Query 044435
Match_columns 378
No_of_seqs 147 out of 1554
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 05:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2woz_A Kelch repeat and BTB do 99.5 1.9E-12 6.6E-17 117.8 24.7 195 119-338 80-293 (318)
2 4asc_A Kelch repeat and BTB do 99.5 1.6E-12 5.4E-17 118.2 22.7 195 119-338 69-283 (315)
3 3ii7_A Kelch-like protein 7; p 99.5 4.3E-12 1.5E-16 114.7 24.7 210 104-339 52-279 (306)
4 2xn4_A Kelch-like protein 2; s 99.5 5.1E-12 1.7E-16 114.1 24.3 209 104-339 58-283 (302)
5 1zgk_A Kelch-like ECH-associat 99.5 3.5E-12 1.2E-16 115.6 22.8 195 117-339 90-294 (308)
6 2vpj_A Kelch-like protein 12; 99.5 8.5E-12 2.9E-16 112.5 23.6 208 104-339 59-285 (301)
7 2vpj_A Kelch-like protein 12; 99.4 7.3E-11 2.5E-15 106.3 23.1 195 117-339 31-238 (301)
8 4asc_A Kelch repeat and BTB do 99.4 6.4E-11 2.2E-15 107.5 22.7 199 117-339 13-228 (315)
9 3ii7_A Kelch-like protein 7; p 99.4 6.6E-11 2.3E-15 106.9 21.6 196 116-339 23-232 (306)
10 2xn4_A Kelch-like protein 2; s 99.3 1.1E-10 3.8E-15 105.2 21.1 195 117-339 30-236 (302)
11 1zgk_A Kelch-like ECH-associat 99.3 3.1E-11 1.1E-15 109.3 16.9 198 116-339 38-247 (308)
12 2uvk_A YJHT; unknown function, 99.3 2.7E-11 9.1E-16 112.0 16.1 236 106-360 18-326 (357)
13 2woz_A Kelch repeat and BTB do 99.3 2.2E-10 7.4E-15 104.2 19.5 198 118-339 25-238 (318)
14 2zwa_A Leucine carboxyl methyl 99.1 3.7E-09 1.3E-13 106.3 20.1 214 106-340 396-643 (695)
15 2uvk_A YJHT; unknown function, 99.1 9.2E-09 3.1E-13 94.8 20.3 201 117-339 86-349 (357)
16 3v7d_B Cell division control p 99.0 4.2E-07 1.4E-11 86.4 28.9 294 5-336 17-345 (464)
17 2ovr_B FBW7, F-BOX/WD repeat p 99.0 4.1E-07 1.4E-11 86.1 26.9 282 4-335 20-311 (445)
18 2e31_A FBS1, F-box only protei 99.0 1.7E-10 6E-15 101.8 2.5 47 4-50 52-99 (297)
19 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.4E-10 4.8E-15 75.4 1.4 39 4-42 10-48 (53)
20 1k3i_A Galactose oxidase precu 98.8 4.6E-08 1.6E-12 97.8 14.8 200 118-339 220-504 (656)
21 1p22_A F-BOX/WD-repeat protein 98.8 1E-06 3.5E-11 83.2 21.2 283 5-336 13-329 (435)
22 2zwa_A Leucine carboxyl methyl 98.6 7.7E-07 2.6E-11 89.4 16.7 177 170-359 409-616 (695)
23 1k3i_A Galactose oxidase precu 98.5 1.2E-06 4.1E-11 87.5 13.5 193 119-338 168-384 (656)
24 3l2o_B F-box only protein 4; s 97.7 1.1E-05 3.8E-10 70.4 1.5 47 5-51 7-53 (312)
25 2ast_B S-phase kinase-associat 97.0 9.2E-05 3.1E-09 67.1 0.0 38 4-41 10-47 (336)
26 3ei3_B DNA damage-binding prot 96.9 0.23 8E-06 44.9 22.1 194 109-335 88-285 (383)
27 3dsm_A Uncharacterized protein 96.8 0.2 6.9E-06 44.7 20.4 196 107-340 2-221 (328)
28 3jrp_A Fusion protein of prote 96.8 0.27 9.1E-06 44.0 21.0 192 110-333 26-241 (379)
29 3jrp_A Fusion protein of prote 96.3 0.25 8.5E-06 44.2 17.7 205 109-339 71-295 (379)
30 3jro_A Fusion protein of prote 96.3 0.42 1.4E-05 48.1 20.8 188 114-333 28-239 (753)
31 2p1m_B Transport inhibitor res 96.3 0.00066 2.3E-08 66.5 -0.1 33 4-36 7-40 (594)
32 1gxr_A ESG1, transducin-like e 96.2 0.56 1.9E-05 41.0 23.3 199 102-338 57-261 (337)
33 3ogk_B Coronatine-insensitive 96.2 0.00071 2.4E-08 66.3 -0.2 34 3-36 13-47 (592)
34 1k8k_C P40, ARP2/3 complex 41 96.0 0.57 1.9E-05 41.8 18.5 192 114-336 27-237 (372)
35 4aez_A CDC20, WD repeat-contai 96.0 0.87 3E-05 41.5 20.5 195 103-337 99-298 (401)
36 3q7m_A Lipoprotein YFGL, BAMB; 96.0 0.88 3E-05 41.1 20.5 197 102-338 98-302 (376)
37 3mbr_X Glutamine cyclotransfer 95.9 0.24 8.1E-06 42.3 14.2 113 208-340 27-142 (243)
38 1q7f_A NHL, brain tumor CG1071 95.8 0.82 2.8E-05 39.3 22.1 201 105-340 38-246 (286)
39 1l0q_A Surface layer protein; 95.7 1.2 4E-05 40.2 19.7 191 102-337 37-238 (391)
40 1r5m_A SIR4-interacting protei 95.6 1 3.5E-05 40.8 18.5 192 105-332 215-425 (425)
41 3bws_A Protein LP49; two-domai 95.6 1.4 4.7E-05 40.3 20.6 195 105-338 178-396 (433)
42 4e54_B DNA damage-binding prot 95.5 0.34 1.2E-05 45.0 15.1 197 107-335 131-330 (435)
43 3mkq_A Coatomer beta'-subunit; 95.4 2.5 8.6E-05 42.3 23.3 192 105-337 64-264 (814)
44 4gqb_B Methylosome protein 50; 95.4 1.4 4.8E-05 39.5 18.2 198 105-338 91-295 (344)
45 3nol_A Glutamine cyclotransfer 95.3 0.22 7.6E-06 42.9 11.9 112 209-340 50-164 (262)
46 3dwl_C Actin-related protein 2 95.3 0.34 1.2E-05 43.6 14.0 189 115-335 31-239 (377)
47 1gxr_A ESG1, transducin-like e 95.2 1.4 4.8E-05 38.3 22.0 191 105-338 106-302 (337)
48 4ery_A WD repeat-containing pr 95.1 1.6 5.3E-05 38.0 23.5 186 113-338 41-229 (312)
49 3ow8_A WD repeat-containing pr 95.1 1.7 5.7E-05 38.4 22.4 192 107-337 91-284 (321)
50 4aow_A Guanine nucleotide-bind 95.1 1.6 5.5E-05 38.1 20.6 108 211-334 226-339 (340)
51 3u4y_A Uncharacterized protein 95.0 1.6 5.6E-05 38.1 22.1 192 107-335 9-210 (331)
52 1rwi_B Serine/threonine-protei 94.8 1.6 5.5E-05 36.9 20.5 187 105-334 75-266 (270)
53 3vgz_A Uncharacterized protein 94.7 2.1 7.3E-05 37.6 26.0 204 103-338 96-309 (353)
54 3vl1_A 26S proteasome regulato 94.6 2.6 8.9E-05 38.2 24.1 194 106-339 107-331 (420)
55 1l0q_A Surface layer protein; 94.5 2.6 8.9E-05 37.8 21.8 189 105-338 82-281 (391)
56 1yfq_A Cell cycle arrest prote 94.4 2.4 8.1E-05 37.1 21.2 195 109-337 71-287 (342)
57 3hfq_A Uncharacterized protein 94.4 2.6 8.7E-05 37.3 17.7 148 172-338 17-178 (347)
58 2iwa_A Glutamine cyclotransfer 94.3 0.79 2.7E-05 39.6 12.8 110 212-339 32-143 (266)
59 3dsm_A Uncharacterized protein 94.2 2.7 9.4E-05 37.1 22.4 192 106-336 52-257 (328)
60 4a11_B DNA excision repair pro 94.1 3.1 0.00011 37.3 20.0 112 211-335 256-368 (408)
61 2ovr_B FBW7, F-BOX/WD repeat p 94.0 3.6 0.00012 37.8 22.7 112 207-337 284-396 (445)
62 1k8k_C P40, ARP2/3 complex 41 93.9 2.7 9.3E-05 37.2 16.5 139 172-331 29-172 (372)
63 3hfq_A Uncharacterized protein 93.9 3.1 0.00011 36.7 23.0 171 146-340 143-327 (347)
64 3nok_A Glutaminyl cyclase; bet 93.9 0.61 2.1E-05 40.3 11.1 108 210-340 63-173 (268)
65 3fm0_A Protein CIAO1; WDR39,SG 93.8 3.4 0.00012 36.6 19.6 183 114-330 35-223 (345)
66 2aq5_A Coronin-1A; WD40 repeat 93.7 3.8 0.00013 37.0 21.4 203 107-339 93-308 (402)
67 4g56_B MGC81050 protein; prote 93.6 3.9 0.00013 36.6 19.8 190 104-333 147-344 (357)
68 3u4y_A Uncharacterized protein 93.5 3.6 0.00012 35.9 17.0 199 105-339 48-259 (331)
69 4gga_A P55CDC, cell division c 93.3 4.7 0.00016 36.8 20.3 199 105-338 114-316 (420)
70 1vyh_C Platelet-activating fac 93.3 4.7 0.00016 36.8 20.9 195 106-335 160-372 (410)
71 3k26_A Polycomb protein EED; W 93.2 4.1 0.00014 35.8 17.8 198 109-334 87-320 (366)
72 3mkq_A Coatomer beta'-subunit; 93.2 6.8 0.00023 39.1 19.5 185 112-336 30-221 (814)
73 3iz6_a 40S ribosomal protein R 93.1 4.7 0.00016 36.3 21.9 195 110-334 173-377 (380)
74 3scy_A Hypothetical bacterial 93.1 4.5 0.00015 35.9 18.9 114 211-339 221-346 (361)
75 1got_B GT-beta; complex (GTP-b 93.0 4.5 0.00015 35.7 22.5 95 229-335 165-260 (340)
76 1rwi_B Serine/threonine-protei 92.9 3.7 0.00013 34.5 19.0 193 102-338 29-228 (270)
77 3no2_A Uncharacterized protein 92.9 4.2 0.00014 35.0 16.6 189 110-335 8-198 (276)
78 4a11_B DNA excision repair pro 92.9 5 0.00017 35.8 19.5 196 114-335 63-279 (408)
79 2z2n_A Virginiamycin B lyase; 92.8 4.1 0.00014 34.7 20.5 192 102-336 104-299 (299)
80 3scy_A Hypothetical bacterial 92.8 5 0.00017 35.6 20.6 199 119-339 31-249 (361)
81 1ri6_A Putative isomerase YBHE 92.6 4.7 0.00016 35.0 19.2 143 173-337 60-216 (343)
82 2pbi_B Guanine nucleotide-bind 92.6 5.3 0.00018 35.6 20.6 182 110-329 169-354 (354)
83 3i2n_A WD repeat-containing pr 92.6 5 0.00017 35.1 19.2 193 109-333 131-354 (357)
84 3bg1_A Protein SEC13 homolog; 92.5 5.1 0.00017 35.0 19.1 72 266-339 229-301 (316)
85 2pm9_A Protein WEB1, protein t 92.4 2.6 8.8E-05 38.1 13.9 202 108-333 178-415 (416)
86 3zwl_B Eukaryotic translation 92.4 5.3 0.00018 35.0 21.4 70 264-338 186-255 (369)
87 2ojh_A Uncharacterized protein 92.2 4.6 0.00016 34.0 20.7 204 102-339 47-265 (297)
88 2ynn_A Coatomer subunit beta'; 92.1 5.4 0.00019 34.5 22.2 193 106-338 65-265 (304)
89 1p22_A F-BOX/WD-repeat protein 92.0 7.2 0.00025 35.7 19.8 183 107-334 183-367 (435)
90 1pby_B Quinohemoprotein amine 91.9 5.7 0.0002 34.3 16.6 93 229-336 220-314 (337)
91 2hqs_A Protein TOLB; TOLB, PAL 91.9 7.4 0.00025 35.6 19.2 186 117-338 159-350 (415)
92 3odt_A Protein DOA1; ubiquitin 91.6 5.8 0.0002 33.9 21.0 189 105-337 27-219 (313)
93 2aq5_A Coronin-1A; WD40 repeat 91.6 7.4 0.00025 35.1 19.2 191 115-334 55-256 (402)
94 1sq9_A Antiviral protein SKI8; 91.6 7.2 0.00025 34.8 18.1 115 211-334 244-397 (397)
95 1erj_A Transcriptional repress 91.5 7.6 0.00026 35.0 22.8 202 105-336 132-345 (393)
96 2pm9_A Protein WEB1, protein t 91.5 7.2 0.00024 35.0 15.9 198 109-334 128-339 (416)
97 3q7m_A Lipoprotein YFGL, BAMB; 91.4 7.5 0.00026 34.7 19.7 197 106-338 52-264 (376)
98 3bws_A Protein LP49; two-domai 91.3 8.3 0.00028 35.0 21.8 186 109-332 225-432 (433)
99 4g56_B MGC81050 protein; prote 91.3 7.7 0.00026 34.6 18.9 197 105-338 103-307 (357)
100 3fvz_A Peptidyl-glycine alpha- 91.2 7.3 0.00025 34.2 19.2 200 106-331 100-321 (329)
101 3dwl_C Actin-related protein 2 91.1 0.82 2.8E-05 41.0 8.9 139 173-332 33-177 (377)
102 3bg1_A Protein SEC13 homolog; 91.1 7.2 0.00025 34.0 16.5 64 266-332 180-247 (316)
103 3k26_A Polycomb protein EED; W 91.1 7.3 0.00025 34.1 20.7 66 265-332 299-366 (366)
104 1pgu_A Actin interacting prote 90.8 11 0.00039 35.8 18.8 69 264-338 171-244 (615)
105 3g4e_A Regucalcin; six bladed 90.7 7.7 0.00026 33.5 24.0 199 105-340 22-238 (297)
106 3sfz_A APAF-1, apoptotic pepti 90.6 3.5 0.00012 43.7 14.4 185 109-335 975-1161(1249)
107 2dg1_A DRP35, lactonase; beta 90.5 8.2 0.00028 33.6 22.6 208 105-340 53-271 (333)
108 2pm7_B Protein transport prote 90.2 8.3 0.00028 33.1 19.8 113 212-338 170-292 (297)
109 4ery_A WD repeat-containing pr 90.2 8.4 0.00029 33.2 20.4 191 106-337 75-273 (312)
110 3sfz_A APAF-1, apoptotic pepti 90.1 19 0.00065 38.0 19.6 199 105-336 666-875 (1249)
111 3dm0_A Maltose-binding peripla 89.8 16 0.00055 35.8 20.5 180 115-331 492-692 (694)
112 1got_B GT-beta; complex (GTP-b 89.6 10 0.00035 33.3 22.1 182 107-329 154-340 (340)
113 2pm7_B Protein transport prote 89.5 9.4 0.00032 32.8 20.9 66 265-333 170-239 (297)
114 3odt_A Protein DOA1; ubiquitin 89.4 9.2 0.00031 32.5 18.7 95 229-338 206-302 (313)
115 2bkl_A Prolyl endopeptidase; m 89.3 18 0.0006 35.6 20.9 192 118-339 203-404 (695)
116 3f3f_A Nucleoporin SEH1; struc 88.9 11 0.00036 32.5 15.3 112 211-334 22-145 (351)
117 3iz6_a 40S ribosomal protein R 88.8 13 0.00043 33.4 18.8 101 229-338 181-286 (380)
118 3sjl_D Methylamine dehydrogena 88.8 4 0.00014 37.3 11.4 111 210-336 236-367 (386)
119 1r5m_A SIR4-interacting protei 88.8 13 0.00043 33.3 22.5 97 229-338 228-325 (425)
120 1yr2_A Prolyl oligopeptidase; 88.7 19 0.00064 35.8 17.4 115 210-338 326-447 (741)
121 3g4e_A Regucalcin; six bladed 88.5 11 0.00039 32.4 14.3 106 211-338 24-144 (297)
122 1pjx_A Dfpase, DIISOPROPYLFLUO 88.4 11 0.00038 32.2 20.6 197 115-339 44-264 (314)
123 3v7d_B Cell division control p 88.0 16 0.00054 33.5 26.1 199 105-336 171-385 (464)
124 1ri6_A Putative isomerase YBHE 88.0 12 0.00042 32.2 22.4 102 229-338 152-270 (343)
125 3jro_A Fusion protein of prote 88.0 10 0.00035 37.8 14.9 107 211-333 20-133 (753)
126 3ow8_A WD repeat-containing pr 87.9 13 0.00044 32.4 21.6 107 211-337 133-242 (321)
127 3i2n_A WD repeat-containing pr 87.9 13 0.00044 32.3 20.9 109 210-333 178-292 (357)
128 2hqs_A Protein TOLB; TOLB, PAL 87.6 16 0.00056 33.2 19.3 184 117-339 203-394 (415)
129 3fm0_A Protein CIAO1; WDR39,SG 87.4 14 0.0005 32.4 20.8 197 107-333 72-284 (345)
130 3e5z_A Putative gluconolactona 87.3 13 0.00044 31.7 21.3 198 109-340 42-254 (296)
131 3lrv_A PRE-mRNA-splicing facto 87.3 14 0.00049 32.3 19.6 204 101-337 88-299 (343)
132 3vl1_A 26S proteasome regulato 87.3 12 0.00041 33.7 13.9 110 211-338 108-218 (420)
133 3v9f_A Two-component system se 87.2 26 0.00088 35.0 20.3 198 107-339 417-618 (781)
134 1vyh_C Platelet-activating fac 86.7 18 0.00062 32.8 22.4 189 107-336 119-331 (410)
135 3mmy_A MRNA export factor; mRN 86.7 15 0.00052 31.9 18.7 199 105-338 95-310 (368)
136 2vdu_B TRNA (guanine-N(7)-)-me 86.4 20 0.00067 32.9 23.8 65 265-336 210-275 (450)
137 3o4h_A Acylamino-acid-releasin 86.4 16 0.00056 34.8 14.9 187 107-338 122-320 (582)
138 1erj_A Transcriptional repress 86.3 18 0.00062 32.4 21.0 103 211-333 176-288 (393)
139 3hrp_A Uncharacterized protein 86.3 20 0.00067 32.8 22.6 200 105-339 139-361 (409)
140 4aez_A CDC20, WD repeat-contai 86.1 19 0.00064 32.4 22.8 186 107-338 145-342 (401)
141 2p4o_A Hypothetical protein; p 85.9 16 0.00056 31.5 14.0 105 211-334 42-149 (306)
142 1jmx_B Amine dehydrogenase; ox 85.7 6.2 0.00021 34.4 10.8 108 209-334 8-136 (349)
143 2dg1_A DRP35, lactonase; beta 85.6 11 0.00039 32.7 12.4 111 211-338 55-177 (333)
144 2z3z_A Dipeptidyl aminopeptida 85.5 28 0.00097 33.9 21.3 154 171-338 233-397 (706)
145 3v65_B Low-density lipoprotein 85.5 21 0.00071 32.3 21.2 191 107-338 87-283 (386)
146 3nol_A Glutamine cyclotransfer 85.2 17 0.00058 31.1 15.5 139 172-340 64-210 (262)
147 2xyi_A Probable histone-bindin 85.0 23 0.00077 32.3 16.9 200 109-336 196-414 (430)
148 1q7f_A NHL, brain tumor CG1071 84.8 17 0.00058 30.7 25.1 189 105-332 86-280 (286)
149 1nir_A Nitrite reductase; hemo 84.7 28 0.00096 33.1 20.7 196 107-338 148-361 (543)
150 4gqb_B Methylosome protein 50; 84.6 21 0.00071 31.6 21.5 191 105-335 136-334 (344)
151 1n7d_A LDL receptor, low-densi 84.2 8.9 0.0003 38.1 12.0 115 207-338 500-620 (699)
152 3lrv_A PRE-mRNA-splicing facto 84.2 17 0.00058 31.8 13.0 106 211-334 138-246 (343)
153 3e5z_A Putative gluconolactona 83.9 12 0.00041 31.9 11.6 108 211-338 38-167 (296)
154 3v65_B Low-density lipoprotein 83.6 25 0.00086 31.7 21.1 209 104-353 124-342 (386)
155 4ggc_A P55CDC, cell division c 83.5 20 0.00068 30.5 21.2 67 105-184 34-100 (318)
156 2mad_H Methylamine dehydrogena 83.4 19 0.00066 32.4 13.2 69 264-338 278-356 (373)
157 2z2n_A Virginiamycin B lyase; 83.3 19 0.00066 30.2 20.6 195 102-339 20-219 (299)
158 4h5i_A Guanine nucleotide-exch 83.3 24 0.00083 31.3 19.5 196 104-333 141-344 (365)
159 1pgu_A Actin interacting prote 82.8 33 0.0011 32.5 20.8 105 211-333 499-615 (615)
160 3azo_A Aminopeptidase; POP fam 82.6 36 0.0012 32.9 20.1 195 117-339 161-376 (662)
161 3hrp_A Uncharacterized protein 82.5 18 0.00061 33.1 12.7 110 210-338 140-255 (409)
162 3m0c_C LDL receptor, low-densi 81.8 46 0.0016 33.5 24.4 173 148-353 475-656 (791)
163 3dm0_A Maltose-binding peripla 81.1 43 0.0015 32.7 20.8 95 229-337 542-637 (694)
164 3mbr_X Glutamine cyclotransfer 80.4 25 0.00086 29.6 18.5 156 146-338 23-185 (243)
165 1nir_A Nitrite reductase; hemo 80.4 31 0.001 32.9 13.9 109 210-338 147-263 (543)
166 1npe_A Nidogen, entactin; glyc 80.0 25 0.00087 29.4 24.7 197 102-339 42-246 (267)
167 2fp8_A Strictosidine synthase; 79.3 22 0.00074 30.9 11.7 116 211-338 29-180 (322)
168 3v64_C Agrin; beta propeller, 79.3 34 0.0011 30.4 21.4 190 107-338 44-240 (349)
169 3frx_A Guanine nucleotide-bind 79.2 30 0.001 29.8 21.7 195 103-335 72-270 (319)
170 3mmy_A MRNA export factor; mRN 79.2 16 0.00056 31.7 11.0 70 265-338 54-123 (368)
171 1pby_B Quinohemoprotein amine 79.2 29 0.001 29.6 14.3 99 229-338 12-130 (337)
172 1yfq_A Cell cycle arrest prote 78.9 30 0.001 29.7 17.6 182 110-333 26-226 (342)
173 2ad6_A Methanol dehydrogenase 78.8 32 0.0011 33.0 13.5 119 205-338 56-191 (571)
174 1ijq_A LDL receptor, low-densi 78.6 33 0.0011 29.9 21.3 182 116-338 9-201 (316)
175 2ghs_A AGR_C_1268P; regucalcin 78.1 34 0.0012 29.8 14.9 105 211-338 60-174 (326)
176 2z3z_A Dipeptidyl aminopeptida 77.9 53 0.0018 31.9 24.5 192 117-338 235-441 (706)
177 4aow_A Guanine nucleotide-bind 77.5 33 0.0011 29.3 18.4 98 229-337 151-251 (340)
178 3vgz_A Uncharacterized protein 77.5 34 0.0012 29.5 26.0 189 116-338 68-268 (353)
179 3frx_A Guanine nucleotide-bind 76.9 36 0.0012 29.4 18.9 107 211-336 118-231 (319)
180 3v64_C Agrin; beta propeller, 76.4 41 0.0014 29.8 22.7 210 103-353 80-299 (349)
181 3gre_A Serine/threonine-protei 76.3 34 0.0011 30.9 12.5 110 212-338 182-298 (437)
182 2qc5_A Streptogramin B lactona 76.0 34 0.0012 28.7 20.9 194 102-338 25-223 (300)
183 2xzm_R RACK1; ribosome, transl 75.9 30 0.001 30.2 11.7 73 264-336 38-111 (343)
184 4e54_B DNA damage-binding prot 75.3 35 0.0012 31.0 12.4 101 229-338 143-246 (435)
185 3dr2_A Exported gluconolactona 75.1 17 0.00057 31.4 9.6 109 211-339 55-185 (305)
186 1qks_A Cytochrome CD1 nitrite 75.1 60 0.0021 31.1 20.8 195 107-338 166-379 (567)
187 2hes_X YDR267CP; beta-propelle 74.9 41 0.0014 29.1 20.6 70 259-332 255-328 (330)
188 3c75_H MADH, methylamine dehyd 74.6 35 0.0012 31.4 11.9 68 264-337 330-407 (426)
189 1sq9_A Antiviral protein SKI8; 74.3 45 0.0016 29.3 20.2 71 259-336 191-271 (397)
190 3tc9_A Hypothetical hydrolase; 74.1 49 0.0017 30.3 13.0 113 206-338 140-263 (430)
191 3v9f_A Two-component system se 72.5 80 0.0027 31.4 23.2 200 105-339 371-575 (781)
192 2oaj_A Protein SNI1; WD40 repe 72.3 68 0.0023 32.7 14.6 96 229-338 40-135 (902)
193 1flg_A Protein (quinoprotein e 72.3 71 0.0024 30.7 14.6 123 205-338 62-199 (582)
194 3f3f_A Nucleoporin SEH1; struc 72.2 44 0.0015 28.3 25.0 117 212-339 182-345 (351)
195 1kb0_A Quinohemoprotein alcoho 71.9 24 0.00082 34.7 10.8 120 205-338 71-205 (677)
196 1npe_A Nidogen, entactin; glyc 71.7 43 0.0015 27.9 17.8 160 147-338 39-204 (267)
197 1kv9_A Type II quinohemoprotei 71.5 45 0.0015 32.7 12.6 120 205-338 60-193 (668)
198 2pbi_B Guanine nucleotide-bind 71.4 53 0.0018 28.8 21.2 107 211-335 209-318 (354)
199 2oiz_A Aromatic amine dehydrog 70.4 46 0.0016 29.5 11.6 68 264-339 265-341 (361)
200 2ynn_A Coatomer subunit beta'; 70.2 50 0.0017 28.1 20.4 97 229-336 120-221 (304)
201 1w6s_A Methanol dehydrogenase 70.1 38 0.0013 32.8 11.5 31 205-242 56-90 (599)
202 4a2l_A BT_4663, two-component 69.7 93 0.0032 31.0 24.7 201 107-335 320-529 (795)
203 3ei3_B DNA damage-binding prot 69.6 58 0.002 28.6 20.0 156 146-332 76-236 (383)
204 1yiq_A Quinohemoprotein alcoho 69.4 90 0.0031 30.7 16.0 59 174-242 81-147 (689)
205 1evh_A WH1 domain, protein (ME 69.0 11 0.00038 27.6 5.7 41 118-164 12-52 (112)
206 1yiq_A Quinohemoprotein alcoho 68.9 40 0.0014 33.2 11.6 120 205-338 64-198 (689)
207 3nok_A Glutaminyl cyclase; bet 68.6 56 0.0019 28.0 15.5 110 208-340 102-219 (268)
208 2p9w_A MAL S 1 allergenic prot 68.0 52 0.0018 29.2 10.9 174 148-333 17-216 (334)
209 4h5i_A Guanine nucleotide-exch 67.5 66 0.0022 28.4 17.4 175 102-298 182-359 (365)
210 2hes_X YDR267CP; beta-propelle 66.8 63 0.0021 27.9 21.7 117 211-339 164-287 (330)
211 1jof_A Carboxy-CIS,CIS-muconat 66.7 67 0.0023 28.2 13.1 116 211-338 155-298 (365)
212 2ecf_A Dipeptidyl peptidase IV 66.6 1E+02 0.0034 30.1 19.1 192 118-338 264-465 (741)
213 2qc5_A Streptogramin B lactona 66.2 57 0.0019 27.2 22.6 196 102-340 67-267 (300)
214 1n7d_A LDL receptor, low-densi 66.2 1.1E+02 0.0036 30.3 14.4 62 205-277 542-607 (699)
215 1jmx_B Amine dehydrogenase; ox 66.0 63 0.0021 27.6 21.7 30 307-338 260-290 (349)
216 4gq1_A NUP37; propeller, trans 65.9 73 0.0025 28.4 13.3 67 264-336 155-222 (393)
217 3p5b_L Low density lipoprotein 65.9 77 0.0026 28.6 22.7 174 146-353 161-344 (400)
218 2ojh_A Uncharacterized protein 65.6 56 0.0019 26.9 17.4 186 116-338 21-212 (297)
219 2hz6_A Endoplasmic reticulum t 65.1 37 0.0013 30.3 9.9 25 106-130 8-32 (369)
220 2ymu_A WD-40 repeat protein; u 64.7 92 0.0031 29.1 23.6 108 211-338 396-504 (577)
221 2qe8_A Uncharacterized protein 64.7 72 0.0025 27.8 14.1 75 207-283 71-153 (343)
222 1pjx_A Dfpase, DIISOPROPYLFLUO 64.6 43 0.0015 28.4 9.9 112 211-338 28-167 (314)
223 3m0c_C LDL receptor, low-densi 64.0 1.2E+02 0.0042 30.3 20.7 114 207-338 475-595 (791)
224 3p5b_L Low density lipoprotein 63.8 85 0.0029 28.3 20.1 184 116-339 91-284 (400)
225 2hz6_A Endoplasmic reticulum t 63.7 1.9 6.4E-05 39.1 0.7 28 206-240 4-31 (369)
226 3zwl_B Eukaryotic translation 62.2 75 0.0026 27.2 21.9 196 107-337 85-309 (369)
227 3vu4_A KMHSV2; beta-propeller 62.0 82 0.0028 27.6 19.6 65 264-334 206-273 (355)
228 1egx_A VAsp, vasodilator-stimu 60.4 16 0.00056 26.8 5.2 43 118-165 12-54 (115)
229 3fvz_A Peptidyl-glycine alpha- 60.1 84 0.0029 27.1 21.4 193 118-338 70-283 (329)
230 2xyi_A Probable histone-bindin 60.1 71 0.0024 28.8 11.0 69 264-333 192-264 (430)
231 3sov_A LRP-6, low-density lipo 59.4 89 0.003 27.2 13.4 60 211-283 46-109 (318)
232 1qks_A Cytochrome CD1 nitrite 58.8 1.3E+02 0.0044 28.8 13.5 108 211-338 166-281 (567)
233 4ggc_A P55CDC, cell division c 58.6 81 0.0028 26.4 19.2 137 173-334 45-183 (318)
234 2fp8_A Strictosidine synthase; 57.3 92 0.0032 26.7 13.8 54 228-284 260-313 (322)
235 1kb0_A Quinohemoprotein alcoho 55.2 1.6E+02 0.0055 28.8 20.3 122 106-243 76-207 (677)
236 1kv9_A Type II quinohemoprotei 54.7 1.6E+02 0.0055 28.7 15.0 60 173-242 76-143 (668)
237 1nr0_A Actin interacting prote 54.6 1.5E+02 0.0051 28.3 20.8 97 229-337 171-275 (611)
238 3sov_A LRP-6, low-density lipo 54.6 1.1E+02 0.0037 26.6 22.6 207 106-353 45-262 (318)
239 3iuj_A Prolyl endopeptidase; h 53.7 1.7E+02 0.0057 28.6 18.4 115 210-339 290-412 (693)
240 1ijq_A LDL receptor, low-densi 53.0 1.1E+02 0.0038 26.3 23.8 211 103-353 37-262 (316)
241 3dr2_A Exported gluconolactona 52.7 1.1E+02 0.0037 26.0 18.1 195 110-340 59-275 (305)
242 3gre_A Serine/threonine-protei 52.5 71 0.0024 28.6 9.6 68 264-337 181-250 (437)
243 3dw8_B Serine/threonine-protei 52.2 1.3E+02 0.0044 26.8 20.1 118 213-339 240-380 (447)
244 1ddw_A GLGF-domain protein hom 51.9 29 0.001 25.6 5.4 40 117-164 11-51 (120)
245 2vdu_B TRNA (guanine-N(7)-)-me 51.7 1.4E+02 0.0047 27.0 23.7 118 211-338 251-399 (450)
246 2iwa_A Glutamine cyclotransfer 51.5 1.1E+02 0.0038 25.9 20.1 158 146-339 23-189 (266)
247 3dw8_B Serine/threonine-protei 50.7 1.4E+02 0.0046 26.6 19.9 111 211-332 188-315 (447)
248 4a0p_A LRP6, LRP-6, low-densit 48.6 2E+02 0.0067 27.9 21.9 124 116-273 14-143 (628)
249 2oaj_A Protein SNI1; WD40 repe 48.5 2.3E+02 0.0079 28.7 24.3 187 111-337 33-247 (902)
250 2p4o_A Hypothetical protein; p 48.3 1.3E+02 0.0043 25.6 22.6 201 106-338 41-247 (306)
251 4hw6_A Hypothetical protein, I 47.7 1.7E+02 0.0057 26.8 14.2 112 205-335 141-262 (433)
252 1w6s_A Methanol dehydrogenase 47.2 2E+02 0.0069 27.6 20.6 125 107-243 62-199 (599)
253 2ghs_A AGR_C_1268P; regucalcin 47.1 1.4E+02 0.0047 25.7 23.5 203 104-340 57-268 (326)
254 2ymu_A WD-40 repeat protein; u 45.7 1.9E+02 0.0064 26.8 23.1 108 211-338 314-422 (577)
255 2xzm_R RACK1; ribosome, transl 45.7 1.5E+02 0.005 25.6 20.4 93 229-335 195-288 (343)
256 1mda_H Methylamine dehydrogena 45.2 71 0.0024 28.7 8.1 45 291-337 304-351 (368)
257 4gga_A P55CDC, cell division c 44.7 1.7E+02 0.0058 26.0 17.2 137 173-334 125-263 (420)
258 1k32_A Tricorn protease; prote 44.3 2.8E+02 0.0097 28.5 19.0 97 229-338 359-467 (1045)
259 2j04_A TAU60, YPL007P, hypothe 43.2 2.3E+02 0.008 27.2 12.9 70 264-335 140-214 (588)
260 3hxj_A Pyrrolo-quinoline quino 42.7 89 0.0031 26.5 8.3 21 105-128 68-88 (330)
261 2oit_A Nucleoporin 214KDA; NH2 41.6 1.5E+02 0.0052 26.9 10.0 68 265-338 162-229 (434)
262 3pe7_A Oligogalacturonate lyas 41.5 1.8E+02 0.006 25.3 15.7 98 228-338 168-279 (388)
263 3tc9_A Hypothetical hydrolase; 40.9 2.1E+02 0.0071 26.0 16.1 151 102-283 143-300 (430)
264 2w18_A PALB2, fancn, partner a 39.6 76 0.0026 28.4 7.1 92 228-330 260-355 (356)
265 2be1_A Serine/threonine-protei 39.4 99 0.0034 27.4 7.9 26 313-338 111-136 (339)
266 4a2l_A BT_4663, two-component 38.9 3E+02 0.01 27.2 26.5 214 102-339 220-443 (795)
267 1i2h_A PSD-ZIP45(homer-1C/VESL 38.5 52 0.0018 25.9 5.2 39 118-164 17-56 (168)
268 3no2_A Uncharacterized protein 38.2 1.8E+02 0.0061 24.4 20.5 111 207-334 131-255 (276)
269 3s94_A LRP-6, low-density lipo 36.6 3E+02 0.01 26.5 19.9 190 110-338 11-208 (619)
270 3s94_A LRP-6, low-density lipo 32.7 3.4E+02 0.012 26.1 21.9 159 145-338 350-516 (619)
271 1z68_A Fibroblast activation p 31.7 3.6E+02 0.012 26.0 14.5 201 118-338 225-449 (719)
272 2w18_A PALB2, fancn, partner a 31.0 2.9E+02 0.0098 24.6 15.4 74 259-338 185-275 (356)
273 2ecf_A Dipeptidyl peptidase IV 30.2 3.8E+02 0.013 25.8 21.7 102 228-338 312-421 (741)
274 2dk7_A Transcription elongatio 29.7 56 0.0019 21.6 3.4 23 314-336 21-43 (73)
275 3ukx_C Bimax2 peptide; arm rep 29.4 15 0.00051 18.4 0.4 9 369-377 4-12 (28)
276 3pe7_A Oligogalacturonate lyas 29.4 2.8E+02 0.0094 23.9 16.9 213 105-339 89-336 (388)
277 3iuj_A Prolyl endopeptidase; h 29.0 4E+02 0.014 25.7 13.9 100 229-340 260-367 (693)
278 2ece_A 462AA long hypothetical 28.2 3.6E+02 0.012 25.0 13.1 118 211-339 148-296 (462)
279 3q6k_A 43.2 kDa salivary prote 27.1 2.4E+02 0.0083 25.4 8.4 24 228-251 123-149 (381)
280 2be1_A Serine/threonine-protei 26.8 1.9E+02 0.0064 25.6 7.5 112 107-242 10-135 (339)
281 2jp2_A Spred-2, sprouty-relate 26.8 94 0.0032 23.1 4.7 40 118-164 21-65 (126)
282 2lyd_A Decapping protein 1; DC 25.7 58 0.002 24.5 3.3 27 316-342 31-57 (134)
283 1flg_A Protein (quinoprotein e 24.6 4.6E+02 0.016 24.9 17.6 80 173-273 466-548 (582)
284 1mda_H Methylamine dehydrogena 23.8 1.8E+02 0.006 26.0 6.9 69 265-340 32-114 (368)
285 2kwv_A RAD30 homolog B, DNA po 22.9 36 0.0012 20.2 1.3 17 5-21 23-39 (48)
286 1nr0_A Actin interacting prote 22.0 5E+02 0.017 24.4 23.1 191 114-338 167-361 (611)
287 1q67_A Decapping protein invol 22.0 72 0.0025 26.0 3.3 27 316-342 37-63 (231)
288 2ece_A 462AA long hypothetical 21.6 4.8E+02 0.017 24.1 19.1 54 264-320 331-399 (462)
289 3b7f_A Glycosyl hydrolase, BNR 20.9 4.3E+02 0.015 23.2 11.3 149 174-338 32-214 (394)
290 3syx_A Sprouty-related, EVH1 d 20.8 1.7E+02 0.006 21.8 5.0 39 118-164 19-63 (130)
No 1
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.55 E-value=1.9e-12 Score=117.79 Aligned_cols=195 Identities=17% Similarity=0.221 Sum_probs=131.4
Q ss_pred EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccc
Q 044435 119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSW 198 (378)
Q Consensus 119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~ 198 (378)
+.++||.|++|..+|++|.++.. . +.... .+...|++............+++|++.+++|+.++.+ |.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~---~--~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~-- 147 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCL---F--GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL---PI-- 147 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCS---C--EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC---SS--
T ss_pred EEEEeCCCCcEEECCCCCccccc---c--ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC---CC--
Confidence 78999999999999988865432 1 11111 2334444433212334456899999999999999877 54
Q ss_pred cccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC--
Q 044435 199 ADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-- 275 (378)
Q Consensus 199 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-- 275 (378)
. ......+.++|+||.+++..........+.+||+.+++|+.+ ++|.... .. .++..+|+|+++.+...
T Consensus 148 ~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG~~~~~ 219 (318)
T 2woz_A 148 K--VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-----MF-GVAIHKGKIVIAGGVTEDG 219 (318)
T ss_dssp C--EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SC-EEEEETTEEEEEEEEETTE
T ss_pred c--ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-----cc-eEEEECCEEEEEcCcCCCC
Confidence 2 344557889999999998643322335799999999999998 5554322 22 56778999999987543
Q ss_pred -cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC--------------CCeEEEEECCCCeEEEE
Q 044435 276 -PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN--------------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 276 -~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~--------------~~~~~~ydl~~~~~~~v 338 (378)
.-.+|.++.. ..+|+.+..++. +. ...+++. ++.++++... ...++.||+++++|+++
T Consensus 220 ~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 220 LSASVEAFDLK--TNKWEVMTEFPQERS--SISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEEEEETT--TCCEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ccceEEEEECC--CCeEEECCCCCCccc--ceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 3567777753 357999876665 33 2222332 5554444321 13499999999999999
No 2
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.53 E-value=1.6e-12 Score=118.20 Aligned_cols=195 Identities=13% Similarity=0.150 Sum_probs=132.8
Q ss_pred EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEe-cCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435 119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF-KSPVYHIEATVYGLKVNLWRRIKNIKNFPYS 197 (378)
Q Consensus 119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~ 197 (378)
+.++||.|++|..+|++|.++.. . +... ..+...|++.... ........+++|+..+++|+.++.+ |.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~----~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~- 137 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCL----F-GLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL---PY- 137 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEES----C-EEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC---SS-
T ss_pred eEEecCCCCeEEECCCCCcchhc----e-eEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC---CC-
Confidence 78999999999999988865421 1 1111 1233333333321 2234556899999999999999877 54
Q ss_pred ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC-
Q 044435 198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE- 275 (378)
Q Consensus 198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~- 275 (378)
.......+.++|+||.+++..........+.+||+.+++|+.+ ++|... ... ..+..+|+|+++.+...
T Consensus 138 ---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~~~ 208 (315)
T 4asc_A 138 ---VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR-----SLF-GATVHDGRIIVAAGVTDT 208 (315)
T ss_dssp ---CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC-----BSC-EEEEETTEEEEEEEECSS
T ss_pred ---cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch-----hce-EEEEECCEEEEEeccCCC
Confidence 2345567889999999998743333346799999999999998 566432 223 56778999999998654
Q ss_pred --cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC--------------CeEEEEECCCCeEEEE
Q 044435 276 --PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS--------------KDHCWYHLDMHRVESF 338 (378)
Q Consensus 276 --~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~--------------~~~~~ydl~~~~~~~v 338 (378)
.-.+|.++.. ...|+.+..++. +. ...+++. ++.++++.... ..++.||+++++|+.+
T Consensus 209 ~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 209 GLTSSAEVYSIT--DNKWAPFEAFPQERS--SLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp SEEEEEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CccceEEEEECC--CCeEEECCCCCCccc--ceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 4477888763 357999876655 33 1222222 55555554321 2489999999999999
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.52 E-value=4.3e-12 Score=114.73 Aligned_cols=210 Identities=9% Similarity=-0.035 Sum_probs=137.5
Q ss_pred eeccceEEEee-----cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEE
Q 044435 104 GSCNGLLALKN-----YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVY 178 (378)
Q Consensus 104 ~s~~GLl~l~~-----~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vy 178 (378)
...+|.|.+.. ....+.++||.|++|..++++|.++.. ..+..+ .+...|++... ........+++|
T Consensus 52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~-~~~~~~~~~~~~ 123 (306)
T 3ii7_A 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS----LAACAA---EGKIYTSGGSE-VGNSALYLFECY 123 (306)
T ss_dssp EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS----CEEEEE---TTEEEEECCBB-TTBSCCCCEEEE
T ss_pred EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc----eeEEEE---CCEEEEECCCC-CCCcEeeeEEEE
Confidence 34466655443 235688999999999999988765422 111222 22333333221 133345679999
Q ss_pred EcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCccc---ceEEEEEEcCCceeeee-cCCCCCCCCCC
Q 044435 179 GLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMI---NDLILAFDLNIETFYSM-PMPGFGNEGGG 254 (378)
Q Consensus 179 ss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~ 254 (378)
++.+++|+.++.+ |. .......+.++|++|.+++....... ...+.+||+.+++|+.+ ++|....
T Consensus 124 d~~~~~W~~~~~~---p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---- 192 (306)
T 3ii7_A 124 DTRTESWHTKPSM---LT----QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK---- 192 (306)
T ss_dssp ETTTTEEEEECCC---SS----CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB----
T ss_pred eCCCCceEeCCCC---cC----CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh----
Confidence 9999999999877 54 23455678899999999976432211 35799999999999999 5554322
Q ss_pred cccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeE
Q 044435 255 GELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDH 325 (378)
Q Consensus 255 ~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~ 325 (378)
.. .++..+|+|+++.+... .-.+|.++.. ..+|+.+..++. +. ...+++. ++.++++...+ ..+
T Consensus 193 -~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~~ 265 (306)
T 3ii7_A 193 -NH-GLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNEWKMVSPMPWKGV--TVKCAAV-GSIVYVLAGFQGVGRLGHI 265 (306)
T ss_dssp -SC-EEEEETTEEEEECCEETTEEBCCEEEEETT--TTEEEECCCCSCCBS--CCEEEEE-TTEEEEEECBCSSSBCCEE
T ss_pred -cc-eEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCcEEECCCCCCCcc--ceeEEEE-CCEEEEEeCcCCCeeeeeE
Confidence 23 56778999999987543 3456777753 357998876655 33 1222222 56645554321 359
Q ss_pred EEEECCCCeEEEEe
Q 044435 326 CWYHLDMHRVESFL 339 (378)
Q Consensus 326 ~~ydl~~~~~~~v~ 339 (378)
..||+++++|+.+.
T Consensus 266 ~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 266 LEYNTETDKWVANS 279 (306)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcCCCCeEEeCC
Confidence 99999999999995
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.51 E-value=5.1e-12 Score=114.06 Aligned_cols=209 Identities=11% Similarity=0.081 Sum_probs=137.9
Q ss_pred eeccceEEEee------cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEE
Q 044435 104 GSCNGLLALKN------YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATV 177 (378)
Q Consensus 104 ~s~~GLl~l~~------~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~v 177 (378)
...+|.|.+.. ....+.++||.|++|..+|++|.++.. ..+..+ .+...|++.. ........+++
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~--~~~~~~~~~~~ 128 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST----LGAAVL---NGLLYAVGGF--DGSTGLSSVEA 128 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS----CEEEEE---TTEEEEEEEE--CSSCEEEEEEE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc----eEEEEE---CCEEEEEcCC--CCCccCceEEE
Confidence 34466665543 134689999999999999988765422 111112 2333344333 33334568999
Q ss_pred EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc-ccceEEEEEEcCCceeeee-cCCCCCCCCCCc
Q 044435 178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE-MINDLILAFDLNIETFYSM-PMPGFGNEGGGG 255 (378)
Q Consensus 178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~ 255 (378)
|++.+++|+.++.+ |. .......+.++|+||.+++..... .....+..||+.+++|+.+ ++|....
T Consensus 129 ~d~~~~~W~~~~~~---p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----- 196 (302)
T 2xn4_A 129 YNIKSNEWFHVAPM---NT----RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS----- 196 (302)
T ss_dssp EETTTTEEEEECCC---SS----CCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----
T ss_pred EeCCCCeEeecCCC---CC----cccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-----
Confidence 99999999999877 54 234455788999999999764322 1135799999999999998 5554322
Q ss_pred ccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEE
Q 044435 256 ELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHC 326 (378)
Q Consensus 256 ~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~ 326 (378)
.. .++..+|+|+++.+... .-++|.++.. ...|+.+..++. +. ...+++. ++.++++...+ ..+.
T Consensus 197 ~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~v~ 270 (302)
T 2xn4_A 197 GA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPT--TNAWRQVADMNMCRR--NAGVCAV-NGLLYVVGGDDGSCNLASVE 270 (302)
T ss_dssp SC-EEEEETTEEEEECCBSSSSBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBCCCEE
T ss_pred cc-cEEEECCEEEEECCCCCCcccceEEEEeCC--CCCEeeCCCCCCccc--cCeEEEE-CCEEEEECCcCCCcccccEE
Confidence 23 56778999999987654 3467777753 357998876655 33 2222332 56544444322 2499
Q ss_pred EEECCCCeEEEEe
Q 044435 327 WYHLDMHRVESFL 339 (378)
Q Consensus 327 ~ydl~~~~~~~v~ 339 (378)
.||+++++|+.+.
T Consensus 271 ~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 271 YYNPTTDKWTVVS 283 (302)
T ss_dssp EEETTTTEEEECS
T ss_pred EEcCCCCeEEECC
Confidence 9999999999984
No 5
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.51 E-value=3.5e-12 Score=115.56 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=130.3
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..+.++||.|++|..++++|.++.. .....+ .+...|++.. ........+++|++.+++|+.++.+ |.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~--~~~~~~~~~~~yd~~~~~W~~~~~~---p~ 157 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNR----IGVGVI---DGHIYAVGGS--HGCIHHNSVERYEPERDEWHLVAPM---LT 157 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBT----CEEEEE---TTEEEEECCE--ETTEECCCEEEEETTTTEEEECCCC---SS
T ss_pred ceEEEECCCCCeEeECCCCCcCccc----cEEEEE---CCEEEEEcCC--CCCcccccEEEECCCCCeEeECCCC---Cc
Confidence 4689999999999999988765421 111122 2333333322 2223345799999999999999877 54
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE 275 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~ 275 (378)
.......+.++|+||.+++..... ....+..||+.+++|+.+ ++|... ... .++..+|+|+++.+...
T Consensus 158 ----~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~~ 226 (308)
T 1zgk_A 158 ----RRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIR-----SGA-GVCVLHNCIYAAGGYDG 226 (308)
T ss_dssp ----CCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCC-----BSC-EEEEETTEEEEECCBCS
T ss_pred ----cccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCcc-----ccc-eEEEECCEEEEEeCCCC
Confidence 234456788899999999865322 135799999999999998 555432 223 56778999999987653
Q ss_pred ---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435 276 ---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 276 ---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~ 339 (378)
.-++|.++.. ..+|+.+..++. +. ...+++. ++.++++... ...+..||+++++|+.+.
T Consensus 227 ~~~~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 227 QDQLNSVERYDVE--TETWTFVAPMKHRRS--ALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 294 (308)
T ss_dssp SSBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred CCccceEEEEeCC--CCcEEECCCCCCCcc--ceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence 4567777753 357998876555 33 1222222 5554444432 135999999999999984
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.49 E-value=8.5e-12 Score=112.49 Aligned_cols=208 Identities=12% Similarity=0.115 Sum_probs=135.8
Q ss_pred eeccceEEEee------cCCcEEEEcCcccc---eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceE
Q 044435 104 GSCNGLLALKN------YPKGIILLNPLTKK---HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIE 174 (378)
Q Consensus 104 ~s~~GLl~l~~------~~~~~~V~NP~t~~---~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 174 (378)
...+|.+.+.. ....+.++||.|++ |..++++|.++.. .....+ .+. ++.+.-.........
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~----~~~~~~---~~~--lyv~GG~~~~~~~~~ 129 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL----AGATTL---GDM--IYVSGGFDGSRRHTS 129 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS----CEEEEE---TTE--EEEECCBCSSCBCCE
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc----eeEEEE---CCE--EEEEcccCCCcccce
Confidence 34456555442 13468999999999 9999988765421 111222 222 333321122233568
Q ss_pred EEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCC
Q 044435 175 ATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGG 253 (378)
Q Consensus 175 ~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~ 253 (378)
+++|++.+++|+.++.+ |. .......+.++|+||.+++..... ....+.+||+.+++|+.+ ++|....
T Consensus 130 ~~~~d~~~~~W~~~~~~---p~----~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~--- 198 (301)
T 2vpj_A 130 MERYDPNIDQWSMLGDM---QT----AREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTPMATKRS--- 198 (301)
T ss_dssp EEEEETTTTEEEEEEEC---SS----CCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECCCSSCCB---
T ss_pred EEEEcCCCCeEEECCCC---CC----CcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCCCCcccc---
Confidence 99999999999999877 54 234456788899999999865321 235799999999999998 5554332
Q ss_pred CcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----Ce
Q 044435 254 GGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KD 324 (378)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~ 324 (378)
.. .++..+|+|+++.+... .-++|.++.. ..+|+.+..++. +. ....++. ++.++++...+ ..
T Consensus 199 --~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~ 270 (301)
T 2vpj_A 199 --GA-GVALLNDHIYVVGGFDGTAHLSSVEAYNIR--TDSWTTVTSMTTPRC--YVGATVL-RGRLYAIAGYDGNSLLSS 270 (301)
T ss_dssp --SC-EEEEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBEEE
T ss_pred --cc-eEEEECCEEEEEeCCCCCcccceEEEEeCC--CCcEEECCCCCCccc--ceeEEEE-CCEEEEEcCcCCCccccc
Confidence 23 56778999999987653 3456777653 357998876665 33 2222332 56644444322 24
Q ss_pred EEEEECCCCeEEEEe
Q 044435 325 HCWYHLDMHRVESFL 339 (378)
Q Consensus 325 ~~~ydl~~~~~~~v~ 339 (378)
+..||+++++|+.+.
T Consensus 271 v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 271 IECYDPIIDSWEVVT 285 (301)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCeEEEcC
Confidence 899999999999984
No 7
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.40 E-value=7.3e-11 Score=106.28 Aligned_cols=195 Identities=10% Similarity=0.096 Sum_probs=129.6
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc---EEecCcccC
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL---WRRIKNIKN 193 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~---W~~~~~~~~ 193 (378)
..+.++||.|++|..++++|.++.. ...... .+...|++.. ........+++|+..++. |+.++.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~l~v~GG~--~~~~~~~~~~~~d~~~~~~~~W~~~~~~-- 99 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY----VASVSL---HDRIYVIGGY--DGRSRLSSVECLDYTADEDGVWYSVAPM-- 99 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS----CEEEEE---TTEEEEECCB--CSSCBCCCEEEEETTCCTTCCCEEECCC--
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc----ccEEEE---CCEEEEEcCC--CCCccCceEEEEECCCCCCCeeEECCCC--
Confidence 4689999999999999987764321 111112 2222232222 223345679999999999 9999877
Q ss_pred CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEc
Q 044435 194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCK 272 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~ 272 (378)
|. .......+.++|++|.+++..... ....+..||+.+++|+.+ ++|.... .. ..+..+|+|+++.+
T Consensus 100 -p~----~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG 167 (301)
T 2vpj_A 100 -NV----RRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTARE-----GA-GLVVASGVIYCLGG 167 (301)
T ss_dssp -SS----CCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCCB-----SC-EEEEETTEEEEECC
T ss_pred -CC----CccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCcc-----cc-eEEEECCEEEEECC
Confidence 54 234456788899999999865322 235799999999999998 6664332 22 56778999999987
Q ss_pred CCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435 273 YSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 273 ~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~ 339 (378)
... .-.+|.++.. ..+|+.+..++. +. ...+.+. ++.++++... ...+..||+++++|+.+.
T Consensus 168 ~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPH--TGHWTNVTPMATKRS--GAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp BCSSCBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCCCcccceEEEEeCC--CCcEEeCCCCCcccc--cceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 653 3456777753 357998866555 32 1222222 5554444332 135999999999999995
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.40 E-value=6.4e-11 Score=107.51 Aligned_cols=199 Identities=10% Similarity=0.083 Sum_probs=130.7
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEEEcCCCcEEecCccc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVYGLKVNLWRRIKNIK 192 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vyss~~~~W~~~~~~~ 192 (378)
..+.++||.|++|.. +++|.+.. . . +.+.....+...|++...... ......+++|+..+++|+.++.+
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~--r-~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~- 85 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVP--K-N--HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL- 85 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSC--S-S--EEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB-
T ss_pred CceEEECCCCCeEec-CCCCCCCC--c-c--ceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC-
Confidence 578999999999986 44433211 1 1 112222345556666543221 12234589999999999999877
Q ss_pred CCCccccccccCCcceeeCCeEEEEeecCC--CcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEE
Q 044435 193 NFPYSWADHSYGGNGAFVNGALHWLANQNQ--DEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSL 269 (378)
Q Consensus 193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~ 269 (378)
|. .+.....+.++|++|.+++... .......+.+||+.+++|+.+ ++|.... .. ..+..+|+|++
T Consensus 86 --p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv 153 (315)
T 4asc_A 86 --PS----PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY-----GH-TVLSHMDLVYV 153 (315)
T ss_dssp --SS----CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB-----SC-EEEEETTEEEE
T ss_pred --Cc----chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc-----ce-eEEEECCEEEE
Confidence 54 2344567889999999998542 122345799999999999998 6665432 23 56778999999
Q ss_pred EEcC-CC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEEEe
Q 044435 270 LCKY-SE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVESFL 339 (378)
Q Consensus 270 ~~~~-~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~v~ 339 (378)
+.+. .. .-++|.++.. ..+|+.+..++. +. ....++. ++.++++..... .+..||+++++|+.+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPK--KFEWKELAPMQTARS--LFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred EeCCCCCCcccceEEEEeCC--CCeEEECCCCCCchh--ceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 9986 22 4467777753 357998876655 33 1222232 566555554322 4999999999999995
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.38 E-value=6.6e-11 Score=106.90 Aligned_cols=196 Identities=11% Similarity=0.078 Sum_probs=130.9
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
...+.++||.+++|..++++|.++.. .....+ .+...|++.. . ......+++|+..+++|+.++.+ |
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~lyv~GG~--~-~~~~~~~~~~d~~~~~W~~~~~~---p 89 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRD----AACVFW---DNVVYILGGS--Q-LFPIKRMDCYNVVKDSWYSKLGP---P 89 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBS----CEEEEE---TTEEEEECCB--S-SSBCCEEEEEETTTTEEEEEECC---S
T ss_pred CceEEEecCCCCCEecCCCCCcccce----eEEEEE---CCEEEEEeCC--C-CCCcceEEEEeCCCCeEEECCCC---C
Confidence 45789999999999999988765422 111112 2223333322 2 34457899999999999999877 5
Q ss_pred ccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCC
Q 044435 196 YSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYS 274 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~ 274 (378)
. .......+.++|++|.+++..........+..||+.+++|+.+ ++|... ... .++..+|+|+++.+..
T Consensus 90 ~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 T----PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-----CSH-GMVEANGLIYVCGGSL 159 (306)
T ss_dssp S----CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-----BSC-EEEEETTEEEEECCEE
T ss_pred c----cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-----cee-EEEEECCEEEEECCCC
Confidence 4 2344567889999999998753333346799999999999998 666433 223 5677899999998743
Q ss_pred C-------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435 275 E-------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 275 ~-------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~ 339 (378)
. .-.+|.++.. ..+|+.+..++. +. ...+++. ++.++++... ...+..||+++++|+.+.
T Consensus 160 ~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 232 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPA--TETWTELCPMIEARK--NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS 232 (306)
T ss_dssp SCTTTCEECCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred CCCCcccccceEEEeCCC--CCeEEECCCccchhh--cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence 2 2356777653 357998876555 33 2222332 5554444321 134999999999999994
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.35 E-value=1.1e-10 Score=105.17 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=129.3
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..+.++||.+++|..++++|.++.. .. ...+ .+...|++.. ........+++|+..+++|+.++.+ |.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~---~~-~~~~---~~~lyv~GG~--~~~~~~~~~~~~d~~~~~W~~~~~~---p~ 97 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCR---AG-MVYM---AGLVFAVGGF--NGSLRVRTVDSYDPVKDQWTSVANM---RD 97 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS---CE-EEEE---TTEEEEESCB--CSSSBCCCEEEEETTTTEEEEECCC---SS
T ss_pred CcEEEEcCcCCcEeEcccCCccccc---ce-EEEE---CCEEEEEeCc--CCCccccceEEECCCCCceeeCCCC---Cc
Confidence 4578999999999999888765421 11 1111 2222232222 2223446799999999999999877 54
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE 275 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~ 275 (378)
.......+.++|++|.+++.... .....+..||+.+++|+.+ ++|... ... ..+..+|+|+++.+...
T Consensus 98 ----~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 98 ----RRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRR-----SSV-GVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp ----CCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCC-----BSC-EEEEETTEEEEECCEET
T ss_pred ----cccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcc-----cCc-eEEEECCEEEEEeCCCC
Confidence 23445678889999999986532 2235799999999999998 555432 223 56778999999987532
Q ss_pred -----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435 276 -----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 276 -----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~ 339 (378)
.-.+|.++.. ..+|+.+..++. +. ...+++. ++.++++... ...+..||+++++|+.+.
T Consensus 167 ~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 167 ASRQCLSTVECYNAT--TNEWTYIAEMSTRRS--GAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA 236 (302)
T ss_dssp TTTEECCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCCccccEEEEEeCC--CCcEEECCCCccccc--cccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence 2356777653 357999876665 33 2222232 5554444332 135999999999999995
No 11
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.34 E-value=3.1e-11 Score=109.25 Aligned_cols=198 Identities=10% Similarity=0.020 Sum_probs=130.1
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEe--cCCCcceEEEEEEcCCCcEEecCcccC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF--KSPVYHIEATVYGLKVNLWRRIKNIKN 193 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~--~~~~~~~~~~vyss~~~~W~~~~~~~~ 193 (378)
...+.++||.+++|..++++|.++.. . +... ..+...|++.... ........+++|+..+++|+.++.+
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~---~--~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-- 108 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSG---L--AGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM-- 108 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBS---C--EEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--
T ss_pred cceEEEEcCCCCeEeECCCCCccccc---c--eEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC--
Confidence 34688999999999999988765422 1 1111 1233344433321 1112335799999999999999877
Q ss_pred CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEc
Q 044435 194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCK 272 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~ 272 (378)
|. .......+.++|+||.+++.... .....+..||+.+++|+.+ ++|.... .. ..+..+|+|+++.+
T Consensus 109 -p~----~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG 176 (308)
T 1zgk_A 109 -SV----PRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRI-----GV-GVAVLNRLLYAVGG 176 (308)
T ss_dssp -SS----CCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCB-----SC-EEEEETTEEEEECC
T ss_pred -Cc----CccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCcccc-----ce-EEEEECCEEEEEeC
Confidence 54 23445678889999999876432 1224699999999999998 6664332 22 56777999999987
Q ss_pred CCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435 273 YSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 273 ~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~ 339 (378)
... .-.+|.++.. ..+|+.+..++. +. ...+++. ++.++++.... ..++.||+++++|+.+.
T Consensus 177 ~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPE--RNEWRMITAMNTIRS--GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp BCSSCBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred CCCCCcCceEEEEeCC--CCeEeeCCCCCCccc--cceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 653 3456777653 357998876655 33 1222232 55544444321 35999999999999985
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.33 E-value=2.7e-11 Score=111.99 Aligned_cols=236 Identities=13% Similarity=0.031 Sum_probs=138.5
Q ss_pred ccceEEEee--cCCcEEEEcCc--ccceeecCCCC-CCCCCCCCceeEEeeecCCCCeEEEEEEEe--c-CCCcceEEEE
Q 044435 106 CNGLLALKN--YPKGIILLNPL--TKKHRVLPKFY-RDLHGDKPSLHGFGYDVGSDDYKLVRIHVF--K-SPVYHIEATV 177 (378)
Q Consensus 106 ~~GLl~l~~--~~~~~~V~NP~--t~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~--~-~~~~~~~~~v 177 (378)
.+|.|.+.. ....++++||. +++|..++++| .++.. ..+..+ .+...|++.... . .......+++
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~----~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ----ATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS----CEEEEE---TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc----ceEEEE---CCEEEEEcCCCCCCCccceeeccEEE
Confidence 366665553 34579999998 49999999887 44321 111222 233444444311 1 1123457999
Q ss_pred EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc---------------------------------
Q 044435 178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE--------------------------------- 224 (378)
Q Consensus 178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~--------------------------------- 224 (378)
|++.+++|+.++.+ +. ..+.....+.++|+||.+++.....
T Consensus 91 yd~~~~~W~~~~~~---~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (357)
T 2uvk_A 91 YNPKTNSWVKLMSH---AP---MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY 164 (357)
T ss_dssp EETTTTEEEECSCC---CS---SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred EeCCCCcEEECCCC---CC---cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence 99999999999887 31 2233444677999999999754211
Q ss_pred ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEecC
Q 044435 225 MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTMNE 299 (378)
Q Consensus 225 ~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i~~ 299 (378)
.....+.+||+.+++|+.+ ++|.... ... .++..+|+|+++.+... .-++|.++-+.....|+.+..++.
T Consensus 165 ~~~~~v~~yd~~~~~W~~~~~~p~~~~----~~~-~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~ 239 (357)
T 2uvk_A 165 FFNKFLLSFDPSTQQWSYAGESPWYGT----AGA-AVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS 239 (357)
T ss_dssp CCCCEEEEEETTTTEEEEEEECSSCCC----BSC-EEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST
T ss_pred CCcccEEEEeCCCCcEEECCCCCCCCc----ccc-cEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC
Confidence 0125899999999999998 6664322 112 66778999999986432 345676653112357998876654
Q ss_pred -CCceeEEEEEEeCCCEEEEEeCC----------------------CeEEEEECCCCeEEEEeEeC--Cc--ceEEeeec
Q 044435 300 -NGYRVIPLAFSSRGDKVLFQKNS----------------------KDHCWYHLDMHRVESFLVKG--PS--DVHVCVDT 352 (378)
Q Consensus 300 -~~~~~~~~~~~~~g~~v~~~~~~----------------------~~~~~ydl~~~~~~~v~~~~--~~--~~~~y~~s 352 (378)
+......+++. ++.++++.... ..+..||+++++|+.+.--. .. ....+-..
T Consensus 240 ~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 318 (357)
T 2uvk_A 240 PDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNS 318 (357)
T ss_dssp TTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTE
T ss_pred CcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCE
Confidence 32112223332 55544443311 24889999999999995322 22 33444444
Q ss_pred cccCCCCC
Q 044435 353 LVSPFAES 360 (378)
Q Consensus 353 lv~~~~~~ 360 (378)
|.-+....
T Consensus 319 i~v~GG~~ 326 (357)
T 2uvk_A 319 LLIIGGET 326 (357)
T ss_dssp EEEEEEEC
T ss_pred EEEEeeeC
Confidence 44444433
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.29 E-value=2.2e-10 Score=104.15 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=125.6
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEEEcCCCcEEecCcccC
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVYGLKVNLWRRIKNIKN 193 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vyss~~~~W~~~~~~~~ 193 (378)
...++||.+++|...+ ++.+.. . .. .+.....+...|++...... ......+++|+..+++|+.++.+
T Consensus 25 ~~~~yd~~~~~W~~~~-~~~~~~--r-~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-- 96 (318)
T 2woz_A 25 AAVAYDPMENECYLTA-LAEQIP--R-NH--SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL-- 96 (318)
T ss_dssp EEEEEETTTTEEEEEE-ECTTSC--S-SE--EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB--
T ss_pred ceEEECCCCCceeccc-CCccCC--c-cc--eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC--
Confidence 4789999999998843 322110 1 11 11122334444444421111 11123489999999999999877
Q ss_pred CCccccccccCCcceeeCCeEEEEeecCC-CcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEE
Q 044435 194 FPYSWADHSYGGNGAFVNGALHWLANQNQ-DEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLC 271 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~ 271 (378)
|. . ......+.++|++|.+++... .......+.+||+.+++|+.+ ++|.... .. ..+..+|+|+++.
T Consensus 97 -p~--~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~G 165 (318)
T 2woz_A 97 -PS--A--RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY-----GH-NVISHNGMIYCLG 165 (318)
T ss_dssp -SS--C--BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE-----SC-EEEEETTEEEEEC
T ss_pred -Cc--c--ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc-----cc-EEEEECCEEEEEc
Confidence 54 2 344567889999999998752 222335799999999999998 6664322 22 5666899999998
Q ss_pred cCCC----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435 272 KYSE----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 272 ~~~~----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~ 339 (378)
+... .-++|.++.. ..+|+.+..++. +. ...+++. ++.++++.... ..+..||+++++|+.+.
T Consensus 166 G~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 238 (318)
T 2woz_A 166 GKTDDKKCTNRVFIYNPK--KGDWKDLAPMKTPRS--MFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238 (318)
T ss_dssp CEESSSCBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred CCCCCCCccceEEEEcCC--CCEEEECCCCCCCcc--cceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence 7521 3457777753 357998876655 33 1222332 56655554321 24889999999999985
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.12 E-value=3.7e-09 Score=106.27 Aligned_cols=214 Identities=9% Similarity=0.018 Sum_probs=128.5
Q ss_pred ccceEEEeec-----CCcEEEEcCcccceeecC-CCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435 106 CNGLLALKNY-----PKGIILLNPLTKKHRVLP-KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG 179 (378)
Q Consensus 106 ~~GLl~l~~~-----~~~~~V~NP~t~~~~~LP-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys 179 (378)
.+|.|.+..+ ...+.++||.+++|..++ +.|...........+.......+...|++... ........+++|+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~-~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK-APHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBS-STTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCC-CCCCccccEEEEe
Confidence 4555554432 346889999999999998 53211000011111222211023333333322 1122346799999
Q ss_pred cCCCcEEecCcccCCCccccccccCCcceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeeec----CCCCCCCCCC
Q 044435 180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSMP----MPGFGNEGGG 254 (378)
Q Consensus 180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~ 254 (378)
..+++|+.++.+ |. ....+..+.+ +|+||.+++..... .+.+||+.+++|+.+. +|....
T Consensus 475 ~~t~~W~~~~~~---p~----~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~---- 539 (695)
T 2zwa_A 475 MKTREWSMIKSL---SH----TRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSL---- 539 (695)
T ss_dssp TTTTEEEECCCC---SB----CCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCC----
T ss_pred CCCCcEEECCCC---CC----CcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCccc----
Confidence 999999999877 54 3344556665 99999999875432 6999999999999985 443322
Q ss_pred cccceEEEEC---CeEEEEEcCCC-----cEEEEEeccCCCCcc------eEEEEEecC-CCceeEEEEEEeCCCEEEEE
Q 044435 255 GELSGVYVLK---GCLSLLCKYSE-----PWDLWVMKEYGVKDS------WSKLFTMNE-NGYRVIPLAFSSRGDKVLFQ 319 (378)
Q Consensus 255 ~~~~~l~~~~---G~L~~~~~~~~-----~l~iW~l~~~~~~~~------W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~ 319 (378)
.. ..++.+ |+|+++++... .-.+|.++... .. |+.+..++. ... ...+++..++.++++.
T Consensus 540 -~~-~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~w~~~~~W~~~~~~p~~~R~-~~~~~~~~~~~iyv~G 614 (695)
T 2zwa_A 540 -VS-AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA--ENATEPITVIKKLQHPLFQRY-GSQIKYITPRKLLIVG 614 (695)
T ss_dssp -BS-CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT--TCSSCCEEEEEEEECGGGCCB-SCEEEEEETTEEEEEC
T ss_pred -ce-eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC--CccccceEEEEcCCCCCCCcc-cceEEEeCCCEEEEEC
Confidence 22 323434 89999987621 34677776532 33 888877643 221 2233444336645554
Q ss_pred eC--------CCeEEEEECCCCeEEEEeE
Q 044435 320 KN--------SKDHCWYHLDMHRVESFLV 340 (378)
Q Consensus 320 ~~--------~~~~~~ydl~~~~~~~v~~ 340 (378)
.. ...++.||+++++|+.+.+
T Consensus 615 G~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 615 GTSPSGLFDRTNSIISLDPLSETLTSIPI 643 (695)
T ss_dssp CBCSSCCCCTTTSEEEEETTTTEEEECCC
T ss_pred CccCCCCCCCCCeEEEEECCCCeEEEeec
Confidence 31 2349999999999997644
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.09 E-value=9.2e-09 Score=94.84 Aligned_cols=201 Identities=9% Similarity=0.056 Sum_probs=121.6
Q ss_pred CcEEEEcCcccceeecCCCC-CCCCCCCCceeEEeeecCCCCeEEEEEEEecC---------------------------
Q 044435 117 KGIILLNPLTKKHRVLPKFY-RDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--------------------------- 168 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--------------------------- 168 (378)
..+.++||.|++|..+++++ ..+ ....+..+ .+...|++......
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGM----AGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCC----SSEEEEEE---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred ccEEEEeCCCCcEEECCCCCCccc----ccceEEEE---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 46889999999999999877 222 11111222 23333333321110
Q ss_pred -----CCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEc--CCceee
Q 044435 169 -----PVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDL--NIETFY 241 (378)
Q Consensus 169 -----~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~--~~~~~~ 241 (378)
......+++|+..+++|+.++.+ |. .. ......+.++|+||.+++..........+..||+ .+++|+
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~--~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYAGES---PW--YG-TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEEEEC---SS--CC-CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred ccccccCCcccEEEEeCCCCcEEECCCC---CC--CC-cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 01135899999999999999777 53 21 2235578899999999875432222346788876 899999
Q ss_pred ee-cCCCCCCCCCCcccceEEEECCeEEEEEcCC-----------------C---cEEEEEeccCCCCcceEEEEEecC-
Q 044435 242 SM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYS-----------------E---PWDLWVMKEYGVKDSWSKLFTMNE- 299 (378)
Q Consensus 242 ~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~-----------------~---~l~iW~l~~~~~~~~W~~~~~i~~- 299 (378)
.+ ++|.... .... .++..+|+|+++.+.. . ...+|.++.. ..+|+++..++.
T Consensus 233 ~~~~~~~~~~---~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~ 306 (357)
T 2uvk_A 233 KLAPVSSPDG---VAGG-FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQG 306 (357)
T ss_dssp ECCCSSTTTC---CBSC-EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSC
T ss_pred ecCCCCCCcc---cccc-eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCC
Confidence 88 5543221 1122 4678899999998732 1 1356666643 357999987776
Q ss_pred CCceeEEEEEEeCCCEEEEEeCC------CeEEEEECCCCeEEEEe
Q 044435 300 NGYRVIPLAFSSRGDKVLFQKNS------KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 300 ~~~~~~~~~~~~~g~~v~~~~~~------~~~~~ydl~~~~~~~v~ 339 (378)
+.. ... +.-++.++++...+ ..++.+++++++|....
T Consensus 307 r~~--~~~-~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 307 RAY--GVS-LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CBS--SEE-EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred ccc--cee-EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 442 122 22366666665532 14888999999998774
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.01 E-value=4.2e-07 Score=86.40 Aligned_cols=294 Identities=12% Similarity=0.099 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHhcCCccccceeeecchhhhcccCC-hhHHHHHHhhcccCCCC--eEE--EEEecCCC---C--ceeEEE
Q 044435 5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDS-KDFINLHLSRSIKTSSN--RSL--VICSDLDY---N--LKTRFH 74 (378)
Q Consensus 5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~-p~F~~~~~~~~~~~~~~--~~l--~~~~~~~~---~--~~~~~~ 74 (378)
.||+|++.+||+.||+++|+++.+|||+|+.++.+ +..-+.+.......... ..+ -....... . ....+.
T Consensus 17 ~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
T 3v7d_B 17 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFL 96 (464)
T ss_dssp HSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHHHHH
Confidence 49999999999999999999999999999999998 66554443221100000 000 00000000 0 000000
Q ss_pred ec--cCCCCCCCCCCCceeeccc-CccceEEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEee
Q 044435 75 SL--SLDSLGGGDDDGSIIDLRV-NEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGY 151 (378)
Q Consensus 75 ~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~ 151 (378)
.- ....+...........+.. .......+...+++++....+..+.+||..+++...--... ......+.+
T Consensus 97 ~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h------~~~V~~l~~ 170 (464)
T 3v7d_B 97 ENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVWALKY 170 (464)
T ss_dssp HHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEE
T ss_pred HhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC------CcCEEEEEE
Confidence 00 0000000000011111211 11111233444566666667788999999887754322111 122345555
Q ss_pred ecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec-CcccCCCccccccccCCcceee----CCeEEEEeecCCCccc
Q 044435 152 DVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI-KNIKNFPYSWADHSYGGNGAFV----NGALHWLANQNQDEMI 226 (378)
Q Consensus 152 d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~-~~~~~~p~~~~~~~~~~~~v~~----~G~lyw~~~~~~~~~~ 226 (378)
.+.. .++.... ...+.+++..++.-... ... .. . -.++.+ +|.....+..++
T Consensus 171 ~~~~---~l~s~s~------dg~i~vwd~~~~~~~~~~~~h---~~--~-----v~~l~~~~~~~~~~l~s~s~d~---- 227 (464)
T 3v7d_B 171 AHGG---ILVSGST------DRTVRVWDIKKGCCTHVFEGH---NS--T-----VRCLDIVEYKNIKYIVTGSRDN---- 227 (464)
T ss_dssp CSTT---EEEEEET------TSCEEEEETTTTEEEEEECCC---SS--C-----EEEEEEEESSSCEEEEEEETTS----
T ss_pred cCCC---EEEEEeC------CCCEEEEECCCCcEEEEECCC---CC--c-----cEEEEEecCCCCCEEEEEcCCC----
Confidence 4433 3333321 34688888877642211 100 00 0 011111 344444444432
Q ss_pred ceEEEEEEcCCceeeee-cC----------CCCC------CCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 227 NDLILAFDLNIETFYSM-PM----------PGFG------NEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 227 ~~~i~~fD~~~~~~~~i-~l----------P~~~------~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
.|..+|+.+..-... .. |... .......+ .-...+|.+.++...++.+.+|-+..
T Consensus 228 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~d~~i~vwd~~~----- 299 (464)
T 3v7d_B 228 --TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVSGHGNIVVSGSYDNTLIVWDVAQ----- 299 (464)
T ss_dssp --CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE-EEEEEETTEEEEEETTSCEEEEETTT-----
T ss_pred --cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE-EEEcCCCCEEEEEeCCCeEEEEECCC-----
Confidence 688888876543211 00 0000 00000111 11234566666776777999998764
Q ss_pred ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
-..+..+.........+++.++|..++....++.+..||+++++..
T Consensus 300 -~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 300 -MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp -TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred -CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 2233344431112556777778887777777777999999877644
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.97 E-value=4.1e-07 Score=86.08 Aligned_cols=282 Identities=11% Similarity=0.035 Sum_probs=140.7
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhhcccCCCCeEEEEEecCCCC---ceeE-EEec--c
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYN---LKTR-FHSL--S 77 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~--~ 77 (378)
..||+|++..||+.|++++|.++.+|||+|+.++.++.+-+..........+ ...-........ ..+. .|.. .
T Consensus 20 ~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wk~~~~~~~~ 98 (445)
T 2ovr_B 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEP-LHIKRRKVIKPGFIHSPWKSAYIRQHR 98 (445)
T ss_dssp TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSC-CCCCC--CCSSCCCCCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccc-cccccceecCCCccCCcHHHHHhhhhh
Confidence 4699999999999999999999999999999999998876665543221100 000000000000 0000 0000 0
Q ss_pred C-CCCCCCCCCCceeecccC-ccceEEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC
Q 044435 78 L-DSLGGGDDDGSIIDLRVN-EMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS 155 (378)
Q Consensus 78 ~-~~~~~~~~~~~~~~l~~~-~~~~~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~ 155 (378)
. ..+... .......+..+ ......+...+.+++....+..+.|||..+++....-... ......+.++
T Consensus 99 ~~~~w~~~-~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~--- 168 (445)
T 2ovr_B 99 IDTNWRRG-ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH------TGGVWSSQMR--- 168 (445)
T ss_dssp HHHHHHHS-CCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC------SSCEEEEEEE---
T ss_pred hhhcccCC-CcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC------CCCEEEEEec---
Confidence 0 000000 00001111111 1111234444555666667788999999988755322211 1123345554
Q ss_pred CCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEc
Q 044435 156 DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDL 235 (378)
Q Consensus 156 ~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~ 235 (378)
+.+ ++... ....+.+++..++.-... . .. ....-.++.+++.....+..++ .|..+|+
T Consensus 169 ~~~-l~s~~------~dg~i~vwd~~~~~~~~~--~---~~----h~~~v~~~~~~~~~l~s~s~dg------~i~~wd~ 226 (445)
T 2ovr_B 169 DNI-IISGS------TDRTLKVWNAETGECIHT--L---YG----HTSTVRCMHLHEKRVVSGSRDA------TLRVWDI 226 (445)
T ss_dssp TTE-EEEEE------TTSCEEEEETTTTEEEEE--E---CC----CSSCEEEEEEETTEEEEEETTS------EEEEEES
T ss_pred CCE-EEEEe------CCCeEEEEECCcCcEEEE--E---CC----CCCcEEEEEecCCEEEEEeCCC------EEEEEEC
Confidence 232 22222 134688888877632211 1 00 0011124555666655555543 7999998
Q ss_pred CCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCC
Q 044435 236 NIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRG 313 (378)
Q Consensus 236 ~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g 313 (378)
.+++.... ... .. .+ .....+|...++...++.+.+|.+... ..+..+.. .. ...-+.+ +|
T Consensus 227 ~~~~~~~~~~~~--~~-----~v-~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-~v~~~~~--~~ 289 (445)
T 2ovr_B 227 ETGQCLHVLMGH--VA-----AV-RCVQYDGRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTN-RVYSLQF--DG 289 (445)
T ss_dssp SSCCEEEEEECC--SS-----CE-EEEEECSSCEEEEETTSCEEEEEGGGT------EEEEEECCCSS-CEEEEEE--CS
T ss_pred CCCcEEEEEcCC--cc-----cE-EEEEECCCEEEEEcCCCEEEEEECCCC------cEeEEecCCCC-ceEEEEE--CC
Confidence 87654322 211 11 11 222337777777777778899977641 22333332 11 1122222 55
Q ss_pred CEEEEEeCCCeEEEEECCCCeE
Q 044435 314 DKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 314 ~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
..++....++.+..||+++++.
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGNC 311 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCCE
T ss_pred CEEEEEeCCCeEEEEECCCCCE
Confidence 5555555566677777666553
No 18
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.95 E-value=1.7e-10 Score=101.75 Aligned_cols=47 Identities=21% Similarity=0.428 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHhcCCccccc-eeeecchhhhcccCChhHHHHHHhhc
Q 044435 4 WKLPLDVIIDILIRLPGKSLL-RFRCISKSFRSLIDSKDFINLHLSRS 50 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~-r~r~VcK~W~~li~~p~F~~~~~~~~ 50 (378)
..||+||+++||+|||+++|+ ||++|||+|++|+++|.|.+.++.+.
T Consensus 52 ~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 52 AELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 579999999999999999999 99999999999999999999988776
No 19
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.95 E-value=1.4e-10 Score=75.36 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhH
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDF 42 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F 42 (378)
..||+|++.+||++||++++.++++|||+|+.++.++.|
T Consensus 10 ~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l 48 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (53)
T ss_dssp CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred HHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence 469999999999999999999999999999999999876
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.82 E-value=4.6e-08 Score=97.79 Aligned_cols=200 Identities=10% Similarity=0.006 Sum_probs=120.7
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS 197 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~ 197 (378)
.+.++||.|++|..+++++.++.. .+.+..+. ..+...|++.. ....+++|++.++.|+.++.+ |.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~---~~~~~~~~-~~g~lyv~GG~------~~~~v~~yd~~t~~W~~~~~~---~~- 285 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDM---FCPGISMD-GNGQIVVTGGN------DAKKTSLYDSSSDSWIPGPDM---QV- 285 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCC---SSCEEEEC-TTSCEEEECSS------STTCEEEEEGGGTEEEECCCC---SS-
T ss_pred EEEEEeCCCCcEEeCcccCCCCCC---ccccccCC-CCCCEEEeCCC------CCCceEEecCcCCceeECCCC---Cc-
Confidence 478999999999999877654321 11122211 12233333321 122799999999999999877 44
Q ss_pred ccccccCCcceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeee------cCCCCCC------CCCC----------
Q 044435 198 WADHSYGGNGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSM------PMPGFGN------EGGG---------- 254 (378)
Q Consensus 198 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i------~lP~~~~------~~~~---------- 254 (378)
.+.....+.+ +|++|.+++..........+.+||+.+++|+.+ ++|.... ....
T Consensus 286 ---~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~ 362 (656)
T 1k3i_A 286 ---ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSV 362 (656)
T ss_dssp ---CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCE
T ss_pred ---cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcE
Confidence 3344556777 999999998433222335799999999999986 2332210 0000
Q ss_pred -----------------------------------cccceEEE----ECCeEEEEEcCCC---------cEEEEEeccCC
Q 044435 255 -----------------------------------GELSGVYV----LKGCLSLLCKYSE---------PWDLWVMKEYG 286 (378)
Q Consensus 255 -----------------------------------~~~~~l~~----~~G~L~~~~~~~~---------~l~iW~l~~~~ 286 (378)
... ..++ .+|+|+++.+... ...|+..+..
T Consensus 363 ~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~- 440 (656)
T 1k3i_A 363 FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG- 440 (656)
T ss_dssp EECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT-
T ss_pred EEecCccceeeeecCCcceeecCCccccccccCCCCCC-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC-
Confidence 001 1222 3789999887421 1245554432
Q ss_pred CCcceEEEE--EecC-CCceeEEEEEEeCCCEEEEEeCC-----------CeEEEEECCCCeEEEEe
Q 044435 287 VKDSWSKLF--TMNE-NGYRVIPLAFSSRGDKVLFQKNS-----------KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 287 ~~~~W~~~~--~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----------~~~~~ydl~~~~~~~v~ 339 (378)
...|..+. .++. +. ....++.++|.++++...+ ..+..||+++++|+.+.
T Consensus 441 -~~~W~~~~~~~mp~~R~--~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 441 -TSPNTVFASNGLYFART--FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp -SCCEEEECTTCCSSCCB--SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred -CCCeeEEccCCCCCCcc--cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 35798876 4554 33 2334445578855555321 24899999999999874
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.76 E-value=1e-06 Score=83.21 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=141.4
Q ss_pred CCCHH----HHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhhcccC---------CCCe--EEEEEecCC---
Q 044435 5 KLPLD----VIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKT---------SSNR--SLVICSDLD--- 66 (378)
Q Consensus 5 ~LP~d----ll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~---------~~~~--~l~~~~~~~--- 66 (378)
.||+| |+..||+.|++++|.++.+|||+|+.+++++.+-+......... ...+ .++......
T Consensus 13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (435)
T 1p22_A 13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNA 92 (435)
T ss_dssp HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC---------
T ss_pred HCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCCCC
Confidence 38999 99999999999999999999999999998776544433221100 0000 000000000
Q ss_pred -CCcee-EEEec-------cCCCCCCCCCCCceeeccc----CccceEEeeeccceEEEeecCCcEEEEcCcccceeecC
Q 044435 67 -YNLKT-RFHSL-------SLDSLGGGDDDGSIIDLRV----NEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLP 133 (378)
Q Consensus 67 -~~~~~-~~~~~-------~~~~~~~~~~~~~~~~l~~----~~~~~~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP 133 (378)
..... .++.- -...+... ......+.. ...+ ..+...+.+++....+..+.|||..+++....-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~v-~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~ 169 (435)
T 1p22_A 93 PPNSFYRALYPKIIQDIETIESNWRCG--RHSLQRIHCRSETSKGV-YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 169 (435)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEECCCSSCCCE-EEEECCSSEEEEEESSSCEEEEESSSCCEEEEE
T ss_pred CchhhHHhhhhhhhcchhHHHhhhccC--CccceEEecccCCCCcE-EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE
Confidence 00000 00000 00001110 000011110 1111 233333444555556778999999988765432
Q ss_pred CCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe
Q 044435 134 KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA 213 (378)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~ 213 (378)
... ......+.+| +.+-+.+ . ....+.+++..++.-... . .. ....-.++.+++.
T Consensus 170 ~~h------~~~v~~l~~~---~~~l~sg-~------~dg~i~vwd~~~~~~~~~--~---~~----h~~~v~~l~~~~~ 224 (435)
T 1p22_A 170 TGH------TGSVLCLQYD---ERVIITG-S------SDSTVRVWDVNTGEMLNT--L---IH----HCEAVLHLRFNNG 224 (435)
T ss_dssp CCC------SSCEEEEECC---SSEEEEE-E------TTSCEEEEESSSCCEEEE--E---CC----CCSCEEEEECCTT
T ss_pred cCC------CCcEEEEEEC---CCEEEEE-c------CCCeEEEEECCCCcEEEE--E---cC----CCCcEEEEEEcCC
Confidence 211 1123345553 2332222 2 134688888877643211 1 00 0011123445555
Q ss_pred EEEEeecCCCcccceEEEEEEcCCceeeee--cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcce
Q 044435 214 LHWLANQNQDEMINDLILAFDLNIETFYSM--PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSW 291 (378)
Q Consensus 214 lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W 291 (378)
....+..++ .|..+|+.+..-... .+..+.. .+ .....+|...++...++.+.+|.+...
T Consensus 225 ~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~-----~v-~~~~~~~~~l~s~~~dg~i~vwd~~~~------ 286 (435)
T 1p22_A 225 MMVTCSKDR------SIAVWDMASPTDITLRRVLVGHRA-----AV-NVVDFDDKYIVSASGDRTIKVWNTSTC------ 286 (435)
T ss_dssp EEEEEETTS------CEEEEECSSSSCCEEEEEECCCSS-----CE-EEEEEETTEEEEEETTSEEEEEETTTC------
T ss_pred EEEEeeCCC------cEEEEeCCCCCCceeeeEecCCCC-----cE-EEEEeCCCEEEEEeCCCeEEEEECCcC------
Confidence 555555442 689999876543211 1111111 11 222337777777777779999987652
Q ss_pred EEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 292 SKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 292 ~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
..+..+.. .. .+.++.-+++.++....++.+..||+++++..
T Consensus 287 ~~~~~~~~~~~---~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 287 EFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp CEEEEEECCSS---CEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred cEEEEEcCCCC---cEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 23334443 22 12233335777777777888999999977643
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.62 E-value=7.7e-07 Score=89.37 Aligned_cols=177 Identities=10% Similarity=0.062 Sum_probs=113.0
Q ss_pred CcceEEEEEEcCCCcEEecC-cccCCCcc-ccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-c
Q 044435 170 VYHIEATVYGLKVNLWRRIK-NIKNFPYS-WADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-P 244 (378)
Q Consensus 170 ~~~~~~~vyss~~~~W~~~~-~~~~~p~~-~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~ 244 (378)
.....+++|+..+++|+.++ .+ |.+ ....+..+..+.+ +|++|.+++..........+..||+.+++|+.+ +
T Consensus 409 ~~~~~v~~yd~~~~~W~~~~~~~---p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~ 485 (695)
T 2zwa_A 409 YRVNEILQLSIHYDKIDMKNIEV---SSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS 485 (695)
T ss_dssp SBCCCEEEEEECSSCEEEEECCC---CCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC
T ss_pred CCcCcEEEEECCCCeEEEeccCC---CCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC
Confidence 34567999999999999987 53 210 0223445667888 999999998764332335799999999999998 6
Q ss_pred CCCCCCCCCCcccceEEEE-CCeEEEEEcCCC-cEEEEEeccCCCCcceEEEEE---ecC-CCceeEEEEEEeC-CCEEE
Q 044435 245 MPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE-PWDLWVMKEYGVKDSWSKLFT---MNE-NGYRVIPLAFSSR-GDKVL 317 (378)
Q Consensus 245 lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~-~l~iW~l~~~~~~~~W~~~~~---i~~-~~~~~~~~~~~~~-g~~v~ 317 (378)
+|.... .. ..+.. +|+|+++++... . .+|.++.. ...|+.+.. ++. +.. ...+.+..+ +.+++
T Consensus 486 ~p~~R~-----~h-~~~~~~~~~iyv~GG~~~~~-~v~~yd~~--t~~W~~~~~~g~~p~~r~~-~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 486 LSHTRF-----RH-SACSLPDGNVLILGGVTEGP-AMLLYNVT--EEIFKDVTPKDEFFQNSLV-SAGLEFDPVSKQGII 555 (695)
T ss_dssp CSBCCB-----SC-EEEECTTSCEEEECCBCSSC-SEEEEETT--TTEEEECCCSSGGGGSCCB-SCEEEEETTTTEEEE
T ss_pred CCCCcc-----cc-eEEEEcCCEEEEECCCCCCC-CEEEEECC--CCceEEccCCCCCCCcccc-eeEEEEeCCCCEEEE
Confidence 664322 22 45664 999999998665 4 77777753 357998775 333 321 112333333 44444
Q ss_pred EEeC-------CCeEEEEECCCCe------EEEEeEe---CCc--ceEEee-eccccCCCC
Q 044435 318 FQKN-------SKDHCWYHLDMHR------VESFLVK---GPS--DVHVCV-DTLVSPFAE 359 (378)
Q Consensus 318 ~~~~-------~~~~~~ydl~~~~------~~~v~~~---~~~--~~~~y~-~slv~~~~~ 359 (378)
+... ...++.||+++++ |+.+.-. +.. .+..+- ..|.-+.+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCB
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCc
Confidence 4432 1359999999999 8888542 122 445555 455555443
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.48 E-value=1.2e-06 Score=87.49 Aligned_cols=193 Identities=9% Similarity=-0.009 Sum_probs=113.4
Q ss_pred EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEEEcCCCcEEecCcccCC
Q 044435 119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVYGLKVNLWRRIKNIKNF 194 (378)
Q Consensus 119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vyss~~~~W~~~~~~~~~ 194 (378)
+..+||.+++|..++++|... . ..++.+..+...|++...... ......+++|+..+++|+.+..+
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~~-----~--~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--- 237 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIVP-----A--AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--- 237 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSCC-----S--EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---
T ss_pred cccCCCCCCeeeeeccCCCCc-----e--eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---
Confidence 455699999999988777521 1 222333233344443322111 11234789999999999998776
Q ss_pred CccccccccCCc-ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEE
Q 044435 195 PYSWADHSYGGN-GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLC 271 (378)
Q Consensus 195 p~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~ 271 (378)
|. ........ .+..||+||.+++... ..+..||+.+++|..+ ++|... ... ..+.+ +|+|+++.
T Consensus 238 ~~--~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R-----~~~-s~~~~~dg~iyv~G 304 (656)
T 1k3i_A 238 VT--KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR-----GYQ-SSATMSDGRVFTIG 304 (656)
T ss_dssp EC--SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCC-----SSC-EEEECTTSCEEEEC
T ss_pred CC--CCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccc-----ccc-ceEEecCCeEEEEe
Confidence 44 22222222 2346899999998654 2699999999999988 555432 233 56777 99999999
Q ss_pred cC-CC---cEEEEEeccCCCCcceEEEEEe-----cCC-C-----c--eeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 272 KY-SE---PWDLWVMKEYGVKDSWSKLFTM-----NEN-G-----Y--RVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 272 ~~-~~---~l~iW~l~~~~~~~~W~~~~~i-----~~~-~-----~--~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+. ++ .-.+|..+.. ..+|+.+... ... . . ....++- .+|. ++.......+..||+++++
T Consensus 305 G~~~~~~~~~~~e~yd~~--t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~-~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 305 GSWSGGVFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGS-VFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp CCCCSSSCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGC-EEECCSSSEEEEEECSTTC
T ss_pred CcccCCcccccceEeCCC--CCcceeCCCccccccccccccceeecCCceEEEEC-CCCc-EEEecCccceeeeecCCcc
Confidence 83 32 1234444432 2579876221 111 0 0 0111111 1333 3333334569999999999
Q ss_pred EEEE
Q 044435 335 VESF 338 (378)
Q Consensus 335 ~~~v 338 (378)
|...
T Consensus 381 w~~~ 384 (656)
T 1k3i_A 381 DVKS 384 (656)
T ss_dssp EEEE
T ss_pred eeec
Confidence 8754
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.66 E-value=1.1e-05 Score=70.40 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhhcc
Q 044435 5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSI 51 (378)
Q Consensus 5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~ 51 (378)
.||+|++..||+.|++++|+++.+|||+||.+.+++..=+.+..+..
T Consensus 7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 59999999999999999999999999999999999988877776653
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.05 E-value=9.2e-05 Score=67.11 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChh
Q 044435 4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKD 41 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~ 41 (378)
..||+|++.+||.+|+.+++.+++.|||+|+.++.+|.
T Consensus 10 ~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp SSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 46999999999999999999999999999999987655
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.90 E-value=0.23 Score=44.90 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=107.6
Q ss_pred eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435 109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~ 188 (378)
+|+....+..+.|||..+++....-..... ......+.+.+..+.+-+.+ . ....+.+++..+...+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~-~------~d~~i~iwd~~~~~~~~~ 156 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGP----GDAITGMKFNQFNTNQLFVS-S------IRGATTLRDFSGSVIQVF 156 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCST----TCBEEEEEEETTEEEEEEEE-E------TTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCc----CCceeEEEeCCCCCCEEEEE-e------CCCEEEEEECCCCceEEE
Confidence 444444566788999988776544332111 22344566665433333322 1 134688888887665554
Q ss_pred CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-
Q 044435 189 KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC- 266 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~- 266 (378)
... .. .......-...-+|.....+..+. .|..+|+..+....+..... .+..+... +|.
T Consensus 157 ~~~---~~--~~~~v~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~h~~-------~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 157 AKT---DS--WDYWYCCVDVSVSRQMLATGDSTG------RLLLLGLDGHEIFKEKLHKA-------KVTHAEFNPRCDW 218 (383)
T ss_dssp ECC---CC--SSCCEEEEEEETTTTEEEEEETTS------EEEEEETTSCEEEEEECSSS-------CEEEEEECSSCTT
T ss_pred ecc---CC--CCCCeEEEEECCCCCEEEEECCCC------CEEEEECCCCEEEEeccCCC-------cEEEEEECCCCCC
Confidence 322 10 000000111223566555555442 79999997665555432211 11033333 455
Q ss_pred EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeE
Q 044435 267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
+.+....++.+.+|.+....... .....+.. .. ..-+.+.+ +|..++....++.+..||+++.+.
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKN--SYIAEMPHEKP--VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTT--CEEEEEECSSC--EEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEEeCCCEEEEEeCCCCCccc--ceEEEecCCCc--eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 77777777799999998643212 22233333 22 55677888 898787787788899999987653
No 27
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.83 E-value=0.2 Score=44.71 Aligned_cols=196 Identities=8% Similarity=-0.036 Sum_probs=103.0
Q ss_pred cceEEEeec-----CCcEEEEcCcccceeec-CCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 107 NGLLALKNY-----PKGIILLNPLTKKHRVL-PKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 107 ~GLl~l~~~-----~~~~~V~NP~t~~~~~L-P~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+|++.+... ...+.++||.|++...- ......... .....++.++. ....+.. . ....+.+++.
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~---~~lyv~~-~-----~~~~v~viD~ 71 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKL-GDVAQSMVIRD---GIGWIVV-N-----NSHVIFAIDI 71 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCC-BSCEEEEEEET---TEEEEEE-G-----GGTEEEEEET
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCccc-CccceEEEEEC---CEEEEEE-c-----CCCEEEEEEC
Confidence 455555532 56789999999887531 110000000 01112333432 2222221 1 2357888998
Q ss_pred CCCcE-EecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcc
Q 044435 181 KVNLW-RRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGE 256 (378)
Q Consensus 181 ~~~~W-~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~ 256 (378)
.++.- ++++.. . ...++. -+|.+|+..... ..|.++|+.+.+.. .++++...... ..
T Consensus 72 ~t~~~~~~i~~~---~--------~p~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~--~~ 132 (328)
T 3dsm_A 72 NTFKEVGRITGF---T--------SPRYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMES--GS 132 (328)
T ss_dssp TTCCEEEEEECC---S--------SEEEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTT--CB
T ss_pred cccEEEEEcCCC---C--------CCcEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccC--CC
Confidence 87654 223211 0 111233 478888876433 37999999988765 45665411100 01
Q ss_pred cceEEEECCeEEEEEcC-CCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----------C
Q 044435 257 LSGVYVLKGCLSLLCKY-SEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----------K 323 (378)
Q Consensus 257 ~~~l~~~~G~L~~~~~~-~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----------~ 323 (378)
...++..+|+|++.... ...+.++-++. . ..+..++. .. ..-+.+.++|. +++.... .
T Consensus 133 p~~i~~~~~~lyv~~~~~~~~v~viD~~t----~--~~~~~i~~g~~--p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~ 203 (328)
T 3dsm_A 133 TEQMVQYGKYVYVNCWSYQNRILKIDTET----D--KVVDELTIGIQ--PTSLVMDKYNK-MWTITDGGYEGSPYGYEAP 203 (328)
T ss_dssp CCCEEEETTEEEEEECTTCCEEEEEETTT----T--EEEEEEECSSC--BCCCEECTTSE-EEEEBCCBCTTCSSCBCCC
T ss_pred cceEEEECCEEEEEcCCCCCEEEEEECCC----C--eEEEEEEcCCC--ccceEEcCCCC-EEEEECCCccCCccccCCc
Confidence 11445578899998753 44655554443 1 22334443 22 22355566787 5554432 4
Q ss_pred eEEEEECCCCeEEE-EeE
Q 044435 324 DHCWYHLDMHRVES-FLV 340 (378)
Q Consensus 324 ~~~~ydl~~~~~~~-v~~ 340 (378)
.++.+|++++++.+ +.+
T Consensus 204 ~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCeEEEEEec
Confidence 69999999998763 443
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.27 Score=44.02 Aligned_cols=192 Identities=9% Similarity=0.071 Sum_probs=103.6
Q ss_pred EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435 110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~ 188 (378)
|+....+..+.|||...+....+.....+ ......+.+.+.. +.+-+ .... ...+.+|+..++.|...
T Consensus 26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~-s~~~------dg~v~iwd~~~~~~~~~ 94 (379)
T 3jrp_A 26 LATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILA-SCSY------DGKVLIWKEENGRWSQI 94 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEE-EEET------TSCEEEEEEETTEEEEE
T ss_pred EEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCEEE-Eecc------CCEEEEEEcCCCceeEe
Confidence 33333556678888764333222211111 1123345554332 33333 2221 24688889888887665
Q ss_pred CcccCCCccccccccCCcceee--C--CeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE
Q 044435 189 KNIKNFPYSWADHSYGGNGAFV--N--GALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL 263 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~~--~--G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~ 263 (378)
... .. . ...-.++.+ + |.+...+..+. .|..+|+.+..- ..+.+..+.. .+..+...
T Consensus 95 ~~~---~~--~--~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~~~~~-----~v~~~~~~ 156 (379)
T 3jrp_A 95 AVH---AV--H--SASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAI-----GVNSASWA 156 (379)
T ss_dssp EEE---CC--C--SSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEEECCTT-----CEEEEEEC
T ss_pred eee---cC--C--CcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEecCCCC-----ceEEEEEc
Confidence 443 11 0 001112222 2 55555555442 788899877522 2222211111 01022222
Q ss_pred --------------CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeC---CCEEEEEeCCCeE
Q 044435 264 --------------KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSR---GDKVLFQKNSKDH 325 (378)
Q Consensus 264 --------------~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~---g~~v~~~~~~~~~ 325 (378)
+|.+.++...++.+.+|.+... ...|.....+.. .. ...-+.+.++ |..++....++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--AQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETT--TTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCC--CcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 4777777777789999998753 245777777765 32 2556777787 7767777777789
Q ss_pred EEEECCCC
Q 044435 326 CWYHLDMH 333 (378)
Q Consensus 326 ~~ydl~~~ 333 (378)
..||+++.
T Consensus 234 ~iwd~~~~ 241 (379)
T 3jrp_A 234 IIWTQDNE 241 (379)
T ss_dssp EEEEESST
T ss_pred EEEeCCCC
Confidence 99998876
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.25 Score=44.22 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=105.6
Q ss_pred eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcE-E
Q 044435 109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLW-R 186 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W-~ 186 (378)
+|+....+..+.|||..++++..+-..... ......+.+.+.. +.+-+++ . ....+.+|+..++.- .
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~-~------~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVA-S------SDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEE-E------TTSEEEEEECCTTSCCC
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCC----CcceEEEEeCCCCCCCEEEEe-c------CCCcEEEEecCCCCcee
Confidence 344445667789999988875444322221 1234456666653 3333333 2 134677888776521 1
Q ss_pred ecCcccCCCccccccccCCc--------ceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCCc
Q 044435 187 RIKNIKNFPYSWADHSYGGN--------GAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGGG 255 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~--------~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~~ 255 (378)
......+ ........+... ...-+|.+...+..+. .|..||+.+. .+..+ .+..+...
T Consensus 140 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~~~---- 208 (379)
T 3jrp_A 140 PIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDW---- 208 (379)
T ss_dssp EEEEECC-TTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSC----
T ss_pred eEEecCC-CCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEecccCc----
Confidence 1100000 000000000000 0001466666655543 6888887643 34333 33322211
Q ss_pred ccceEEEE-C---CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 256 ELSGVYVL-K---GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 256 ~~~~l~~~-~---G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
-. .+... + |.+.+....++.+.||.+.... ..+... .+.. ......-+.+.++|..++....++.+..||
T Consensus 209 v~-~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 209 VR-DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ--GPWKKT-LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp EE-EEEECCCCSSSEEEEEEETTSCEEEEEESSTT--SCCEEE-ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred Ee-EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC--ccceee-eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 11 33333 4 6777777777899999998632 223222 2222 122355677788999788777788899999
Q ss_pred CC-CCeEEEEe
Q 044435 330 LD-MHRVESFL 339 (378)
Q Consensus 330 l~-~~~~~~v~ 339 (378)
++ .++|+.+.
T Consensus 285 ~~~~~~~~~~~ 295 (379)
T 3jrp_A 285 ENLEGKWEPAG 295 (379)
T ss_dssp EEETTEEEEEE
T ss_pred CCCCCcccccc
Confidence 88 56777774
No 30
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.42 Score=48.08 Aligned_cols=188 Identities=8% Similarity=0.067 Sum_probs=102.3
Q ss_pred ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCccc
Q 044435 114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIK 192 (378)
Q Consensus 114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~ 192 (378)
..+..+.|||..++....+.....+ ......+.+.+.. +.+-+ .... ...+.+++..++.|......
T Consensus 28 ~~dg~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~-s~s~------Dg~I~vwd~~~~~~~~~~~~- 95 (753)
T 3jro_A 28 SSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILA-SCSY------DGKVLIWKEENGRWSQIAVH- 95 (753)
T ss_dssp ETTTEEEEEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSEEE-EEET------TSCEEEEEEETTEEEEEEEE-
T ss_pred ECCCcEEEEecCCCCCccceeccCC----cCceEEEEecCCCCCCEEE-EEeC------CCeEEEEECCCCcccccccc-
Confidence 3445567777664433333222211 1234456665543 33333 3221 34688888888887665433
Q ss_pred CCCccccccccCCcceee--C--CeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE----
Q 044435 193 NFPYSWADHSYGGNGAFV--N--GALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL---- 263 (378)
Q Consensus 193 ~~p~~~~~~~~~~~~v~~--~--G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~---- 263 (378)
.. .. ..-.++.+ + |.+...+..++ .|..+|+.+..-. .+.+..+.. .+..+...
T Consensus 96 --~~--h~--~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~-----~v~~l~~~p~~~ 158 (753)
T 3jro_A 96 --AV--HS--ASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATI 158 (753)
T ss_dssp --CC--CS--SCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSS-----CEEEEEECCCC-
T ss_pred --cC--CC--CCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCC-----ceEEEEecCccc
Confidence 11 10 01112222 2 55665555543 7888998766221 111111111 01022222
Q ss_pred ----------CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeC---CCEEEEEeCCCeEEEEE
Q 044435 264 ----------KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSR---GDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 264 ----------~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~---g~~v~~~~~~~~~~~yd 329 (378)
+|.+.++...++.+.+|.+.... ..+.....+.. .. ...-+.+.++ |..++....++.+..||
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCc--ccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 46777777777899999998632 45776666665 32 2566777777 77677777777899999
Q ss_pred CCCC
Q 044435 330 LDMH 333 (378)
Q Consensus 330 l~~~ 333 (378)
++++
T Consensus 236 ~~~~ 239 (753)
T 3jro_A 236 QDNE 239 (753)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 9876
No 31
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.27 E-value=0.00066 Score=66.50 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHhcCC-ccccceeeecchhhhcc
Q 044435 4 WKLPLDVIIDILIRLP-GKSLLRFRCISKSFRSL 36 (378)
Q Consensus 4 ~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~~l 36 (378)
..||||++.+||.+|| .+++.+++.|||+|+.+
T Consensus 7 ~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 7 LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4699999999999999 99999999999999987
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.22 E-value=0.56 Score=41.03 Aligned_cols=199 Identities=9% Similarity=0.016 Sum_probs=106.9
Q ss_pred EeeeccceEEEeecCCcEEEEcCcccceeec-CCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVL-PKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~L-P~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+.-+.+|-+++......+.|||..+++.... .......+ ......+.+.+.. .+-+++ . ....+.+|+.
T Consensus 57 ~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~-~------~d~~i~~~d~ 126 (337)
T 1gxr_A 57 VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPDG-CTLIVG-G------EASTLSIWDL 126 (337)
T ss_dssp EEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCT--TSBEEEEEECTTS-SEEEEE-E------SSSEEEEEEC
T ss_pred EEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCC--CCcEEEEEEcCCC-CEEEEE-c------CCCcEEEEEC
Confidence 3334456555444467788999877653211 11110011 2234456666643 332222 2 1346889998
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGEL 257 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~ 257 (378)
.++........ .. .. ..-..+.+ +|.....+..++ .|..+|+.+.+.... ... .. .+
T Consensus 127 ~~~~~~~~~~~---~~--~~--~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~~~~~~--~~-----~i 186 (337)
T 1gxr_A 127 AAPTPRIKAEL---TS--SA--PACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVRQFQGH--TD-----GA 186 (337)
T ss_dssp CCC--EEEEEE---EC--SS--SCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCC--SS-----CE
T ss_pred CCCCcceeeec---cc--CC--CceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceeeeeecc--cC-----ce
Confidence 88765433222 10 00 00011222 566555555442 689999987654332 221 11 11
Q ss_pred ceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 258 SGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 258 ~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
..+... +|...++...++.+.+|.+... .....+.. .. ..-+.+.++|..++....++.+..||+++.+.
T Consensus 187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEECSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred EEEEECCCCCEEEEEecCCcEEEEECCCC------ceEeeecCCCc--eEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 033333 6777777777779999987652 22333333 22 45577778899888887778899999998876
Q ss_pred EEE
Q 044435 336 ESF 338 (378)
Q Consensus 336 ~~v 338 (378)
..+
T Consensus 259 ~~~ 261 (337)
T 1gxr_A 259 YQL 261 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 33
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.21 E-value=0.00071 Score=66.27 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHhcC-Cccccceeeecchhhhcc
Q 044435 3 TWKLPLDVIIDILIRL-PGKSLLRFRCISKSFRSL 36 (378)
Q Consensus 3 ~~~LP~dll~~IL~rL-P~~sl~r~r~VcK~W~~l 36 (378)
...||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3569999999999999 899999999999999887
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.04 E-value=0.57 Score=41.77 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=99.1
Q ss_pred ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccC
Q 044435 114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKN 193 (378)
Q Consensus 114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~ 193 (378)
.....+.|||..++++..+-....+ ......+.+.+. +.+-+.+ . ....+.+|+..++.+......
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~l~~~-~------~dg~i~vwd~~~~~~~~~~~~-- 92 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELKEH----NGQVTGVDWAPD-SNRIVTC-G------TDRNAYVWTLKGRTWKPTLVI-- 92 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECC----SSCEEEEEEETT-TTEEEEE-E------TTSCEEEEEEETTEEEEEEEC--
T ss_pred eCCCEEEEEeCCCCcEEeeeeecCC----CCcccEEEEeCC-CCEEEEE-c------CCCeEEEEECCCCeeeeeEEe--
Confidence 3566788889888853322222211 123445666663 3333322 1 124578888888776544221
Q ss_pred CCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCce-e---eeecCCCCCCCCCCcccceEEEE-CCe
Q 044435 194 FPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIET-F---YSMPMPGFGNEGGGGELSGVYVL-KGC 266 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~---~~i~lP~~~~~~~~~~~~~l~~~-~G~ 266 (378)
.. . ...-..+. -+|.....+..+. .|..+|+.+.. + ..+..+... .+..+... +|.
T Consensus 93 -~~--~--~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~~~ 155 (372)
T 1k8k_C 93 -LR--I--NRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSV 155 (372)
T ss_dssp -CC--C--SSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCS------CEEEEEECTTSS
T ss_pred -ec--C--CCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCC------CeeEEEEcCCCC
Confidence 00 0 00001122 2465555555442 57777766543 2 222222111 11033333 677
Q ss_pred EEEEEcCCCcEEEEEeccCCC-----Ccc-------eEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 267 LSLLCKYSEPWDLWVMKEYGV-----KDS-------WSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~-----~~~-------W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+.++...++.+.+|.+..... ... -..+..+........-+.+.++|..++....++.+..||+++.+
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 777777777999998642110 011 22333333311125567777888878778778889999998766
Q ss_pred EE
Q 044435 335 VE 336 (378)
Q Consensus 335 ~~ 336 (378)
..
T Consensus 236 ~~ 237 (372)
T 1k8k_C 236 AV 237 (372)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.03 E-value=0.87 Score=41.53 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=106.5
Q ss_pred eeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 103 IGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 103 ~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
++..++.++....+..+.|||..+++...+-.... ......+.+.+. +.+-+++ . ....+.+|+..+
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~-~------~dg~i~iwd~~~ 165 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDE-----STYVASVKWSHD-GSFLSVG-L------GNGLVDIYDVES 165 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT-----TCCEEEEEECTT-SSEEEEE-E------TTSCEEEEETTT
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC-----CCCEEEEEECCC-CCEEEEE-C------CCCeEEEEECcC
Confidence 33334555555567789999999998766543321 122445666663 3333332 1 124688888877
Q ss_pred CcEEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435 183 NLWRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 183 ~~W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~ 261 (378)
+.-.. .... ...-..+.++|.+...+..++ .|..+|+....-....+..+.. .+..+.
T Consensus 166 ~~~~~~~~~~----------~~~v~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~ 224 (401)
T 4aez_A 166 QTKLRTMAGH----------QARVGCLSWNRHVLSSGSRSG------AIHHHDVRIANHQIGTLQGHSS-----EVCGLA 224 (401)
T ss_dssp CCEEEEECCC----------SSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECCSS-----CEEEEE
T ss_pred CeEEEEecCC----------CCceEEEEECCCEEEEEcCCC------CEEEEecccCcceeeEEcCCCC-----CeeEEE
Confidence 64322 1111 011124555777666666553 7999998743222222211111 110233
Q ss_pred EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe---CCCeEEEEECCCCeEEE
Q 044435 262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK---NSKDHCWYHLDMHRVES 337 (378)
Q Consensus 262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~---~~~~~~~ydl~~~~~~~ 337 (378)
.. +|.+.++...++.+.+|-+... .....+.........+.+.++|..++... .++.+..||+++++...
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 33 6777777777789999988752 12233332111245577777665455543 36679999998876443
No 36
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.96 E-value=0.88 Score=41.05 Aligned_cols=197 Identities=10% Similarity=0.010 Sum_probs=97.3
Q ss_pred EeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
.....+|.+.+......++.+|+.|++.+.--..+..... .+ . .+ +. .|+... ....+..|+..
T Consensus 98 ~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-~p---~--~~---~~-~v~v~~------~~g~l~~~d~~ 161 (376)
T 3q7m_A 98 GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS-RP---V--VS---DG-LVLIHT------SNGQLQALNEA 161 (376)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS-CC---E--EE---TT-EEEEEC------TTSEEEEEETT
T ss_pred CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc-CC---E--EE---CC-EEEEEc------CCCeEEEEECC
Confidence 3445678887777777899999999875432111111100 10 1 11 12 222221 13368888887
Q ss_pred CC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCC---
Q 044435 182 VN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGG--- 253 (378)
Q Consensus 182 ~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~--- 253 (378)
++ .|+..... +. ........++..+|.+|.-... ..+.+||..+++.... ..|.......
T Consensus 162 tG~~~W~~~~~~---~~--~~~~~~~~~~~~~~~v~~g~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 162 DGAVKWTVNLDM---PS--LSLRGESAPTTAFGAAVVGGDN-------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp TCCEEEEEECCC----------CCCCCCEEETTEEEECCTT-------TEEEEEETTTCCEEEEEECCC-----------
T ss_pred CCcEEEEEeCCC---Cc--eeecCCCCcEEECCEEEEEcCC-------CEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence 65 58875433 21 1111223456678877764332 2799999876654332 3232211000
Q ss_pred CcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 254 GGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
.... .....+|.+++... .+.+..+..+. .+..|... ... .....+ +++.|++...+..++++|.+++
T Consensus 230 ~~~~-~p~~~~~~v~~~~~-~g~l~~~d~~t--G~~~w~~~----~~~--~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 230 DVDT-TPVVVNGVVFALAY-NGNLTALDLRS--GQIMWKRE----LGS--VNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp CCCC-CCEEETTEEEEECT-TSCEEEEETTT--CCEEEEEC----CCC--EEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred ccCC-CcEEECCEEEEEec-CcEEEEEECCC--CcEEeecc----CCC--CCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 0011 22345677766543 22333322222 22346532 111 111222 3555888877777999999998
Q ss_pred eEEEE
Q 044435 334 RVESF 338 (378)
Q Consensus 334 ~~~~v 338 (378)
+..+-
T Consensus 298 ~~~w~ 302 (376)
T 3q7m_A 298 VTLWT 302 (376)
T ss_dssp CEEEE
T ss_pred cEEEe
Confidence 86554
No 37
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.92 E-value=0.24 Score=42.28 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=73.8
Q ss_pred eeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCC
Q 044435 208 AFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYG 286 (378)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~ 286 (378)
.+.+|.+|.-++..+. ..|..+|+.+++- ..+++|.... .. .++..+++|+++...+.. +|+.+-
T Consensus 27 ~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~f-----ge-Gi~~~~~~ly~ltw~~~~--v~v~D~-- 92 (243)
T 3mbr_X 27 FYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPYF-----GA-GIVAWRDRLIQLTWRNHE--GFVYDL-- 92 (243)
T ss_dssp EEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTCC-----EE-EEEEETTEEEEEESSSSE--EEEEET--
T ss_pred EEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCcc-----ee-EEEEeCCEEEEEEeeCCE--EEEEEC--
Confidence 3446777776665432 3899999998766 4458876432 22 567778999999765554 444543
Q ss_pred CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE-EEEeE
Q 044435 287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV-ESFLV 340 (378)
Q Consensus 287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~-~~v~~ 340 (378)
.+-.++.+++. .. ..++..+|+.+++..++.++..+|++|.+. +.|.+
T Consensus 93 --~tl~~~~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 93 --ATLTPRARFRYPGE----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp --TTTEEEEEEECSSC----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred --CcCcEEEEEeCCCC----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 23556667776 32 345556777677777777899999999764 44443
No 38
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.79 E-value=0.82 Score=39.33 Aligned_cols=201 Identities=11% Similarity=0.064 Sum_probs=106.1
Q ss_pred eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|.+.+.+ ....+.++|+..+....++....... ......++.+++..+...|.. . .....+.+|+....
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~-~~~~p~~i~~~~~~g~l~v~~--~----~~~~~i~~~d~~g~ 110 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDS-QLLYPNRVAVVRNSGDIIVTE--R----SPTHQIQIYNQYGQ 110 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTT-CBSSEEEEEEETTTTEEEEEE--C----GGGCEEEEECTTSC
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcc-cccCceEEEEEcCCCeEEEEc--C----CCCCEEEEECCCCc
Confidence 3456666554 45678899988665555553221110 012344666654444332221 1 11346778885433
Q ss_pred cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~ 261 (378)
.-+.+... .. ....++.+ +|.+|+..... ..|..||...+....+..+.... .+..++
T Consensus 111 ~~~~~~~~---~~------~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~-----~p~~i~ 170 (286)
T 1q7f_A 111 FVRKFGAT---IL------QHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLE-----FPNGVV 170 (286)
T ss_dssp EEEEECTT---TC------SCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCS-----SEEEEE
T ss_pred EEEEecCc---cC------CCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCccC-----CcEEEE
Confidence 32333211 00 01123333 68877655433 37999998776666664432221 111344
Q ss_pred EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeC-CC-eEEEEECCCCeEE
Q 044435 262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKN-SK-DHCWYHLDMHRVE 336 (378)
Q Consensus 262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~-~~-~~~~ydl~~~~~~ 336 (378)
.. +|+|++.......+.+|..+. .. +..+.. ......-+++.++|. +++... +. .+..||.+++.++
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~~g-----~~--~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~~~ 242 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNYEG-----QY--LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLIS 242 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETTC-----CE--EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEE
T ss_pred ECCCCCEEEEECCCCEEEEEcCCC-----CE--EEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCEEE
Confidence 44 689888776666777775432 11 223332 222244566667887 555543 43 7999999888777
Q ss_pred EEeE
Q 044435 337 SFLV 340 (378)
Q Consensus 337 ~v~~ 340 (378)
.+..
T Consensus 243 ~~~~ 246 (286)
T 1q7f_A 243 ALES 246 (286)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 7754
No 39
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.67 E-value=1.2 Score=40.21 Aligned_cols=191 Identities=12% Similarity=0.035 Sum_probs=103.4
Q ss_pred Eeeeccce-EEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435 102 IIGSCNGL-LALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG 179 (378)
Q Consensus 102 ~~~s~~GL-l~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys 179 (378)
+.-+.+|- +++.. ....+.+||+.+++....-.... ....+.+++... +-++. . .....+.+|+
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~v~~~~~spdg~-~l~~~-~-----~~~~~v~v~d 102 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------SPQGVAVSPDGK-QVYVT-N-----MASSTLSVID 102 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------SEEEEEECTTSS-EEEEE-E-----TTTTEEEEEE
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------CccceEECCCCC-EEEEE-E-----CCCCEEEEEE
Confidence 33344553 43443 56678999999988654432221 233566666433 22222 1 1234688999
Q ss_pred cCCCcEEecCcccCCCccccccccCCccee--eCCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCc
Q 044435 180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGG 255 (378)
Q Consensus 180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~ 255 (378)
..++.-...-.. .. . ..++. -+|. +|..+..+ ..|..+|+.+.+.... ......
T Consensus 103 ~~~~~~~~~~~~---~~--~-----~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~------ 160 (391)
T 1l0q_A 103 TTSNTVAGTVKT---GK--S-----PLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGRSP------ 160 (391)
T ss_dssp TTTTEEEEEEEC---SS--S-----EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCSSE------
T ss_pred CCCCeEEEEEeC---CC--C-----cceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCCCc------
Confidence 888754322111 00 0 11222 2465 44444333 3799999988766443 322111
Q ss_pred ccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe---CCCeEEEEEC
Q 044435 256 ELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK---NSKDHCWYHL 330 (378)
Q Consensus 256 ~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~---~~~~~~~ydl 330 (378)
. .+... +| .|++....++.+.+|-+.. ......+.... ...-+++.++|+.+++.. .+..+..||+
T Consensus 161 -~-~~~~~~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 161 -K-GIAVTPDGTKVYVANFDSMSISVIDTVT------NSVIDTVKVEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp -E-EEEECTTSSEEEEEETTTTEEEEEETTT------TEEEEEEECSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred -c-eEEECCCCCEEEEEeCCCCEEEEEECCC------CeEEEEEecCC-CccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 1 33333 45 4555555556899997764 22333333311 244567777888777766 4567999999
Q ss_pred CCCeEEE
Q 044435 331 DMHRVES 337 (378)
Q Consensus 331 ~~~~~~~ 337 (378)
++++...
T Consensus 232 ~~~~~~~ 238 (391)
T 1l0q_A 232 GTNKITA 238 (391)
T ss_dssp TTTEEEE
T ss_pred CCCeEEE
Confidence 9886543
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.58 E-value=1 Score=40.77 Aligned_cols=192 Identities=6% Similarity=-0.013 Sum_probs=101.0
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
+.+|.++.......+.+||..+++....-... ......+.+.+... +-+++ . ....+.+|+..++.
T Consensus 215 ~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~l~~~-~------~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH------HGPISVLEFNDTNK-LLLSA-S------DDGTLRIWHGGNGN 280 (425)
T ss_dssp EETTEEEEECGGGCEEEEETTCSSCSEEECCC------SSCEEEEEEETTTT-EEEEE-E------TTSCEEEECSSSBS
T ss_pred cCCCEEEEEcCCCeEEEEEcCCCceeeeeccC------CCceEEEEECCCCC-EEEEE-c------CCCEEEEEECCCCc
Confidence 34566666666778899998886543221111 12234566666443 22222 2 12357788776542
Q ss_pred EEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE
Q 044435 185 WRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 185 W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~ 262 (378)
-.. .... .. .. ..-...-+| ....+..+ ..|..||+.+.+.... ..... .+..+..
T Consensus 281 ~~~~~~~~---~~--~i---~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~ 338 (425)
T 1r5m_A 281 SQNCFYGH---SQ--SI---VSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSIVDGV-------PIFAGRI 338 (425)
T ss_dssp CSEEECCC---SS--CE---EEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEECTTC-------CEEEEEE
T ss_pred cceEecCC---Cc--cE---EEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecccCCc-------cEEEEEE
Confidence 111 1100 00 00 000111255 44444433 2799999987664333 22111 1102333
Q ss_pred E-CCeEEEEEcCCCcEEEEEeccCCC-C--------c-----ceEEEEEecC-CCc-eeEEEEEEeCCCEEEEEeCCCeE
Q 044435 263 L-KGCLSLLCKYSEPWDLWVMKEYGV-K--------D-----SWSKLFTMNE-NGY-RVIPLAFSSRGDKVLFQKNSKDH 325 (378)
Q Consensus 263 ~-~G~L~~~~~~~~~l~iW~l~~~~~-~--------~-----~W~~~~~i~~-~~~-~~~~~~~~~~g~~v~~~~~~~~~ 325 (378)
. +|.+.++...++.+.+|.+..... . . .+..+..+.. ... ...-+.+.++|..++....++.+
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 3 577777777777999999875320 0 0 1124444544 221 36667788889877778778789
Q ss_pred EEEECCC
Q 044435 326 CWYHLDM 332 (378)
Q Consensus 326 ~~ydl~~ 332 (378)
..||+++
T Consensus 419 ~iw~~~g 425 (425)
T 1r5m_A 419 SVVAIPG 425 (425)
T ss_dssp EEEECCC
T ss_pred EEEeecC
Confidence 9999863
No 41
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.56 E-value=1.4 Score=40.33 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=105.9
Q ss_pred eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|.+++.. ....+.+||+.+++....-... ......+.+++..+ +-++. .. ....+.+|+.+++
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~l~~~-~~-----~~~~i~~~d~~~~ 244 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLT------GKWSKILLYDPIRD-LVYCS-NW-----ISEDISVIDRKTK 244 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS------SSSEEEEEEETTTT-EEEEE-ET-----TTTEEEEEETTTT
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCC------CCCeeEEEEcCCCC-EEEEE-ec-----CCCcEEEEECCCC
Confidence 4466665554 4567899999887654321111 11234566666543 22222 11 1246888998877
Q ss_pred cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcc--cceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEM--INDLILAFDLNIETFYSM-PMPGFGNEGGGGELS 258 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~ 258 (378)
.....-.. .. . ..++.+ +|...+.+....... ....|..||+.+++.... ..+... .
T Consensus 245 ~~~~~~~~---~~--~-----~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------~- 306 (433)
T 3bws_A 245 LEIRKTDK---IG--L-----PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK-------R- 306 (433)
T ss_dssp EEEEECCC---CS--E-----EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE-------E-
T ss_pred cEEEEecC---CC--C-----ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc-------c-
Confidence 54332111 00 0 112222 565555554321100 113789999987755433 222111 1
Q ss_pred eEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-------------
Q 044435 259 GVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS------------- 322 (378)
Q Consensus 259 ~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~------------- 322 (378)
.+... +| .|++....++.+.+|.++. ......++. .. ..-+++.++|..+++....
T Consensus 307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMCCSKIEVYDLKE------KKVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEETTT------TEEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred eEEECCCCCEEEEEecCCCEEEEEECCC------CcEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 22332 45 5667666667999998874 233344444 33 4567778889877776653
Q ss_pred --CeEEEEECCCCeEEEE
Q 044435 323 --KDHCWYHLDMHRVESF 338 (378)
Q Consensus 323 --~~~~~ydl~~~~~~~v 338 (378)
+.++.||+++.+....
T Consensus 379 ~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp SCCEEEEEETTTTEEEEE
T ss_pred cceEEEEEECCCCcEEEE
Confidence 3799999999876554
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.52 E-value=0.34 Score=44.98 Aligned_cols=197 Identities=11% Similarity=0.096 Sum_probs=102.1
Q ss_pred cc-eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435 107 NG-LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW 185 (378)
Q Consensus 107 ~G-Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W 185 (378)
++ +|.....+..+.|||..+++...+-....+ ......+.|.|..+.+-+.+ . ....+.+++.+++.-
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH----~~~V~~l~f~p~~~~~l~s~-s------~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA----GGSITGLKFNPLNTNQFYAS-S------MEGTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS----SCCCCEEEECSSCTTEEEEE-C------SSSCEEEEETTSCEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC----CCCEEEEEEeCCCCCEEEEE-e------CCCEEEEeeccCCce
Confidence 44 454555677899999988765433222111 11233566776555543322 1 123577888877655
Q ss_pred EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-C
Q 044435 186 RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-K 264 (378)
Q Consensus 186 ~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~ 264 (378)
+..... .. .......-...-+|.+...+..++ .|..+|+..+....+. .+. ..+..+... +
T Consensus 200 ~~~~~~---~~--~~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~--~h~-----~~v~~v~~~p~ 261 (435)
T 4e54_B 200 RVFASS---DT--INIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLR--MHK-----KKVTHVALNPC 261 (435)
T ss_dssp EEEECC---SS--CSCCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSB--CCS-----SCEEEEEECTT
T ss_pred eEEecc---CC--CCccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEe--ccc-----ceEEeeeecCC
Confidence 443221 00 000001111223566666655443 6888998765433221 111 111123332 4
Q ss_pred C-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 265 G-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 265 G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
| .+.+....++.+.||-+.......... . .......+.-+++.++|..++....++.+..||+++...
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--~-~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFL--Y-SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCS--B-CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred CceEEEEecCcceeeEEecccccccceEE--E-eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 4 455566666789999876532211110 0 000111244456677888777777788899999987653
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.39 E-value=2.5 Score=42.30 Aligned_cols=192 Identities=9% Similarity=-0.041 Sum_probs=103.4
Q ss_pred eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|- |.....+..+.|||..+++....-... ......+.+.+... + ++... ....+.+|+..++
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~v~~~~~s~~~~-~-l~~~~------~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYIRSIAVHPTKP-Y-VLSGS------DDLTVKLWNWENN 129 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSS-E-EEEEE------TTSEEEEEEGGGT
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCCEEEEEEeCCCC-E-EEEEc------CCCEEEEEECCCC
Confidence 33444 445556778999999888765332211 11233555655432 2 22222 1346788887665
Q ss_pred -cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435 184 -LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELS 258 (378)
Q Consensus 184 -~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~ 258 (378)
..... . . .....-.++.+ +|.....+..++ .|..+|+.+.+.... ..+..... .
T Consensus 130 ~~~~~~--~---~----~~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~~~~~~~v-----~- 188 (814)
T 3mkq_A 130 WALEQT--F---E----GHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLTTGQERGV-----N- 188 (814)
T ss_dssp SEEEEE--E---E----CCSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEECCCTTCC-----C-
T ss_pred ceEEEE--E---c----CCCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEecCCCCCE-----E-
Confidence 22211 1 0 00000112333 455555555443 799999876543222 22211110 0
Q ss_pred eEEEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 259 GVYVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 259 ~l~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
.+... +|.+.++...++.+.+|.+.. ......+.........+.++++|..++....++.+..||+.+.+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 189 YVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp EEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 23332 677777777777999997764 223334443111255677888898777777777899999998664
Q ss_pred EE
Q 044435 336 ES 337 (378)
Q Consensus 336 ~~ 337 (378)
..
T Consensus 263 ~~ 264 (814)
T 3mkq_A 263 EK 264 (814)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.37 E-value=1.4 Score=39.47 Aligned_cols=198 Identities=9% Similarity=-0.026 Sum_probs=101.2
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
+.++.++....+..+.|||..+++...........+ ......+.|.+.. .+-+ ... ....+.+++..++.
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H--~~~V~~v~~spdg-~~l~-sgs------~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEH--DDIVSTVSVLSSG-TQAV-SGS------KDICIKVWDLAQQV 160 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECC--SSCEEEEEECTTS-SEEE-EEE------TTSCEEEEETTTTE
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCC--CCCEEEEEECCCC-CEEE-EEe------CCCeEEEEECCCCc
Confidence 345666666667788999999887544332211111 1223456665543 3322 222 12457888887653
Q ss_pred EEecCcccCCCccccccccCCccee--eCCe-EEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceE
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAF--VNGA-LHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l 260 (378)
=.. .. .. ... .-.++. -+|. +...+..+ ..|..+|+.+.+.. .+..+.... ... .+
T Consensus 161 ~~~--~~---~~--h~~--~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~----~~~-~~ 220 (344)
T 4gqb_B 161 VLS--SY---RA--HAA--QVTCVAASPHKDSVFLSCSED------NRILLWDTRCPKPASQIGCSAPGY----LPT-SL 220 (344)
T ss_dssp EEE--EE---CC--CSS--CEEEEEECSSCTTEEEEEETT------SCEEEEETTSSSCEEECC----CC----CEE-EE
T ss_pred EEE--EE---cC--cCC--ceEEEEecCCCCCceeeeccc------cccccccccccceeeeeecceeec----cce-ee
Confidence 211 11 00 000 001122 2343 33333333 26889999876543 233222211 111 23
Q ss_pred EEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEEE
Q 044435 261 YVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 261 ~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
... ++.+.+....++.+.||-+... ..+..+........-+++.++|. +|+-...++.+.+||.++++..+
T Consensus 221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp EECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred eecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 332 4667777777779999977642 22233333111255677788875 44556667779999999998655
Q ss_pred E
Q 044435 338 F 338 (378)
Q Consensus 338 v 338 (378)
+
T Consensus 295 ~ 295 (344)
T 4gqb_B 295 S 295 (344)
T ss_dssp E
T ss_pred E
Confidence 4
No 45
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.33 E-value=0.22 Score=42.92 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=71.1
Q ss_pred eeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC
Q 044435 209 FVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~ 287 (378)
+.+|.+|.-++..+. ..|..+|+.+++- ..+++|... +.. .++..+++|+++...+..+ |+.|-
T Consensus 50 ~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~-----Fge-Git~~g~~ly~ltw~~~~v--~v~D~--- 114 (262)
T 3nol_A 50 YRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRY-----FGE-GISDWKDKIVGLTWKNGLG--FVWNI--- 114 (262)
T ss_dssp EETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTC-----CEE-EEEEETTEEEEEESSSSEE--EEEET---
T ss_pred EECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCcc-----cee-EEEEeCCEEEEEEeeCCEE--EEEEC---
Confidence 347888887765432 3799999998766 445777532 222 4677789999997655544 44443
Q ss_pred CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe-EEEEeE
Q 044435 288 KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR-VESFLV 340 (378)
Q Consensus 288 ~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~-~~~v~~ 340 (378)
.+-.++.+|+. .. ..++..+|+.+++..+..++..+|++|.+ .+.|..
T Consensus 115 -~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 115 -RNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp -TTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred -ccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 23445666665 21 24555677766666656679999999866 444433
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.31 E-value=0.34 Score=43.62 Aligned_cols=189 Identities=10% Similarity=0.010 Sum_probs=91.5
Q ss_pred cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc-EEecCcccC
Q 044435 115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL-WRRIKNIKN 193 (378)
Q Consensus 115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~-W~~~~~~~~ 193 (378)
.+..+.|||..++.+..+-....+ ......+.+.+.. .+-+.+ . ....+.+|+..++. |......
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~-~~l~s~-s------~d~~v~vwd~~~~~~~~~~~~~-- 96 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDH----DKIVTCVDWAPKS-NRIVTC-S------QDRNAYVYEKRPDGTWKQTLVL-- 96 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCC----SSCEEEEEECTTT-CCEEEE-E------TTSSEEEC------CCCCEEEC--
T ss_pred CCCEEEEEEccCCceEEEEEEecC----CceEEEEEEeCCC-CEEEEE-e------CCCeEEEEEcCCCCceeeeeEe--
Confidence 556688899888865444433322 2234456666653 332222 2 12357788877765 4433221
Q ss_pred CCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce----eeeecCCCCCCCCCCcccceEEEE-CCe
Q 044435 194 FPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET----FYSMPMPGFGNEGGGGELSGVYVL-KGC 266 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~----~~~i~lP~~~~~~~~~~~~~l~~~-~G~ 266 (378)
.. . ...-..+.+ +|.....+..+. .|..+|+.+++ ...+.-|... .+..+... +|+
T Consensus 97 -~~--~--~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~ 159 (377)
T 3dwl_C 97 -LR--L--NRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPNNV 159 (377)
T ss_dssp -CC--C--SSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECSSCCS------CEEEEEECTTSS
T ss_pred -cc--c--CCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeecccCC------CeEEEEEcCCCC
Confidence 00 0 000011222 455555554432 68888888765 2333322111 11133333 677
Q ss_pred EEEEEcCCCcEEEEEeccCCC-----Ccce-------EEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 267 LSLLCKYSEPWDLWVMKEYGV-----KDSW-------SKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~-----~~~W-------~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+.+....++.+.+|.+...+. ...| .....+... ....-+++.++|..++....++.+..||+++++
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 777777777999999853210 1112 222222111 125567778888877777778789999988876
Q ss_pred E
Q 044435 335 V 335 (378)
Q Consensus 335 ~ 335 (378)
.
T Consensus 239 ~ 239 (377)
T 3dwl_C 239 Q 239 (377)
T ss_dssp S
T ss_pred C
Confidence 4
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.21 E-value=1.4 Score=38.35 Aligned_cols=191 Identities=9% Similarity=0.045 Sum_probs=104.4
Q ss_pred eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|- ++.......+.+||..+++.......... ......+.+.+. +.+-+++ . ....+.+|+.+++
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~-~------~dg~v~~~d~~~~ 173 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS----APACYALAISPD-SKVCFSC-C------SDGNIAVWDLHNQ 173 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS----SSCEEEEEECTT-SSEEEEE-E------TTSCEEEEETTTT
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC----CCceEEEEECCC-CCEEEEE-e------CCCcEEEEeCCCC
Confidence 33554 44445667789999988764332222211 112345666553 2332222 1 1235888888776
Q ss_pred cEEec-CcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccce
Q 044435 184 LWRRI-KNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSG 259 (378)
Q Consensus 184 ~W~~~-~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~ 259 (378)
..... ... .. . -..+.+ +|.....+..++ .|..||+.+.+-... ..+... . .
T Consensus 174 ~~~~~~~~~---~~--~-----i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~v-------~-~ 229 (337)
T 1gxr_A 174 TLVRQFQGH---TD--G-----ASCIDISNDGTKLWTGGLDN------TVRSWDLREGRQLQQHDFTSQI-------F-S 229 (337)
T ss_dssp EEEEEECCC---SS--C-----EEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEECSSCE-------E-E
T ss_pred ceeeeeecc---cC--c-----eEEEEECCCCCEEEEEecCC------cEEEEECCCCceEeeecCCCce-------E-E
Confidence 43221 111 00 0 112222 566666655442 799999987654332 332211 1 3
Q ss_pred EEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 260 VYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 260 l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+... +|.+.++...++.+.+|.+.... ...+........-+.+.++|..++....++.+..||+++++....
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 3332 67777777667799999887521 112222111255677788899777777788899999999876643
No 48
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.07 E-value=1.6 Score=38.02 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=99.6
Q ss_pred eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcc
Q 044435 113 KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNI 191 (378)
Q Consensus 113 ~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~ 191 (378)
...+..+.|||..+++....-... ......+.+.+.. .+-+.+ . ....+.+|+..++.-.. +...
T Consensus 41 ~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~s~-~------~d~~i~vwd~~~~~~~~~~~~~ 106 (312)
T 4ery_A 41 SSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDS-NLLVSA-S------DDKTLKIWDVSSGKCLKTLKGH 106 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTTS-SEEEEE-E------TTSEEEEEETTTCCEEEEEECC
T ss_pred eeCCCeEEEEeCCCcccchhhccC------CCceEEEEEcCCC-CEEEEE-C------CCCEEEEEECCCCcEEEEEcCC
Confidence 345566788888887765432211 2224456666543 332222 2 13468888887653211 1100
Q ss_pred cCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEE
Q 044435 192 KNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLL 270 (378)
Q Consensus 192 ~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~ 270 (378)
.. .. ..-...-+|.+...+..+. .|..+|+.+.+.... ++.+.. .+..+... +|.+.+.
T Consensus 107 ---~~--~v---~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~-~~~~~~-----~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 107 ---SN--YV---FCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKT-LPAHSD-----PVSAVHFNRDGSLIVS 166 (312)
T ss_dssp ---SS--CE---EEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEE-ECCCSS-----CEEEEEECTTSSEEEE
T ss_pred ---CC--CE---EEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEE-ecCCCC-----cEEEEEEcCCCCEEEE
Confidence 00 00 0001111444444444432 689999987654322 222111 11023332 6777777
Q ss_pred EcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 271 CKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 271 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
...++.+.+|.+... .....+.. .......+.+.++|..++....++.+..||+++.+....
T Consensus 167 ~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 167 SSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp EETTSCEEEEETTTC------CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EeCCCcEEEEECCCC------ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 777779999987652 12233322 222355677888999888888788899999998875443
No 49
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.06 E-value=1.7 Score=38.37 Aligned_cols=192 Identities=9% Similarity=0.025 Sum_probs=101.5
Q ss_pred cceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435 107 NGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW 185 (378)
Q Consensus 107 ~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W 185 (378)
+|.+++. ..+..+.+||..+++....-... ......+.+.|.. .+-+.+ . ....+.+|+.+++.-
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~------~~~~~~~~~spdg-~~l~~g-~------~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAG------PVDAWTLAFSPDS-QYLATG-T------HVGKVNIFGVESGKK 156 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECC------TTCCCCEEECTTS-SEEEEE-C------TTSEEEEEETTTCSE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCC------CccEEEEEECCCC-CEEEEE-c------CCCcEEEEEcCCCce
Confidence 4443333 45677889999887754321111 1112234555543 222221 1 234677888776532
Q ss_pred EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-C
Q 044435 186 RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-K 264 (378)
Q Consensus 186 ~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~ 264 (378)
...-.. .. . ....-...-+|.....+..+. .|..+|+.+.+.... +..+.. .+..+... +
T Consensus 157 ~~~~~~---~~--~--~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~-~~~h~~-----~v~~l~~spd 217 (321)
T 3ow8_A 157 EYSLDT---RG--K--FILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHT-LEGHAM-----PIRSLTFSPD 217 (321)
T ss_dssp EEEEEC---SS--S--CEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE-ECCCSS-----CCCEEEECTT
T ss_pred eEEecC---CC--c--eEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEE-EcccCC-----ceeEEEEcCC
Confidence 211000 00 0 000001112566555555442 688999987754322 111111 11033443 6
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
|.+.+....++.+.||.+... .....+........-+++.++|..++....++.+..||+++++...
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHA------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCc------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 777777777779999988752 2233444311125567788889877777778889999999887543
No 50
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.05 E-value=1.6 Score=38.13 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.+...+..+. .|..+|+.+.+.... ..... .. .+....+...++...++.+.||.++... .
T Consensus 226 ~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~~~~~-------v~-~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~ 289 (340)
T 4aow_A 226 DGSLCASGGKDG------QAMLWDLNEGKHLYTLDGGDI-------IN-ALCFSPNRYWLCAATGPSIKIWDLEGKI--I 289 (340)
T ss_dssp TSSEEEEEETTC------EEEEEETTTTEEEEEEECSSC-------EE-EEEECSSSSEEEEEETTEEEEEETTTTE--E
T ss_pred CCCEEEEEeCCC------eEEEEEeccCceeeeecCCce-------EE-eeecCCCCceeeccCCCEEEEEECCCCe--E
Confidence 566655555543 788899887654322 22211 11 2333333333444445688888776421 1
Q ss_pred ceEEEEEe-----cCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 290 SWSKLFTM-----NENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 290 ~W~~~~~i-----~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
.+...... ........-+++.++|..++-...++.+..||++|++
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 11111000 0011224557778899977777778889999998864
No 51
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.04 E-value=1.6 Score=38.11 Aligned_cols=192 Identities=9% Similarity=0.032 Sum_probs=102.0
Q ss_pred cceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435 107 NGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW 185 (378)
Q Consensus 107 ~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W 185 (378)
.+.+.+.. ....+.++|+.|++....-..+. . .. .+.+++..+ +-++. .. ....+.+++..++.-
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----~-~~-~~~~s~dg~-~l~~~-~~-----~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY-----D-FV-DTAITSDCS-NVVVT-SD-----FCQTLVQIETQLEPP 74 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-----C-EE-EEEECSSSC-EEEEE-ES-----TTCEEEEEECSSSSC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccC-----C-cc-eEEEcCCCC-EEEEE-eC-----CCCeEEEEECCCCce
Confidence 34444443 45678899999988755433221 1 12 566666544 22222 11 123788888887653
Q ss_pred --EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEE
Q 044435 186 --RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 186 --~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~ 262 (378)
+..... .-|. . .-.+.-+|...+....... ...|..+|+.+.+... ++..... . .++.
T Consensus 75 ~~~~~~~~-~~~~--~-----~~~~s~dg~~l~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~-------~-~~~~ 135 (331)
T 3u4y_A 75 KVVAIQEG-QSSM--A-----DVDITPDDQFAVTVTGLNH---PFNMQSYSFLKNKFISTIPIPYDA-------V-GIAI 135 (331)
T ss_dssp EEEEEEEC-SSCC--C-----CEEECTTSSEEEECCCSSS---SCEEEEEETTTTEEEEEEECCTTE-------E-EEEE
T ss_pred eEEecccC-CCCc--c-----ceEECCCCCEEEEecCCCC---cccEEEEECCCCCeEEEEECCCCc-------c-ceEE
Confidence 222111 0011 0 0122234553334333211 1269999998776543 3332211 1 3344
Q ss_pred E-CCe-EEEEEcCCCc-EEEEEeccCCCCcceEE-EEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeE
Q 044435 263 L-KGC-LSLLCKYSEP-WDLWVMKEYGVKDSWSK-LFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRV 335 (378)
Q Consensus 263 ~-~G~-L~~~~~~~~~-l~iW~l~~~~~~~~W~~-~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~ 335 (378)
. +|+ |++....... +.+|.++..+. .... ...+.. .. ..-+.+.++|+.+++... +..+..||+++++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~--~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGV--LFDTGQEFISGGTR--PFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCC--EEEEEEEEECSSSS--EEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCc--EeecCCccccCCCC--ccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 3 564 7777666566 99999986431 1111 222332 22 556778889986666653 55799999998874
No 52
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.81 E-value=1.6 Score=36.89 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=97.3
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
..+|.+.+.+....++++|+.++....++... .....++.+|+.. ...| .. .....+.+|+.++..
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~------~~~p~~i~~~~~g-~l~v---~~----~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG------LNYPEGLAVDTQG-AVYV---AD----RGNNRVVKLAAGSKT 140 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCCEECCCCS------CSSEEEEEECTTC-CEEE---EE----GGGTEEEEECTTCCS
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceEeeeecCC------cCCCcceEECCCC-CEEE---EE----CCCCEEEEEECCCce
Confidence 34666655555667899999887766554322 1123467777643 2222 11 112356667655544
Q ss_pred EEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~ 262 (378)
....... .. ....++.+ +|.+|+..... ..|..||..+.......... .. .+..++.
T Consensus 141 ~~~~~~~-------~~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~-~~-----~p~~i~~ 199 (270)
T 1rwi_B 141 QTVLPFT-------GL--NDPDGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTD-IT-----APWGIAV 199 (270)
T ss_dssp CEECCCC-------SC--CSCCCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSS-CC-----SEEEEEE
T ss_pred eEeeccc-------cC--CCceeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccC-CC-----CceEEEE
Confidence 3322111 10 11223443 58877765543 27999999876654432211 11 1113444
Q ss_pred E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe
Q 044435 263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR 334 (378)
Q Consensus 263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~ 334 (378)
. +|.|++.......+.+|..+. . .... +.. ......-+++.++|. +++.. .+..+..|++...+
T Consensus 200 d~~g~l~v~~~~~~~v~~~~~~~--~-~~~~----~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 200 DEAGTVYVTEHNTNQVVKLLAGS--T-TSTV----LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEETTTSCEEEECTTC--S-CCEE----CCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCEEEEECCCCcEEEEcCCC--C-ccee----eccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcc
Confidence 3 578888887666766665432 1 1111 222 222244566666787 55543 45568888876554
No 53
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.65 E-value=2.1 Score=37.60 Aligned_cols=204 Identities=10% Similarity=-0.028 Sum_probs=104.6
Q ss_pred eeeccceEEEee-cCCcEEEEcCcccceee-cCCCCCC--CCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEE
Q 044435 103 IGSCNGLLALKN-YPKGIILLNPLTKKHRV-LPKFYRD--LHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVY 178 (378)
Q Consensus 103 ~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~-LP~~~~~--~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vy 178 (378)
++..+..+.+.. ....+.++|+.+++... ++..... .........++.+++..+...+ .-. .....+.++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~-----~~~~~i~~~ 169 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI-SGI-----GKESVIWVV 169 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE-EEE-----SSSCEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE-Eec-----CCCceEEEE
Confidence 333344455544 45689999999987643 3321111 0000112345777776543222 211 113468888
Q ss_pred EcCCCcEEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcc
Q 044435 179 GLKVNLWRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGE 256 (378)
Q Consensus 179 ss~~~~W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~ 256 (378)
+..++.=.. ++.. .. ....-.+.-+|...+++..+ ..|..+|+.+.+... +..+...... ..
T Consensus 170 d~~~~~~~~~~~~~-------~~-~~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~--~~ 233 (353)
T 3vgz_A 170 DGGNIKLKTAIQNT-------GK-MSTGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKEH--FF 233 (353)
T ss_dssp ETTTTEEEEEECCC-------CT-TCCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSCC--CE
T ss_pred cCCCCceEEEecCC-------CC-ccceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCCc--cc
Confidence 887753221 1101 10 00111222356644444433 278899998876643 3553221111 11
Q ss_pred cceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCC
Q 044435 257 LSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDM 332 (378)
Q Consensus 257 ~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~ 332 (378)
. .+... +| .|++.......+.+|-++. ......++. .. .-+.+.++|+.+++.. .++.+..||+++
T Consensus 234 ~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 234 I-NISLDTARQRAFITDSKAAEVLVVDTRN------GNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp E-EEEEETTTTEEEEEESSSSEEEEEETTT------CCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred c-eEEECCCCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 1 23444 45 5666655445777776653 223334444 21 2367778898777766 356799999998
Q ss_pred CeEEEE
Q 044435 333 HRVESF 338 (378)
Q Consensus 333 ~~~~~v 338 (378)
++....
T Consensus 304 ~~~~~~ 309 (353)
T 3vgz_A 304 YKVVKT 309 (353)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 886544
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.56 E-value=2.6 Score=38.20 Aligned_cols=194 Identities=9% Similarity=0.018 Sum_probs=105.1
Q ss_pred ccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
.+|- |+.......+.|||..+++....-... ......+.+.+.. .+-+ ... ....+.+|+..++.
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~-s~s------~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAH------VSEITKLKFFPSG-EALI-SSS------QDMQLKIWSVKDGS 172 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETTSS------SSCEEEEEECTTS-SEEE-EEE------TTSEEEEEETTTCC
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecccc------cCccEEEEECCCC-CEEE-EEe------CCCeEEEEeCCCCc
Confidence 3444 444456678999999988876553222 1234466676643 3222 222 13468888887642
Q ss_pred E-EecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceE
Q 044435 185 W-RRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 185 W-~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l 260 (378)
= +.+... .. . -.++.+ +|.....+..+. .|..+|+.+.+... +..+..... ... .+
T Consensus 173 ~~~~~~~h---~~--~-----v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~---~v~-~~ 232 (420)
T 3vl1_A 173 NPRTLIGH---RA--T-----VTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHD---GVN-SI 232 (420)
T ss_dssp CCEEEECC---SS--C-----EEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTC---CEE-EE
T ss_pred CceEEcCC---CC--c-----EEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCC---Ccc-EE
Confidence 1 111100 00 0 011222 455555554442 68889988765433 232211100 000 11
Q ss_pred E----------------------EECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EE
Q 044435 261 Y----------------------VLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KV 316 (378)
Q Consensus 261 ~----------------------~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v 316 (378)
. ..+|++.++...++.+.+|.+... .....+.. ......-+.+.++|. .+
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------EQTIQLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------CEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------ceeEEcccccCCCceeEEEeCCCCCEE
Confidence 1 126777777777779999988652 12333333 222356677788887 78
Q ss_pred EEEeCCCeEEEEECCCCe--EEEEe
Q 044435 317 LFQKNSKDHCWYHLDMHR--VESFL 339 (378)
Q Consensus 317 ~~~~~~~~~~~ydl~~~~--~~~v~ 339 (378)
+....++.+..||+++.+ +..+.
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEE
T ss_pred EEEeCCCeEEEEEcCCCcCchhhhh
Confidence 888888889999998864 44443
No 55
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.46 E-value=2.6 Score=37.80 Aligned_cols=189 Identities=12% Similarity=0.044 Sum_probs=102.5
Q ss_pred eccce-EEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 105 SCNGL-LALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 105 s~~GL-l~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
+.+|- |.+.. ....+.++|+.+++....-.... ....+.+++... +-++.. .....+.+++..+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~-~l~~~~------~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-------SPLGLALSPDGK-KLYVTN------NGDKTVSVINTVT 147 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-------SEEEEEECTTSS-EEEEEE------TTTTEEEEEETTT
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-------CcceEEECCCCC-EEEEEe------CCCCEEEEEECCC
Confidence 33443 44444 45779999999988655432221 234566665433 222221 1234788899887
Q ss_pred CcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccce
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSG 259 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~ 259 (378)
+.....-.. .. ....+. -+|...++..... ..|..+|+.+.+.... ..... .. .
T Consensus 148 ~~~~~~~~~-------~~---~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-------~~-~ 204 (391)
T 1l0q_A 148 KAVINTVSV-------GR---SPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKVEAA-------PS-G 204 (391)
T ss_dssp TEEEEEEEC-------CS---SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSSE-------EE-E
T ss_pred CcEEEEEec-------CC---CcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEecCCC-------cc-c
Confidence 755432111 00 001222 2465444443322 2799999988765433 32211 11 2
Q ss_pred EEEE-CCe-EEEEEc--CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCC
Q 044435 260 VYVL-KGC-LSLLCK--YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMH 333 (378)
Q Consensus 260 l~~~-~G~-L~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~ 333 (378)
+... +|+ |++... .+..+.+|-+.. ...+..+.. .. ..-+.+.++|+.+++.. .++.+..||++++
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGT------NKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTT------TEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCC------CeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 3333 454 444443 345888887764 233444544 32 44567778898776664 4667999999998
Q ss_pred eEEEE
Q 044435 334 RVESF 338 (378)
Q Consensus 334 ~~~~v 338 (378)
+....
T Consensus 277 ~~~~~ 281 (391)
T 1l0q_A 277 TITAT 281 (391)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 86654
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.41 E-value=2.4 Score=37.10 Aligned_cols=195 Identities=12% Similarity=-0.027 Sum_probs=103.8
Q ss_pred eEEEeecCCcEEEEcC-cccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC---c
Q 044435 109 LLALKNYPKGIILLNP-LTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN---L 184 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP-~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~---~ 184 (378)
+++.......+.+||. .+++...+..... ......+.+.+ +.+-+.+ . ....+.+|+.++. .
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----~~~v~~l~~~~--~~~l~s~-~------~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEA-----NLGICRICKYG--DDKLIAA-S------WDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCC-----CSCEEEEEEET--TTEEEEE-E------TTSEEEEECHHHHTTBC
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCC-----CCceEEEEeCC--CCEEEEE-c------CCCeEEEEccccccccc
Confidence 3555556778999999 8888766654211 12344666766 4443332 2 1245677766430 0
Q ss_pred ----EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCC-ce--eeeecCCCCCCCCCCccc
Q 044435 185 ----WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI-ET--FYSMPMPGFGNEGGGGEL 257 (378)
Q Consensus 185 ----W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~-~~--~~~i~lP~~~~~~~~~~~ 257 (378)
.+.+... .. ...-.++.+++.....+..+ ..|..||+.+ .. ......+.... ..
T Consensus 137 ~~~~~~~~~~~---~~-----~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~-----i~ 197 (342)
T 1yfq_A 137 IAVKNLNSNNT---KV-----KNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQ-----IR 197 (342)
T ss_dssp EEEEESCSSSS---SS-----CCCEEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSSC-----EE
T ss_pred ccccCCeeeEE---ee-----CCceEEEEecCCcEEEEeCC------CeEEEEECCccccccceeeecCCCCc-----ee
Confidence 1111111 10 00111333333333333333 2799999887 32 33333322211 11
Q ss_pred ceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C--------CceeEEEEEEeCCCEEEEEeCCCeEE
Q 044435 258 SGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N--------GYRVIPLAFSSRGDKVLFQKNSKDHC 326 (378)
Q Consensus 258 ~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~--------~~~~~~~~~~~~g~~v~~~~~~~~~~ 326 (378)
.+... +|.+.++...++.+.||.++..+..........+.. . ......+++.++|..++....++.+.
T Consensus 198 -~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 198 -DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp -EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred -EEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 34444 577777777777999999986411111112222222 1 11355677788888777777787899
Q ss_pred EEECCCCeEEE
Q 044435 327 WYHLDMHRVES 337 (378)
Q Consensus 327 ~ydl~~~~~~~ 337 (378)
.||+++++...
T Consensus 277 vwd~~~~~~~~ 287 (342)
T 1yfq_A 277 CWNLQTRKKIK 287 (342)
T ss_dssp EEETTTTEEEE
T ss_pred EEcCccHhHhh
Confidence 99999887543
No 57
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.36 E-value=2.6 Score=37.25 Aligned_cols=148 Identities=9% Similarity=-0.012 Sum_probs=81.6
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGN 250 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~ 250 (378)
...+..++..++.++.+... .. . .....-.+.-+|.+|.....+.. ..|..||+.+++.+.+ .++....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~---~~--~-~~p~~~a~spdg~l~~~~~~~~~----~~v~~~~~~~g~~~~~~~~~~~~~ 86 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLL---AA--T-QNPTYLALSAKDCLYSVDKEDDE----GGIAAWQIDGQTAHKLNTVVAPGT 86 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE---EE--C-SCCCCEEECTTCEEEEEEEETTE----EEEEEEEEETTEEEEEEEEEEESC
T ss_pred CEEEEEEcCCCCeEEEeeee---ec--c-CCcceEEEccCCeEEEEEecCCC----ceEEEEEecCCcEEEeeeeecCCC
Confidence 34455556667777664332 11 0 00011112237888887764211 3799999987777665 2222211
Q ss_pred CCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CC-------ceeEEEEEEeCCCEEEEE
Q 044435 251 EGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NG-------YRVIPLAFSSRGDKVLFQ 319 (378)
Q Consensus 251 ~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~-------~~~~~~~~~~~g~~v~~~ 319 (378)
.. . .++.. +|+ |++....++.+.+|.++..+ ....+..+.. .. ....-+++.++|+ +++.
T Consensus 87 ~p----~-~~a~spdg~~l~~~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~ 157 (347)
T 3hfq_A 87 PP----A-YVAVDEARQLVYSANYHKGTAEVMKIAADG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI 157 (347)
T ss_dssp CC----S-EEEEETTTTEEEEEETTTTEEEEEEECTTS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred CC----E-EEEECCCCCEEEEEeCCCCEEEEEEeCCCC---CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence 11 1 44554 565 55555455689999997532 2344444432 11 1244577788999 6555
Q ss_pred eC-CCeEEEEECC-CCeEEEE
Q 044435 320 KN-SKDHCWYHLD-MHRVESF 338 (378)
Q Consensus 320 ~~-~~~~~~ydl~-~~~~~~v 338 (378)
.. +..+..||++ ++++..+
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEE
T ss_pred eCCCCEEEEEEECCCCcEEEe
Confidence 44 5569999998 6666654
No 58
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.29 E-value=0.79 Score=39.64 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=69.0
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcc
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDS 290 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~ 290 (378)
|.+|...+.... ..|..+|+.+++- ..+++|.... .. .++..+++|+++...+..+ ++.+- .+
T Consensus 32 g~Lyvstg~~~~----s~v~~iD~~tg~v~~~i~l~~~~f-----ge-Gi~~~g~~lyv~t~~~~~v--~viD~----~t 95 (266)
T 2iwa_A 32 DTLFESTGLYGR----SSVRQVALQTGKVENIHKMDDSYF-----GE-GLTLLNEKLYQVVWLKNIG--FIYDR----RT 95 (266)
T ss_dssp TEEEEEECSTTT----CEEEEEETTTCCEEEEEECCTTCC-----EE-EEEEETTEEEEEETTCSEE--EEEET----TT
T ss_pred CeEEEECCCCCC----CEEEEEECCCCCEEEEEecCCCcc-----eE-EEEEeCCEEEEEEecCCEE--EEEEC----CC
Confidence 678887653221 3899999998765 4457765322 12 4566688999998655554 44443 13
Q ss_pred eEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe-EEEEe
Q 044435 291 WSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR-VESFL 339 (378)
Q Consensus 291 W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~-~~~v~ 339 (378)
-..+.+|+... ....++..+|+.+++...+.++..+|+++.+ .+.|.
T Consensus 96 ~~v~~~i~~g~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 96 LSNIKNFTHQM--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp TEEEEEEECCS--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred CcEEEEEECCC--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 45556665420 1235566677767777666679999999977 44444
No 59
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.23 E-value=2.7 Score=37.13 Aligned_cols=192 Identities=10% Similarity=-0.013 Sum_probs=100.7
Q ss_pred ccceEEEee-cCCcEEEEcCcccce-eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 106 CNGLLALKN-YPKGIILLNPLTKKH-RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
.++.+.+.. ....+.|+|+.|++. ..++... ...++.+++.. ++..... ....+.+++..++
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~--------~p~~i~~~~~g---~lyv~~~-----~~~~v~~iD~~t~ 115 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT--------SPRYIHFLSDE---KAYVTQI-----WDYRIFIINPKTY 115 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS--------SEEEEEEEETT---EEEEEEB-----SCSEEEEEETTTT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC--------CCcEEEEeCCC---eEEEEEC-----CCCeEEEEECCCC
Confidence 345554443 456789999999887 4454222 12245554442 3322211 1356888998887
Q ss_pred cEEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEE
Q 044435 184 LWRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 184 ~W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~ 261 (378)
+-.. ++.. .. .........-+.-+|.+|....... ..|.++|+.+.+.. .++...... .+.
T Consensus 116 ~~~~~i~~g---~~-~~~~~~p~~i~~~~~~lyv~~~~~~-----~~v~viD~~t~~~~~~i~~g~~p~--------~i~ 178 (328)
T 3dsm_A 116 EITGYIECP---DM-DMESGSTEQMVQYGKYVYVNCWSYQ-----NRILKIDTETDKVVDELTIGIQPT--------SLV 178 (328)
T ss_dssp EEEEEEECT---TC-CTTTCBCCCEEEETTEEEEEECTTC-----CEEEEEETTTTEEEEEEECSSCBC--------CCE
T ss_pred eEEEEEEcC---Cc-cccCCCcceEEEECCEEEEEcCCCC-----CEEEEEECCCCeEEEEEEcCCCcc--------ceE
Confidence 5332 2111 00 0000011112235677777653211 37999999987654 344432211 223
Q ss_pred E-ECCeEEEEEcCCC--------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 262 V-LKGCLSLLCKYSE--------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 262 ~-~~G~L~~~~~~~~--------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
. -+|+++++..... .-.|++++... .+ ....+.. ......-+++.++|+.+++... .++.+|++
T Consensus 179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--~~--v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--FT--VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--TE--EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred EcCCCCEEEEECCCccCCccccCCceEEEEECCC--Ce--EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 3 3689888776431 13455555321 12 2233333 1112556777777886766644 69999999
Q ss_pred CCeEE
Q 044435 332 MHRVE 336 (378)
Q Consensus 332 ~~~~~ 336 (378)
++++.
T Consensus 253 t~~~~ 257 (328)
T 3dsm_A 253 ADRVP 257 (328)
T ss_dssp CSSCC
T ss_pred CCcee
Confidence 88863
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=94.11 E-value=3.1 Score=37.26 Aligned_cols=112 Identities=7% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCC-CCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGF-GNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~-~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.....+..++ .|..+|+.+.+-........ ......... ......+...++...++.+.+|.+..
T Consensus 256 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d~~~----- 323 (408)
T 4a11_B 256 DGLHLLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGSTIAVYTVYS----- 323 (408)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETTEEEEEETTT-----
T ss_pred CCCEEEEecCCC------eEEEEECCCCccceecccccccccccccee-EEecCCCceEEEEecCCEEEEEECcC-----
Confidence 565555554442 69999998765433211111 000001111 11112233333334445888888764
Q ss_pred ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
...+..+........-+++.++|..++....++.+..||+++.+.
T Consensus 324 -~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 324 -GEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp -CCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred -CcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 223444443111255678888999777787788899999998764
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.05 E-value=3.6 Score=37.82 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=66.0
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCC
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYG 286 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~ 286 (378)
++.++|.....+..++ .|..+|+.+.+.... +..+.. .. .....+|.+.++...++.+.+|.+...
T Consensus 284 ~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~-~~~~~~-----~v-~~~~~~~~~l~~~~~dg~i~vwd~~~~- 349 (445)
T 2ovr_B 284 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHT-LTGHQS-----LT-SGMELKDNILVSGNADSTVKIWDIKTG- 349 (445)
T ss_dssp EEEECSSEEEEEETTS------CEEEEETTTCCEEEE-ECCCCS-----CE-EEEEEETTEEEEEETTSCEEEEETTTC-
T ss_pred EEEECCCEEEEEeCCC------eEEEEECCCCCEEEE-EcCCcc-----cE-EEEEEeCCEEEEEeCCCeEEEEECCCC-
Confidence 4555777766666553 699999987654332 111111 11 222335666666666779999988652
Q ss_pred CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
.....+.. ......+.++.-+++.++....++.+..||+++++...
T Consensus 350 -----~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 350 -----QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp -----CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred -----cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 22334432 11112233444467877777778889999999887543
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=93.94 E-value=2.7 Score=37.17 Aligned_cols=139 Identities=9% Similarity=0.027 Sum_probs=83.0
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGF 248 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~ 248 (378)
...+.+|+..++.|+..... .. .. ..-.++. -+|.+...+..+. .|..+|+.+.++... .+...
T Consensus 29 d~~v~i~~~~~~~~~~~~~~---~~--h~--~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHEL---KE--HN--GQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEE---EC--CS--SCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEEEECCCC
T ss_pred CCEEEEEeCCCCcEEeeeee---cC--CC--CcccEEEEeCCCCEEEEEcCCC------eEEEEECCCCeeeeeEEeecC
Confidence 35688888888876655433 11 00 0011222 2466555555442 688999988776544 33322
Q ss_pred CCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEE
Q 044435 249 GNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHC 326 (378)
Q Consensus 249 ~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~ 326 (378)
.. .+..+... +|++.++...++.+.+|.++.. ..|.....+.. ......-+.+.++|..++....++.+.
T Consensus 96 ~~-----~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 96 NR-----AARCVRWAPNEKKFAVGSGSRVISICYFEQE---NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp SS-----CEEEEEECTTSSEEEEEETTSSEEEEEEETT---TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CC-----ceeEEEECCCCCEEEEEeCCCEEEEEEecCC---CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 11 11023333 6777777777779999999863 34655555543 232366677888888777777777899
Q ss_pred EEECC
Q 044435 327 WYHLD 331 (378)
Q Consensus 327 ~ydl~ 331 (378)
.||++
T Consensus 168 ~~d~~ 172 (372)
T 1k8k_C 168 IFSAY 172 (372)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99954
No 63
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.93 E-value=3.1 Score=36.67 Aligned_cols=171 Identities=8% Similarity=0.052 Sum_probs=90.5
Q ss_pred eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC-CCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCC
Q 044435 146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK-VNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQD 223 (378)
Q Consensus 146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~-~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~ 223 (378)
...+.++|... ++.. . .....+.+|+.. ++......... .+. ... ...-.+.-+|. +|.......
T Consensus 143 ~~~~~~spdg~---l~v~-~----~~~~~v~~~~~~~~g~~~~~~~~~-~~~--g~~-p~~~~~spdg~~l~v~~~~~~- 209 (347)
T 3hfq_A 143 IHYTDLTPDNR---LAVI-D----LGSDKVYVYNVSDAGQLSEQSVLT-MEA--GFG-PRHLVFSPDGQYAFLAGELSS- 209 (347)
T ss_dssp EEEEEECTTSC---EEEE-E----TTTTEEEEEEECTTSCEEEEEEEE-CCT--TCC-EEEEEECTTSSEEEEEETTTT-
T ss_pred ceEEEECCCCc---EEEE-e----CCCCEEEEEEECCCCcEEEeeeEE-cCC--CCC-CceEEECCCCCEEEEEeCCCC-
Confidence 44567777655 2221 1 113468888887 56555433210 011 000 00012223677 555443332
Q ss_pred cccceEEEEEEcC--Cceeeee----cCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEE
Q 044435 224 EMINDLILAFDLN--IETFYSM----PMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLF 295 (378)
Q Consensus 224 ~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 295 (378)
.|..||+. +.++..+ ..|...... .....++.. +|+ |++....+..+.+|.++.. ..+..+.
T Consensus 210 -----~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~---g~~~~~~ 279 (347)
T 3hfq_A 210 -----QIASLKYDTQTGAFTQLGIVKTIPADYTAH--NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD---GHLTLIQ 279 (347)
T ss_dssp -----EEEEEEEETTTTEEEEEEEEESSCTTCCSC--CEEEEEEECTTSCEEEEEEETTTEEEEEEECGG---GCEEEEE
T ss_pred -----EEEEEEecCCCCceEEeeeeeecCCCCCCC--CcceeEEECCCCCEEEEEeCCCCEEEEEEECCC---CcEEEeE
Confidence 45555554 4665433 334321111 111134443 675 6666666669999999853 2466666
Q ss_pred EecC-CCceeEEEEEEeCCCEEEEEeCC-CeEEEE--ECCCCeEEEEeE
Q 044435 296 TMNE-NGYRVIPLAFSSRGDKVLFQKNS-KDHCWY--HLDMHRVESFLV 340 (378)
Q Consensus 296 ~i~~-~~~~~~~~~~~~~g~~v~~~~~~-~~~~~y--dl~~~~~~~v~~ 340 (378)
.++. .. ...-+++.++|..+++...+ ..+.+| |.++++++.+.-
T Consensus 280 ~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 280 QISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 6654 22 24467788899977776654 556666 888999998853
No 64
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=93.93 E-value=0.61 Score=40.27 Aligned_cols=108 Identities=10% Similarity=-0.066 Sum_probs=69.0
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
.++.||..++..+ .|..+|+.+++- ..+ +|... +.. .++..+++|+++...+.. +|+.+-
T Consensus 63 ~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~-----Fge-Git~~g~~Ly~ltw~~~~--v~V~D~---- 123 (268)
T 3nok_A 63 HQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNI-----FAE-GLASDGERLYQLTWTEGL--LFTWSG---- 123 (268)
T ss_dssp ETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTC-----CEE-EEEECSSCEEEEESSSCE--EEEEET----
T ss_pred ECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCc-----cee-EEEEeCCEEEEEEccCCE--EEEEEC----
Confidence 3567777666553 599999988765 344 66432 222 466678899998765554 445553
Q ss_pred cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE-EEeE
Q 044435 289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE-SFLV 340 (378)
Q Consensus 289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~-~v~~ 340 (378)
.+-.++.+|+. .. ..|+..+|+.+++.....++..+|++|.+.. .|..
T Consensus 124 ~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 124 MPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp TTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 23556666765 32 2455567886777766677999999997644 4443
No 65
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.77 E-value=3.4 Score=36.62 Aligned_cols=183 Identities=10% Similarity=0.160 Sum_probs=97.0
Q ss_pred ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccC
Q 044435 114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKN 193 (378)
Q Consensus 114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~ 193 (378)
..+..+.|||..++++.......... ......+.+.|.. .+-+.+ . ....+.+++..++.++.+...
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~~h---~~~v~~~~~sp~g-~~l~s~-s------~D~~v~iw~~~~~~~~~~~~~-- 101 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSEGH---QRTVRKVAWSPCG-NYLASA-S------FDATTCIWKKNQDDFECVTTL-- 101 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECSSC---SSCEEEEEECTTS-SEEEEE-E------TTSCEEEEEECCC-EEEEEEE--
T ss_pred cCCCeEEEEEcCCCcceeeeeecccc---CCcEEEEEECCCC-CEEEEE-E------CCCcEEEEEccCCCeEEEEEc--
Confidence 45666788888877654221111111 2234456666643 332222 2 123567777776665443222
Q ss_pred CCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce-eeee-cCCCCCCCCCCcccceEEEE-CCeEE
Q 044435 194 FPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET-FYSM-PMPGFGNEGGGGELSGVYVL-KGCLS 268 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~ 268 (378)
.. .. ..-.++.+ +|.+...+..+. .|..+|+.++. ...+ .+..+.. .+..+... +|.+.
T Consensus 102 -~~--h~--~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 102 -EG--HE--NEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHTQ-----DVKHVVWHPSQELL 165 (345)
T ss_dssp -CC--CS--SCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCCS-----CEEEEEECSSSSCE
T ss_pred -cC--CC--CCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcCC-----CeEEEEECCCCCEE
Confidence 10 00 00012222 466555555442 68888886542 2222 2222111 11023332 57777
Q ss_pred EEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 269 LLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 269 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
+....++.+.+|.+.. ..|.....+.. .. ...-+.+.++|..++....++.+..+|.
T Consensus 166 ~s~s~d~~i~~w~~~~----~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 166 ASASYDDTVKLYREEE----DDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEETTSCEEEEEEET----TEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEeCCCcEEEEEecC----CCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 7777777999998875 35776666665 32 2566788888987777777777888874
No 66
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=93.72 E-value=3.8 Score=37.03 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=104.7
Q ss_pred cce-EEEeecCCcEEEEcCcccceeecCCCC-CCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 107 NGL-LALKNYPKGIILLNPLTKKHRVLPKFY-RDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 107 ~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
+|- |+....+..+.|||..++....-...+ .....+......+.+.+....+-+.+ . ....+.+++.+++.
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-~------~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-G------CDNVILVWDVGTGA 165 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE-E------TTSCEEEEETTTTE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE-c------CCCEEEEEECCCCC
Confidence 443 444445667889998887532110000 00001122344566666543433332 2 12458888888775
Q ss_pred EEecCc-ccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeec-CCCCCCCCCCcccceE
Q 044435 185 WRRIKN-IKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMP-MPGFGNEGGGGELSGV 260 (378)
Q Consensus 185 W~~~~~-~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~~~~l 260 (378)
....-. . .. ...-.++.+ +|.....+..+. .|..+|+.+.+....- ...... ... .+
T Consensus 166 ~~~~~~~~---~~-----~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~----~~~-~~ 226 (402)
T 2aq5_A 166 AVLTLGPD---VH-----PDTIYSVDWSRDGALICTSCRDK------RVRVIEPRKGTVVAEKDRPHEGT----RPV-HA 226 (402)
T ss_dssp EEEEECTT---TC-----CSCEEEEEECTTSSCEEEEETTS------EEEEEETTTTEEEEEEECSSCSS----SCC-EE
T ss_pred ccEEEecC---CC-----CCceEEEEECCCCCEEEEEecCC------cEEEEeCCCCceeeeeccCCCCC----cce-EE
Confidence 432210 0 00 000012222 566666655543 7999999876653321 221111 011 23
Q ss_pred EEE-CCeEEEEE---cCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe-
Q 044435 261 YVL-KGCLSLLC---KYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR- 334 (378)
Q Consensus 261 ~~~-~G~L~~~~---~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~- 334 (378)
... +|++.++. ..++.+.+|.+..... =.....++. ......+.+.++|..+++.. .++.+..||+++++
T Consensus 227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~---~~~~~~~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSERQVALWDTKHLEE---PLSLQELDT-SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EECSTTEEEEEEECTTCCEEEEEEETTBCSS---CSEEEECCC-CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEcCCCcEEEEeccCCCCceEEEEcCccccC---CceEEeccC-CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 333 67777666 3445999999876321 111222332 11244567788898776665 46679999999887
Q ss_pred -EEEEe
Q 044435 335 -VESFL 339 (378)
Q Consensus 335 -~~~v~ 339 (378)
++.+.
T Consensus 303 ~~~~l~ 308 (402)
T 2aq5_A 303 FLHYLS 308 (402)
T ss_dssp CEEEEE
T ss_pred ceEeec
Confidence 66663
No 67
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.58 E-value=3.9 Score=36.59 Aligned_cols=190 Identities=7% Similarity=-0.093 Sum_probs=95.1
Q ss_pred eeccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 104 GSCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 104 ~s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
-+.+|-.++. ..+..+.|||..+++....-... ......+.+.+..+.+-+.+ .. ...+.+++.++
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~~~~s~-~~------dg~v~~wd~~~ 213 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------SSEVNCVAACPGKDTIFLSC-GE------DGRILLWDTRK 213 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTCSSCEEEE-ET------TSCEEECCTTS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------CCCEEEEEEccCCCceeeee-cc------CCceEEEECCC
Confidence 3446654444 45667899999988765332211 11233455555444433322 21 23577777766
Q ss_pred CcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccc
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELS 258 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~ 258 (378)
+.-...-.. ........++.+ ++.+...+..+. .|..+|+.+.+... +..... .+.
T Consensus 214 ~~~~~~~~~-------~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~~~~~~~~~~~-------~v~ 273 (357)
T 4g56_B 214 PKPATRIDF-------CASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPDSAQTSAVHSQ-------NIT 273 (357)
T ss_dssp SSCBCBCCC-------TTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGGGCEEECCCSS-------CEE
T ss_pred Cceeeeeee-------ccccccccchhhhhcccceEEEeeccc------ceeEEECCCCcEeEEEeccce-------eEE
Confidence 432111100 000001112333 244554444432 68889987754322 222111 111
Q ss_pred eEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCC
Q 044435 259 GVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 259 ~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
.+... +| ++.+....++.+.||-++. -..+..+.... ...-+++++ ++..++-...++.+..+|+.+.
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~------~~~~~~~~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADF------SEVFRDLSHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTS------CEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCC------CcEeEECCCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 34443 45 5555555667999996653 12223333221 255677776 7886666777888999998653
No 68
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.48 E-value=3.6 Score=35.86 Aligned_cols=199 Identities=9% Similarity=0.073 Sum_probs=99.8
Q ss_pred eccc-eEEEee-cCCcEEEEcCcccce-eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 105 SCNG-LLALKN-YPKGIILLNPLTKKH-RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 105 s~~G-Ll~l~~-~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
+-+| .+.+.. ....+.++|+.+++. ........ ... .++.+++... +-+ ... .......+.+|+..
T Consensus 48 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~-~~~~~s~dg~-~l~--~~~--~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 48 TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ-----SSM-ADVDITPDDQ-FAV--TVT--GLNHPFNMQSYSFL 116 (331)
T ss_dssp CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS-----SCC-CCEEECTTSS-EEE--ECC--CSSSSCEEEEEETT
T ss_pred cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC-----CCc-cceEECCCCC-EEE--Eec--CCCCcccEEEEECC
Confidence 3344 344444 466899999999875 22211111 111 1255555432 222 211 11122378899988
Q ss_pred CCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceE-EEEEEcCCce-ee---eecCCCCCCCCCCc
Q 044435 182 VNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDL-ILAFDLNIET-FY---SMPMPGFGNEGGGG 255 (378)
Q Consensus 182 ~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~-i~~fD~~~~~-~~---~i~lP~~~~~~~~~ 255 (378)
++.-... . +. .... ..-.+.-+|. +|....... . |..||+.... .. ...++....
T Consensus 117 ~~~~~~~--~---~~--~~~~-~~~~~spdg~~l~~~~~~~~------~~i~~~~~~~~g~~~~~~~~~~~~~~~----- 177 (331)
T 3u4y_A 117 KNKFIST--I---PI--PYDA-VGIAISPNGNGLILIDRSSA------NTVRRFKIDADGVLFDTGQEFISGGTR----- 177 (331)
T ss_dssp TTEEEEE--E---EC--CTTE-EEEEECTTSSCEEEEEETTT------TEEEEEEECTTCCEEEEEEEEECSSSS-----
T ss_pred CCCeEEE--E---EC--CCCc-cceEECCCCCEEEEEecCCC------ceEEEEEECCCCcEeecCCccccCCCC-----
Confidence 7754332 1 11 1000 0112223565 555544432 4 7777765321 10 111122111
Q ss_pred ccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECC
Q 044435 256 ELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLD 331 (378)
Q Consensus 256 ~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~ 331 (378)
-. .+... +|+ |++.......+.+|.++... .=..+..++. .. ..-+.+.++|..+++... +..+..||++
T Consensus 178 ~~-~~~~spdg~~l~v~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~--~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 178 PF-NITFTPDGNFAFVANLIGNSIGILETQNPE---NITLLNAVGTNNL--PGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp EE-EEEECTTSSEEEEEETTTTEEEEEECSSTT---SCEEEEEEECSSC--CCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred cc-ceEECCCCCEEEEEeCCCCeEEEEECCCCc---ccceeeeccCCCC--CceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 11 33443 565 66666666689999877421 1112344444 22 334778889996666654 3459999999
Q ss_pred CCeEEEEe
Q 044435 332 MHRVESFL 339 (378)
Q Consensus 332 ~~~~~~v~ 339 (378)
+++++.+.
T Consensus 252 ~~~~~~~~ 259 (331)
T 3u4y_A 252 SGTLSFVK 259 (331)
T ss_dssp TTEEEEEE
T ss_pred CCceeeec
Confidence 99987663
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.34 E-value=4.7 Score=36.81 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=103.7
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
|.+++|.+. .+..++|||..|++...+-....+ ......+.|.+. +.|-+++- ....+.+++..++.
T Consensus 114 S~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~----~~~V~sv~fspd-g~~lasgs-------~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKE-GNYLAVGT-------SSAEVQLWDVQQQK 180 (420)
T ss_dssp CTTSEEEEE-ETTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTT-SSEEEEEE-------TTSCEEEEETTTTE
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCC----CCcEEEEEECCC-CCEEEEEE-------CCCeEEEEEcCCCc
Confidence 345665544 467899999999987765433221 112345666664 34433332 13468888887764
Q ss_pred EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-E
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-L 263 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~ 263 (378)
-... . . .......++..++.+...+..+. .+..+|..........+..+... .. .+.. .
T Consensus 181 ~~~~--~---~----~h~~~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h~~~----~~-~~~~~~ 240 (420)
T 4gga_A 181 RLRN--M---T----SHSARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGHSQE----VC-GLRWAP 240 (420)
T ss_dssp EEEE--E---C----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECCSSC----EE-EEEECT
T ss_pred EEEE--E---e----CCCCceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEecccccc----ee-eeeecC
Confidence 2211 1 0 00111224566777666655543 68888877654433322222211 11 2222 2
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCC-CEEEEEe--CCCeEEEEECCCCeEEEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRG-DKVLFQK--NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~~v~~~~--~~~~~~~ydl~~~~~~~v 338 (378)
+|...+....++.+.||....... .+...............+++.+++ .++.... .++.+..||+.+++....
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred CCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 577777777777999998875321 222222222211113445555533 3344433 245688888888775544
No 70
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.31 E-value=4.7 Score=36.78 Aligned_cols=195 Identities=12% Similarity=0.011 Sum_probs=96.7
Q ss_pred ccceEE-EeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGLLA-LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GLl~-l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
.+|-++ ....+..+.|||..+++....-... ......+.+.+.. .+ ++... ....+.+++..++.
T Consensus 160 ~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h------~~~V~~v~~~p~~-~~-l~s~s------~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGH------DHNVSSVSIMPNG-DH-IVSAS------RDKTIKMWEVQTGY 225 (410)
T ss_dssp TTSSEEEEEETTSCCCEEETTSSCEEECCCCC------SSCEEEEEECSSS-SE-EEEEE------TTSEEEEEETTTCC
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC------CCCEEEEEEeCCC-CE-EEEEe------CCCeEEEEECCCCc
Confidence 344433 3345667889998877654322111 1224456666543 33 22222 23468888887754
Q ss_pred EEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCC----CC-----
Q 044435 185 WRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNE----GG----- 253 (378)
Q Consensus 185 W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~----~~----- 253 (378)
-.. .... .. .. ..-...-+|.+...+..+. .|..+|+.+.+.... .-....-. .+
T Consensus 226 ~~~~~~~h---~~--~v---~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 226 CVKTFTGH---RE--WV---RMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp EEEEEECC---SS--CE---EEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred EEEEEeCC---Cc--cE---EEEEECCCCCEEEEEcCCC------eEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 221 1111 00 00 0001112466555555442 688888876544322 11000000 00
Q ss_pred ------CcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEE
Q 044435 254 ------GGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCW 327 (378)
Q Consensus 254 ------~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 327 (378)
.... ......|.+.+....++.+.+|-+... ..+..+........-+.++++|..++-...++.+..
T Consensus 292 ~~~~~~~~~~-~~~~~~g~~l~sgs~D~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 292 SISEATGSET-KKSGKPGPFLLSGSRDKTIKMWDVSTG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364 (410)
T ss_dssp GGGGCCSCC--------CCEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred chhhhccccc-cccCCCCCEEEEEeCCCeEEEEECCCC------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 0000 001113666677767779999987641 223333331112556777888887777777888999
Q ss_pred EECCCCeE
Q 044435 328 YHLDMHRV 335 (378)
Q Consensus 328 ydl~~~~~ 335 (378)
||+++++.
T Consensus 365 wd~~~~~~ 372 (410)
T 1vyh_C 365 WDYKNKRC 372 (410)
T ss_dssp ECCTTSCC
T ss_pred EECCCCce
Confidence 99987763
No 71
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.19 E-value=4.1 Score=35.76 Aligned_cols=198 Identities=12% Similarity=0.077 Sum_probs=99.7
Q ss_pred eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435 109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~ 188 (378)
+|+....+..+.|||..+++....-... ......+.+.+..+.+-+.+. ....+.+|+..++.-...
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYVGH------GNAINELKFHPRDPNLLLSVS-------KDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEESC------CSCEEEEEECSSCTTEEEEEE-------TTSCEEEEETTTTEEEEE
T ss_pred EEEEecCCCEEEEEEchhceEeeeecCC------CCcEEEEEECCCCCCEEEEEe-------CCCeEEEEEeecCeEEEE
Confidence 3444456677899999887754332211 223446677664444433332 134688888877643222
Q ss_pred -CcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-c--------------------
Q 044435 189 -KNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-P-------------------- 244 (378)
Q Consensus 189 -~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~-------------------- 244 (378)
... .. . ...-.++.+ +|.....+..++ .|..+|+.+.+.... .
T Consensus 154 ~~~~---~~--~--~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 154 FGGV---EG--H--RDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp ECST---TS--C--SSCEEEEEECTTSSEEEEEETTS------CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred eccc---cc--c--cCceeEEEECCCCCEEEEecCCC------CEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 110 00 0 000012222 355555554432 688999887543211 1
Q ss_pred CCCCCC-CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC--------CcceEEEEEecC-CCceeEEEEEEeC--
Q 044435 245 MPGFGN-EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV--------KDSWSKLFTMNE-NGYRVIPLAFSSR-- 312 (378)
Q Consensus 245 lP~~~~-~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~--------~~~W~~~~~i~~-~~~~~~~~~~~~~-- 312 (378)
.|.... ......+..+... |.+.+....++.+.+|.+..... .........+.. .. ....+++.++
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~ 298 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFW 298 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTT
T ss_pred cCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCC
Confidence 000000 0000111133333 66666666677999999875321 112233333333 11 1333455666
Q ss_pred CCEEEEEeCCCeEEEEECCCCe
Q 044435 313 GDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 313 g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
|..++....++.+..||+++++
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSS
T ss_pred CcEEEEEecCCcEEEEECCCCC
Confidence 8877777777789999999864
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.18 E-value=6.8 Score=39.10 Aligned_cols=185 Identities=5% Similarity=-0.024 Sum_probs=94.9
Q ss_pred EeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec-Cc
Q 044435 112 LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI-KN 190 (378)
Q Consensus 112 l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~-~~ 190 (378)
....+..+.|||..+++...--... ......+.+.+.. .+-+ ... ....+.+|+..++..... ..
T Consensus 30 ~~~~~g~v~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~-~~~------~dg~i~vw~~~~~~~~~~~~~ 95 (814)
T 3mkq_A 30 TTLYSGRVEIWNYETQVEVRSIQVT------ETPVRAGKFIARK-NWII-VGS------DDFRIRVFNYNTGEKVVDFEA 95 (814)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEEEGGG-TEEE-EEE------TTSEEEEEETTTCCEEEEEEC
T ss_pred EEeCCCEEEEEECCCCceEEEEecC------CCcEEEEEEeCCC-CEEE-EEe------CCCeEEEEECCCCcEEEEEec
Confidence 3334556788998887654322211 1123456666643 2222 222 135688898887754322 11
Q ss_pred ccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc-eeeeecCCCCCCCCCCcccceEEEE--CCeE
Q 044435 191 IKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE-TFYSMPMPGFGNEGGGGELSGVYVL--KGCL 267 (378)
Q Consensus 191 ~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L 267 (378)
. .. ... .-...-+|.....+..+ ..|..+|+.++ ..... +..+.. .-. .+... +|.+
T Consensus 96 ~---~~--~v~---~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~-~~~~~~----~v~-~~~~~p~~~~~ 155 (814)
T 3mkq_A 96 H---PD--YIR---SIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQT-FEGHEH----FVM-CVAFNPKDPST 155 (814)
T ss_dssp C---SS--CEE---EEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEE-EECCSS----CEE-EEEEETTEEEE
T ss_pred C---CC--CEE---EEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEE-EcCCCC----cEE-EEEEEcCCCCE
Confidence 1 00 000 00111245444444433 27889998775 33222 111111 111 33443 4667
Q ss_pred EEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEe--CCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 268 SLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSS--RGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 268 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~--~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.++...++.+.+|.+.... .... +.. .......+.+.+ +|..++....++.+..||+++++..
T Consensus 156 l~~~~~dg~v~vwd~~~~~--~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQST--PNFT----LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp EEEEETTSEEEEEETTCSS--CSEE----EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred EEEEeCCCeEEEEECCCCc--ceeE----EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 7777777799999886532 1122 222 111244566666 7777777777778999999887743
No 73
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.11 E-value=4.7 Score=36.25 Aligned_cols=195 Identities=11% Similarity=0.046 Sum_probs=101.8
Q ss_pred EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--cEEe
Q 044435 110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--LWRR 187 (378)
Q Consensus 110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--~W~~ 187 (378)
|+....+..+.+||..+++....-....... +......+.+.+..+.+-+.+ . ....+.+++.+.. .-+.
T Consensus 173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg-s------~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSG-HTADVLSLSINSLNANMFISG-S------CDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp EEEECTTSCEEEECTTTCCEEEEECCCSSSS-CCSCEEEEEECSSSCCEEEEE-E------TTSCEEEEETTTTCCCCEE
T ss_pred EEEECCCCcEEEEEcCCCcEEEEeecccCCC-CccCeEEEEeecCCCCEEEEE-E------CCCeEEEEECCCCCcceEE
Confidence 4444466779999999988664322111110 022344555554444433322 2 1345778887532 1111
Q ss_pred cCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-
Q 044435 188 IKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL- 263 (378)
Q Consensus 188 ~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~- 263 (378)
.... ...-.++.+ +|.....+..+. .|..+|+.+..-.. +.............+..++..
T Consensus 245 ~~~h----------~~~v~~v~~~p~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 245 YHGH----------EGDINSVKFFPDGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp ECCC----------SSCCCEEEECTTSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred ECCc----------CCCeEEEEEecCCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 1110 000112222 566555554442 69999998765433 333222111100111133333
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec---C-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN---E-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~---~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+|++.++...++.+.||-+... .....+. . ......-+++.++|..++-...++.+..+|+++.+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLA------EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTC------CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEEECCCCEEEEECCCC------ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6888888777789999986542 1222232 1 12235567888899977777777779999988753
No 74
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.07 E-value=4.5 Score=35.88 Aligned_cols=114 Identities=8% Similarity=0.008 Sum_probs=67.3
Q ss_pred CCe-EEEEeecCCCcccceEEEEEEcCCceeeee----cCCCCCCCCCCcccceEEEE-CCe-EEEEEcC-CCcEEEEEe
Q 044435 211 NGA-LHWLANQNQDEMINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSGVYVL-KGC-LSLLCKY-SEPWDLWVM 282 (378)
Q Consensus 211 ~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~-~~~l~iW~l 282 (378)
+|. +|...... ..|..||+.++++..+ ..|..... -. .+... +|+ |++.... ...+.||.+
T Consensus 221 dg~~l~v~~~~~------~~v~v~~~~~g~~~~~~~~~~~~~~~~~----~~-~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 221 DGKFAYLINEIG------GTVIAFRYADGMLDEIQTVAADTVNAQG----SG-DIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp TSSEEEEEETTT------CEEEEEEEETTEEEEEEEEESCSSCCCC----EE-EEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CCCEEEEEcCCC------CeEEEEEecCCceEEeEEEecCCCCCCC----cc-cEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 676 45444333 3688899887766544 22322111 11 33443 676 4454444 458999999
Q ss_pred ccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeE--EEEECCCCeEEEEe
Q 044435 283 KEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDH--CWYHLDMHRVESFL 339 (378)
Q Consensus 283 ~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~--~~ydl~~~~~~~v~ 339 (378)
+... ..+..+..+.. .. ..-+++.++|+.+++... +..+ +.+|+++++++.+.
T Consensus 290 ~~~~--g~~~~~~~~~~g~~--~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 290 DETN--GTLTKVGYQLTGIH--PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp CTTT--CCEEEEEEEECSSC--CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred cCCC--CcEEEeeEecCCCC--CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 7422 34666665554 22 345778889997777763 3444 44788899988773
No 75
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.02 E-value=4.5 Score=35.72 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=60.0
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL 307 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 307 (378)
.|..+|+.+++.... +..+.. .-. .+... +|.+.+....++.+.+|-+... .....+........-+
T Consensus 165 ~i~~wd~~~~~~~~~-~~~h~~----~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v 232 (340)
T 1got_B 165 TCALWDIETGQQTTT-FTGHTG----DVM-SLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAI 232 (340)
T ss_dssp CEEEEETTTTEEEEE-ECCCSS----CEE-EEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEE
T ss_pred cEEEEECCCCcEEEE-EcCCCC----ceE-EEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEE
Confidence 688999987664332 111111 111 33333 6777777777789999987652 2233343311125667
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 308 AFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
++.++|..++....++.+..||+++++.
T Consensus 233 ~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 233 CFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 8888999777777788899999988764
No 76
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=92.94 E-value=3.7 Score=34.54 Aligned_cols=193 Identities=12% Similarity=0.004 Sum_probs=95.0
Q ss_pred EeeeccceEEE-ee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435 102 IIGSCNGLLAL-KN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG 179 (378)
Q Consensus 102 ~~~s~~GLl~l-~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys 179 (378)
+..+.+|-+.+ .+ ....+.++|+.++....++.... ....++.+|+.. ...|. . . ...+.+|+
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~p~~i~~~~~g-~l~v~---~-~----~~~i~~~d 93 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------YQPQGLAVDGAG-TVYVT---D-F----NNRVVTLA 93 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------CSCCCEEECTTC-CEEEE---E-T----TTEEEEEC
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------CCcceeEECCCC-CEEEE---c-C----CCEEEEEe
Confidence 33334566655 43 45678889998877665543221 112256666643 22222 1 0 23577787
Q ss_pred cCCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCccc
Q 044435 180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGEL 257 (378)
Q Consensus 180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~ 257 (378)
..++.-...... .. ....++.+ +|.+|+..... ..|..||..+......... .... +
T Consensus 94 ~~~~~~~~~~~~-------~~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~-~~~~-----p 152 (270)
T 1rwi_B 94 AGSNNQTVLPFD-------GL--NYPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFT-GLND-----P 152 (270)
T ss_dssp TTCSCCEECCCC-------SC--SSEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCC-SCCS-----C
T ss_pred CCCceEeeeecC-------Cc--CCCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeeccc-cCCC-----c
Confidence 766543333211 00 01123333 68877765443 2688888776544332211 1111 1
Q ss_pred ceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCe
Q 044435 258 SGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHR 334 (378)
Q Consensus 258 ~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~ 334 (378)
..++.. +|+|++.......+.+|..+.. ... .... ......-+++.++|. +++... ...+..||++++.
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~----~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESN---NQV----VLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTC---CEE----ECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSC
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCC---ceE----eecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCc
Confidence 034444 6888887765556665544321 111 1111 222244466666776 666654 4569999998876
Q ss_pred EEEE
Q 044435 335 VESF 338 (378)
Q Consensus 335 ~~~v 338 (378)
...+
T Consensus 225 ~~~~ 228 (270)
T 1rwi_B 225 STVL 228 (270)
T ss_dssp CEEC
T ss_pred ceee
Confidence 5544
No 77
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.89 E-value=4.2 Score=35.04 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=92.5
Q ss_pred EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC-CcEEec
Q 044435 110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV-NLWRRI 188 (378)
Q Consensus 110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~-~~W~~~ 188 (378)
|........++++|+.|++.+.-=+.+... ... ...+.+.. . ++. .. ...+..|+... -.|+..
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~---~~~--~~~~~pdG-~--ilv-s~------~~~V~~~d~~G~~~W~~~ 72 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGW---ECN--SVAATKAG-E--ILF-SY------SKGAKMITRDGRELWNIA 72 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTC---CCC--EEEECTTS-C--EEE-EC------BSEEEEECTTSCEEEEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccC---CCc--CeEECCCC-C--EEE-eC------CCCEEEECCCCCEEEEEc
Confidence 333345677889999998855332221100 111 23334432 2 222 11 23577888722 357754
Q ss_pred CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE-EECCeE
Q 044435 189 KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY-VLKGCL 267 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~-~~~G~L 267 (378)
... .. . .....+.-||.++....... ..|+.||...+....+.+....... ......+. ..+|.+
T Consensus 73 ~~~---~~--~---~~~~~~~~dG~~lv~~~~~~-----~~v~~vd~~Gk~l~~~~~~~~~~~~-~~~~~~v~~~~~G~~ 138 (276)
T 3no2_A 73 APA---GC--E---MQTARILPDGNALVAWCGHP-----STILEVNMKGEVLSKTEFETGIERP-HAQFRQINKNKKGNY 138 (276)
T ss_dssp CCT---TC--E---EEEEEECTTSCEEEEEESTT-----EEEEEECTTSCEEEEEEECCSCSSG-GGSCSCCEECTTSCE
T ss_pred CCC---Cc--c---ccccEECCCCCEEEEecCCC-----CEEEEEeCCCCEEEEEeccCCCCcc-cccccCceECCCCCE
Confidence 321 00 1 11223456788777654412 3789999866544444443221110 00000112 236777
Q ss_pred EEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 268 SLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 268 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
.++...+.++..|-.+ + +..|+... .. . ..-.....+|++++......+++.+|++|++.
T Consensus 139 lv~~~~~~~v~~~d~~--G-~~~w~~~~--~~-~--~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 139 LVPLFATSEVREIAPN--G-QLLNSVKL--SG-T--PFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EEEETTTTEEEEECTT--S-CEEEEEEC--SS-C--CCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred EEEecCCCEEEEECCC--C-CEEEEEEC--CC-C--ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 6666555565554443 2 34565322 11 1 11233345788666565566799999996654
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.85 E-value=5 Score=35.83 Aligned_cols=196 Identities=11% Similarity=0.018 Sum_probs=97.3
Q ss_pred ecCCcEEEEcCcccceeecCCCC-------CCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 114 NYPKGIILLNPLTKKHRVLPKFY-------RDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 114 ~~~~~~~V~NP~t~~~~~LP~~~-------~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
..+..+.|||..+++........ ............+.+.+..+.+-+.+. ....+.+|+..++.-.
T Consensus 63 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~ 135 (408)
T 4a11_B 63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS-------FDKTLKVWDTNTLQTA 135 (408)
T ss_dssp ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE-------TTSEEEEEETTTTEEE
T ss_pred cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe-------CCCeEEEeeCCCCccc
Confidence 44556778887776543322110 000011223456667664444433331 1346888888776433
Q ss_pred ecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CC
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KG 265 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G 265 (378)
..-.. +. ........+..-++.+...+..+. .|..||+.+.+.... +..+.. .+..+... +|
T Consensus 136 ~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~~~~~~~-~~~~~~-----~v~~~~~~~~~ 198 (408)
T 4a11_B 136 DVFNF---EE--TVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKSGSCSHI-LQGHRQ-----EILAVSWSPRY 198 (408)
T ss_dssp EEEEC---SS--CEEEEEECSSCSSCCEEEEEESSS------SEEEEESSSSCCCEE-ECCCCS-----CEEEEEECSSC
T ss_pred eeccC---CC--ceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCCcceeee-ecCCCC-----cEEEEEECCCC
Confidence 22111 11 110000011112444555554442 688999887644322 111111 11023333 44
Q ss_pred e-EEEEEcCCCcEEEEEeccCCCCcceEEEE--------Ee----cCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435 266 C-LSLLCKYSEPWDLWVMKEYGVKDSWSKLF--------TM----NENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 266 ~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~--------~i----~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~ 332 (378)
. +.++...++.+.+|.+...... ..... .+ ........-+.+.++|..++....++.+..||+++
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGC--LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCC--SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CcEEEEEcCCCcEEEEECCCCCcc--cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 4 6667777779999988653210 00000 00 00112255677778898788887788899999998
Q ss_pred CeE
Q 044435 333 HRV 335 (378)
Q Consensus 333 ~~~ 335 (378)
.+.
T Consensus 277 ~~~ 279 (408)
T 4a11_B 277 GEN 279 (408)
T ss_dssp CCB
T ss_pred Ccc
Confidence 764
No 79
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.80 E-value=4.1 Score=34.68 Aligned_cols=192 Identities=9% Similarity=-0.064 Sum_probs=98.1
Q ss_pred EeeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+....+|.+.+.. ....++++|| +++...+..+.. .....++.+|+.. ...+ .. .....+.+|+.
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v---~~----~~~~~i~~~~~ 169 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-----GSYPSFITLGSDN-ALWF---TE----NQNNAIGRITE 169 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-----TCCEEEEEECTTS-CEEE---EE----TTTTEEEEECT
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-----CCCCceEEEcCCC-CEEE---Ee----CCCCEEEEEcC
Confidence 3333467766665 4567889999 776655432211 1123456666543 2221 11 11235777777
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS 258 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~ 258 (378)
++........ . .. ....++.+ +|.+|+..... ..|..||. ++++..+.+|.... .+.
T Consensus 170 -~g~~~~~~~~----~--~~--~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~-----~~~ 228 (299)
T 2z2n_A 170 -SGDITEFKIP----T--PA--SGPVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKIPTPNA-----RPH 228 (299)
T ss_dssp -TCCEEEEECS----S--TT--CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTC-----CEE
T ss_pred -CCcEEEeeCC----C--CC--CcceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEECCCCCC-----Cce
Confidence 6666553211 1 10 11123433 57876654333 37999999 77777666663222 111
Q ss_pred eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.+... +|.|++.......+.+|..+ + ... ...++........+.+ ++|. +++......+..||+++++++
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~--g---~~~-~~~~~~~~~~~~~i~~-~~g~-l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSN--N---IIE-EYPIQIKSAEPHGICF-DGET-IWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETT--T---EEE-EEECSSSSCCEEEEEE-CSSC-EEEEETTTEEEEEEEC-----
T ss_pred eEEECCCCCEEEeccCCceEEEECCC--C---ceE-EEeCCCCCCccceEEe-cCCC-EEEEecCCcEEEEEcCcccCC
Confidence 34443 68888877555555555431 1 111 1222221112444555 6777 777765667999999988653
No 80
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=92.76 E-value=5 Score=35.58 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=97.3
Q ss_pred EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc--CCCcEEecCcccCCCc
Q 044435 119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL--KVNLWRRIKNIKNFPY 196 (378)
Q Consensus 119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss--~~~~W~~~~~~~~~p~ 196 (378)
++.+|+.|++...+...... .+. .+.+++... + ++.... . ......+.+|+. .++..+.+... +.
T Consensus 31 ~~~~d~~~g~~~~~~~~~~~----~p~--~l~~spdg~-~-l~~~~~-~-~~~~~~v~~~~~~~~~g~~~~~~~~---~~ 97 (361)
T 3scy_A 31 TFRFNEETGESLPLSDAEVA----NPS--YLIPSADGK-F-VYSVNE-F-SKDQAAVSAFAFDKEKGTLHLLNTQ---KT 97 (361)
T ss_dssp EEEEETTTCCEEEEEEEECS----CCC--SEEECTTSS-E-EEEEEC-C-SSTTCEEEEEEEETTTTEEEEEEEE---EC
T ss_pred EEEEeCCCCCEEEeecccCC----CCc--eEEECCCCC-E-EEEEEc-c-CCCCCcEEEEEEeCCCCcEEEeeEe---cc
Confidence 34458888887666543111 112 345555432 2 222221 1 112235555554 44777666543 21
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc-eeeee----cCCCCCCC--C-CCcccceEEEE-CCe-
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE-TFYSM----PMPGFGNE--G-GGGELSGVYVL-KGC- 266 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i----~lP~~~~~--~-~~~~~~~l~~~-~G~- 266 (378)
. ......+.++|...+.+.... ..|..||+.+. ....+ ........ . .......+... +|+
T Consensus 98 --~--~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 98 --M--GADPCYLTTNGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp --S--SSCEEEEEECSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred --C--CCCcEEEEECCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 0 111123344777555554432 26888888643 22211 11110000 0 00111023443 675
Q ss_pred EEEEEcCCCcEEEEEeccCCCCc--c-eEEE---EEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435 267 LSLLCKYSEPWDLWVMKEYGVKD--S-WSKL---FTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~~~--~-W~~~---~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~~~v 338 (378)
|++.......+.+|.++...... . .... ..+.. ......-++++++|..+++.. .+..+.+||+++++++.+
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 66665555689999988643100 1 2221 22222 222245678888999777766 456799999998888766
Q ss_pred e
Q 044435 339 L 339 (378)
Q Consensus 339 ~ 339 (378)
.
T Consensus 249 ~ 249 (361)
T 3scy_A 249 Q 249 (361)
T ss_dssp E
T ss_pred E
Confidence 3
No 81
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.63 E-value=4.7 Score=35.00 Aligned_cols=143 Identities=8% Similarity=0.035 Sum_probs=73.2
Q ss_pred eEEEEEEcC--CCcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCc-eeeee-cCC
Q 044435 173 IEATVYGLK--VNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIE-TFYSM-PMP 246 (378)
Q Consensus 173 ~~~~vyss~--~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i-~lP 246 (378)
..+.+|+.. ++.++.+... +. .. ....+. -+|...+.+.... ..|..||+.++ ....+ .++
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~---~~--~~---~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAES---AL--PG---SLTHISTDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEE---EC--SS---CCSEEEECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEEC
T ss_pred CeEEEEEecCCCCceeecccc---cc--CC---CCcEEEEcCCCCEEEEEecCC-----CeEEEEECCCCcccccccccc
Confidence 467787776 6777766443 21 11 111222 3566444443322 26888888322 22222 112
Q ss_pred CCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEE--EecC-CCceeEEEEEEeCCCEEEEEe-
Q 044435 247 GFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLF--TMNE-NGYRVIPLAFSSRGDKVLFQK- 320 (378)
Q Consensus 247 ~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~--~i~~-~~~~~~~~~~~~~g~~v~~~~- 320 (378)
..... . .+... +|+ |++....++.+.+|.++..+ ...... .+.. ......-+.+.++|+.+++..
T Consensus 127 ~~~~~---~---~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 127 GLDGC---H---SANISPDNRTLWVPALKQDRICLFTVSDDG---HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp CCTTB---C---CCEECTTSSEEEEEEGGGTEEEEEEECTTS---CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCCc---e---EEEECCCCCEEEEecCCCCEEEEEEecCCC---ceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence 11110 0 23333 554 55554455689999887522 344433 3333 222244577788898666665
Q ss_pred CCCeEEEEECC--CCeEEE
Q 044435 321 NSKDHCWYHLD--MHRVES 337 (378)
Q Consensus 321 ~~~~~~~ydl~--~~~~~~ 337 (378)
.+..+..||++ +++++.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp TTTEEEEEESSCTTSCCEE
T ss_pred CCCEEEEEEecCCCCcEEE
Confidence 45679999984 455443
No 82
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=92.61 E-value=5.3 Score=35.55 Aligned_cols=182 Identities=10% Similarity=-0.007 Sum_probs=95.1
Q ss_pred EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecC
Q 044435 110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIK 189 (378)
Q Consensus 110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~ 189 (378)
++....+..+.+||..+++....-... ......+.+.+....-.++.... ...+.+++.+++.....-
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~g~~l~sgs~------Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSFHGH------GADVLCLDLAPSETGNTFVSGGC------DKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECCCSSCCEEEEEET------TSCEEEEETTTCCEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcCC------CCCeEEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCcEEEEe
Confidence 444446677899999888754321111 11223444444432223333221 346788888776532211
Q ss_pred cccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CC
Q 044435 190 NIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KG 265 (378)
Q Consensus 190 ~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G 265 (378)
.. . ...-.++.+ +|.....+..+. .|..+|+.+..-..+ ...... .....+... +|
T Consensus 237 ~~-------h--~~~v~~v~~~p~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g 296 (354)
T 2pbi_B 237 ET-------H--ESDVNSVRYYPSGDAFASGSDDA------TCRLYDLRADREVAIYSKESII-----FGASSVDFSLSG 296 (354)
T ss_dssp CC-------C--SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTCC-----SCEEEEEECTTS
T ss_pred cC-------C--CCCeEEEEEeCCCCEEEEEeCCC------eEEEEECCCCcEEEEEcCCCcc-----cceeEEEEeCCC
Confidence 00 0 000112222 466555555442 688999987654332 221111 111022332 68
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
.+.++...++.+.||-+... ..+..+........-+++.++|..++....++.+..|+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKG------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCC------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 88777777789999987542 12333333112366678888998777777777676664
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.57 E-value=5 Score=35.10 Aligned_cols=193 Identities=10% Similarity=0.003 Sum_probs=98.8
Q ss_pred eEEEeecCCcEEEEcCcccc--eeecCCCCCCCCCCCCceeEEeeec---CCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 109 LLALKNYPKGIILLNPLTKK--HRVLPKFYRDLHGDKPSLHGFGYDV---GSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~--~~~LP~~~~~~~~~~~~~~~~g~d~---~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+|+....+..+.|||..+++ ...+....... ......+.+.+ ..+.+-+++ . ....+.+|+.+++
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~l~~~--~-----~d~~i~i~d~~~~ 200 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN---KRDCWTVAFGNAYNQEERVVCAG--Y-----DNGDIKLFDLRNM 200 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSSCSEEECCCTTSC---CCCEEEEEEECCCC-CCCEEEEE--E-----TTSEEEEEETTTT
T ss_pred EEEEEeCCCeEEEEeCCCCCCcceeccccCCCC---CCceEEEEEEeccCCCCCEEEEE--c-----cCCeEEEEECccC
Confidence 34444566789999998875 22332222111 11233344322 122222222 2 1346888988876
Q ss_pred cEEecCcccCCCccccccccCCcceee-----CCeEEEEeecCCCcccceEEEEEEcCCceeee-e---cCCCCCCCCCC
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV-----NGALHWLANQNQDEMINDLILAFDLNIETFYS-M---PMPGFGNEGGG 254 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~-----~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i---~lP~~~~~~~~ 254 (378)
.=...... .. .. .++.+ +|.....+..++ .|..||+.+.+... + .+..+..
T Consensus 201 ~~~~~~~~---~~--~v-----~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~---- 260 (357)
T 3i2n_A 201 ALRWETNI---KN--GV-----CSLEFDRKDISMNKLVATSLEG------KFHVFDMRTQHPTKGFASVSEKAHKS---- 260 (357)
T ss_dssp EEEEEEEC---SS--CE-----EEEEESCSSSSCCEEEEEESTT------EEEEEEEEEEETTTEEEEEEEECCSS----
T ss_pred ceeeecCC---CC--ce-----EEEEcCCCCCCCCEEEEECCCC------eEEEEeCcCCCcccceeeeccCCCcC----
Confidence 43222111 10 10 12222 456666655443 78888887643211 1 1111111
Q ss_pred cccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCC-------------cceEEEEEecC-CCceeEEEEEEeCCCEEEE
Q 044435 255 GELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVK-------------DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLF 318 (378)
Q Consensus 255 ~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~-------------~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~ 318 (378)
.+..+... +|. +.+....++.+.+|.+...... .++..+..+.. .. ...-+++.++|..+++
T Consensus 261 -~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 338 (357)
T 3i2n_A 261 -TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWSPDKRGLCV 338 (357)
T ss_dssp -CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEECSSSTTEEE
T ss_pred -CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEcCCCCeEEE
Confidence 11133444 466 6666666679999998753211 23556666655 22 2556778888886664
Q ss_pred -EeCCCeEEEEECCCC
Q 044435 319 -QKNSKDHCWYHLDMH 333 (378)
Q Consensus 319 -~~~~~~~~~ydl~~~ 333 (378)
...++.+..||+++.
T Consensus 339 s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 339 CSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEETTSEEEEEEECC-
T ss_pred EecCCCcEEEEECCCc
Confidence 666778999998764
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=92.48 E-value=5.1 Score=34.97 Aligned_cols=72 Identities=10% Similarity=0.118 Sum_probs=45.3
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Q 044435 266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD-MHRVESFL 339 (378)
Q Consensus 266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~-~~~~~~v~ 339 (378)
.+.+....++.+.||.++.... ..|.....-... ....-+++.++|..++....++.+..|+.. .+.|+.+.
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~ 301 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASS-NTWSPKLLHKFN-DVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCIS 301 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTC-CCCBCCEEEECS-SCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEE
T ss_pred ceEEEEcCCCeEEEEEccCccc-cchhhhhhhcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEee
Confidence 5666666677999999876321 224321111111 125567788889877777777778888875 55788774
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=92.38 E-value=2.6 Score=38.09 Aligned_cols=202 Identities=9% Similarity=0.039 Sum_probs=97.4
Q ss_pred ceEE-EeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 108 GLLA-LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 108 GLl~-l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
+-++ ....+..+.+||..+++....-..+............+.+.+....+-+.+ .. +.....+.+|+.+++.-
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~---d~~~~~i~~~d~~~~~~- 252 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA-TG---SDNDPSILIWDLRNANT- 252 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE-EC---CSSSCCCCEEETTSTTS-
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE-EC---CCCCceEEEEeCCCCCC-
Confidence 4443 334567799999988775443222211110012344666766544443333 21 11112677888776420
Q ss_pred ecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEE
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~ 262 (378)
..... .. .....-.++.+ +|.+...+..+. .|..+|+.+.+.. .+......- . .+..
T Consensus 253 ~~~~~---~~---~~~~~v~~~~~s~~~~~~l~s~~~dg------~v~~wd~~~~~~~~~~~~~~~~v------~-~~~~ 313 (416)
T 2pm9_A 253 PLQTL---NQ---GHQKGILSLDWCHQDEHLLLSSGRDN------TVLLWNPESAEQLSQFPARGNWC------F-KTKF 313 (416)
T ss_dssp CSBCC---CS---CCSSCEEEEEECSSCSSCEEEEESSS------EEEEECSSSCCEEEEEECSSSCC------C-CEEE
T ss_pred CcEEe---ec---CccCceeEEEeCCCCCCeEEEEeCCC------CEEEeeCCCCccceeecCCCCce------E-EEEE
Confidence 00001 00 00001112333 566666665543 7999998876442 222211110 1 3333
Q ss_pred E-CC-eEEEEEcCCCcEEEEEeccCCCCcc---------------eEEEE-------------EecC-CCceeEEEEEEe
Q 044435 263 L-KG-CLSLLCKYSEPWDLWVMKEYGVKDS---------------WSKLF-------------TMNE-NGYRVIPLAFSS 311 (378)
Q Consensus 263 ~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~---------------W~~~~-------------~i~~-~~~~~~~~~~~~ 311 (378)
. +| .+.+....++.+.||.+........ |.... ..+. ......-+++.+
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 393 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF 393 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET
T ss_pred CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee
Confidence 3 45 6666666667999999876432110 11000 0000 000122456778
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 044435 312 RGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 312 ~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
+|.++.....++.+..+|+.++
T Consensus 394 dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 394 GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TTEEECBCTTSSCBCCBCCCCC
T ss_pred CCeEEEEeCCCCeEEEEEeccC
Confidence 8886666666667888888775
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=92.37 E-value=5.3 Score=34.99 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=47.6
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+|.+.++...++.+.+|.+... ......+........-+.+.++|..++....++.+..||+++.+....
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNN-----YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTT-----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCC-----cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence 5666666666678999987652 233444443111255677778899788787788899999998775544
No 87
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.22 E-value=4.6 Score=33.95 Aligned_cols=204 Identities=13% Similarity=0.019 Sum_probs=103.7
Q ss_pred EeeeccceEEEeecCCcEEEEcCcc-cceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKNYPKGIILLNPLT-KKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~~~~~~~V~NP~t-~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+.-+-+|-.++......++++|..+ ++...+...... .....+.+.+.. .+ ++.... .......+.+++.
T Consensus 47 ~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg-~~-l~~~~~--~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 47 PNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-----ICNNDHGISPDG-AL-YAISDK--VEFGKSAIYLLPS 117 (297)
T ss_dssp EEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC-----CBCSCCEECTTS-SE-EEEEEC--TTTSSCEEEEEET
T ss_pred eEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc-----ccccceEECCCC-CE-EEEEEe--CCCCcceEEEEEC
Confidence 3344456554444566899999999 887766543311 111234454433 22 222221 1123456777777
Q ss_pred CCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG 259 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~ 259 (378)
.++.-+.+... .. . ......-+|. +++....+. ...|..+|..+.....+..... ... .
T Consensus 118 ~~~~~~~~~~~---~~---~---~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~------~~~-~ 177 (297)
T 2ojh_A 118 TGGTPRLMTKN---LP---S---YWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG------RND-G 177 (297)
T ss_dssp TCCCCEECCSS---SS---E---EEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS------CEE-E
T ss_pred CCCceEEeecC---CC---c---cceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC------ccc-c
Confidence 66654444322 10 0 0001112454 444443332 1356677777666554422111 011 2
Q ss_pred EEEE-CCeEEE-EEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC-----------CeEE
Q 044435 260 VYVL-KGCLSL-LCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS-----------KDHC 326 (378)
Q Consensus 260 l~~~-~G~L~~-~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~-----------~~~~ 326 (378)
+... +|+..+ ....+..+.||.++..+. . ...+.........+.+.++|+.+++...+ ..++
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--S---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSS--C---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCCC--C---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 3332 566444 443456889999874321 1 12222211224456777889877766543 3599
Q ss_pred EEECCCCeEEEEe
Q 044435 327 WYHLDMHRVESFL 339 (378)
Q Consensus 327 ~ydl~~~~~~~v~ 339 (378)
.+|+++++.+.+.
T Consensus 253 ~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 253 LMDMDGGNVETLF 265 (297)
T ss_dssp EEETTSCSCEEEE
T ss_pred EEecCCCCceeee
Confidence 9999999877764
No 88
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=92.10 E-value=5.4 Score=34.49 Aligned_cols=193 Identities=9% Similarity=-0.030 Sum_probs=99.0
Q ss_pred ccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
.+|- |+....+..+.|||..+++...--... .-....+.+.|.. .+ ++... ....+.+++.+++
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~sgs------~D~~v~lWd~~~~- 129 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYIRSIAVHPTK-PY-VLSGS------DDLTVKLWNWENN- 129 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSS-SE-EEEEE------TTSCEEEEEGGGT-
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEEEEeCC------CCcEEEEEEcCCC-CE-EEEEC------CCCeEEEEECCCC-
Confidence 3444 444456778899999988754321111 1123456666543 22 22222 1345777776543
Q ss_pred EEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceE
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGV 260 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l 260 (378)
+...... .. . ...-.++.+ ++.+...+..+. .|..+|+.+..-... ..... .....+
T Consensus 130 ~~~~~~~---~~--h--~~~v~~v~~~p~~~~~l~sgs~D~------~v~iwd~~~~~~~~~~~~~~~------~~v~~~ 190 (304)
T 2ynn_A 130 WALEQTF---EG--H--EHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLTTGQE------RGVNYV 190 (304)
T ss_dssp TEEEEEE---CC--C--CSCEEEEEECTTCTTEEEEEETTS------EEEEEETTCSSCSEEEECCCT------TCEEEE
T ss_pred cchhhhh---cc--c--CCcEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCccceeccCCc------CcEEEE
Confidence 1111101 00 0 000112333 344444444442 788999865432211 11110 011012
Q ss_pred EEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 261 YVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 261 ~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
... ++.+.+....++.+.||-+.. -..+..+.........+.+++++..++-...++.+..+|.++.+..+
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 221 456666666677999998764 22344444311125567788888877777777889999999987654
Q ss_pred E
Q 044435 338 F 338 (378)
Q Consensus 338 v 338 (378)
.
T Consensus 265 ~ 265 (304)
T 2ynn_A 265 T 265 (304)
T ss_dssp E
T ss_pred e
Confidence 4
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.00 E-value=7.2 Score=35.68 Aligned_cols=183 Identities=8% Similarity=0.028 Sum_probs=98.5
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
+.+++....+..+.|||..+++...--... ......+.+++ .+ ++... ....+.+|+..++.-.
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~~~---~~-l~s~s------~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHH------CEAVLHLRFNN---GM-MVTCS------KDRSIAVWDMASPTDI 246 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEEEECCC------CSCEEEEECCT---TE-EEEEE------TTSCEEEEECSSSSCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcCC------CCcEEEEEEcC---CE-EEEee------CCCcEEEEeCCCCCCc
Confidence 344444456778999999988754322111 12233455542 32 32222 1345778887764311
Q ss_pred ec-CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECC
Q 044435 187 RI-KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG 265 (378)
Q Consensus 187 ~~-~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G 265 (378)
.. ... . .....-.++.++|.....+..++ .|..+|+.+.+.... +..+.. .+ .....+|
T Consensus 247 ~~~~~~---~----~~~~~v~~~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~~-~~~~~~-----~v-~~~~~~~ 306 (435)
T 1p22_A 247 TLRRVL---V----GHRAAVNVVDFDDKYIVSASGDR------TIKVWNTSTCEFVRT-LNGHKR-----GI-ACLQYRD 306 (435)
T ss_dssp EEEEEE---C----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTTCCEEEE-EECCSS-----CE-EEEEEET
T ss_pred eeeeEe---c----CCCCcEEEEEeCCCEEEEEeCCC------eEEEEECCcCcEEEE-EcCCCC-----cE-EEEEeCC
Confidence 10 000 0 00111124555777766666553 799999987654322 111111 11 2223367
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
.+.++...++.+.+|.+... ..+..+.. .. .+.++.-+|..++....++.+..||+++.+
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~---~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECG------ACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TEEEEEETTSCEEEEETTTC------CEEEEECCCSS---CEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCC------CEEEEEeCCcC---cEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 77777777789999988752 23344443 22 122333378877777778889999986653
No 90
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.91 E-value=5.7 Score=34.34 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=54.3
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~ 306 (378)
.|..+|+.+.+...+.++..... -. .+... +|+..++. +..+.+|-++. ...+..+.. .. ..-
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~~~~--~~~ 284 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVF----YF-STAVNPAKTRAFGA--YNVLESFDLEK------NASIKRVPLPHS--YYS 284 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSC----EE-EEEECTTSSEEEEE--ESEEEEEETTT------TEEEEEEECSSC--CCE
T ss_pred ceEEEeCCCCCceEeecCCCCCc----ee-eEEECCCCCEEEEe--CCeEEEEECCC------CcCcceecCCCc--eee
Confidence 58899998887664444322211 01 23332 45443333 35777776543 233344444 22 335
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
+++.++|+.+++...+..+..||+++++..
T Consensus 285 ~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 285 VNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 677788987777766677999999987643
No 91
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=91.88 E-value=7.4 Score=35.59 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=98.8
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..+.++|..++..+.|..... ....+.+.|... +++.... ......+.+++..++..+.+... +.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~-------~v~~~~~Spdg~--~la~~s~---~~~~~~i~~~d~~tg~~~~l~~~---~~ 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGS--KLAYVTF---ESGRSALVIQTLANGAVRQVASF---PR 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS-------CEEEEEECTTSS--EEEEEEC---TTSSCEEEEEETTTCCEEEEECC---SS
T ss_pred ceEEEEcCCCCCCEEEeCCCC-------cceeeEEcCCCC--EEEEEEe---cCCCcEEEEEECCCCcEEEeecC---CC
Confidence 578999988766555543221 233555655433 2333222 12246789999988876655332 11
Q ss_pred cccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-EEEEEcC
Q 044435 197 SWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKY 273 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~ 273 (378)
.. ......-+|. |++....+.. ..|..+|+.+.+...+.-. .. ... .+.-. +|+ |++....
T Consensus 224 --~~---~~~~~spdg~~la~~~~~~g~----~~i~~~d~~~~~~~~l~~~--~~----~~~-~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 224 --HN---GAPAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDG--RS----NNT-EPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp --CE---EEEEECTTSSEEEEEECTTSS----CEEEEEETTTCCEEECCCC--SS----CEE-EEEECTTSSEEEEEECT
T ss_pred --cc---cCEEEcCCCCEEEEEEecCCC----ceEEEEECCCCCEEeCcCC--CC----ccc-ceEECCCCCEEEEEECC
Confidence 10 0001112565 5545443221 3699999988776544211 11 111 23333 675 4444443
Q ss_pred CCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEE
Q 044435 274 SEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESF 338 (378)
Q Consensus 274 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v 338 (378)
++...||.++-.+.. ...+........-+.+.++|+.|++...+ ..++.+|+++++.+.+
T Consensus 288 ~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 288 AGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp TSSCEEEEEETTSSC-----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred CCCcEEEEEECCCCC-----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 456667776643211 11222211124456777899977776543 3699999999988766
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.64 E-value=5.8 Score=33.86 Aligned_cols=189 Identities=11% Similarity=-0.029 Sum_probs=96.7
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN- 183 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~- 183 (378)
+.+++++....+..+.|||..+++....-... ......+.+.+.. .+-+++ .. ...+.+++..+.
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~-~~------dg~i~~~~~~~~~ 92 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG------QGFLNSVCYDSEK-ELLLFG-GK------DTMINGVPLFATS 92 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEEEEEEEC------SSCEEEEEEETTT-TEEEEE-ET------TSCEEEEETTCCT
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC------CccEEEEEECCCC-CEEEEe-cC------CCeEEEEEeeecC
Confidence 34445555556677889998777654433222 1123356666633 333322 11 234556655432
Q ss_pred cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV- 262 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~- 262 (378)
..+..... . .....-..+.++|.....+..+. .|..+|.... ...+...... .. .+..
T Consensus 93 ~~~~~~~~---~----~~~~~i~~~~~~~~~l~~~~~d~------~i~~~d~~~~-~~~~~~~~~~------v~-~~~~~ 151 (313)
T 3odt_A 93 GEDPLYTL---I----GHQGNVCSLSFQDGVVISGSWDK------TAKVWKEGSL-VYNLQAHNAS------VW-DAKVV 151 (313)
T ss_dssp TSCC-CEE---C----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTEE-EEEEECCSSC------EE-EEEEE
T ss_pred CCCcccch---h----hcccCEEEEEecCCEEEEEeCCC------CEEEEcCCcE-EEecccCCCc------ee-EEEEc
Confidence 11111111 0 00111124555777666665553 7888983322 2222221110 11 2222
Q ss_pred E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
. ++.+.++...++.+.+|.... ....+.. .......+.+.+++. ++....++.+..||+++++...
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~ 219 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR 219 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred cCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence 2 677777777777999996221 2222332 222355677777887 7777777889999998776443
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=91.64 E-value=7.4 Score=35.07 Aligned_cols=191 Identities=10% Similarity=0.003 Sum_probs=93.5
Q ss_pred cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCC
Q 044435 115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNF 194 (378)
Q Consensus 115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 194 (378)
.+..+.|||.....- ++........+......+.+.+..+.+-+.+- ....+.+|+..++........
T Consensus 55 ~~g~i~v~~~~~~~~--~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s-------~dg~v~vw~~~~~~~~~~~~~--- 122 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGR--VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS-------EDCTVMVWEIPDGGLVLPLRE--- 122 (402)
T ss_dssp SSCCEEEEETTCCEE--CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE-------TTSEEEEEECCTTCCSSCBCS---
T ss_pred CCCEEEEEECccCCC--CCCCCceEecCCCCEEEEEeCCCCCCEEEEEe-------CCCeEEEEEccCCCCccccCC---
Confidence 455678887644321 11111111111234556777774455444331 134688888877643211000
Q ss_pred Ccc-ccccccCCcceee--CC-eEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEE
Q 044435 195 PYS-WADHSYGGNGAFV--NG-ALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLS 268 (378)
Q Consensus 195 p~~-~~~~~~~~~~v~~--~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~ 268 (378)
+.. .......-.++.+ +| .+...+..+. .|..+|+.+.+.... ....+.. .+..+... +|.+.
T Consensus 123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALI 191 (402)
T ss_dssp CSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCE
T ss_pred ceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEE
Confidence 000 0000000112222 34 3454444442 699999988765432 2122211 11023333 67777
Q ss_pred EEEcCCCcEEEEEeccCCCCcceEEEEEe-cC-CCceeEEEEEEeCCCEEEEE---eCCCeEEEEECCCCe
Q 044435 269 LLCKYSEPWDLWVMKEYGVKDSWSKLFTM-NE-NGYRVIPLAFSSRGDKVLFQ---KNSKDHCWYHLDMHR 334 (378)
Q Consensus 269 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~-~~~~~~~~~~~~~g~~v~~~---~~~~~~~~ydl~~~~ 334 (378)
++...++.+.||.+.. -..+..+ .. ......-+.+.++|.+++.. ..++.+..||+++.+
T Consensus 192 ~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEETTSEEEEEETTT------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEecCCcEEEEeCCC------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 7777777999998765 1233444 22 22123445666777755555 356679999998754
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.57 E-value=7.2 Score=34.79 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=62.8
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCC------CCcccceEEEE-CCeEEEEEcCCCcEEEEEe
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEG------GGGELSGVYVL-KGCLSLLCKYSEPWDLWVM 282 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~------~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l 282 (378)
+|.+...+..+.. ...|..||+.+.+. ..+..|...... ....+..+... +|.+.++...++.+.||.+
T Consensus 244 ~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 244 QGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp STTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 4665555554310 02799999876543 333332100000 00111133333 5777777777779999988
Q ss_pred ccCCCCcceEEEEEecC------C---------------CceeEEEEEEeCC----------CEEEEEeCCCeEEEEECC
Q 044435 283 KEYGVKDSWSKLFTMNE------N---------------GYRVIPLAFSSRG----------DKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 283 ~~~~~~~~W~~~~~i~~------~---------------~~~~~~~~~~~~g----------~~v~~~~~~~~~~~ydl~ 331 (378)
.. ...+..+.. . .....-+.+.++| ..++....++.+..||++
T Consensus 321 ~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 321 KT------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TT------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CC------CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 65 233333331 1 2235567777887 667777778889999988
Q ss_pred CCe
Q 044435 332 MHR 334 (378)
Q Consensus 332 ~~~ 334 (378)
+++
T Consensus 395 ~g~ 397 (397)
T 1sq9_A 395 GGK 397 (397)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 95
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=91.54 E-value=7.6 Score=35.03 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=102.5
Q ss_pred eccceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|-+++ ...+..+.|||..+++....-... ......+.+.+... + ++... ....+.+++.+++
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~-~-l~s~s------~d~~v~iwd~~~~ 197 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH------EQDIYSLDYFPSGD-K-LVSGS------GDRTVRIWDLRTG 197 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTSS-E-EEEEE------TTSEEEEEETTTT
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC------CCCEEEEEEcCCCC-E-EEEec------CCCcEEEEECCCC
Confidence 34555444 346778999999988765432211 22344566665432 2 22222 1356888888776
Q ss_pred cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccce
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSG 259 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~ 259 (378)
.-...-.. .. . ...+.+ +|.+...+..+. .|..+|+.++.... +..+..........+..
T Consensus 198 ~~~~~~~~---~~--~-----v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 198 QCSLTLSI---ED--G-----VTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp EEEEEEEC---SS--C-----EEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred eeEEEEEc---CC--C-----cEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 54322111 00 0 011111 566655555443 68899988765432 22221110000111213
Q ss_pred EEEE-CCeEEEEEcCCCcEEEEEeccCCCCc------ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435 260 VYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD------SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 260 l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~------~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~ 332 (378)
+... +|++.+....++.+.+|.+....... .......+........-+++.++|..++-...++.+..||+++
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 3333 67777777777799999987532110 0111111211111244567777888777777788899999998
Q ss_pred CeEE
Q 044435 333 HRVE 336 (378)
Q Consensus 333 ~~~~ 336 (378)
++..
T Consensus 342 ~~~~ 345 (393)
T 1erj_A 342 GNPL 345 (393)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 8754
No 96
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=91.49 E-value=7.2 Score=35.03 Aligned_cols=198 Identities=11% Similarity=-0.019 Sum_probs=97.2
Q ss_pred eEEEeecCCcEEEEcCcccc------eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 109 LLALKNYPKGIILLNPLTKK------HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~------~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
+++....+..+.+||..+++ .......... + ......+.+.+..+.+-+.+ . ....+.+|+.++
T Consensus 128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~l~~~-~------~dg~v~iwd~~~ 197 (416)
T 2pm9_A 128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-S--VDEVISLAWNQSLAHVFASA-G------SSNFASIWDLKA 197 (416)
T ss_dssp BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-S--SCCCCEEEECSSCTTEEEEE-S------SSSCEEEEETTT
T ss_pred EEEEEcCCCeEEEEECCCCccccccccccccccccC-C--CCCeeEEEeCCCCCcEEEEE-c------CCCCEEEEECCC
Confidence 34444456778999998876 2211110000 1 11233566666544433332 1 134588888887
Q ss_pred CcEEecCcccCCCccccccccCCcceee--CC-eEEEEeecCCCcccceEEEEEEcCCceeeeecCC-CCCCCCCCcccc
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFV--NG-ALHWLANQNQDEMINDLILAFDLNIETFYSMPMP-GFGNEGGGGELS 258 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP-~~~~~~~~~~~~ 258 (378)
+.-...-.. +.........-.++.+ +| .+...+..+... ..|..||+.+..-....+. .+. ..+.
T Consensus 198 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~---~~i~~~d~~~~~~~~~~~~~~~~-----~~v~ 266 (416)
T 2pm9_A 198 KKEVIHLSY---TSPNSGIKQQLSVVEWHPKNSTRVATATGSDND---PSILIWDLRNANTPLQTLNQGHQ-----KGIL 266 (416)
T ss_dssp TEEEEEECC---CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS---CCCCEEETTSTTSCSBCCCSCCS-----SCEE
T ss_pred CCcceEEec---cccccccCCceEEEEECCCCCCEEEEEECCCCC---ceEEEEeCCCCCCCcEEeecCcc-----Ccee
Confidence 643322111 0000000000112222 23 344444333100 1588888876431111221 111 1111
Q ss_pred eEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCC-CEEEEEeCCCeEEEEECCCCe
Q 044435 259 GVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRG-DKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 259 ~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g-~~v~~~~~~~~~~~ydl~~~~ 334 (378)
.+... +|.+.+....++.+.+|.++. ...+..+.. .. ...-+.+.++| ..++....++.+..||+++.+
T Consensus 267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~------~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRDNTVLLWNPES------AEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EEEECSSCSSCEEEEESSSEEEEECSSS------CCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred EEEeCCCCCCeEEEEeCCCCEEEeeCCC------CccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 33433 677777777777999998765 223444443 21 13456777787 666666667779999998765
No 97
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=91.44 E-value=7.5 Score=34.73 Aligned_cols=197 Identities=8% Similarity=-0.053 Sum_probs=90.9
Q ss_pred ccceEEEeecCCcEEEEcCcccceeecCCCCCCC---CC-CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDL---HG-DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~---~~-~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
.+|.|.+......++.+|+.|++.+.--..+... .. ..........+. . +|+... ....+..|+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~v~v~~------~~g~l~a~d~~ 121 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---G-HVYIGS------EKAQVYALNTS 121 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---T-EEEEEE------TTSEEEEEETT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---C-EEEEEc------CCCEEEEEECC
Confidence 4677766655567888899988755322221110 00 011111222221 1 222221 12467888887
Q ss_pred CC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eeeecCCCCCCCCCCccc
Q 044435 182 VN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYSMPMPGFGNEGGGGEL 257 (378)
Q Consensus 182 ~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~ 257 (378)
++ .|+..... . ....++..+|.+|.....+ .|.+||..+++ |+.- .+....... ...
T Consensus 122 tG~~~W~~~~~~-------~---~~~~p~~~~~~v~v~~~~g-------~l~~~d~~tG~~~W~~~-~~~~~~~~~-~~~ 182 (376)
T 3q7m_A 122 DGTVAWQTKVAG-------E---ALSRPVVSDGLVLIHTSNG-------QLQALNEADGAVKWTVN-LDMPSLSLR-GES 182 (376)
T ss_dssp TCCEEEEEECSS-------C---CCSCCEEETTEEEEECTTS-------EEEEEETTTCCEEEEEE-CCC-----C-CCC
T ss_pred CCCEEEEEeCCC-------c---eEcCCEEECCEEEEEcCCC-------eEEEEECCCCcEEEEEe-CCCCceeec-CCC
Confidence 65 58764322 1 1233566788877755432 79999987655 5433 222111000 001
Q ss_pred ceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-------CceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 258 SGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-------GYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 258 ~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-------~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
.....+|.+++.. .++.+..+-.+. .+..|......+. . .....|+. .++.|++...+..++++|
T Consensus 183 -~~~~~~~~v~~g~-~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 183 -APTTAFGAAVVGG-DNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALD 255 (376)
T ss_dssp -CCEEETTEEEECC-TTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEE
T ss_pred -CcEEECCEEEEEc-CCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEE
Confidence 2233355554422 122332222221 1234543321110 0 00112221 244477776667799999
Q ss_pred CCCCeEEEE
Q 044435 330 LDMHRVESF 338 (378)
Q Consensus 330 l~~~~~~~v 338 (378)
+++++..+-
T Consensus 256 ~~tG~~~w~ 264 (376)
T 3q7m_A 256 LRSGQIMWK 264 (376)
T ss_dssp TTTCCEEEE
T ss_pred CCCCcEEee
Confidence 998875543
No 98
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.27 E-value=8.3 Score=34.95 Aligned_cols=186 Identities=11% Similarity=-0.036 Sum_probs=93.9
Q ss_pred eEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC-CCcceEEEEEEcCCCcEE
Q 044435 109 LLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS-PVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 109 Ll~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~~vyss~~~~W~ 186 (378)
.+++.. ....+.++|+.+++....-+... ...++.+++..+ +-+++...... ......+.+|+..++.-.
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKIG-------LPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCCS-------EEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCCC-------CceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 343443 45678899998877654332211 233566665433 33333221010 012347889998876433
Q ss_pred ecCcccCCCccccccccCCcceeeCC-eEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFVNG-ALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL- 263 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~- 263 (378)
..-.. +. .. ..-...-+| .+|..+..+ ..|..||+.+.+... ++..... . .++..
T Consensus 297 ~~~~~---~~--~~---~~~~~~~~g~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~~~~-------~-~~~~s~ 354 (433)
T 3bws_A 297 DTIGP---PG--NK---RHIVSGNTENKIYVSDMCC------SKIEVYDLKEKKVQKSIPVFDKP-------N-TIALSP 354 (433)
T ss_dssp EEEEE---EE--CE---EEEEECSSTTEEEEEETTT------TEEEEEETTTTEEEEEEECSSSE-------E-EEEECT
T ss_pred eeccC---CC--Cc---ceEEECCCCCEEEEEecCC------CEEEEEECCCCcEEEEecCCCCC-------C-eEEEcC
Confidence 22111 00 00 000112246 455554443 379999998765432 3322111 1 33443
Q ss_pred CCe-EEEEEcCC--------------CcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEE
Q 044435 264 KGC-LSLLCKYS--------------EPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHC 326 (378)
Q Consensus 264 ~G~-L~~~~~~~--------------~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~ 326 (378)
+|+ |++..... +.+.+|.++. ...+..+.. .. ..-+++.++|..++.... ++.+.
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT------DTVKEFWEAGNQ--PTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT------TEEEEEEECSSS--EEEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCC------CcEEEEecCCCC--CceEEEcCCCCEEEEEECCCCeEE
Confidence 464 55444332 2677776653 233444444 32 456777888987777664 67788
Q ss_pred EEECCC
Q 044435 327 WYHLDM 332 (378)
Q Consensus 327 ~ydl~~ 332 (378)
.|++++
T Consensus 427 v~~~~~ 432 (433)
T 3bws_A 427 VYRRDG 432 (433)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 888763
No 99
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.27 E-value=7.7 Score=34.56 Aligned_cols=197 Identities=11% Similarity=-0.013 Sum_probs=93.9
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
+.+|.++.......+.|||..+++...........+ ......+.+.+.. .+-+.+ . ....+.+++..++.
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h--~~~V~~v~~spdg-~~l~sg-s------~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEH--DDIVKTLSVFSDG-TQAVSG-G------KDFSVKVWDLSQKA 172 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------CCCCEEECCC--SSCEEEEEECSSS-SEEEEE-E------TTSCEEEEETTTTE
T ss_pred cCCCCEEEEECCCEEEEeeccccceeEEEeeccCCC--CCCEEEEEECCCC-CEEEEE-e------CCCeEEEEECCCCc
Confidence 445666666666779999999887554433221111 1223455665532 332222 2 13457888887764
Q ss_pred EEec-CcccCCCccccccccCCcceee--CCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccce
Q 044435 185 WRRI-KNIKNFPYSWADHSYGGNGAFV--NGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSG 259 (378)
Q Consensus 185 W~~~-~~~~~~p~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~ 259 (378)
-... ... . ..-.++.+ +|. ++..+..+ ..|..+|+.+.+.... ....... .+..
T Consensus 173 ~~~~~~~h--------~--~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~~-----~v~~ 231 (357)
T 4g56_B 173 VLKSYNAH--------S--SEVNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFCASDT-----IPTS 231 (357)
T ss_dssp EEEEECCC--------S--SCEEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCTTCCS-----CEEE
T ss_pred EEEEEcCC--------C--CCEEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeeccccc-----cccc
Confidence 3221 110 0 00112222 332 33333333 2688899887553322 2221111 1102
Q ss_pred EEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEE
Q 044435 260 VYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 260 l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
+... ++.+.++...++.+.+|-+.... ....+........-+++.++|. +|+-...++.+.+||+++++..
T Consensus 232 v~~sp~~~~~la~g~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 232 VTWHPEKDDTFACGDETGNVSLVNIKNPD------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp EEECTTSTTEEEEEESSSCEEEEESSCGG------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred hhhhhcccceEEEeecccceeEEECCCCc------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 3332 35676666666799999876521 1223333111245567777765 4445566777999999998765
Q ss_pred EE
Q 044435 337 SF 338 (378)
Q Consensus 337 ~v 338 (378)
..
T Consensus 306 ~~ 307 (357)
T 4g56_B 306 RD 307 (357)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 100
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=91.24 E-value=7.3 Score=34.22 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=94.7
Q ss_pred ccceEEEee-cCCcEEEEcCccc--ceeecCCCCCC--CCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 106 CNGLLALKN-YPKGIILLNPLTK--KHRVLPKFYRD--LHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~--~~~~LP~~~~~--~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
.+|-+.+.+ ....+.++|+..+ ....+...... .........++.+|+..+...|.-- .....+.+|+.
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~------~~~~~I~~~~~ 173 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG------YCNSRIVQFSP 173 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC------SSCCEEEEECT
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC------CCCCeEEEEcC
Confidence 466665554 4567888998665 33444321110 0111224557888875555444321 01346778875
Q ss_pred CCCcEEecCcccC--CCccccccccCCcceee--C-CeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCC
Q 044435 181 KVNLWRRIKNIKN--FPYSWADHSYGGNGAFV--N-GALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGG 254 (378)
Q Consensus 181 ~~~~W~~~~~~~~--~p~~~~~~~~~~~~v~~--~-G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~ 254 (378)
....-+.+..... .+. ........++.+ + |.+|+..... ..|..||+.++++ ..+..+......
T Consensus 174 ~g~~~~~~~~~g~~~~~~--~~~~~~p~gia~d~~~g~l~v~d~~~------~~I~~~~~~~G~~~~~~~~~~~~~~~-- 243 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPR--PGQFSVPHSLALVPHLDQLCVADREN------GRIQCFKTDTKEFVREIKHASFGRNV-- 243 (329)
T ss_dssp TSCEEEEECEECCSSSCC--TTEESCEEEEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEECCTTTTTCE--
T ss_pred CCCEEEEeccCCCCCCCC--CcccCCCcEEEEECCCCEEEEEECCC------CEEEEEECCCCcEEEEEeccccCCCc--
Confidence 4433233321100 000 001112235666 4 8888876554 3899999985555 444544332210
Q ss_pred cccceEEEECCeEEEEEc-------CCCcEEEEEeccCCCCcceEEEEEecC---CCceeEEEEEEeCCCEEEEEe-CCC
Q 044435 255 GELSGVYVLKGCLSLLCK-------YSEPWDLWVMKEYGVKDSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQK-NSK 323 (378)
Q Consensus 255 ~~~~~l~~~~G~L~~~~~-------~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~-~~~ 323 (378)
+ .++...|.++.... ...++.+|.+... . .+..+.. ......-+++.++|. +++.. .+.
T Consensus 244 ~---~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g----~--~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~ 313 (329)
T 3fvz_A 244 F---AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG----E--IIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTN 313 (329)
T ss_dssp E---EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC----C--EEEEECCSSSCCSSEEEEEECTTSE-EEEEESSSC
T ss_pred c---eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC----e--EEEEEcCCCCccCCeeEEEECCCCC-EEEEECCCC
Confidence 1 22223344444332 2226677765541 1 2233331 222244566666775 44443 334
Q ss_pred eEEEEECC
Q 044435 324 DHCWYHLD 331 (378)
Q Consensus 324 ~~~~ydl~ 331 (378)
++..|+++
T Consensus 314 ~I~~~~~~ 321 (329)
T 3fvz_A 314 TVWKFTLT 321 (329)
T ss_dssp CEEEEEEE
T ss_pred EEEEEeCC
Confidence 56666654
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.15 E-value=0.82 Score=40.99 Aligned_cols=139 Identities=6% Similarity=-0.007 Sum_probs=73.7
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce-eeee-cCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET-FYSM-PMPGF 248 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~ 248 (378)
..+.+|+..++.|+..... .. ... .-.++.+ +|.+...+..+. .|..+|+.++. +... .+..+
T Consensus 33 ~~i~iw~~~~~~~~~~~~~---~~--h~~--~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~~~~~ 99 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTF---SD--HDK--IVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLVLLRL 99 (377)
T ss_dssp SCBCEEEEETTEEEECCCB---CC--CSS--CEEEEEECTTTCCEEEEETTS------SEEEC------CCCCEEECCCC
T ss_pred CEEEEEEccCCceEEEEEE---ec--CCc--eEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeEeccc
Confidence 4577888888877766544 21 110 0112222 455544444432 68899988776 4333 22222
Q ss_pred CCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEE
Q 044435 249 GNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHC 326 (378)
Q Consensus 249 ~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~ 326 (378)
.. .+..+... +|++.+....++.+.+|.++.. ..|.....+.. ......-+.+.++|..++....++.+.
T Consensus 100 ~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 100 NR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQE---NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp SS-----CEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred CC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCc---ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 11 11022222 5777677766779999988763 34655555554 332366677888888777777777899
Q ss_pred EEECCC
Q 044435 327 WYHLDM 332 (378)
Q Consensus 327 ~ydl~~ 332 (378)
.||+++
T Consensus 172 iwd~~~ 177 (377)
T 3dwl_C 172 VLSAYV 177 (377)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 999863
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.13 E-value=7.2 Score=33.96 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=40.3
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCC----CEEEEEeCCCeEEEEECCC
Q 044435 266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRG----DKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g----~~v~~~~~~~~~~~ydl~~ 332 (378)
++.+....++.+.||.++. ...|.....+........-+++.+++ ..++-...++.+..+|+++
T Consensus 180 ~~l~sgs~D~~v~lWd~~~---~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 180 KRFASGGCDNLIKLWKEEE---DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CBEECCBTTSBCCEEEECT---TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred ceEEEecCCCeEEEEEeCC---CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 4445555556999999864 23577666555411125556666665 5566666777788898875
No 103
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.13 E-value=7.3 Score=34.06 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=44.6
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-CceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~ 332 (378)
|++.++...++.+.+|.++... ........+.. . .....-+++.++|..++....++.+..||+.+
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVED--PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSS--GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEecCCcEEEEECCCCC--CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 7777777777799999998632 11223334443 1 23466678888999888888888899999864
No 104
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=90.82 E-value=11 Score=35.75 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=47.0
Q ss_pred CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC--ceeEEEEEEeC-CCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 264 KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG--YRVIPLAFSSR-GDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 ~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~--~~~~~~~~~~~-g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+|. +.+....++.+.+|.+.. ......+.. .. ....-+.+.++ |+.++....++.+..||+++++....
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCCcEEEEEeCCCcEEEEeCCC------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 454 666666667999997653 445555554 22 02566778888 88777777778899999988775443
No 105
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=90.66 E-value=7.7 Score=33.47 Aligned_cols=199 Identities=8% Similarity=0.012 Sum_probs=101.2
Q ss_pred eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
..+|.|.+.+ ....++.+||.+++...+.... ...++.+++..+ + +++ . ...+.+|+..++
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~--------~~~~i~~~~dG~-l-~v~--~------~~~l~~~d~~~g 83 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA--------PVSSVALRQSGG-Y-VAT--I------GTKFCALNWKEQ 83 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEECSS--------CEEEEEEBTTSS-E-EEE--E------TTEEEEEETTTT
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC--------ceEEEEECCCCC-E-EEE--E------CCeEEEEECCCC
Confidence 3355555554 5667899999998765543221 123566776544 2 222 1 236888999888
Q ss_pred cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCc-----ccceEEEEEEcCCceeeee---cCCCCCCCCC
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDE-----MINDLILAFDLNIETFYSM---PMPGFGNEGG 253 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~ 253 (378)
.++.+... +. .........+.+ +|.+|+-....... .....|..+|.....-... ..|.
T Consensus 84 ~~~~~~~~---~~--~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn------ 152 (297)
T 3g4e_A 84 SAVVLATV---DN--DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN------ 152 (297)
T ss_dssp EEEEEEEC---CT--TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE------
T ss_pred cEEEEEec---CC--CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc------
Confidence 88776433 11 111111122333 68866544221100 1124788888764322211 1111
Q ss_pred CcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEE---EEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEE
Q 044435 254 GGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKL---FTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCW 327 (378)
Q Consensus 254 ~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~---~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ 327 (378)
.++.. +| .|+++.....++.+|.++... ...... ..+........-+++.++|. +++.. ....+..
T Consensus 153 -----gi~~spdg~~lyv~~~~~~~i~~~~~d~~~--G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~ 224 (297)
T 3g4e_A 153 -----GLDWSLDHKIFYYIDSLSYSVDAFDYDLQT--GQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIR 224 (297)
T ss_dssp -----EEEECTTSCEEEEEEGGGTEEEEEEECTTT--CCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEE
T ss_pred -----ceEEcCCCCEEEEecCCCCcEEEEeccCCC--CcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEE
Confidence 23333 45 577777655566666554211 122221 12221111234456666887 55554 4556999
Q ss_pred EECCCCe-EEEEeE
Q 044435 328 YHLDMHR-VESFLV 340 (378)
Q Consensus 328 ydl~~~~-~~~v~~ 340 (378)
||+++++ ...+..
T Consensus 225 ~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 225 LDPVTGKRLQTVKL 238 (297)
T ss_dssp ECTTTCCEEEEEEC
T ss_pred EcCCCceEEEEEEC
Confidence 9999655 455543
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.58 E-value=3.5 Score=43.70 Aligned_cols=185 Identities=6% Similarity=-0.015 Sum_probs=97.7
Q ss_pred eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435 109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~ 188 (378)
++........+.++|..+++......... .....+.+.+.+ .+-+.+ . ....+.+++..++.....
T Consensus 975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~------~~v~~l~~s~dg-~~l~s~-~------~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHK------KAVRHIQFTADG-KTLISS-S------EDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp EEEEEETTSCCEEEETTTTSCEEECCCCS------SCCCCEEECSSS-SCEEEE-C------SSSBEEEEETTTTEEECC
T ss_pred EEEEEcCCCCEEEEEcCCCceeeecccCC------CceEEEEECCCC-CEEEEE-c------CCCEEEEEECCCCceEEE
Confidence 34444566678888888776544322211 112234454432 222222 1 134688888888766543
Q ss_pred CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCe
Q 044435 189 KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGC 266 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~ 266 (378)
... .. ... .-...-+|.+. .+..+ ..|..+|+.+.+.... ......- . .+... +|+
T Consensus 1041 ~~~---~~--~v~---~~~~~~~~~l~-~~~~d------g~v~vwd~~~~~~~~~~~~~~~~v------~-~~~~s~d~~ 1098 (1249)
T 3sfz_A 1041 QAH---QE--TVK---DFRLLQDSRLL-SWSFD------GTVKVWNVITGRIERDFTCHQGTV------L-SCAISSDAT 1098 (1249)
T ss_dssp BCC---SS--CEE---EEEECSSSEEE-EEESS------SEEEEEETTTTCCCEEEECCSSCC------C-CEEECSSSS
T ss_pred ecC---CC--cEE---EEEEcCCCcEE-EEECC------CcEEEEECCCCceeEEEcccCCcE------E-EEEECCCCC
Confidence 222 11 110 00111144443 33332 2789999887654322 2111110 1 23333 677
Q ss_pred EEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
+.+....++.+.+|.++.... ...+.........+++.++|..++....++.+..||+++++.
T Consensus 1099 ~l~s~s~d~~v~iwd~~~~~~------~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1099 KFSSTSADKTAKIWSFDLLSP------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp SCEEECCSSCCCEECSSSSSC------SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred EEEEEcCCCcEEEEECCCcce------eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 766666667899998875321 111222111255677888999888888788899999987764
No 107
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=90.52 E-value=8.2 Score=33.60 Aligned_cols=208 Identities=9% Similarity=-0.014 Sum_probs=103.6
Q ss_pred eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|-|.+.+ ....++++|+.+++...+..... ....++.+++.. ...| . .. ........+.+|+..++
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~i~~~~dg-~l~v-~-~~-~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK------ANPAAIKIHKDG-RLFV-C-YL-GDFKSTGGIFAATENGD 122 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS------SSEEEEEECTTS-CEEE-E-EC-TTSSSCCEEEEECTTSC
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC------CCcceEEECCCC-cEEE-E-eC-CCCCCCceEEEEeCCCC
Confidence 3566665543 45679999999988776532111 123466666553 2222 2 11 11011236778887776
Q ss_pred cEEec-CcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435 184 LWRRI-KNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 184 ~W~~~-~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l 260 (378)
.-+.. ... .. . .....+.+ +|.+|+.............|..+|..++++..+.- ... ... .+
T Consensus 123 ~~~~~~~~~---~~--~---~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~----~~~-~i 187 (333)
T 2dg1_A 123 NLQDIIEDL---ST--A---YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS----VAN-GI 187 (333)
T ss_dssp SCEEEECSS---SS--C---CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES----SEE-EE
T ss_pred EEEEEEccC---cc--C---CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC----ccc-ce
Confidence 54422 211 00 0 01112222 57776654321100112478999988766655411 000 001 23
Q ss_pred EEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEE-EEe--cC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCC
Q 044435 261 YVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKL-FTM--NE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMH 333 (378)
Q Consensus 261 ~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~-~~i--~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~ 333 (378)
+.. +|+ |++.......+.+|.++..+ ...... ..+ .. ......-+++.++|. +++.. .+..+..||++++
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALEDDG--VTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTS--SSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecCCC--cCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC
Confidence 333 564 77766555577777665322 112211 111 11 111234466667888 55554 4457999999877
Q ss_pred eEEEEeE
Q 044435 334 RVESFLV 340 (378)
Q Consensus 334 ~~~~v~~ 340 (378)
..+.+..
T Consensus 265 ~~~~~~~ 271 (333)
T 2dg1_A 265 PIGQILI 271 (333)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 7777753
No 108
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=90.20 E-value=8.3 Score=33.14 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=63.4
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCCcccceEEEE-C---CeEEEEEcCCCcEEEEEecc
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGGGELSGVYVL-K---GCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~~~~~~l~~~-~---G~L~~~~~~~~~l~iW~l~~ 284 (378)
|.+...+..+. .|..+|+.+. .+... .+..+... -. .+... + +.+.+....++.+.||.++.
T Consensus 170 ~~~l~sgs~D~------~v~lwd~~~~~~~~~~~~~l~~H~~~----V~-~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 170 SRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDW----VR-DVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp CCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSC----EE-EEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cceEEEEcCCC------cEEEEEEcCCCceEEEEEEecCCCCc----eE-EEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 34555554442 5777877653 34333 33332211 11 23332 3 36666666677999999876
Q ss_pred CCCCcceEEEEEec-C-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC-CCeEEEE
Q 044435 285 YGVKDSWSKLFTMN-E-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD-MHRVESF 338 (378)
Q Consensus 285 ~~~~~~W~~~~~i~-~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~-~~~~~~v 338 (378)
.. ..|.... +. . ......-+.+.++|..++....++.+..++.. .++|+.+
T Consensus 239 ~~--~~~~~~~-~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~ 292 (297)
T 2pm7_B 239 EQ--GPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292 (297)
T ss_dssp TT--SCCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC
T ss_pred CC--Cccceee-eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEec
Confidence 32 3465432 21 1 11124557778899877777777778888876 4567765
No 109
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=90.19 E-value=8.4 Score=33.17 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=94.8
Q ss_pred ccceE-EEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGLL-ALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GLl-~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
.+|-+ +....+..+.|||..+++....-... ......+.+.+.. .+ ++... ....+.+|+.+++.
T Consensus 75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~-l~s~~------~d~~i~iwd~~~~~ 140 (312)
T 4ery_A 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH------SNYVFCCNFNPQS-NL-IVSGS------FDESVRIWDVKTGK 140 (312)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSS-SE-EEEEE------TTSCEEEEETTTCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEEEEcCC------CCCEEEEEEcCCC-CE-EEEEe------CCCcEEEEECCCCE
Confidence 34443 33346677889998887654321111 1123345555543 22 22222 12457888887653
Q ss_pred EEe-cCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435 185 WRR-IKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 185 W~~-~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~ 261 (378)
-.. .... .. . -.++. -+|.+...+..+. .|..+|+.+.+........... ....+.
T Consensus 141 ~~~~~~~~---~~--~-----v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~~~~~-----~~~~~~ 199 (312)
T 4ery_A 141 CLKTLPAH---SD--P-----VSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLIDDDNP-----PVSFVK 199 (312)
T ss_dssp EEEEECCC---SS--C-----EEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCSSCC-----CEEEEE
T ss_pred EEEEecCC---CC--c-----EEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEeccCCC-----ceEEEE
Confidence 211 1110 00 0 01122 2566555555442 6899999876543321111111 110233
Q ss_pred EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC--ceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG--YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~--~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
.. +|+..++...++.+.+|.+... .....+.. .. ..........++..++....++.+..||+++++...
T Consensus 200 ~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 200 FSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 32 5777777767779999987652 12233322 11 111112222456655556667779999999887543
No 110
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.07 E-value=19 Score=37.99 Aligned_cols=199 Identities=10% Similarity=-0.021 Sum_probs=98.8
Q ss_pred eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|- ++....+..+.|||..|++....-... ......+.+.+..+...++.... ...+.+++..++
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSN------DFFLKLWDLNQK 733 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEET------TSCEEEEETTSS
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEeC------CCeEEEEECCCc
Confidence 33453 444456677999999998765432211 12233556666544444444332 345788888776
Q ss_pred cEEec-CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCC------CCc
Q 044435 184 LWRRI-KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEG------GGG 255 (378)
Q Consensus 184 ~W~~~-~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~------~~~ 255 (378)
.-... ... .. .. ..-...-+|.....+..++ .|..+|+.+.... .+..+...... ...
T Consensus 734 ~~~~~~~~h---~~--~v---~~~~~sp~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1249)
T 3sfz_A 734 ECRNTMFGH---TN--SV---NHCRFSPDDELLASCSADG------TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799 (1249)
T ss_dssp SEEEEECCC---SS--CE---EEEEECSSTTEEEEEESSS------EEEEEEGGGTEEEEEEECCCCC--------CCCC
T ss_pred chhheecCC---CC--CE---EEEEEecCCCEEEEEECCC------eEEEEeCCCCcccceecccccccccCCccccccc
Confidence 43221 111 00 00 0001122455555554442 7888998765432 22322110000 000
Q ss_pred ccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 256 ELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 256 ~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
.+..+.. .+|...++.. .+.+.+|.+.... ....+.. .......+.+.++|..++....++.+..||.+++
T Consensus 800 ~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~ 872 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAA-KNKVLLFDIHTSG------LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEE-TTEEEEEETTTCC------EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred eEEEEEECCCCCEEEEEc-CCcEEEEEecCCC------ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence 0001111 2455544443 4577788766421 1222222 2222456777788887777777777999999887
Q ss_pred eEE
Q 044435 334 RVE 336 (378)
Q Consensus 334 ~~~ 336 (378)
+..
T Consensus 873 ~~~ 875 (1249)
T 3sfz_A 873 LKV 875 (1249)
T ss_dssp EEE
T ss_pred cee
Confidence 644
No 111
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=89.80 E-value=16 Score=35.84 Aligned_cols=180 Identities=10% Similarity=0.050 Sum_probs=86.6
Q ss_pred cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcccC
Q 044435 115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNIKN 193 (378)
Q Consensus 115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~~~ 193 (378)
.+..+.|||...+....+......+ ......+.+.+....-.++.... ...+.+++.+++.-.. +...
T Consensus 492 ~D~~i~iwd~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~------d~~v~vwd~~~~~~~~~~~~h-- 560 (694)
T 3dm0_A 492 RDRTIKLWNTLGECKYTISEGGEGH---RDWVSCVRFSPNTLQPTIVSASW------DKTVKVWNLSNCKLRSTLAGH-- 560 (694)
T ss_dssp TTSCEEEECTTSCEEEEECSSTTSC---SSCEEEEEECSCSSSCEEEEEET------TSCEEEEETTTCCEEEEECCC--
T ss_pred CCCEEEEEECCCCcceeeccCCCCC---CCcEEEEEEeCCCCcceEEEEeC------CCeEEEEECCCCcEEEEEcCC--
Confidence 4556777776554433332221111 12233455555543333333321 3457888887653322 1111
Q ss_pred CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEc
Q 044435 194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCK 272 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~ 272 (378)
......-...-+|.+...+..+. .|..+|+.+.+-.. .+.... ... .+... +|.+. +..
T Consensus 561 ------~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~~-~~~~~~-----~v~-~~~~sp~~~~l-~~~ 620 (694)
T 3dm0_A 561 ------TGYVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKLY-SLEANS-----VIH-ALCFSPNRYWL-CAA 620 (694)
T ss_dssp ------SSCEEEEEECTTSSEEEEEETTS------BCEEEETTTTEEEE-CCBCSS-----CEE-EEEECSSSSEE-EEE
T ss_pred ------CCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceEE-EecCCC-----cEE-EEEEcCCCcEE-EEE
Confidence 00000001122566665555543 68899988765422 222111 111 33333 34433 333
Q ss_pred CCCcEEEEEeccCCCCcceEEEEEecC-------------------CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 273 YSEPWDLWVMKEYGVKDSWSKLFTMNE-------------------NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~-------------------~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
.+..+.||.+... ..+..+.. ......-+.++++|..++....++.+..+|+.
T Consensus 621 ~~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESK------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTT------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCC------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 3456888987642 11111111 01124456778899988888888888888875
No 112
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=89.60 E-value=10 Score=33.31 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=96.5
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
+|.++....+..+.+||..+++....-... ......+.+.+.. .+ ++... ....+.+++.+++.-.
T Consensus 154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~sg~------~d~~v~~wd~~~~~~~ 219 (340)
T 1got_B 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGH------TGDVMSLSLAPDT-RL-FVSGA------CDASAKLWDVREGMCR 219 (340)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTS-SE-EEEEE------TTSCEEEEETTTCSEE
T ss_pred CCcEEEEECCCcEEEEECCCCcEEEEEcCC------CCceEEEEECCCC-CE-EEEEe------CCCcEEEEECCCCeeE
Confidence 455544456677899999887754322111 1123456665533 22 22222 1345778887765322
Q ss_pred e-cCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEE
Q 044435 187 R-IKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 187 ~-~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~ 262 (378)
. .... . ..-.++.+ +|.....+..+. .|..+|+.+.+-.. +..+.... .+..+..
T Consensus 220 ~~~~~h---~-------~~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~ 278 (340)
T 1got_B 220 QTFTGH---E-------SDINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYSHDNIIC-----GITSVSF 278 (340)
T ss_dssp EEECCC---S-------SCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTCCS-----CEEEEEE
T ss_pred EEEcCC---c-------CCEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEccCCccc-----ceEEEEE
Confidence 1 1110 0 00012222 566655555443 68999998765432 23222111 1102333
Q ss_pred E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435 263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYH 329 (378)
Q Consensus 263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd 329 (378)
. +|++.++...++.+.+|.+.. ......+........-+++.++|..++-...++.+..+|
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEccc------CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 3 688888887778999998764 223334433111255677788888677777677676664
No 113
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.53 E-value=9.4 Score=32.79 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCC---CEEEEEeCCCeEEEEECCCC
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRG---DKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g---~~v~~~~~~~~~~~ydl~~~ 333 (378)
|++.+....++.+.||.+... ...|.....+.. .. ...-+.+.+++ ..++-...++.+..+|+++.
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~--~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSD--AQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETT--TTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cceEEEEcCCCcEEEEEEcCC--CceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 456666666779999998753 245777766665 32 25667777764 55555666777888988763
No 114
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.44 E-value=9.2 Score=32.55 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=56.2
Q ss_pred EEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 229 LILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 229 ~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.|..||+.+.+... +..... .+..+... +|. .++...++.+.+|.+... .....+........-
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~i~~ 271 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHES-------FVYCIKLLPNGD-IVSCGEDRTVRIWSKENG------SLKQVITLPAISIWS 271 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSS-------CEEEEEECTTSC-EEEEETTSEEEEECTTTC------CEEEEEECSSSCEEE
T ss_pred eEEEEECCchhhhhhhhcCCc-------eEEEEEEecCCC-EEEEecCCEEEEEECCCC------ceeEEEeccCceEEE
Confidence 79999998765432 222111 11033443 454 344445569999987752 223334331112556
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+.+.++|. ++....++.+..||++++++...
T Consensus 272 ~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 272 VDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred EEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 77788888 66677788899999998876543
No 115
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=89.33 E-value=18 Score=35.65 Aligned_cols=192 Identities=13% Similarity=-0.014 Sum_probs=99.7
Q ss_pred cEEEEcCcccce--eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435 118 GIILLNPLTKKH--RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP 195 (378)
Q Consensus 118 ~~~V~NP~t~~~--~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p 195 (378)
.+++++..|++- +.+-..+.. .....+..+.+.. .|-++.... . .....+.+.+..++.|+.+... .
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~----~~~~~~~~~SpDG-~~l~~~~~~-~--~~~~~l~~~~~~~~~~~~l~~~---~ 271 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGD----PTTFLQSDLSRDG-KYLFVYILR-G--WSENDVYWKRPGEKDFRLLVKG---V 271 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCC----TTCEEEEEECTTS-CCEEEEEEE-T--TTEEEEEEECTTCSSCEEEEEC---S
T ss_pred EEEEEECCCCchhceEEEecCCC----CEEEEEEEECCCC-CEEEEEEeC-C--CCceEEEEEcCCCCceEEeecC---C
Confidence 388888887662 122211111 1123355555543 444444332 1 1234566666656777776432 1
Q ss_pred ccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce---eeeecCCCCCCCCCCcccceEEEECCeEEEEEc
Q 044435 196 YSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET---FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCK 272 (378)
Q Consensus 196 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~ 272 (378)
. . ....+.-+|.+|+....+.. ...|..+|+.+.. |..+-.+... ..+..+...+|+|.+...
T Consensus 272 ~--~----~~~~~~~~g~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~l~~~~~~~~~lv~~~~ 337 (695)
T 2bkl_A 272 G--A----KYEVHAWKDRFYVLTDEGAP---RQRVFEVDPAKPARASWKEIVPEDSS-----ASLLSVSIVGGHLSLEYL 337 (695)
T ss_dssp S--C----CEEEEEETTEEEEEECTTCT---TCEEEEEBTTBCSGGGCEEEECCCSS-----CEEEEEEEETTEEEEEEE
T ss_pred C--c----eEEEEecCCcEEEEECCCCC---CCEEEEEeCCCCCccCCeEEecCCCC-----CeEEEEEEECCEEEEEEE
Confidence 1 1 11233356776666543211 2489999987654 6655222111 111134445889888877
Q ss_pred CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEe
Q 044435 273 YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~ 339 (378)
.++...||.++-.+ . ....+.. .......+++.++|+.+++.... ..++.||+++++.+.+.
T Consensus 338 ~dg~~~l~~~~~~g--~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 338 KDATSEVRVATLKG--K---PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp ETTEEEEEEEETTC--C---EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEEEeCCC--C---eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 77788888887422 1 2233433 12112223334567656655432 25999999998877764
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=88.87 E-value=11 Score=32.49 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=70.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEecc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~ 284 (378)
+|.+...+..++ .|..+|+.++ .+..+ .+..+.. .+..+... +|.+.+....++.+.+|.++.
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSSEEEEEETTS------EEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred CCCEEEEeeCCC------eEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 566555554442 6888888754 22222 2222211 11133433 377878777778999999986
Q ss_pred CC---CCcceEEEEEecC-CCceeEEEEEEeC--CCEEEEEeCCCeEEEEECCCCe
Q 044435 285 YG---VKDSWSKLFTMNE-NGYRVIPLAFSSR--GDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 285 ~~---~~~~W~~~~~i~~-~~~~~~~~~~~~~--g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
.. ....|.....+.. .. ...-+.+.++ +..++....++.+..||+++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKG-SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred CcccccccCcceeeeecccCC-ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 42 1245777777765 33 2556777777 8877778878889999988765
No 117
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.85 E-value=13 Score=33.36 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred EEEEEEcCCceeeee---cCCCCCCCCCCcccceEEE--ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCce
Q 044435 229 LILAFDLNIETFYSM---PMPGFGNEGGGGELSGVYV--LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYR 303 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~~~l~~--~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 303 (378)
.|..+|+.+++.... ..|..-. ..-. .+.. .++.+.+....++.+.+|-+..... .+..+......
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~---~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~ 251 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHT---ADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGD 251 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCC---SCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCC-----CCEEECCCSSC
T ss_pred cEEEEEcCCCcEEEEeecccCCCCc---cCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCc-----ceEEECCcCCC
Confidence 688999987765433 2222111 1111 2232 2678888888888999998864221 11222221112
Q ss_pred eEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
..-+++.++|..++-...++.+..+|+++++...+
T Consensus 252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 45677888898777676777799999998765443
No 118
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=88.81 E-value=4 Score=37.28 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=67.8
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCC--------CCCCCCCCcccceEEEE--CCeEEEEEcCC----
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMP--------GFGNEGGGGELSGVYVL--KGCLSLLCKYS---- 274 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP--------~~~~~~~~~~~~~l~~~--~G~L~~~~~~~---- 274 (378)
-+|.++|....+ .|.++|+.++.-..+ +.. .+.... ... .++.. .++||++....
T Consensus 236 ~dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-g~q--~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 236 KAGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-GWQ--QVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp TTTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-SSS--CEEEETTTTEEEEEEEECCTTC
T ss_pred CCCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCC-Ccc--eeeECCCCCeEEEEeccccccc
Confidence 378899977643 699999987653322 110 010000 011 23443 46888876421
Q ss_pred --C-cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEeC-CCeEEEEECCCCeEE
Q 044435 275 --E-PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQKN-SKDHCWYHLDMHRVE 336 (378)
Q Consensus 275 --~-~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~~-~~~~~~ydl~~~~~~ 336 (378)
. --+||++|- .++..+.+|+. .. ..-+++.++|. .+|.... ++.+.+||..+++..
T Consensus 306 hk~~~~~V~viD~----~t~kv~~~i~vg~~--~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 306 HKTASRFVVVLDA----KTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTSCEEEEEEEET----TTCCEEEEEEEEEE--ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred cCCCCCEEEEEEC----CCCeEEEEEECCCC--cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 1 368999986 45777788876 42 34577788886 4555433 567999999998844
No 119
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=88.78 E-value=13 Score=33.27 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=57.7
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL 307 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 307 (378)
.|..||+.+.+....-.. +. ..+..+... +|.+.++...++.+.+|.+.... ....+........-+
T Consensus 228 ~i~~~d~~~~~~~~~~~~-~~-----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~ 295 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKLIG-HH-----GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN------SQNCFYGHSQSIVSA 295 (425)
T ss_dssp CEEEEETTCSSCSEEECC-CS-----SCEEEEEEETTTTEEEEEETTSCEEEECSSSBS------CSEEECCCSSCEEEE
T ss_pred eEEEEEcCCCceeeeecc-CC-----CceEEEEECCCCCEEEEEcCCCEEEEEECCCCc------cceEecCCCccEEEE
Confidence 699999887644322111 11 111133443 67766666667799999877522 122232211125566
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 308 AFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.+.++| .++....++.+..||+++.+....
T Consensus 296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp EEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred EECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence 777777 677777788899999988875544
No 120
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=88.71 E-value=19 Score=35.81 Aligned_cols=115 Identities=11% Similarity=0.026 Sum_probs=67.4
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCC--ceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNI--ETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~--~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~ 287 (378)
-++.+|+....+.. ...|..+|+.+ +.|..+- |.... .+..+...+++|.+....++...||.++-.+
T Consensus 326 dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~l~-~~~~~-----~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 326 VGDQLWFVSGDGAP---LKKIVRVDLSGSTPRFDTVV-PESKD-----NLESVGIAGNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp ETTEEEEEECTTCT---TCEEEEEECSSSSCEEEEEE-CCCSS-----EEEEEEEEBTEEEEEEEETTEEEEEEEETTS-
T ss_pred cCCEEEEEECCCCC---CCEEEEEeCCCCccccEEEe-cCCCC-----eEEEEEEECCEEEEEEEECCEEEEEEEeCCC-
Confidence 35567777654321 24799999987 5677662 32211 1113344588888887777777888887422
Q ss_pred CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEE
Q 044435 288 KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESF 338 (378)
Q Consensus 288 ~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v 338 (378)
. ....+.. .......++..++|+.+++.... ..++.||+.+++.+.+
T Consensus 396 -~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 -K---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp -C---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred -C---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 1 2334443 22123334445677655554322 3599999999887666
No 121
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=88.47 E-value=11 Score=32.35 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=59.6
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.+||...... .|..||+.++....+..|.... .++.. +|+|++.. ...+.+|..+. .
T Consensus 24 ~~~l~~~d~~~~------~i~~~d~~~~~~~~~~~~~~~~--------~i~~~~dG~l~v~~--~~~l~~~d~~~----g 83 (297)
T 3g4e_A 24 SNSLLFVDIPAK------KVCRWDSFTKQVQRVTMDAPVS--------SVALRQSGGYVATI--GTKFCALNWKE----Q 83 (297)
T ss_dssp TTEEEEEETTTT------EEEEEETTTCCEEEEECSSCEE--------EEEEBTTSSEEEEE--TTEEEEEETTT----T
T ss_pred CCEEEEEECCCC------EEEEEECCCCcEEEEeCCCceE--------EEEECCCCCEEEEE--CCeEEEEECCC----C
Confidence 488999876553 7999999988777666653221 34443 67766654 22343333221 2
Q ss_pred ceEEEEEecC--CCceeEEEEEEeCCCEEEEEe------------CCCeEEEEECCCCeEEEE
Q 044435 290 SWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQK------------NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 290 ~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~------------~~~~~~~ydl~~~~~~~v 338 (378)
.+..+..... ......-+.+.++|. +++.. ....++.+|.+. +.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~ 144 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKY 144 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CEEEE
Confidence 3544444432 222234466667888 55543 123588888864 44333
No 122
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=88.41 E-value=11 Score=32.23 Aligned_cols=197 Identities=13% Similarity=0.022 Sum_probs=95.2
Q ss_pred cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec-CcccC
Q 044435 115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI-KNIKN 193 (378)
Q Consensus 115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~-~~~~~ 193 (378)
....+.++||.++++..+..+..... .....++.+++..+...|.. . ...+.+|+.. +..+.. ...
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~~i~~~~~~g~l~v~~--~------~~~l~~~d~~-g~~~~~~~~~-- 110 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGY--GGIPAGCQCDRDANQLFVAD--M------RLGLLVVQTD-GTFEEIAKKD-- 110 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTE--ECCEEEEEECSSSSEEEEEE--T------TTEEEEEETT-SCEEECCSBC--
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCC--CCCCceEEEecCCCcEEEEE--C------CCCEEEEeCC-CCEEEEEecc--
Confidence 45678999999998876543110000 11234566665533322211 1 1257788887 766554 322
Q ss_pred CCccccccccCCcceee--CCeEEEEeecCC---------CcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE
Q 044435 194 FPYSWADHSYGGNGAFV--NGALHWLANQNQ---------DEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~---------~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~ 262 (378)
.. .........+.+ +|.+|+...... .......|..+|.. +++..+.-. ... -. .++.
T Consensus 111 -~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~----~~-~i~~ 179 (314)
T 1pjx_A 111 -SE--GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQF----PN-GIAV 179 (314)
T ss_dssp -TT--SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESS----EE-EEEE
T ss_pred -CC--CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCC----cc-eEEE
Confidence 11 111111223443 677776554320 00011368899987 555443100 000 00 2333
Q ss_pred E-----CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEE---EecCCC-ceeEEEEEEeCCCEEEEEe-CCCeEEEEECC
Q 044435 263 L-----KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLF---TMNENG-YRVIPLAFSSRGDKVLFQK-NSKDHCWYHLD 331 (378)
Q Consensus 263 ~-----~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~---~i~~~~-~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~ 331 (378)
. +| .|++.......+.+|.++..+ ...... .++... ....-+++.++|. +++.. ....+..||++
T Consensus 180 ~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g---~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPA---KIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EECTTSCEEEEEEEETTTTEEEEEEEEETT---EEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred ecccCCCCCEEEEEECCCCeEEEEECCCCC---ccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCC
Confidence 3 45 466666555577777665321 232222 222111 2234456666787 55543 45679999998
Q ss_pred CCe-EEEEe
Q 044435 332 MHR-VESFL 339 (378)
Q Consensus 332 ~~~-~~~v~ 339 (378)
+++ .+.+.
T Consensus 256 ~g~~~~~~~ 264 (314)
T 1pjx_A 256 GGQPKMRIR 264 (314)
T ss_dssp CBSCSEEEE
T ss_pred CCcEeEEEe
Confidence 544 44443
No 123
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=88.03 E-value=16 Score=33.49 Aligned_cols=199 Identities=7% Similarity=-0.026 Sum_probs=102.5
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
+.+|+++....+..+.|||..+++....-... ......+.+.+..+.-.++.... ...+.+++..++.
T Consensus 171 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~l~s~s~------d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH------NSTVRCLDIVEYKNIKYIVTGSR------DNTLHVWKLPKES 238 (464)
T ss_dssp CSTTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEEEESSSCEEEEEEET------TSCEEEEECCCCC
T ss_pred cCCCEEEEEeCCCCEEEEECCCCcEEEEECCC------CCccEEEEEecCCCCCEEEEEcC------CCcEEEeeCCCCc
Confidence 44666666667788999999998765432211 11233455554333333333321 2356777776543
Q ss_pred EEecCcc-cC------CCcc----cccc---ccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC
Q 044435 185 WRRIKNI-KN------FPYS----WADH---SYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN 250 (378)
Q Consensus 185 W~~~~~~-~~------~p~~----~~~~---~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 250 (378)
-...... .. .|.. .... ...-..+..+|.....+..+. .|..+|+.+.+....- ..+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~-~~~~~ 311 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL-SGHTD 311 (464)
T ss_dssp CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS------CEEEEETTTTEEEEEE-CCCSS
T ss_pred ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC------eEEEEECCCCcEEEEe-cCCCC
Confidence 1110000 00 0000 0000 001113344566555555443 6999999876553331 11111
Q ss_pred CCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEE
Q 044435 251 EGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWY 328 (378)
Q Consensus 251 ~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~y 328 (378)
... .+... +|...++...++.+.+|.+.. ...+..+.. .. ....+.+ ++..++....++.+..|
T Consensus 312 ----~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~-~v~~~~~--~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 312 ----RIY-STIYDHERKRCISASMDTTIRIWDLEN------GELMYTLQGHTA-LVGLLRL--SDKFLVSAAADGSIRGW 377 (464)
T ss_dssp ----CEE-EEEEETTTTEEEEEETTSCEEEEETTT------TEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSEEEEE
T ss_pred ----CEE-EEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCCC-cEEEEEE--cCCEEEEEeCCCcEEEE
Confidence 111 33333 677777777777999998865 223444443 22 1333333 46767777778889999
Q ss_pred ECCCCeEE
Q 044435 329 HLDMHRVE 336 (378)
Q Consensus 329 dl~~~~~~ 336 (378)
|+++.+..
T Consensus 378 d~~~~~~~ 385 (464)
T 3v7d_B 378 DANDYSRK 385 (464)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcee
Confidence 99987643
No 124
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=87.99 E-value=12 Score=32.22 Aligned_cols=102 Identities=7% Similarity=0.021 Sum_probs=59.6
Q ss_pred EEEEEEcCC-ceee-----eecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-
Q 044435 229 LILAFDLNI-ETFY-----SMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE- 299 (378)
Q Consensus 229 ~i~~fD~~~-~~~~-----~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~- 299 (378)
.|..||+.+ ++.. .+..+.... -. .+... +|+ |+++......+.+|.++... ..+.....+..
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~--g~~~~~~~~~~~ 223 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAG-----PR-HMVFHPNEQYAYCVNELNSSVDVWELKDPH--GNIECVQTLDMM 223 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCC-----EE-EEEECTTSSEEEEEETTTTEEEEEESSCTT--SCCEEEEEEECS
T ss_pred EEEEEEecCCCceeeecccccccCCCCC-----cc-eEEECCCCCEEEEEeCCCCEEEEEEecCCC--CcEEEEeecccc
Confidence 799999887 5554 233332211 11 23333 565 66665556699999987522 23444444432
Q ss_pred C-----CceeEEEEEEeCCCEEEEEe-CCCeEEEEECC--CCeEEEE
Q 044435 300 N-----GYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLD--MHRVESF 338 (378)
Q Consensus 300 ~-----~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~--~~~~~~v 338 (378)
. .....-+.+.++|+.+++.. .++.+..||++ +++.+.+
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 1 11234577788898777665 45679999988 5666666
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=87.97 E-value=10 Score=37.84 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=71.1
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-C--CeEEEEEcCCCcEEEEEeccCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-K--GCLSLLCKYSEPWDLWVMKEYG 286 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~--G~L~~~~~~~~~l~iW~l~~~~ 286 (378)
+|.....+..++ .|..+|+.+++...+ .+..+.. .+..+... + |.+.+....++.+.+|.++.
T Consensus 20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~-- 86 (753)
T 3jro_A 20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-- 86 (753)
T ss_dssp SSCCEEEEETTT------EEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEEEETTSCEEEEEEET--
T ss_pred CCCeEEEEECCC------cEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--
Confidence 455555554442 788999886666555 3333221 11133332 3 77777777788999999886
Q ss_pred CCcceEEEEEecC-CCceeEEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Q 044435 287 VKDSWSKLFTMNE-NGYRVIPLAFSSR--GDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~--g~~v~~~~~~~~~~~ydl~~~ 333 (378)
..|.....+.. .. ....+.+.++ |..++....++.+..||++++
T Consensus 87 --~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 87 --GRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp --TEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred --CcccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 34777666655 22 2566777777 888888888888999999887
No 126
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=87.93 E-value=13 Score=32.42 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=64.8
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
+|.....+..+ ..|..||+.+++-... ..... ... .+... +|++.+....++.+.+|-+..
T Consensus 133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~~~------~v~-~~~~spdg~~lasg~~dg~i~iwd~~~---- 195 (321)
T 3ow8_A 133 DSQYLATGTHV------GKVNIFGVESGKKEYSLDTRGK------FIL-SIAYSPDGKYLASGAIDGIINIFDIAT---- 195 (321)
T ss_dssp TSSEEEEECTT------SEEEEEETTTCSEEEEEECSSS------CEE-EEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCceeEEecCCCc------eEE-EEEECCCCCEEEEEcCCCeEEEEECCC----
Confidence 45554444443 2688888876544322 21111 111 23333 677777777777999998764
Q ss_pred cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
-..+..+.. .. ...-+++.++|..++....++.+..||+++.+...
T Consensus 196 --~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 196 --GKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp --TEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred --CcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 123444543 22 24567888889877777777779999998876543
No 127
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=87.91 E-value=13 Score=32.33 Aligned_cols=109 Identities=7% Similarity=0.012 Sum_probs=64.5
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE----CCeEEEEEcCCCcEEEEEecc
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL----KGCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~----~G~L~~~~~~~~~l~iW~l~~ 284 (378)
-+|.+...+..++ .|..||+.+.+.... ..+.. +..+... +|...++...++.+.+|.+..
T Consensus 178 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 178 QEERVVCAGYDNG------DIKLFDLRNMALRWETNIKNG--------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp -CCCEEEEEETTS------EEEEEETTTTEEEEEEECSSC--------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CCCCEEEEEccCC------eEEEEECccCceeeecCCCCc--------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 4666666665543 799999988775433 22211 1133443 577777777777999998876
Q ss_pred CCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCC
Q 044435 285 YGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 285 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~ 333 (378)
.......... ..........-+.+.++|. +++....++.+..||+++.
T Consensus 244 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 244 QHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 3322222211 2222111255677777777 5666677778999998754
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=87.60 E-value=16 Score=33.22 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=98.5
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
..++++|..+++...+...+. ....+.+.|... + ++.... ......+.+++..++..+.+... +.
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~-------~~~~~~~spdg~-~-la~~~~---~~g~~~i~~~d~~~~~~~~l~~~---~~ 267 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR-------HNGAPAFSPDGS-K-LAFALS---KTGSLNLYVMDLASGQIRQVTDG---RS 267 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS-------CEEEEEECTTSS-E-EEEEEC---TTSSCEEEEEETTTCCEEECCCC---SS
T ss_pred cEEEEEECCCCcEEEeecCCC-------cccCEEEcCCCC-E-EEEEEe---cCCCceEEEEECCCCCEEeCcCC---CC
Confidence 479999999998876653321 233566666432 2 222221 12345688889888776655432 11
Q ss_pred cccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-EEEEEcC
Q 044435 197 SWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKY 273 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~ 273 (378)
... .....-+|. |++....+.. ..|..+|+.+.+...+..... ... .+... +|+ |++....
T Consensus 268 --~~~---~~~~spdg~~l~~~s~~~g~----~~i~~~d~~~~~~~~l~~~~~------~~~-~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 268 --NNT---EPTWFPDSQNLAFTSDQAGR----PQVYKVNINGGAPQRITWEGS------QNQ-DADVSSDGKFMVMVSSN 331 (415)
T ss_dssp --CEE---EEEECTTSSEEEEEECTTSS----CEEEEEETTSSCCEECCCSSS------EEE-EEEECTTSSEEEEEEEC
T ss_pred --ccc---ceEECCCCCEEEEEECCCCC----cEEEEEECCCCCEEEEecCCC------ccc-CeEECCCCCEEEEEECc
Confidence 000 001112565 4444432221 368888998876554422211 111 22332 565 4444444
Q ss_pred CC--cEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEe
Q 044435 274 SE--PWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFL 339 (378)
Q Consensus 274 ~~--~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~ 339 (378)
.+ .+.+|.++. .... .+.... ....+.+.++|..|++...+. .++.+|++++..+.+.
T Consensus 332 ~g~~~i~~~d~~~----~~~~---~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 332 GGQQHIAKQDLAT----GGVQ---VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp SSCEEEEEEETTT----CCEE---ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred CCceEEEEEECCC----CCEE---EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 33 555555543 1121 222211 245667888999777766544 6999999999888773
No 129
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=87.43 E-value=14 Score=32.41 Aligned_cols=197 Identities=7% Similarity=0.081 Sum_probs=99.7
Q ss_pred cceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-c
Q 044435 107 NGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-L 184 (378)
Q Consensus 107 ~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-~ 184 (378)
+|-+++ ...+..+.||+..++....+-....+ ......+.+.|.. .+-+ ... ....+.+++..++ .
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h----~~~v~~v~~sp~~-~~l~-s~s------~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGH----ENEVKSVAWAPSG-NLLA-TCS------RDKSVWVWEVDEEDE 139 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCC----SSCEEEEEECTTS-SEEE-EEE------TTSCEEEEEECTTSC
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCC----CCCceEEEEeCCC-CEEE-EEE------CCCeEEEEECCCCCC
Confidence 444333 34566678888776654322221111 1224456666643 3222 222 1235777777653 3
Q ss_pred EEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEE
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~ 261 (378)
+..+... .. .. ..-..+.+ +|.+...+..+. .|..||..+.++..+ .+..+.. .+..+.
T Consensus 140 ~~~~~~~---~~--h~--~~v~~~~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~h~~-----~v~~l~ 201 (345)
T 3fm0_A 140 YECVSVL---NS--HT--QDVKHVVWHPSQELLASASYDD------TVKLYREEEDDWVCCATLEGHES-----TVWSLA 201 (345)
T ss_dssp EEEEEEE---CC--CC--SCEEEEEECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECCCSS-----CEEEEE
T ss_pred eEEEEEe---cC--cC--CCeEEEEECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecCCCC-----ceEEEE
Confidence 3322211 00 00 00011111 455444444432 688888887776543 3332221 111333
Q ss_pred EE-CCeEEEEEcCCCcEEEEEeccCC---------CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 262 VL-KGCLSLLCKYSEPWDLWVMKEYG---------VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 262 ~~-~G~L~~~~~~~~~l~iW~l~~~~---------~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
.. +|++.+....++.+.||.....+ ....|..+..+.. ......-+++.+++..++....++.+.++|.
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 33 67777777777799999864221 1235776666654 3323556677777776777777777888876
Q ss_pred CCC
Q 044435 331 DMH 333 (378)
Q Consensus 331 ~~~ 333 (378)
+++
T Consensus 282 ~~~ 284 (345)
T 3fm0_A 282 DPN 284 (345)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 130
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=87.32 E-value=13 Score=31.73 Aligned_cols=198 Identities=9% Similarity=-0.034 Sum_probs=101.8
Q ss_pred eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435 109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~ 188 (378)
|+........+.++||.++ ...+.... ....++.+++... ++... .....+.+|+..++..+.+
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~---l~v~~-----~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGH---LIACS-----HGLRRLERQREPGGEWESI 105 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCC---EEEEE-----TTTTEEEEECSTTCCEEEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC-------CCcceeeECCCCc---EEEEe-----cCCCeEEEEcCCCCcEEEE
Confidence 3444445667899999988 55554322 1234677776443 22211 1124688888888877655
Q ss_pred CcccCCCccccccccCCccee--eCCeEEEEee---c-C-------CCcccceEEEEEEcCCceeeeecCCCCCCCCCCc
Q 044435 189 KNIKNFPYSWADHSYGGNGAF--VNGALHWLAN---Q-N-------QDEMINDLILAFDLNIETFYSMPMPGFGNEGGGG 255 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~---~-~-------~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~ 255 (378)
... .. .........+. -+|.+|+... . . ........|..+|.. ++...+.-. .. .
T Consensus 106 ~~~---~~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~----~ 173 (296)
T 3e5z_A 106 ADS---FE--GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD--RV----K 173 (296)
T ss_dssp ECE---ET--TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC--CS----S
T ss_pred eec---cC--CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC--CC----C
Confidence 322 11 11111112233 3688777521 0 0 000011378999987 555544211 11 0
Q ss_pred ccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcce-EEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 256 ELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSW-SKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 256 ~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
-. .++.. +|++.++......+.+|.++.. ... .....+........-+++.++|. +++.. ...+..||++++
T Consensus 174 ~~-gi~~s~dg~~lv~~~~~~~i~~~~~~~~---g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~~~~~g~ 247 (296)
T 3e5z_A 174 PN-GLAFLPSGNLLVSDTGDNATHRYCLNAR---GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHVLTPDGD 247 (296)
T ss_dssp EE-EEEECTTSCEEEEETTTTEEEEEEECSS---SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEEECTTSC
T ss_pred Cc-cEEECCCCCEEEEeCCCCeEEEEEECCC---CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEEECCCCC
Confidence 01 33443 6766554444457777777632 234 22233321111123466777888 66666 566999999988
Q ss_pred eEEEEeE
Q 044435 334 RVESFLV 340 (378)
Q Consensus 334 ~~~~v~~ 340 (378)
..+.+..
T Consensus 248 ~~~~~~~ 254 (296)
T 3e5z_A 248 ELGRVLT 254 (296)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 7777643
No 131
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.31 E-value=14 Score=32.28 Aligned_cols=204 Identities=10% Similarity=0.026 Sum_probs=104.1
Q ss_pred EEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecC-CCCeEEEEEEEecCCCcceEEEEEE
Q 044435 101 IIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVG-SDDYKLVRIHVFKSPVYHIEATVYG 179 (378)
Q Consensus 101 ~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~-~~~ykvv~~~~~~~~~~~~~~~vys 179 (378)
.+.++.+|.+.+.+......++|..+++...--.... ......+.+++. .+.+-+.+ . ....+.+|+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~-s------~dg~i~~wd 155 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS-----ANEIIYMYGHNEVNTEYFIWA-D------NRGTIGFQS 155 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC-----SSCEEEEECCC---CCEEEEE-E------TTCCEEEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC-----CCCEEEEEcCCCCCCCEEEEE-e------CCCcEEEEE
Confidence 3566678888877777778888888877332211111 112445666662 33333322 2 134688888
Q ss_pred cCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCC-CCCCCCCcccc
Q 044435 180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPG-FGNEGGGGELS 258 (378)
Q Consensus 180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~-~~~~~~~~~~~ 258 (378)
.+++.-...... .. .. ....-...-+|.+...+..++ .|..+|+.+.+-....+.. +.. .+.
T Consensus 156 ~~~~~~~~~~~~---~~--~~-~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~~~~~~~~~~~h~~-----~v~ 218 (343)
T 3lrv_A 156 YEDDSQYIVHSA---KS--DV-EYSSGVLHKDSLLLALYSPDG------ILDVYNLSSPDQASSRFPVDEEA-----KIK 218 (343)
T ss_dssp SSSSCEEEEECC---CS--SC-CCCEEEECTTSCEEEEECTTS------CEEEEESSCTTSCCEECCCCTTS-----CEE
T ss_pred CCCCcEEEEEec---CC--CC-ceEEEEECCCCCEEEEEcCCC------EEEEEECCCCCCCccEEeccCCC-----CEE
Confidence 877654322111 10 00 001111222577666655543 7999999877643122222 111 111
Q ss_pred eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEE--EEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEEC--CC
Q 044435 259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKL--FTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHL--DM 332 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~--~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl--~~ 332 (378)
.+... +|...+... ++.+.||-+............ +..+. ....+++.++|..++.... +..+..|+. ..
T Consensus 219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKT---GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccc---cceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 33433 566555555 449999988763221111100 00110 0124777888997777665 666777766 55
Q ss_pred CeEEE
Q 044435 333 HRVES 337 (378)
Q Consensus 333 ~~~~~ 337 (378)
+.|+.
T Consensus 295 ~~~~~ 299 (343)
T 3lrv_A 295 KNWTK 299 (343)
T ss_dssp CSEEE
T ss_pred cceEe
Confidence 66776
No 132
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=87.30 E-value=12 Score=33.67 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.+...+..+. .|..+|+.+++..... ..+.. .+..+... +|.+.+....++.+.+|.+.....
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-- 173 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFNLQREID-QAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-- 173 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSCEEEEET-TSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--
T ss_pred CCCEEEEEECCC------CEEEEeCCCcceeeec-ccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--
Confidence 566655555442 6889998877664442 11111 11033333 677777777777999998875321
Q ss_pred ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
...+........-+.+.++|..++....++.+..||+++++....
T Consensus 174 ----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 174 ----PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp ----CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ----ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 122222111255677888899787777788899999998875544
No 133
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=87.16 E-value=26 Score=35.00 Aligned_cols=198 Identities=12% Similarity=0.037 Sum_probs=100.6
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
+|-|.+......++.+||.|+++..++..... ......+..|... . +.+.. ...+..|+..++.|+
T Consensus 417 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~v~~i~~d~~g-~---lwigt------~~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 417 EGNLWFGTYLGNISYYNTRLKKFQIIELEKNE----LLDVRVFYEDKNK-K---IWIGT------HAGVFVIDLASKKVI 482 (781)
T ss_dssp TSCEEEEETTEEEEEECSSSCEEEECCSTTTC----CCCEEEEEECTTS-E---EEEEE------TTEEEEEESSSSSCC
T ss_pred CCCEEEEeccCCEEEEcCCCCcEEEeccCCCC----CCeEEEEEECCCC-C---EEEEE------CCceEEEeCCCCeEE
Confidence 45454444445788889988888777543100 1123344444321 1 22222 135778888888887
Q ss_pred ecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-E
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-L 263 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~ 263 (378)
..... +.. ......-.+++. +|. .|++..+. .+..||..++++..+..+...... ... .+.+ .
T Consensus 483 ~~~~~---~~~-~~~~~~i~~i~~d~~g~-lWigt~~~------Gl~~~~~~~~~~~~~~~~~~l~~~--~i~-~i~~d~ 548 (781)
T 3v9f_A 483 HHYDT---SNS-QLLENFVRSIAQDSEGR-FWIGTFGG------GVGIYTPDMQLVRKFNQYEGFCSN--TIN-QIYRSS 548 (781)
T ss_dssp EEECT---TTS-SCSCSCEEEEEECTTCC-EEEEESSS------CEEEECTTCCEEEEECTTTTCSCS--CEE-EEEECT
T ss_pred ecccC---ccc-ccccceeEEEEEcCCCC-EEEEEcCC------CEEEEeCCCCeEEEccCCCCCCCC--eeE-EEEECC
Confidence 65432 100 000011112333 354 46665532 588999999999887544333211 111 3444 3
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-CCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-ENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
+|.|.+.+. .+- +..++.. ...+.....-+ +......-+....+|. +.+....+ +..||+++++++...
T Consensus 549 ~g~lWi~T~-~Gl--v~~~d~~--~~~~~~~~~~~gl~~~~i~~i~~d~~g~-lW~~t~~G-l~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 549 KGQMWLATG-EGL--VCFPSAR--NFDYQVFQRKEGLPNTHIRAISEDKNGN-IWASTNTG-ISCYITSKKCFYTYD 618 (781)
T ss_dssp TSCEEEEET-TEE--EEESCTT--TCCCEEECGGGTCSCCCCCEEEECSSSC-EEEECSSC-EEEEETTTTEEEEEC
T ss_pred CCCEEEEEC-CCc--eEEECCC--CCcEEEccccCCCCCceEEEEEECCCCC-EEEEcCCc-eEEEECCCCceEEec
Confidence 677777664 211 1333321 12233221111 1111123344444676 77776544 999999999988874
No 134
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=86.73 E-value=18 Score=32.77 Aligned_cols=189 Identities=13% Similarity=0.076 Sum_probs=93.1
Q ss_pred cceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435 107 NGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW 185 (378)
Q Consensus 107 ~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W 185 (378)
+|-+++ ...+..+.|||..+++....-... ......+.+++.. .+ ++... ....+.+|+..++.-
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h------~~~V~~v~~~~~~-~~-l~sgs------~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDHSG-KL-LASCS------ADMTIKLWDFQGFEC 184 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCC------SSCEEEEEECTTS-SE-EEEEE------TTSCCCEEETTSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEecc------CCcEEEEEEcCCC-CE-EEEEe------CCCeEEEEeCCCCce
Confidence 444433 346678999999988754321111 1123455665543 32 22222 123466777655422
Q ss_pred EecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-
Q 044435 186 RRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV- 262 (378)
Q Consensus 186 ~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~- 262 (378)
.. .. .. .. ..-.++.+ +|.....+..+ ..|..+|+.++..... +..+.. ... .+..
T Consensus 185 ~~--~~---~~--h~--~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~-~~~h~~----~v~-~~~~~ 243 (410)
T 1vyh_C 185 IR--TM---HG--HD--HNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT-FTGHRE----WVR-MVRPN 243 (410)
T ss_dssp EE--CC---CC--CS--SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE-EECCSS----CEE-EEEEC
T ss_pred eE--EE---cC--CC--CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE-EeCCCc----cEE-EEEEC
Confidence 11 11 00 00 00012222 45555545444 2799999987654222 111111 111 2222
Q ss_pred ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEe--------------------CCCEEEEEeCC
Q 044435 263 LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSS--------------------RGDKVLFQKNS 322 (378)
Q Consensus 263 ~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--------------------~g~~v~~~~~~ 322 (378)
.+|.+.+....++.+.+|.+.... ....+.........+.+.+ +|..++....+
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred CCCCEEEEEcCCCeEEEEECCCCc------eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 267877777777899999876421 1122222111122333333 25666667777
Q ss_pred CeEEEEECCCCeEE
Q 044435 323 KDHCWYHLDMHRVE 336 (378)
Q Consensus 323 ~~~~~ydl~~~~~~ 336 (378)
+.+..||+++++..
T Consensus 318 ~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 318 KTIKMWDVSTGMCL 331 (410)
T ss_dssp SEEEEEETTTTEEE
T ss_pred CeEEEEECCCCceE
Confidence 78999999887643
No 135
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=86.69 E-value=15 Score=31.90 Aligned_cols=199 Identities=10% Similarity=0.018 Sum_probs=96.5
Q ss_pred eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|- |+....+..+.|||..+++...+.... .....+.+.+..+.-.++... ....+.+|+.+++
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD-------APVKTIHWIKAPNYSCVMTGS------WDKTLKFWDTRSS 161 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-------SCEEEEEEEECSSCEEEEEEE------TTSEEEEECSSCS
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCceeecccc-------CceEEEEEEeCCCCCEEEEcc------CCCcEEEEECCCC
Confidence 33554 444446677899999998877643211 123345553332222233322 1346888887765
Q ss_pred cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee--eeecCCCCCCCCCCcccceEE
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF--YSMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~--~~i~lP~~~~~~~~~~~~~l~ 261 (378)
.-.. .. .. . .....+...+.....+..+ ..+..||+.+..- ..+..+.... .. .+.
T Consensus 162 ~~~~--~~---~~--~---~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~----~~--~~~ 219 (368)
T 3mmy_A 162 NPMM--VL---QL--P---ERCYCADVIYPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKHQ----HR--CVA 219 (368)
T ss_dssp SCSE--EE---EC--S---SCEEEEEEETTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSSC----EE--EEE
T ss_pred cEEE--EE---ec--C---CCceEEEecCCeeEEEeCC------CcEEEEEeccccchhhhccccccCC----Cc--eEE
Confidence 3111 01 00 0 0011222223333444333 2588888876543 3332222211 11 112
Q ss_pred EE-CC----eEEEEEcCCCcEEEEEeccCCC-CcceEEEE-Eec-CC--C----ceeEEEEEEeCCCEEEEEeCCCeEEE
Q 044435 262 VL-KG----CLSLLCKYSEPWDLWVMKEYGV-KDSWSKLF-TMN-EN--G----YRVIPLAFSSRGDKVLFQKNSKDHCW 327 (378)
Q Consensus 262 ~~-~G----~L~~~~~~~~~l~iW~l~~~~~-~~~W~~~~-~i~-~~--~----~~~~~~~~~~~g~~v~~~~~~~~~~~ 327 (378)
.. ++ ...++...++.+.+|.++.... ........ .-. .. . ....-+++.++|..++....++.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence 11 21 2244555556999999876321 11111110 000 00 0 12555677788887777777888999
Q ss_pred EECCCCeEEEE
Q 044435 328 YHLDMHRVESF 338 (378)
Q Consensus 328 ydl~~~~~~~v 338 (378)
||+++++....
T Consensus 300 wd~~~~~~~~~ 310 (368)
T 3mmy_A 300 WDKDARTKLKT 310 (368)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCcEEEE
Confidence 99998765433
No 136
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=86.38 E-value=20 Score=32.87 Aligned_cols=65 Identities=5% Similarity=-0.134 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
|++.+....++.+.||.+.... - +..+.. ......-+++. +|..++....++.+..||+++++..
T Consensus 210 ~~~l~s~~~d~~i~vwd~~~~~----~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 210 HQFIITSDRDEHIKISHYPQCF----I--VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp CEEEEEEETTSCEEEEEESCTT----C--EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred CcEEEEEcCCCcEEEEECCCCc----e--eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence 7777777777799999987521 1 222121 21225567777 8987888887888999999988743
No 137
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.36 E-value=16 Score=34.82 Aligned_cols=187 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
+++++.........++|..|++...|...+ . ..+.++|.+...-...-.. .....+.+++..++.++
T Consensus 122 ~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~---~~~~~spDG~~la~~~~~~----~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 122 EAVVFTGATEDRVALYALDGGGLRELARLP------G---FGFVSDIRGDLIAGLGFFG----GGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp SCEEEEEECSSCEEEEEEETTEEEEEEEES------S---CEEEEEEETTEEEEEEEEE----TTEEEEEEEETTTCCCE
T ss_pred CeEEEEecCCCCceEEEccCCcEEEeecCC------C---ceEEECCCCCEEEEEEEcC----CCCeEEEEEcCCCCCce
Q ss_pred ecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCC--------cccc
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGG--------GELS 258 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~--------~~~~ 258 (378)
.+... +. ........=||+..+....+... .|..+|+.+.+...+.-......... +..
T Consensus 189 ~l~~~---~~-----~~~~~~~SpDG~~l~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp- 255 (582)
T 3o4h_A 189 VFDSG---EG-----SFSSASISPGMKVTAGLETAREA----RLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP- 255 (582)
T ss_dssp EECCS---SC-----EEEEEEECTTSCEEEEEECSSCE----EEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT-
T ss_pred EeecC---CC-----ccccceECCCCCEEEEccCCCee----EEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC-
Q ss_pred eEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCe---EEEEECCCCe
Q 044435 259 GVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKD---HCWYHLDMHR 334 (378)
Q Consensus 259 ~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~---~~~ydl~~~~ 334 (378)
+|++++....++++.||.+ ..... .. .. ...+.+. +|..++....+.. ++.+|+++ +
T Consensus 256 -----dg~~~~~~~~~g~~~l~~~------g~~~~----~~~~~--v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~ 316 (582)
T 3o4h_A 256 -----DGRLAVVARREGRSAVFID------GERVE----APQGN--HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-P 316 (582)
T ss_dssp -----TSCEEEEEEETTEEEEEET------TEEEC----CCSSE--EEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-E
T ss_pred -----CCcEEEEEEcCCcEEEEEE------CCeec----cCCCc--eEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-c
Q ss_pred EEEE
Q 044435 335 VESF 338 (378)
Q Consensus 335 ~~~v 338 (378)
.+.+
T Consensus 317 ~~~l 320 (582)
T 3o4h_A 317 LLEG 320 (582)
T ss_dssp EECC
T ss_pred eEEE
No 138
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=86.33 E-value=18 Score=32.44 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~ 287 (378)
+|.....+..+ ..|..+|+.+.+.... ..... .. .+... +|++.+....++.+.+|.+....
T Consensus 176 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~~~-------v~-~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~- 240 (393)
T 1erj_A 176 SGDKLVSGSGD------RTVRIWDLRTGQCSLTLSIEDG-------VT-TVAVSPGDGKYIAAGSLDRAVRVWDSETGF- 240 (393)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC-------EE-EEEECSTTCCEEEEEETTSCEEEEETTTCC-
T ss_pred CCCEEEEecCC------CcEEEEECCCCeeEEEEEcCCC-------cE-EEEEECCCCCEEEEEcCCCcEEEEECCCCc-
Confidence 45544444443 2789999988765433 32211 11 33333 67887777777899999876421
Q ss_pred CcceEEEEEecC-------CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 288 KDSWSKLFTMNE-------NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 288 ~~~W~~~~~i~~-------~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
.+..+.. ......-+.+.++|..++....++.+..||+++.
T Consensus 241 -----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 241 -----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp -----EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred -----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 1222211 1122556777888997777777888999998764
No 139
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=86.32 E-value=20 Score=32.78 Aligned_cols=200 Identities=8% Similarity=-0.085 Sum_probs=101.6
Q ss_pred eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
..+|-|.+.+ ....+.++|+.+++...+..... . .. +.+++..+. ++. .. . .....+.+++..++
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----~--~~-ia~~~~g~~--l~~-~d--~-~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----G--GK-PAVTKDKQR--VYS-IG--W-EGTHTVYVYMKASG 204 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----B--CB-CEECTTSSE--EEE-EB--S-STTCEEEEEEGGGT
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----C--Cc-eeEecCCCc--EEE-Ee--c-CCCceEEEEEcCCC
Confidence 3567666665 45678999999988776643321 1 11 555655431 211 11 1 11126777776543
Q ss_pred -cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435 184 -LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELS 258 (378)
Q Consensus 184 -~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~ 258 (378)
..+.+... +. .. .....++.+ +|.||+ .... ..|..||+.+.....+ ..+...... ..+.
T Consensus 205 ~~~~~~g~~---~~--~~-~~~p~~iav~p~~g~lyv-~d~~------~~I~~~d~~~~~~~~~~~~~~~g~~~--~~P~ 269 (409)
T 3hrp_A 205 WAPTRIGQL---GS--TF-SGKIGAVALDETEEWLYF-VDSN------KNFGRFNVKTQEVTLIKQLELSGSLG--TNPG 269 (409)
T ss_dssp TCEEEEEEC---CT--TS-CSCCCBCEECTTSSEEEE-ECTT------CEEEEEETTTCCEEEEEECCCCSCCC--CSSC
T ss_pred ceeEEeeec---cc--hh-cCCcEEEEEeCCCCeEEE-EECC------CcEEEEECCCCCEEEEecccccCCCC--CCcc
Confidence 23333111 00 00 011123333 689999 3332 3799999987766555 111111110 1100
Q ss_pred -eEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-C-----------CCceeEEEEEEeCCCEEEEEeC--
Q 044435 259 -GVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-E-----------NGYRVIPLAFSSRGDKVLFQKN-- 321 (378)
Q Consensus 259 -~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~-----------~~~~~~~~~~~~~g~~v~~~~~-- 321 (378)
.++.. +|.|+++.....++..| +..+ .-..+..-. . .+....-+++.++|. +++...
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~--~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~ 343 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKI--TPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK 343 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEE--CTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEE--ecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC
Confidence 34444 58999887655554444 3322 111111111 0 122244466667888 666554
Q ss_pred CCeEEEEECCCCeEEEEe
Q 044435 322 SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 322 ~~~~~~ydl~~~~~~~v~ 339 (378)
...+..+|+.++++..+.
T Consensus 344 ~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 344 GYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEe
Confidence 456999998888887774
No 140
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.09 E-value=19 Score=32.36 Aligned_cols=186 Identities=7% Similarity=0.000 Sum_probs=97.1
Q ss_pred cce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435 107 NGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW 185 (378)
Q Consensus 107 ~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W 185 (378)
+|- |+....+..+.|||..+++....-... ......+.+++ . .++... ....+.+|+.++..-
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~---~-~l~~~~------~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGH------QARVGCLSWNR---H-VLSSGS------RSGAIHHHDVRIANH 208 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEEET---T-EEEEEE------TTSEEEEEETTSSSC
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCC------CCceEEEEECC---C-EEEEEc------CCCCEEEEecccCcc
Confidence 443 334445667888888877654322211 11233455543 2 222222 234677888764221
Q ss_pred --EecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435 186 --RRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 186 --~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~ 261 (378)
...... .. . -.++.+ +|.....+..++ .|..+|+.+.+....-.+.... -. .+.
T Consensus 209 ~~~~~~~~---~~--~-----v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~ 266 (401)
T 4aez_A 209 QIGTLQGH---SS--E-----VCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTKTNHNAA-----VK-AVA 266 (401)
T ss_dssp EEEEEECC---SS--C-----EEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEECCCSSC-----CC-EEE
T ss_pred eeeEEcCC---CC--C-----eeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEecCCcce-----EE-EEE
Confidence 111110 00 0 011222 566666665543 6999999875543321111111 11 334
Q ss_pred EE--CCeEEEEEc--CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe--CCCeEEEEECCCCe
Q 044435 262 VL--KGCLSLLCK--YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK--NSKDHCWYHLDMHR 334 (378)
Q Consensus 262 ~~--~G~L~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~--~~~~~~~ydl~~~~ 334 (378)
.. ++.+.+... .++.+.+|-+... .....+.. .. ..-+.+.++|..++... .++.+..||+.+.+
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEECSSC--EEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEeCCCc--EEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 43 235555554 3559999988752 22333333 22 55677788898777754 46779999999987
Q ss_pred EEEE
Q 044435 335 VESF 338 (378)
Q Consensus 335 ~~~v 338 (378)
...+
T Consensus 339 ~~~~ 342 (401)
T 4aez_A 339 LTKQ 342 (401)
T ss_dssp EEEE
T ss_pred ceeE
Confidence 7666
No 141
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.90 E-value=16 Score=31.52 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=59.4
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.+||..... ..|..||...+.-..+..+.. ...++.. +|+|+++........|+.++... .
T Consensus 42 ~g~lyv~d~~~------~~I~~~d~~g~~~~~~~~~~~--------p~gia~~~dG~l~vad~~~~~~~v~~~d~~~--g 105 (306)
T 2p4o_A 42 DGTIFVTNHEV------GEIVSITPDGNQQIHATVEGK--------VSGLAFTSNGDLVATGWNADSIPVVSLVKSD--G 105 (306)
T ss_dssp TSCEEEEETTT------TEEEEECTTCCEEEEEECSSE--------EEEEEECTTSCEEEEEECTTSCEEEEEECTT--S
T ss_pred CCCEEEEeCCC------CeEEEECCCCceEEEEeCCCC--------ceeEEEcCCCcEEEEeccCCcceEEEEcCCC--C
Confidence 68899987544 279999998765444455421 1134443 68888877544444566665321 2
Q ss_pred ceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe
Q 044435 290 SWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR 334 (378)
Q Consensus 290 ~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~ 334 (378)
+...+..++. .. ..-+++..++. +++.. ....++.+|+.+++
T Consensus 106 ~~~~~~~~~~~~~--~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 106 TVETLLTLPDAIF--LNGITPLSDTQ-YLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp CEEEEEECTTCSC--EEEEEESSSSE-EEEEETTTTEEEEEETTTTE
T ss_pred eEEEEEeCCCccc--cCcccccCCCc-EEEEECCCCeEEEEeCCCCc
Confidence 3444444433 32 22233333343 55554 35679999998764
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=85.73 E-value=6.2 Score=34.35 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=61.7
Q ss_pred eeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccC
Q 044435 209 FVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEY 285 (378)
Q Consensus 209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~ 285 (378)
..++.+|...... ..|..+|+.+.+.. .++++..... . .++.. +|+ +++....+..+.+|-++..
T Consensus 8 ~~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~---~---~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 8 KAGHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGP---G---TAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp CTTCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSS---C---EEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cCCCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCC---c---eeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 3456676666554 37999999887664 4466541111 1 33443 565 5565544557777766531
Q ss_pred CCCcceEEEEEecC-C-----CceeEEEEEEeCCCEEEEEeCC------------CeEEEEECCCCe
Q 044435 286 GVKDSWSKLFTMNE-N-----GYRVIPLAFSSRGDKVLFQKNS------------KDHCWYHLDMHR 334 (378)
Q Consensus 286 ~~~~~W~~~~~i~~-~-----~~~~~~~~~~~~g~~v~~~~~~------------~~~~~ydl~~~~ 334 (378)
.....+.. . ......+.+.++|+.+++...+ ..+..||+++++
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 76 ------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp ------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 12223332 1 1112346677889877776633 569999998744
No 143
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=85.63 E-value=11 Score=32.67 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCC--cEEEEEeccCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE--PWDLWVMKEYGV 287 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~--~l~iW~l~~~~~ 287 (378)
+|.+||...... .|..||+.++++..+..+... .+..++.. +|+|++...... .-.|+.++..+.
T Consensus 55 ~g~l~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~------~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFEG------NIFKINPETKEIKRPFVSHKA------NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTTC------EEEEECTTTCCEEEEEECSSS------SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCCEEEEECCCC------EEEEEeCCCCcEEEEeeCCCC------CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 688888765442 799999998887765321111 11134443 688888775441 123444443221
Q ss_pred CcceEEEEEec-C-CCceeEEEEEEeCCCEEEEEeCC-------CeEEEEECCCCeEEEE
Q 044435 288 KDSWSKLFTMN-E-NGYRVIPLAFSSRGDKVLFQKNS-------KDHCWYHLDMHRVESF 338 (378)
Q Consensus 288 ~~~W~~~~~i~-~-~~~~~~~~~~~~~g~~v~~~~~~-------~~~~~ydl~~~~~~~v 338 (378)
.-... +. . ......-+.+.++|. +++.... ..++.||+++++++.+
T Consensus 123 --~~~~~--~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 123 --NLQDI--IEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp --SCEEE--ECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred --EEEEE--EccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 11111 11 1 111244566677887 5555442 4599999988877765
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=85.54 E-value=28 Score=33.94 Aligned_cols=154 Identities=8% Similarity=0.008 Sum_probs=78.7
Q ss_pred cceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCc-eeeeecCCCC
Q 044435 171 YHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIE-TFYSMPMPGF 248 (378)
Q Consensus 171 ~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~ 248 (378)
....+.+++..++.-+.+... .. .......-...-||. ++........ ....|..+|+.++ ....+.....
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTG---EP--KEKFLTNLSWSPDENILYVAEVNRAQ--NECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCC---SC--TTCEEEEEEECTTSSEEEEEEECTTS--CEEEEEEEETTTCCEEEEEEEEEC
T ss_pred CeeEEEEEECCCCceEeeccC---CC--CceeEeeEEEECCCCEEEEEEeCCCC--CeeEEEEEECCCCceeeEEEEccC
Confidence 345788888887765444311 00 000000001122565 4443332211 1247899999887 6655521111
Q ss_pred CCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-C
Q 044435 249 GNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-K 323 (378)
Q Consensus 249 ~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-~ 323 (378)
.... .... .+... +|++.++...++...||.++..+ . ....+.. .......+++.++|+.|++.... .
T Consensus 306 ~~~~-~~~~-~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~--~---~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 306 KHYV-EPLH-PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG--R---LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp SSCC-CCCS-CCEECTTCSSEEEEEECTTSSCEEEEEETTS--C---EEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred CCeE-CccC-CceeecCCCCEEEEEEccCCccEEEEEECCC--C---EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 1000 0000 12332 78866655555688899987422 1 2233333 22223346788888877776543 2
Q ss_pred ----eEEEEECCCCeEEEE
Q 044435 324 ----DHCWYHLDMHRVESF 338 (378)
Q Consensus 324 ----~~~~ydl~~~~~~~v 338 (378)
.++.+|+++++.+.+
T Consensus 379 ~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 379 PLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp TTCBEEEEEETTCCCCEES
T ss_pred CceEEEEEEEcCCCCceec
Confidence 688999988877666
No 145
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=85.52 E-value=21 Score=32.32 Aligned_cols=191 Identities=10% Similarity=-0.029 Sum_probs=92.7
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
.+.|++.. ...+...++.++....+-+. .....++.+|+..+...++- .....+..++..+...+
T Consensus 87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-------~~~~~gl~~d~~~~~ly~~D-------~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-------LENAIALDFHHRRELVFWSD-------VTLDRILRANLNGSNVE 151 (386)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCCEEEECS-------CSCEEEEEEETTTTEEEEEE-------TTTTEEEEEETTSCCEE
T ss_pred cceeEeec-CccceeeccCCCcEEEEecC-------CCccEEEEEecCCCeEEEEe-------CCCCcEEEEecCCCCcE
Confidence 34444442 34567777766655443321 11345788887665433321 12345677777666554
Q ss_pred ecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL 263 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~ 263 (378)
.+... .. ....++.+ +|.|||..... ..|.++|+....-..+. ..... .+..+++.
T Consensus 152 ~~~~~-------~~--~~p~glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~-~~~l~-----~P~giavd 210 (386)
T 3v65_B 152 EVVST-------GL--ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSLE-----KPRAIALH 210 (386)
T ss_dssp EEECS-------SC--SCCCCEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEE-CSSCS-----CEEEEEEE
T ss_pred EEEeC-------CC--CCccEEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEee-cCCCC-----CCcEEEEE
Confidence 43221 11 11224443 68999987654 37999998765433331 11111 11144554
Q ss_pred --CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 264 --KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 --~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
+|.||+..... .-.|+..+-.+... -. .+...+....-+++.++++.|++... ...+..+|+.+...+.+
T Consensus 211 p~~g~ly~td~~~-~~~I~r~~~dG~~~-~~---~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 211 PMEGTIYWTDWGN-TPRIEASSMDGSGR-RI---IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp TTTTEEEEEECSS-SCEEEEEETTSCSC-EE---EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred cCCCeEEEeccCC-CCEEEEEeCCCCCc-EE---EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 67888876544 23445554332211 00 01111112333455444444555443 33477777765544443
No 146
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=85.21 E-value=17 Score=31.08 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=78.3
Q ss_pred ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce-eeeecCCCCCC
Q 044435 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET-FYSMPMPGFGN 250 (378)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i~lP~~~~ 250 (378)
...+.+++..+++=...-.+ +. ......-...++.+|.+..... .+.+||..+.+ -..|+.|....
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l---~~----~~FgeGit~~g~~ly~ltw~~~------~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIEL---GK----RYFGEGISDWKDKIVGLTWKNG------LGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp EEEEEEECTTTCCEEEEEEC---CT----TCCEEEEEEETTEEEEEESSSS------EEEEEETTTCCEEEEEECSSCCC
T ss_pred CceEEEEECCCCcEEEEEec---CC----ccceeEEEEeCCEEEEEEeeCC------EEEEEECccCcEEEEEECCCCce
Confidence 46788999998743222112 11 1111112445778888876553 89999998754 45567664221
Q ss_pred CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-C---ceeEEEEEEeCCCEEEEEeC-CCe
Q 044435 251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-G---YRVIPLAFSSRGDKVLFQKN-SKD 324 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~---~~~~~~~~~~~g~~v~~~~~-~~~ 324 (378)
.++..+++|++... .-.||++|.. +=....+|.. . . ....-+... +|. |+.... ...
T Consensus 131 --------glt~dg~~L~~SdG---s~~i~~iDp~----T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~ 193 (262)
T 3nol_A 131 --------GLTHNDQYLIMSDG---TPVLRFLDPE----SLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNK 193 (262)
T ss_dssp --------CEEECSSCEEECCS---SSEEEEECTT----TCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSE
T ss_pred --------EEecCCCEEEEECC---CCeEEEEcCC----CCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCe
Confidence 34544556777653 2347777753 2233445544 1 1 111123333 675 666653 556
Q ss_pred EEEEECCCCeEEEE-eE
Q 044435 325 HCWYHLDMHRVESF-LV 340 (378)
Q Consensus 325 ~~~ydl~~~~~~~v-~~ 340 (378)
+...|++|+++... ..
T Consensus 194 I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEECTTTCBEEEEEEC
T ss_pred EEEEECCCCcEEEEEEC
Confidence 99999999997544 44
No 147
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=84.97 E-value=23 Score=32.29 Aligned_cols=200 Identities=10% Similarity=0.059 Sum_probs=98.2
Q ss_pred eEEEeecCCcEEEEcCcccce--eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc-E
Q 044435 109 LLALKNYPKGIILLNPLTKKH--RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL-W 185 (378)
Q Consensus 109 Ll~l~~~~~~~~V~NP~t~~~--~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~-W 185 (378)
+|+.......+.|||..++.- ..+.+.... ..+......+.+.+..+.+-+.+ . ....+.+|+.+++. .
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~-~------~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSV-A------DDQKLMIWDTRNNNTS 267 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEE-E------TTSEEEEEETTCSCSS
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEE-e------CCCeEEEEECCCCCCC
Confidence 555555667788998877321 111111100 01122344566766544433332 2 23568889987642 1
Q ss_pred EecCcccCCCccccccccCCcceee--CCe-EEEEeecCCCcccceEEEEEEcCCce--eeeecCCCCCCCCCCcccceE
Q 044435 186 RRIKNIKNFPYSWADHSYGGNGAFV--NGA-LHWLANQNQDEMINDLILAFDLNIET--FYSMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 186 ~~~~~~~~~p~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~~~l 260 (378)
+.+... ......-.++.+ +|. ++..+..++ .|..||+.+.. ...+.. +.. .+..+
T Consensus 268 ~~~~~~-------~~~~~~v~~i~~~p~~~~~l~tg~~dg------~v~vwd~~~~~~~~~~~~~--h~~-----~v~~i 327 (430)
T 2xyi_A 268 KPSHTV-------DAHTAEVNCLSFNPYSEFILATGSADK------TVALWDLRNLKLKLHSFES--HKD-----EIFQV 327 (430)
T ss_dssp SCSEEE-------ECCSSCEEEEEECSSCTTEEEEEETTS------EEEEEETTCTTSCSEEEEC--CSS-----CEEEE
T ss_pred cceeEe-------ecCCCCeEEEEeCCCCCCEEEEEeCCC------eEEEEeCCCCCCCeEEeec--CCC-----CEEEE
Confidence 111000 000000112333 243 565655543 79999988632 222211 111 11023
Q ss_pred EEE-CC-eEEEEEcCCCcEEEEEeccCCCCcc--------eEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEE
Q 044435 261 YVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDS--------WSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYH 329 (378)
Q Consensus 261 ~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~--------W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~yd 329 (378)
... +| .+.+....++.+.||.+...+.... -.++...........-+.+.+++. +++....++.+.+|+
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 333 34 5677777777999999886331100 122333322111255677777887 666677777788888
Q ss_pred CCCCeEE
Q 044435 330 LDMHRVE 336 (378)
Q Consensus 330 l~~~~~~ 336 (378)
+..+.+.
T Consensus 408 ~~~~~~~ 414 (430)
T 2xyi_A 408 MAENVYN 414 (430)
T ss_dssp ECHHHHC
T ss_pred ccccccc
Confidence 8765443
No 148
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=84.81 E-value=17 Score=30.71 Aligned_cols=189 Identities=12% Similarity=0.108 Sum_probs=99.1
Q ss_pred eccceEEEeec--CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 105 SCNGLLALKNY--PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 105 s~~GLl~l~~~--~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
..+|.+.+.+. ...+.++|+..+....+.... .....++.+|+.. ...|. . .....+.+|+...
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~------~~~~~~i~~~~~g-~l~v~---~----~~~~~i~~~~~~g 151 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI------LQHPRGVTVDNKG-RIIVV---E----CKVMRVIIFDQNG 151 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT------CSCEEEEEECTTS-CEEEE---E----TTTTEEEEECTTS
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc------CCCceEEEEeCCC-CEEEE---E----CCCCEEEEEcCCC
Confidence 45777766653 577889996554444443221 1123466777643 32221 1 1134577777654
Q ss_pred CcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l 260 (378)
..-+..... . .. ....++.+ +|.+|+..... ..|..||...+....+..+.... .+..+
T Consensus 152 ~~~~~~~~~---~---~~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~-----~p~~i 212 (286)
T 1q7f_A 152 NVLHKFGCS---K---HL--EFPNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGITN-----YPIGV 212 (286)
T ss_dssp CEEEEEECT---T---TC--SSEEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTSC-----SEEEE
T ss_pred CEEEEeCCC---C---cc--CCcEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCCccC-----CCcEE
Confidence 433333211 0 00 11123444 47877655443 37999999776666554332111 11134
Q ss_pred EEE-CCeEEEEEcCCC-cEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435 261 YVL-KGCLSLLCKYSE-PWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 261 ~~~-~G~L~~~~~~~~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~ 332 (378)
+.. +|.|++...... .+.+|..+ + .-..............-+++.++|. +++...+..+.+|+...
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~~--g---~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQD--G---QLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECTT--S---CEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSC
T ss_pred EECCCCCEEEEeCCCCEEEEEECCC--C---CEEEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEccc
Confidence 443 689998887665 78777532 1 1221122222221244567777887 55556666788887754
No 149
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=84.68 E-value=28 Score=33.15 Aligned_cols=196 Identities=10% Similarity=-0.012 Sum_probs=100.2
Q ss_pred cceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc--CCC
Q 044435 107 NGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL--KVN 183 (378)
Q Consensus 107 ~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss--~~~ 183 (378)
+|.+++.. ....+.|+|+.|++....-+.. . . ..++.+++... |-++. . ....+.+|+. .++
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~---~--~~~v~~spdg~-~l~v~--~-----~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y---A--VHISRMSASGR-YLLVI--G-----RDARIDMIDLWAKEP 212 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T---T--EEEEEECTTSC-EEEEE--E-----TTSEEEEEETTSSSC
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecC--c---c--cceEEECCCCC-EEEEE--C-----CCCeEEEEECcCCCC
Confidence 56665554 4566889999998764321111 0 1 33566666433 32222 1 1257888998 554
Q ss_pred cEEecCcccCCCccccccccCCcceee------CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCC----
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV------NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEG---- 252 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~------~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~---- 252 (378)
. .+... +. +. ...++.+ +|..-+.+.... ..|..+|..+.+. ..++.+......
T Consensus 213 ~--~~~~i---~~--g~---~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 213 T--KVAEI---KI--GI---EARSVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp E--EEEEE---EC--CS---EEEEEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred c--EEEEE---ec--CC---CcceEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccc
Confidence 3 22222 21 11 0112222 566544444322 2789999887654 334543211000
Q ss_pred CCcccceEEEE-CCeEEEEEc-CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEE
Q 044435 253 GGGELSGVYVL-KGCLSLLCK-YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWY 328 (378)
Q Consensus 253 ~~~~~~~l~~~-~G~L~~~~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~y 328 (378)
.......+... +|...++.. ..+++.+|-..+.. . .++..++. .. .+-+++.++|..++.... +..+.++
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~--~--l~~~~i~~~~~--~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--N--LTVTSIGAAPF--LHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS--S--CEEEEEECCSS--CCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC--c--ceeEEeccCcC--ccCceECCCCCEEEEEecCCCeEEEE
Confidence 00011023333 344444444 33477777766532 1 12334444 33 445778889996665543 5579999
Q ss_pred ECCCCeEEEE
Q 044435 329 HLDMHRVESF 338 (378)
Q Consensus 329 dl~~~~~~~v 338 (378)
|++++++...
T Consensus 352 D~~tg~l~~~ 361 (543)
T 1nir_A 352 DSKDRRLSAL 361 (543)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCeEEEe
Confidence 9999987654
No 150
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=84.56 E-value=21 Score=31.57 Aligned_cols=191 Identities=7% Similarity=-0.045 Sum_probs=93.4
Q ss_pred eccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 105 SCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 105 s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+.+|-.++. ..+..+.|||..+++....-... ......+.+.+....+ ++... ....+.+++.+++
T Consensus 136 spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h------~~~V~~~~~~~~~~~~-l~s~s------~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 136 LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH------AAQVTCVAASPHKDSV-FLSCS------EDNRILLWDTRCP 202 (344)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECSSCTTE-EEEEE------TTSCEEEEETTSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc------CCceEEEEecCCCCCc-eeeec------ccccccccccccc
Confidence 445654444 45667899999998765432211 1223345555544333 22222 1245788888765
Q ss_pred cEEe-cCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435 184 LWRR-IKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG 259 (378)
Q Consensus 184 ~W~~-~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~ 259 (378)
.-.. +... .. .....++.+ ++.+...+..+. .|..+|+.+.+... .+..+.. .+..
T Consensus 203 ~~~~~~~~~---~~-----~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~~~-~~~~h~~-----~v~~ 262 (344)
T 4gqb_B 203 KPASQIGCS---AP-----GYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSCVL-SSAVHSQ-----CVTG 262 (344)
T ss_dssp SCEEECC------------CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--CCE-EEECCSS-----CEEE
T ss_pred ceeeeeecc---ee-----eccceeeeecCCCCcceEEeccCC------cEEEEECCCCcEEE-EEcCCCC-----CEEE
Confidence 4322 1111 00 000112222 344554444442 68889988654321 1111111 1113
Q ss_pred EEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEE-EEeCCCeEEEEECCCCeE
Q 044435 260 VYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVL-FQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 260 l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~~ydl~~~~~ 335 (378)
+... +| ++.+....++.+.||-+.. + . ..........+.-++++++|..++ -...++.+..+++.++..
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~---~---~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSL---S---E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTC---C---E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCC---C---c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 3433 45 4555556667999996543 1 1 222222111256677787776444 455677899999987654
No 151
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=84.25 E-value=8.9 Score=38.07 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=57.6
Q ss_pred ceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEE
Q 044435 207 GAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWV 281 (378)
Q Consensus 207 ~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~ 281 (378)
++.+ +|.|||...... ..|..+++.......+-.. ... ....|+.. +|+||++.....+|. +
T Consensus 500 giavDp~~g~ly~td~~~~-----~~I~~~~~dG~~~~~l~~~-~l~-----~PnGlavd~~~~~LY~aD~~~~~I~--~ 566 (699)
T 1n7d_A 500 AIVVDPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTE-NIQ-----WPNGITLDLLSGRLYWVDSKLHSIS--S 566 (699)
T ss_dssp CEECCSSSSCCEECCCSSS-----CCEEBCCSSSCCCCEESCS-SCS-----SCCCEEECTTTCCEEEEETTTTEEE--E
T ss_pred eEEEccCCCcEEEcccCCC-----CeEEEEeCCCCCeeEEEeC-CCC-----CccEEEEeccCCEEEEEecCCCeEE--E
Confidence 4555 689999764321 2688888765443333111 111 01134554 578999886544544 4
Q ss_pred eccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 282 MKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 282 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
++-.+... ..+ +........|.++.-+++.|++... ..+|..+|..+++...+
T Consensus 567 ~d~dG~~~--~~~--~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 567 IDVNGGNR--KTI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp ECSSSSCC--EEE--CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EccCCCce--EEE--EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEE
Confidence 44322111 111 1111111234444434555666543 34699999887765444
No 152
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.16 E-value=17 Score=31.79 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=63.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeec-CCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMP-MPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
+|.+...+..+. .|..+|+.+++...+. .+.... .. .+... +|.+.++...++.+.||-+......
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~~~-----i~-~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSAKSDVE-----YS-SGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEECCCSSCC-----CC-EEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEecCCCCc-----eE-EEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 455555555442 6999999887664432 222111 11 33333 6787777777789999988753211
Q ss_pred cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
...+.. ......-+.+.++|..++... ++.+..||+++.+
T Consensus 206 -----~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 206 -----SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp -----CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred -----ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 012222 222356677888888666666 4479999998765
No 153
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=83.85 E-value=12 Score=31.94 Aligned_cols=108 Identities=8% Similarity=0.035 Sum_probs=61.3
Q ss_pred CCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 211 NGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 211 ~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
+|. +||...... .|..||..++ .+.+..|...- . .++.. +|+|++.......+.+|..+.
T Consensus 38 ~g~~l~~~~~~~~------~i~~~~~~~~-~~~~~~~~~~~------~-~l~~~~dg~l~v~~~~~~~i~~~d~~~---- 99 (296)
T 3e5z_A 38 ARSAVIFSDVRQN------RTWAWSDDGQ-LSPEMHPSHHQ------N-GHCLNKQGHLIACSHGLRRLERQREPG---- 99 (296)
T ss_dssp GGTEEEEEEGGGT------EEEEEETTSC-EEEEESSCSSE------E-EEEECTTCCEEEEETTTTEEEEECSTT----
T ss_pred CCCEEEEEeCCCC------EEEEEECCCC-eEEEECCCCCc------c-eeeECCCCcEEEEecCCCeEEEEcCCC----
Confidence 465 999887653 7999999988 76665543211 1 34443 688877665445666665432
Q ss_pred cceEEEEEe-cC-CCceeEEEEEEeCCCEEEEEeC------------------CCeEEEEECCCCeEEEE
Q 044435 289 DSWSKLFTM-NE-NGYRVIPLAFSSRGDKVLFQKN------------------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 289 ~~W~~~~~i-~~-~~~~~~~~~~~~~g~~v~~~~~------------------~~~~~~ydl~~~~~~~v 338 (378)
......... .. ......-+++.++|. +++... ...++.||.+ ++.+.+
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 123322211 11 111123466677887 555321 2368899987 666555
No 154
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=83.63 E-value=25 Score=31.75 Aligned_cols=209 Identities=12% Similarity=-0.036 Sum_probs=103.2
Q ss_pred eeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 104 GSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 104 ~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
+..+|.|.+.+ ....+..+++.++....+..... ....++++|+..+...+.- .....+++++...
T Consensus 124 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~------~~p~glavd~~~g~lY~~d-------~~~~~I~~~~~dg 190 (386)
T 3v65_B 124 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL------ESPGGLAVDWVHDKLYWTD-------SGTSRIEVANLDG 190 (386)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC------SCCCCEEEETTTTEEEEEE-------TTTTEEEECBTTS
T ss_pred ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC------CCccEEEEEeCCCeEEEEc-------CCCCeEEEEeCCC
Confidence 34567776665 45567788887765444422111 1122667776655433321 1123566666654
Q ss_pred CcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG 259 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~ 259 (378)
..-+.+... . .....++.+ +|.|||...... ..|..+|+....-..+-- .... ....
T Consensus 191 ~~~~~l~~~-------~--l~~P~giavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~~~-~~~~-----~PnG 250 (386)
T 3v65_B 191 AHRKVLLWQ-------S--LEKPRAIALHPMEGTIYWTDWGNT-----PRIEASSMDGSGRRIIAD-THLF-----WPNG 250 (386)
T ss_dssp CSCEEEECS-------S--CSCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEEEEC-SSCS-----CEEE
T ss_pred CceEEeecC-------C--CCCCcEEEEEcCCCeEEEeccCCC-----CEEEEEeCCCCCcEEEEE-CCCC-----Ceee
Confidence 322222111 0 011234444 589999875441 379999988654443311 1111 1114
Q ss_pred EEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEEC-CCCeE
Q 044435 260 VYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHL-DMHRV 335 (378)
Q Consensus 260 l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl-~~~~~ 335 (378)
|+.. +|+||++.....+ |+..+-.+... -. .+.... ..|.++.-+++.+++... ..++..+|. .....
T Consensus 251 lavd~~~~~lY~aD~~~~~--I~~~d~dG~~~-~~---~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHV--IERANLDGSHR-KA---VISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEEGGGTEEEEEETTTTE--EEEECTTSCSC-EE---EECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEeCCCCEEEEEECCCCE--EEEEeCCCCee-EE---EEECCC--CCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence 5554 7899999866554 44454333211 11 111122 234444333444666553 456999994 44445
Q ss_pred EEEeEeC--CcceEEeeecc
Q 044435 336 ESFLVKG--PSDVHVCVDTL 353 (378)
Q Consensus 336 ~~v~~~~--~~~~~~y~~sl 353 (378)
+.|.... +..+.+|.+..
T Consensus 323 ~~i~~~~~~p~gi~v~~~~~ 342 (386)
T 3v65_B 323 EIIRNKLHFPMDIHTLHPQR 342 (386)
T ss_dssp EEEECSCSCCCCEEEESGGG
T ss_pred EEEccCCCCCceEEEEchhc
Confidence 5553221 22566665543
No 155
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=83.52 E-value=20 Score=30.48 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=38.2
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
|.+|+|... .+..+.|||..|++...+-....+ ......+.+.+.. .+-+.+ . ....+.+++.+++.
T Consensus 34 S~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~----~~~V~~v~~~~~~-~~l~sg-s------~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 34 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKEG-NYLAVG-T------SSAEVQLWDVQQQK 100 (318)
T ss_dssp CTTSEEEEE-ETTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTTS-SEEEEE-E------TTSEEEEEETTTTE
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCC----CCeEEEEEECCCC-CEEEEE-E------CCCcEEEeecCCce
Confidence 456765444 456799999999987654332221 1223456665543 333332 1 13467888887764
No 156
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=83.44 E-value=19 Score=32.36 Aligned_cols=69 Identities=7% Similarity=-0.003 Sum_probs=46.8
Q ss_pred CCeEEEEEcCC-------CcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEe-CCCeEEEEECCCC
Q 044435 264 KGCLSLLCKYS-------EPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQK-NSKDHCWYHLDMH 333 (378)
Q Consensus 264 ~G~L~~~~~~~-------~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~-~~~~~~~ydl~~~ 333 (378)
+++||+..... ..-.||+++- .+...+.+|+. .. ..-+.+.++|+ .++... .++.+.+||.++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~~--p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGHD--VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCCC--cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 35777765421 1236888875 35777788876 43 45677788998 555554 3567999999998
Q ss_pred eEEEE
Q 044435 334 RVESF 338 (378)
Q Consensus 334 ~~~~v 338 (378)
+..+.
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 87654
No 157
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=83.30 E-value=19 Score=30.23 Aligned_cols=195 Identities=10% Similarity=0.018 Sum_probs=100.1
Q ss_pred EeeeccceEEEeec-CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKNY-PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~~-~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+....+|-+.+... ...+.++||. ++...++.+.. .....++.+|+.. ...+. . . ....+..|+.
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v~---~-~---~~~~i~~~~~ 85 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP-----DAKVMCLTISSDG-EVWFT---E-N---AANKIGRITK 85 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST-----TCCEEEEEECTTS-CEEEE---E-T---TTTEEEEECT
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc-----cCceeeEEECCCC-CEEEe---C-C---CCCeEEEECC
Confidence 44445677666653 5678899998 77665543211 1123456666543 22221 1 1 1234666665
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS 258 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~ 258 (378)
. +..+.... |. . .....++.+ +|.+|+..... ..|..+|. +.+...+.+|..... -.
T Consensus 86 ~-g~~~~~~~----~~--~--~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~~~~~~~~----~~- 144 (299)
T 2z2n_A 86 K-GIIKEYTL----PN--P--DSAPYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYELPNKGSY----PS- 144 (299)
T ss_dssp T-SCEEEEEC----SS--T--TCCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTTCC----EE-
T ss_pred C-CcEEEEeC----CC--c--CCCceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEecCCCCCCC----Cc-
Confidence 4 44443321 11 0 011123443 57776654433 27999999 666666655532211 11
Q ss_pred eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEE
Q 044435 259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVE 336 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~ 336 (378)
.++.. +|+|++.......+. .++.. ...... .++.......-+++.++|. +++... ...+..||+ +++++
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~--~~~~~---g~~~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIG--RITES---GDITEF-KIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEE--EECTT---CCEEEE-ECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE
T ss_pred eEEEcCCCCEEEEeCCCCEEE--EEcCC---CcEEEe-eCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEE
Confidence 34444 688888775444443 34431 123221 1222221234456666777 566553 456999999 77777
Q ss_pred EEe
Q 044435 337 SFL 339 (378)
Q Consensus 337 ~v~ 339 (378)
.+.
T Consensus 217 ~~~ 219 (299)
T 2z2n_A 217 EFK 219 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 158
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=83.30 E-value=24 Score=31.33 Aligned_cols=196 Identities=10% Similarity=0.067 Sum_probs=101.0
Q ss_pred eeccceE-EEee--cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 104 GSCNGLL-ALKN--YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 104 ~s~~GLl-~l~~--~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
-|-+|-+ .+.. .+..+.|||+.+++......... . ...+.|.|.+ .+-+. .. ...+.++..
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~-----~--V~~v~fspdg-~~l~s--~s------~~~~~~~~~ 204 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG-----E--VKDLHFSTDG-KVVAY--IT------GSSLEVIST 204 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS-----C--CCEEEECTTS-SEEEE--EC------SSCEEEEET
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC-----c--eEEEEEccCC-ceEEe--cc------ceeEEEEEe
Confidence 3445643 3433 34668899999988765543211 1 2345565543 22222 11 123455555
Q ss_pred CCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCCCccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGGGGEL 257 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~ 257 (378)
.++.-...... .. .......-...-+|.....+..+... ...+..+|......... .+..+.. .+
T Consensus 205 ~~~~~~~~~~~---~~--~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~V 272 (365)
T 4h5i_A 205 VTGSCIARKTD---FD--KNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFK-----GI 272 (365)
T ss_dssp TTCCEEEEECC---CC--TTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCS-----CE
T ss_pred ccCcceeeeec---CC--CCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCC-----Ce
Confidence 55433221110 00 00000011122356666555443211 12466667665544332 2222221 11
Q ss_pred ceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 258 SGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 258 ~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
..+... +|++.+....++.+.||-++. ...+..+.. ....+.-+++.+||..++-...++.+-++|+..+
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~------~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKD------LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTT------TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCC------CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 133333 788888777778999998764 334455433 3333677888999997777777888999997543
No 159
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=82.78 E-value=33 Score=32.46 Aligned_cols=105 Identities=9% Similarity=-0.001 Sum_probs=64.3
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCC-CCCCCCCcccceEEEE-----------CCeEEEEEcCCCcEE
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPG-FGNEGGGGELSGVYVL-----------KGCLSLLCKYSEPWD 278 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~-~~~~~~~~~~~~l~~~-----------~G~L~~~~~~~~~l~ 278 (378)
+|.+...+..+. .|..||+.+.+.... +.. +.. .+..+... +|++.++...++.+.
T Consensus 499 ~g~~l~~~~~dg------~i~iw~~~~~~~~~~-~~~~h~~-----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 499 SETYIAAGDVMG------KILLYDLQSREVKTS-RWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEC-CSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred CCCEEEEcCCCC------eEEEeeCCCCcceeE-eecCCCC-----ceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 677666665543 699999987655332 221 111 11133332 678777777778999
Q ss_pred EEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 279 LWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 279 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
||.++... .....+........-+.+.++|. ++....++.+..+|++++
T Consensus 567 iw~~~~~~-----~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 567 IYSVKRPM-----KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEESSCTT-----CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred EEECCCCc-----eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99998632 12233333112355678888998 777777888999998753
No 160
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=82.62 E-value=36 Score=32.86 Aligned_cols=195 Identities=9% Similarity=-0.064 Sum_probs=100.4
Q ss_pred CcEEEEcCcc------cceeecC-CCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC--CCcceEEEEEEcC-CCc--
Q 044435 117 KGIILLNPLT------KKHRVLP-KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--PVYHIEATVYGLK-VNL-- 184 (378)
Q Consensus 117 ~~~~V~NP~t------~~~~~LP-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--~~~~~~~~vyss~-~~~-- 184 (378)
..++++|..+ ++...|. .... ....+.+.|.. .+ |+....... .-....+.+++.. ++.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~SpDG-~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHR-------FVTGPRLSPDG-RQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSS-------EECCCEECTTS-SE-EEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCC-------cccCceECCCC-CE-EEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 4689999998 7777665 3221 11233444432 22 222222111 0123578888888 563
Q ss_pred -EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcc--cceE
Q 044435 185 -WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGE--LSGV 260 (378)
Q Consensus 185 -W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~--~~~l 260 (378)
.+.+... . ..........-||.+|+.+..+. ...|..+|+.++++..+ ........ ..+. ...+
T Consensus 232 ~~~~l~~~---~----~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~-p~w~~~~~~~ 299 (662)
T 3azo_A 232 DTRTLLGG---P----EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAG-PLWTPGMRWF 299 (662)
T ss_dssp EEEEEEEE---T----TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSC-CCCSTTCCSE
T ss_pred ccEEeCCC---C----CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccC-ccccccCceE
Confidence 3333211 0 00000111123788888776542 13799999877777655 32222111 0111 1134
Q ss_pred EEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCC---eEEEEECCCCeE
Q 044435 261 YVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSK---DHCWYHLDMHRV 335 (378)
Q Consensus 261 ~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~---~~~~ydl~~~~~ 335 (378)
... +|++.+.... +...||.++-.+ .. ...+.........+. ..+|+.+++.. ... .++.+|+++++.
T Consensus 300 ~~~~~~~~~~~~~~-~~~~l~~~d~~~--~~---~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 300 APLANGLIAVVHGK-GAAVLGILDPES--GE---LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EECTTSCEEEEEBS-SSCEEEEEETTT--TE---EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eEeCCCEEEEEEEc-CccEEEEEECCC--Cc---EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 444 6888888777 888999987532 12 233433111122231 33555444443 322 589999999998
Q ss_pred EEEe
Q 044435 336 ESFL 339 (378)
Q Consensus 336 ~~v~ 339 (378)
+.+.
T Consensus 373 ~~l~ 376 (662)
T 3azo_A 373 RTIG 376 (662)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8883
No 161
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.53 E-value=18 Score=33.06 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=61.6
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCC
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~ 287 (378)
-+|.|||..... ..|..+|+.+.+...+..... .. .++.. +| .|++...... ..||.++..+
T Consensus 140 ~~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~~-------~~-~ia~~~~g~~l~~~d~~~~-~~I~~~d~~~- 203 (409)
T 3hrp_A 140 GNNTVLAYQRDD------PRVRLISVDDNKVTTVHPGFK-------GG-KPAVTKDKQRVYSIGWEGT-HTVYVYMKAS- 203 (409)
T ss_dssp STTEEEEEETTT------TEEEEEETTTTEEEEEEETCC-------BC-BCEECTTSSEEEEEBSSTT-CEEEEEEGGG-
T ss_pred CCCCEEEEecCC------CcEEEEECCCCEEEEeeccCC-------CC-ceeEecCCCcEEEEecCCC-ceEEEEEcCC-
Confidence 368999987654 379999999877766622211 01 12222 34 4555443322 2566666532
Q ss_pred CcceE--EEEEecC-CCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 288 KDSWS--KLFTMNE-NGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 288 ~~~W~--~~~~i~~-~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.|. ....+.. ......-+++.+ +|. +++......++.||++++..+.+
T Consensus 204 --~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 204 --GWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp --TTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEE
T ss_pred --CceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEE
Confidence 233 2212222 222234466777 455 66665556799999998876665
No 162
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=81.85 E-value=46 Score=33.50 Aligned_cols=173 Identities=14% Similarity=0.038 Sum_probs=90.9
Q ss_pred EEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCc
Q 044435 148 GFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDE 224 (378)
Q Consensus 148 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~ 224 (378)
++++|...+..++.- .....+++++.....-+.+... . .....++.+ +|.|||......
T Consensus 475 GLAvD~~~~~LY~tD-------~~~~~I~v~~ldG~~~~~l~~~-------~--l~~P~gIaVDp~~g~LYwtD~g~~-- 536 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTD-------SVLGTVSVADTKGVKRKTLFRE-------N--GSKPRAIVVDPVHGFMYWTDWGTP-- 536 (791)
T ss_dssp EEEEETTTTEEEEEE-------TTTTEEEEEETTSSSEEEEEEC-------T--TCCEEEEEEETTTTEEEEEECSSS--
T ss_pred eeeeeecCCcEEEEe-------cCCCeEEEEeCCCCeEEEEEeC-------C--CCCcceEEEecCCCCEEEecCCCC--
Confidence 677787665433221 1234678888765544443211 0 112335666 589999874432
Q ss_pred ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCc
Q 044435 225 MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGY 302 (378)
Q Consensus 225 ~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 302 (378)
..|..+++....-..+-. .... .+..|+.. +|+||++..... .||+.+-.+. ...+.+. -...+
T Consensus 537 ---~~I~~~~~dG~~~~~lv~-~~l~-----~P~GLavD~~~~~LYwaD~~~~--~I~~~d~dG~-~~~~v~~-~~~~l- 602 (791)
T 3m0c_C 537 ---AKIKKGGLNGVDIYSLVT-ENIQ-----WPNGITLDLLSGRLYWVDSKLH--SISSIDVNGG-NRKTILE-DEKRL- 602 (791)
T ss_dssp ---CEEEEEETTSCCEEEEEC-SSCS-----CEEEEEEETTTTEEEEEETTTT--EEEEEETTSC-SCEEEEE-CTTTT-
T ss_pred ---CeEEEEecCCCceEEEEe-CCCC-----CceEEEEecCCCeEEEEeCCCC--cEEEEecCCC-ceEEEec-CCCcc-
Confidence 379999998655544411 1111 11145554 789999976544 4555554332 2222221 00122
Q ss_pred eeEEEEEEeCCCEEEEEeCC-CeEEEEECCCCeEEEEeEeC---CcceEEeeecc
Q 044435 303 RVIPLAFSSRGDKVLFQKNS-KDHCWYHLDMHRVESFLVKG---PSDVHVCVDTL 353 (378)
Q Consensus 303 ~~~~~~~~~~g~~v~~~~~~-~~~~~ydl~~~~~~~v~~~~---~~~~~~y~~sl 353 (378)
..|+++...++.|++.... ..++.+|..+++-..+-..+ +..+.+|.+..
T Consensus 603 -~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 603 -AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 656 (791)
T ss_dssp -SSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred -CCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence 4466665556657766543 45888997666433332233 23666666554
No 163
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=81.11 E-value=43 Score=32.70 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=57.8
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL 307 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 307 (378)
.|..+|+.+.+.... +..+.. .+..+... +|++.+....++.+.||-+... ..+..+... .....+
T Consensus 542 ~v~vwd~~~~~~~~~-~~~h~~-----~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~------~~~~~~~~~-~~v~~~ 608 (694)
T 3dm0_A 542 TVKVWNLSNCKLRST-LAGHTG-----YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG------KKLYSLEAN-SVIHAL 608 (694)
T ss_dssp CEEEEETTTCCEEEE-ECCCSS-----CEEEEEECTTSSEEEEEETTSBCEEEETTTT------EEEECCBCS-SCEEEE
T ss_pred eEEEEECCCCcEEEE-EcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------ceEEEecCC-CcEEEE
Confidence 688999987655432 111111 11133443 6788877777789999988752 123333331 125667
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 308 AFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
++.+++..+... .+..+..||+++++...
T Consensus 609 ~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 609 CFSPNRYWLCAA-TEHGIKIWDLESKSIVE 637 (694)
T ss_dssp EECSSSSEEEEE-ETTEEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEE-cCCCEEEEECCCCCChh
Confidence 788888844444 45569999999987543
No 164
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=80.43 E-value=25 Score=29.62 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=86.6
Q ss_pred eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcc
Q 044435 146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEM 225 (378)
Q Consensus 146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~ 225 (378)
.-|+.|+. . .+... .+......+.+++..++.=...-.+ |. . .....-+..++.+|.+.....
T Consensus 23 tqGL~~~~---~--~Lyes--tG~~g~S~v~~vD~~tgkv~~~~~l---~~--~--~fgeGi~~~~~~ly~ltw~~~--- 85 (243)
T 3mbr_X 23 TEGLFYLR---G--HLYES--TGETGRSSVRKVDLETGRILQRAEV---PP--P--YFGAGIVAWRDRLIQLTWRNH--- 85 (243)
T ss_dssp EEEEEEET---T--EEEEE--ECCTTSCEEEEEETTTCCEEEEEEC---CT--T--CCEEEEEEETTEEEEEESSSS---
T ss_pred cccEEEEC---C--EEEEE--CCCCCCceEEEEECCCCCEEEEEeC---CC--C--cceeEEEEeCCEEEEEEeeCC---
Confidence 44777775 2 22222 2223356889999998744332222 21 1 111223456788999876653
Q ss_pred cceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC--
Q 044435 226 INDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG-- 301 (378)
Q Consensus 226 ~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~-- 301 (378)
.+.+||..+.+- ..++.|... + .|+..+++|++... .. .|+++|.. +=..+.+|.. ..
T Consensus 86 ---~v~v~D~~tl~~~~ti~~~~~G-----w---glt~dg~~L~vSdg-s~--~l~~iDp~----t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 86 ---EGFVYDLATLTPRARFRYPGEG-----W---ALTSDDSHLYMSDG-TA--VIRKLDPD----TLQQVGSIKVTAGGR 147 (243)
T ss_dssp ---EEEEEETTTTEEEEEEECSSCC-----C---EEEECSSCEEEECS-SS--EEEEECTT----TCCEEEEEECEETTE
T ss_pred ---EEEEEECCcCcEEEEEeCCCCc-----e---EEeeCCCEEEEECC-CC--eEEEEeCC----CCeEEEEEEEccCCc
Confidence 899999987544 556666421 1 44555667887763 22 46777752 2334455554 11
Q ss_pred --ceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435 302 --YRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 302 --~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~~~v 338 (378)
....-+-.. +|. |+... ....+...|++++++...
T Consensus 148 ~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 148 PLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp ECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEE
T ss_pred ccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEE
Confidence 111112222 566 66665 355699999999996544
No 165
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=80.37 E-value=31 Score=32.87 Aligned_cols=109 Identities=6% Similarity=-0.070 Sum_probs=66.6
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCC
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGV 287 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~ 287 (378)
-+|.+|.....+. .|..+|..+.+. ..++.... ...++.. +|+..++...++.+.+|-++.
T Consensus 147 p~~~~~vs~~~d~------~V~v~D~~t~~~~~~i~~g~~--------~~~v~~spdg~~l~v~~~d~~V~v~D~~~--- 209 (543)
T 1nir_A 147 LPNLFSVTLRDAG------QIALVDGDSKKIVKVIDTGYA--------VHISRMSASGRYLLVIGRDARIDMIDLWA--- 209 (543)
T ss_dssp GGGEEEEEEGGGT------EEEEEETTTCCEEEEEECSTT--------EEEEEECTTSCEEEEEETTSEEEEEETTS---
T ss_pred CCCEEEEEEcCCC------eEEEEECCCceEEEEEecCcc--------cceEEECCCCCEEEEECCCCeEEEEECcC---
Confidence 3677777665543 789999987654 33443221 1023333 665555554457889998842
Q ss_pred CcceEEEEEecC-CCceeEEEEEEe----CCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 288 KDSWSKLFTMNE-NGYRVIPLAFSS----RGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 288 ~~~W~~~~~i~~-~~~~~~~~~~~~----~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
.+-..+.++.. .. .+-+++++ +|+.++.... +..+.++|.++.+..+.
T Consensus 210 -~t~~~~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 210 -KEPTKVAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp -SSCEEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred -CCCcEEEEEecCCC--cceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 11233455554 32 55677888 8997777653 56699999998875443
No 166
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=79.99 E-value=25 Score=29.39 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=100.7
Q ss_pred EeeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
.++..+|.|.+.+ ....+.++++.++....+-+.. .....++.+|+..+...+.- .....+.+++.
T Consensus 42 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~------~~~p~~ia~d~~~~~lyv~d-------~~~~~I~~~~~ 108 (267)
T 1npe_A 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD------LGSPEGIALDHLGRTIFWTD-------SQLDRIEVAKM 108 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT------CCCEEEEEEETTTTEEEEEE-------TTTTEEEEEET
T ss_pred EEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC------CCCccEEEEEecCCeEEEEE-------CCCCEEEEEEc
Confidence 3444567777665 4567888888776543332111 11234677777654433321 12346777777
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGEL 257 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~ 257 (378)
....-+.+... .. ....++.+ +|.+||....... ..|..+++.......+... ... ..
T Consensus 109 ~g~~~~~~~~~-------~~--~~P~~i~vd~~~g~lyv~~~~~~~----~~I~~~~~dg~~~~~~~~~-~~~-----~P 169 (267)
T 1npe_A 109 DGTQRRVLFDT-------GL--VNPRGIVTDPVRGNLYWTDWNRDN----PKIETSHMDGTNRRILAQD-NLG-----LP 169 (267)
T ss_dssp TSCSCEEEECS-------SC--SSEEEEEEETTTTEEEEEECCSSS----CEEEEEETTSCCCEEEECT-TCS-----CE
T ss_pred CCCCEEEEEEC-------CC--CCccEEEEeeCCCEEEEEECCCCC----cEEEEEecCCCCcEEEEEC-CCC-----CC
Confidence 54322222111 10 11234444 5889998754211 3788888876544433111 111 11
Q ss_pred ceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCe
Q 044435 258 SGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHR 334 (378)
Q Consensus 258 ~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~ 334 (378)
..++.. +++||++.....++.+..++. . .....++. . ..|.++..+++.+++... ...+..+|+++++
T Consensus 170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g--~----~~~~~~~~-~--~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQ--P----GRRKVLEG-L--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTE--E----EEEEEEEC-C--CSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred cEEEEcCCCCEEEEEECCCCEEEEEecCC--C----ceEEEecC-C--CCceEEEEeCCEEEEEECCCCeEEEEeCCCCC
Confidence 134544 468988887655544433332 1 11111222 1 234455545565776654 4579999999876
Q ss_pred E-EEEe
Q 044435 335 V-ESFL 339 (378)
Q Consensus 335 ~-~~v~ 339 (378)
. +.+.
T Consensus 241 ~~~~i~ 246 (267)
T 1npe_A 241 EMDTFH 246 (267)
T ss_dssp EEEEEC
T ss_pred ceEEEc
Confidence 4 4443
No 167
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=79.33 E-value=22 Score=30.91 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCC-----C--------CCcccceEEEE--CCeEEEEEcCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNE-----G--------GGGELSGVYVL--KGCLSLLCKYSE 275 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~-----~--------~~~~~~~l~~~--~G~L~~~~~~~~ 275 (378)
+|.++|+.... ..|..||..+.++..+..+..... . ....+..++.. +|+|+++....+
T Consensus 29 ~g~~l~v~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~ 102 (322)
T 2fp8_A 29 TNKGFYTSVQD------GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH 102 (322)
T ss_dssp TCSSEEEECTT------SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE
T ss_pred CCCEEEEEcCC------CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC
Confidence 57878876544 379999998877776643321100 0 00011135555 588988865432
Q ss_pred cEEEEEeccCCCCcceEEEEE-ecC-CCceeEEEEEEe-CCCEEEEEeCC------------------CeEEEEECCCCe
Q 044435 276 PWDLWVMKEYGVKDSWSKLFT-MNE-NGYRVIPLAFSS-RGDKVLFQKNS------------------KDHCWYHLDMHR 334 (378)
Q Consensus 276 ~l~iW~l~~~~~~~~W~~~~~-i~~-~~~~~~~~~~~~-~g~~v~~~~~~------------------~~~~~ydl~~~~ 334 (378)
|+.++..+ .....+.. ... ......-+.+.+ +|. +++.... ..++.||+++++
T Consensus 103 ---i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 103 ---LSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ---EEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ---EEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 44454321 12222211 111 222244467777 787 6665432 459999999988
Q ss_pred EEEE
Q 044435 335 VESF 338 (378)
Q Consensus 335 ~~~v 338 (378)
.+.+
T Consensus 177 ~~~~ 180 (322)
T 2fp8_A 177 TTLL 180 (322)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 168
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=79.32 E-value=34 Score=30.37 Aligned_cols=190 Identities=10% Similarity=-0.019 Sum_probs=91.0
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
.+.|++.. ...+...++.......+.+.. ....++.+|+..+...++- .....+..++..+..-+
T Consensus 44 ~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~-------~~~~~l~~d~~~~~ly~~D-------~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 44 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNL-------ENAIALDFHHRRELVFWSD-------VTLDRILRANLNGSNVE 108 (349)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCEEEEECSC-------SCEEEEEEETTTTEEEEEE-------TTTTEEEEEETTSCSCE
T ss_pred CceeEeec-ccceEEEeCCCCeeEEeecCC-------CceEEEEEeccccEEEEEe-------ccCCceEEEecCCCCce
Confidence 34444442 344666777665554432211 1245788887665433321 11235666776655433
Q ss_pred ecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE
Q 044435 187 RIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL 263 (378)
Q Consensus 187 ~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~ 263 (378)
.+... .. ....++.+ +|.|||..... ..|.++|+.......+. ..... .+..+++.
T Consensus 109 ~~~~~-------~~--~~p~glavd~~~g~ly~~d~~~------~~I~~~~~dG~~~~~l~-~~~l~-----~P~~iavd 167 (349)
T 3v64_C 109 EVVST-------GL--ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSLE-----KPRAIALH 167 (349)
T ss_dssp EEECS-------SC--SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEE-CTTCS-----CEEEEEEE
T ss_pred EEEeC-------CC--CCccEEEEecCCCeEEEEcCCC------CeEEEEcCCCCceEEEE-eCCCC-----CcceEEEe
Confidence 33111 11 11224444 68999987654 37999998865443332 11111 11145554
Q ss_pred --CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 264 --KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 264 --~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
+|.||+..... .-.|+..+-.+... ..+-. ......-+++.++++.+++... ..++..+|+.+...+.+
T Consensus 168 p~~g~ly~td~~~-~~~I~r~~~dG~~~-----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 168 PMEGTIYWTDWGN-TPRIEASSMDGSGR-----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp TTTTEEEEEECSS-SCEEEEEETTSCSC-----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cCcCeEEEeccCC-CCEEEEEeCCCCCc-----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 67888887554 12344444322111 01111 1212333444444444555443 33466777665444433
No 169
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=79.24 E-value=30 Score=29.83 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=95.9
Q ss_pred eeeccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 103 IGSCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 103 ~~s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
.-+.+|-.++. ..+..+.|||..+++...--... ......+.+++.. .+ ++... ....+.+++..
T Consensus 72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~s~s------~D~~i~vwd~~ 137 (319)
T 3frx_A 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGH------KSDVMSVDIDKKA-SM-IISGS------RDKTIKVWTIK 137 (319)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEECTTS-CE-EEEEE------TTSCEEEEETT
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC------CCcEEEEEEcCCC-CE-EEEEe------CCCeEEEEECC
Confidence 33445655444 46677899999998754321111 1223355555532 22 22222 12356777765
Q ss_pred CCcEEecCcccCCCc-cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435 182 VNLWRRIKNIKNFPY-SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 182 ~~~W~~~~~~~~~p~-~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l 260 (378)
...-...... .. .............-++.....+..+ ..|..+|+.+.+.... +..+.. .+..+
T Consensus 138 ~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~-~~~h~~-----~v~~~ 202 (319)
T 3frx_A 138 GQCLATLLGH---NDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEAD-FIGHNS-----NINTL 202 (319)
T ss_dssp SCEEEEECCC---SSCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEE-ECCCCS-----CEEEE
T ss_pred CCeEEEEecc---CCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhhee-ecCCCC-----cEEEE
Confidence 4432222111 00 0000000000111133334444433 2688999887654322 111111 11133
Q ss_pred EEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 261 YVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 261 ~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
... +|++.+....++.+.||.+... ..+..+.. .. ..-+++.++|..+.... +..+..|+++++..
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~--v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLAAK------KAMYTLSAQDE--VFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYL 270 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTT------EEEEEEECCSC--EEEEEECSSSSEEEEEE-TTEEEEEEETTEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCc--EEEEEEcCCCCEEEEEc-CCCcEEEEeCcCee
Confidence 443 6787777777789999988752 23334443 22 55678888888555554 44588888876553
No 170
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=79.23 E-value=16 Score=31.69 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
|.+.++...++.+.||.++..+ ......+........-+.+.++|..++....++.+..||+++++...+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSG----QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI 123 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTS----CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCC----ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee
Confidence 5777777777799999998622 222233332111255677788898788787788899999999987765
No 171
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=79.16 E-value=29 Score=29.61 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=55.7
Q ss_pred EEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-C--
Q 044435 229 LILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-G-- 301 (378)
Q Consensus 229 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~-- 301 (378)
.|..+|+.+.+.. .+.++...... . .+... +| .|++.......+.+|-+... ..+..+.. . .
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~--~---~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTP--M---VPMVAPGGRIAYATVNKSESLVKIDLVTG------ETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC--C---CEEECTTSSEEEEEETTTTEEEEEETTTC------CEEEEEECCBTTEE
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCc--c---ceEEcCCCCEEEEEeCCCCeEEEEECCCC------CeEeeEEcCCcccc
Confidence 7899999876554 34555411000 0 33443 56 45666555557777766541 12222332 1 0
Q ss_pred -ceeEEEEEEeCCCEEEEEe------------CCCeEEEEECCCCeEEEE
Q 044435 302 -YRVIPLAFSSRGDKVLFQK------------NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 302 -~~~~~~~~~~~g~~v~~~~------------~~~~~~~ydl~~~~~~~v 338 (378)
.....+.+.++|+.+++.. .+..+..||+++++....
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 130 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence 0123466777888777764 346799999999876543
No 172
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=78.90 E-value=30 Score=29.67 Aligned_cols=182 Identities=8% Similarity=-0.034 Sum_probs=91.2
Q ss_pred EEEeecCCcEEEEcCcccc----eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc-CCCc
Q 044435 110 LALKNYPKGIILLNPLTKK----HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL-KVNL 184 (378)
Q Consensus 110 l~l~~~~~~~~V~NP~t~~----~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss-~~~~ 184 (378)
|+....+..+.|||..+++ ...+... ......+.+.+. +.+.++.... ...+.+|+. .++.
T Consensus 26 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~~l~~~~~------dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRY-------KHPLLCCNFIDN-TDLQIYVGTV------QGEILKVDLIGSPS 91 (342)
T ss_dssp EEEEETTSEEEEEEEETTTTEEEEEEEEEC-------SSCEEEEEEEES-SSEEEEEEET------TSCEEEECSSSSSS
T ss_pred EEEEcCCCeEEEEEeCCCCccccceeeeec-------CCceEEEEECCC-CCcEEEEEcC------CCeEEEEEeccCCc
Confidence 3333455667888877766 3322211 112335566654 3423333321 246888888 7765
Q ss_pred EEecCc--ccCCCccccccccCCcceeeC-CeEEEEeecCCCcccceEEEEEEcCC---------ceeeeecCCCCCCCC
Q 044435 185 WRRIKN--IKNFPYSWADHSYGGNGAFVN-GALHWLANQNQDEMINDLILAFDLNI---------ETFYSMPMPGFGNEG 252 (378)
Q Consensus 185 W~~~~~--~~~~p~~~~~~~~~~~~v~~~-G~lyw~~~~~~~~~~~~~i~~fD~~~---------~~~~~i~lP~~~~~~ 252 (378)
-..+.. . .. .. .++.+. |.....+..+. .|..+|+.+ .+... .+..
T Consensus 92 ~~~~~~~~~---~~--~v-----~~l~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~-~~~~----- 149 (342)
T 1yfq_A 92 FQALTNNEA---NL--GI-----CRICKYGDDKLIAASWDG------LIEVIDPRNYGDGVIAVKNLNSN-NTKV----- 149 (342)
T ss_dssp EEECBSCCC---CS--CE-----EEEEEETTTEEEEEETTS------EEEEECHHHHTTBCEEEEESCSS-SSSS-----
T ss_pred eEeccccCC---CC--ce-----EEEEeCCCCEEEEEcCCC------eEEEEcccccccccccccCCeee-EEee-----
Confidence 544433 1 11 11 122221 44444444432 788888775 22111 1111
Q ss_pred CCcccceEEEECCeEEEEEcCCCcEEEEEecc-CCCCcceEEEEEecCCCceeEEEEEEe-CCCEEEEEeCCCeEEEEEC
Q 044435 253 GGGELSGVYVLKGCLSLLCKYSEPWDLWVMKE-YGVKDSWSKLFTMNENGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 253 ~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~-~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl 330 (378)
...+..+....+. .++...++.+.+|.+.. ... ... ....... .....+.+.+ +|..++....++.+..||.
T Consensus 150 -~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~--~~~-~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 150 -KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD--NGT-IEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp -CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC--CCE-EEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred -CCceEEEEecCCc-EEEEeCCCeEEEEECCccccc--cce-eeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 0112133444444 44445556999999876 221 111 1111111 1255677787 8887877877777888777
Q ss_pred CCC
Q 044435 331 DMH 333 (378)
Q Consensus 331 ~~~ 333 (378)
+.+
T Consensus 224 ~~~ 226 (342)
T 1yfq_A 224 DDQ 226 (342)
T ss_dssp CTT
T ss_pred cCC
Confidence 665
No 173
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=78.75 E-value=32 Score=33.01 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=60.7
Q ss_pred CcceeeCCeEEEEee-cCCCcccceEEEEEEc-CCc--eeeeecCCCCCCC-----CCCcccceEEEECCeEEEEEcCCC
Q 044435 205 GNGAFVNGALHWLAN-QNQDEMINDLILAFDL-NIE--TFYSMPMPGFGNE-----GGGGELSGVYVLKGCLSLLCKYSE 275 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~-~~~~~~~~~~i~~fD~-~~~--~~~~i~lP~~~~~-----~~~~~~~~l~~~~G~L~~~~~~~~ 275 (378)
..++..+|.+|.... .+ .|.++|. .++ .|+. .++..... ...... .++..+|+|++.... .
T Consensus 56 ~~P~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~d-g 125 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPN-------NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDR-GLAYGAGQIVKKQAN-G 125 (571)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCC-CCEEETTEEEEECTT-S
T ss_pred cccEEECCEEEEEeCCCC-------EEEEEeCCCCccEEEEE-cCCCCcccccccccccccc-ccEEECCEEEEEeCC-C
Confidence 457889999999876 33 6999998 654 4543 23221000 000011 235567777665432 2
Q ss_pred cEEEEEeccCCCCcceEEEEEecC-C-CceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCeEEEE
Q 044435 276 PWDLWVMKEYGVKDSWSKLFTMNE-N-GYRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 276 ~l~iW~l~~~~~~~~W~~~~~i~~-~-~~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v 338 (378)
. +..++-...+..|.....-.. . .....|+.. + +.|++... +..+++||.+|++..+-
T Consensus 126 ~--l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 126 H--LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp E--EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred E--EEEEECCCCCEEEEecCCCCCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 2 333442222345654321100 0 111223322 3 44666654 45799999999886653
No 174
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=78.59 E-value=33 Score=29.86 Aligned_cols=182 Identities=8% Similarity=-0.015 Sum_probs=88.2
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC----CcEEecCcc
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV----NLWRRIKNI 191 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~----~~W~~~~~~ 191 (378)
...+.+.++.+++...+-+. .....++.+|+..+...++-. ....+..++..+ ..-+.+-
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~-------~~~p~g~~~d~~~~~ly~~D~-------~~~~I~~~~~~g~~~~~~~~~~~-- 72 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPN-------LRNVVALDTEVASNRIYWSDL-------SQRMICSTQLDRAHGVSSYDTVI-- 72 (316)
T ss_dssp BSSEEEEETTSCCCEEEECS-------CSSEEEEEEETTTTEEEEEET-------TTTEEEEEEC--------CEEEE--
T ss_pred CCeEEEEECCCcceEehhcC-------CCceEEEEEEeCCCEEEEEEC-------CCCcEEEEECCCCCCCcccEEEE--
Confidence 34577777777665544221 113457888876554322211 134566666654 1112111
Q ss_pred cCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCe
Q 044435 192 KNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGC 266 (378)
Q Consensus 192 ~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~ 266 (378)
+. .. ....++.+ +|.+||..... ..|.++|+.......+- ..... .+..++.. +|.
T Consensus 73 ---~~--~~--~~p~glavd~~~~~ly~~d~~~------~~I~~~~~~g~~~~~~~-~~~~~-----~P~~iavdp~~g~ 133 (316)
T 1ijq_A 73 ---SR--DI--QAPDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLF-RENGS-----KPRAIVVDPVHGF 133 (316)
T ss_dssp ---CS--SC--SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEE-ECTTC-----CEEEEEEETTTTE
T ss_pred ---eC--CC--CCcCEEEEeecCCeEEEEECCC------CEEEEEeCCCCceEEEE-ECCCC-----CcceEEeCCCCCE
Confidence 10 11 11234443 68999987554 37999998865444331 11111 11145554 678
Q ss_pred EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
|++..... .-.|+..+-.+.. .+ .+-. ......-+++..+++.+++... ..++..+|+++...+.+
T Consensus 134 ly~~d~~~-~~~I~~~~~dG~~---~~--~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 134 MYWTDWGT-PAKIKKGGLNGVD---IY--SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEECSS-SCEEEEEETTSCC---EE--EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEEccCC-CCeEEEEcCCCCC---eE--EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 88877543 1244554433221 11 1111 2222334555545555666554 33588888876655555
No 175
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=78.10 E-value=34 Score=29.77 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=60.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.+||...... .|..+|..+++...+.+|.... .++. .+|++.+... .. |+.++... .
T Consensus 60 ~~~l~~~d~~~~------~i~~~d~~~~~~~~~~~~~~v~--------~i~~~~dg~l~v~~~--~g--l~~~d~~~--g 119 (326)
T 2ghs_A 60 SGTAWWFNILER------ELHELHLASGRKTVHALPFMGS--------ALAKISDSKQLIASD--DG--LFLRDTAT--G 119 (326)
T ss_dssp TTEEEEEEGGGT------EEEEEETTTTEEEEEECSSCEE--------EEEEEETTEEEEEET--TE--EEEEETTT--C
T ss_pred CCEEEEEECCCC------EEEEEECCCCcEEEEECCCcce--------EEEEeCCCeEEEEEC--CC--EEEEECCC--C
Confidence 378999876543 7999999988877666653211 3333 4788877652 23 44454321 2
Q ss_pred ceEEEEEecC--CCceeEEEEEEeCCCEEEEEeC-------CCeEEEEECCCCeEEEE
Q 044435 290 SWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKN-------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 290 ~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~-------~~~~~~ydl~~~~~~~v 338 (378)
....+..... ......-+.+.++|. +++... ...++.|| +++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 3433322221 122344566667887 555432 23588888 5666655
No 176
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=77.93 E-value=53 Score=31.93 Aligned_cols=192 Identities=10% Similarity=0.049 Sum_probs=101.5
Q ss_pred CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-cEEecCcccCCC
Q 044435 117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-LWRRIKNIKNFP 195 (378)
Q Consensus 117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-~W~~~~~~~~~p 195 (378)
..++++|..+++...+...... ......+.+.|.+. +-++. .. +.......+.+++..++ ..+.+... .
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~-~l~~~-~~-~~~~~~~~v~~~d~~~g~~~~~~~~~---~ 304 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPK----EKFLTNLSWSPDEN-ILYVA-EV-NRAQNECKVNAYDAETGRFVRTLFVE---T 304 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCT----TCEEEEEEECTTSS-EEEEE-EE-CTTSCEEEEEEEETTTCCEEEEEEEE---E
T ss_pred eEEEEEECCCCceEeeccCCCC----ceeEeeEEEECCCC-EEEEE-Ee-CCCCCeeEEEEEECCCCceeeEEEEc---c
Confidence 4688999999887666532211 12233556655433 22222 21 32334567888898887 77665322 0
Q ss_pred ccccccccCCccee--e--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce-EEEE-CC-eEE
Q 044435 196 YSWADHSYGGNGAF--V--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG-VYVL-KG-CLS 268 (378)
Q Consensus 196 ~~~~~~~~~~~~v~--~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~-l~~~-~G-~L~ 268 (378)
. ........++. - +|.+.+.+..+. ...|..+|...+....+... . ..... ++.. +| .|+
T Consensus 305 ~--~~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~--~-----~~v~~~~~~spdg~~l~ 371 (706)
T 2z3z_A 305 D--KHYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG--E-----WEVTNFAGFDPKGTRLY 371 (706)
T ss_dssp C--SSCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS--S-----SCEEEEEEECTTSSEEE
T ss_pred C--CCeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC--C-----eEEEeeeEEcCCCCEEE
Confidence 0 00000001222 2 788777665432 14688888776666555221 1 11101 2333 45 566
Q ss_pred EEEcCCC--cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEE
Q 044435 269 LLCKYSE--PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESF 338 (378)
Q Consensus 269 ~~~~~~~--~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v 338 (378)
+....+. ...||.++-.+. .. ..+.. .. ...+.+.++|..+++...+ ..++.+|+++++.+.+
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~--~~---~~l~~~~~--~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~ 441 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGG--KT---KDLTPESG--MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLL 441 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCC--CC---EESCCSSS--EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEE
T ss_pred EEecCCCCceEEEEEEEcCCC--Cc---eeccCCCc--eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeec
Confidence 6665544 578888764321 11 12222 22 4457778899876665432 3499999999884433
No 177
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=77.54 E-value=33 Score=29.35 Aligned_cols=98 Identities=8% Similarity=0.013 Sum_probs=56.4
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVI 305 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 305 (378)
.+..+|+....-........... .. .+... .+.+.+....+..+.+|.+.. ......+........
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~----v~-~~~~~~~~~~~~~~s~~~d~~i~i~d~~~------~~~~~~~~~h~~~v~ 219 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEW----VS-CVRFSPNSSNPIIVSCGWDKLVKVWNLAN------CKLKTNHIGHTGYLN 219 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSC----EE-EEEECSCSSSCEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEE
T ss_pred eEEEEEeCCCceEEEEeccccCc----cc-ceEEccCCCCcEEEEEcCCCEEEEEECCC------CceeeEecCCCCcEE
Confidence 57778877655444433322211 11 12221 234555555566899997764 223333433111255
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 306 PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 306 ~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
-+++.++|..++....++.+..||+++.+...
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceee
Confidence 67778889977777778889999999877543
No 178
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=77.54 E-value=34 Score=29.50 Aligned_cols=189 Identities=8% Similarity=-0.066 Sum_probs=93.1
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE-EecCcc-cC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW-RRIKNI-KN 193 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W-~~~~~~-~~ 193 (378)
...+.++|+.|++....-+... . ..++.+++..+ +-++. . . ....+.+++..++.- ..+... ..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-----~--~~~~~~s~dg~-~l~v~--~-~---~~~~v~~~d~~~~~~~~~~~~~~~~ 133 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-----K--PFGATINNTTQ-TLWFG--N-T---VNSAVTAIDAKTGEVKGRLVLDDRK 133 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----C--CCSEEEETTTT-EEEEE--E-T---TTTEEEEEETTTCCEEEEEESCCCC
T ss_pred CccEEEEcCCCCeEEEEEecCC-----C--cceEEECCCCC-EEEEE--e-c---CCCEEEEEeCCCCeeEEEEecCCCc
Confidence 4468999999987554322211 1 11455555443 22222 1 1 124788899887643 222111 00
Q ss_pred CCccccccccCCcceee--CCe-EEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-CCeEE
Q 044435 194 FPYSWADHSYGGNGAFV--NGA-LHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL-KGCLS 268 (378)
Q Consensus 194 ~p~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~-~G~L~ 268 (378)
-|. ........++.+ +|. +|....... ..|..+|+.+.+... ++...... . .+... +|+..
T Consensus 134 ~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~----~---~~~~s~dg~~l 199 (353)
T 3vgz_A 134 RTE--EVRPLQPRELVADDATNTVYISGIGKE-----SVIWVVDGGNIKLKTAIQNTGKMS----T---GLALDSEGKRL 199 (353)
T ss_dssp CCS--SCCCCEEEEEEEETTTTEEEEEEESSS-----CEEEEEETTTTEEEEEECCCCTTC----C---CCEEETTTTEE
T ss_pred ccc--ccCCCCCceEEECCCCCEEEEEecCCC-----ceEEEEcCCCCceEEEecCCCCcc----c---eEEECCCCCEE
Confidence 000 000000122333 555 554442222 379999998776543 34222111 1 22333 55543
Q ss_pred EEEcCCCcEEEEEeccCCCCcceEEEEEecC----CCceeEEEEEEeCCCEEEEEeCC-CeEEEEECCCCeEEEE
Q 044435 269 LLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE----NGYRVIPLAFSSRGDKVLFQKNS-KDHCWYHLDMHRVESF 338 (378)
Q Consensus 269 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~----~~~~~~~~~~~~~g~~v~~~~~~-~~~~~ydl~~~~~~~v 338 (378)
++...++.+.+|-+.. ......+.. ......-+++.++|+.+++.... ..+..||+++++....
T Consensus 200 ~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 200 YTTNADGELITIDTAD------NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp EEECTTSEEEEEETTT------TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred EEEcCCCeEEEEECCC------CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 4443445666665543 222333332 12224457788889877776644 5799999998876443
No 179
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=76.95 E-value=36 Score=29.38 Aligned_cols=107 Identities=7% Similarity=0.057 Sum_probs=61.7
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-------ECCeEEEEEcCCCcEEEEEec
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-------LKGCLSLLCKYSEPWDLWVMK 283 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-------~~G~L~~~~~~~~~l~iW~l~ 283 (378)
+|.+...+..+. .|..+|+..+....+.-... ... .+.. .++.+.+....++.+.+|-+.
T Consensus 118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~h~~------~v~-~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 118 KASMIISGSRDK------TIKVWTIKGQCLATLLGHND------WVS-QVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp TSCEEEEEETTS------CEEEEETTSCEEEEECCCSS------CEE-EEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEeccCC------cEE-EEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 455544444442 68888987665544421110 000 1111 134455555566699999886
Q ss_pred cCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 284 EYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 284 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.. .....+.........+.+.++|..++....++.+..||+++++..
T Consensus 185 ~~------~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 185 QF------QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp TT------EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred cc------hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 52 223333331112556778889997777777888999999988743
No 180
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=76.38 E-value=41 Score=29.79 Aligned_cols=210 Identities=12% Similarity=-0.029 Sum_probs=104.8
Q ss_pred eeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 103 IGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 103 ~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
.+..+|.|...+ ....+..+++.++....+..... ....++++|+..+...+.- .....+++++..
T Consensus 80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~------~~p~glavd~~~g~ly~~d-------~~~~~I~~~~~d 146 (349)
T 3v64_C 80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL------ESPGGLAVDWVHDKLYWTD-------SGTSRIEVANLD 146 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC------SCCCEEEEETTTTEEEEEE-------TTTTEEEEEETT
T ss_pred EeccccEEEEEeccCCceEEEecCCCCceEEEeCCC------CCccEEEEecCCCeEEEEc-------CCCCeEEEEcCC
Confidence 344677777776 45667788887766444422211 1123677787655433321 113467777776
Q ss_pred CCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435 182 VNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS 258 (378)
Q Consensus 182 ~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~ 258 (378)
...-+.+... . .....++.+ +|.|||...... ..|..+|+....-..+- ..... ...
T Consensus 147 G~~~~~l~~~-------~--l~~P~~iavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~~-~~~~~-----~Pn 206 (349)
T 3v64_C 147 GAHRKVLLWQ-------S--LEKPRAIALHPMEGTIYWTDWGNT-----PRIEASSMDGSGRRIIA-DTHLF-----WPN 206 (349)
T ss_dssp SCSCEEEECT-------T--CSCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEESC-CSSCS-----CEE
T ss_pred CCceEEEEeC-------C--CCCcceEEEecCcCeEEEeccCCC-----CEEEEEeCCCCCcEEEE-ECCCC-----Ccc
Confidence 5432222111 0 011234444 589999875441 37999998865444331 11111 111
Q ss_pred eEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECC-CCe
Q 044435 259 GVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLD-MHR 334 (378)
Q Consensus 259 ~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~-~~~ 334 (378)
.|+.. +|+||++.....++....++ +... . ..+.... ..|.++.-+++.+++... ..++..+|.. ...
T Consensus 207 Gla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~--~--~~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAKHHVIERANLD--GSHR--K--AVISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--SCSC--E--EEECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCC--CCce--E--EEEeCCC--CCceEEEEECCEEEEecCCCCeEEEEEccCCCc
Confidence 45554 78999998765554443333 2211 0 1111122 234343323444666654 4468899854 444
Q ss_pred EEEEeEeC--CcceEEeeecc
Q 044435 335 VESFLVKG--PSDVHVCVDTL 353 (378)
Q Consensus 335 ~~~v~~~~--~~~~~~y~~sl 353 (378)
.+.|.... +..+.+|.++.
T Consensus 279 ~~~i~~~~~~p~gi~v~~~~~ 299 (349)
T 3v64_C 279 QEIIRNKLHFPMDIHTLHPQR 299 (349)
T ss_dssp CEEEECSCSCCCCEEEECGGG
T ss_pred cEEeccCCCCCceEEEEcccc
Confidence 55553221 22555665543
No 181
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=76.34 E-value=34 Score=30.89 Aligned_cols=110 Identities=8% Similarity=0.038 Sum_probs=63.3
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
|.+...+..+. .|..+|+.+.+.. .+..|.+.. .+..+... +|.+.+....++.+.+|-+..
T Consensus 182 ~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----- 245 (437)
T 3gre_A 182 KSLLVALTNLS------RVIIFDIRTLERLQIIENSPRHG-----AVSSICIDEECCVLILGTTRGIIDIWDIRF----- 245 (437)
T ss_dssp CEEEEEEETTS------EEEEEETTTCCEEEEEECCGGGC-----CEEEEEECTTSCEEEEEETTSCEEEEETTT-----
T ss_pred CCEEEEEeCCC------eEEEEeCCCCeeeEEEccCCCCC-----ceEEEEECCCCCEEEEEcCCCeEEEEEcCC-----
Confidence 66666655543 7999999876543 334432221 11033333 677777777778999998875
Q ss_pred ceEEEEEecC-CCceeEEEEEE----eCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 290 SWSKLFTMNE-NGYRVIPLAFS----SRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 290 ~W~~~~~i~~-~~~~~~~~~~~----~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
...+..+.. ......-+.+. ++|..++....++.+..||+++++....
T Consensus 246 -~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 246 -NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp -TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred -ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 223333332 22113333332 3555555555566799999998875544
No 182
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=76.02 E-value=34 Score=28.67 Aligned_cols=194 Identities=11% Similarity=0.064 Sum_probs=100.4
Q ss_pred EeeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+....+|-+.+.. ....+.++||. ++...++.+.. .....++..|+.. ...+. . .....+.+|+.
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v~---~----~~~~~v~~~d~ 90 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP-----DAKVMCLIVSSLG-DIWFT---E----NGANKIGKLSK 90 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-----TCCEEEEEECTTS-CEEEE---E----TTTTEEEEECT
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC-----CCcceeEEECCCC-CEEEE---e----cCCCeEEEECC
Confidence 3344567666665 45678899998 77665442211 1234456666433 22221 1 11235777777
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS 258 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~ 258 (378)
. +.++..... .. . ....++.+ +|.+|+..... ..|..||.. ++...+.+|.... ...
T Consensus 91 ~-g~~~~~~~~---~~--~---~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~-----~~~ 149 (300)
T 2qc5_A 91 K-GGFTEYPLP---QP--D---SGPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYDLPNKGS-----YPA 149 (300)
T ss_dssp T-SCEEEEECS---ST--T---CCEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEECSSTTC-----CEE
T ss_pred C-CCeEEecCC---CC--C---CCCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEccCCCCCC-----Cce
Confidence 6 666543221 00 0 11123333 57777654433 279999998 6666665653222 111
Q ss_pred eEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEE
Q 044435 259 GVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVE 336 (378)
Q Consensus 259 ~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~ 336 (378)
.++. .+|+|++....... |+.++.. ..... ..++.......-+.+.++|. +++... ...+..||+ ++++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~--i~~~~~~---g~~~~-~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNS--IGRITNT---GKLEE-YPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp EEEECTTSSEEEEETTTTE--EEEECTT---CCEEE-EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE
T ss_pred eEEECCCCCEEEEecCCCe--EEEECCC---CcEEE-eeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEE
Confidence 3444 36888887754444 3444432 22332 22222222244455566777 666554 446999999 56665
Q ss_pred EE
Q 044435 337 SF 338 (378)
Q Consensus 337 ~v 338 (378)
.+
T Consensus 222 ~~ 223 (300)
T 2qc5_A 222 EY 223 (300)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 183
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=75.92 E-value=30 Score=30.21 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=46.7
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcce-EEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSW-SKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
+|.+.+....++.+.||.+......... .....+........-+++.+++..++-...++.+..+|+++++..
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~ 111 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY 111 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 5677777777779999998753321111 122333332122556777788887777777788999999887643
No 184
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=75.25 E-value=35 Score=30.97 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=57.7
Q ss_pred EEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeE
Q 044435 229 LILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVI 305 (378)
Q Consensus 229 ~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 305 (378)
.|..+|+.+++... +.+..+... +..|... +|.+.+....++.+.||-++. ..-.....-........
T Consensus 143 ~i~lWd~~~~~~~~~~~~~gH~~~-----V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~~~~~~~~~ 213 (435)
T 4e54_B 143 DIMLWNFGIKDKPTFIKGIGAGGS-----ITGLKFNPLNTNQFYASSMEGTTRLQDFKG----NILRVFASSDTINIWFC 213 (435)
T ss_dssp CEEEECSSCCSCCEEECCCSSSCC-----CCEEEECSSCTTEEEEECSSSCEEEEETTS----CEEEEEECCSSCSCCCC
T ss_pred EEEEEECCCCCceeEEEccCCCCC-----EEEEEEeCCCCCEEEEEeCCCEEEEeeccC----CceeEEeccCCCCccEE
Confidence 58888887655433 333322221 1134443 577777777777999997753 11111111111111233
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 306 PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 306 ~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.+.+.++|..++....++.+..+|++++.+..+
T Consensus 214 ~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~ 246 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNL 246 (435)
T ss_dssp CEEEETTTTEEEEECSSSBEEEEESSSCBCCCS
T ss_pred EEEECCCCCEEEEEeCCCcEeeeccCcceeEEE
Confidence 466778888777777777899999987765443
No 185
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=75.14 E-value=17 Score=31.36 Aligned_cols=109 Identities=12% Similarity=-0.015 Sum_probs=59.2
Q ss_pred CCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 211 NGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 211 ~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
+|. +||...... .|..+|.. ++.+.+..|... -. .++.. +|+|++.......+.+|..+ +
T Consensus 55 ~g~~l~~~d~~~~------~i~~~~~~-g~~~~~~~~~~~------~~-gl~~d~dG~l~v~~~~~~~v~~~~~~--g-- 116 (305)
T 3dr2_A 55 AQRTLVWSDLVGR------RVLGWRED-GTVDVLLDATAF------TN-GNAVDAQQRLVHCEHGRRAITRSDAD--G-- 116 (305)
T ss_dssp GGTEEEEEETTTT------EEEEEETT-SCEEEEEESCSC------EE-EEEECTTSCEEEEETTTTEEEEECTT--S--
T ss_pred CCCEEEEEECCCC------EEEEEeCC-CCEEEEeCCCCc------cc-eeeECCCCCEEEEECCCCEEEEECCC--C--
Confidence 444 899876543 78899984 445555433321 11 33443 68888776544455444332 2
Q ss_pred cceEEEE-EecC-CCceeEEEEEEeCCCEEEEEe------------------CCCeEEEEECCCCeEEEEe
Q 044435 289 DSWSKLF-TMNE-NGYRVIPLAFSSRGDKVLFQK------------------NSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 289 ~~W~~~~-~i~~-~~~~~~~~~~~~~g~~v~~~~------------------~~~~~~~ydl~~~~~~~v~ 339 (378)
+..... .... ......-+.+.++|. +++.. ....++.||+++++++.+.
T Consensus 117 -~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 117 -QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp -CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred -CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 232221 1111 111133466777888 66631 1235999999888877663
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=75.07 E-value=60 Score=31.11 Aligned_cols=195 Identities=9% Similarity=-0.033 Sum_probs=99.6
Q ss_pred cceEEEee-cCCcEEEEcCccccee-ecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC--C
Q 044435 107 NGLLALKN-YPKGIILLNPLTKKHR-VLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK--V 182 (378)
Q Consensus 107 ~GLl~l~~-~~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~--~ 182 (378)
++++.+.. ....+.|+|+.|++.. .++... ...++.+++.. .|-++. . ....+.+|+.. +
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--------~p~~v~~SpDG-r~lyv~--~-----~dg~V~viD~~~~t 229 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--------AVHISRLSASG-RYLFVI--G-----RDGKVNMIDLWMKE 229 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS--------CEEEEEECTTS-CEEEEE--E-----TTSEEEEEETTSSS
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--------CccceEECCCC-CEEEEE--c-----CCCeEEEEECCCCC
Confidence 34554443 5667899999998765 344221 12255666543 333332 2 12368889885 3
Q ss_pred CcEEecCcccCCCccccccccCCcceee------CCe-EEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCC-
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAFV------NGA-LHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGG- 253 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~------~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~- 253 (378)
. +.+... +. +. ...++.+ +|+ +|...... ..+.++|..+.+-. .+++........
T Consensus 230 ~--~~v~~i---~~--G~---~P~~ia~s~~~~pDGk~l~v~n~~~------~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 230 P--TTVAEI---KI--GS---EARSIETSKMEGWEDKYAIAGAYWP------PQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp C--CEEEEE---EC--CS---EEEEEEECCSTTCTTTEEEEEEEET------TEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred C--cEeEEE---ec--CC---CCceeEEccccCCCCCEEEEEEccC------CeEEEEECCCCcEEEEEecccccccccc
Confidence 3 222222 22 11 1112332 575 44444443 37889998775443 345432110000
Q ss_pred ---CcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEE
Q 044435 254 ---GGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCW 327 (378)
Q Consensus 254 ---~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ 327 (378)
......+..+ ++..+++...+. -.||..+-.. ....++..|+. .. .+.+++.++|..++.... ..++.+
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~-g~v~~vd~~~--~~~~~v~~i~~~~~--~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKET-GKILLVDYTD--LNNLKTTEISAERF--LHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTT-TEEEEEETTC--SSEEEEEEEECCSS--EEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCC-CeEEEEecCC--Cccceeeeeecccc--ccCceECCCCCEEEEEeCCCCeEEE
Confidence 0011022332 334444444322 2345454321 23455556655 44 566788889997766653 457999
Q ss_pred EECCCCeEEEE
Q 044435 328 YHLDMHRVESF 338 (378)
Q Consensus 328 ydl~~~~~~~v 338 (378)
+|++++++...
T Consensus 369 iD~~t~kl~~~ 379 (567)
T 1qks_A 369 IDTKEGKLVAI 379 (567)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCcEEEE
Confidence 99999987654
No 187
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=74.93 E-value=41 Score=29.13 Aligned_cols=70 Identities=7% Similarity=-0.003 Sum_probs=41.4
Q ss_pred eEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEe--CCCEEEEEeCCCeEEEEECCC
Q 044435 259 GVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSS--RGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 259 ~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~--~g~~v~~~~~~~~~~~ydl~~ 332 (378)
.+....+.+.+....++.+.||.... ..|........ .......+.+.+ +|..++-...++.+..+|+++
T Consensus 255 ~v~~s~~~~l~s~~~dg~v~iw~~~~----~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 255 NVAWGFNGLIASVGADGVLAVYEEVD----GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEECTTSCEEEEETTSCEEEEEEET----TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEcCCCEEEEEeCCCEEEEEEcCC----CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 34444555555566667999999864 35776655433 221355566666 566566677777899998865
No 188
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=74.61 E-value=35 Score=31.44 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=47.1
Q ss_pred CCeEEEEEcCC-------CcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEe-CCCeEEEEECCCC
Q 044435 264 KGCLSLLCKYS-------EPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQK-NSKDHCWYHLDMH 333 (378)
Q Consensus 264 ~G~L~~~~~~~-------~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~-~~~~~~~ydl~~~ 333 (378)
+++||+..... ..-.||++|- .++..+.+|+. .. ..-+.+.++|+ .++... .++.+.+||+.+.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~~--P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGHE--IDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCCC--cCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 36788876421 1346888875 45777888876 42 33466778898 777766 4677999999999
Q ss_pred eEEE
Q 044435 334 RVES 337 (378)
Q Consensus 334 ~~~~ 337 (378)
+..+
T Consensus 404 kvv~ 407 (426)
T 3c75_H 404 EELR 407 (426)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8653
No 189
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=74.30 E-value=45 Score=29.32 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=43.3
Q ss_pred eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC---C---CceeEEEEEEeCCCEEEEEeCC---CeEEEE
Q 044435 259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE---N---GYRVIPLAFSSRGDKVLFQKNS---KDHCWY 328 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---~---~~~~~~~~~~~~g~~v~~~~~~---~~~~~y 328 (378)
.+... +| +.++...++.+.+|.+... .- +..+.. . .....-+.+.++|..++....+ +.+..|
T Consensus 191 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~----~~--~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 191 SVDISERG-LIATGFNNGTVQISELSTL----RP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EEEECTTS-EEEEECTTSEEEEEETTTT----EE--EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred EEEECCCc-eEEEEeCCCcEEEEECCCC----ce--eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 34444 46 5555555569999988752 12 222221 1 2235567777888877777666 679999
Q ss_pred ECCCCeEE
Q 044435 329 HLDMHRVE 336 (378)
Q Consensus 329 dl~~~~~~ 336 (378)
|+++.+..
T Consensus 264 d~~~~~~~ 271 (397)
T 1sq9_A 264 ETEFGERI 271 (397)
T ss_dssp ETTTCCEE
T ss_pred ECCCCccc
Confidence 99877643
No 190
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=74.06 E-value=49 Score=30.31 Aligned_cols=113 Identities=9% Similarity=0.103 Sum_probs=62.6
Q ss_pred cceeeC----CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCC--c-
Q 044435 206 NGAFVN----GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSE--P- 276 (378)
Q Consensus 206 ~~v~~~----G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~--~- 276 (378)
.++.++ |.||+.... ..|..||+.+++...+.-+ . .....++.. +|+ |+++..... .
T Consensus 140 ~~lavdp~~~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~~--~-----~~P~~ia~d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQ-------HPTRLIDFEKEYVSTVYSG--L-----SKVRTICWTHEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CEEEEETTEEEEEEEEEBT-------EEEEEEETTTTEEEEEECC--C-----SCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred CEEEECCCCCCeEEEEeCC-------CcEEEEECCCCEEEEEecC--C-----CCcceEEEeCCCCEEEEEeCCCCcccc
Confidence 355555 888887654 2799999999887766221 1 111144543 565 888876543 2
Q ss_pred EEEEEeccCCCCcceEEEEEecCCCceeEEEEEEe-CCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435 277 WDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSS-RGDKVLFQK-NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 277 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~~v~~~~-~~~~~~~ydl~~~~~~~v 338 (378)
..+|...+ + .|.....+.. .....-+++.+ +|. +++.. ...+++.||+++.....+
T Consensus 206 ~v~~~~~~-g---~~~~~~~l~~-~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 206 NNYILTRE-S---GFKVITELTK-GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp EEEEEEGG-G---TSCSEEEEEE-CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEEEeCC-C---ceeeeeeecc-CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEE
Confidence 33444433 2 2332222221 11123356666 566 55554 455799999988876443
No 191
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=72.51 E-value=80 Score=31.36 Aligned_cols=200 Identities=11% Similarity=0.016 Sum_probs=99.3
Q ss_pred eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
..+|-|-+......++++||.++++..+....... .....++..|... . +.+.. ....+..|+..++.
T Consensus 371 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~d~~g-~---lWigt-----~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 371 DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELL---SNSVLCSLKDSEG-N---LWFGT-----YLGNISYYNTRLKK 438 (781)
T ss_dssp CTTSCEEEEEBSSCEEEEETTEEEEECC-----CC---CSBEEEEEECTTS-C---EEEEE-----TTEEEEEECSSSCE
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCC---CcceEEEEECCCC-C---EEEEe-----ccCCEEEEcCCCCc
Confidence 34566666655667889999988877653211100 1223344444322 2 12221 12457788888888
Q ss_pred EEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~ 262 (378)
++..... .++. ..-.+++. +|. .|++... .+..||..+++|..+.............. .+.+
T Consensus 439 ~~~~~~~-~~~~------~~v~~i~~d~~g~-lwigt~~-------Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~ 502 (781)
T 3v9f_A 439 FQIIELE-KNEL------LDVRVFYEDKNKK-IWIGTHA-------GVFVIDLASKKVIHHYDTSNSQLLENFVR-SIAQ 502 (781)
T ss_dssp EEECCST-TTCC------CCEEEEEECTTSE-EEEEETT-------EEEEEESSSSSCCEEECTTTSSCSCSCEE-EEEE
T ss_pred EEEeccC-CCCC------CeEEEEEECCCCC-EEEEECC-------ceEEEeCCCCeEEecccCcccccccceeE-EEEE
Confidence 8776421 0011 01113333 354 5666543 69999999988877632221100001111 3333
Q ss_pred -ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-CCCceeEEEEEEeCCCEEEEEeCCCeE-EEEECCCCeEEEEe
Q 044435 263 -LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-ENGYRVIPLAFSSRGDKVLFQKNSKDH-CWYHLDMHRVESFL 339 (378)
Q Consensus 263 -~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~ydl~~~~~~~v~ 339 (378)
.+|.|.+.+...+ +..++.. ...+.....-. +.......+....+|. |.+.... .+ +.||+++++++.+.
T Consensus 503 d~~g~lWigt~~~G---l~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~~-Glv~~~d~~~~~~~~~~ 575 (781)
T 3v9f_A 503 DSEGRFWIGTFGGG---VGIYTPD--MQLVRKFNQYEGFCSNTINQIYRSSKGQ-MWLATGE-GLVCFPSARNFDYQVFQ 575 (781)
T ss_dssp CTTCCEEEEESSSC---EEEECTT--CCEEEEECTTTTCSCSCEEEEEECTTSC-EEEEETT-EEEEESCTTTCCCEEEC
T ss_pred cCCCCEEEEEcCCC---EEEEeCC--CCeEEEccCCCCCCCCeeEEEEECCCCC-EEEEECC-CceEEECCCCCcEEEcc
Confidence 3677777765333 2233331 12333221101 1111123333334566 7777764 47 99999999888763
No 192
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=72.32 E-value=68 Score=32.71 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=59.3
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLA 308 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 308 (378)
.|..||..+.+.... ++... .-. .+....|++.+....++.+.||.++... .+..+.... ....+.
T Consensus 40 ~I~lw~~~~~~~~~~-~~~~~-----~V~-~l~fspg~~L~S~s~D~~v~lWd~~~~~------~~~~~~~~~-~V~~v~ 105 (902)
T 2oaj_A 40 EVHIYGQQQVEVVIK-LEDRS-----AIK-EMRFVKGIYLVVINAKDTVYVLSLYSQK------VLTTVFVPG-KITSID 105 (902)
T ss_dssp EEEEECSTTCEEEEE-CSSCC-----CEE-EEEEETTTEEEEEETTCEEEEEETTTCS------EEEEEECSS-CEEEEE
T ss_pred EEEEEeCCCcEEEEE-cCCCC-----CEE-EEEEcCCCEEEEEECcCeEEEEECCCCc------EEEEEcCCC-CEEEEE
Confidence 677788776554322 22211 111 4555557744445556699999887521 122222311 255677
Q ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 309 FSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 309 ~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+.++|+.++....++.+..||+++++....
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 778999888888888899999999887533
No 193
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=72.28 E-value=71 Score=30.68 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=60.8
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCC-CCcccceEEEECCeEEEEEcCCCcEEEE
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEG-GGGELSGVYVLKGCLSLLCKYSEPWDLW 280 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~-~~~~~~~l~~~~G~L~~~~~~~~~l~iW 280 (378)
..++..+|.+|.....+ .|.++|..++ .|+.- ..|...... ..... .++..+|+|++.... . .|.
T Consensus 62 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~~~~v~~~t~d-g--~l~ 130 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIYGDKVFFGTLD-A--SVV 130 (582)
T ss_dssp CCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEETTEEEEEETT-T--EEE
T ss_pred eccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEECCEEEEEeCC-C--EEE
Confidence 45788999999977543 4999998654 56543 223211100 00011 234456666665432 1 233
Q ss_pred EeccCCCCcceEEEEEecC-C-CceeEEEEEEe--CCC-EEEEEeC------CCeEEEEECCCCeEEEE
Q 044435 281 VMKEYGVKDSWSKLFTMNE-N-GYRVIPLAFSS--RGD-KVLFQKN------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 281 ~l~~~~~~~~W~~~~~i~~-~-~~~~~~~~~~~--~g~-~v~~~~~------~~~~~~ydl~~~~~~~v 338 (378)
.++-...+..|.....-.. . .....|+.... +|. .|++... +..+++||.+|++..+.
T Consensus 131 AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp EEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred EEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 3432212344653211100 0 11123443322 233 4555432 45699999999886664
No 194
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=72.21 E-value=44 Score=28.31 Aligned_cols=117 Identities=7% Similarity=-0.032 Sum_probs=67.1
Q ss_pred CeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CC----eEEEEEcCCCcEEEEEeccC
Q 044435 212 GALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KG----CLSLLCKYSEPWDLWVMKEY 285 (378)
Q Consensus 212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G----~L~~~~~~~~~l~iW~l~~~ 285 (378)
+.+...+..+ ..++.++...+....+ .++.+.. .+..+... +| .+.+....++.+.+|.+...
T Consensus 182 ~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~-----~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 182 PEKLAVSALE------QAIIYQRGKDGKLHVAAKLPGHKS-----LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCEEEEEETT------EEEEEEECTTSCEEEEEECCCCCS-----CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CcEEEEecCC------CcEEEEccCCCceeeeeecCCCCc-----ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 5555555544 2566666666665444 4443322 11133333 44 67777777779999988752
Q ss_pred CC----------------------------------------CcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeE
Q 044435 286 GV----------------------------------------KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDH 325 (378)
Q Consensus 286 ~~----------------------------------------~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~ 325 (378)
.. ...+..+..+........-+.+.++|..++....++.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV 330 (351)
T ss_dssp C---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcE
Confidence 10 01123333333211125567777888877777778889
Q ss_pred EEEECCCC-eEEEEe
Q 044435 326 CWYHLDMH-RVESFL 339 (378)
Q Consensus 326 ~~ydl~~~-~~~~v~ 339 (378)
..||++++ +++.+.
T Consensus 331 ~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 331 RLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEecCcCcchhhee
Confidence 99999875 566664
No 195
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=71.93 E-value=24 Score=34.74 Aligned_cols=120 Identities=14% Similarity=0.036 Sum_probs=59.4
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCC-----CCCcccceEEEECCeEEEEEcCCCcEE
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNE-----GGGGELSGVYVLKGCLSLLCKYSEPWD 278 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~-----~~~~~~~~l~~~~G~L~~~~~~~~~l~ 278 (378)
..++..+|.+|.....+ .|.++|..+++-.+- +.+..... ...... .++..+|+|++.... +.
T Consensus 71 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~v~v~~~d-g~-- 139 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALWKGKVYVGAWD-GR-- 139 (677)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEETTEEEEECTT-SE--
T ss_pred eCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEcCCCCccccccccccCCCC-CceEECCEEEEEcCC-CE--
Confidence 45788999999987643 699999876544332 22211000 000011 334556666665322 22
Q ss_pred EEEeccCCCCcceEEEEEecC-C--CceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCeEEEE
Q 044435 279 LWVMKEYGVKDSWSKLFTMNE-N--GYRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 279 iW~l~~~~~~~~W~~~~~i~~-~--~~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v 338 (378)
|..++-...+..|......+. . .....|+.. ++.|++... ++.+++||.+|++..+-
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 223332112344654321010 0 011223322 344666543 35699999999886544
No 196
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=71.66 E-value=43 Score=27.91 Aligned_cols=160 Identities=10% Similarity=-0.003 Sum_probs=81.4
Q ss_pred eEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCC
Q 044435 147 HGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQD 223 (378)
Q Consensus 147 ~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~ 223 (378)
.++.+|+..+...+.- .....+.+|+..++.-+.+... .. ....++.+ +|.+||.....
T Consensus 39 ~gi~~d~~~~~ly~~d-------~~~~~I~~~~~~g~~~~~~~~~-------~~--~~p~~ia~d~~~~~lyv~d~~~-- 100 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTD-------ISEPSIGRASLHGGEPTTIIRQ-------DL--GSPEGIALDHLGRTIFWTDSQL-- 100 (267)
T ss_dssp EEEEEETTTTEEEEEE-------TTTTEEEEEESSSCCCEEEECT-------TC--CCEEEEEEETTTTEEEEEETTT--
T ss_pred EEEEEecCCCEEEEEE-------CCCCEEEEEecCCCCcEEEEEC-------CC--CCccEEEEEecCCeEEEEECCC--
Confidence 4677777655433322 1234677787765432221111 10 11234444 57899987554
Q ss_pred cccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCC
Q 044435 224 EMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENG 301 (378)
Q Consensus 224 ~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 301 (378)
..|..+|+.......+ .+.... ....++.. +|.|++.......-.|+..+-.+.. .... .....
T Consensus 101 ----~~I~~~~~~g~~~~~~-~~~~~~-----~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~-~~~~~ 166 (267)
T 1npe_A 101 ----DRIEVAKMDGTQRRVL-FDTGLV-----NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRIL-AQDNL 166 (267)
T ss_dssp ----TEEEEEETTSCSCEEE-ECSSCS-----SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEE-ECTTC
T ss_pred ----CEEEEEEcCCCCEEEE-EECCCC-----CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEE-EECCC
Confidence 3799999876543333 121111 11144554 5889988765322234443322211 1111 11122
Q ss_pred ceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 302 YRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 302 ~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
....-+++.++++.+++... ...+..+|+++...+.+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 22445666666766777654 34699999987765554
No 197
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=71.49 E-value=45 Score=32.68 Aligned_cols=120 Identities=14% Similarity=0.062 Sum_probs=59.1
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCC---CCCCcccceEEEECCeEEEEEcCCCcEE
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGN---EGGGGELSGVYVLKGCLSLLCKYSEPWD 278 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~---~~~~~~~~~l~~~~G~L~~~~~~~~~l~ 278 (378)
..++..+|.+|.....+ .|.++|..++ .|+.- ..+.... ....... .++..+|+|++... ++.
T Consensus 60 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~-dg~-- 128 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALWGDKVYVGTL-DGR-- 128 (668)
T ss_dssp CCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEEBTEEEEECT-TSE--
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEECCEEEEEcC-CCE--
Confidence 45788999999987653 7999997664 45532 2221100 0000011 23445666665442 222
Q ss_pred EEEeccCCCCcceEEEEEecC-CC-ceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCeEEEE
Q 044435 279 LWVMKEYGVKDSWSKLFTMNE-NG-YRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 279 iW~l~~~~~~~~W~~~~~i~~-~~-~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v 338 (378)
|..++-...+..|.....-.. .. ....|+.. +| .|++... ++.+++||.+|++..+-
T Consensus 129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 233332212344654321000 00 11223322 34 4666543 25699999999886554
No 198
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=71.35 E-value=53 Score=28.81 Aligned_cols=107 Identities=8% Similarity=0.048 Sum_probs=64.4
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.+...+..+. .|..+|+.+.+.... +..+.. .+..+... +|.+.+....++.+.+|-+....
T Consensus 209 ~g~~l~sgs~Dg------~v~~wd~~~~~~~~~-~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--- 273 (354)
T 2pbi_B 209 TGNTFVSGGCDK------KAMVWDMRSGQCVQA-FETHES-----DVNSVRYYPSGDAFASGSDDATCRLYDLRADR--- 273 (354)
T ss_dssp SCCEEEEEETTS------CEEEEETTTCCEEEE-ECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEE-ecCCCC-----CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---
Confidence 355555555443 699999987664332 111111 11023333 67777777777799999886521
Q ss_pred ceEEEEEecC--CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 290 SWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 290 ~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
....+.. .......+.+.++|..++....++.+..||+.+++.
T Consensus 274 ---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 274 ---EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp ---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred ---EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 1222222 112345677788899777777788899999977663
No 199
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=70.42 E-value=46 Score=29.52 Aligned_cols=68 Identities=9% Similarity=0.219 Sum_probs=44.9
Q ss_pred CCeEEEEEc-C-------CCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 264 KGCLSLLCK-Y-------SEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 264 ~G~L~~~~~-~-------~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+++|+++.. . +....||+.+- .+...+.+++. . ..-+++.++|+.++.... +.+.+||.++++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~----~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDT----KTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEET----TTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEEC----CCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 367887754 1 11235666653 23566777777 5 556788889996666554 679999999995
Q ss_pred EEEEe
Q 044435 335 VESFL 339 (378)
Q Consensus 335 ~~~v~ 339 (378)
++.+.
T Consensus 337 l~~~~ 341 (361)
T 2oiz_A 337 PKLLR 341 (361)
T ss_dssp CEEEE
T ss_pred ceeeE
Confidence 56564
No 200
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=70.20 E-value=50 Score=28.09 Aligned_cols=97 Identities=5% Similarity=0.004 Sum_probs=52.4
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVI 305 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~ 305 (378)
.|..+|+.++.-....+..+.. .-. .+... ++.+.+....++.+.+|.+..... .. .+.. ......
T Consensus 120 ~v~lWd~~~~~~~~~~~~~h~~----~v~-~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~----~~~~~~~~~v~ 188 (304)
T 2ynn_A 120 TVKLWNWENNWALEQTFEGHEH----FVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NF----TLTTGQERGVN 188 (304)
T ss_dssp CEEEEEGGGTTEEEEEECCCCS----CEE-EEEECTTCTTEEEEEETTSEEEEEETTCSSC--SE----EEECCCTTCEE
T ss_pred eEEEEECCCCcchhhhhcccCC----cEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cc----eeccCCcCcEE
Confidence 6888998765221111111111 111 33333 456777777777999998865221 11 1111 111133
Q ss_pred EEEEEe--CCCEEEEEeCCCeEEEEECCCCeEE
Q 044435 306 PLAFSS--RGDKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 306 ~~~~~~--~g~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.+.+.+ ++..++-...++.+..+|+++++..
T Consensus 189 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (304)
T ss_dssp EEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence 444443 5666666777778999999887643
No 201
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=70.15 E-value=38 Score=32.81 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred CcceeeCCeEEEEee-cCCCcccceEEEEEEc-CCc--eeee
Q 044435 205 GNGAFVNGALHWLAN-QNQDEMINDLILAFDL-NIE--TFYS 242 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~-~~~~~~~~~~i~~fD~-~~~--~~~~ 242 (378)
..++..+|.+|.... .+ .|.+||. .++ .|+.
T Consensus 56 ~tP~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~lW~~ 90 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-------NTFALGLDDPGTILWQD 90 (599)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEE
T ss_pred eccEEECCEEEEEeCCCC-------EEEEEeCCCCCcEEEEE
Confidence 457889999999876 33 6999998 554 5554
No 202
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=69.72 E-value=93 Score=30.96 Aligned_cols=201 Identities=10% Similarity=0.037 Sum_probs=97.6
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR 186 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~ 186 (378)
+|-|-+......+..+||.++++..+...+...........++..|... . +.+.. ....+..|+..++.++
T Consensus 320 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g-~---lWiGt-----~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 320 QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK-N---LWIGT-----NDGGLNLYNPITQRFT 390 (795)
T ss_dssp TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS-C---EEEEE-----SSSCEEEECTTTCCEE
T ss_pred CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC-C---EEEEE-----CCCCeEEEcCCCCcEE
Confidence 3444444444567778888777665543322111001123344444332 1 22222 1124667777777777
Q ss_pred ecCcccCCCcccc--ccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE
Q 044435 187 RIKNIKNFPYSWA--DHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV 262 (378)
Q Consensus 187 ~~~~~~~~p~~~~--~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~ 262 (378)
..... +.... .....-.+++. +|.+.|++..+. .|..||..++++..+........ ...+..+..
T Consensus 391 ~~~~~---~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~------Gl~~~d~~~~~~~~~~~~~~~l~--~~~v~~i~~ 459 (795)
T 4a2l_A 391 SYTLQ---EDESARGIGSNNIKAVYVDEKKSLVYIGTHAG------GLSILHRNSGQVENFNQRNSQLV--NENVYAILP 459 (795)
T ss_dssp EECCC---------CCSCSCEEEEEEETTTTEEEEEETTT------EEEEEETTTCCEEEECTTTSCCS--CSCEEEEEE
T ss_pred EEecC---CCCcccCCCCccEEEEEEcCCCCEEEEEeCcC------ceeEEeCCCCcEEEeecCCCCcC--CCeeEEEEE
Confidence 65422 10000 00001113333 566678876643 69999999998887743211110 111213344
Q ss_pred E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEe----cCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTM----NENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i----~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
. +|.|.+... . - ++.++.. ...|...... .........+....+|. +.+... ..++.||++++++
T Consensus 460 d~~g~lwigt~-~-G--l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 460 DGEGNLWLGTL-S-A--LVRFNPE--QRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp CSSSCEEEEES-S-C--EEEEETT--TTEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE
T ss_pred CCCCCEEEEec-C-c--eeEEeCC--CCeEEEccccccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE
Confidence 3 578877765 2 2 2333321 1345443222 11111233344444666 777776 4599999988887
No 203
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=69.59 E-value=58 Score=28.57 Aligned_cols=156 Identities=9% Similarity=-0.051 Sum_probs=85.9
Q ss_pred eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCC
Q 044435 146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQ 222 (378)
Q Consensus 146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~ 222 (378)
...+.+.+....+-+.+-. ...+.+|+..++.....-.. .. ....-.++.+ +|.+...+..+.
T Consensus 76 v~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~---~~----h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSK-------GGDIILWDYDVQNKTSFIQG---MG----PGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEEEEECSSCTTEEEEEEB-------TSCEEEEETTSTTCEEEECC---CS----TTCBEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEECCCCCCEEEEEcC-------CCeEEEEeCCCcccceeeec---CC----cCCceeEEEeCCCCCCEEEEEeCCC
Confidence 3456666654344333321 24688888887655443211 00 0000112333 345555554442
Q ss_pred CcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCC
Q 044435 223 DEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENG 301 (378)
Q Consensus 223 ~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 301 (378)
.|..+|+.++....+........ .-. .+... +|.+.+....++.+.+|.+.. . .+..+....
T Consensus 142 ------~i~iwd~~~~~~~~~~~~~~~~~---~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~---~----~~~~~~~h~ 204 (383)
T 3ei3_B 142 ------ATTLRDFSGSVIQVFAKTDSWDY---WYC-CVDVSVSRQMLATGDSTGRLLLLGLDG---H----EIFKEKLHK 204 (383)
T ss_dssp ------EEEEEETTSCEEEEEECCCCSSC---CEE-EEEEETTTTEEEEEETTSEEEEEETTS---C----EEEEEECSS
T ss_pred ------EEEEEECCCCceEEEeccCCCCC---CeE-EEEECCCCCEEEEECCCCCEEEEECCC---C----EEEEeccCC
Confidence 79999999877776644322111 111 33333 677777777777999998842 1 222333211
Q ss_pred ceeEEEEEEeCCC-EEEEEeCCCeEEEEECCC
Q 044435 302 YRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 302 ~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~ 332 (378)
....-+.+.+++. +++....++.+..||+++
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 1255677777887 677777777899999987
No 204
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=69.36 E-value=90 Score=30.67 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=33.3
Q ss_pred EEEEEEcCCC--cEEecCcccCCCccc----cccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeee
Q 044435 174 EATVYGLKVN--LWRRIKNIKNFPYSW----ADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYS 242 (378)
Q Consensus 174 ~~~vyss~~~--~W~~~~~~~~~p~~~----~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~ 242 (378)
.+..++..++ .|+.-... +... .........++.+|.+|.....+ .|.++|..++ .|+.
T Consensus 81 ~v~AlD~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg-------~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 81 VVYALDARDGRLIWKYDPQS---DRHRAGEACCDAVNRGVAVWKGKVYVGVLDG-------RLEAIDAKTGQRAWSV 147 (689)
T ss_dssp CEEEEETTTCCEEEEECCCC---CGGGGGGCTTCSCCCCCEEETTEEEEECTTS-------EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCceeEEEcCCC---CccccccccccCCCCccEEECCEEEEEccCC-------EEEEEECCCCCEeeee
Confidence 4666776654 68864332 1100 00111233567789998866433 7999998765 4554
No 205
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=69.03 E-value=11 Score=27.56 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=29.6
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
.++++||.|++|....... ....+.+..|...+.|+|++..
T Consensus 12 ~V~~~d~~~~~W~p~~~~~------g~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 12 AVMVYDDANKKWVPAGGST------GFSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEETTTTEEEEGGGCC------SCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCceEECCCCC------CceEEEEEEECCCCEEEEEEEE
Confidence 4788899999886444211 2345678889888899999875
No 206
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=68.85 E-value=40 Score=33.21 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=59.5
Q ss_pred CcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCC---CCCCcccceEEEECCeEEEEEcCCCcEE
Q 044435 205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGN---EGGGGELSGVYVLKGCLSLLCKYSEPWD 278 (378)
Q Consensus 205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~---~~~~~~~~~l~~~~G~L~~~~~~~~~l~ 278 (378)
..++..+|.+|.....+ .|.++|..++ .|+.- ..+.... ....... ..+..+|+|++... ++.+
T Consensus 64 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~v~v~~~-dg~l- 133 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR-GVAVWKGKVYVGVL-DGRL- 133 (689)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEETTEEEEECT-TSEE-
T ss_pred ecCEEECCEEEEEcCCC-------eEEEEECCCCceeEEEcCCCCccccccccccCCCC-ccEEECCEEEEEcc-CCEE-
Confidence 45788999999987654 6999998654 55532 2221100 0000011 23455666666542 2232
Q ss_pred EEEeccCCCCcceEEEEEecC-C-C-ceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCeEEEE
Q 044435 279 LWVMKEYGVKDSWSKLFTMNE-N-G-YRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 279 iW~l~~~~~~~~W~~~~~i~~-~-~-~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v 338 (378)
..++-...+..|......+. . . ....|+.. +| .|++... ++.+++||.+|++..+-
T Consensus 134 -~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 134 -EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp -EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred -EEEECCCCCEeeeecCcCCCCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 23332112344654432121 1 1 11223322 34 3666532 34699999999885543
No 207
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=68.56 E-value=56 Score=27.96 Aligned_cols=110 Identities=14% Similarity=-0.045 Sum_probs=65.8
Q ss_pred eeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCC
Q 044435 208 AFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYG 286 (378)
Q Consensus 208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~ 286 (378)
...++.+|.+.... ..+.+||..+.+- ..|+.+.... .|+..+++|++... .-.|+++|..
T Consensus 102 t~~g~~Ly~ltw~~------~~v~V~D~~Tl~~~~ti~~~~eGw--------GLt~Dg~~L~vSdG---s~~l~~iDp~- 163 (268)
T 3nok_A 102 ASDGERLYQLTWTE------GLLFTWSGMPPQRERTTRYSGEGW--------GLCYWNGKLVRSDG---GTMLTFHEPD- 163 (268)
T ss_dssp EECSSCEEEEESSS------CEEEEEETTTTEEEEEEECSSCCC--------CEEEETTEEEEECS---SSEEEEECTT-
T ss_pred EEeCCEEEEEEccC------CEEEEEECCcCcEEEEEeCCCcee--------EEecCCCEEEEECC---CCEEEEEcCC-
Confidence 44567888887655 3899999987544 4566653321 45666678888763 2256677752
Q ss_pred CCcceEEEEEecC-CC----ceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEE-EeE
Q 044435 287 VKDSWSKLFTMNE-NG----YRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVES-FLV 340 (378)
Q Consensus 287 ~~~~W~~~~~i~~-~~----~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~-v~~ 340 (378)
+=....+|.. .. ....-+... +|. |+.... ...+...|++++++.. |..
T Consensus 164 ---T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 164 ---GFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp ---TCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred ---CCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 2234455554 21 111223333 675 777653 5569999999999644 444
No 208
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=68.03 E-value=52 Score=29.19 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=86.4
Q ss_pred EEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccc--cccccCCcceee-----CCeEEEEeec
Q 044435 148 GFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSW--ADHSYGGNGAFV-----NGALHWLANQ 220 (378)
Q Consensus 148 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~--~~~~~~~~~v~~-----~G~lyw~~~~ 220 (378)
+..||+..+.|.+--+ ....+.+++..++.=..+ .. |... +.......++.+ +|.|+.+...
T Consensus 17 ~~~wd~~~g~~~vs~l-------~~g~V~~~~~~~~~~~~~-~~---~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNL-------YKGRIEVYNPKTQSHFNV-VI---DGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp CEEEETTTTEEEEEET-------TTTEEEEECTTTCCEEEE-CC---TTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred CccCcCCCCEEEEEec-------cCCEEEEEcCCCCeEEEE-ec---CCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 4567776666555332 235677777765532233 22 1100 000112246666 4667665442
Q ss_pred CCC-------cccceEEEEEEcC---Ccee-eeecCCCCCCC-----C-CCcccceEEEE-CCeEEEEEcCCCcEEEEEe
Q 044435 221 NQD-------EMINDLILAFDLN---IETF-YSMPMPGFGNE-----G-GGGELSGVYVL-KGCLSLLCKYSEPWDLWVM 282 (378)
Q Consensus 221 ~~~-------~~~~~~i~~fD~~---~~~~-~~i~lP~~~~~-----~-~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l 282 (378)
+.. ......+++||+. +++- ..++|+..... . .......+++. +|..|+...... =.||..
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~-~~I~rV 164 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM-PAIARV 164 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS-CEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC-CeEEEE
Confidence 110 0123589999988 4433 33466431110 0 00001133443 688888765430 237777
Q ss_pred ccCCCC-cceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435 283 KEYGVK-DSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 283 ~~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
+.++.. ..|-.............-++++++|..++.....++++.+|+++.
T Consensus 165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 765532 224321111111222445778888987777766778999998853
No 209
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=67.51 E-value=66 Score=28.39 Aligned_cols=175 Identities=10% Similarity=0.013 Sum_probs=79.4
Q ss_pred EeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435 102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK 181 (378)
Q Consensus 102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 181 (378)
+.-+-+|-++.........+++..+++.........+ ......+.|.|.. .+.+.+ .. + ......+..++..
T Consensus 182 v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~v~fspdg-~~l~~~-s~-d-~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 182 LHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK----NWSLSKINFIADD-TVLIAA-SL-K-KGKGIVLTKISIK 253 (365)
T ss_dssp EEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT----TEEEEEEEEEETT-EEEEEE-EE-S-SSCCEEEEEEEEE
T ss_pred EEEccCCceEEeccceeEEEEEeccCcceeeeecCCC----CCCEEEEEEcCCC-CEEEEE-ec-C-CcceeEEeecccc
Confidence 4445566666665566788888888775432221111 1123344555432 222222 11 1 1223345556655
Q ss_pred CCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435 182 VNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY 261 (378)
Q Consensus 182 ~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~ 261 (378)
........... +.. .......-.+.-+|.+...+..+. .|..+|+.+.+....-+..+.. .+..++
T Consensus 254 ~~~~~~~~~~~-~~~--~~~~V~~~~~Spdg~~lasgs~D~------~V~iwd~~~~~~~~~~~~gH~~-----~V~~v~ 319 (365)
T 4h5i_A 254 SGNTSVLRSKQ-VTN--RFKGITSMDVDMKGELAVLASNDN------SIALVKLKDLSMSKIFKQAHSF-----AITEVT 319 (365)
T ss_dssp TTEEEEEEEEE-EES--SCSCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEETTSSSS-----CEEEEE
T ss_pred cceecceeeee-ecC--CCCCeEeEEECCCCCceEEEcCCC------EEEEEECCCCcEEEEecCcccC-----CEEEEE
Confidence 55443322110 000 000000001222677776666553 6999999886643322222221 111344
Q ss_pred EE-CCeEEEEEcCCCcEEEEEeccC-CC-CcceEEEEEec
Q 044435 262 VL-KGCLSLLCKYSEPWDLWVMKEY-GV-KDSWSKLFTMN 298 (378)
Q Consensus 262 ~~-~G~L~~~~~~~~~l~iW~l~~~-~~-~~~W~~~~~i~ 298 (378)
.. +|++.+....+.+++||.+... .. ..-|.++..+.
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~ 359 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKISKLE 359 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCTTTTC------------
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccceeee
Confidence 44 7888777777789999999642 21 23355554443
No 210
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=66.78 E-value=63 Score=27.90 Aligned_cols=117 Identities=9% Similarity=0.001 Sum_probs=67.5
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-C--CeEEEEEcCCCcEEEEEeccCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-K--GCLSLLCKYSEPWDLWVMKEYG 286 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~--G~L~~~~~~~~~l~iW~l~~~~ 286 (378)
+|.+...+..+. .|..+|..++.+..+ .+..+... -. .+... + +.+.+....++.+.||.+....
T Consensus 164 ~~~~l~s~s~D~------~i~iW~~~~~~~~~~~~~~~h~~~----v~-~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 164 SEALLASSSYDD------TVRIWKDYDDDWECVAVLNGHEGT----VW-SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SSSEEEEEETTS------CEEEEEEETTEEEEEEEECCCSSC----EE-EEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCCEEEEEcCCC------eEEEEECCCCCeeEEEEccCCCCc----EE-EEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 455555554442 688888877665544 33322211 11 22332 2 3444455556699999886532
Q ss_pred --CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 287 --VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 287 --~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
....|.....+.. .......+++.+++ .++....++.+..||..+++++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence 1345777666653 22224556666444 4777777778999999998876653
No 211
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=66.67 E-value=67 Score=28.20 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=62.1
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcC-Cceeeee---cCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEecc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLN-IETFYSM---PMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~-~~~~~~i---~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~ 284 (378)
+|...+.+..+. ..|..||+. +++...+ .+|..... +..++.. +|+ |+++.....++.+|.++.
T Consensus 155 dG~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~~g~~-----p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 155 TETYLYSADLTA-----NKLWTHRKLASGEVELVGSVDAPDPGDH-----PRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp TSSEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECSSTTCC-----EEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEcCCC-----CEEEEEEECCCCCEEEeeeEecCCCCCC-----CCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 576444444332 378889987 6665433 44421111 1033443 564 555554455899998874
Q ss_pred CCCCcceEE-EEEecC-CC-----c-------eeEEEE-EEeCCCEEEEEeC-CC-----eEEEEECC-CCeEEEE
Q 044435 285 YGVKDSWSK-LFTMNE-NG-----Y-------RVIPLA-FSSRGDKVLFQKN-SK-----DHCWYHLD-MHRVESF 338 (378)
Q Consensus 285 ~~~~~~W~~-~~~i~~-~~-----~-------~~~~~~-~~~~g~~v~~~~~-~~-----~~~~ydl~-~~~~~~v 338 (378)
.. ..... ...+.. .. . ...-++ +.++|+.+++... .. .+.+|+++ +++++.+
T Consensus 225 ~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~ 298 (365)
T 1jof_A 225 AT--HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp TT--CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred CC--CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe
Confidence 21 12322 122322 11 1 244566 7789997766543 22 68899885 6777754
No 212
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=66.56 E-value=1e+02 Score=30.13 Aligned_cols=192 Identities=6% Similarity=0.004 Sum_probs=97.5
Q ss_pred cEEEEcCcc-cceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435 118 GIILLNPLT-KKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY 196 (378)
Q Consensus 118 ~~~V~NP~t-~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~ 196 (378)
.++++|..+ ++...+...... ......+.+ +.+ .+-++... ........+.+++..++..+.+-.. ..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~-pDg-~~l~~~~~--~~~~~~~~i~~~d~~~g~~~~~~~~---~~ 332 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQ----DIYLARVNW-RDP-QHLSFQRQ--SRDQKKLDLVEVTLASNQQRVLAHE---TS 332 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCS----SEEEEEEEE-EET-TEEEEEEE--ETTSSEEEEEEEETTTCCEEEEEEE---EC
T ss_pred EEEEEECCCCCceEEecCCCCc----ceEEEEEEe-CCC-CEEEEEEe--cccCCeEEEEEEECCCCceEEEEEc---CC
Confidence 678889988 877665433111 112334556 543 33333322 2233456788889888877655322 10
Q ss_pred cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE-EEE-CC-eEEEEEcC
Q 044435 197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV-YVL-KG-CLSLLCKY 273 (378)
Q Consensus 197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l-~~~-~G-~L~~~~~~ 273 (378)
..-......-...-+|.+++.+..++. ..|..+|.... ...+ ..+.. ....+ ... +| .|++....
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~----~~l~~~~~~~~-~~~l--~~~~~-----~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGF----QHLYRIDSKGK-AAAL--THGNW-----SVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSS----CEEEEECSSSC-EEES--CCSSS-----CEEEEEEEETTTTEEEEEECS
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCc----cEEEEEcCCCC-eeee--eecce-----EEEeEeEEeCCCCEEEEEEeC
Confidence 000000011123347887777655421 36888887655 3333 22211 11022 233 56 46555555
Q ss_pred CC--cEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEE
Q 044435 274 SE--PWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESF 338 (378)
Q Consensus 274 ~~--~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v 338 (378)
++ ++.||.++..+.. ...+.. ......+.+.++|+.+++...+ ..++.+|.+++..+.+
T Consensus 401 ~~~~~~~l~~~~~~g~~-----~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l 465 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQ-----PQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIATL 465 (741)
T ss_dssp SCTTCBEEEEEETTCCC-----CEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECS
T ss_pred CCCceEEEEEEEcCCCC-----eeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEe
Confidence 44 8899998743311 122222 1113456777888866665432 2488888776655443
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=66.25 E-value=57 Score=27.19 Aligned_cols=196 Identities=12% Similarity=0.043 Sum_probs=100.5
Q ss_pred EeeeccceEEEeec-CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKNY-PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~~-~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+....+|.+.+... ...++++||. ++...+..+.. .....++.+|+.. ...|. . . ....+..|+.
T Consensus 67 i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v~---~-~---~~~~i~~~~~ 132 (300)
T 2qc5_A 67 LIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQP-----DSGPYGITEGLNG-DIWFT---Q-L---NGDRIGKLTA 132 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-----TCCEEEEEECSTT-CEEEE---E-T---TTTEEEEECT
T ss_pred EEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCC-----CCCCccceECCCC-CEEEE---c-c---CCCeEEEECC
Confidence 33345676666653 5678899998 66654432211 1123456666533 32221 1 1 1235666766
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS 258 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~ 258 (378)
. +....... +. .. ....++.+ +|.+|+..... ..|..||. +.++..+.+|..... -.
T Consensus 133 ~-g~~~~~~~----~~--~~--~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~----~~- 191 (300)
T 2qc5_A 133 D-GTIYEYDL----PN--KG--SYPAFITLGSDNALWFTENQN------NSIGRITN-TGKLEEYPLPTNAAA----PV- 191 (300)
T ss_dssp T-SCEEEEEC----SS--TT--CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTCC----EE-
T ss_pred C-CCEEEccC----CC--CC--CCceeEEECCCCCEEEEecCC------CeEEEECC-CCcEEEeeCCCCCCC----cc-
Confidence 5 54443311 11 00 01123333 57866655433 27999999 666666666543321 11
Q ss_pred eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEE
Q 044435 259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVE 336 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~ 336 (378)
.+... +|.|++.......+.++ +.. ...... .++.......-+++.++|. +++... ...+..||+ +++++
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~--~~~---g~~~~~-~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRI--TTT---GEISEY-DIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN-DNTIQ 263 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEE--CTT---CCEEEE-ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT-TSCEE
T ss_pred eEEECCCCCEEEEccCCCEEEEE--cCC---CcEEEE-ECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC-CCcEE
Confidence 34443 68888887654454444 332 123322 2222221244456666777 666654 457999999 56666
Q ss_pred EEeE
Q 044435 337 SFLV 340 (378)
Q Consensus 337 ~v~~ 340 (378)
.+..
T Consensus 264 ~~~~ 267 (300)
T 2qc5_A 264 EYQL 267 (300)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5544
No 214
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=66.16 E-value=1.1e+02 Score=30.27 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=36.5
Q ss_pred Ccceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcE
Q 044435 205 GNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPW 277 (378)
Q Consensus 205 ~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l 277 (378)
..++.+ +|.|||..... ..|.+||+.......+ ..+..... -. .|+..+++||++.....+|
T Consensus 542 PnGlavd~~~~~LY~aD~~~------~~I~~~d~dG~~~~~~~~~~~~~~~----P~-glavd~~~lywtd~~~~~V 607 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKL------HSISSIDVNGGNRKTILEDEKRLAH----PF-SLAVFEDKVFWTDIINEAI 607 (699)
T ss_dssp CCCEEECTTTCCEEEEETTT------TEEEEECSSSSCCEEECCCSSSCSS----CC-CCEEETTEEEEECSTTTCE
T ss_pred ccEEEEeccCCEEEEEecCC------CeEEEEccCCCceEEEEecCCcCCC----ce-EeEEECCEEEEEeCCCCeE
Confidence 346666 48899987544 3799999976444444 32222111 11 4566678888877544444
No 215
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=66.02 E-value=63 Score=27.62 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=21.7
Q ss_pred EEEEe-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 307 LAFSS-RGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 307 ~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+++.+ +|..+++. +..+..||+++.+..+.
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 44457 88866666 56799999999886443
No 216
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=65.93 E-value=73 Score=28.36 Aligned_cols=67 Identities=7% Similarity=0.100 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
+|++.+....+.++.||-+...+ .......... ...-+++++++. .++....++.+..||+++++..
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~-----~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEG-----PILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTE-----EEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred CCCEEEEEECCCeEEEEECCCCc-----eeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 67888888888899999987521 1111222211 244577777765 4555666777999999987654
No 217
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=65.90 E-value=77 Score=28.62 Aligned_cols=174 Identities=13% Similarity=0.021 Sum_probs=87.9
Q ss_pred eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCC
Q 044435 146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQ 222 (378)
Q Consensus 146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~ 222 (378)
..++++|...+...+.- .....+++++.+...-+.+... . .....++.+ +|.|||......
T Consensus 161 p~glavD~~~~~lY~~d-------~~~~~I~~~~~~g~~~~~l~~~-------~--~~~P~~iavdp~~g~ly~td~~~~ 224 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTD-------SVLGTVSVADTKGVKRKTLFRE-------N--GSKPRAIVVDPVHGFMYWTDWGTP 224 (400)
T ss_dssp EEEEEEETTTTEEEEEE-------TTTTEEEEECTTTCSEEEEEEC-------S--SCCEEEEEEETTTTEEEEEECSSS
T ss_pred cccEEEEecCCceEEEE-------CCCCeEEEEeCCCCceEEEEeC-------C--CCCcceEEEecccCeEEEEeCCCC
Confidence 44778887655433321 1123667777765544333211 0 111234554 589999874322
Q ss_pred CcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCC
Q 044435 223 DEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNEN 300 (378)
Q Consensus 223 ~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 300 (378)
..|..+|+....-..+-. .... .+..|+.. +|+||++.....+ ||..+-.+. ...+... ....
T Consensus 225 -----~~I~~~~~dG~~~~~~~~-~~l~-----~P~glavd~~~~~lY~aD~~~~~--I~~~d~dG~-~~~~~~~-~~~~ 289 (400)
T 3p5b_L 225 -----AKIKKGGLNGVDIYSLVT-ENIQ-----WPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGG-NRKTILE-DEKR 289 (400)
T ss_dssp -----CCEEEEETTSCSCEEEEC-SSCS-----CEEEEEEETTTTEEEEEETTTTE--EEEEETTSC-CCEEEEE-CSST
T ss_pred -----CEEEEEeCCCCccEEEEE-CCCC-----ceEEEEEEeCCCEEEEEECCCCE--EEEEeCCCC-ccEEEEe-CCCC
Confidence 369999987654433311 1111 11145555 6899998765444 555553332 2222211 1112
Q ss_pred CceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCe-EEEEeEeC-C--cceEEeeecc
Q 044435 301 GYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHR-VESFLVKG-P--SDVHVCVDTL 353 (378)
Q Consensus 301 ~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~-~~~v~~~~-~--~~~~~y~~sl 353 (378)
+ ..|.++.-+++.|++... ...+..+|..+++ .+.|. .+ . ..+.+|.+..
T Consensus 290 l--~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~-~~~~~p~~i~v~~~~~ 344 (400)
T 3p5b_L 290 L--AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLFHNLT 344 (400)
T ss_dssp T--SSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE-CSCSCEEEEEEESGGG
T ss_pred C--CCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe-cCCCCCceEEEEeecc
Confidence 2 345555545555666654 3459999965554 44443 22 2 2555665543
No 218
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=65.58 E-value=56 Score=26.89 Aligned_cols=186 Identities=14% Similarity=0.015 Sum_probs=97.8
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC-CcEEecCcccCC
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV-NLWRRIKNIKNF 194 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~-~~W~~~~~~~~~ 194 (378)
...++++|+.+++...+..... ....+.+.|... +-++. . ...+.+++..+ +....+...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~-------~v~~~~~spdg~-~l~~~--~------~~~i~~~d~~~~~~~~~~~~~--- 81 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE-------LFEAPNWSPDGK-YLLLN--S------EGLLYRLSLAGDPSPEKVDTG--- 81 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS-------CCEEEEECTTSS-EEEEE--E------TTEEEEEESSSCCSCEECCCT---
T ss_pred ceeEEEEeCCCCceeeeccCCc-------ceEeeEECCCCC-EEEEE--c------CCeEEEEeCCCCCCceEeccc---
Confidence 4568899999988776654321 123555655433 32222 1 23688899888 766554322
Q ss_pred CccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-EEEEEc
Q 044435 195 PYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCK 272 (378)
Q Consensus 195 p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~ 272 (378)
+. ......-...-+|........... ....|..+|..+.+...+..... .. .+... +|+ |++...
T Consensus 82 ~~---~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~-------~~-~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 82 FA---TICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP-------SY-WHGWSPDGKSFTYCGI 148 (297)
T ss_dssp TC---CCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS-------EE-EEEECTTSSEEEEEEE
T ss_pred cc---cccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC-------cc-ceEECCCCCEEEEEEC
Confidence 10 001111122235654444432110 11478888887776555432221 11 22333 565 444555
Q ss_pred CCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CC--eEEEEECCCCeEEEE
Q 044435 273 YSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SK--DHCWYHLDMHRVESF 338 (378)
Q Consensus 273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~--~~~~ydl~~~~~~~v 338 (378)
.++.+.||.++.... .. ..+.........+.+.++|..+++... +. +++.+++.+++.+.+
T Consensus 149 ~~~~~~l~~~~~~~~--~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSG--VE---TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp ETTEEEEEEEETTTC--CE---EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred CCCceEEEEEECCCC--cc---eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 556889999875321 11 122221112455677788886766653 32 478888888777766
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=65.10 E-value=37 Score=30.26 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=18.7
Q ss_pred ccceEEEeecCCcEEEEcCccccee
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHR 130 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~ 130 (378)
.+|+|.+......++.+|+.|++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~ 32 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK 32 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE
Confidence 4667776666667889999998755
No 220
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=64.72 E-value=92 Score=29.08 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.....+..+. .|..||...+....+.-... .+..+... +|++.+....++.+.+|.++.
T Consensus 396 dg~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~-------~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----- 457 (577)
T 2ymu_A 396 DGQTIASASDDK------TVKLWNRNGQLLQTLTGHSS-------SVWGVAFSPDDQTIASASDDKTVKLWNRNG----- 457 (577)
T ss_dssp TSSCEEEEETTS------EEEEECTTCCEEEEEECCSS-------CEEEEEECTTSSEEEEEETTSEEEEEETTS-----
T ss_pred CCCEEEEEeCCC------EEEEEeCCCCEEEEecCCCC-------CeEEEEECCCCCEEEEEcCCCEEEEEECCC-----
Confidence 455444444432 68888876655444422111 11033333 677766666667899997542
Q ss_pred ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.....+........-+++.++|..++....++.+..||..++..+.+
T Consensus 458 --~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 458 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE
T ss_pred --CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE
Confidence 12233333111255678888999777777777899999877666655
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=64.66 E-value=72 Score=27.82 Aligned_cols=75 Identities=15% Similarity=-0.024 Sum_probs=41.6
Q ss_pred ceee--CCeEEEEeecCCCcccceEEEEEEcCCce-eeeecCCCCCCCCCCcccceEEEE--CCeEEEEEc---CCCcEE
Q 044435 207 GAFV--NGALHWLANQNQDEMINDLILAFDLNIET-FYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCK---YSEPWD 278 (378)
Q Consensus 207 ~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~---~~~~l~ 278 (378)
++.+ +|.|||+..... ......|+.||+.+++ ...+.+|.........-. .++.. +|.+++... ....+.
T Consensus 71 gv~~d~~g~L~v~D~g~~-~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~~~~~i~ 148 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQ-SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPDDKAALI 148 (343)
T ss_dssp EEEECSSSEEEEEECHHH-HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSGGGCEEE
T ss_pred EEEEcCCCcEEEEcCCCC-cCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccCCCCeEE
Confidence 5555 488998864310 0001379999999877 556677643221111111 45665 467877765 333555
Q ss_pred EEEec
Q 044435 279 LWVMK 283 (378)
Q Consensus 279 iW~l~ 283 (378)
+|-++
T Consensus 149 v~d~~ 153 (343)
T 2qe8_A 149 RVDLQ 153 (343)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 55554
No 222
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=64.63 E-value=43 Score=28.36 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCeEEEE-------eecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-C-CeEEEEEcCCCcEEEEE
Q 044435 211 NGALHWL-------ANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-K-GCLSLLCKYSEPWDLWV 281 (378)
Q Consensus 211 ~G~lyw~-------~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~-G~L~~~~~~~~~l~iW~ 281 (378)
+|.+|+. .... ..|..||+.++++..+..|...... ..-. .+... + |+|+++.... . |+.
T Consensus 28 ~g~l~~~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~-~~~~-~i~~~~~~g~l~v~~~~~-~--l~~ 96 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPA------GEILRIDLKTGKKTVICKPEVNGYG-GIPA-GCQCDRDANQLFVADMRL-G--LLV 96 (314)
T ss_dssp TSCEEEEETTCEETTEEC------CEEEEECTTTCCEEEEECCEETTEE-CCEE-EEEECSSSSEEEEEETTT-E--EEE
T ss_pred CCCEEEEEeccccCCCCC------CEEEEEeCCCCcEEEEEecccCCCC-CCCc-eEEEecCCCcEEEEECCC-C--EEE
Confidence 6888887 3332 2799999988888776543110000 0111 34443 5 7888877533 3 444
Q ss_pred eccCCCCcceEEE-EEecC--CCceeEEEEEEeCCCEEEEEeCC----------------CeEEEEECCCCeEEEE
Q 044435 282 MKEYGVKDSWSKL-FTMNE--NGYRVIPLAFSSRGDKVLFQKNS----------------KDHCWYHLDMHRVESF 338 (378)
Q Consensus 282 l~~~~~~~~W~~~-~~i~~--~~~~~~~~~~~~~g~~v~~~~~~----------------~~~~~ydl~~~~~~~v 338 (378)
++..+ ..... ..... ......-+++.++|. +++.... ..++.||++ ++.+.+
T Consensus 97 ~d~~g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 97 VQTDG---TFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EETTS---CEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred EeCCC---CEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 44322 12211 11111 111234466666787 5555432 358999987 555544
No 223
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=64.01 E-value=1.2e+02 Score=30.34 Aligned_cols=114 Identities=9% Similarity=0.003 Sum_probs=59.3
Q ss_pred ceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEE
Q 044435 207 GAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWV 281 (378)
Q Consensus 207 ~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~ 281 (378)
++.+ +|.|||..... ..|.++|+.......+-. .... .+..|++. +|.||+...... -.|++
T Consensus 475 GLAvD~~~~~LY~tD~~~------~~I~v~~ldG~~~~~l~~-~~l~-----~P~gIaVDp~~g~LYwtD~g~~-~~I~~ 541 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFR-ENGS-----KPRAIVVDPVHGFMYWTDWGTP-AKIKK 541 (791)
T ss_dssp EEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEEE-CTTC-----CEEEEEEETTTTEEEEEECSSS-CEEEE
T ss_pred eeeeeecCCcEEEEecCC------CeEEEEeCCCCeEEEEEe-CCCC-----CcceEEEecCCCCEEEecCCCC-CeEEE
Confidence 5555 47999987654 379999998665544411 1111 11145553 588988875432 23444
Q ss_pred eccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 282 MKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 282 l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
.+-.+... ..+-. .+....-+++...++.|++... ..++..+|+++...+.+
T Consensus 542 ~~~dG~~~-----~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 542 GGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EETTSCCE-----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EecCCCce-----EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 44322211 11111 2212333444433444555543 33577888877666665
No 224
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=63.80 E-value=85 Score=28.35 Aligned_cols=184 Identities=9% Similarity=-0.026 Sum_probs=89.5
Q ss_pred CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC----cEEecCcc
Q 044435 116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN----LWRRIKNI 191 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~----~W~~~~~~ 191 (378)
...+...++.++....+-+. .....++.+|+..+...++-. ....+..++.... ....+...
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~-------~~~~~~l~~d~~~~~lywsD~-------~~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPN-------LRNVVALDTEVASNRIYWSDL-------SQRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp TTEEEEECTTSCSCEEEECS-------CSCEEEEEEETTTTEEEEEET-------TTTEEEEEEC------CCCEEEECS
T ss_pred cceeEEEccCCcceeEeccc-------cCcceEEeeeeccCceEEEec-------CCCeEEEEEcccCCCCCcceEEEeC
Confidence 34566677766655444221 223557888876654332211 1234555555431 11111110
Q ss_pred cCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCe
Q 044435 192 KNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGC 266 (378)
Q Consensus 192 ~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~ 266 (378)
. .....++.+ +|.|||..... ..|.++|+.......+-- .... .+..|++. +|.
T Consensus 157 -------~--~~~p~glavD~~~~~lY~~d~~~------~~I~~~~~~g~~~~~l~~-~~~~-----~P~~iavdp~~g~ 215 (400)
T 3p5b_L 157 -------D--IQAPDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFR-ENGS-----KPRAIVVDPVHGF 215 (400)
T ss_dssp -------S--CSCEEEEEEETTTTEEEEEETTT------TEEEEECTTTCSEEEEEE-CSSC-----CEEEEEEETTTTE
T ss_pred -------C--CCCcccEEEEecCCceEEEECCC------CeEEEEeCCCCceEEEEe-CCCC-----CcceEEEecccCe
Confidence 0 111224443 68999987654 379999998765544411 1111 11144553 688
Q ss_pred EEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEEe
Q 044435 267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v~ 339 (378)
||....... -.|+..+-.+... .. .+...+....-+++..+++.|++... ...+..+|+++...+.+.
T Consensus 216 ly~td~~~~-~~I~~~~~dG~~~---~~-~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 216 MYWTDWGTP-AKIKKGGLNGVDI---YS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp EEEEECSSS-CCEEEEETTSCSC---EE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred EEEEeCCCC-CEEEEEeCCCCcc---EE-EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence 888775432 1344444322211 00 01112222344555555555666654 345888888877666663
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=63.73 E-value=1.9 Score=39.09 Aligned_cols=28 Identities=7% Similarity=-0.047 Sum_probs=16.8
Q ss_pred cceeeCCeEEEEeecCCCcccceEEEEEEcCCcee
Q 044435 206 NGAFVNGALHWLANQNQDEMINDLILAFDLNIETF 240 (378)
Q Consensus 206 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~ 240 (378)
.++..+|.+|.-...+ .|.++|..+++-
T Consensus 4 sP~v~~~~v~~gs~dg-------~v~a~d~~tG~~ 31 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDG-------SLHAVSKRTGSI 31 (369)
T ss_dssp ----CTTEEEEEETTS-------EEEEEETTTCCE
T ss_pred CCeeeCCEEEEEcCCC-------EEEEEECCCCCE
Confidence 3566777888765443 799999876543
No 226
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=62.17 E-value=75 Score=27.22 Aligned_cols=196 Identities=8% Similarity=-0.010 Sum_probs=96.0
Q ss_pred cce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435 107 NGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-- 183 (378)
Q Consensus 107 ~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-- 183 (378)
+|- |+....+..+.+||..+++....-... .....+.+.+.. .+-+++. . ........+.+|+..++
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~-~~l~~~~-~-~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSP-------VPVKRVEFSPCG-NYFLAIL-D-NVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECS-------SCEEEEEECTTS-SEEEEEE-C-CBTTBCCEEEEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecC-------CCeEEEEEccCC-CEEEEec-C-CccCCCCEEEEEEecCCcc
Confidence 443 444446677899999888765443311 123355565543 2322221 1 10111245666665432
Q ss_pred --cEEecCcccCCCcccccccc----CCcc--eeeCCeEEEEeecCCCcccceEEEEEEcCC-ce-eeeecCCCCCCCCC
Q 044435 184 --LWRRIKNIKNFPYSWADHSY----GGNG--AFVNGALHWLANQNQDEMINDLILAFDLNI-ET-FYSMPMPGFGNEGG 253 (378)
Q Consensus 184 --~W~~~~~~~~~p~~~~~~~~----~~~~--v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~-~~-~~~i~lP~~~~~~~ 253 (378)
.+...... +.. ..... .-.. ..-+|.....+..++ .|..||+.+ .+ ...+.....
T Consensus 155 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~----- 219 (369)
T 3zwl_B 155 THELTKVSEE---PIH-KIITHEGLDAATVAGWSTKGKYIIAGHKDG------KISKYDVSNNYEYVDSIDLHEK----- 219 (369)
T ss_dssp TCCEEEECSS---CSE-EEECCTTCCCEEEEEECGGGCEEEEEETTS------EEEEEETTTTTEEEEEEECCSS-----
T ss_pred ceeecccccc---eee-eccCCcCccceeEEEEcCCCCEEEEEcCCC------EEEEEECCCCcEeEEEEecCCC-----
Confidence 22222111 100 00000 0011 122565555554442 799999987 33 233332211
Q ss_pred CcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC--------
Q 044435 254 GGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK-------- 323 (378)
Q Consensus 254 ~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~-------- 323 (378)
.+..+... +|.+.++...++.+.+|.+... .....+.. .. ...+.+.++|..++....++
T Consensus 220 --~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 220 --SISDMQFSPDLTYFITSSRDTNSFLVDVSTL------QVLKKYETDCP--LNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp --CEEEEEECTTSSEEEEEETTSEEEEEETTTC------CEEEEEECSSC--EEEEEECSSSSEEEEEECCC--------
T ss_pred --ceeEEEECCCCCEEEEecCCceEEEEECCCC------ceeeeecCCCC--ceeEEecCCCceEEEeecCCCceEEEEe
Confidence 11023333 6777777767778999988752 12222223 22 44566667777666665544
Q ss_pred ------eEEEEECCCCeEEE
Q 044435 324 ------DHCWYHLDMHRVES 337 (378)
Q Consensus 324 ------~~~~ydl~~~~~~~ 337 (378)
.+..||..+.+...
T Consensus 290 ~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 290 ANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp -----CEEEEEETTTCCEEE
T ss_pred cCCCcceeEEEecCCCcchh
Confidence 58888887766443
No 227
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=62.01 E-value=82 Score=27.56 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCc-EEEEEeccCCCCcceEEEEEec-C-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435 264 KGCLSLLCKYSEP-WDLWVMKEYGVKDSWSKLFTMN-E-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR 334 (378)
Q Consensus 264 ~G~L~~~~~~~~~-l~iW~l~~~~~~~~W~~~~~i~-~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~ 334 (378)
+|++.+....+++ +.||-+.. ...+..+. . ......-+++.++|..++....++.+..||+++..
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTED------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTT------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 6888777777787 99998875 23344454 1 12235667888899977777778889999997653
No 228
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=60.37 E-value=16 Score=26.78 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.7
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEE
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHV 165 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 165 (378)
.++++||.|++|. |...... ..+.+.+..|...+.|.|++..-
T Consensus 12 ~V~~~d~~~~~W~--p~~~g~~---gvs~V~~~~d~~~~~yrI~~~~l 54 (115)
T 1egx_A 12 TVMLYDDGNKRWL--PAGTGPQ---AFSRVQIYHNPTANSFRVVGRKM 54 (115)
T ss_dssp ECBEECTTTSSCC--BSSCSCC---CCEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEEcCCCCcee--ECCCCCC---CccEEEEEEeCCCCEEEEEEEEc
Confidence 4678899999985 4332100 23456788898889999988753
No 229
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=60.10 E-value=84 Score=27.10 Aligned_cols=193 Identities=10% Similarity=0.044 Sum_probs=93.8
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--cEEecCcccCCC
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--LWRRIKNIKNFP 195 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--~W~~~~~~~~~p 195 (378)
.++++|+.|++....-... . .....++.+|+..+ ..|. . .....+.+|+.... .=..+... ..
T Consensus 70 ~i~~~d~~~g~~~~~~~~~---~--~~~p~gia~d~~g~-l~v~---d----~~~~~v~~~~~~g~~~~~~~~~~~--~~ 134 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKN---L--FYLPHGLSIDTDGN-YWVT---D----VALHQVFKLDPHSKEGPLLILGRS--MQ 134 (329)
T ss_dssp CEEEECTTTCCEEEEECTT---T--CSSEEEEEECTTSC-EEEE---E----TTTTEEEEECTTCSSCCSEEESBT--TB
T ss_pred cEEEEECCCCeEEeccCCC---c--cCCceEEEECCCCC-EEEE---E----CCCCEEEEEeCCCCeEEEEEeccc--CC
Confidence 5899999998875432111 0 12344677776543 2221 1 12346777877543 11222111 00
Q ss_pred ccccc-cccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC---CCCCcccceEEEE-C-Ce
Q 044435 196 YSWAD-HSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN---EGGGGELSGVYVL-K-GC 266 (378)
Q Consensus 196 ~~~~~-~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~---~~~~~~~~~l~~~-~-G~ 266 (378)
.+... ......++.+ +|.+|+...... ..|..||........+..+.... ......+..++.. + |.
T Consensus 135 ~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~-----~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 135 PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN-----SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp CCCSTTCCSSEEEEEECTTTCCEEEEECSSC-----CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred CCCCccccCCCcEEEEeCCCCeEEEEeCCCC-----CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence 00000 0112234555 588888874222 37999997665555553221110 0000111134554 4 89
Q ss_pred EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEe--------CCCeEEEEECCCCeEE
Q 044435 267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQK--------NSKDHCWYHLDMHRVE 336 (378)
Q Consensus 267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~--------~~~~~~~ydl~~~~~~ 336 (378)
|+++.....++.+|..+. .... ..+.. ......-+++.+ |. ++... ....++.+|+.++++.
T Consensus 210 l~v~d~~~~~I~~~~~~~----G~~~--~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDT----KEFV--REIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp EEEEETTTTEEEEEETTT----CCEE--EEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred EEEEECCCCEEEEEECCC----CcEE--EEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence 999887777888887762 1232 33322 111122344444 22 22221 1225889998877755
Q ss_pred EE
Q 044435 337 SF 338 (378)
Q Consensus 337 ~v 338 (378)
..
T Consensus 282 ~~ 283 (329)
T 3fvz_A 282 DV 283 (329)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 230
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=60.07 E-value=71 Score=28.81 Aligned_cols=69 Identities=7% Similarity=-0.058 Sum_probs=41.9
Q ss_pred CCe-EEEEEcCCCcEEEEEeccCCCCcceEE--EEEecCCCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCC
Q 044435 264 KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSK--LFTMNENGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMH 333 (378)
Q Consensus 264 ~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~--~~~i~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~ 333 (378)
+|. +.+....++.+.+|.+..... ..+.. ...+........-+.+++ ++.+++....++.+..||+++.
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCB-GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCC-CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 344 666666677999999986332 22332 122222111255566776 5565556667778999999976
No 231
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=59.40 E-value=89 Score=27.16 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=33.5
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCcee--eeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEec
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETF--YSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMK 283 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~--~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~ 283 (378)
+|.|||...... .|..+++..... ..+. ...... . .++.. +|.||+.......+.+..++
T Consensus 46 ~~~lyw~D~~~~------~I~r~~~~g~~~~~~~~~--~~l~~p--~---glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 46 HGLIYWSDVSEE------AIKRTEFNKTESVQNVVV--SGLLSP--D---GLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp GTEEEEEETTTT------EEEEEETTSSSCCCEEEE--ECCSCC--C---EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEECCCC------cEEEEEccCCCceEEEEc--CCCCCc--c---EEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 589999876543 799999876521 1111 111110 1 34443 67888877655555554443
No 232
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=58.78 E-value=1.3e+02 Score=28.78 Aligned_cols=108 Identities=4% Similarity=-0.120 Sum_probs=61.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK 288 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~ 288 (378)
++.+|...... ..|..+|..+.+.. .|+...... .+..+ +|+..++...++.+.+|-+..
T Consensus 166 ~~~~~V~~~~~------~~V~viD~~t~~v~~~i~~g~~p~--------~v~~SpDGr~lyv~~~dg~V~viD~~~---- 227 (567)
T 1qks_A 166 ENLFSVTLRDA------GQIALIDGSTYEIKTVLDTGYAVH--------ISRLSASGRYLFVIGRDGKVNMIDLWM---- 227 (567)
T ss_dssp GGEEEEEETTT------TEEEEEETTTCCEEEEEECSSCEE--------EEEECTTSCEEEEEETTSEEEEEETTS----
T ss_pred CceEEEEeCCC------CeEEEEECCCCeEEEEEeCCCCcc--------ceEECCCCCEEEEEcCCCeEEEEECCC----
Confidence 44555554433 38999999886543 444432211 22333 565444444445666665531
Q ss_pred cceEEEEEecC-CCceeEEEEEE----eCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 289 DSWSKLFTMNE-NGYRVIPLAFS----SRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 289 ~~W~~~~~i~~-~~~~~~~~~~~----~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
.+-..+.+|+. .. .+-++++ ++|+.+++... ...+.++|..|.+..+.
T Consensus 228 ~t~~~v~~i~~G~~--P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 228 KEPTTVAEIKIGSE--ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp SSCCEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCCcEeEEEecCCC--CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 01234556665 33 4556777 48986666543 45699999988775543
No 233
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=58.64 E-value=81 Score=26.42 Aligned_cols=137 Identities=7% Similarity=-0.033 Sum_probs=71.8
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN 250 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 250 (378)
..+.+++..++.-...-.. .. .. ..-.++. -+|.....+..+. .|..+|+.+++...... .+..
T Consensus 45 ~tV~iWd~~tg~~~~~~~~---~~--~~--~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~-~h~~ 110 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQM---EQ--PG--EYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT-SHSA 110 (318)
T ss_dssp TEEEEEETTTCCEEEEEEC---CS--TT--CCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEE-CCSS
T ss_pred CEEEEEECCCCCEEEEEEe---cC--CC--CeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEec-Cccc
Confidence 4688999888765432111 00 00 0001222 2566555555543 78999998876543311 1111
Q ss_pred CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
.. .....++.+.+....++.+.+|..... ...+..+.........+.+..+|..++....++.+..||+
T Consensus 111 -----~~-~~~~~~~~~l~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 111 -----RV-GSLSWNSYILSSGSRSGHIHHHDVRVA-----EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp -----CE-EEEEEETTEEEEEETTSEEEEEETTSS-----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred -----eE-EEeecCCCEEEEEecCCceEeeecCCC-----ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 11 222335666555555567777765542 2222323221112445566667886777777777889998
Q ss_pred CCCe
Q 044435 331 DMHR 334 (378)
Q Consensus 331 ~~~~ 334 (378)
++++
T Consensus 180 ~~~~ 183 (318)
T 4ggc_A 180 APGE 183 (318)
T ss_dssp SCBT
T ss_pred CCCc
Confidence 8754
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=57.33 E-value=92 Score=26.69 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=34.6
Q ss_pred eEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEecc
Q 044435 228 DLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKE 284 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~ 284 (378)
..|..||...+....+..|...... ....+...+|+|++.......+.+..++.
T Consensus 260 ~~v~~~d~~G~~~~~~~~~~g~~~~---~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 260 PKGIKFDEFGNILEVIPLPPPFAGE---HFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEECTTSCEEEEEECCTTTTTS---CCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred cEEEEECCCCCEEEEEECCCCCccc---cceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 4799999987777778887643211 11134556899999876666666665553
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=55.18 E-value=1.6e+02 Score=28.78 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=62.7
Q ss_pred ccceEEEeecCCcEEEEcCcccceeec--CCCCCCCC---CCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 106 CNGLLALKNYPKGIILLNPLTKKHRVL--PKFYRDLH---GDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 106 ~~GLl~l~~~~~~~~V~NP~t~~~~~L--P~~~~~~~---~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
.+|.|.+......++.+|+.|++.+.- +..+.... .......+..++. . +|+... ....+..++.
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~---~-~v~v~~------~dg~l~alD~ 145 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK---G-KVYVGA------WDGRLIALDA 145 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET---T-EEEEEC------TTSEEEEEET
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEEC---C-EEEEEc------CCCEEEEEEC
Confidence 477777776666788899999874432 22111000 0000011222322 1 232221 1245777887
Q ss_pred CCC--cEEecCc-ccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee
Q 044435 181 KVN--LWRRIKN-IKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM 243 (378)
Q Consensus 181 ~~~--~W~~~~~-~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i 243 (378)
.++ .|+.-.. . +. ........++..+|.+|......+ ......|.+||..++ .|+.-
T Consensus 146 ~tG~~~W~~~~~~~---~~--~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 146 ATGKEVWHQNTFEG---QK--GSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTCCEEEEEETTTT---CC--SSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEEeeecCCcC---cC--cCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEec
Confidence 765 6887533 1 11 111233457788999988664321 001148999998765 45543
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=54.72 E-value=1.6e+02 Score=28.68 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=33.7
Q ss_pred eEEEEEEcCCC--cEEecCcccCCCcccc----ccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeee
Q 044435 173 IEATVYGLKVN--LWRRIKNIKNFPYSWA----DHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYS 242 (378)
Q Consensus 173 ~~~~vyss~~~--~W~~~~~~~~~p~~~~----~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~ 242 (378)
..+..++..++ .|+.-... +.... ........++.+|.+|.....+ .|.++|..++ .|+.
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-------~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEV---AKVKARTSCCDAVNRGVALWGDKVYVGTLDG-------RLIALDAKTGKAIWSQ 143 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCC---CGGGGGGCTTCSCCCCCEEEBTEEEEECTTS-------EEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCChhceEECCCC---CccccccccccCCccceEEECCEEEEEcCCC-------EEEEEECCCCCEeeee
Confidence 35666776654 68875332 11000 0111233566788998865433 7999998665 4554
No 237
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=54.64 E-value=1.5e+02 Score=28.26 Aligned_cols=97 Identities=15% Similarity=0.052 Sum_probs=59.2
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-------CC
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-------EN 300 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-------~~ 300 (378)
.|..+|..+.+.... +..+.. .+..+... +|++.+....++.+.||.+.... - ...+. ..
T Consensus 171 ~v~lwd~~~~~~~~~-l~~H~~-----~V~~v~fspdg~~las~s~D~~i~lwd~~~g~----~--~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 171 TVAIFEGPPFKFKST-FGEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT----K--TGVFEDDSLKNVAH 238 (611)
T ss_dssp CEEEEETTTBEEEEE-ECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCC----E--EEECBCTTSSSCSS
T ss_pred eEEEEECCCCeEeee-eccccC-----ceEEEEECCCCCEEEEEECCCcEEEEECCCCc----E--eeeecccccccccc
Confidence 688888776554322 222211 11023333 68887777777899999876421 1 12221 11
Q ss_pred CceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 301 GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 301 ~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
.....-+++.++|..++-...++.+..+|+++.+...
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 1125567778899977777778889999999877543
No 238
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=54.56 E-value=1.1e+02 Score=26.62 Aligned_cols=207 Identities=10% Similarity=-0.026 Sum_probs=99.9
Q ss_pred ccceEEEee-cCCcEEEEcCccccee-ecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 106 CNGLLALKN-YPKGIILLNPLTKKHR-VLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
.+|.|...+ ....+..+++.++... .+.... .....++++|...+...+.- .....+++++....
T Consensus 45 ~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~------l~~p~glavd~~~g~ly~~d-------~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 45 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG------LLSPDGLACDWLGEKLYWTD-------SETNRIEVSNLDGS 111 (318)
T ss_dssp GGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC------CSCCCEEEEETTTTEEEEEE-------TTTTEEEEEETTSC
T ss_pred CCCEEEEEECCCCcEEEEEccCCCceEEEEcCC------CCCccEEEEEcCCCeEEEEE-------CCCCEEEEEECCCC
Confidence 356665555 3455666776655211 111000 11123677776555433321 12346777777543
Q ss_pred cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435 184 LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l 260 (378)
.=+.+... . .....++.+ +|.|||...... ..|..+|+....-..+-- .... ....|
T Consensus 112 ~~~~l~~~-------~--~~~P~giavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~~~-~~l~-----~Pngl 171 (318)
T 3sov_A 112 LRKVLFWQ-------E--LDQPRAIALDPSSGFMYWTDWGEV-----PKIERAGMDGSSRFIIIN-SEIY-----WPNGL 171 (318)
T ss_dssp SCEEEECS-------S--CSSEEEEEEEGGGTEEEEEECSSS-----CEEEEEETTSCSCEEEEC-SSCS-----CEEEE
T ss_pred cEEEEEeC-------C--CCCccEEEEeCCCCEEEEEecCCC-----CEEEEEEcCCCCeEEEEE-CCCC-----CccEE
Confidence 22222111 0 111234444 589999874322 379999987544333311 1111 11145
Q ss_pred EEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCe-EE
Q 044435 261 YVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHR-VE 336 (378)
Q Consensus 261 ~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~-~~ 336 (378)
+.. +|+||++.....++...-++ +... ..+ +.... ..|.++.-+++.+++... ..++..+|..+++ .+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~d--G~~~--~~~--~~~~~--~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLD--GTNR--QAV--VKGSL--PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT--SCSC--EEE--ECSCC--SCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EEeccCCEEEEEECCCCEEEEEcCC--CCce--EEE--ecCCC--CCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 555 68999988655554443333 2211 111 11122 345555444555666543 4569999996555 44
Q ss_pred EEeEeC--CcceEEeeecc
Q 044435 337 SFLVKG--PSDVHVCVDTL 353 (378)
Q Consensus 337 ~v~~~~--~~~~~~y~~sl 353 (378)
.|.... +..+.+|.++.
T Consensus 244 ~i~~~~~~P~~i~v~~~~~ 262 (318)
T 3sov_A 244 EIHSDIFSPMDIHAFSQQR 262 (318)
T ss_dssp EEECCCSSCCCEEEECGGG
T ss_pred EEeCCCCCCcEEEEecccc
Confidence 443221 23566666554
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=53.68 E-value=1.7e+02 Score=28.56 Aligned_cols=115 Identities=11% Similarity=0.026 Sum_probs=62.7
Q ss_pred eCCeEEEEeecCCCcccceEEEEEEcCCc---eeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCC
Q 044435 210 VNGALHWLANQNQDEMINDLILAFDLNIE---TFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYG 286 (378)
Q Consensus 210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~---~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~ 286 (378)
.++.+|+++..+.. ...|...|+.+. .|+.+ .|.... .. .....++.|.+....++.-.|++++-.+
T Consensus 290 ~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l-~~~~~~-----~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 290 KGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDL-IPERQQ-----VL-TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp ETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEE-ECCCSS-----CE-EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred cCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEE-ecCCCC-----EE-EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 46778888765421 258999998763 35654 222211 11 2344466777766666533444444322
Q ss_pred CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEe
Q 044435 287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFL 339 (378)
Q Consensus 287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~ 339 (378)
.+. ..+.. .......+...++++.+++...+ ..++.||+++++.+.+.
T Consensus 360 ---~~~--~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 360 ---KRV--REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ---CEE--EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ---Cee--EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 232 33443 22112222333466656665433 46999999999888774
No 240
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=53.00 E-value=1.1e+02 Score=26.33 Aligned_cols=211 Identities=11% Similarity=0.012 Sum_probs=101.9
Q ss_pred eeeccceEEEee-cCCcEEEEcCcc----cceee-cCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEE
Q 044435 103 IGSCNGLLALKN-YPKGIILLNPLT----KKHRV-LPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEAT 176 (378)
Q Consensus 103 ~~s~~GLl~l~~-~~~~~~V~NP~t----~~~~~-LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 176 (378)
.+..+|.|...+ ....+..+++.+ ..... ++... ....++++|...+...+.- .....++
T Consensus 37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~-------~~p~glavd~~~~~ly~~d-------~~~~~I~ 102 (316)
T 1ijq_A 37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------QAPDGLAVDWIHSNIYWTD-------SVLGTVS 102 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-------SCCCEEEEETTTTEEEEEE-------TTTTEEE
T ss_pred EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-------CCcCEEEEeecCCeEEEEE-------CCCCEEE
Confidence 344567776665 456788888876 22222 22110 1123677776555433321 1234567
Q ss_pred EEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCC
Q 044435 177 VYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGG 253 (378)
Q Consensus 177 vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~ 253 (378)
+++.....=+.+... . .....++.+ +|.|||...... ..|..+|+....-..+-.. ...
T Consensus 103 ~~~~~g~~~~~~~~~-------~--~~~P~~iavdp~~g~ly~~d~~~~-----~~I~~~~~dG~~~~~~~~~-~~~--- 164 (316)
T 1ijq_A 103 VADTKGVKRKTLFRE-------N--GSKPRAIVVDPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTE-NIQ--- 164 (316)
T ss_dssp EEETTSSSEEEEEEC-------T--TCCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCCEEEEECS-SCS---
T ss_pred EEeCCCCceEEEEEC-------C--CCCcceEEeCCCCCEEEEEccCCC-----CeEEEEcCCCCCeEEEEEC-CCC---
Confidence 777764332222111 0 011224444 689999864321 3799999876544433111 111
Q ss_pred CcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEEC
Q 044435 254 GGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHL 330 (378)
Q Consensus 254 ~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl 330 (378)
....|+.. +|+||++.....++...-++ +... ..+....... ..|.++.-+++.+++... ..++..+|.
T Consensus 165 --~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~--~~~~~~~~~~--~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 165 --WPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNR--KTILEDEKRL--AHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp --CEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSC--EEEEECTTTT--SSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred --CceEEEEeccCCEEEEEECCCCeEEEEecC--CCce--EEEeecCCcc--CCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 11145554 68999988665554443333 2211 1111111122 234444333454666554 456999998
Q ss_pred CCCe-EEEEeEe-C-CcceEEeeecc
Q 044435 331 DMHR-VESFLVK-G-PSDVHVCVDTL 353 (378)
Q Consensus 331 ~~~~-~~~v~~~-~-~~~~~~y~~sl 353 (378)
.+++ .+.+... . +..+.+|.++.
T Consensus 237 ~~g~~~~~i~~~~~~p~~i~v~~~~~ 262 (316)
T 1ijq_A 237 LTGSDVNLLAENLLSPEDMVLFHNLT 262 (316)
T ss_dssp TTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred CCCcceEEEecCCCCceEEEEecccc
Confidence 6655 4444321 1 23566666554
No 241
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=52.65 E-value=1.1e+02 Score=26.01 Aligned_cols=195 Identities=9% Similarity=0.002 Sum_probs=92.9
Q ss_pred EEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435 110 LALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI 188 (378)
Q Consensus 110 l~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~ 188 (378)
|++.+ ....+..++| +++...+.... ....++.+|+... ++... .....+.+|+.. ++.+.+
T Consensus 59 l~~~d~~~~~i~~~~~-~g~~~~~~~~~-------~~~~gl~~d~dG~---l~v~~-----~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE-DGTVDVLLDAT-------AFTNGNAVDAQQR---LVHCE-----HGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEETTTTEEEEEET-TSCEEEEEESC-------SCEEEEEECTTSC---EEEEE-----TTTTEEEEECTT-SCEEEE
T ss_pred EEEEECCCCEEEEEeC-CCCEEEEeCCC-------CccceeeECCCCC---EEEEE-----CCCCEEEEECCC-CCEEEE
Confidence 44443 4567888888 56544443221 1234666776532 22211 112356667765 555554
Q ss_pred CcccCCCccccccccCCccee--eCCeEEEEe----ecC-------CCcccceEEEEEEcCCceeeeecCCCCCCCCCCc
Q 044435 189 KNIKNFPYSWADHSYGGNGAF--VNGALHWLA----NQN-------QDEMINDLILAFDLNIETFYSMPMPGFGNEGGGG 255 (378)
Q Consensus 189 ~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~----~~~-------~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~ 255 (378)
... .. .........+. -+|.+|+.. ... ........|..+|..++++..+. . ...
T Consensus 122 ~~~---~~--~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~---- 189 (305)
T 3dr2_A 122 VGR---YA--GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--LDH---- 189 (305)
T ss_dssp ECE---ET--TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--ESS----
T ss_pred Eec---cC--CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--CCC----
Confidence 322 11 11111111222 368877742 100 00011247999999887776653 1 110
Q ss_pred ccceEEEE-CCe-EEEEEcCC-----CcEEEEEeccCCCCcceEEEEEe-cCCCceeEEEEEEeCCCEEEEEeCCCeEEE
Q 044435 256 ELSGVYVL-KGC-LSLLCKYS-----EPWDLWVMKEYGVKDSWSKLFTM-NENGYRVIPLAFSSRGDKVLFQKNSKDHCW 327 (378)
Q Consensus 256 ~~~~l~~~-~G~-L~~~~~~~-----~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 327 (378)
-. .++.. +|+ |+++.... ..+.+|.++. . .......+ ........-+.+..+|. +++... ..+..
T Consensus 190 p~-gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~--~--~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~ 262 (305)
T 3dr2_A 190 PN-GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD--G--ALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCV 262 (305)
T ss_dssp EE-EEEECTTSSEEEEEECCC---CCCEEEEEEEET--T--EEEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEE
T ss_pred Cc-ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC--C--CccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEE
Confidence 01 33443 564 77766542 2444444432 1 12211111 11111122356666787 666653 45999
Q ss_pred EECCCCeEEEEeE
Q 044435 328 YHLDMHRVESFLV 340 (378)
Q Consensus 328 ydl~~~~~~~v~~ 340 (378)
||++++....+..
T Consensus 263 ~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 263 FDSDGQLLGHIPT 275 (305)
T ss_dssp ECTTSCEEEEEEC
T ss_pred ECCCCCEEEEEEC
Confidence 9998888887754
No 242
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=52.53 E-value=71 Score=28.64 Aligned_cols=68 Identities=4% Similarity=0.011 Sum_probs=45.5
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~ 337 (378)
+|.+.++...++.+.+|-+.... .+..+.. ......-+++.++|..++....++.+..||+++++...
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 47777777777799999887521 1222221 11125567777888877778778889999999877543
No 243
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=52.16 E-value=1.3e+02 Score=26.79 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=63.7
Q ss_pred eEEEEeecCCCcccceEEEEEEcCCcee-----eeecCCCCCCCCC-----CcccceEEEE-CCeEEEEEcCCCcEEEEE
Q 044435 213 ALHWLANQNQDEMINDLILAFDLNIETF-----YSMPMPGFGNEGG-----GGELSGVYVL-KGCLSLLCKYSEPWDLWV 281 (378)
Q Consensus 213 ~lyw~~~~~~~~~~~~~i~~fD~~~~~~-----~~i~lP~~~~~~~-----~~~~~~l~~~-~G~L~~~~~~~~~l~iW~ 281 (378)
.+...+..++ .|..+|+.+.+. ..+..+....... ...+..+... +|++.+.... +.+.||.
T Consensus 240 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 240 NTFVYSSSKG------TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD 312 (447)
T ss_dssp TEEEEEETTS------CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred cEEEEEeCCC------eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence 4555554442 699999987664 3343332210000 0011023333 6777666666 8999999
Q ss_pred eccCCC-CcceEEEEEecC-CC----------ceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435 282 MKEYGV-KDSWSKLFTMNE-NG----------YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 282 l~~~~~-~~~W~~~~~i~~-~~----------~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~ 339 (378)
+...+. -..+.. + -.. .. .....+++.++|..++....++.+..||+++++...+.
T Consensus 313 ~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 313 LNMENRPVETYQV-H-EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE 380 (447)
T ss_dssp TTCCSSCSCCEES-C-GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred CCCCccccceeec-c-ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee
Confidence 875221 111110 0 000 00 00112777889997777777788999999999876653
No 244
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=51.87 E-value=29 Score=25.61 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=28.8
Q ss_pred CcEEEEcCccc-ceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 117 KGIILLNPLTK-KHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 117 ~~~~V~NP~t~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
..+++.||.|+ +|....... ..+.+-+|+..+.|+|+++.
T Consensus 11 A~V~~~D~~tk~~W~p~g~~~--------~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKHA--------VTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCSSC--------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCCc--------eEEEEEEcCCCCEEEEEEcc
Confidence 35788899996 996544321 34567788888889999854
No 245
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=51.71 E-value=1.4e+02 Score=26.99 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=63.6
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCC---C---------------CCCCCcccceEEEE-CCeEEEE
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGF---G---------------NEGGGGELSGVYVL-KGCLSLL 270 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~---~---------------~~~~~~~~~~l~~~-~G~L~~~ 270 (378)
+|.+...+..+. .|..+|+.+.+. ..+..... . .......+..+... +|+..++
T Consensus 251 d~~~l~s~~~d~------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 251 KDYLLLSAGGDD------KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp STTEEEEEESSS------EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 677666665543 799999987654 22332210 0 00000111122332 4666555
Q ss_pred Ec-CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC---------eEEEEECCCCeEEEE
Q 044435 271 CK-YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK---------DHCWYHLDMHRVESF 338 (378)
Q Consensus 271 ~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~---------~~~~ydl~~~~~~~v 338 (378)
.. .++.+.||.+.+.. ...+..+..+.. .. ..-+++.++ .+++...... +++.++.++++++..
T Consensus 325 ~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~~~--v~~~~~~~~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 399 (450)
T 2vdu_B 325 FVEATKCIIILEMSEKQ-KGDLALKQIITFPYN--VISLSAHND-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVN 399 (450)
T ss_dssp EETTCSEEEEEEECSSS-TTCEEEEEEEECSSC--EEEEEEETT-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEEEC
T ss_pred EECCCCeEEEEEeccCC-CCceeeccEeccCCc--eEEEEecCC-cEEEEEecccCCCCCCcceEEEEEEcCCCeEEEc
Confidence 55 55699999992211 234666666665 32 445666663 3333332221 688889999998633
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=51.54 E-value=1.1e+02 Score=25.93 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=84.2
Q ss_pred eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCccee-eCCeEEEEeecCCCc
Q 044435 146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF-VNGALHWLANQNQDE 224 (378)
Q Consensus 146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~-~~G~lyw~~~~~~~~ 224 (378)
.-|+.+++. + .+.+. .+......+.+++..+++=.. .. +. ... ....++. .++.+|......+
T Consensus 23 ~~Gl~~~~d-g---~Lyvs--tg~~~~s~v~~iD~~tg~v~~--~i---~l--~~~-~fgeGi~~~g~~lyv~t~~~~-- 86 (266)
T 2iwa_A 23 TQGLVYAEN-D---TLFES--TGLYGRSSVRQVALQTGKVEN--IH---KM--DDS-YFGEGLTLLNEKLYQVVWLKN-- 86 (266)
T ss_dssp EEEEEECST-T---EEEEE--ECSTTTCEEEEEETTTCCEEE--EE---EC--CTT-CCEEEEEEETTEEEEEETTCS--
T ss_pred cccEEEeCC-C---eEEEE--CCCCCCCEEEEEECCCCCEEE--EE---ec--CCC-cceEEEEEeCCEEEEEEecCC--
Confidence 347777764 2 12222 111235689999998875322 11 11 111 1112333 3568888876553
Q ss_pred ccceEEEEEEcCCce-eeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC-
Q 044435 225 MINDLILAFDLNIET-FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG- 301 (378)
Q Consensus 225 ~~~~~i~~fD~~~~~-~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~- 301 (378)
.+.++|..+.+ -..|+.+ ... .. .+...+++|++.. ... .|++++.. +-.....|.. ..
T Consensus 87 ----~v~viD~~t~~v~~~i~~g-~~~-----g~-glt~Dg~~l~vs~-gs~--~l~viD~~----t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 87 ----IGFIYDRRTLSNIKNFTHQ-MKD-----GW-GLATDGKILYGSD-GTS--ILYEIDPH----TFKLIKKHNVKYNG 148 (266)
T ss_dssp ----EEEEEETTTTEEEEEEECC-SSS-----CC-EEEECSSSEEEEC-SSS--EEEEECTT----TCCEEEEEECEETT
T ss_pred ----EEEEEECCCCcEEEEEECC-CCC-----eE-EEEECCCEEEEEC-CCC--eEEEEECC----CCcEEEEEEECCCC
Confidence 79999998754 3455555 111 11 3444456777655 222 56677752 3444556654 21
Q ss_pred -c--eeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeE-EEEe
Q 044435 302 -Y--RVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRV-ESFL 339 (378)
Q Consensus 302 -~--~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~-~~v~ 339 (378)
. ...-+.+. +|. ++.... ...+...|++++++ ..|.
T Consensus 149 ~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 149 HRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred cccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEE
Confidence 0 12223333 565 666653 45699999999885 4444
No 247
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=50.67 E-value=1.4e+02 Score=26.62 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=61.2
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCC--ceeeeecCCC-CCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccC
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNI--ETFYSMPMPG-FGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEY 285 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~--~~~~~i~lP~-~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~ 285 (378)
+|.+...+ .+ ..|..+|+.+ ..+..+.+.+ ..... ...+..+... +| .+.+....++.+.+|.+...
T Consensus 188 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 188 DYETYLSA-DD------LRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp TSSEEEEE-CS------SEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEEe-CC------CeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 56655555 33 3799999983 3344343322 11111 1112133333 45 77777777789999998763
Q ss_pred CCCcceEEEEEecC-CC-----------ceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435 286 GVKDSWSKLFTMNE-NG-----------YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332 (378)
Q Consensus 286 ~~~~~W~~~~~i~~-~~-----------~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~ 332 (378)
.....- ...+.. .. ....-+.+.++|..++.... +.+..||+++
T Consensus 260 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 260 ALCDRH--SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp SSSCTT--CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred ccccce--eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 210000 112222 11 13566777888986666666 7799999986
No 248
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=48.55 E-value=2e+02 Score=27.88 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=63.3
Q ss_pred CCcEEEEcCccccee-ecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCC
Q 044435 116 PKGIILLNPLTKKHR-VLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNF 194 (378)
Q Consensus 116 ~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 194 (378)
...+...+..+.... .+|-.. .....++.||+..+...+.-. ....+..++......+.+-..
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~------~~~~~~l~~d~~~~~lywtD~-------~~~~I~r~~~~g~~~~~v~~~--- 77 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTG------VKEASALDFDVTDNRIYWTDI-------SLKTISRAFMNGSALEHVVEF--- 77 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCS------CSCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEECS---
T ss_pred CCcEEEEECCCCCcceEEEcCC------CCceEEEEEECCCCEEEEEEC-------CCCeEEEEECCCCCcEEEEeC---
Confidence 344556666554432 233211 123568888887664333221 123455666655444433221
Q ss_pred CccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEE
Q 044435 195 PYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSL 269 (378)
Q Consensus 195 p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~ 269 (378)
+. ....++.+ +|.|||..... ..|.++|+....-..+-- .... .+..|+.. +|.||.
T Consensus 78 ----g~--~~P~GlAvD~~~~~LY~tD~~~------~~I~v~~~dG~~~~~l~~-~~l~-----~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 78 ----GL--DYPEGMAVDWLGKNLYWADTGT------NRIEVSKLDGQHRQVLVW-KDLD-----SPRALALDPAEGFMYW 139 (628)
T ss_dssp ----SC--SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSTTCEEEEC-SSCC-----CEEEEEEETTTTEEEE
T ss_pred ----CC--CCcceEEEEeCCCEEEEEECCC------CEEEEEecCCCcEEEEEe-CCCC-----CcccEEEccCCCeEEE
Confidence 11 12235555 59999986544 389999987654333311 1111 11145554 688888
Q ss_pred EEcC
Q 044435 270 LCKY 273 (378)
Q Consensus 270 ~~~~ 273 (378)
....
T Consensus 140 tD~g 143 (628)
T 4a0p_A 140 TEWG 143 (628)
T ss_dssp EECS
T ss_pred eCCC
Confidence 7743
No 249
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=48.53 E-value=2.3e+02 Score=28.71 Aligned_cols=187 Identities=9% Similarity=0.027 Sum_probs=95.8
Q ss_pred EEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCc
Q 044435 111 ALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKN 190 (378)
Q Consensus 111 ~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 190 (378)
.....+..+.|||..+.+......- ......+.|.+ +. .++.... ...+.+++..++.-...-.
T Consensus 33 Asgs~Dg~I~lw~~~~~~~~~~~~~-------~~~V~~l~fsp--g~-~L~S~s~------D~~v~lWd~~~~~~~~~~~ 96 (902)
T 2oaj_A 33 AIATVTGEVHIYGQQQVEVVIKLED-------RSAIKEMRFVK--GI-YLVVINA------KDTVYVLSLYSQKVLTTVF 96 (902)
T ss_dssp EEEETTSEEEEECSTTCEEEEECSS-------CCCEEEEEEET--TT-EEEEEET------TCEEEEEETTTCSEEEEEE
T ss_pred EEEeCCCEEEEEeCCCcEEEEEcCC-------CCCEEEEEEcC--CC-EEEEEEC------cCeEEEEECCCCcEEEEEc
Confidence 3334556678888777665432211 11344677777 44 3433331 3568888887653211100
Q ss_pred ccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCC------CCCCCCCcccceEEE
Q 044435 191 IKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPG------FGNEGGGGELSGVYV 262 (378)
Q Consensus 191 ~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~------~~~~~~~~~~~~l~~ 262 (378)
. +. .. .++. -+|.....+..++ .|..+|+.+++......|. ...... ..+..+..
T Consensus 97 ~---~~--~V-----~~v~~sp~g~~l~sgs~dg------~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-~~V~sl~~ 159 (902)
T 2oaj_A 97 V---PG--KI-----TSIDTDASLDWMLIGLQNG------SMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-SPIVSIQW 159 (902)
T ss_dssp C---SS--CE-----EEEECCTTCSEEEEEETTS------CEEEEETTTTEEEEEEECCHHHHHTCSSSCC-CCCCEEEE
T ss_pred C---CC--CE-----EEEEECCCCCEEEEEcCCC------cEEEEECCCCccccceeccccccccccccCC-CCeEEEEE
Confidence 0 00 00 0111 1344444444432 6899999887654322211 000000 11113444
Q ss_pred E--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCC------------------CceeEEEEEEeCCCEEEEEeCC
Q 044435 263 L--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNEN------------------GYRVIPLAFSSRGDKVLFQKNS 322 (378)
Q Consensus 263 ~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~------------------~~~~~~~~~~~~g~~v~~~~~~ 322 (378)
. ++.+.++...++.+ +|-++... - ...+... .....-+++.++|..++-...+
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~~~----~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVENE----I--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTTTE----E--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCCEEEEEeCCCcE-EEECCCCc----e--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 4 23566666566688 99876521 1 1112110 1225567778899977777778
Q ss_pred CeEEEEECCCCeEEE
Q 044435 323 KDHCWYHLDMHRVES 337 (378)
Q Consensus 323 ~~~~~ydl~~~~~~~ 337 (378)
+.+..||+++++...
T Consensus 233 g~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 233 NSLVFWDANSGHMIM 247 (902)
T ss_dssp CCEEEEETTTCCEEE
T ss_pred CeEEEEECCCCcEEE
Confidence 889999998876543
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=48.34 E-value=1.3e+02 Score=25.63 Aligned_cols=201 Identities=10% Similarity=-0.014 Sum_probs=94.9
Q ss_pred ccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435 106 CNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL 184 (378)
Q Consensus 106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~ 184 (378)
.+|-|.+.+ ...+++++||.++....++... ...++.+++..+ +.| +-. ......+..|+..++.
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~--------~p~gia~~~dG~-l~v-ad~----~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVEG--------KVSGLAFTSNGD-LVA-TGW----NADSIPVVSLVKSDGT 106 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEEECSS--------EEEEEEECTTSC-EEE-EEE----CTTSCEEEEEECTTSC
T ss_pred CCCCEEEEeCCCCeEEEECCCCceEEEEeCCC--------CceeEEEcCCCc-EEE-Eec----cCCcceEEEEcCCCCe
Confidence 367666665 5667889999876443332211 233666766543 322 211 1112346667777777
Q ss_pred EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee---c-CCCCCCCCCCcccceE
Q 044435 185 WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM---P-MPGFGNEGGGGELSGV 260 (378)
Q Consensus 185 W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~-lP~~~~~~~~~~~~~l 260 (378)
.+.+... +. .. ......+..++.+|...... ..|..+|..+...+.. . +..............+
T Consensus 107 ~~~~~~~---~~--~~-~~~g~~~~~~~~~~v~d~~~------g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 107 VETLLTL---PD--AI-FLNGITPLSDTQYLTADSYR------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EEEEEEC---TT--CS-CEEEEEESSSSEEEEEETTT------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred EEEEEeC---CC--cc-ccCcccccCCCcEEEEECCC------CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 6655433 21 11 00000112345556543222 3799999876432211 0 0000000000111134
Q ss_pred EEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435 261 YVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 261 ~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~~~v 338 (378)
...++.||+......++.++.++..+.-.......... ...-+++.++|. +++.. ...++..||++. +...+
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~----~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G-~~~~~ 247 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT----NIDDFAFDVEGN-LYGATHIYNSVVRIAPDR-STTII 247 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC----CCSSEEEBTTCC-EEEECBTTCCEEEECTTC-CEEEE
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC----CCCCeEECCCCC-EEEEeCCCCeEEEECCCC-CEEEE
Confidence 33455788888765566555554312111111111111 122367777887 55554 345699999974 44433
No 251
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=47.65 E-value=1.7e+02 Score=26.76 Aligned_cols=112 Identities=10% Similarity=0.149 Sum_probs=58.5
Q ss_pred CcceeeC-----CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCC--c
Q 044435 205 GNGAFVN-----GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE--P 276 (378)
Q Consensus 205 ~~~v~~~-----G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~--~ 276 (378)
..++.++ |.|||.... ..|..+|+.+++...+..+. ..+..++.. +|.|+++..... .
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-------~~I~~id~~~g~v~~~~~~~-------~~P~giavd~dG~lyVad~~~~~~~ 206 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-------DAFRHVDFVNQYVDIKTTNI-------GQCADVNFTLNGDMVVVDDQSSDTN 206 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-------SCEEEEETTTTEEEEECCCC-------SCEEEEEECTTCCEEEEECCSCTTS
T ss_pred CceEEEccccCCCEEEEEeCC-------CCEEEEECCCCEEEEeecCC-------CCccEEEECCCCCEEEEcCCCCccc
Confidence 3467776 899998654 26999999888887763211 111134443 677888775432 2
Q ss_pred EEEEEeccCCCCcceEEEEEecCCCceeEEEEEEe-CCCEEEEEe-CCCeEEEEECCCCeE
Q 044435 277 WDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSS-RGDKVLFQK-NSKDHCWYHLDMHRV 335 (378)
Q Consensus 277 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~~v~~~~-~~~~~~~ydl~~~~~ 335 (378)
-.+..+...+ .|.....+.. +....-+++.+ +|. +++.. ...+++.||+++++.
T Consensus 207 ~gv~~~~~~~---~~~~~~~~~~-~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 207 TGIYLFTRAS---GFTERLSLCN-ARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp EEEEEECGGG---TTCCEEEEEE-CSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCE
T ss_pred ceEEEEECCC---Ceeccccccc-cCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeE
Confidence 3333333221 1221111111 10122245555 555 55544 334577888876665
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=47.21 E-value=2e+02 Score=27.64 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=60.6
Q ss_pred cceEEEeec-CCcEEEEcC-ccccee--ecCCCCCCCC---CCCCceeEEeee--cCCCCeEEEEEEEecCCCcceEEEE
Q 044435 107 NGLLALKNY-PKGIILLNP-LTKKHR--VLPKFYRDLH---GDKPSLHGFGYD--VGSDDYKLVRIHVFKSPVYHIEATV 177 (378)
Q Consensus 107 ~GLl~l~~~-~~~~~V~NP-~t~~~~--~LP~~~~~~~---~~~~~~~~~g~d--~~~~~ykvv~~~~~~~~~~~~~~~v 177 (378)
+|.|.+... ...++-+|+ .|++.+ .-+....... ......-+..+. .....-+|+... ....+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t------~dg~l~A 135 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ------LDGNVAA 135 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC------TTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc------CCCEEEE
Confidence 677766655 567888899 887744 3222211000 000011123331 111111132221 1235677
Q ss_pred EEcCCC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee
Q 044435 178 YGLKVN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM 243 (378)
Q Consensus 178 yss~~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i 243 (378)
++..++ .|+.-... +. ........++..+|.+|.-....+ ......|.+||..++ .|+.-
T Consensus 136 lDa~TG~~~W~~~~~~---~~--~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 136 LNAETGETVWKVENSD---IK--VGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EETTTCCEEEEEECCC---GG--GTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEeecCCC---CC--ccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEc
Confidence 787665 69864321 11 111233457788999987543110 001138999998765 45543
No 253
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=47.10 E-value=1.4e+02 Score=25.70 Aligned_cols=203 Identities=8% Similarity=-0.062 Sum_probs=97.3
Q ss_pred eeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435 104 GSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV 182 (378)
Q Consensus 104 ~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~ 182 (378)
+..+|.+.+.+ ....++++||.+++...+.... ...++.+++.. .+-| . . ...+.+|+..+
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~--------~v~~i~~~~dg-~l~v-~-~-------~~gl~~~d~~~ 118 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKTVHALPF--------MGSALAKISDS-KQLI-A-S-------DDGLFLRDTAT 118 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS--------CEEEEEEEETT-EEEE-E-E-------TTEEEEEETTT
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEEEEECCC--------cceEEEEeCCC-eEEE-E-E-------CCCEEEEECCC
Confidence 33345555554 4567889999998766553211 13355666543 2222 2 1 12478888888
Q ss_pred CcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435 183 NLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV 260 (378)
Q Consensus 183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l 260 (378)
+..+.+... +. .........+. -+|.+|+.............|..+| +++...+. + ... ... .+
T Consensus 119 g~~~~~~~~---~~--~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~-~~~----~~~-~i 184 (326)
T 2ghs_A 119 GVLTLHAEL---ES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-A-DIS----IPN-SI 184 (326)
T ss_dssp CCEEEEECS---ST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-E-EES----SEE-EE
T ss_pred CcEEEEeeC---CC--CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-C-CCc----ccC-Ce
Confidence 887765332 11 10000111222 2677655432211001124788888 45555431 0 100 011 33
Q ss_pred EEE-CC-eEEEEEcCCCcEEEEEec-cCC-C-CcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe
Q 044435 261 YVL-KG-CLSLLCKYSEPWDLWVMK-EYG-V-KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR 334 (378)
Q Consensus 261 ~~~-~G-~L~~~~~~~~~l~iW~l~-~~~-~-~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~ 334 (378)
+.. +| .|+++......+.+|.++ ..+ . ...- ....++.......-+.+..+|. +++.. ....+..||++++.
T Consensus 185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~-~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~ 262 (326)
T 2ghs_A 185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE-VFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNH 262 (326)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE-EEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCE
T ss_pred EEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce-EEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCE
Confidence 333 56 467765544455555554 111 1 0000 1122221111133355556777 55554 44579999997776
Q ss_pred EEEEeE
Q 044435 335 VESFLV 340 (378)
Q Consensus 335 ~~~v~~ 340 (378)
.+.+..
T Consensus 263 ~~~i~~ 268 (326)
T 2ghs_A 263 IARYEV 268 (326)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 776654
No 254
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=45.69 E-value=1.9e+02 Score=26.85 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=64.7
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD 289 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~ 289 (378)
+|.....+..++ .|..+|...+....+..... .+..++.. +|+..+....++.+.+|....
T Consensus 314 ~~~~l~t~~~d~------~i~~w~~~~~~~~~~~~~~~-------~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----- 375 (577)
T 2ymu_A 314 DGQTIASASDDK------TVKLWNRNGQHLQTLTGHSS-------SVWGVAFSPDGQTIASASDDKTVKLWNRNG----- 375 (577)
T ss_dssp TSSEEEEEETTS------CEEEEETTSCEEEEECCCSS-------CEEEEEECTTSSEEEEEETTSEEEEEETTC-----
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeEEEeCCCC-------CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----
Confidence 455544444432 58888888777665532211 11033333 677766666667899997432
Q ss_pred ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
.....+........-+++.++|..++....++.+..||...+..+.+
T Consensus 376 --~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~ 422 (577)
T 2ymu_A 376 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 422 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE
T ss_pred --CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe
Confidence 12333333111255677788888777777777799999877766655
No 255
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=45.67 E-value=1.5e+02 Score=25.55 Aligned_cols=93 Identities=9% Similarity=0.112 Sum_probs=50.7
Q ss_pred EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435 229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL 307 (378)
Q Consensus 229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 307 (378)
.|..+|...+....+.- +.. .+..+... +|++.+....++.+.||-+..... . ...+... ....-+
T Consensus 195 ~i~iwd~~~~~~~~~~~--h~~-----~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-~----~~~~~~~-~~v~~v 261 (343)
T 2xzm_R 195 RLKVWNTNFQIRYTFKA--HES-----NVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-P----QREFDAG-STINQI 261 (343)
T ss_dssp EEEEEETTTEEEEEEEC--CSS-----CEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-C----SEEEECS-SCEEEE
T ss_pred EEEEEcCCCceeEEEcC--ccc-----cceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-c----ceeecCC-CcEEEE
Confidence 68888855443332221 111 11033333 677777777777999998854221 1 1111111 114557
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 308 AFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
++++++.++. ...+..+..||+.+.+.
T Consensus 262 ~~sp~~~~la-~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 262 AFNPKLQWVA-VGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp EECSSSCEEE-EEESSCEEEEESSSCCS
T ss_pred EECCCCCEEE-EECCCCEEEEEeCCCCC
Confidence 7778887544 44455689999887653
No 256
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=45.24 E-value=71 Score=28.65 Aligned_cols=45 Identities=7% Similarity=-0.008 Sum_probs=29.4
Q ss_pred eEEEEEecC-CCceeEEEEEEeCCCEEEEEe--CCCeEEEEECCCCeEEE
Q 044435 291 WSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK--NSKDHCWYHLDMHRVES 337 (378)
Q Consensus 291 W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~--~~~~~~~ydl~~~~~~~ 337 (378)
...+.+|+. .. ..-+.+.++|..+++.. .++.+-++|+++.+..+
T Consensus 304 ~~vv~~i~vg~~--p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 304 GQTSGPISNGHD--SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp CCEEECCEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CeEEEEEECCCC--cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 555566654 31 33466677887555544 36779999999988653
No 257
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=44.74 E-value=1.7e+02 Score=26.04 Aligned_cols=137 Identities=7% Similarity=-0.032 Sum_probs=74.3
Q ss_pred eEEEEEEcCCCcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC
Q 044435 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN 250 (378)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 250 (378)
..+.+++..++.-...-.. .. .. ..-.++. -+|.+...+..+. .|..+|+.+++..... ..+..
T Consensus 125 ~tV~lWd~~tg~~~~~~~~---~~--~~--~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~-~~h~~ 190 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQM---EQ--PG--EYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNM-TSHSA 190 (420)
T ss_dssp TEEEEEETTTCCEEEEEEC---CS--TT--CCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE-CCCSS
T ss_pred CEEEEEECCCCCEEEEEEe---cC--CC--CcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEE-eCCCC
Confidence 4688999888765443211 00 00 0001222 2566666665543 6999999887653331 11111
Q ss_pred CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
.. .-...++.+.+....+..+.+|..... ...+..+.........+...++|..++....++.+..+|.
T Consensus 191 -----~v-~~~s~~~~~l~sgs~d~~i~~~d~~~~-----~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 191 -----RV-GSLSWNSYILSSGSRSGHIHHHDVRVA-----EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp -----CE-EEEEEETTEEEEEETTSEEEEEETTSS-----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred -----ce-EEEeeCCCEEEEEeCCCceeEeeeccc-----ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 11 223346777676666678888866542 1222333331112445566667876777777777888887
Q ss_pred CCCe
Q 044435 331 DMHR 334 (378)
Q Consensus 331 ~~~~ 334 (378)
.+++
T Consensus 260 ~~~~ 263 (420)
T 4gga_A 260 APGE 263 (420)
T ss_dssp SCCS
T ss_pred cccc
Confidence 7654
No 258
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=44.26 E-value=2.8e+02 Score=28.47 Aligned_cols=97 Identities=7% Similarity=0.026 Sum_probs=54.9
Q ss_pred EEE-EEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435 229 LIL-AFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP 306 (378)
Q Consensus 229 ~i~-~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 306 (378)
.+. .+|+.+.+...+. +... ... .+..+ +|+..+....+..+.+|-++.. .-. ..+.........
T Consensus 359 ~l~~~~d~~~~~~~~l~-~~~~-----~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg----~~~--~~~~~~~~~v~~ 425 (1045)
T 1k32_A 359 DFLGIYDYRTGKAEKFE-ENLG-----NVF-AMGVDRNGKFAVVANDRFEIMTVDLETG----KPT--VIERSREAMITD 425 (1045)
T ss_dssp EEEEEEETTTCCEEECC-CCCC-----SEE-EEEECTTSSEEEEEETTSEEEEEETTTC----CEE--EEEECSSSCCCC
T ss_pred ceEEEEECCCCCceEec-CCcc-----cee-eeEECCCCCEEEEECCCCeEEEEECCCC----ceE--EeccCCCCCccc
Confidence 688 8898877665543 2111 111 33333 6766555555557778877541 111 112111111334
Q ss_pred EEEEeCCCEEEEEeCC----------CeEEEEECCCCeEEEE
Q 044435 307 LAFSSRGDKVLFQKNS----------KDHCWYHLDMHRVESF 338 (378)
Q Consensus 307 ~~~~~~g~~v~~~~~~----------~~~~~ydl~~~~~~~v 338 (378)
+.+.++|..+++...+ ..++.+|+++++.+.+
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 6778899866665432 2599999999886655
No 259
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=43.15 E-value=2.3e+02 Score=27.20 Aligned_cols=70 Identities=1% Similarity=-0.057 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCcEEEEEeccCCC-CcceEEEEEecC----CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435 264 KGCLSLLCKYSEPWDLWVMKEYGV-KDSWSKLFTMNE----NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV 335 (378)
Q Consensus 264 ~G~L~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~----~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~ 335 (378)
+|++.++...++++.||.++.... +.+..++..+.. ...+..-+++.++| ++....++.+..+|+.+++.
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 788888888888999999886311 113345566643 12246667888888 55566677799999988884
No 260
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=42.73 E-value=89 Score=26.49 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=12.8
Q ss_pred eccceEEEeecCCcEEEEcCcccc
Q 044435 105 SCNGLLALKNYPKGIILLNPLTKK 128 (378)
Q Consensus 105 s~~GLl~l~~~~~~~~V~NP~t~~ 128 (378)
..+|.|.+.... ++.+|+ +++
T Consensus 68 ~~~g~l~v~t~~--l~~~d~-~g~ 88 (330)
T 3hxj_A 68 GKDGTIYFGSDK--VYAINP-DGT 88 (330)
T ss_dssp TTTTEECCSSCE--EEEECC-CGG
T ss_pred ecCCcEEEecCc--EEEECC-CCc
Confidence 346766555433 888898 544
No 261
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=41.60 E-value=1.5e+02 Score=26.89 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
+.+.+....++.+.||-+... ..............-++++++|..++....++.+..||.+....+.+
T Consensus 162 ~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp TTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEE
T ss_pred CCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccc
Confidence 566666666678999988752 11211111111255677788898888888888899999985444444
No 262
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=41.46 E-value=1.8e+02 Score=25.28 Aligned_cols=98 Identities=6% Similarity=0.014 Sum_probs=51.7
Q ss_pred eEEEEEEcCCceeeeec-CCCCCCCCCCcccceEEEE--CCe-EEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-
Q 044435 228 DLILAFDLNIETFYSMP-MPGFGNEGGGGELSGVYVL--KGC-LSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE- 299 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~~~~l~~~--~G~-L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~- 299 (378)
..|..+|+.+++...+. -+... . .+..+ +|+ |.++..... ...||.++-.+. . . ..+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~~~-------~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~---~~l~~~ 234 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQWL-------G-HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-N-M---RKVKTH 234 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESSCE-------E-EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-C-C---EESCCC
T ss_pred ceEEEEECCCCceEEeecCCccc-------c-ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-c-e---EEeeeC
Confidence 47899999888766652 22111 1 22332 454 444443221 456777764322 1 1 11221
Q ss_pred CC-ceeEEEEEEeCCCEEEEEeC--CC---eEEEEECCCCeEEEE
Q 044435 300 NG-YRVIPLAFSSRGDKVLFQKN--SK---DHCWYHLDMHRVESF 338 (378)
Q Consensus 300 ~~-~~~~~~~~~~~g~~v~~~~~--~~---~~~~ydl~~~~~~~v 338 (378)
.. ....-..+.++|+.|++... .. .++.+|+++++.+.+
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 11 11333456778885544332 11 299999999998777
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=40.89 E-value=2.1e+02 Score=25.99 Aligned_cols=151 Identities=10% Similarity=0.027 Sum_probs=77.4
Q ss_pred Eeee-ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGS-CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s-~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
.++. .+|.|.+.+....+.++|+.+++...+... .....++.+|+..+...| . ..........+.+++.
T Consensus 143 avdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-------~~~P~~ia~d~~G~~lyv-a--d~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-------LSKVRTICWTHEADSMII-T--NDQNNNDRPNNYILTR 212 (430)
T ss_dssp EEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-------CSCEEEEEECTTSSEEEE-E--ECCSCTTSEEEEEEEG
T ss_pred EECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-------CCCcceEEEeCCCCEEEE-E--eCCCCcccceEEEEeC
Confidence 3443 467776665447788899988877666431 123447777765542222 1 1111111223444544
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGE 256 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~ 256 (378)
.+.|...... +. .....++.+ +|.||+..... ..|..||+.+.....+ .++.... -
T Consensus 213 -~g~~~~~~~l---~~-----~~~p~giavdp~~g~lyv~d~~~------~~V~~~~~~~~~~~~~~~~~~~~~-----P 272 (430)
T 3tc9_A 213 -ESGFKVITEL---TK-----GQNCNGAETHPINGELYFNSWNA------GQVFRYDFTTQETTPLFTIQDSGW-----E 272 (430)
T ss_dssp -GGTSCSEEEE---EE-----CSSCCCEEECTTTCCEEEEETTT------TEEEEEETTTTEEEEEEECSSSSC-----C
T ss_pred -CCceeeeeee---cc-----CCCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCcEEEEEEcCCCCc-----c
Confidence 2333211111 10 111234444 68899876544 3799999987766333 4443211 1
Q ss_pred cceEEEE-CCe-EEEEEcCCCcEEEEEec
Q 044435 257 LSGVYVL-KGC-LSLLCKYSEPWDLWVMK 283 (378)
Q Consensus 257 ~~~l~~~-~G~-L~~~~~~~~~l~iW~l~ 283 (378)
. .++.. +|+ |+++.....++..+..+
T Consensus 273 ~-gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 273 F-HIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp E-EEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred e-eEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 1 34553 565 88887655555444443
No 264
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=39.59 E-value=76 Score=28.39 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=53.8
Q ss_pred eEEEEEEcCCceeeee---cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCce
Q 044435 228 DLILAFDLNIETFYSM---PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYR 303 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~ 303 (378)
..|..+|+.++....+ .+|.+-... . .-+...|.+.+....++++.||-+... ..++.+.. ....
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~----~-lsg~~sg~~lASgS~DgTIkIWDl~tG------k~l~tL~gH~~~v 328 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGR----F-LEGDVKDHCAAAILTSGTIAIWDLLLG------QCTALLPPVSDQH 328 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCC----E-EEEEEETTEEEEEETTSCEEEEETTTC------SEEEEECCC--CC
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcce----e-EccccCCCEEEEEcCCCcEEEEECCCC------cEEEEecCCCCCe
Confidence 4677788887765332 345332211 1 112223566666666779999998752 13344443 2212
Q ss_pred eEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435 304 VIPLAFSSRGDKVLFQKNSKDHCWYHL 330 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl 330 (378)
...++++++|.+++-...++.+..||.
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 345788899997777777777888874
No 265
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=39.42 E-value=99 Score=27.41 Aligned_cols=26 Identities=12% Similarity=-0.109 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 313 GDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 313 g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
++.|++...++++++.|++|++..+-
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEE
Confidence 45577777777899999999987766
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=38.87 E-value=3e+02 Score=27.19 Aligned_cols=214 Identities=11% Similarity=0.108 Sum_probs=103.1
Q ss_pred EeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCC-CCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435 102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLH-GDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL 180 (378)
Q Consensus 102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~-~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 180 (378)
+....+|-+.+......++++||.++++......+.... ........+..|.. +. +.+.. .. .+.+|+.
T Consensus 220 i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~---lWigt-----~~-Gl~~~~~ 289 (795)
T 4a2l_A 220 ILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQ-NR---LWIGT-----FN-DLNIYHE 289 (795)
T ss_dssp EEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTT-SC---EEEEE-----SS-CEEEEET
T ss_pred EEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCC-CC---EEEEe-----CC-hhheEcC
Confidence 333446666666555578999999988876654321110 00112333444432 22 22222 11 4778888
Q ss_pred CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS 258 (378)
Q Consensus 181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~ 258 (378)
.++.+........-+. ......-.+++. +|. .|++..+. .|..||..+..|..+.............+.
T Consensus 290 ~~~~~~~~~~~~~~~~--~l~~~~i~~i~~D~~g~-lWigt~~~------Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~ 360 (795)
T 4a2l_A 290 GTDSFASYSSNPVENG--SLSQRSVRSIFMDSQGG-MWLGTYFG------GLNYYHPIRNRFKNIRNIPYKNSLSDNVVS 360 (795)
T ss_dssp TTTEEEEECCCTTSTT--SCSSSCEEEEEECTTSC-EEEEESSS------CEEEECGGGGSSEEECCCTTSSSCSCSSEE
T ss_pred CCCeEEEEecCCCCCC--CCCCCcEEEEEEeCCcC-EEEEECCC------CeEEeCCCcccceEEcCCCCCCCCCCCeeE
Confidence 8888877643300011 111111112333 344 56666543 589999988888777332111110011111
Q ss_pred eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEe------cCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435 259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTM------NENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD 331 (378)
Q Consensus 259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i------~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~ 331 (378)
.+.+. +|.|.+.....+ +..+ +.. ...+.....- .+.......+....+|..+.+...+..++.||.+
T Consensus 361 ~i~~d~~g~lWiGt~~~G-l~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 361 CIVEDKDKNLWIGTNDGG-LNLY--NPI--TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp EEEECTTSCEEEEESSSC-EEEE--CTT--TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred EEEECCCCCEEEEECCCC-eEEE--cCC--CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 33332 466666543322 2222 211 1223322110 0101113334444456647777765669999999
Q ss_pred CCeEEEEe
Q 044435 332 MHRVESFL 339 (378)
Q Consensus 332 ~~~~~~v~ 339 (378)
+++++.+.
T Consensus 436 ~~~~~~~~ 443 (795)
T 4a2l_A 436 SGQVENFN 443 (795)
T ss_dssp TCCEEEEC
T ss_pred CCcEEEee
Confidence 98887763
No 267
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=38.51 E-value=52 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=28.0
Q ss_pred cEEEEcCccc-ceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435 118 GIILLNPLTK-KHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH 164 (378)
Q Consensus 118 ~~~V~NP~t~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 164 (378)
.++++||.|+ +|+..-... ..+.+-+|...+.|+|+++.
T Consensus 17 ~Vm~~D~~tk~~WvP~g~~~--------~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSKHA--------VTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEECTTSSCCSEESCSSC--------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCCCceeecCCCC--------eEEEEEEcCCCCEEEEEEcc
Confidence 4788899997 896543321 24456688888899999864
No 268
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=38.22 E-value=1.8e+02 Score=24.42 Aligned_cols=111 Identities=8% Similarity=-0.077 Sum_probs=54.8
Q ss_pred ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEeccC
Q 044435 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEY 285 (378)
Q Consensus 207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~ 285 (378)
.+..+|.+++..... ..|.+||...+..-.+..+.... .... .+|.+.++.....++ -.++..
T Consensus 131 ~~~~~G~~lv~~~~~------~~v~~~d~~G~~~w~~~~~~~~~--------~~~~~~~g~~~v~~~~~~~v--~~~d~~ 194 (276)
T 3no2_A 131 NKNKKGNYLVPLFAT------SEVREIAPNGQLLNSVKLSGTPF--------SSAFLDNGDCLVACGDAHCF--VQLNLE 194 (276)
T ss_dssp EECTTSCEEEEETTT------TEEEEECTTSCEEEEEECSSCCC--------EEEECTTSCEEEECBTTSEE--EEECTT
T ss_pred eECCCCCEEEEecCC------CEEEEECCCCCEEEEEECCCCcc--------ceeEcCCCCEEEEeCCCCeE--EEEeCc
Confidence 345578877655433 37999999743333344442111 1222 356666655544333 233332
Q ss_pred CCCcceEEEE-EecC-CCceeEEEEEEeCCCEEEEEeC-----------CCeEEEEECCCCe
Q 044435 286 GVKDSWSKLF-TMNE-NGYRVIPLAFSSRGDKVLFQKN-----------SKDHCWYHLDMHR 334 (378)
Q Consensus 286 ~~~~~W~~~~-~i~~-~~~~~~~~~~~~~g~~v~~~~~-----------~~~~~~ydl~~~~ 334 (378)
..+..|+.-. .++. ++.....+.+.++|. +++... ..+++.+|.+.+.
T Consensus 195 tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~ 255 (276)
T 3no2_A 195 SNRIVRRVNANDIEGVQLFFVAQLFPLQNGG-LYICNWQGHDREAGKGKHPQLVEIDSEGKV 255 (276)
T ss_dssp TCCEEEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEEECTTCTTGGGSCCCSEEEECTTSBE
T ss_pred CCcEEEEecCCCCCCccccccccceEcCCCC-EEEEeccCccccccccCCceEEEECCCCCE
Confidence 1233455431 1222 333345556666888 445441 2248888875544
No 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=36.63 E-value=3e+02 Score=26.53 Aligned_cols=190 Identities=9% Similarity=-0.033 Sum_probs=83.8
Q ss_pred EEEeecCCcEEEEcCcccc-eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-cEEe
Q 044435 110 LALKNYPKGIILLNPLTKK-HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-LWRR 187 (378)
Q Consensus 110 l~l~~~~~~~~V~NP~t~~-~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-~W~~ 187 (378)
|++......+.+.|...+. -..++... .....++.||+..+...+. . .....+..++.... .+..
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~------~~~~~~ld~~~~~~~ly~s---D----~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGG------LEDAAAVDFVFSHGLIYWS---D----VSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBC------CSCEEEEEEETTTTEEEEE---E----TTTTEEEEEEC-----CEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcC------CCceEEEEEEeCCCEEEEE---E----CCCCeEEEEEccCCCceEE
Confidence 3444456667777776543 22333222 1234577888765542221 1 11234555555433 1222
Q ss_pred cCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE--
Q 044435 188 IKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-- 262 (378)
Q Consensus 188 ~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-- 262 (378)
+-.. .. ....++.+ +|.+||..... ..|.++|+....-..+-. ..... .. .|+.
T Consensus 78 v~~~-------~~--~~P~GlAvD~~~~~ly~~d~~~------~~I~v~~~dG~~~~~l~~-~~l~~--P~---~Iavdp 136 (619)
T 3s94_A 78 VVVS-------GL--LSPDGLACDWLGEKLYWTDSET------NRIEVSNLDGSLRKVLFW-QELDQ--PR---AIALDP 136 (619)
T ss_dssp EECS-------SC--SCEEEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEEC-SSCSC--CC---CEEEET
T ss_pred EEeC-------CC--CCcCeEEEEecCCEEEEEeCCC------CEEEEEECCCCCEEEEEe-CCCCC--Cc---eEEEec
Confidence 2111 11 12234554 68899987554 389999998754443321 11111 11 3455
Q ss_pred ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 263 LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 263 ~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
.+|.||....... -.||...-.+... =.. +........-+++..+++.|++... ...+..+|+++...+.+
T Consensus 137 ~~g~ly~tD~g~~-~~I~r~~~dG~~~-~~l---~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 208 (619)
T 3s94_A 137 SSGFMYWTDWGEV-PKIERAGMDGSSR-FII---INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 208 (619)
T ss_dssp TTTEEEEEECSSS-CEEEEEETTSCSC-EEE---ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--
T ss_pred CCCeEEEeccCCC-CEEEEEECCCCce-EEE---EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE
Confidence 3688888874422 3455444333211 000 1111111223444433444555543 23477777766555544
No 270
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=32.68 E-value=3.4e+02 Score=26.08 Aligned_cols=159 Identities=11% Similarity=-0.082 Sum_probs=77.1
Q ss_pred ceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecC
Q 044435 145 SLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQN 221 (378)
Q Consensus 145 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~ 221 (378)
...++.||+..+...+.- .....+..++.....++.+-.. .. ....++.+ +|.|||.....
T Consensus 350 ~~~~ld~d~~~~~ly~sD-------~~~~~I~r~~~~g~~~~~v~~~-------~~--~~p~GlAvD~~~~~lY~tD~~~ 413 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTD-------DEVRAIRRSFIDGSGSQFVVTA-------QI--AHPDGIAVDWVARNLYWTDTGT 413 (619)
T ss_dssp SEEEEEEETTTTEEEEEE-------TTTTEEEEEETTSCSCEEEECS-------SC--SCCCEEEEETTTTEEEEEETTT
T ss_pred ccEEEEEEcCCCeEEEEe-------CCCCeEEEEEcCCCccEEEEEC-------CC--CCcCceEEecccCcEEEEeCCC
Confidence 355777877655422221 1123455556555444443211 11 12224444 58999986544
Q ss_pred CCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCC-cEEEEEeccCCCCcceEEEEEec
Q 044435 222 QDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSE-PWDLWVMKEYGVKDSWSKLFTMN 298 (378)
Q Consensus 222 ~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~-~l~iW~l~~~~~~~~W~~~~~i~ 298 (378)
..|.++++....-..+.- .... .+..++.. +|.||....... .+....++ +... . .+-
T Consensus 414 ------~~I~v~~~~G~~~~~l~~-~~l~-----~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d--G~~~---~--~l~ 474 (619)
T 3s94_A 414 ------DRIEVTRLNGTMRKILIS-EDLE-----EPRAIVLDPMVGYMYWTDWGEIPKIERAALD--GSDR---V--VLV 474 (619)
T ss_dssp ------TEEEEEETTSCSCEEEEC-TTCC-----SEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSC---E--EEE
T ss_pred ------CcEEEEeCCCCeEEEEEE-CCCC-----CeeeEEEEcCCCcEEEecCCCCCEEEEEccC--CCcc---E--EEE
Confidence 379999988664433321 1111 11145554 589998875442 43333333 2211 0 111
Q ss_pred C-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435 299 E-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 299 ~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v 338 (378)
. .+.+..-+++..+++.|++... ..++..+|+++...+.+
T Consensus 475 ~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 516 (619)
T 3s94_A 475 NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVL 516 (619)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE
T ss_pred eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 1 2212333444443444555543 33577777766655555
No 271
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=31.74 E-value=3.6e+02 Score=25.98 Aligned_cols=201 Identities=6% Similarity=-0.073 Sum_probs=92.3
Q ss_pred cEEEEcCcccce---eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE----cCCCcEEecCc
Q 044435 118 GIILLNPLTKKH---RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG----LKVNLWRRIKN 190 (378)
Q Consensus 118 ~~~V~NP~t~~~---~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys----s~~~~W~~~~~ 190 (378)
.+.++|..+++. ..+..+.... ........+.+.|. + +++.... ........+.+++ ..++.++.+-.
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SpD-~--~~~~~~~-~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVTD-E--RVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESSS-S--EEEEEEE-ESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred EEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeCC-C--eEEEEEe-ccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 577999998874 2454321100 00112334555555 3 2333322 2223345677888 66666654431
Q ss_pred ----ccCCCcccccc-ccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEEC
Q 044435 191 ----IKNFPYSWADH-SYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLK 264 (378)
Q Consensus 191 ----~~~~p~~~~~~-~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~ 264 (378)
. ..++... ........-||. +++......+ ...|..+|+.+.+...+. ...... .. .....+
T Consensus 300 ~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt--~~~~~v--~~--~~~~d~ 367 (719)
T 1z68_A 300 HIEES---RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQIT--SGKWEA--IN--IFRVTQ 367 (719)
T ss_dssp EEEEC---SSSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECS--CSSSCE--EE--EEEECS
T ss_pred ccccc---CCceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEecc--cCceEE--EE--EEEEeC
Confidence 1 0100000 000112223566 4443332222 147888998877644432 111100 11 122223
Q ss_pred CeEEEEEcC----CCcEEEEEeccCCCCcceEEEEEecC----CCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCC
Q 044435 265 GCLSLLCKY----SEPWDLWVMKEYGVKDSWSKLFTMNE----NGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMH 333 (378)
Q Consensus 265 G~L~~~~~~----~~~l~iW~l~~~~~~~~W~~~~~i~~----~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~ 333 (378)
+.|++.... .....+|.++..+..... ..+.. .......+.+.++|+.+++.... ..++.||++++
T Consensus 368 ~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 368 DSLFYSSNEFEEYPGRRNIYRISIGSYPPSK---KCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEECSSSSCCE---EESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CEEEEEEecCCCCCceEEEEEEeCCCCCCCc---eeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 456666554 247889998753211111 12221 01123445666777756654432 24778898877
Q ss_pred eEEEE
Q 044435 334 RVESF 338 (378)
Q Consensus 334 ~~~~v 338 (378)
+...+
T Consensus 445 ~~~~~ 449 (719)
T 1z68_A 445 QEIKI 449 (719)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 74433
No 272
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=30.98 E-value=2.9e+02 Score=24.63 Aligned_cols=74 Identities=12% Similarity=-0.058 Sum_probs=42.4
Q ss_pred eEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC---CCceeEEEEEEeCCCEEEEEe------------C
Q 044435 259 GVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQK------------N 321 (378)
Q Consensus 259 ~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~------------~ 321 (378)
.+... +|.+.+....+.++.||-++.. ..++++.. .......+++.++|..++... .
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTG------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTC------CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCC------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 44554 4577777777789999998751 12333332 111233456777887443321 2
Q ss_pred CCeEEEEECCCCeEEEE
Q 044435 322 SKDHCWYHLDMHRVESF 338 (378)
Q Consensus 322 ~~~~~~ydl~~~~~~~v 338 (378)
+..+..+|+++++.-.+
T Consensus 259 D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGV 275 (356)
T ss_dssp CEEEEEEETTTTEEEEE
T ss_pred CcEEEEEECCCCEEEEE
Confidence 33477789888875443
No 273
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=30.21 E-value=3.8e+02 Score=25.83 Aligned_cols=102 Identities=9% Similarity=-0.039 Sum_probs=54.4
Q ss_pred eEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCcee
Q 044435 228 DLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRV 304 (378)
Q Consensus 228 ~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~ 304 (378)
..|..+|+.+.+...+ ..+......... .+.. -+|++.++...++...||.++..+ . ...+.. .....
T Consensus 312 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~---~~~~spdg~~~~~~~~~g~~~l~~~~~~~---~---~~~l~~~~~~v~ 382 (741)
T 2ecf_A 312 LDLVEVTLASNQQRVLAHETSPTWVPLHN---SLRFLDDGSILWSSERTGFQHLYRIDSKG---K---AAALTHGNWSVD 382 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCS---CCEECTTSCEEEEECTTSSCEEEEECSSS---C---EEESCCSSSCEE
T ss_pred EEEEEEECCCCceEEEEEcCCCCcCCcCC---ceEECCCCeEEEEecCCCccEEEEEcCCC---C---eeeeeecceEEE
Confidence 4788999988776554 222111000000 1222 278866666555678899887432 1 223332 22223
Q ss_pred EEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEEE
Q 044435 305 IPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVESF 338 (378)
Q Consensus 305 ~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~v 338 (378)
.+.++.++|+.|++..... +++..++.++..+.+
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 3446788898776655432 366666655545544
No 274
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.74 E-value=56 Score=21.64 Aligned_cols=23 Identities=4% Similarity=-0.009 Sum_probs=17.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeEE
Q 044435 314 DKVLFQKNSKDHCWYHLDMHRVE 336 (378)
Q Consensus 314 ~~v~~~~~~~~~~~ydl~~~~~~ 336 (378)
.-+.....++++|+||..|++-.
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~S~ 43 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRLSM 43 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTEEC
T ss_pred CcEEEECCCCCEEEecCccccee
Confidence 34666677888999999998743
No 275
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=29.39 E-value=15 Score=18.38 Aligned_cols=9 Identities=67% Similarity=0.988 Sum_probs=3.5
Q ss_pred chhhhccCC
Q 044435 369 TRKRRKGKR 377 (378)
Q Consensus 369 ~~~~~~~~~ 377 (378)
+++|+|.||
T Consensus 4 rrrrrkrkr 12 (28)
T 3ukx_C 4 RRRRRKRKR 12 (28)
T ss_dssp --CCCCCCC
T ss_pred hHHHHHhhc
Confidence 344455554
No 276
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=29.38 E-value=2.8e+02 Score=23.94 Aligned_cols=213 Identities=8% Similarity=0.004 Sum_probs=94.0
Q ss_pred eccc-eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC---------------
Q 044435 105 SCNG-LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--------------- 168 (378)
Q Consensus 105 s~~G-Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--------------- 168 (378)
+-+| .|.+......++++|+.|++...+-..+... .....+..++. +.+ ++.+.....
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~d-g~~-l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW----VGYGTWVANSD-CTK-LVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTT-SSE-EEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc----ccccceeECCC-CCe-eccccccCcccccccccchhhhhh
Confidence 3344 3555555567999999999877664333210 00111222222 222 333221110
Q ss_pred -CCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee-CCe-EEEEeecCCCcccceEEEEEEcCCceeeeecC
Q 044435 169 -PVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV-NGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPM 245 (378)
Q Consensus 169 -~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~-~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l 245 (378)
......+.+++..++.-+.+... +. .. ......= +|. +.+..... .......|..+|..+.....+.-
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~---~~--~~---~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQE---NQ--WL---GHPIYRPYDDSTVAFCHEGP-HDLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEE---SS--CE---EEEEEETTEEEEEEEEECSC-TTTSSCSEEEEETTSCCCEESCC
T ss_pred ccCCcceEEEEECCCCceEEeecC---Cc--cc---cccEECCCCCCEEEEEEecC-CCCCcceEEEEeCCCCceEEeee
Confidence 11235678888887765544322 11 00 0111222 454 43443321 11112368888887766554421
Q ss_pred CCCCCCCCCcccceEEEE-CCe-EEEEEcCCC--cEEEEEeccCCCCcceEEEEEecC-CCce--eEEEEEEeCCCEEEE
Q 044435 246 PGFGNEGGGGELSGVYVL-KGC-LSLLCKYSE--PWDLWVMKEYGVKDSWSKLFTMNE-NGYR--VIPLAFSSRGDKVLF 318 (378)
Q Consensus 246 P~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~--~l~iW~l~~~~~~~~W~~~~~i~~-~~~~--~~~~~~~~~g~~v~~ 318 (378)
.... .......-+ +|+ |.++....+ ...||.++-... .-..+...+. .... .....+.++|..+++
T Consensus 234 ~~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 234 HAEG-----ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL--ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp CCTT-----EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC--CEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred CCCC-----cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC--ceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 1100 011012222 564 655554333 433555443221 1222222221 0000 001245667775555
Q ss_pred E---------eCCCeEEEEECCCCeEEEEe
Q 044435 319 Q---------KNSKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 319 ~---------~~~~~~~~ydl~~~~~~~v~ 339 (378)
. .....++.+|+++++.+.+.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp ----------CCCCEEEEEETTTTEEEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCCceEEec
Confidence 3 22346999999999998884
No 277
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=28.99 E-value=4e+02 Score=25.74 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=59.6
Q ss_pred EEEEEEcCCc--eeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC-cEEEEEeccCCC-CcceEEEEEecC-CCce
Q 044435 229 LILAFDLNIE--TFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-PWDLWVMKEYGV-KDSWSKLFTMNE-NGYR 303 (378)
Q Consensus 229 ~i~~fD~~~~--~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~l~iW~l~~~~~-~~~W~~~~~i~~-~~~~ 303 (378)
.|..+|+.+. ++..+..+.... .. .+...+++|+++...+. ...|+.++-... ...|..+ ++. ..
T Consensus 260 ~i~~~d~~~~~~~~~~l~~~~~~~----~~--~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~-- 329 (693)
T 3iuj_A 260 RLYVKDLSQENAPLLTVQGDLDAD----VS--LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL--IPERQQ-- 329 (693)
T ss_dssp EEEEEETTSTTCCCEEEECSSSSC----EE--EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE--ECCCSS--
T ss_pred EEEEEECCCCCCceEEEeCCCCce----EE--EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE--ecCCCC--
Confidence 6777887665 666664443221 11 23445788888877654 556666553322 2458743 333 22
Q ss_pred eEEEEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEeE
Q 044435 304 VIPLAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFLV 340 (378)
Q Consensus 304 ~~~~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~~ 340 (378)
. . .+..+|+.+++..... ++..+|++++..+.|..
T Consensus 330 ~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~ 367 (693)
T 3iuj_A 330 V-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVAL 367 (693)
T ss_dssp C-E-EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECC
T ss_pred E-E-EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeec
Confidence 1 2 6667787666654332 59999999988888743
No 278
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=28.16 E-value=3.6e+02 Score=24.95 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=62.0
Q ss_pred CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEc-----------------
Q 044435 211 NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCK----------------- 272 (378)
Q Consensus 211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~----------------- 272 (378)
+| +|.....+..+..+..|+.+|..+.+. ..++.+...... .+.+ +. .-+++..++..
T Consensus 148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~-~Yd~-~~-~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYL-AYDF-WW-NLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCC-CCCE-EE-ETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccc-cceE-EE-CCCCCEEEEccCcCccccccccchhhhh
Confidence 46 776554432233446899999986554 444544322111 1211 11 12455444442
Q ss_pred --CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEE--E--EeCCCEEEEEeC------CCeEEEEECCCCeEEEEe
Q 044435 273 --YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLA--F--SSRGDKVLFQKN------SKDHCWYHLDMHRVESFL 339 (378)
Q Consensus 273 --~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~--~--~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v~ 339 (378)
...++.+|.++. ...+.+|+. .. ...|.. + +++|...++... +..+++|..+.++|+.+.
T Consensus 224 ~~~~d~V~v~D~~~------~k~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 224 DRYGNRIHFWDLRK------RKRIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp HHSCCEEEEEETTT------TEEEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred hccCCEEEEEECCC------CcEeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 123888888874 255667776 33 234433 2 678887666553 334554444457776664
No 279
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=27.13 E-value=2.4e+02 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=18.1
Q ss_pred eEEEEEEcCCc---eeeeecCCCCCCC
Q 044435 228 DLILAFDLNIE---TFYSMPMPGFGNE 251 (378)
Q Consensus 228 ~~i~~fD~~~~---~~~~i~lP~~~~~ 251 (378)
-.|++||+.++ ....+.+|.....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~ 149 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVE 149 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCC
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcc
Confidence 48999999997 4566799876543
No 280
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=26.84 E-value=1.9e+02 Score=25.56 Aligned_cols=112 Identities=7% Similarity=-0.089 Sum_probs=55.7
Q ss_pred cceEEEeecCCcEEEEcCcccceeecCCCC--CCCCCCCCceeEEeeecC-CCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435 107 NGLLALKNYPKGIILLNPLTKKHRVLPKFY--RDLHGDKPSLHGFGYDVG-SDDYKLVRIHVFKSPVYHIEATVYGLKVN 183 (378)
Q Consensus 107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~--~~~~~~~~~~~~~g~d~~-~~~ykvv~~~~~~~~~~~~~~~vyss~~~ 183 (378)
+|+|++.+.+..++.+|..||+.+.--... .+. ........ .+.. ++.+.. ...-.+..|+..++
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~-------~~~~~~~~~~~~~-~~vv~p----~~dG~l~a~~~~~G 77 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL-------IEIQEPSRLETYE-TLIIEP----FGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCS-------EECCCSCTTTSSE-EEEECC----STTTEEEEEETTTE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCc-------EEecCCccccCCc-EEEEEE----CCCCEEEEEECCCC
Confidence 566777777777888888887644332111 110 00000000 1112 222210 12345677777777
Q ss_pred cEEecCcccCCCccccc----cccCCccee-------eCCeEEEEeecCCCcccceEEEEEEcCCceeee
Q 044435 184 LWRRIKNIKNFPYSWAD----HSYGGNGAF-------VNGALHWLANQNQDEMINDLILAFDLNIETFYS 242 (378)
Q Consensus 184 ~W~~~~~~~~~p~~~~~----~~~~~~~v~-------~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~ 242 (378)
.|+-.-.. |. .. ......+|. .+|.+|.-...+ .+.++|..+++-.+
T Consensus 78 ~~~~~~~~---~~--lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g-------~l~ald~~tG~~~W 135 (339)
T 2be1_A 78 LQKLPLSI---RQ--LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT-------IMYTINMLNGEIIS 135 (339)
T ss_dssp EEEEEEEH---HH--HHTTCSEEEECC----------CCEEEEECEEEE-------EEEEEETTTCCEEE
T ss_pred cEEeeecc---cc--ceeccccccCCCceeecccccccCCEEEEEecCC-------EEEEEECCCCcEEE
Confidence 66532222 11 11 011233555 789999877665 79999998775544
No 281
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.75 E-value=94 Score=23.08 Aligned_cols=40 Identities=8% Similarity=-0.115 Sum_probs=25.3
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEee-----ecCCCCeEEEEEE
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGY-----DVGSDDYKLVRIH 164 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~-----d~~~~~ykvv~~~ 164 (378)
.++++||.+++|...... ..+...+.+ |...+.|+|++..
T Consensus 21 ~Vm~~D~~~~~W~p~~~g-------~ls~v~v~~~~~~~d~~~~~yrI~~~~ 65 (126)
T 2jp2_A 21 VVMTRDDSSGGWFPQEGG-------GISRVGVCKVMHPEGNGRSGFLIHGER 65 (126)
T ss_dssp EEEEECTTSSSSEECSCC-------SCEEEEEECCBCTTCSSCBCEEEEEEE
T ss_pred EEeeEcCCCCCEeeCCCC-------CcccEEEEEecCCCCCCCCEEEEEEEE
Confidence 477889999999655432 112223333 4567889998865
No 282
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=25.67 E-value=58 Score=24.55 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=20.3
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeEeC
Q 044435 316 VLFQKNSKDHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 316 v~~~~~~~~~~~ydl~~~~~~~v~~~~ 342 (378)
|+.....-.++.||..+++|++.+++|
T Consensus 31 Il~~a~~v~vY~f~~~~~~W~K~~iEG 57 (134)
T 2lyd_A 31 IVDSSSHVAFYTFNSSQNEWEKTDVEG 57 (134)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred HHhhCCeEEEEEecCCcCceeEcCCcc
Confidence 444433334888899999999999987
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=24.60 E-value=4.6e+02 Score=24.90 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=46.2
Q ss_pred eEEEEEEcCCC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCC
Q 044435 173 IEATVYGLKVN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFG 249 (378)
Q Consensus 173 ~~~~vyss~~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~ 249 (378)
-.+..++..++ .|+.-... |. .....+..+|.+|. +..+ ..+.+||..+++-.. +++|...
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~---~~------~~g~~~tagglvf~-g~~d------g~l~A~D~~tG~~lW~~~~~~g~ 529 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL---PL------WAGVLATAGNLVFT-GTGD------GYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS---CC------CSCCEEETTTEEEE-ECTT------SEEEEEETTTCCEEEEEECSSCC
T ss_pred ceEEEEECCCCCEEEEecCCC---CC------cccceEeCCCEEEE-ECCC------CcEEEEECCCCCEEEEecCCCCc
Confidence 45667777665 58875332 21 11223444677776 4333 279999988765443 3677554
Q ss_pred CCCCCcccceEEEECCeEEEEEcC
Q 044435 250 NEGGGGELSGVYVLKGCLSLLCKY 273 (378)
Q Consensus 250 ~~~~~~~~~~l~~~~G~L~~~~~~ 273 (378)
... . ...+.+|++|++...
T Consensus 530 ~a~----P-~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 530 VSP----P-ITWEQDGEQYLGVTV 548 (582)
T ss_dssp CSC----C-EEEEETTEEEEEEEE
T ss_pred ccC----c-eEEEECCEEEEEEEc
Confidence 322 1 223479999888754
No 284
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=23.83 E-value=1.8e+02 Score=25.99 Aligned_cols=69 Identities=6% Similarity=-0.136 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCcE--EEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC----------CCeEEEEECC
Q 044435 265 GCLSLLCKYSEPW--DLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN----------SKDHCWYHLD 331 (378)
Q Consensus 265 G~L~~~~~~~~~l--~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~----------~~~~~~ydl~ 331 (378)
.++|+.......+ .|+++|- .++..+.+|+. .. . -+.+.++|..+++... ++.+.++|+.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~----~t~~v~~~i~vG~~--P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCA----GCGVTLGHSLGAFL--S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEET----TTTEEEEEEEECTT--C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred CeEEEECCccCCccceEEEEEC----CCCeEEEEEeCCCC--C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4566666544311 6777774 46888888988 55 2 4777788987888752 3459999999
Q ss_pred CCe-EEEEeE
Q 044435 332 MHR-VESFLV 340 (378)
Q Consensus 332 ~~~-~~~v~~ 340 (378)
+++ ...|.+
T Consensus 105 T~~vv~~I~v 114 (368)
T 1mda_H 105 TFLPIADIEL 114 (368)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEEEEEC
Confidence 988 445544
No 285
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.90 E-value=36 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHhcCCcc
Q 044435 5 KLPLDVIIDILIRLPGK 21 (378)
Q Consensus 5 ~LP~dll~~IL~rLP~~ 21 (378)
.||.|+-+|||+--...
T Consensus 23 ~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 23 QLPADIQEEILSGKSRE 39 (48)
T ss_dssp TSCHHHHHHHTTCCCSC
T ss_pred HCcHHHHHHHHhcchHH
Confidence 49999999999865543
No 286
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=21.98 E-value=5e+02 Score=24.42 Aligned_cols=191 Identities=8% Similarity=-0.040 Sum_probs=98.1
Q ss_pred ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCccc
Q 044435 114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNIK 192 (378)
Q Consensus 114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~~ 192 (378)
..+..+.+||..+++....- ..+ ......+.|.|.. .+ ++... ....+.+++..++.-.. ....
T Consensus 167 s~D~~v~lwd~~~~~~~~~l--~~H----~~~V~~v~fspdg-~~-las~s------~D~~i~lwd~~~g~~~~~~~~~- 231 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTF--GEH----TKFVHSVRYNPDG-SL-FASTG------GDGTIVLYNGVDGTKTGVFEDD- 231 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEE--CCC----SSCEEEEEECTTS-SE-EEEEE------TTSCEEEEETTTCCEEEECBCT-
T ss_pred eCCCeEEEEECCCCeEeeee--ccc----cCceEEEEECCCC-CE-EEEEE------CCCcEEEEECCCCcEeeeeccc-
Confidence 45666788887666543211 111 2234456666643 22 22222 13457788877654322 1110
Q ss_pred CCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEECCeEEE
Q 044435 193 NFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVLKGCLSL 269 (378)
Q Consensus 193 ~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~~G~L~~ 269 (378)
.+.. ......-.++.+ +|.....+..+ ..|..+|+.+.+... ++.+..... .. .-...+|...+
T Consensus 232 ~~~~--~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~l~ 298 (611)
T 1nr0_A 232 SLKN--VAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIED----QQ-LGIIWTKQALV 298 (611)
T ss_dssp TSSS--CSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGG----CE-EEEEECSSCEE
T ss_pred cccc--cccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccc----ee-EEEEEcCCEEE
Confidence 0000 000000012222 56655544444 279999998765533 343322111 11 11223666666
Q ss_pred EEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 270 LCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 270 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
....++.+.+|..+.. . ....+........-+++.++|..++-...++.+..+|+.+++...+
T Consensus 299 s~s~d~~i~~~~~~~~----~--~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 299 SISANGFINFVNPELG----S--IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp EEETTCCEEEEETTTT----E--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred EEeCCCcEEEEeCCCC----C--cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 6666678899976531 1 2222222212256677888999888787788899999998876544
No 287
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=21.96 E-value=72 Score=26.01 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=21.5
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeEeC
Q 044435 316 VLFQKNSKDHCWYHLDMHRVESFLVKG 342 (378)
Q Consensus 316 v~~~~~~~~~~~ydl~~~~~~~v~~~~ 342 (378)
|++......++.||.++++|.+.+++|
T Consensus 37 IL~~t~hasvYkfd~~~~eW~K~~~eG 63 (231)
T 1q67_A 37 LLFHTPHASLYKWDFKKDEWNKLEYQG 63 (231)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred HHhcCCeEEEEEecCCCCceEecCcEE
Confidence 445444445999999999999999887
No 288
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=21.62 E-value=4.8e+02 Score=24.11 Aligned_cols=54 Identities=11% Similarity=-0.097 Sum_probs=31.9
Q ss_pred CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCc-------------eeEEEEEEeCCCEEEEEe
Q 044435 264 KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGY-------------RVIPLAFSSRGDKVLFQK 320 (378)
Q Consensus 264 ~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~-------------~~~~~~~~~~g~~v~~~~ 320 (378)
+| .||+.....+.+.+....+. ...+++..|+. ... ..+-+.+.++|+.+++..
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~---~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNP---FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSST---TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCC---CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 55 56666655556666555432 34677777765 220 134467778898777765
No 289
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=20.92 E-value=4.3e+02 Score=23.20 Aligned_cols=149 Identities=9% Similarity=-0.015 Sum_probs=75.0
Q ss_pred EEEEEEcCC--CcEEecCcccCCCccccccccCCcceee----CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCC
Q 044435 174 EATVYGLKV--NLWRRIKNIKNFPYSWADHSYGGNGAFV----NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPG 247 (378)
Q Consensus 174 ~~~vyss~~--~~W~~~~~~~~~p~~~~~~~~~~~~v~~----~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~ 247 (378)
.+.+|+... ..|+..... +. . ..-.++++ ++.+|..+..+... ..|...+-...+|+.+..|.
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~---~~--~---~~v~~i~~dp~~~~~l~~g~~~g~~g---~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV---FL--G---HTIHHIVQDPREPERMLMAARTGHLG---PTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE---ST--T---SEEEEEEECSSSTTCEEEEEEC--CC---EEEEEESSTTSCCEECSBCC
T ss_pred ceEEEECCCCCCCceECCcc---CC--C---CceEEEEECCCCCCeEEEEecCCCCC---ccEEEeCCCCCCceECCccc
Confidence 366677655 689876321 11 0 01123444 35566554432100 14667766778999885442
Q ss_pred CCCCCC-------CcccceEEEE----CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC----------------C
Q 044435 248 FGNEGG-------GGELSGVYVL----KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE----------------N 300 (378)
Q Consensus 248 ~~~~~~-------~~~~~~l~~~----~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~----------------~ 300 (378)
...... ...+..++.. .+.|++.... -.||..++.+ .+|+.+..+.. .
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~---ggl~~S~DgG--~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP---QGLFRSTDHG--ASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET---TEEEEESSTT--SBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecC---CcEEEEcCCC--CCeEECcCccCCccccccccccccCCCC
Confidence 111000 0112124443 5677776532 2467777643 57987643211 0
Q ss_pred CceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435 301 GYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRVESF 338 (378)
Q Consensus 301 ~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~~~v 338 (378)
......+.+.+ +.+.|++......++..+-..++|+.+
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~ 214 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPL 214 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEEC
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceEC
Confidence 11233455543 233366665444588887778888876
No 290
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=20.75 E-value=1.7e+02 Score=21.76 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=23.3
Q ss_pred cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeec------CCCCeEEEEEE
Q 044435 118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDV------GSDDYKLVRIH 164 (378)
Q Consensus 118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~------~~~~ykvv~~~ 164 (378)
.+...||.|+.|..+... ......+ |+. .++.|+|++..
T Consensus 19 ~Vm~~Dd~tk~WlP~gg~-------glS~v~i-y~~~~~~~~~~~~yRIvg~r 63 (130)
T 3syx_A 19 VVMTRDDSSGGWLPLGGS-------GLSSVTV-FKVPHQEENGCADFFIRGER 63 (130)
T ss_dssp EEEEECSSSSCEEESSSS-------CCEEEEE-EEEESSSTTSSEEEEEEEEE
T ss_pred EeeeEcCCCCceEeCCCC-------CCceEEE-EeccCCCCCCCcEEEEEEEe
Confidence 367889999998765431 1222223 442 23578888864
Done!