCC
Confidence 44567899999999999998765
No 91
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=78.84 E-value=9.8 Score=28.81 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=30.0
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
.+.+.||.|+.|..+-+.+. ....+.+-+++..+.|+|++..
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~-----~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQ-----GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCC-----CcceEEEEEcCCCCEEEEEEee
Confidence 46788999999764433221 3345677788889999999865
No 92
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=78.29 E-value=3.6 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.0
Q ss_pred CCcceEEEEEEcCCCcEEecCcc
Q 044435 169 PVYHIEATVYGLKVNLWRRIKNI 191 (378)
Q Consensus 169 ~~~~~~~~vyss~~~~W~~~~~~ 191 (378)
......+++|+..+++|++++.+
T Consensus 15 ~~~~nd~~~~~~~~~~W~~~~~~ 37 (49)
T PF13415_consen 15 GTRLNDVWVFDLDTNTWTRIGDL 37 (49)
T ss_pred CCEecCEEEEECCCCEEEECCCC
Confidence 44556799999999999999766
No 93
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=77.95 E-value=60 Score=30.28 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=69.9
Q ss_pred eeeCCeEEEEeecCCCcccceEEEEEEcCCc------eeeeecC---CCCCCCCCCcccceEEEE--CCeEEEEEcC-C-
Q 044435 208 AFVNGALHWLANQNQDEMINDLILAFDLNIE------TFYSMPM---PGFGNEGGGGELSGVYVL--KGCLSLLCKY-S- 274 (378)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~------~~~~i~l---P~~~~~~~~~~~~~l~~~--~G~L~~~~~~-~- 274 (378)
.-.+|..+|....+ .|...|+... .|..+.. +..+... .++. ++.. +++||++... .
T Consensus 202 ~~~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~-g~q~--ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 202 SNKSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG-GWQQ--VAYHRARDRIYLLADQRAK 271 (352)
T ss_pred EcCCCcEEEEecCC-------eEEEEecCCCcceecceeeeccccccccccCCC-ccee--EEEcCCCCEEEEEecCCcc
Confidence 34479999998874 6888885442 3333311 1111111 1121 2332 4677775421 1
Q ss_pred -----CcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEeC-CCeEEEEECCCCe-EEEE
Q 044435 275 -----EPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQKN-SKDHCWYHLDMHR-VESF 338 (378)
Q Consensus 275 -----~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~~-~~~~~~ydl~~~~-~~~v 338 (378)
..-.||++|- .+++.+.+|.. .. ...+++.++|+ .++.... .+.+.++|..+.+ ++.+
T Consensus 272 ~thk~~~~~V~ViD~----~t~kvi~~i~vG~~--~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDA----KTGKRLRKIELGHE--IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEEC----CCCeEEEEEeCCCc--eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1347899885 46889999988 55 56678888998 5554442 3459999999886 4444
No 94
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=77.66 E-value=47 Score=30.32 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=62.5
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcce
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSW 291 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W 291 (378)
+.+||..-.+. .|+.+|+.++.-+.+..|...... .+...+|.|..+......++ .+. ...|
T Consensus 37 ~~L~w~DI~~~------~i~r~~~~~g~~~~~~~p~~~~~~------~~~d~~g~Lv~~~~g~~~~~---~~~---~~~~ 98 (307)
T COG3386 37 GALLWVDILGG------RIHRLDPETGKKRVFPSPGGFSSG------ALIDAGGRLIACEHGVRLLD---PDT---GGKI 98 (307)
T ss_pred CEEEEEeCCCC------eEEEecCCcCceEEEECCCCcccc------eeecCCCeEEEEccccEEEe---ccC---Ccee
Confidence 56899887664 899999999989989888766421 22223445444433211222 221 2345
Q ss_pred EEEEEecC--CCceeEEEEEEeCCCEEEEEeCC-----C-------eEEEEECCCCeEEEE
Q 044435 292 SKLFTMNE--NGYRVIPLAFSSRGDKVLFQKNS-----K-------DHCWYHLDMHRVESF 338 (378)
Q Consensus 292 ~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~~-----~-------~~~~ydl~~~~~~~v 338 (378)
++...+.. ...+..-..+.++|. +.+.... . .++.||+.+...+.+
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred EEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 55555543 223344466666777 6665433 1 399999855555544
No 95
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.26 E-value=73 Score=30.90 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=101.2
Q ss_pred eccceEEEe-ecCCcEEEEcCcccc--eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 105 SCNGLLALK-NYPKGIILLNPLTKK--HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 105 s~~GLl~l~-~~~~~~~V~NP~t~~--~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
+.+|-.+.. ....-+.+|++.+.+ ...-+ ..+ ......+.|.+.+. .++... ....+.|++..
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h----~~~v~~~~fs~d~~--~l~s~s------~D~tiriwd~~ 233 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLREL--SGH----TRGVSDVAFSPDGS--YLLSGS------DDKTLRIWDLK 233 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccc--ccc----ccceeeeEECCCCc--EEEEec------CCceEEEeecc
Confidence 445554333 355667888886655 22222 111 22233455544433 233322 24567788873
Q ss_pred CC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435 182 VN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG 259 (378)
Q Consensus 182 ~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~ 259 (378)
.+ .=+.+... +. ....-...-.|.+..-+..++ .|...|+.+.+.... ++.+... .. .
T Consensus 234 ~~~~~~~~l~gH---~~-----~v~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~-l~~hs~~---is--~ 293 (456)
T KOG0266|consen 234 DDGRNLKTLKGH---ST-----YVTSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRK-LKGHSDG---IS--G 293 (456)
T ss_pred CCCeEEEEecCC---CC-----ceEEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEe-eeccCCc---eE--E
Confidence 32 22333322 11 111223344566666665553 799999998444332 2322221 01 2
Q ss_pred EEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEE--EEEecC-CCc-eeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 260 VYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSK--LFTMNE-NGY-RVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 260 l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~--~~~i~~-~~~-~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+.. -+|.+.+....++.+.||-+.. |.+ ...+.. ... ....+.++++|+.++....+..+-.+|+...+
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 222 2677777776667999998875 332 222222 111 35667778899977777766678888888655
Q ss_pred EE
Q 044435 335 VE 336 (378)
Q Consensus 335 ~~ 336 (378)
.-
T Consensus 368 ~~ 369 (456)
T KOG0266|consen 368 SV 369 (456)
T ss_pred ce
Confidence 43
No 96
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=77.18 E-value=49 Score=28.78 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=67.2
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE--ECCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV--LKGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~--~~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
+|.+||..-... .|..+|+.+++...+.+|... .++. .+|+|+++... .+.+. +. . .
T Consensus 11 ~g~l~~~D~~~~------~i~~~~~~~~~~~~~~~~~~~---------G~~~~~~~g~l~v~~~~--~~~~~--d~-~-~ 69 (246)
T PF08450_consen 11 DGRLYWVDIPGG------RIYRVDPDTGEVEVIDLPGPN---------GMAFDRPDGRLYVADSG--GIAVV--DP-D-T 69 (246)
T ss_dssp TTEEEEEETTTT------EEEEEETTTTEEEEEESSSEE---------EEEEECTTSEEEEEETT--CEEEE--ET-T-T
T ss_pred CCEEEEEEcCCC------EEEEEECCCCeEEEEecCCCc---------eEEEEccCCEEEEEEcC--ceEEE--ec-C-C
Confidence 699999976653 899999999999988887611 2333 36788777643 22222 32 2 2
Q ss_pred cceEEEEEecC---CCceeEEEEEEeCCCEEEEEeC-C--------CeEEEEECCCCeEEEE
Q 044435 289 DSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQKN-S--------KDHCWYHLDMHRVESF 338 (378)
Q Consensus 289 ~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~~-~--------~~~~~ydl~~~~~~~v 338 (378)
..++....... ......-+++.++|. +++... . .+++.++.+ ++.+.+
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 46887777743 233344577778888 666532 1 358999998 777666
No 97
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=76.73 E-value=54 Score=29.10 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=76.9
Q ss_pred EecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc-eeeee
Q 044435 165 VFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE-TFYSM 243 (378)
Q Consensus 165 ~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i 243 (378)
+..+......+..|+..++.=.....+ |. ..+...-+.+++++|-++...+ ..+.||..+- .-..+
T Consensus 60 ESTG~yG~S~l~~~d~~tg~~~~~~~l---~~----~~FgEGit~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 60 ESTGLYGQSSLRKVDLETGKVLQSVPL---PP----RYFGEGITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEECSTTEEEEEEEETTTSSEEEEEE----TT----T--EEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEE
T ss_pred EeCCCCCcEEEEEEECCCCcEEEEEEC---Cc----cccceeEEEECCEEEEEEecCC------eEEEEccccceEEEEE
Confidence 334445567899999999864433333 33 1233445778999999998874 8999999753 33444
Q ss_pred cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC----ceeEEEEEEeCCCEEEE
Q 044435 244 PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG----YRVIPLAFSSRGDKVLF 318 (378)
Q Consensus 244 ~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~----~~~~~~~~~~~g~~v~~ 318 (378)
+.|... + .|+..+..|.+..+ .-.|+.++. .......+|.. .. ....-+=.. +|. |+-
T Consensus 127 ~y~~EG-----W---GLt~dg~~Li~SDG---S~~L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyA 189 (264)
T PF05096_consen 127 PYPGEG-----W---GLTSDGKRLIMSDG---SSRLYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYA 189 (264)
T ss_dssp E-SSS----------EEEECSSCEEEE-S---SSEEEEE-T----TT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEE
T ss_pred ecCCcc-----e---EEEcCCCEEEEECC---ccceEEECC----cccceEEEEEEEECCEECCCcEeEEEE-cCE-EEE
Confidence 555321 2 33433445555443 334555664 23555555554 21 001111111 565 555
Q ss_pred EeC-CCeEEEEECCCCeEEEE
Q 044435 319 QKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 319 ~~~-~~~~~~ydl~~~~~~~v 338 (378)
..- ...++..|++|+++...
T Consensus 190 NVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEE
Confidence 443 34599999999998766
No 98
>PRK05137 tolB translocation protein TolB; Provisional
Probab=76.46 E-value=74 Score=30.55 Aligned_cols=188 Identities=10% Similarity=0.065 Sum_probs=94.6
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
...++++|+.+++...+...+.. .....+.|.+.. ++.... ......+++++..++.-+.+... +
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~-------~~~~~~SPDG~~--la~~~~---~~g~~~Iy~~d~~~~~~~~Lt~~---~ 289 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM-------TFAPRFSPDGRK--VVMSLS---QGGNTDIYTMDLRSGTTTRLTDS---P 289 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc-------ccCcEECCCCCE--EEEEEe---cCCCceEEEEECCCCceEEccCC---C
Confidence 45799999999988777543321 113344443322 222221 12235677778887776665433 2
Q ss_pred ccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECC-eEEEEEcC
Q 044435 196 YSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG-CLSLLCKY 273 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~ 273 (378)
. . .......-+|. +++.....+. ..|..+|+.+++.+.+....... ... ... -+| .|.++...
T Consensus 290 ~--~---~~~~~~spDG~~i~f~s~~~g~----~~Iy~~d~~g~~~~~lt~~~~~~----~~~-~~S-pdG~~ia~~~~~ 354 (435)
T PRK05137 290 A--I---DTSPSYSPDGSQIVFESDRSGS----PQLYVMNADGSNPRRISFGGGRY----STP-VWS-PRGDLIAFTKQG 354 (435)
T ss_pred C--c---cCceeEcCCCCEEEEEECCCCC----CeEEEEECCCCCeEEeecCCCcc----cCe-EEC-CCCCEEEEEEcC
Confidence 1 0 01112223454 4444432221 36888888887776663211111 011 112 244 55555544
Q ss_pred CCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC------CeEEEEECCCCeEEEEe
Q 044435 274 SEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS------KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 274 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~------~~~~~ydl~~~~~~~v~ 339 (378)
.+...||.++-.+ ..... +.... ......+.+||..|++.... .+++.+|+.+++.+.+.
T Consensus 355 ~~~~~i~~~d~~~--~~~~~---lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 355 GGQFSIGVMKPDG--SGERI---LTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCceEEEEEECCC--CceEe---ccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 4455666666422 11211 11110 12234567788877665431 35999999988887775
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=76.32 E-value=54 Score=28.86 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=62.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEE-ECCeEEEE-EcCCCcEEEEEeccCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYV-LKGCLSLL-CKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~-~~~~~~l~iW~l~~~~~ 287 (378)
+|...+++.... ..|..||+.+.+. ..+................+.. .+|+..++ .....++.+|-++.
T Consensus 167 dg~~l~~~~~~~-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~--- 238 (300)
T TIGR03866 167 DGKELWVSSEIG-----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT--- 238 (300)
T ss_pred CCCEEEEEcCCC-----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---
Confidence 565544443221 2688999987654 3332211100000011102233 35655444 33344788886543
Q ss_pred CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeE-EEEeEe
Q 044435 288 KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRV-ESFLVK 341 (378)
Q Consensus 288 ~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~-~~v~~~ 341 (378)
|.....+.. .. ...+.+.++|+.|+... .++++.+||+++.+. +.+...
T Consensus 239 ---~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 239 ---YEVLDYLLVGQR--VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ---CcEEEEEEeCCC--cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 444443433 22 34567788998766653 356799999999884 666543
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=74.46 E-value=12 Score=35.52 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=46.0
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCe-EEEEECCCCeEEEEe
Q 044435 266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKD-HCWYHLDMHRVESFL 339 (378)
Q Consensus 266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~-~~~ydl~~~~~~~v~ 339 (378)
.|.++.+.+++++|..++.-- . .++..|.+ .. ......++++|.-+++..+..+ ++.||+++.++++|.
T Consensus 226 plllvaG~d~~lrifqvDGk~--N--~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKV--N--PKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred ceEEEecCCCcEEEEEecCcc--C--hhheeeeeccC-ccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 455555566688888887521 1 25566666 33 3556778889984444444444 999999999999995
No 101
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=73.82 E-value=56 Score=28.61 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCC-------CcccceEEEECCeEEEEEcCCC
Q 044435 204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGG-------GGELSGVYVLKGCLSLLCKYSE 275 (378)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~-------~~~~~~l~~~~G~L~~~~~~~~ 275 (378)
....|+.||.+|...... ..|+.||++++.- ....+|...-... ...+ .+++.+..|.++-...+
T Consensus 70 gTg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdi-D~avDE~GLWviYat~~ 142 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDI-DLAVDENGLWVIYATPE 142 (249)
T ss_pred ccceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccc-cceecccceeEEecccc
Confidence 445799999999988654 3799999998543 3335564332211 1234 66777777777766543
Q ss_pred ---cEEEEEeccC--CCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC---CCeE-EEEECCCCeEEEEeE
Q 044435 276 ---PWDLWVMKEY--GVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN---SKDH-CWYHLDMHRVESFLV 340 (378)
Q Consensus 276 ---~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~---~~~~-~~ydl~~~~~~~v~~ 340 (378)
.+.|=+|+.. ..+..|.-.. +.+.. --++.-.|-+..+... +..+ ++||..+++-+.+.+
T Consensus 143 ~~g~iv~skLdp~tl~~e~tW~T~~--~k~~~---~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 143 NAGTIVLSKLDPETLEVERTWNTTL--PKRSA---GNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred cCCcEEeeccCHHHhheeeeecccc--CCCCc---CceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 6766777752 1234563211 11110 0111112332223221 1223 799999999877754
No 102
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.11 E-value=1.2e+02 Score=31.18 Aligned_cols=110 Identities=14% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCcceeeC--CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE-EEECCeEEEEEcCCCcEEEE
Q 044435 204 GGNGAFVN--GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV-YVLKGCLSLLCKYSEPWDLW 280 (378)
Q Consensus 204 ~~~~v~~~--G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l-~~~~G~L~~~~~~~~~l~iW 280 (378)
+-+++.++ |.+-..+..+. ..|.+.++.+++.--+---..... . .| ....|.+.+....+.++++|
T Consensus 437 QfscvavD~sGelV~AG~~d~-----F~IfvWS~qTGqllDiLsGHEgPV-----s-~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDS-----FEIFVWSVQTGQLLDILSGHEGPV-----S-GLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeEEEEcCCCCEEEeeccce-----EEEEEEEeecCeeeehhcCCCCcc-----e-eeEEccccCeEEeccccceEEEE
Confidence 34577788 88888887664 679999999888765522111110 0 22 23367766666667799999
Q ss_pred EeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 281 VMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 281 ~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
-.-+ +|..+.+++. .. ..-+.+.++|+-|.+..-++.+-.||.+
T Consensus 506 ~if~-----s~~~vEtl~i~sd--vl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 506 DIFS-----SSGTVETLEIRSD--VLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred Eeec-----cCceeeeEeeccc--eeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 8775 4666666665 33 3344555555555555444445555444
No 103
>PRK04043 tolB translocation protein TolB; Provisional
Probab=71.44 E-value=91 Score=29.92 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=60.0
Q ss_pred EEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 229 LILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.|..+|+.+++-..+ ..+..... . .. .-+| +|.+.....+.-+||.++-.+ ..+..+..-+. . ...
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~-----~-~~-SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~~LT~~~~--~-d~~ 281 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVV-----S-DV-SKDGSKLLLTMAPKGQPDIYLYDTNT--KTLTQITNYPG--I-DVN 281 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEe-----e-EE-CCCCCEEEEEEccCCCcEEEEEECCC--CcEEEcccCCC--c-cCc
Confidence 789999988877766 43321110 1 11 1255 566665555577899887532 23544322221 1 112
Q ss_pred EEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEeEe
Q 044435 307 LAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFLVK 341 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~~~ 341 (378)
-.+.+||+.|++..... .++.+|+.+++.+++...
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 24677898777775432 599999999999888543
No 104
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.19 E-value=75 Score=28.18 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=38.3
Q ss_pred EECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 262 VLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 262 ~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
..+|++.++.....-. ..++. ..+=..+..|++ ...+..|+-+ +|. +++...++-+...|+++.
T Consensus 289 s~dgkv~il~~~~sl~---~~~s~--~g~lq~~~~~el~~eIFsSPvii--~gr-l~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 289 SGDGKVMILMTSKSLA---EISSN--GGELQNLEAIELSNEIFSSPVII--DGR-LLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cCCCcEEEEEeccccc---ccccC--CCccceEEEeecCcccccCCeEE--ccE-EEEEEccCeEEEEecccc
Confidence 3467766654433211 11221 233455677777 5555677776 355 888888887999998764
No 105
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=70.97 E-value=8.2 Score=37.06 Aligned_cols=130 Identities=10% Similarity=0.079 Sum_probs=75.6
Q ss_pred cCCcceeeCC--eEEEEeecCCCcccceEEEEEEcCCceeeeec----CCCCCCCCCCcccceEEEECCeEEEEEcCC--
Q 044435 203 YGGNGAFVNG--ALHWLANQNQDEMINDLILAFDLNIETFYSMP----MPGFGNEGGGGELSGVYVLKGCLSLLCKYS-- 274 (378)
Q Consensus 203 ~~~~~v~~~G--~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~-- 274 (378)
..+..|+-.| ++|-.++.++.. ...-...|+...+.|+.|. .|.... . -.+ .+-.++.+||+++-.-
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs-C--HRM-Vid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS-C--HRM-VIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh-h--hhh-hhhhhHhHHhhhhhcccc
Confidence 3444677777 999988765422 1124677889999999983 343221 1 111 2233456788776431
Q ss_pred -------CcEEEEEeccCCCCcceEEEEEecCCC-----ceeEEEEEEeCCCEEEEEeC-----C----CeEEEEECCCC
Q 044435 275 -------EPWDLWVMKEYGVKDSWSKLFTMNENG-----YRVIPLAFSSRGDKVLFQKN-----S----KDHCWYHLDMH 333 (378)
Q Consensus 275 -------~~l~iW~l~~~~~~~~W~~~~~i~~~~-----~~~~~~~~~~~g~~v~~~~~-----~----~~~~~ydl~~~ 333 (378)
.+-++|++|.. ...|.....-+... .+-+-+++..+..+|++-++ + ..+++||.+..
T Consensus 337 S~r~~~s~RsDfW~FDi~--~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~ 414 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDID--TNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ 414 (723)
T ss_pred ccccccccccceEEEecC--CceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCc
Confidence 16789999974 36798764222111 22334555433332433322 1 13999999999
Q ss_pred eEEEEe
Q 044435 334 RVESFL 339 (378)
Q Consensus 334 ~~~~v~ 339 (378)
.|+.+.
T Consensus 415 ~w~~l~ 420 (723)
T KOG2437|consen 415 TWKLLR 420 (723)
T ss_pred cHHHHH
Confidence 998773
No 106
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.84 E-value=12 Score=20.74 Aligned_cols=23 Identities=4% Similarity=-0.117 Sum_probs=18.9
Q ss_pred EEEEEeCCCeEEEEECCCCeEEE
Q 044435 315 KVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 315 ~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
.+++...++.++++|.++++..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 47788777889999999988664
No 107
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=69.73 E-value=79 Score=31.04 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=61.5
Q ss_pred ccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
.+|-+++.+ ++.++.||||..++ .|-.+.... .-.....-|.|.+++=.|+... ....+.+|+..+-+
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgH---taNIFsvKFvP~tnnriv~sgA------gDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFEYK--LLHSISTGH---TANIFSVKFVPYTNNRIVLSGA------GDKLIKLFDLDSSK 128 (758)
T ss_pred CCCCEEeecCCcceEEeecchhcc--eeeeeeccc---ccceeEEeeeccCCCeEEEecc------CcceEEEEeccccc
Confidence 567777775 67789999999544 333333322 2234455667777665555432 23567788776421
Q ss_pred EEecCc-c--cCCCccccccccCCcceeeCC-eEEEEeecCCCcccceEEEEEEcCC
Q 044435 185 WRRIKN-I--KNFPYSWADHSYGGNGAFVNG-ALHWLANQNQDEMINDLILAFDLNI 237 (378)
Q Consensus 185 W~~~~~-~--~~~p~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~ 237 (378)
=+-.+. + +.-..++.......-.+.-+| ..+|.+.+++ .|.-||+..
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG------tirQyDiRE 179 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG------TIRQYDIRE 179 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc------ceeeecccC
Confidence 111111 1 000000011111122444566 7899988774 789999875
No 108
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=69.60 E-value=70 Score=27.23 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=51.6
Q ss_pred EEEEEEcCCceee-eecCCCCCCCCCCcccceEEEEC-CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeE
Q 044435 229 LILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVLK-GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVI 305 (378)
Q Consensus 229 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~~-G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~ 305 (378)
.+..||+.+.+.. .+. .... .+..+.... +.+.+....++.+.+|.+.... ....+.. .. ...
T Consensus 116 ~i~~~~~~~~~~~~~~~--~~~~-----~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~-~i~ 181 (289)
T cd00200 116 TIKVWDVETGKCLTTLR--GHTD-----WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTG-EVN 181 (289)
T ss_pred eEEEEECCCcEEEEEec--cCCC-----cEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCcc-ccc
Confidence 7889998854432 223 1111 110333333 5555555446688899876421 1222222 11 144
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 306 PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 306 ~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
-+.+.+++..+++...++.+..||+++.+..
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 4666677766777776777999999865443
No 109
>PTZ00421 coronin; Provisional
Probab=69.41 E-value=1.2e+02 Score=29.85 Aligned_cols=64 Identities=6% Similarity=0.026 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
+.+.+....++.+.||-++.. .....+.. .. ....+.+.++|..++....++.+..||+++++.
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg------~~~~~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERG------KAVEVIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCC------eEEEEEcCCCC-ceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 345555666679999988752 22334433 22 255677778898777777777899999998764
No 110
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=69.19 E-value=80 Score=27.75 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=68.7
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~ 306 (378)
.|.+.|+.+..++...+|+..... . .|.+ .+|+..++....++.-+|.|........-+.++.+.. .. +..-
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i---~--sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSI---Q--SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred cEEEEEccCCccccccCCCCCcce---e--eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 699999999999998888766432 1 3444 4787777666667889999886432333444444444 22 1223
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCC-eEEEE
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMH-RVESF 338 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~-~~~~v 338 (378)
.-+.++++++.-+..+..+..++.++. +.+..
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCceeeEEE
Confidence 344568886666666667999999988 44433
No 111
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.48 E-value=40 Score=31.11 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
|..+.....+.++.+|.+.-. ....++.-...+++-+++++.|++|+-+..++.+-+||+++++-.+.
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTG------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred ccEEEeecccceEEEEeccCC------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 456666666679999988752 11222222334578889999999777777777799999999886655
No 112
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=66.96 E-value=2e+02 Score=31.46 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=106.6
Q ss_pred EeeeccceEEEee-cCCcEEEEcCcccceeecCCCCC-CCC------CCCCceeEEeeecCCCCeEEEEEEEecCCCcce
Q 044435 102 IIGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYR-DLH------GDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHI 173 (378)
Q Consensus 102 ~~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~-~~~------~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~ 173 (378)
.+++.+|.+.+.+ ...++.++++..+....+..... ... .......++.+|+..+...|. . ....
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa---D----t~n~ 646 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA---D----TENH 646 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE---e----CCCc
Confidence 5666688777776 56778899987655444443111 000 001123466777654432221 1 1123
Q ss_pred EEEEEEcCCCcEEecCcc--cC--CCcc-cc--ccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee
Q 044435 174 EATVYGLKVNLWRRIKNI--KN--FPYS-WA--DHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM 243 (378)
Q Consensus 174 ~~~vyss~~~~W~~~~~~--~~--~p~~-~~--~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i 243 (378)
.+.+++..++.=+.+... .. ...+ .. .......++.+ +|.+|+..... ..|..+|..+.....+
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVTRVF 720 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeEEEE
Confidence 466666655443332110 00 0000 00 00111224554 57788766544 3799999887765543
Q ss_pred cCCCCC---C-----CCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEE---------EEecC-----
Q 044435 244 PMPGFG---N-----EGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKL---------FTMNE----- 299 (378)
Q Consensus 244 ~lP~~~---~-----~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~---------~~i~~----- 299 (378)
.-.... . .........++.. +| .|+++.....++.+|-++..+ ..+.-- ..+..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecccccCcccccccCCCCch
Confidence 211000 0 0000111124443 44 588888766688888776421 112110 00000
Q ss_pred ---CCceeEEEEEEeCCCEEEEE-eCCCeEEEEECCCCeEEEE
Q 044435 300 ---NGYRVIPLAFSSRGDKVLFQ-KNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 300 ---~~~~~~~~~~~~~g~~v~~~-~~~~~~~~ydl~~~~~~~v 338 (378)
.+....-+++.++|+ +++. ..+.++..||++++++..+
T Consensus 799 ~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred hhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence 011122345567888 5554 4455799999999988765
No 113
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=66.82 E-value=90 Score=27.45 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=71.3
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGN 250 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~ 250 (378)
...+.+|+.+++.=..+... .. .......-+...+|.--+.+++++ .+-..|+..-..+.. ..|..+.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~---e~--h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~qR~~~~~spVn 128 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATF---EG--HTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSCQRNYQHNSPVN 128 (311)
T ss_pred CCeeEEEEccCCCCCceeEE---ec--cCCceEEEEEeecCeEEEecCCCc------eEEEEeccCcccchhccCCCCcc
Confidence 35688899887632221111 00 000011114556777655555543 788999998666554 5553332
Q ss_pred CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
.. .+-.-++.|.. +...+.+.||-|.+.. -+. .-|+........+.+.++|..+.-..+.+..++.++
T Consensus 129 ~v------vlhpnQteLis-~dqsg~irvWDl~~~~----c~~-~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 129 TV------VLHPNQTELIS-GDQSGNIRVWDLGENS----CTH-ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred eE------EecCCcceEEe-ecCCCcEEEEEccCCc----ccc-ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 10 11111334432 3334589999988631 110 012222223666778888885555555555888877
Q ss_pred CCC
Q 044435 331 DMH 333 (378)
Q Consensus 331 ~~~ 333 (378)
-++
T Consensus 197 ~~~ 199 (311)
T KOG0315|consen 197 LNH 199 (311)
T ss_pred cCC
Confidence 653
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=66.72 E-value=90 Score=27.40 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=83.9
Q ss_pred cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcccC
Q 044435 115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNIKN 193 (378)
Q Consensus 115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~~~ 193 (378)
.+..+.++|+.|++....-.... ... ++.+++... +-++... ....+.+|+..++.... +...
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~-----~~~--~l~~~~dg~-~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~-- 72 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ-----RPR--GITLSKDGK-LLYVCAS------DSDTIQVIDLATGEVIGTLPSG-- 72 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC-----CCC--ceEECCCCC-EEEEEEC------CCCeEEEEECCCCcEEEeccCC--
Confidence 34567888888876543322111 111 345555432 2112211 13457788888765533 2111
Q ss_pred CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEE-ECCeEEEEE
Q 044435 194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYV-LKGCLSLLC 271 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~ 271 (378)
. .. ..-.+.-+|...++..... ..+..+|+.+.+- ..++.+.... .+.. -+|.+.++.
T Consensus 73 --~--~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~~~~~~--------~~~~~~dg~~l~~~ 132 (300)
T TIGR03866 73 --P--DP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPVGVEPE--------GMAVSPDGKIVVNT 132 (300)
T ss_pred --C--Cc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeCCCCcc--------eEEECCCCCEEEEE
Confidence 0 00 0111222455333333221 2689999987543 2233221111 2232 367666665
Q ss_pred cCCC-cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeE
Q 044435 272 KYSE-PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRV 335 (378)
Q Consensus 272 ~~~~-~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~ 335 (378)
..+. .+.+|..+. ......+.. .. ...+.+.++|..+++... ++.+..||+++.+.
T Consensus 133 ~~~~~~~~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 133 SETTNMAHFIDTKT------YEIVDNVLVDQR--PRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred ecCCCeEEEEeCCC------CeEEEEEEcCCC--ccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 5444 333443322 222333322 22 233566778886666543 56799999998764
No 115
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.43 E-value=14 Score=21.60 Aligned_cols=24 Identities=8% Similarity=-0.144 Sum_probs=19.4
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEE
Q 044435 315 KVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 315 ~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.|++...++.++++|.+|++..+-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 377777777899999999997665
No 116
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.88 E-value=1.2e+02 Score=28.64 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=41.6
Q ss_pred ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEE-EEEEeCC-CEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 263 LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIP-LAFSSRG-DKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 263 ~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~-~~~~~~g-~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
-+|++.++.....++.+|-+++ |.++..-.. ....+.+ -|+.... ..|.-+..+.+++..+.++++.-.+
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEE------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred CCCcEEEEEcccCeeEEeecch------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 3789999998888999999985 433322222 1111222 2333322 3333334466799999988886544
No 117
>PF13854 Kelch_5: Kelch motif
Probab=65.66 E-value=15 Score=22.05 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=25.0
Q ss_pred ccCCcceeeCCeEEEEeecCC-CcccceEEEEEEcCC
Q 044435 202 SYGGNGAFVNGALHWLANQNQ-DEMINDLILAFDLNI 237 (378)
Q Consensus 202 ~~~~~~v~~~G~lyw~~~~~~-~~~~~~~i~~fD~~~ 237 (378)
+..++++.+++.||..++... .......+..||+.+
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 345668889999999998763 222335677777764
No 118
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.45 E-value=11 Score=22.22 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=18.2
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCC
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNI 237 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~ 237 (378)
..+++.+|.+|..+..+ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 44688899999887754 799999864
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=64.78 E-value=1.1e+02 Score=29.65 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=45.0
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEecc
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~ 284 (378)
-||.---++++. ..+-.+|+...+-+.- +++...... + .|+. .|-+||+.+..++.+.||-|.+
T Consensus 475 pdgrtLivGGea------stlsiWDLAapTprikaeltssapaC--y---ALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 475 PDGRTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAPAC--Y---ALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred CCCceEEecccc------ceeeeeeccCCCcchhhhcCCcchhh--h---hhhcCCccceeeeeccCCcEEEEEccc
Confidence 366666665553 3788899998887765 776543321 2 3444 4789999999999999998876
No 120
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.63 E-value=48 Score=30.63 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=53.7
Q ss_pred ccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEE-EEecC---------------CCcceEEEEEEcCCCcEEecC
Q 044435 126 TKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRI-HVFKS---------------PVYHIEATVYGLKVNLWRRIK 189 (378)
Q Consensus 126 t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~-~~~~~---------------~~~~~~~~vyss~~~~W~~~~ 189 (378)
--+|..|++.|.+..... ..++=+|+-.++.-.+|.. ...++ -.....-+||-...+.|+.+.
T Consensus 256 ~~~w~~l~~lp~~~~~~~-eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~G 334 (381)
T COG3055 256 NLKWLKLSDLPAPIGSNK-EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVG 334 (381)
T ss_pred ceeeeeccCCCCCCCCCc-cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeec
Confidence 356888877665543222 3334455554444334443 22222 123445667777799999999
Q ss_pred cccCCCccccccccCCcceeeCCeEEEEeecCCCc
Q 044435 190 NIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE 224 (378)
Q Consensus 190 ~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~ 224 (378)
.+ |. .... ..++.-++.+|.++++....
T Consensus 335 eL---p~--~l~Y--G~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 335 EL---PQ--GLAY--GVSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred cc---CC--Cccc--eEEEecCCcEEEEccccCCC
Confidence 88 66 3321 23567789999999876544
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=63.36 E-value=2.3e+02 Score=30.97 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=40.2
Q ss_pred ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec---------C--CCceeEEEEEEeCCCEEEEEe-CCCeEEEEEC
Q 044435 263 LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN---------E--NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHL 330 (378)
Q Consensus 263 ~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~---------~--~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl 330 (378)
.+|.|+++.....++.+|..+.. ....+.... . .+....-+++.++|. +++.. .+..+..+|+
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg----~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATK----RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCC----eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 46889888877778888876531 121111111 0 111234456667887 45544 4556889999
Q ss_pred CCCeE
Q 044435 331 DMHRV 335 (378)
Q Consensus 331 ~~~~~ 335 (378)
++++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98875
No 122
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=62.69 E-value=70 Score=31.54 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=60.3
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcc
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDS 290 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~ 290 (378)
--||..+... .|..||++.+.|-. +..-.... ..+ .+-.+ ..|..++..++.++.|-..+-..-..
T Consensus 146 cDly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~l----N~v-~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 146 CDLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGEL----NVV-SINEE-HGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccEEEeecCc-------ceEEEEccccccccccccccccc----eee-eecCc-cceEEecccCceEEEecchhhhhhee
Confidence 3466655443 69999999999843 22221111 111 22222 34455555566888887654211000
Q ss_pred eEEEEEecC-C----CceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 291 WSKLFTMNE-N----GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 291 W~~~~~i~~-~----~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
=.....|+. . ..-+..+.+.++|--+-++...+.++.||+++.+=-.+
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 000011111 1 11244456665676677777788899999998774444
No 123
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.53 E-value=1.6e+02 Score=28.54 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=96.3
Q ss_pred EeeeccceEEEe-ecCCcEEEEcC-cccce-eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEE
Q 044435 102 IIGSCNGLLALK-NYPKGIILLNP-LTKKH-RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVY 178 (378)
Q Consensus 102 ~~~s~~GLl~l~-~~~~~~~V~NP-~t~~~-~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vy 178 (378)
+.-+-+|..++. ..+..+-||+. ..+.. +.|...+ .....+.|++.+ +.-+-+ . ....+.|.
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-------~~v~~~~f~p~g-~~i~Sg-s------~D~tvriW 273 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-------TYVTSVAFSPDG-NLLVSG-S------DDGTVRIW 273 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC-------CceEEEEecCCC-CEEEEe-c------CCCcEEEE
Confidence 444456654444 35666778877 33233 2332111 123456666665 322222 1 23567777
Q ss_pred EcCCCcEEecCcccCCCccccccccCCcc--eeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcc
Q 044435 179 GLKVNLWRRIKNIKNFPYSWADHSYGGNG--AFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGE 256 (378)
Q Consensus 179 ss~~~~W~~~~~~~~~p~~~~~~~~~~~~--v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~ 256 (378)
+.+++.=... . .. . ...-.+ .--+|...+.+..+ ..|..+|+.++.......-....... ..
T Consensus 274 d~~~~~~~~~--l---~~--h--s~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~-~~ 337 (456)
T KOG0266|consen 274 DVRTGECVRK--L---KG--H--SDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSA-PV 337 (456)
T ss_pred eccCCeEEEe--e---ec--c--CCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCC-ce
Confidence 7777422211 0 10 1 111112 23457777776544 37999999999975211111111110 01
Q ss_pred cceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 257 LSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 257 ~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
. .+... +|+..++...+..+.+|.+........|.....- . .....+.. ..+|..++....+..+..+|+.++.
T Consensus 338 ~-~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 338 T-SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL-V-RCIFSPTL-STGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred e-EEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-c-eeEecccc-cCCCCeEEEEeCCceEEEEeCCccc
Confidence 1 23333 4444444444459999999864322223221100 0 00111111 3467767777777789999998643
No 124
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.08 E-value=1.4e+02 Score=27.81 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCcEEec-CcccCCCccccccccCCc-ceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eeeecCC-C
Q 044435 173 IEATVYGLKVNLWRRI-KNIKNFPYSWADHSYGGN-GAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYSMPMP-G 247 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~-~~~~~~p~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP-~ 247 (378)
..+.....++..|... ... ........ +++-+|++|.....+ .|.+||.++.. |+.-..+ .
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~-------~~~~~~~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~ 100 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSG-------GGGIYAGPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAV 100 (370)
T ss_pred eEEEcccCcceeeeeecccC-------ccceEeccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCcc
Confidence 3445555667788653 221 11112222 599999999985444 69999999876 6544333 0
Q ss_pred CCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEE
Q 044435 248 FGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCW 327 (378)
Q Consensus 248 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 327 (378)
... .. -+...+|+|++-.... .++.++.......|...... . .....+ .+..++. |++...++.++.
T Consensus 101 ~~~-----~~-~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~-v~~~s~~g~~~a 167 (370)
T COG1520 101 AQL-----SG-PILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGT-VYVGTDDGHLYA 167 (370)
T ss_pred eec-----cC-ceEEeCCeEEEecccc---eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcE-EEEecCCCeEEE
Confidence 111 11 2333478876655443 67777763334567654322 0 000111 1111333 555545567888
Q ss_pred EECCCCeEEEE
Q 044435 328 YHLDMHRVESF 338 (378)
Q Consensus 328 ydl~~~~~~~v 338 (378)
.|.++.+..+-
T Consensus 168 l~~~tG~~~W~ 178 (370)
T COG1520 168 LNADTGTLKWT 178 (370)
T ss_pred EEccCCcEEEE
Confidence 88887776444
No 125
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.84 E-value=24 Score=25.55 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=14.5
Q ss_pred CeEEEEECCCCeEEEE
Q 044435 323 KDHCWYHLDMHRVESF 338 (378)
Q Consensus 323 ~~~~~ydl~~~~~~~v 338 (378)
++++.||++|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 3699999999999988
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=59.64 E-value=27 Score=33.60 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=23.2
Q ss_pred EEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 305 IPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 305 ~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
..+++.++|-+++.+...++++.||++..+
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecccCC
Confidence 346677788877777777789999998776
No 127
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.45 E-value=1.4e+02 Score=27.19 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=110.4
Q ss_pred EEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC-----C
Q 044435 110 LALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV-----N 183 (378)
Q Consensus 110 l~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~-----~ 183 (378)
+.+.. ....++|+|+.+++-...=.++..+++ +-... |.+. ++ .+...+.+.....-.+-||+... +
T Consensus 20 vafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~--fs~d-G~--~LytTEnd~~~g~G~IgVyd~~~~~~ri~ 92 (305)
T PF07433_consen 20 VAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGV--FSPD-GR--LLYTTENDYETGRGVIGVYDAARGYRRIG 92 (305)
T ss_pred EEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEE--EcCC-CC--EEEEeccccCCCcEEEEEEECcCCcEEEe
Confidence 34443 445578999999987644333333221 11111 2222 22 23333323345566788898872 3
Q ss_pred cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc----ccceEEEEEEcCCceee-eecCCCCCCCCCCcccc
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE----MINDLILAFDLNIETFY-SMPMPGFGNEGGGGELS 258 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~ 258 (378)
+|....-- |...........=|+.||-|.=....+... ...-++.-+|..+++.. ...||+..... .+.
T Consensus 93 E~~s~GIG---PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l---SiR 166 (305)
T PF07433_consen 93 EFPSHGIG---PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL---SIR 166 (305)
T ss_pred EecCCCcC---hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc---cee
Confidence 44443333 331011111223466777776554332211 22346778888887754 44888765532 221
Q ss_pred eEEEE-CCeEEEEEcCCC-------cEEEEEeccCCCCcceEEEEEecC----CC-ceeEEEEEEeCCCEEEEEeCC-Ce
Q 044435 259 GVYVL-KGCLSLLCKYSE-------PWDLWVMKEYGVKDSWSKLFTMNE----NG-YRVIPLAFSSRGDKVLFQKNS-KD 324 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~-------~l~iW~l~~~~~~~~W~~~~~i~~----~~-~~~~~~~~~~~g~~v~~~~~~-~~ 324 (378)
.|+.. +|.+.+..+..+ -+-++.... . .....++. .+ .+...+++..+|..|.+.+.. +.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-----~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-----A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-----c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 56664 677777776643 233333322 1 11112221 11 347778888888867676653 35
Q ss_pred EEEEECCCCeEEEE
Q 044435 325 HCWYHLDMHRVESF 338 (378)
Q Consensus 325 ~~~ydl~~~~~~~v 338 (378)
+.++|..++++...
T Consensus 241 ~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 241 VAVWDAATGRLLGS 254 (305)
T ss_pred EEEEECCCCCEeec
Confidence 88999999998776
No 128
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=59.16 E-value=1.4e+02 Score=26.97 Aligned_cols=186 Identities=11% Similarity=0.134 Sum_probs=86.6
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcc-cCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNI-KNF 194 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~-~~~ 194 (378)
+..++|||-.|..-...-|+|+. -.+.-+|.|+++ | |.+.. -...+-||+..+..=+-.... -.+
T Consensus 76 DGklIvWDs~TtnK~haipl~s~------WVMtCA~sPSg~-~-VAcGG------LdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSS------WVMTCAYSPSGN-F-VACGG------LDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred CCeEEEEEcccccceeEEecCce------eEEEEEECCCCC-e-EEecC------cCceeEEEecccccccccceeeeee
Confidence 34457888887554443333322 233445555532 2 33332 135678888764211100000 001
Q ss_pred CccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCC
Q 044435 195 PYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS 274 (378)
Q Consensus 195 p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~ 274 (378)
+. ....-+.+-+++ --+-++..+. ....-.|+++.+-... +-.+... -..+ .+...+++.++....+
T Consensus 142 ~g---HtgylScC~f~d-D~~ilT~SGD-----~TCalWDie~g~~~~~-f~GH~gD--V~sl-sl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 142 AG---HTGYLSCCRFLD-DNHILTGSGD-----MTCALWDIETGQQTQV-FHGHTGD--VMSL-SLSPSDGNTFVSGGCD 208 (343)
T ss_pred cC---ccceeEEEEEcC-CCceEecCCC-----ceEEEEEcccceEEEE-ecCCccc--EEEE-ecCCCCCCeEEecccc
Confidence 21 111122244444 3333444332 1345566666543322 1111111 0111 2333467777777777
Q ss_pred CcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 275 EPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 275 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
..-.+|-+.+..- +..+..+......+.++++|.-+.-+..+.-.-.||++.++
T Consensus 209 ~~aklWD~R~~~c------~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 209 KSAKLWDVRSGQC------VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred cceeeeeccCcce------eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 7778887775211 11122111235567788888745444444457778888765
No 129
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=58.21 E-value=1.2e+02 Score=25.82 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=49.0
Q ss_pred EEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeE
Q 044435 229 LILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVI 305 (378)
Q Consensus 229 ~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~ 305 (378)
.|..||+.+.+. ..+..... .+..+... +|...++...++.+.+|.+... .....+.. .. ...
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~-~i~ 223 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTG-------EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHEN-GVN 223 (289)
T ss_pred cEEEEEccccccceeEecCcc-------ccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCC-ceE
Confidence 688899875433 22231111 11023332 4545555555668999987641 22222212 11 134
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 306 PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 306 ~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.+.+.+++.+++....++.+..||.++.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 4566666664444443677999999875543
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=57.65 E-value=1.5e+02 Score=27.02 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=68.4
Q ss_pred EEEEEEcCCceee-eecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC---CcceEEEEEec-C-CCc
Q 044435 229 LILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV---KDSWSKLFTMN-E-NGY 302 (378)
Q Consensus 229 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~---~~~W~~~~~i~-~-~~~ 302 (378)
.+++||.++-+.. ....-. .. ..+- .....+|+..++...+..++.....+... ..+=+..+.+. + +..
T Consensus 176 kllv~~a~t~e~vas~rits-~~---~IK~-I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITS-VQ---AIKQ-IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred eEEEEecchheeeeeeeech-he---eeeE-EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 7999998875331 111111 11 1111 23334788888887777777777664321 11122222221 1 222
Q ss_pred eeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEEe--EeC-Cc---ceEEeeeccccCCC
Q 044435 303 RVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESFL--VKG-PS---DVHVCVDTLVSPFA 358 (378)
Q Consensus 303 ~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v~--~~~-~~---~~~~y~~slv~~~~ 358 (378)
-+.-.++..+|++|+-... ...++.....++.+-+|- -+| .. .-++|.+.++|+.+
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s 313 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS 313 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence 3556788888985555442 224888899888887772 222 11 45677777777643
No 131
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=57.61 E-value=1.9e+02 Score=28.05 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=73.5
Q ss_pred eeccce-EEEeecCCcEEEEcCcccceeecCCC-CCCCCC-----CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEE
Q 044435 104 GSCNGL-LALKNYPKGIILLNPLTKKHRVLPKF-YRDLHG-----DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEAT 176 (378)
Q Consensus 104 ~s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~-~~~~~~-----~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 176 (378)
+..+|- +++. ....++++||.|....+|--- |..+.. ..+.-+.=-+....++|.++.- .-.+.
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS--------RGkaF 344 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS--------RGKAF 344 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe--------cCcEE
Confidence 445666 4444 455699999999887776422 221111 0111111112334555544331 12344
Q ss_pred EEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcc
Q 044435 177 VYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGE 256 (378)
Q Consensus 177 vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~ 256 (378)
|+.+..+-=-.++.. . +. .-..+..++.-..++..++ ..+.+||.++.+-..+.-+-+.-.
T Consensus 345 i~~~~~~~~iqv~~~----~--~V---rY~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~~lg~I~----- 405 (668)
T COG4946 345 IMRPWDGYSIQVGKK----G--GV---RYRRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEKDLGNIE----- 405 (668)
T ss_pred EECCCCCeeEEcCCC----C--ce---EEEEEccCCcceEEeccCC-----ceEEEEecCCceEEEeeCCccceE-----
Confidence 444433221122111 0 11 1112333444444444443 489999999998888855533211
Q ss_pred cceEEEE-CCeEEEEEcCCCcEEEEEeccC
Q 044435 257 LSGVYVL-KGCLSLLCKYSEPWDLWVMKEY 285 (378)
Q Consensus 257 ~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~ 285 (378)
.+.+. +|+-.++.. .+++||+.+-.
T Consensus 406 --av~vs~dGK~~vvaN--dr~el~vidid 431 (668)
T COG4946 406 --AVKVSPDGKKVVVAN--DRFELWVIDID 431 (668)
T ss_pred --EEEEcCCCcEEEEEc--CceEEEEEEec
Confidence 44444 566444442 37888888754
No 132
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=57.34 E-value=96 Score=29.16 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcc
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDS 290 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~ 290 (378)
+.++.+...+. ..|...|..+.+.... +........ .....+|+..++...++.+.++-+..
T Consensus 5 ~~l~~V~~~~~-----~~v~viD~~t~~~~~~i~~~~~~h~~------~~~s~Dgr~~yv~~rdg~vsviD~~~------ 67 (369)
T PF02239_consen 5 GNLFYVVERGS-----GSVAVIDGATNKVVARIPTGGAPHAG------LKFSPDGRYLYVANRDGTVSVIDLAT------ 67 (369)
T ss_dssp GGEEEEEEGGG-----TEEEEEETTT-SEEEEEE-STTEEEE------EE-TT-SSEEEEEETTSEEEEEETTS------
T ss_pred ccEEEEEecCC-----CEEEEEECCCCeEEEEEcCCCCceeE------EEecCCCCEEEEEcCCCeEEEEECCc------
Q ss_pred eEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEE
Q 044435 291 WSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVES 337 (378)
Q Consensus 291 W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~ 337 (378)
...+.+|.. .. ..-+++.++|++++.... ...+..+|.+|.+..+
T Consensus 68 ~~~v~~i~~G~~--~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 68 GKVVATIKVGGN--PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp SSEEEEEE-SSE--EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred ccEEEEEecCCC--cceEEEcCCCCEEEEEecCCCceeEecccccccee
No 133
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.08 E-value=27 Score=35.34 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
|++-++-+.-++.++||...+... ..|.... . .+.-+++.++|+..+++...+....|+.+..+++.=
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~V-v~W~Dl~----~--lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKV-VDWNDLR----D--LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred CCCcEeecccccceEEeecCcCee-Eeehhhh----h--hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 334344333455889998887543 2365443 1 266788899999999998888899999998887643
No 134
>PRK04792 tolB translocation protein TolB; Provisional
Probab=55.55 E-value=2e+02 Score=27.79 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=62.4
Q ss_pred CCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECC-eEEEEEcCCCcEEEEEeccCCC
Q 044435 211 NGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKG-CLSLLCKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 211 ~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~~~~l~iW~l~~~~~ 287 (378)
||. +.|.....+. ..|..+|+.+++-..+ ..+.... .. ... -+| +|.++...++..+||.++-.+
T Consensus 228 DG~~La~~s~~~g~----~~L~~~dl~tg~~~~lt~~~g~~~-----~~-~wS-PDG~~La~~~~~~g~~~Iy~~dl~t- 295 (448)
T PRK04792 228 DGRKLAYVSFENRK----AEIFVQDIYTQVREKVTSFPGING-----AP-RFS-PDGKKLALVLSKDGQPEIYVVDIAT- 295 (448)
T ss_pred CCCEEEEEEecCCC----cEEEEEECCCCCeEEecCCCCCcC-----Ce-eEC-CCCCEEEEEEeCCCCeEEEEEECCC-
Confidence 443 5565543321 3689999988776655 3442211 11 111 255 466655555567788776432
Q ss_pred CcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEEeE
Q 044435 288 KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESFLV 340 (378)
Q Consensus 288 ~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v~~ 340 (378)
..... +...........+.++|..|++.... ..++.+|+++++++.+..
T Consensus 296 -g~~~~---lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 296 -KALTR---ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred -CCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 22322 21110012234556788877776532 259999999999988853
No 135
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=53.19 E-value=66 Score=30.84 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=25.5
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeE-EEEe
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRV-ESFL 339 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~-~~v~ 339 (378)
+.+.+||..++-+..+++++.||-+|-++ .+++
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 56678999888888888999999987763 4443
No 136
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=52.64 E-value=2.4e+02 Score=27.78 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=80.2
Q ss_pred ccceEEEee-----------cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceE
Q 044435 106 CNGLLALKN-----------YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIE 174 (378)
Q Consensus 106 ~~GLl~l~~-----------~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 174 (378)
..||||+.. +...+++.+-- +.-..+|.....+ .+.+-+.+.+.+|-||.... ...
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP------Vhdv~W~~s~~EF~VvyGfM------PAk 295 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP------VHDVTWSPSGREFAVVYGFM------PAK 295 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC------ceEEEECCCCCEEEEEEecc------cce
Confidence 357888774 23345666544 4445555443221 33567778888899988865 456
Q ss_pred EEEEEcCCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCC
Q 044435 175 ATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEG 252 (378)
Q Consensus 175 ~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~ 252 (378)
+-||+.+.+-=-..+.- |+ +.+++ +|.+-.+++.++- +..|.+||+.+ ...|--+.....
T Consensus 296 vtifnlr~~~v~df~eg---pR---------N~~~fnp~g~ii~lAGFGNL---~G~mEvwDv~n--~K~i~~~~a~~t- 357 (566)
T KOG2315|consen 296 VTIFNLRGKPVFDFPEG---PR---------NTAFFNPHGNIILLAGFGNL---PGDMEVWDVPN--RKLIAKFKAANT- 357 (566)
T ss_pred EEEEcCCCCEeEeCCCC---Cc---------cceEECCCCCEEEEeecCCC---CCceEEEeccc--hhhccccccCCc-
Confidence 88888876633333332 33 23333 4777778877653 25799999987 333322221111
Q ss_pred CCcccceEEEE--CCeEEEEEcCCC------cEEEEEec
Q 044435 253 GGGELSGVYVL--KGCLSLLCKYSE------PWDLWVMK 283 (378)
Q Consensus 253 ~~~~~~~l~~~--~G~L~~~~~~~~------~l~iW~l~ 283 (378)
.+.+. +|.-++...... .+.||-..
T Consensus 358 ------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 358 ------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ------eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 33443 676666555432 56777554
No 137
>PF13013 F-box-like_2: F-box-like domain
Probab=51.48 E-value=4.6 Score=30.47 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecch
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISK 31 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK 31 (378)
.+||+||++.|+.......+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 3699999999999998877766555555
No 138
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=50.81 E-value=1.6e+02 Score=28.08 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=69.2
Q ss_pred ccceEEEee-----cCCcEEEEcCcccceeecCCCCCCC---CCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEE
Q 044435 106 CNGLLALKN-----YPKGIILLNPLTKKHRVLPKFYRDL---HGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATV 177 (378)
Q Consensus 106 ~~GLl~l~~-----~~~~~~V~NP~t~~~~~LP~~~~~~---~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~v 177 (378)
-+.|+++.- ...+++|+|..|++..+|....... ..+.-....=||--.++.+|++-... ....++
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~-----~~l~F~- 310 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM-----DGLEFE- 310 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC-----CCceEE-
Confidence 456666663 2348999999999998887654210 00011122223333455555443211 000000
Q ss_pred EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCccc
Q 044435 178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGEL 257 (378)
Q Consensus 178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~ 257 (378)
+.+.+ |. =...+|..-....+ .+.++.||+-..+. .-|..+..
T Consensus 311 --------r~vrS----PN-------------GEDvLYvF~~~~~g---~~~Ll~YN~I~k~v---~tPi~chG------ 353 (448)
T PF12458_consen 311 --------RKVRS----PN-------------GEDVLYVFYAREEG---RYLLLPYNLIRKEV---ATPIICHG------ 353 (448)
T ss_pred --------EEecC----CC-------------CceEEEEEEECCCC---cEEEEechhhhhhh---cCCeeccc------
Confidence 11111 11 02346666544433 26788998876554 34433331
Q ss_pred ceEEEECCeEEEEEcC-CC-----cEEEEEec
Q 044435 258 SGVYVLKGCLSLLCKY-SE-----PWDLWVMK 283 (378)
Q Consensus 258 ~~l~~~~G~L~~~~~~-~~-----~l~iW~l~ 283 (378)
+-...+|+|++.... ++ -++||...
T Consensus 354 -~alf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 354 -YALFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred -eeEecCCEEEEEecCCCCcceeccceeecCC
Confidence 223458999998876 22 67899865
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=50.54 E-value=2e+02 Score=26.14 Aligned_cols=117 Identities=11% Similarity=0.100 Sum_probs=60.0
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.|..+|+.+..-..|.--... + ...+ .-+ ...+.+..+.++.+|-.-..-. ....+. .-.+
T Consensus 76 ~vr~~Dln~~~~~~igth~~~-------i-~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~------~~~~d~---~kkV 138 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEG-------I-RCIEYSYEVGCVISGSWDKTIKFWDPRNKVV------VGTFDQ---GKKV 138 (323)
T ss_pred eEEEEEecCCcceeeccCCCc-------e-EEEEeeccCCeEEEcccCccEEEEecccccc------cccccc---CceE
Confidence 799999988665554221111 0 1111 112 2223333445888887653100 001111 1123
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeEEE------EeEeC------C---cceEEeeeccccCCCCChh
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRVES------FLVKG------P---SDVHVCVDTLVSPFAESNR 362 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~------v~~~~------~---~~~~~y~~slv~~~~~~~~ 362 (378)
.++.-.|+.+++.+.+.++++||++....-- ++++- + ..+..=.|--|.+..++.+
T Consensus 139 y~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 139 YCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 3444467778887888889999998765321 11110 1 1445555666777777776
No 140
>PRK04922 tolB translocation protein TolB; Provisional
Probab=50.43 E-value=2.4e+02 Score=27.07 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=76.1
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFG 249 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~ 249 (378)
...+.+++..++.-+.+... +. .. ......-+|. +++.....+. ..|..+|+.+++...+ .-+..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~---~g--~~---~~~~~SpDG~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~~~~- 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASF---RG--IN---GAPSFSPDGRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNHFGI- 293 (433)
T ss_pred CcEEEEEECCCCCEEEeccC---CC--Cc---cCceECCCCCEEEEEEeCCCC----ceEEEEECCCCCeEECccCCCC-
Confidence 45677888888776665433 21 11 1112223554 5554433221 3688899988776554 21111
Q ss_pred CCCCCcccceEEEECC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC---eE
Q 044435 250 NEGGGGELSGVYVLKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK---DH 325 (378)
Q Consensus 250 ~~~~~~~~~~l~~~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~---~~ 325 (378)
. ... ... -+| +|.+.....+...||.++-.+ .....+. ..... .....+.++|+.|++..... .+
T Consensus 294 ~----~~~-~~s-pDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt-~~g~~--~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 294 D----TEP-TWA-PDGKSIYFTSDRGGRPQIYRVAASG--GSAERLT-FQGNY--NARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred c----cce-EEC-CCCCEEEEEECCCCCceEEEEECCC--CCeEEee-cCCCC--ccCEEECCCCCEEEEEECCCCceeE
Confidence 0 111 111 255 455554444466788876432 2343322 11111 22356677898777765332 59
Q ss_pred EEEECCCCeEEEEe
Q 044435 326 CWYHLDMHRVESFL 339 (378)
Q Consensus 326 ~~ydl~~~~~~~v~ 339 (378)
+.+|+.+++.+.+.
T Consensus 363 ~v~d~~~g~~~~Lt 376 (433)
T PRK04922 363 AVMDLSTGSVRTLT 376 (433)
T ss_pred EEEECCCCCeEECC
Confidence 99999999988773
No 141
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=49.48 E-value=72 Score=30.25 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
||-|+.....++.+.||-+.+-. .+..++...-...-+.+.+||-.+.....+..+..+||+-.
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CceEEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 56666666566699999998632 23344441112566788888876666666666888888643
No 142
>PTZ00420 coronin; Provisional
Probab=49.43 E-value=2.9e+02 Score=27.79 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=59.5
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE--ECCeEEEEEc-CC---CcEEEEEecc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV--LKGCLSLLCK-YS---EPWDLWVMKE 284 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~--~~G~L~~~~~-~~---~~l~iW~l~~ 284 (378)
+|.+...+..+. .|..||+.+++-.. .++.+........+ .+.. .++...+..+ .. .++.||-+..
T Consensus 178 dG~lLat~s~D~------~IrIwD~Rsg~~i~-tl~gH~g~~~s~~v-~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 178 KGNLLSGTCVGK------HMHIIDPRKQEIAS-SFHIHDGGKNTKNI-WIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEecCC------EEEEEECCCCcEEE-EEecccCCceeEEE-EeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 577665554442 79999998765422 22222211000011 1111 2444444433 32 2799999886
Q ss_pred CCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 285 YGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 285 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.+ .-.....++.......|..-.++|.+++.+.++..+.+|++.++....+
T Consensus 250 ~~---~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 250 TT---SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CC---CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 32 1112223332111123444444576555566677799999988877666
No 143
>PRK00178 tolB translocation protein TolB; Provisional
Probab=49.08 E-value=2.4e+02 Score=26.83 Aligned_cols=189 Identities=13% Similarity=0.040 Sum_probs=96.4
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
...++++|..+++...+...+.. .....+.|.+ ++ ++.... . .....+++++..++..+.+... +
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~-------~~~~~~SpDG-~~-la~~~~-~--~g~~~Iy~~d~~~~~~~~lt~~---~ 286 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL-------NGAPAWSPDG-SK-LAFVLS-K--DGNPEIYVMDLASRQLSRVTNH---P 286 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC-------cCCeEECCCC-CE-EEEEEc-c--CCCceEEEEECCCCCeEEcccC---C
Confidence 34688999999988777644321 1123444432 22 222221 1 1235678889888887766433 1
Q ss_pred ccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCC
Q 044435 196 YSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS 274 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~ 274 (378)
. .. ......-+|. +++.....+. ..|..+|+.+++...+....... ... .....+..|++.....
T Consensus 287 ~--~~---~~~~~spDg~~i~f~s~~~g~----~~iy~~d~~~g~~~~lt~~~~~~----~~~-~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 287 A--ID---TEPFWGKDGRTLYFTSDRGGK----PQIYKVNVNGGRAERVTFVGNYN----ARP-RLSADGKTLVMVHRQD 352 (430)
T ss_pred C--Cc---CCeEECCCCCEEEEEECCCCC----ceEEEEECCCCCEEEeecCCCCc----cce-EECCCCCEEEEEEccC
Confidence 1 10 0111222454 6666543321 36888898887776663322111 111 1122233555555444
Q ss_pred CcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEEe
Q 044435 275 EPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 275 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v~ 339 (378)
+...||.++-.. .....+..-. .. ..| .+++||..+++.... .+++..+..++.-+.+.
T Consensus 353 ~~~~l~~~dl~t--g~~~~lt~~~-~~--~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 353 GNFHVAAQDLQR--GSVRILTDTS-LD--ESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CceEEEEEECCC--CCEEEccCCC-CC--CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 455677666422 2233222111 11 222 567788877776542 24888888877666664
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=48.09 E-value=3.1e+02 Score=27.74 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=30.4
Q ss_pred cEEEEEeccCCC--CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 276 PWDLWVMKEYGV--KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 276 ~l~iW~l~~~~~--~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
.+.+|.+...-. +..-.+...+.. ........++.++|+.|.+..-. ++..|-++
T Consensus 354 ~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~ 411 (691)
T KOG2048|consen 354 GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQ 411 (691)
T ss_pred cccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEec
Confidence 667787764311 112333344444 33347778888999988777633 24444443
No 145
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=47.35 E-value=58 Score=28.48 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=41.1
Q ss_pred CcEEEEEeccCC----CCcceEEEEEecC---CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 275 EPWDLWVMKEYG----VKDSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 275 ~~l~iW~l~~~~----~~~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+.+.=|...+.. -+..|..+-.+.. .......+-+.+..+-|++..+++.++..|+++++++..
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 455556654432 2456876643332 333344556665555588888888899999999999987
No 146
>PRK04792 tolB translocation protein TolB; Provisional
Probab=47.30 E-value=2.7e+02 Score=26.88 Aligned_cols=188 Identities=11% Similarity=0.048 Sum_probs=96.9
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
...++++|..+++...+...+.. .....+.|.+.. ++.... ......+++++.+++..+.+... .
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-------~~~~~wSPDG~~--La~~~~---~~g~~~Iy~~dl~tg~~~~lt~~---~ 305 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-------NGAPRFSPDGKK--LALVLS---KDGQPEIYVVDIATKALTRITRH---R 305 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-------cCCeeECCCCCE--EEEEEe---CCCCeEEEEEECCCCCeEECccC---C
Confidence 34689999999887766543321 113445554332 222222 12345677888888887776432 1
Q ss_pred ccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECC-eEEEEEcC
Q 044435 196 YSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG-CLSLLCKY 273 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~ 273 (378)
. . .......-+|. +++....... ..|..+|+.+.+...+....... ... ... -+| .|+++...
T Consensus 306 ~--~---~~~p~wSpDG~~I~f~s~~~g~----~~Iy~~dl~~g~~~~Lt~~g~~~----~~~-~~S-pDG~~l~~~~~~ 370 (448)
T PRK04792 306 A--I---DTEPSWHPDGKSLIFTSERGGK----PQIYRVNLASGKVSRLTFEGEQN----LGG-SIT-PDGRSMIMVNRT 370 (448)
T ss_pred C--C---ccceEECCCCCEEEEEECCCCC----ceEEEEECCCCCEEEEecCCCCC----cCe-eEC-CCCCEEEEEEec
Confidence 1 0 01111222454 5555433221 37888999888777663221111 111 121 255 55555544
Q ss_pred CCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC-C--eEEEEECCCCeEEEEe
Q 044435 274 SEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS-K--DHCWYHLDMHRVESFL 339 (378)
Q Consensus 274 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~-~--~~~~ydl~~~~~~~v~ 339 (378)
.+...||.++-.+ .....+.. ... ...| .+++||..|++.... + .++.+|.+++..+.+.
T Consensus 371 ~g~~~I~~~dl~~--g~~~~lt~--~~~-d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 371 NGKFNIARQDLET--GAMQVLTS--TRL-DESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCceEEEEEECCC--CCeEEccC--CCC-CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 4577888887432 22222211 111 1222 567788877775432 2 3788888777666664
No 147
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=47.24 E-value=2.4e+02 Score=26.25 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=62.2
Q ss_pred eEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 228 DLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.....+|..++.| ...++.+-... . .+.. .+|.+.+.....+.+.||....- ...|+....+.- ..-
T Consensus 86 D~AflW~~~~ge~-~~eltgHKDSV----t-~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~d----ieW 153 (399)
T KOG0296|consen 86 DLAFLWDISTGEF-AGELTGHKDSV----T-CCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVED----IEW 153 (399)
T ss_pred ceEEEEEccCCcc-eeEecCCCCce----E-EEEEccCceEEEecCCCccEEEEEcccC--ceEEEeecccCc----eEE
Confidence 3788889888883 33566554321 1 2233 36666666656679999998863 356876644432 223
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+.-|+.+.+++....++.+++|....+...++
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 44455566566666777899999888766666
No 148
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=47.02 E-value=3.3e+02 Score=27.72 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=48.3
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEE-EECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVY-VLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~ 306 (378)
.|.-.|+..|....+. ...+ +.. .+. ..++.+.+.++.+++++||.-++. ...|.+ ... ..-
T Consensus 201 ~Ir~w~~~ge~l~~~~----ghtn--~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~--------~q~I~lPtts-iWs 264 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMH----GHTN--FVY-SISMALSDGLIVSTGEDRTLRIWKKDEC--------VQVITLPTTS-IWS 264 (745)
T ss_pred eEEEEeccCceeeeee----ccce--EEE-EEEecCCCCeEEEecCCceEEEeecCce--------EEEEecCccc-eEE
Confidence 5777777666555441 1111 111 334 346788888888889999988742 233443 111 223
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
+.+..||| |+..+.++.+.+|-.+
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEec
Confidence 44445788 6666666655555433
No 149
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.99 E-value=70 Score=29.01 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=39.5
Q ss_pred cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 276 PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 276 ~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
++.||.|.+- =+.+.+|.. .- ..-+++...+.+|.+..+...+-.||+..+++-++.
T Consensus 379 TvKvWdLrNM-----RsplATIRtdS~--~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 379 TVKVWDLRNM-----RSPLATIRTDSP--ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred eEEEeeeccc-----cCcceeeecCCc--cceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 8999998862 233455554 22 223555555667777777778999999999998884
No 150
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=45.64 E-value=1.2e+02 Score=26.73 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKL 294 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~ 294 (378)
+|.+|.....+++++||++..-.....|.-.
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTYGLWKCV 308 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCchhhcccc
Confidence 8999999998899999999875443456543
No 151
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=45.27 E-value=3.1e+02 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.3
Q ss_pred eEEEEEEcCCceeeeecCCCCC
Q 044435 228 DLILAFDLNIETFYSMPMPGFG 249 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i~lP~~~ 249 (378)
..|...|-.-.+.+.+.+|...
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ceEEeccccccccccccCchhc
Confidence 3799999767778888999754
No 152
>PRK03629 tolB translocation protein TolB; Provisional
Probab=44.86 E-value=2.9e+02 Score=26.49 Aligned_cols=186 Identities=10% Similarity=0.050 Sum_probs=93.0
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
.++.|+|.-...-+.|-.... ......+.|.... ++.... . .....+.+++..++.-+.+... +.
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~-------~~~~p~wSPDG~~--la~~s~-~--~g~~~i~i~dl~~G~~~~l~~~---~~ 243 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSK--LAYVTF-E--SGRSALVIQTLANGAVRQVASF---PR 243 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCC-------ceeeeEEcCCCCE--EEEEEe-c--CCCcEEEEEECCCCCeEEccCC---CC
Confidence 467788776554444422110 1224445554432 222221 1 1234677788877765555433 22
Q ss_pred cccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE-ECCe-EEEEEc
Q 044435 197 SWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV-LKGC-LSLLCK 272 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~-~~G~-L~~~~~ 272 (378)
.. ......-+|. |++.....+. ..|..+|+.+.+...+ .-+.... ...- -+|+ |.++..
T Consensus 244 --~~---~~~~~SPDG~~La~~~~~~g~----~~I~~~d~~tg~~~~lt~~~~~~~--------~~~wSPDG~~I~f~s~ 306 (429)
T PRK03629 244 --HN---GAPAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDGRSNNT--------EPTWFPDSQNLAYTSD 306 (429)
T ss_pred --Cc---CCeEECCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEccCCCCCcC--------ceEECCCCCEEEEEeC
Confidence 11 1112223554 6665433221 2588899988776655 2221111 1111 2554 555554
Q ss_pred CCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEEe
Q 044435 273 YSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v~ 339 (378)
..+..+||.++-.+. .-. ++...........+.++|+.|++.... ..++.+|+++++++.+.
T Consensus 307 ~~g~~~Iy~~d~~~g--~~~---~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 307 QAGRPQVYKVNINGG--APQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred CCCCceEEEEECCCC--CeE---EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 445678888875332 122 221111012234567788877775432 24889999999988874
No 153
>PRK13684 Ycf48-like protein; Provisional
Probab=44.77 E-value=2.6e+02 Score=25.84 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=67.8
Q ss_pred EEEEcCC--CcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEE-EEcCCceeeeecCCCCCCCC
Q 044435 176 TVYGLKV--NLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILA-FDLNIETFYSMPMPGFGNEG 252 (378)
Q Consensus 176 ~vyss~~--~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~-fD~~~~~~~~i~lP~~~~~~ 252 (378)
.+|.+.+ .+|+.+... .. .. ........+..++..+... .++. .|-..++|+.++.+....-
T Consensus 153 ~i~~S~DgG~tW~~~~~~---~~--g~---~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~~~~~~l- 217 (334)
T PRK13684 153 AIYRTTDGGKNWEALVED---AA--GV---VRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQRNSSRRL- 217 (334)
T ss_pred eEEEECCCCCCceeCcCC---Cc--ce---EEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeCCCcccc-
Confidence 4666664 589987654 21 11 0111222233455554442 3333 3566678998866543221
Q ss_pred CCcccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-C-CCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 253 GGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-E-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 253 ~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
. .++. .+|+++++... +.+. +...+...+|+... .+ . ......-+.+.+++. +++....+.++.-.
T Consensus 218 ---~--~i~~~~~g~~~~vg~~-G~~~---~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~S~ 286 (334)
T PRK13684 218 ---Q--SMGFQPDGNLWMLARG-GQIR---FNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLVSK 286 (334)
T ss_pred ---e--eeeEcCCCCEEEEecC-CEEE---EccCCCCCcccccc-CCccccccceeeEEEcCCCC-EEEEcCCCeEEEeC
Confidence 1 2233 36778776543 3221 21112246898643 22 1 221223344555666 55555555455545
Q ss_pred CCCCeEEEEeE
Q 044435 330 LDMHRVESFLV 340 (378)
Q Consensus 330 l~~~~~~~v~~ 340 (378)
-..++|+.+..
T Consensus 287 d~G~tW~~~~~ 297 (334)
T PRK13684 287 DGGKTWEKDPV 297 (334)
T ss_pred CCCCCCeECCc
Confidence 55678888753
No 154
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.66 E-value=2.5e+02 Score=28.70 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=52.6
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL 307 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 307 (378)
.|...|+.+.+.. +|..........- .++. .++...+......-+++|.++...--++|+-.|.-| ...+
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P-----vi~m 111 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP-----VITM 111 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC-----eEEE
Confidence 6888888887775 4433322211111 2333 344444444444588999999754345687655433 3344
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 308 AFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.+.+.|.++--.+-++.+.+.|.+.+...
T Consensus 112 a~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 112 AFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred EEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 55555532222233445666666665554
No 155
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=44.13 E-value=2.8e+02 Score=26.11 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNE 251 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~ 251 (378)
..+.+++..++.-+.+... +. .. ......-+|. +++.....+. ..|..+|+.++....+.......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---~~--~~---~~~~~spDg~~l~~~~~~~~~----~~i~~~d~~~~~~~~l~~~~~~~- 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---PG--MN---GAPAFSPDGSKLAVSLSKDGN----PDIYVMDLDGKQLTRLTNGPGID- 280 (417)
T ss_pred cEEEEEECCCCCEEEeecC---CC--Cc---cceEECCCCCEEEEEECCCCC----ccEEEEECCCCCEEECCCCCCCC-
Confidence 5688888888765554332 11 10 0112223554 5554432221 36888999887766552111111
Q ss_pred CCCcccceEEEECC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC---eEEE
Q 044435 252 GGGGELSGVYVLKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK---DHCW 327 (378)
Q Consensus 252 ~~~~~~~~l~~~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~ 327 (378)
... ... .+| +|.+.....+...||.++-.+ ..+..+.. .... .....+.++|+.|++...+. .++.
T Consensus 281 ---~~~-~~s-~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~-~~~~--~~~~~~spdg~~i~~~~~~~~~~~i~~ 350 (417)
T TIGR02800 281 ---TEP-SWS-PDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTF-RGGY--NASPSWSPDGDLIAFVHREGGGFNIAV 350 (417)
T ss_pred ---CCE-EEC-CCCCEEEEEECCCCCceEEEEECCC--CCEEEeec-CCCC--ccCeEECCCCCEEEEEEccCCceEEEE
Confidence 011 111 255 455554444455777776432 23432211 1111 22345567888777776543 6999
Q ss_pred EECCCCeEEEEe
Q 044435 328 YHLDMHRVESFL 339 (378)
Q Consensus 328 ydl~~~~~~~v~ 339 (378)
||+.++.++.+.
T Consensus 351 ~d~~~~~~~~l~ 362 (417)
T TIGR02800 351 MDLDGGGERVLT 362 (417)
T ss_pred EeCCCCCeEEcc
Confidence 999998887774
No 156
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=44.10 E-value=3.4e+02 Score=27.07 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=45.2
Q ss_pred EEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCC----CCC-CCCceeEEeeecCCCCeEEEEEEEecCCCcceEE
Q 044435 101 IIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRD----LHG-DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEA 175 (378)
Q Consensus 101 ~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~----~~~-~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 175 (378)
.-+..+||||++.+....+-.|+|-+++....-..... +.. ......++.|... ...+-+ .. ..-.+
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aV-Gt-----s~G~v 252 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAV-GT-----STGSV 252 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC--ceeEEe-ec-----cCCcE
Confidence 45677999999998788899999999875543222211 111 1223334555332 222322 21 24568
Q ss_pred EEEEcCCCcE
Q 044435 176 TVYGLKVNLW 185 (378)
Q Consensus 176 ~vyss~~~~W 185 (378)
.||++++..=
T Consensus 253 ~iyDLRa~~p 262 (703)
T KOG2321|consen 253 LIYDLRASKP 262 (703)
T ss_pred EEEEcccCCc
Confidence 9999987643
No 157
>PRK04043 tolB translocation protein TolB; Provisional
Probab=44.03 E-value=3e+02 Score=26.40 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=101.3
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
...+++.|..|++-..|-..+.. .....+.|. +..-++.... .....+++++..++.++.+... +
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-------~~~~~~SPD-G~~la~~~~~----~g~~~Iy~~dl~~g~~~~LT~~---~ 276 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-------LVVSDVSKD-GSKLLLTMAP----KGQPDIYLYDTNTKTLTQITNY---P 276 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-------EEeeEECCC-CCEEEEEEcc----CCCcEEEEEECCCCcEEEcccC---C
Confidence 45789999999988877643311 112223332 2222222221 2346788888888889887544 2
Q ss_pred ccccccccCCcceeeCC-eEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECC-eEEEEEcC
Q 044435 196 YSWADHSYGGNGAFVNG-ALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG-CLSLLCKY 273 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~ 273 (378)
. . .......-|| .||+.....+. ..|...|+.+++...+-.-... .. .... +| .|.++...
T Consensus 277 ~--~---d~~p~~SPDG~~I~F~Sdr~g~----~~Iy~~dl~~g~~~rlt~~g~~------~~-~~SP-DG~~Ia~~~~~ 339 (419)
T PRK04043 277 G--I---DVNGNFVEDDKRIVFVSDRLGY----PNIFMKKLNSGSVEQVVFHGKN------NS-SVST-YKNYIVYSSRE 339 (419)
T ss_pred C--c---cCccEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEeCccCCCc------Cc-eECC-CCCEEEEEEcC
Confidence 1 1 1111233355 58887765432 3788899988877655221111 11 1222 44 45555543
Q ss_pred C------CcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEeE
Q 044435 274 S------EPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFLV 340 (378)
Q Consensus 274 ~------~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~~ 340 (378)
. ...+|+.++-.+ ..+..+..- .. .....+.+||+.|++..... .+..+++..+.-+.+..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~--g~~~~LT~~--~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNS--DYIRRLTAN--GV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCcccCCCCcEEEEEECCC--CCeEECCCC--CC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 2 136788877432 234322211 11 11244678999777765432 38899999887777743
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.51 E-value=33 Score=33.80 Aligned_cols=36 Identities=19% Similarity=0.649 Sum_probs=29.6
Q ss_pred eeEEEEEEeCCCEEEEEeCCCeEEEEECCCC--eEEEE
Q 044435 303 RVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH--RVESF 338 (378)
Q Consensus 303 ~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~--~~~~v 338 (378)
+...++++++|+.+++...++++++||+.-. -++.+
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence 4778899999999999999999999988755 45555
No 159
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=43.10 E-value=1.1e+02 Score=28.04 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=41.1
Q ss_pred CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcC
Q 044435 204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKY 273 (378)
Q Consensus 204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~ 273 (378)
..++-..+|++|.+..... .+...|..++++..+ .+|.... -|+-. |.+.++...
T Consensus 205 PhSPRWhdgrLwvldsgtG------ev~~vD~~~G~~e~Va~vpG~~r--------GL~f~-G~llvVgmS 260 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRG------ELGYVDPQAGKFQPVAFLPGFTR--------GLAFA-GDFAFVGLS 260 (335)
T ss_pred CcCCcEeCCeEEEEECCCC------EEEEEcCCCCcEEEEEECCCCCc--------cccee-CCEEEEEec
Confidence 3457788999999876543 799999999999988 8886554 33444 777777754
No 160
>PTZ00334 trans-sialidase; Provisional
Probab=42.45 E-value=1.7e+02 Score=30.50 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=50.2
Q ss_pred cceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEEC-CeEEEEEcCCC-cEEEEEe
Q 044435 206 NGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLK-GCLSLLCKYSE-PWDLWVM 282 (378)
Q Consensus 206 ~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~-G~L~~~~~~~~-~l~iW~l 282 (378)
++|.. ||.|-+-..-.........++.|-.+++.|..- .......+..+ .+.+.+ |+|.|+..+++ +-+|..-
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls---~g~s~~gC~~P-~I~EWe~gkLlM~t~C~dG~RrVYES 339 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLS---KGMSADGCSDP-SVVEWKEGKLMMMTACDDGRRRVYES 339 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEc---CCCCCCCCCCC-EEEEEcCCeEEEEEEeCCCCEEEEEE
Confidence 35544 677766543221122335678887777778543 22222224455 889996 99999998875 6566665
Q ss_pred ccCCCCcceEEE
Q 044435 283 KEYGVKDSWSKL 294 (378)
Q Consensus 283 ~~~~~~~~W~~~ 294 (378)
.| .+.+|++.
T Consensus 340 ~D--mG~tWtEA 349 (780)
T PTZ00334 340 GD--KGDSWTEA 349 (780)
T ss_pred CC--CCCChhhC
Confidence 55 34678763
No 161
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.78 E-value=65 Score=30.36 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
||.=.+++..++.+..|-++... .+.|.-+.. ....-+++..||+.+++...+.++..||.++..=+.+
T Consensus 323 Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~-----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l 391 (519)
T KOG0293|consen 323 DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRD-----PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGL 391 (519)
T ss_pred CCceeEecCCCCcEEEecCCcch-hhccccccc-----ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcc
Confidence 45444444445588899998743 356875542 2355678888999888888888899999988776633
No 162
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=41.62 E-value=3.5e+02 Score=26.50 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=12.7
Q ss_pred eEEEEECCCCeEEEE
Q 044435 324 DHCWYHLDMHRVESF 338 (378)
Q Consensus 324 ~~~~ydl~~~~~~~v 338 (378)
.++++|.+|++..+-
T Consensus 257 ~l~Ald~~tG~~~W~ 271 (488)
T cd00216 257 SIVALDADTGKVKWF 271 (488)
T ss_pred eEEEEcCCCCCEEEE
Confidence 599999999987765
No 163
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=41.29 E-value=4.4e+02 Score=27.56 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=70.6
Q ss_pred eeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee--cCCCCCCCCCCcccceEEEEC-CeEEEEEcCCCcEEEEEecc
Q 044435 208 AFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM--PMPGFGNEGGGGELSGVYVLK-GCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~~~l~~~~-G~L~~~~~~~~~l~iW~l~~ 284 (378)
+..-|.+-+++...+ .|..||+-.+.-+.- +-|.+-... . .++..+ +++.+....++.+..|.+..
T Consensus 456 vs~CGNF~~IG~S~G------~Id~fNmQSGi~r~sf~~~~ah~~~V----~-gla~D~~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKG------TIDRFNMQSGIHRKSFGDSPAHKGEV----T-GLAVDGTNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred EeccCceEEEeccCC------eEEEEEcccCeeecccccCccccCce----e-EEEecCCCceEEEccCcceEEEEecCC
Confidence 334577777776654 799999876543221 334332211 1 233322 46777777777888888776
Q ss_pred CCCCcceEEEEEecC----CC-------------------------------ceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 285 YGVKDSWSKLFTMNE----NG-------------------------------YRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 285 ~~~~~~W~~~~~i~~----~~-------------------------------~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
-.-..+|.+-+.+.. +. ....-+.+.++|..++....+..+..||
T Consensus 525 k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 525 KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 332334544333321 10 1234467778999888887777899999
Q ss_pred CCCCeEEE
Q 044435 330 LDMHRVES 337 (378)
Q Consensus 330 l~~~~~~~ 337 (378)
+-|..+-.
T Consensus 605 lpt~~lID 612 (910)
T KOG1539|consen 605 LPTGTLID 612 (910)
T ss_pred ccCcceee
Confidence 88877543
No 164
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=41.21 E-value=1.9e+02 Score=27.84 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=59.6
Q ss_pred EEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 229 LILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.+...|+.++.-..+ ..+...... .+.. +| +|.+....++..+||+++-.+. ..+.+...-.. .. .
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P-~fsp------DG~~l~f~~~rdg~~~iy~~dl~~~-~~~~Lt~~~gi---~~-~ 286 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAP-AFSP------DGSKLAFSSSRDGSPDIYLMDLDGK-NLPRLTNGFGI---NT-S 286 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCc-cCCC------CCCEEEEEECCCCCccEEEEcCCCC-cceecccCCcc---cc-C
Confidence 577777776655544 444332211 1222 45 6666666667999999997653 22332111110 01 1
Q ss_pred EEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEeEeC
Q 044435 307 LAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~~~~ 342 (378)
=...++|..|++..+.. .++.||++++..+.+...+
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 12346898888876432 4999999999999996544
No 165
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=41.14 E-value=3.1e+02 Score=25.79 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=89.9
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..++++|..+++...+...... ...+.+.+.+.. ++.... ......+++++.+++..+.+... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-------~~~~~~spDg~~--l~~~~~---~~~~~~i~~~d~~~~~~~~l~~~---~~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-------NGAPAFSPDGSK--LAVSLS---KDGNPDIYVMDLDGKQLTRLTNG---PG 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-------ccceEECCCCCE--EEEEEC---CCCCccEEEEECCCCCEEECCCC---CC
Confidence 5689999999876665433211 112445554332 222111 12234677788888766665432 11
Q ss_pred cccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCC-
Q 044435 197 SWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS- 274 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~- 274 (378)
.. ......-+|. |++....... ..|..+|+.+.....+....... ... . ..-+|+..+.....
T Consensus 279 --~~---~~~~~s~dg~~l~~~s~~~g~----~~iy~~d~~~~~~~~l~~~~~~~----~~~-~-~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 279 --ID---TEPSWSPDGKSIAFTSDRGGS----PQIYMMDADGGEVRRLTFRGGYN----ASP-S-WSPDGDLIAFVHREG 343 (417)
T ss_pred --CC---CCEEECCCCCEEEEEECCCCC----ceEEEEECCCCCEEEeecCCCCc----cCe-E-ECCCCCEEEEEEccC
Confidence 00 0111122554 5565543321 26888898887776653322111 111 1 12256554444433
Q ss_pred CcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEE
Q 044435 275 EPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESF 338 (378)
Q Consensus 275 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v 338 (378)
+...|+.++-.. ..+..+.. . .. .....+.++|..|++..... .++.++..++..+.+
T Consensus 344 ~~~~i~~~d~~~--~~~~~l~~-~-~~--~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 344 GGFNIAVMDLDG--GGERVLTD-T-GL--DESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CceEEEEEeCCC--CCeEEccC-C-CC--CCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 466676666432 22222211 1 11 11124566787666654322 366777766665555
No 166
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.70 E-value=2.9e+02 Score=25.29 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=52.8
Q ss_pred EeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccc
Q 044435 149 FGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMIN 227 (378)
Q Consensus 149 ~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~ 227 (378)
+-+++.+..|.|+. ...+.||.+++. .-+++.. |. ......+.++.....+.+++
T Consensus 174 v~w~~~Gd~F~v~~---------~~~i~i~q~d~A~v~~~i~~----~~------r~l~~~~l~~~~L~vG~d~~----- 229 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSG---------RNKIDIYQLDNASVFREIEN----PK------RILCATFLDGSELLVGGDNE----- 229 (362)
T ss_pred eEEcCCCCEEEEEe---------ccEEEEEecccHhHhhhhhc----cc------cceeeeecCCceEEEecCCc-----
Confidence 45555555555443 346788887653 2222221 11 01123445566555665553
Q ss_pred eEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEecc
Q 044435 228 DLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~ 284 (378)
.|..+|......-..-+-...+ -..+.....-++.+.+....++.+.||.++-
T Consensus 230 -~i~~~D~ds~~~~~~~~AH~~R---VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 230 -WISLKDTDSDTPLTEFLAHENR---VKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred -eEEEeccCCCccceeeecchhh---eeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 7889998873322221111111 0111012222455555555667999998874
No 167
>PRK02889 tolB translocation protein TolB; Provisional
Probab=40.08 E-value=3.4e+02 Score=25.94 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+..+++.....+.. .|..+|+.+++-..+ ..+...... ...-.+.+|.+....++..+||.++-.+..
T Consensus 207 G~~la~~s~~~~~~----~I~~~dl~~g~~~~l~~~~g~~~~~------~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~- 275 (427)
T PRK02889 207 GTKLAYVSFESKKP----VVYVHDLATGRRRVVANFKGSNSAP------AWSPDGRTLAVALSRDGNSQIYTVNADGSG- 275 (427)
T ss_pred CCEEEEEEccCCCc----EEEEEECCCCCEEEeecCCCCccce------EECCCCCEEEEEEccCCCceEEEEECCCCC-
Q ss_pred ceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEeEeC
Q 044435 290 SWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 290 ~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~~~~ 342 (378)
...+.. ......+. +.+||..+++..... .++.+|+.+++.+.+...+
T Consensus 276 ----~~~lt~~~~~~~~~~-wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g 327 (427)
T PRK02889 276 ----LRRLTQSSGIDTEPF-FSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG 327 (427)
T ss_pred ----cEECCCCCCCCcCeE-EcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC
No 168
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=39.82 E-value=2.5e+02 Score=25.20 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=45.9
Q ss_pred ECCeEEEEEcCCCcEEEEE-eccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 263 LKGCLSLLCKYSEPWDLWV-MKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 263 ~~G~L~~~~~~~~~l~iW~-l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.+|+|.++.++. .++|=. .|++. +=..+..++- ...-++-++..+|+.++.+....+.+.+||+.+..+-.|
T Consensus 7 ~~Gk~lAi~qd~-~iEiRsa~Ddf~---si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 7 SDGKLLAILQDQ-CIEIRSAKDDFS---SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred CCCcEEEEEecc-EEEEEeccCCch---heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 578887776543 444433 33432 3444555655 444467777778888777777777788888887776665
No 169
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=39.72 E-value=72 Score=18.03 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=26.1
Q ss_pred eEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 291 WSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 291 W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
|+.+..+.. .. ...-+.+.+++..++-...++.+..||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 555566655 22 266788888888777777777788776
No 170
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=39.65 E-value=1.5e+02 Score=27.09 Aligned_cols=82 Identities=12% Similarity=0.246 Sum_probs=43.1
Q ss_pred cceee-CCeEEEEeecCCCccc-ceEEEEEEcC-Cceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEEcCCC-cEEE
Q 044435 206 NGAFV-NGALHWLANQNQDEMI-NDLILAFDLN-IETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE-PWDL 279 (378)
Q Consensus 206 ~~v~~-~G~lyw~~~~~~~~~~-~~~i~~fD~~-~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~-~l~i 279 (378)
++|.. ||.|-+-..-...... ..+++.|... ..+|..- .+|+. .+..+ .+.+. +|+|.|+..++. +.++
T Consensus 125 SGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~----gC~~p-sv~EWe~gkLlM~~~c~~g~rrV 199 (310)
T PF13859_consen 125 SGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPA----GCSDP-SVVEWEDGKLLMMTACDDGRRRV 199 (310)
T ss_dssp E-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----T----T-EEE-EEEEE-TTEEEEEEE-TTS---E
T ss_pred CceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCC----CcceE-EEEeccCCeeEEEEecccceEEE
Confidence 35555 7887776643221222 3577888776 6788654 33332 24556 89999 899999999876 5666
Q ss_pred EEeccCCCCcceEEE
Q 044435 280 WVMKEYGVKDSWSKL 294 (378)
Q Consensus 280 W~l~~~~~~~~W~~~ 294 (378)
..-.| .+.+|+..
T Consensus 200 YeS~D--mG~tWtea 212 (310)
T PF13859_consen 200 YESGD--MGTTWTEA 212 (310)
T ss_dssp EEESS--TTSS-EE-
T ss_pred EEEcc--cceehhhc
Confidence 66555 34689863
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=39.52 E-value=2.4e+02 Score=29.29 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=60.9
Q ss_pred eEEEEEEcCCceee---eecCCCCCCCCCCcccceEEEECCe-EEEEEcCCCcEEEEEeccCC----CCcceEEEEEecC
Q 044435 228 DLILAFDLNIETFY---SMPMPGFGNEGGGGELSGVYVLKGC-LSLLCKYSEPWDLWVMKEYG----VKDSWSKLFTMNE 299 (378)
Q Consensus 228 ~~i~~fD~~~~~~~---~i~lP~~~~~~~~~~~~~l~~~~G~-L~~~~~~~~~l~iW~l~~~~----~~~~W~~~~~i~~ 299 (378)
-....|+....+|. .|..|.+.... ...+...-.. -|+....++.+.||.+.++. ....|.....=..
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~v----at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFV----ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeE----EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 45677888888884 45888765422 1011111122 34444455699999996542 2456987653333
Q ss_pred CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC-CeEEE
Q 044435 300 NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM-HRVES 337 (378)
Q Consensus 300 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~-~~~~~ 337 (378)
........++..||. ++....++.+-.||..+ +....
T Consensus 508 ~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 508 HKTPITALCFSQDGS-LLAVSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred ccCcccchhhcCCCc-EEEEecCCEEEEecCCChhhhhc
Confidence 221244556667887 55555666788999988 44433
No 172
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=38.66 E-value=20 Score=32.79 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhcCC--------ccccceeeecchhhhcccCC
Q 044435 4 WKLPLDVIIDILIRLP--------GKSLLRFRCISKSFRSLIDS 39 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP--------~~sl~r~r~VcK~W~~li~~ 39 (378)
+.||.++|.+|+.|.. -++.+.+..||+.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3699999999999986 23678999999999987543
No 173
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=37.78 E-value=2e+02 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=26.2
Q ss_pred eEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
...+.+.++|.++..+.-.++++.||..+++..
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 556788889986666666778999999988874
No 174
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=37.67 E-value=3.4e+02 Score=25.29 Aligned_cols=137 Identities=9% Similarity=-0.027 Sum_probs=71.4
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNE 251 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~ 251 (378)
...++++..++.|--- . +. ........+...+|.+-..++-.+ .|.+|+..+..-... .-+...-
T Consensus 86 D~AflW~~~~ge~~~e--l---tg--HKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~~~~~~~e~~di- 151 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGE--L---TG--HKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGEQWKLDQEVEDI- 151 (399)
T ss_pred ceEEEEEccCCcceeE--e---cC--CCCceEEEEEccCceEEEecCCCc------cEEEEEcccCceEEEeecccCce-
Confidence 4566777776664321 1 11 111112224455677776666553 688888766433222 2121110
Q ss_pred CCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 252 GGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 252 ~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
. +|--- .+.+.++...++.+=+|...+- .....+.-+.....--.+.++|+.++-...++.+.++|+
T Consensus 152 -----e-Wl~WHp~a~illAG~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 152 -----E-WLKWHPRAHILLAGSTDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred -----E-EEEecccccEEEeecCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 0 22111 4666777766667666766652 112222221111333344567887777777777999999
Q ss_pred CCCeE
Q 044435 331 DMHRV 335 (378)
Q Consensus 331 ~~~~~ 335 (378)
+|.+-
T Consensus 220 ktg~p 224 (399)
T KOG0296|consen 220 KTGQP 224 (399)
T ss_pred CCCce
Confidence 99863
No 175
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.04 E-value=4.8e+02 Score=26.80 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=95.7
Q ss_pred EeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
+.-+.||=.+.......+.+.+-.|++.. +|...... ..... ++..+|. +=+++... +....++|+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~ed-~d~it--a~~l~~d--~~~L~~a~------rs~llrv~~L~ 92 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGSNED-EDEIT--ALALTPD--EEVLVTAS------RSQLLRVWSLP 92 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCCccc-hhhhh--eeeecCC--ccEEEEee------ccceEEEEEcc
Confidence 34456777666655667888888998865 55433221 11223 3333333 22333333 24668888887
Q ss_pred CC----cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee--cCCCCCCCCCCc
Q 044435 182 VN----LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM--PMPGFGNEGGGG 255 (378)
Q Consensus 182 ~~----~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~ 255 (378)
++ +|+.+... |. .. ..+++.-.-++..+.. ..+.+.|..++..+-- ..|..+.
T Consensus 93 tgk~irswKa~He~---Pv--i~-------ma~~~~g~LlAtggaD----~~v~VWdi~~~~~th~fkG~gGvVs----- 151 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEA---PV--IT-------MAFDPTGTLLATGGAD----GRVKVWDIKNGYCTHSFKGHGGVVS----- 151 (775)
T ss_pred cchHhHhHhhccCC---Ce--EE-------EEEcCCCceEEecccc----ceEEEEEeeCCEEEEEecCCCceEE-----
Confidence 74 68876554 43 11 1222222222222221 3688888776655322 3343221
Q ss_pred ccceEEEECC----eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 256 ELSGVYVLKG----CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 256 ~~~~l~~~~G----~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
....++ .|.+.+..+..+.+|-+.+.. . ..+.+.........+++.+|+..++-.+.++-+.+||+.
T Consensus 152 ----sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~---t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 152 ----SLLFHPHWNRWLLASGATDGTVRVWNLNDKR---T--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred ----EEEeCCccchhheeecCCCceEEEEEcccCc---h--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 111111 222333334477778777421 1 111111111235567777788766666666668899985
Q ss_pred CCe
Q 044435 332 MHR 334 (378)
Q Consensus 332 ~~~ 334 (378)
+.+
T Consensus 223 ~~~ 225 (775)
T KOG0319|consen 223 QYK 225 (775)
T ss_pred hhh
Confidence 544
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.63 E-value=3e+02 Score=24.29 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=39.6
Q ss_pred CeEEEEEcCC-CcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Q 044435 265 GCLSLLCKYS-EPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD-MHRVESFL 339 (378)
Q Consensus 265 G~L~~~~~~~-~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~-~~~~~~v~ 339 (378)
.+-+++.... +++-||..+.. .+.|+...-=+.... ..-+.....|.++-+..++.++..+-.. .++|++|.
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e--~e~wk~tll~~f~~~-~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEE--YEPWKKTLLEEFPDV-VWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred CceeeEEecCCCcEEEEEecCc--cCcccccccccCCcc-eEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 3455555544 48899998842 356876431111110 1122333357766666667776655443 45888874
No 177
>PRK05137 tolB translocation protein TolB; Provisional
Probab=35.97 E-value=4e+02 Score=25.51 Aligned_cols=187 Identities=14% Similarity=0.083 Sum_probs=95.1
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
..+++++|.-++.-+.|..... ......+.|.+. +++.+.. . .....+.+++..++..+.+... +
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~-------~v~~p~wSpDG~--~lay~s~-~--~g~~~i~~~dl~~g~~~~l~~~---~ 245 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS-------LVLTPRFSPNRQ--EITYMSY-A--NGRPRVYLLDLETGQRELVGNF---P 245 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC-------CeEeeEECCCCC--EEEEEEe-c--CCCCEEEEEECCCCcEEEeecC---C
Confidence 3478888886665555442211 122344445432 3444332 1 1236788889988887776543 2
Q ss_pred ccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECC-eEEEEEc
Q 044435 196 YSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKG-CLSLLCK 272 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~ 272 (378)
. .. ......-+|. +.+....++. ..|..+|+.+.....+ .-+.... .. ... -+| +|.+...
T Consensus 246 g--~~---~~~~~SPDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~Lt~~~~~~~-----~~-~~s-pDG~~i~f~s~ 309 (435)
T PRK05137 246 G--MT---FAPRFSPDGRKVVMSLSQGGN----TDIYTMDLRSGTTTRLTDSPAIDT-----SP-SYS-PDGSQIVFESD 309 (435)
T ss_pred C--cc---cCcEECCCCCEEEEEEecCCC----ceEEEEECCCCceEEccCCCCccC-----ce-eEc-CCCCEEEEEEC
Confidence 2 11 1112233564 4444332221 3688889988776655 2221111 11 111 245 4555554
Q ss_pred CCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEE
Q 044435 273 YSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESF 338 (378)
Q Consensus 273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v 338 (378)
..+..+||.++-.+ .....+.. .... .....+.++|+.|++.... ..++.+|++++..+.+
T Consensus 310 ~~g~~~Iy~~d~~g--~~~~~lt~-~~~~--~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 310 RSGSPQLYVMNADG--SNPRRISF-GGGR--YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred CCCCCeEEEEECCC--CCeEEeec-CCCc--ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 44466778776432 12222211 1111 1224466788877776532 3589999988877666
No 178
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=35.22 E-value=1.8e+02 Score=25.52 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=53.0
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEE-EecCCCcee
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLF-TMNENGYRV 304 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~ 304 (378)
.-..||+.+++++.+.++...--. . ...-.+|+|..+.+... .+++..-...+....|.... .+... ++
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCS---g--g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~--RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCS---G--GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG--RW 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCccc---C--cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC--Cc
Confidence 577899999999988776433211 0 22234789888887643 45553332222234587653 33331 23
Q ss_pred EE-EEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 305 IP-LAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 305 ~~-~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
++ ...-+||+++++.......+-|-++
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCC
Confidence 33 4445689966666544334444343
No 179
>PTZ00421 coronin; Provisional
Probab=32.91 E-value=4.9e+02 Score=25.64 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=55.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEEC-CeEEEEEcC---CCcEEEEEeccCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLK-GCLSLLCKY---SEPWDLWVMKEYG 286 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~-G~L~~~~~~---~~~l~iW~l~~~~ 286 (378)
+|.+...+..+. .|..+|+.+++... .+..+.... ... .+...+ +.|..+... ++.+.+|-+....
T Consensus 179 dG~lLatgs~Dg------~IrIwD~rsg~~v~-tl~~H~~~~--~~~-~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 179 DGSLLCTTSKDK------KLNIIDPRDGTIVS-SVEAHASAK--SQR-CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCEEEEecCCC------EEEEEECCCCcEEE-EEecCCCCc--ceE-EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 576666555543 78899998765422 122111100 000 111123 334333322 3489999887532
Q ss_pred CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435 287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~~~v 338 (378)
.. ...+.. .........+.+++..+++.. +++.+.+||+.+++....
T Consensus 249 --~p---~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 249 --SP---YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred --Cc---eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 11 111222 111122223445777666665 366688888887775443
No 180
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=32.65 E-value=4e+02 Score=24.52 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=27.8
Q ss_pred eEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeE
Q 044435 304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLV 340 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~ 340 (378)
..-+|++.++.+|.-+..+.+++.|+++.+.++.|.-
T Consensus 190 ~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT 226 (420)
T ss_pred eEEEeecCCceEEEEecCCCcEEEEecCCceeeeecc
Confidence 3347888777655555567789999999999999954
No 181
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=32.28 E-value=1.2e+02 Score=28.51 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 274 SEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 274 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
+.++++|-++-.-. .+++.-...+...++..+||+.|.-...++.+..||+++++-
T Consensus 136 D~TvR~WD~~TeTp------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 136 DTTVRLWDLDTETP------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CceEEeeccCCCCc------ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 34899998764210 011111112244455566777666666677788888777653
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=31.41 E-value=2.6e+02 Score=26.41 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCeEEEEEcCCCcEEEEEeccC-----CC-----CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEY-----GV-----KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~-----~~-----~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~ 332 (378)
+|.|.....+++++-+|+..+- +. ++.|.....+.. .. ...-++-.+++..++...-+..++.+|...
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEecc
Confidence 3455555555558888887721 11 456988776664 22 133445555666566665566688888888
Q ss_pred CeEEEEeE
Q 044435 333 HRVESFLV 340 (378)
Q Consensus 333 ~~~~~v~~ 340 (378)
+++..+..
T Consensus 155 G~l~~~~~ 162 (434)
T KOG1009|consen 155 GQLLAILD 162 (434)
T ss_pred ceeEeecc
Confidence 87777643
No 183
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=30.38 E-value=24 Score=31.17 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHhcCC-ccccceeeecchhhhcccCCh
Q 044435 4 WKLPLDVIIDILIRLP-GKSLLRFRCISKSFRSLIDSK 40 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~~li~~p 40 (378)
.+||.+++.+||.||| -.+|..+..|-..-..++++.
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 3699999999999998 678888887766555555543
No 184
>PF15408 PH_7: Pleckstrin homology domain
Probab=30.18 E-value=11 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=18.8
Q ss_pred cccceeeecchhhhcccCChhHH
Q 044435 21 KSLLRFRCISKSFRSLIDSKDFI 43 (378)
Q Consensus 21 ~sl~r~r~VcK~W~~li~~p~F~ 43 (378)
+.++..+-|||+|-..+.+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 44556677999999999999985
No 185
>PTZ00420 coronin; Provisional
Probab=29.80 E-value=5.9e+02 Score=25.64 Aligned_cols=65 Identities=9% Similarity=0.151 Sum_probs=40.5
Q ss_pred CeEE-EEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 265 GCLS-LLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 265 G~L~-~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
|... +....++.+.||-+.... ....+.... ...-+.++++|.+++..+.++.+..||+++++..
T Consensus 137 g~~iLaSgS~DgtIrIWDl~tg~------~~~~i~~~~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 137 NYYIMCSSGFDSFVNIWDIENEK------RAFQINMPK-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCeEEEEEeCCCeEEEEECCCCc------EEEEEecCC-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 4433 344556699999887521 122232211 1445667788986665666777999999988654
No 186
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=29.59 E-value=5.5e+02 Score=25.15 Aligned_cols=27 Identities=7% Similarity=-0.097 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 312 RGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 312 ~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.|+.||+...++.++++|.+|++...-
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeE
Confidence 356688877778899999999986544
No 187
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.54 E-value=4.9e+02 Score=24.56 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=34.8
Q ss_pred ceEEEEEEcCC--CcEEecCccc-CCCccccccccCCcceeeCC--eEEEEeecCCCcccceEEEEEEcCCc
Q 044435 172 HIEATVYGLKV--NLWRRIKNIK-NFPYSWADHSYGGNGAFVNG--ALHWLANQNQDEMINDLILAFDLNIE 238 (378)
Q Consensus 172 ~~~~~vyss~~--~~W~~~~~~~-~~p~~~~~~~~~~~~v~~~G--~lyw~~~~~~~~~~~~~i~~fD~~~~ 238 (378)
...++|++++. ..|+...... .| +...+.+.....++.| ...+.+...- ..+-.||+..+
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L--~LrVPvW~tdi~Fl~g~~~~~fat~T~~-----hqvR~YDt~~q 236 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRL--GLRVPVWITDIRFLEGSPNYKFATITRY-----HQVRLYDTRHQ 236 (412)
T ss_pred ccceeeeecccceeeeeccCCCCccc--cceeeeeeccceecCCCCCceEEEEecc-----eeEEEecCccc
Confidence 46788888875 4687654430 11 1133445666777888 5555554433 35777777643
No 188
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=29.48 E-value=72 Score=24.64 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.9
Q ss_pred eEEEEECCCCeEEEEeEeC
Q 044435 324 DHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 324 ~~~~ydl~~~~~~~v~~~~ 342 (378)
-++.||..+++|++.+++|
T Consensus 30 ~vY~f~~~~~~W~K~~iEG 48 (122)
T PF06058_consen 30 VVYKFDHETNEWEKTDIEG 48 (122)
T ss_dssp EEEEEETTTTEEEEEEEEE
T ss_pred EEEeecCCCCcEeecCcEe
Confidence 4788889999999999987
No 189
>PRK04922 tolB translocation protein TolB; Provisional
Probab=29.37 E-value=5.1e+02 Score=24.76 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=91.2
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
...++++|..+++...+-..+.. .....+.+.+. . ++.... . .....+.+++..++.-+.+... .
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-------~~~~~~SpDG~-~-l~~~~s-~--~g~~~Iy~~d~~~g~~~~lt~~---~ 291 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-------NGAPSFSPDGR-R-LALTLS-R--DGNPEIYVMDLGSRQLTRLTNH---F 291 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-------ccCceECCCCC-E-EEEEEe-C--CCCceEEEEECCCCCeEECccC---C
Confidence 34688999998887766533311 11233444322 2 222222 1 1235678888888766555322 1
Q ss_pred ccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECC-eEEEEEcC
Q 044435 196 YSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG-CLSLLCKY 273 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G-~L~~~~~~ 273 (378)
. . .......-+|. +++.....+. ..|..+|+.+++...+....... ... ... -+| .|++....
T Consensus 292 ~---~--~~~~~~spDG~~l~f~sd~~g~----~~iy~~dl~~g~~~~lt~~g~~~----~~~-~~S-pDG~~Ia~~~~~ 356 (433)
T PRK04922 292 G---I--DTEPTWAPDGKSIYFTSDRGGR----PQIYRVAASGGSAERLTFQGNYN----ARA-SVS-PDGKKIAMVHGS 356 (433)
T ss_pred C---C--ccceEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEEeecCCCCc----cCE-EEC-CCCCEEEEEECC
Confidence 1 0 01112223454 5555433221 25788888877776663321111 111 222 245 55555544
Q ss_pred CCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEEe
Q 044435 274 SEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 274 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v~ 339 (378)
.+...|+.++-.+ ..... +..... ..-..+++||..|++.... .+++.+|+.++..+.+.
T Consensus 357 ~~~~~I~v~d~~~--g~~~~---Lt~~~~-~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 357 GGQYRIAVMDLST--GSVRT---LTPGSL-DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCceeEEEEECCC--CCeEE---CCCCCC-CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 4444444444221 12221 111101 1123567788876665532 35999999887777664
No 190
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=29.26 E-value=1.7e+02 Score=20.70 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=25.0
Q ss_pred CcEEecCcccCCCccccccccCCcceeeCCeEEEEeec
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQ 220 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~ 220 (378)
|.|-+.+.. |+..........||+.||.+--...+
T Consensus 4 G~WvE~~va---~Ya~e~~~l~~~GV~~ngrlV~T~F~ 38 (79)
T PF11012_consen 4 GTWVEQGVA---PYAAEEFTLNESGVFRNGRLVATSFE 38 (79)
T ss_pred eEEEECCCC---CccccEEEECCCcEEECCCEEeeEEE
Confidence 679998887 76323345567799999998766644
No 191
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=29.25 E-value=87 Score=20.88 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=14.4
Q ss_pred eEEEEECCCCeEEEEe
Q 044435 324 DHCWYHLDMHRVESFL 339 (378)
Q Consensus 324 ~~~~ydl~~~~~~~v~ 339 (378)
++|.||.++++++-++
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 6999999999998775
No 192
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=28.43 E-value=3.7e+02 Score=24.43 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEE--eCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFS--SRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~--~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
+|...+..+.+..+-+|...++. +.-|++.. . -..+++++ .|+..|+-+..++.+..+|.++++-.
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkg----H--sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDC-ENFWVLKG----H--SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred CCCeEeecCCcceEEEEeccccc-cceeeecc----c--cceeEeeeeccCCCEEEEecCCceEEEEecccceee
Confidence 67777766666688899865543 34577652 1 12234443 47775666666777999999998844
No 193
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=28.02 E-value=1.9e+02 Score=28.23 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCC-C
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGV-K 288 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~-~ 288 (378)
+|++...+..++ +|-..|..+..-...-.=..+........ .+..+ +|+..+....++.+.+|-|..... -
T Consensus 328 dg~~iAagc~DG------SIQ~W~~~~~~v~p~~~vk~AH~~g~~It-si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 328 DGKLIAAGCLDG------SIQIWDKGSRTVRPVMKVKDAHLPGQDIT-SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred CcchhhhcccCC------ceeeeecCCcccccceEeeeccCCCCcee-EEEeccccchhhhccCCCceeeeeccccccch
Q ss_pred cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCe-EEEEeEeC-CcceEEeeeccccCCCC
Q 044435 289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHR-VESFLVKG-PSDVHVCVDTLVSPFAE 359 (378)
Q Consensus 289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~-~~~v~~~~-~~~~~~y~~slv~~~~~ 359 (378)
..|+-+...-. .. .|+.++.++|+-+.. ...++.||..|-. +.+|.+.+ ...-+...|-|-+|..+
T Consensus 401 ~~~tgL~t~~~~td-----c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTD-----CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred hhhcCCCccCCCCc-----cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Q ss_pred Chhhhh
Q 044435 360 SNRSLK 365 (378)
Q Consensus 360 ~~~~~~ 365 (378)
-..+..
T Consensus 476 sgdG~~ 481 (641)
T KOG0772|consen 476 SGDGTA 481 (641)
T ss_pred cCCCce
No 194
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=27.73 E-value=4.8e+02 Score=23.90 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=56.8
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCC-------C-CCcccceEEEE-CCe-EEEEEcCC----C-
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNE-------G-GGGELSGVYVL-KGC-LSLLCKYS----E- 275 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~-------~-~~~~~~~l~~~-~G~-L~~~~~~~----~- 275 (378)
+|.+||-.+..........|..||.....-..+++|..... . ....+..|+.. +|+ |+++.... +
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 55555554444111123489999988444466677775411 1 11122245554 565 77776542 1
Q ss_pred -c-------EEEEEeccCCCCcceEE-EEEecC-C----CceeEEEEEEeCCCEEEEEe
Q 044435 276 -P-------WDLWVMKEYGVKDSWSK-LFTMNE-N----GYRVIPLAFSSRGDKVLFQK 320 (378)
Q Consensus 276 -~-------l~iW~l~~~~~~~~W~~-~~~i~~-~----~~~~~~~~~~~~g~~v~~~~ 320 (378)
. ++|+..+....+..|.. .+.++. . .....-+...+++.++++.-
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 2 67777775422222433 355553 1 12244455566777666654
No 195
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.57 E-value=2.6e+02 Score=20.73 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=29.3
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
.+++..+|.+++|...- . ....+.+..|+..+.|.++...
T Consensus 9 a~v~~~~~~~~~W~~~~--~------~~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 9 AQVYTADPSTGKWVPAS--G------GTGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEEECCCCCceEECC--C------CeEEEEEEEECCCCEEEEEEEe
Confidence 35788899999997542 1 3346678888888888887764
No 196
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=27.29 E-value=5.1e+02 Score=24.09 Aligned_cols=194 Identities=10% Similarity=0.010 Sum_probs=95.6
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC--CCcceEEEEEEcCCC--cEEe-cCccc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--PVYHIEATVYGLKVN--LWRR-IKNIK 192 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--~~~~~~~~vyss~~~--~W~~-~~~~~ 192 (378)
+++|.+.-+++.. -..+.. ....+...+..+.+.+.--+.... ..+...+++|+..+- .++. ++.-
T Consensus 18 rv~viD~d~~k~l--Gmi~~g------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k- 88 (342)
T PF06433_consen 18 RVYVIDADSGKLL--GMIDTG------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK- 88 (342)
T ss_dssp EEEEEETTTTEEE--EEEEEE------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred eEEEEECCCCcEE--EEeecc------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-
Confidence 5677777776643 222221 122345556666666655443222 445678999999985 4443 2322
Q ss_pred CCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEE
Q 044435 193 NFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLC 271 (378)
Q Consensus 193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 271 (378)
|............+.-+|+.-.+...... .+|-+.|+...++ ..|+.|..... .-.-++++.+++
T Consensus 89 --~R~~~~~~~~~~~ls~dgk~~~V~N~TPa----~SVtVVDl~~~kvv~ei~~PGC~~i--------yP~~~~~F~~lC 154 (342)
T PF06433_consen 89 --PRAQVVPYKNMFALSADGKFLYVQNFTPA----TSVTVVDLAAKKVVGEIDTPGCWLI--------YPSGNRGFSMLC 154 (342)
T ss_dssp ---B--BS--GGGEEE-TTSSEEEEEEESSS----EEEEEEETTTTEEEEEEEGTSEEEE--------EEEETTEEEEEE
T ss_pred --chheecccccceEEccCCcEEEEEccCCC----CeEEEEECCCCceeeeecCCCEEEE--------EecCCCceEEEe
Confidence 12001111222245557774444333222 4899999999888 45699865431 111234444444
Q ss_pred cCCCcEEEEEeccCCCCcceEEEEEecC--CC-ceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 272 KYSEPWDLWVMKEYGVKDSWSKLFTMNE--NG-YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 272 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~-~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.+. .+.--.|++.+. .. .+...+-. .. .+..+.... .++..+|....+.++..|+.....+..
T Consensus 155 ~DG-sl~~v~Ld~~Gk-~~-~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 155 GDG-SLLTVTLDADGK-EA-QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFG 220 (342)
T ss_dssp TTS-CEEEEEETSTSS-EE-EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEE
T ss_pred cCC-ceEEEEECCCCC-Ee-EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccccc
Confidence 332 333335665443 22 33223322 22 223333332 344466666777788888888775555
No 197
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=26.61 E-value=1.7e+02 Score=18.22 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
...+...+..|+|.+...++++..|.+..+
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 445667788898888888888999988443
No 198
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.46 E-value=4.5e+02 Score=23.13 Aligned_cols=95 Identities=7% Similarity=0.072 Sum_probs=53.9
Q ss_pred eEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435 228 DLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL 307 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 307 (378)
..+-++|.....+.+|+.=..... .+ .-....+...+....+++++.+-+..... ..+.-......+
T Consensus 123 ~s~r~wDCRS~s~ePiQildea~D----~V-~Si~v~~heIvaGS~DGtvRtydiR~G~l--------~sDy~g~pit~v 189 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILDEAKD----GV-SSIDVAEHEIVAGSVDGTVRTYDIRKGTL--------SSDYFGHPITSV 189 (307)
T ss_pred ceeEEEEcccCCCCccchhhhhcC----ce-eEEEecccEEEeeccCCcEEEEEeeccee--------ehhhcCCcceeE
Confidence 479999999999998865444332 12 22345677777776666666655543110 011100124456
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 308 AFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
.+.++|...+...-+..+-..|-+|+++
T Consensus 190 s~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 190 SFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred EecCCCCEEEEeeccceeeecccchhHH
Confidence 6677777666555444455666665554
No 199
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=26.33 E-value=2.3e+02 Score=24.71 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=37.6
Q ss_pred eccceEEEeecCCcEEEEcCcccceeec--CCCCCCCCCCCCceeEEeeecCCCCeEEEE
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVL--PKFYRDLHGDKPSLHGFGYDVGSDDYKLVR 162 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~L--P~~~~~~~~~~~~~~~~g~d~~~~~ykvv~ 162 (378)
..+|.|.-.....++|-.||.|+.-..+ .+..... .-..++|-|+|.-+..+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al---~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL---SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccc---cCceEEEecCcccCcEEEEc
Confidence 3567766556778899999999997666 3222222 11256788888888888775
No 200
>PRK00178 tolB translocation protein TolB; Provisional
Probab=26.30 E-value=5.7e+02 Score=24.28 Aligned_cols=145 Identities=13% Similarity=0.068 Sum_probs=76.2
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN 250 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 250 (378)
...+.+++..++.-+.+... +. .. ......-+|. +++.....+. ..|..+|+.+++...+--.....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~---~g--~~---~~~~~SpDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNF---EG--LN---GAPAWSPDGSKLAFVLSKDGN----PEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred CCEEEEEECCCCCEEEccCC---CC--Cc---CCeEECCCCCEEEEEEccCCC----ceEEEEECCCCCeEEcccCCCCc
Confidence 35678888888876665433 21 10 0111223554 4444433221 36889999988776652111111
Q ss_pred CCCCcccceEEEECC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEE
Q 044435 251 EGGGGELSGVYVLKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHC 326 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~ 326 (378)
... .. .-+| +|++.....+...||.++-.+ ..+..+.. .... .....+.++|+.|++.... ..++
T Consensus 290 ----~~~-~~-spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~lt~-~~~~--~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 290 ----TEP-FW-GKDGRTLYFTSDRGGKPQIYKVNVNG--GRAERVTF-VGNY--NARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ----CCe-EE-CCCCCEEEEEECCCCCceEEEEECCC--CCEEEeec-CCCC--ccceEECCCCCEEEEEEccCCceEEE
Confidence 111 11 1245 566655444456677766322 23433321 1111 2234566788877776543 2589
Q ss_pred EEECCCCeEEEEe
Q 044435 327 WYHLDMHRVESFL 339 (378)
Q Consensus 327 ~ydl~~~~~~~v~ 339 (378)
.+|+++++.+.+.
T Consensus 359 ~~dl~tg~~~~lt 371 (430)
T PRK00178 359 AQDLQRGSVRILT 371 (430)
T ss_pred EEECCCCCEEEcc
Confidence 9999999988874
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=25.75 E-value=4.7e+02 Score=23.12 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=58.9
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
|.+...+++ ..+...|++++++++.--- +- .+- ...+. +|. .+....+++++||.++...
T Consensus 127 nSi~~AgGD-------~~~y~~dlE~G~i~r~~rG-Ht----DYv--H~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k-- 189 (325)
T KOG0649|consen 127 NSILFAGGD-------GVIYQVDLEDGRIQREYRG-HT----DYV--HSVVGRNANGQ-ILSGAEDGTVRVWDTKTQK-- 189 (325)
T ss_pred CcEEEecCC-------eEEEEEEecCCEEEEEEcC-Cc----cee--eeeeecccCcc-eeecCCCccEEEEeccccc--
Confidence 666666644 3799999999999865111 11 111 11222 233 2333344599999887522
Q ss_pred cceEEEEEecC----CC----ceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE-eEeC
Q 044435 289 DSWSKLFTMNE----NG----YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF-LVKG 342 (378)
Q Consensus 289 ~~W~~~~~i~~----~~----~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v-~~~~ 342 (378)
.+..|.. +. ....+.+++-+.+ -+++....++-.+++++.+-..+ .|.+
T Consensus 190 ----~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 190 ----HVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred ----eeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCCceeEEeccCCCceEEEeccc
Confidence 1222322 11 1122344554666 55565566688888888776555 4443
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=25.56 E-value=6e+02 Score=24.28 Aligned_cols=140 Identities=13% Similarity=0.125 Sum_probs=72.9
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN 250 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 250 (378)
...+.+++..++.-+.+... +. .. ......-||. |.+....++ . ..|..+|+.++....+.- ...
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~---~g--~~---~~~~wSPDG~~La~~~~~~g-~---~~Iy~~d~~~~~~~~lt~--~~~ 292 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASF---RG--HN---GAPAFSPDGSRLAFASSKDG-V---LNIYVMGANGGTPSQLTS--GAG 292 (429)
T ss_pred CcEEEEEeCCCCceEEEecC---CC--cc---CceeECCCCCEEEEEEecCC-c---EEEEEEECCCCCeEeecc--CCC
Confidence 34577778777665554332 21 11 1112223564 444433222 1 257788887776655421 111
Q ss_pred CCCCcccceEEEECCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 251 EGGGGELSGVYVLKGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
.. ... . -..+|+ |+++....+..+||.++..+.. .. .+.... ....+.++|+.|++...+ .++.+|
T Consensus 293 ~~--~~~-~-wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~--~l~~~~---~~~~~SpDG~~ia~~~~~-~i~~~D 359 (429)
T PRK01742 293 NN--TEP-S-WSPDGQSILFTSDRSGSPQVYRMSASGGG---AS--LVGGRG---YSAQISADGKTLVMINGD-NVVKQD 359 (429)
T ss_pred Cc--CCE-E-ECCCCCEEEEEECCCCCceEEEEECCCCC---eE--EecCCC---CCccCCCCCCEEEEEcCC-CEEEEE
Confidence 10 111 1 112564 5655545558899998764321 11 122211 123456788877776554 488899
Q ss_pred CCCCeEEEE
Q 044435 330 LDMHRVESF 338 (378)
Q Consensus 330 l~~~~~~~v 338 (378)
+.+++++.+
T Consensus 360 l~~g~~~~l 368 (429)
T PRK01742 360 LTSGSTEVL 368 (429)
T ss_pred CCCCCeEEe
Confidence 999988766
No 203
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.20 E-value=5.2e+02 Score=23.42 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=46.0
Q ss_pred eEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCe--EEEEECCCCeEE
Q 044435 259 GVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKD--HCWYHLDMHRVE 336 (378)
Q Consensus 259 ~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~ydl~~~~~~ 336 (378)
.+...+|+|.+... ..+.++.++... .+......+... .+..+...++.|++.+-... ++.|+.+.+++.
T Consensus 93 ai~~~~~~lv~~~g--~~l~v~~l~~~~---~l~~~~~~~~~~---~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 93 AICSFNGRLVVAVG--NKLYVYDLDNSK---TLLKKAFYDSPF---YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp EEEEETTEEEEEET--TEEEEEEEETTS---SEEEEEEE-BSS---SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred EhhhhCCEEEEeec--CEEEEEEccCcc---cchhhheecceE---EEEEEeccccEEEEEEcccCEEEEEEEccCCEEE
Confidence 56777888666553 488899998732 487777776522 12333333666777765554 556687777788
Q ss_pred EEeE
Q 044435 337 SFLV 340 (378)
Q Consensus 337 ~v~~ 340 (378)
.+.-
T Consensus 165 ~va~ 168 (321)
T PF03178_consen 165 LVAR 168 (321)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7753
No 204
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=25.12 E-value=3.1e+02 Score=20.91 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=54.0
Q ss_pred CcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEE-EcCCceeeee--cCC
Q 044435 170 VYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAF-DLNIETFYSM--PMP 246 (378)
Q Consensus 170 ~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~f-D~~~~~~~~i--~lP 246 (378)
.....+-.|+.++.+|+.+..+ .. .........=+..+|+|-.+............|.++ |.++++|+.. .+|
T Consensus 17 ~~~~~IvsFDv~~E~f~~i~~P---~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp 92 (129)
T PF08268_consen 17 SDNNVIVSFDVRSEKFRFIKLP---ED-PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLP 92 (129)
T ss_pred CCCcEEEEEEcCCceEEEEEee---ee-eccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECC
Confidence 3456788899999999887542 01 011222333467899999887665432111345555 6778899865 566
Q ss_pred CCCCCCCC-cccceEEE-ECCeEEEE
Q 044435 247 GFGNEGGG-GELSGVYV-LKGCLSLL 270 (378)
Q Consensus 247 ~~~~~~~~-~~~~~l~~-~~G~L~~~ 270 (378)
........ ......+. .+|.+.++
T Consensus 93 ~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 93 PSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred hHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 54322110 11112233 35777766
No 205
>PLN02772 guanylate kinase
Probab=24.19 E-value=4.6e+02 Score=25.01 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=36.0
Q ss_pred cceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee-CCeEEEEeecCCCcccceEEEEEEcCC
Q 044435 171 YHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV-NGALHWLANQNQDEMINDLILAFDLNI 237 (378)
Q Consensus 171 ~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~ 237 (378)
....+++|+..++.|......-.-|. .+..++++.+ ++.|+.+....... ..|.-+.++|
T Consensus 49 ~~~~v~i~D~~t~~W~~P~V~G~~P~----~r~GhSa~v~~~~rilv~~~~~~~~---~~~w~l~~~t 109 (398)
T PLN02772 49 LSIGVQILDKITNNWVSPIVLGTGPK----PCKGYSAVVLNKDRILVIKKGSAPD---DSIWFLEVDT 109 (398)
T ss_pred ccceEEEEECCCCcEecccccCCCCC----CCCcceEEEECCceEEEEeCCCCCc---cceEEEEcCC
Confidence 56789999999999987653200022 2334445555 68888888654322 3444444444
No 206
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.45 E-value=3.3e+02 Score=26.66 Aligned_cols=101 Identities=8% Similarity=0.071 Sum_probs=54.3
Q ss_pred EEEEEEcCCc-eeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 229 LILAFDLNIE-TFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~-~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.|-++|+... .-..+ .|+.--..+ +...-....+|+-.++++...++.||-|..--.. .+..++-...-++-
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdn--yiRSckL~pdgrtLivGGeastlsiWDLAapTpr----ikaeltssapaCyA 514 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDN--YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR----IKAELTSSAPACYA 514 (705)
T ss_pred eEEEeeccCCCCCCccccccccCccc--ceeeeEecCCCceEEeccccceeeeeeccCCCcc----hhhhcCCcchhhhh
Confidence 6888887643 22222 454432222 2210223347776666665559999998752110 11111110112445
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
+++.+|.++.|-++.++.+.+||+..+.+
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEccccee
Confidence 66677777666666677788888876653
No 207
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=23.37 E-value=2e+02 Score=21.54 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.0
Q ss_pred CcEEEEcCcccc-eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 117 KGIILLNPLTKK-HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 117 ~~~~V~NP~t~~-~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
.+++..||.+++ |... . ....+.+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~---~------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV---K------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES---S------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC---C------eEEEEEEEEECCCCEEEEEEEE
Confidence 457888999988 9865 1 2345567777777777776654
No 208
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=22.79 E-value=9.4e+02 Score=25.56 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=59.3
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee----cCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEE
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWV 281 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~ 281 (378)
++.+++. |++.+... ..|.+|...+.+...| -+|.. .+++. +|+..++...+..+.+=.
T Consensus 61 ~ia~~s~-~f~~~s~~-----~tv~~y~fps~~~~~iL~Rftlp~r----------~~~v~g~g~~iaagsdD~~vK~~~ 124 (933)
T KOG1274|consen 61 SIACYSN-HFLTGSEQ-----NTVLRYKFPSGEEDTILARFTLPIR----------DLAVSGSGKMIAAGSDDTAVKLLN 124 (933)
T ss_pred EEeeccc-ceEEeecc-----ceEEEeeCCCCCccceeeeeeccce----------EEEEecCCcEEEeecCceeEEEEe
Confidence 4444555 44444433 3688887777666543 33322 34444 566777666666776666
Q ss_pred eccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 282 MKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 282 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
+++.... ++ -..... ...-+-++++|+++.....+++|.+||+.++.+.+
T Consensus 125 ~~D~s~~----~~-lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~ 174 (933)
T KOG1274|consen 125 LDDSSQE----KV-LRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK 174 (933)
T ss_pred ccccchh----ee-ecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh
Confidence 6664321 11 011100 12234455677766666667778888887766543
No 209
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.31 E-value=4e+02 Score=24.02 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=41.8
Q ss_pred cceEEEEEEcCCCcEEecCcccCCCccc--cccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecC
Q 044435 171 YHIEATVYGLKVNLWRRIKNIKNFPYSW--ADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPM 245 (378)
Q Consensus 171 ~~~~~~vyss~~~~W~~~~~~~~~p~~~--~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l 245 (378)
.+..+.+|+..+.+|.....- -.+- ........-+++.|.+-.-+.. ...+..||..+.+|+.+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~------~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTN------SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCC------ceeEEEEecCCCeeeecCC
Confidence 578899999999999987543 1100 0111223455555655543321 2489999999999987733
No 210
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=21.46 E-value=1.9e+02 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=20.9
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 314 DKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 314 ~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
..+++....+.+|+||.+++.+-.|.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 45666667778999999999988884
No 211
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.38 E-value=5.3e+02 Score=22.14 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=43.2
Q ss_pred EEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-------C--ceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 261 YVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-------G--YRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 261 ~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-------~--~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
...+|...++....+.+.+|-+..-. -....+.-.++ . . ....-+.+.++|..|+.- .+++.|.||.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k--~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGK--AVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCe--eccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecc
Confidence 44556555555555688999887521 11111110111 1 0 112334555678754444 4456999999
Q ss_pred CCCeEEEEeE
Q 044435 331 DMHRVESFLV 340 (378)
Q Consensus 331 ~~~~~~~v~~ 340 (378)
+-+.|.+|..
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 9999999953
No 212
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=21.16 E-value=9.8e+02 Score=25.18 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=20.9
Q ss_pred cceEEEeecCCcEEEEcCcccc--eeecCCCC
Q 044435 107 NGLLALKNYPKGIILLNPLTKK--HRVLPKFY 136 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~--~~~LP~~~ 136 (378)
+|.|.+.+....++-+|+.|++ |+.-|..+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCC
Confidence 7777777666778888999977 44444433
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=20.26 E-value=3.1e+02 Score=27.06 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=40.7
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEeccC-----C-CCcceEEEEEec
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKEY-----G-VKDSWSKLFTMN 298 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~~-----~-~~~~W~~~~~i~ 298 (378)
.+-+||..+++..-+ +. ..+.. .|.++ ||+..++.+.++-+.||.+.+- + ...+|+-.-..|
T Consensus 313 fLRvF~fdt~eLlg~-----mk--SYFGG-LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 313 FLRIFDFDTQELLGV-----MK--SYFGG-LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eEEEeeccHHHHHHH-----HH--hhccc-eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 788888887765432 11 11222 34443 8998888888889999999864 2 246798876666
Done!