BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044439
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AAK+GH +IV VL+K
Sbjct: 94 EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA GH +IV VL+K
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLK 68
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA GDTPL +AA +GH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 75 VNAKGD---TPLQVAAKFGHSDIVSVLIK 100
VNA+ D TPL +AA GH +IV VL+K
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLK 68
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA +GH +IV VL+K
Sbjct: 82 EIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 65 LEICPSLLLK------VNAKGDTPLQVAAKFGHSDIVSVLIK 100
LEI LL V+ G TPL +AA GH +IV VL+K
Sbjct: 48 LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA GH +IV VL++
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLR 56
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA +G TPL +AA FGH +IV VL+K
Sbjct: 94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL++AA FGH +IV VL+K
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIK---EAKSAQHGNEEPERGLKLPGR 121
+A G TPL +AA GH +IV VL+K + + H P R L G
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA FGH +IV VL+K
Sbjct: 61 EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK 101
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAKGD---TPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK D TPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA +GH +IV VL+K
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK 68
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AA FGH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQ-HGNE 110
KG+TPL +AA + H +IV VL+K H N+
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
V+ GDTPL +AA GH +IV VL+K
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+A G TPL +AA +GH +IV VL+K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHG 70
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA GDTPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+A G TPL +AA +GH +IV VL+K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHG 70
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEAKSA-------------- 105
EI+++ S VNAK G TPL AAK GH +IV +LI +
Sbjct: 84 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Query: 106 -QHGNEE 111
+HGNEE
Sbjct: 144 REHGNEE 150
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLI 99
EI+++ S VNAK G TPL AAK GH +IV +LI
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 90
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLI 99
++ G TPL AAK GH +IV +LI
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLI 57
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNA+ GDTPL +AA+ GH +IV VL+K
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLK 68
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AAK GH +IV VL+K
Sbjct: 61 EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 94 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 82 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA+ G TP +A + GH DI VL K A
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 82 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNA+ G TPL +AA FGH +IV VL+K
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLK 68
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 61 EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AAK GH +IV VL+K
Sbjct: 94 EIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIK 100
++A G+TPL + A +GH +IV VL+K
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLK 101
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA +G TPL +AA+ GH +IV VL+K
Sbjct: 94 EIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIKEAKS 104
VNAK G +PL AA+ GH+DIV++L+K S
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNE 110
+G TPL +AA+ GH+++V++L+ + + GN+
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIK 100
N K +TPL +AA+ GH+++ L++
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQ 68
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 71 LLLKVNAK-------GDTPLQVAAKFGHSDIVSVLI-KEAKSA 105
LLL+ NA G TPL +AA+ GH + V L+ KEA A
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILE 66
H N+ K NA P L +T LHI + V +E +
Sbjct: 92 HTNMVKLLLENNANPN------------LATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 67 ICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
C + KG TPL VAAK+G + +L++
Sbjct: 140 AC------MTKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEA 102
N G TPL + A+ GH + VLIK
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHG 301
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AAK+G+ +IV VL+K
Sbjct: 94 EIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ V+A G TPL +AA +GH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK 101
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIKEA 102
G TPL +AA GH +IV VL+K
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHG 70
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 14 AAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL 73
A +G E K+ I D+ + T Q T LH ++ EI+E L +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHT---------EIVEFLLQLGV 65
Query: 74 KVNAKGD---TPLQVAAKFGHSDIVSVLIKEAKSAQ 106
VN K D +PL +AA G +IV L+ K AQ
Sbjct: 66 PVNDKDDAGWSPLHIAASAGRDEIVKALL--GKGAQ 99
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 14 AAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL 73
A +G E K+ I D+ + T Q T LH ++ EI+E L +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHT---------EIVEFLLQLGV 64
Query: 74 KVNAKGD---TPLQVAAKFGHSDIVSVLIKEAKSAQ 106
VN K D +PL +AA G +IV L+ K AQ
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALL--GKGAQ 98
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA FGH +IV VL+K
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK 68
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEA 102
E++E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 94 EVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH ++V VL+K
Sbjct: 61 EIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNAK G TPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AAK GH +IV VL+K
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLK 68
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA+ G TPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA+ G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 75 VNA---KGDTPLQVAAKFGHSDIVSVLIKEA 102
VNA +G TPL +AA GH +IV VL+K
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 94 EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
V+ G TPL +AA GH +IV VL+K
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ V+A G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLI 99
VNA+ G+TPL +AAK GH++IV +L+
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 19/102 (18%)
Query: 10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTK--NTILHINITSRKRKNVSTKFIEEILEI 67
L AA G+AE KK + + + + A++K NT LH+ + EI+++
Sbjct: 13 LHNAAKNGHAEEVKKLLSKG---ADVNARSKDGNTPLHL---------AAKNGHAEIVKL 60
Query: 68 CPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEAKSAQ 106
+ VNA+ G+TP +A K GH +IV +L +AK A
Sbjct: 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL--DAKGAD 100
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA+ G TPL +AA GH +IV VL++
Sbjct: 61 EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 75 VNAKGD---TPLQVAAKFGHSDIVSVLIK 100
VNA D TPL +AAK GH +IV VL+K
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIKEAKSA----QHGN 109
+N DTPL +AA GH DIV L++ +HGN
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIKEAKSA----QHGN 109
+N DTPL +AA GH DIV L++ +HGN
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIK 100
N +G+TPL VA+K+G S+IV L++
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNAK G TPL +AA+ GH +IV VL+K
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA+ G TPL +AA GH +IV VL+K
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIK 100
++ G TPL +AA+ GH +IV VL+K
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLK 68
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEAKSA-------------- 105
E++++ S VNAK G TPL AA+ GH ++V +LI +
Sbjct: 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
Query: 106 -QHGNEE 111
+HGNEE
Sbjct: 144 REHGNEE 150
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLI 99
E++++ S VNAK G TPL AA+ GH ++V +LI
Sbjct: 51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 90
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLI 99
++ G TPL AA+ GH ++V +LI
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLI 57
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 75 VNAKGD---TPLQVAAKFGHSDIVSVLIK 100
VNA D TPL +AAK GH +IV VL+K
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL++
Sbjct: 61 EIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 75 VNAKGD---TPLQVAAKFGHSDIVSVLIK 100
VNA D TPL +AAK GH +IV VL+K
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL++
Sbjct: 61 EIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA GH +IV VL+K
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLK 68
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 63 EILEICPSLLLKVNAKGDT---PLQVAAKFGHSDIVSVLIKEA 102
EI+E+ VNA G+T PL +AA H +IV VL+K
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 69 PSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAK 103
PSL ++ +G + + +AA+FGH+ IV+ LI + +
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 14 AAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL 73
A +G + K+ I D+ + T Q T LH ++ EI+E L +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHT---------EIVEFLLQLGV 64
Query: 74 KVNAKGD---TPLQVAAKFGHSDIVSVLI 99
VN K D +PL +AA G +IV L+
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALL 93
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
+ E+L +L+ + D+PL AAK GH DIV +L+ S
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 14 AAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL 73
A +G + K+ I D+ + T Q T LH ++ EI+E L +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHT---------EIVEFLLQLGV 64
Query: 74 KVNAKGD---TPLQVAAKFGHSDIVSVLI 99
VN K D +PL +AA G +IV L+
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALL 93
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
++E+L PSLLL+ + G PL + F +I S L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 56
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK 117
I EIL L VN GD+PL +AA+ D V + + N+E E L+
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEAK 103
+A+G T L +AAK GH ++V L+ +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA GH +IV VL+K
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 63 EILEICPSLLLKVNA---KGDTPLQVAAKFGHSDIVSVLIK 100
EI+E+ VNA G TPL +AA G +IV VL+K
Sbjct: 86 EIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
++E+L PSLLL+ + G PL + F +I S L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 56
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
++E+L PSLLL+ + G PL + F +I S L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 56
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIK 100
V+A G TPL +AA GH +I VL+K
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 75 VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
VNAK G TPL +A GH +IV VL+K
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLK 68
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 15/51 (29%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEAK---------------SAQHGNEE 111
++ G TPL +AA+ GH ++V +L+ + + +HGNEE
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEA 102
++ G TPL +AA+ GH ++V +L+ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQG 60
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLIKEA 102
++ G TPL +AA+ GH ++V +L+ +
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQG 93
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 LEICPSLL---LKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
LE+ LL VNAK G TPL +AA+ GH ++V +L++
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 LEICPSLL---LKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
LE+ LL VNAK G TPL +AA+ GH ++V +L++
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 LEICPSLL---LKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
LE+ LL VNAK G TPL +AA+ GH ++V +L++
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA+ GH ++V +L++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE 23
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEAK---------------S 104
EI+++ S NAK G TPL AA+ GH +IV +L+ + +
Sbjct: 84 EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Query: 105 AQHGNEE 111
+HGNEE
Sbjct: 144 REHGNEE 150
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 63 EILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLI 99
EI+++ S NAK G TPL AA+ GH +IV +L+
Sbjct: 51 EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 76 NAKGDTPLQVAAKFGHSDIVSVLI 99
++ G TPL AA+ GH +IV +L+
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLL 57
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 LEICPSLL---LKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
LE+ LL VNAK G TPL +AA+ GH ++V +L++
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 LEICPSLL---LKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
LE+ LL VNAK G TPL +AA+ GH ++V +L++
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA+ GH ++V +L++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE 23
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 81 TPLQVAAKFGHSDIVSVLIK 100
TPL +AA GH++IV VL+K
Sbjct: 69 TPLHMAASEGHANIVEVLLK 88
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIKEAKS 104
G +PL +AA++GH VL++ S
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVS 59
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 22/103 (21%)
Query: 9 NLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSR--KRKNVSTKFIEEILE 66
+L +AA + KK + EI + Q+ T LH + S KRK V+
Sbjct: 181 SLLQAAREADLAKVKKTLAL-EIINFKQPQSHETALHCAVASLHPKRKQVA--------- 230
Query: 67 ICPSLLLK----VNAKGD---TPLQVAAKFGHSDIVSVLIKEA 102
LLL+ VN K TPL VAA+ H+D++ VL K
Sbjct: 231 ---ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 59 KFIEEILEICPSLLL-KVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQ 106
K I E L P++ L + N GDT L AA G++DIV +L+ AK A+
Sbjct: 119 KDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL--AKGAR 165
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 27/93 (29%)
Query: 23 KKDIRRDEIESLLTAQTKNTILH--INITSRKRKNVSTKFIEEILEICPSLLLK------ 74
K D+RR + NT+LH + I R+N TKF+ ++ ++ LLLK
Sbjct: 164 KADMRRQDSRG-------NTVLHALVAIADNTREN--TKFVTKMYDL---LLLKCARLFP 211
Query: 75 -------VNAKGDTPLQVAAKFGHSDIVSVLIK 100
+N G +PL +AAK G I +I+
Sbjct: 212 DSNLEAVLNNDGLSPLMMAAKTGKIGIFQHIIR 244
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
++ +LE + ++ N +G+ PL +AAK GH +V L+K S
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
++ +LE + ++ N +G+ PL +AAK GH +V L+K S
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
++ +LE + ++ N +G+ PL +AAK GH +V L+K S
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 61 IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
++ +LE + ++ N +G+ PL +AAK GH +V L+K S
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 KGDTPLQVAAKFGHSDIVSVLIKEAKS 104
+G+ PL +AAK GH +V L+K S
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIKEAKSA 105
G +PL VAA G +D++ +L+K +A
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANA 112
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 72 LLKVNAK-------GDTPLQVAAKFGHSDIVSVLIKEAKSAQHGN 109
LL NAK G+TPL A GH ++V++L++ S N
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP 69
L +AA AG+ E KK + ++T LH + +E +L+
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----VSVVEYLLQHGA 68
Query: 70 SLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+ K + G PL A +GH ++ +L+K
Sbjct: 69 DVHAK-DKGGLVPLHNACSYGHYEVAELLVKHG 100
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP 69
L +AA AG+ E KK + ++T LH + +E +L+
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----VSVVEYLLQHGA 66
Query: 70 SLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+ K + G PL A +GH ++ +L+K
Sbjct: 67 DVHAK-DKGGLVPLHNACSYGHYEVAELLVKHG 98
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 70 SLLLKVNAKGDTPLQVAAKF 89
+++LKV +KGD P+QV + +
Sbjct: 152 AVILKVTSKGDRPIQVGSHY 171
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 70 SLLLKVNAKGDTPLQVAAKF 89
+++LKV +KGD P+QV + +
Sbjct: 152 AVILKVTSKGDRPIQVGSHY 171
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 70 SLLLKVNAKGDTPLQVAAKF 89
+++LKV +KGD P+QV + +
Sbjct: 152 AVILKVTSKGDRPIQVGSHY 171
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 23 KKDIRRDEIESLLTAQTKNTILH--INITSRKRKNVSTKFIEEILEI----CPSLLLKVN 76
+ D+RR + NT+LH + I R+N TKF+ ++ ++ C L N
Sbjct: 166 QADLRRQDSRG-------NTVLHALVAIADNTREN--TKFVTKMYDLLLIKCAKLFPDTN 216
Query: 77 AK------GDTPLQVAAKFGHSDIVSVLIK 100
+ G +PL +AAK G I +I+
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 57 STKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
TK ++EIL+ + +V+ +G+TPL +A +I LI
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP 69
L +AA AG+ E KK + ++T LH + +E +L+
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----VSVVEYLLQHGA 70
Query: 70 SLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+ K + G PL A +GH ++ +L+K
Sbjct: 71 DVHAK-DKGGLVPLHNACSYGHYEVAELLVKHG 102
>pdb|3INA|A Chain A, Crystal Structure Of Heparin Lyase I H151a Mutant
Complexed With A Dodecasaccharide Heparin
Length = 378
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 34 LLTAQTKNTILHINITSRKRKNVSTKFIEEILEIC 68
+LTAQTKNT + +T R + I +I++ C
Sbjct: 1 MLTAQTKNTQTLMPLTERVNVQADSARINQIIDGC 35
>pdb|3IMN|A Chain A, Crystal Structure Of Heparin Lyase I From Bacteroides
Thetaiotaomicron
pdb|3IN9|A Chain A, Crystal Structure Of Heparin Lyase I Complexed With
Disaccharide Heparin
Length = 378
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 34 LLTAQTKNTILHINITSRKRKNVSTKFIEEILEIC 68
+LTAQTKNT + +T R + I +I++ C
Sbjct: 1 MLTAQTKNTQTLMPLTERVNVQADSARINQIIDGC 35
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 67 ICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
I ++L ++ GDT L +AA+ G+ IV L+
Sbjct: 271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA+ GH ++V +L++
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 79 GDTPLQVAAKFGHSDIVSVLIK 100
G TPL +AA+ GH ++V +L++
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From
Bacillus Stearothermophilus
Length = 587
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 30 EIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAK 88
EI LL A LHI I ++ I+EILE L++ A+GD +++ A+
Sbjct: 203 EIRELLEAHDA---LHIQIIAKIENEEGVANIDEILEAADGLMV---ARGDLGVEIPAE 255
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+++ G P+ +A + GHS +VS L E+
Sbjct: 103 LDSTGSLPIHLAIREGHSSVVSFLAPES 130
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
+++ G P+ +A + GHS +VS L E+
Sbjct: 105 LDSTGSLPIHLAIREGHSSVVSFLAPES 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,239,490
Number of Sequences: 62578
Number of extensions: 101727
Number of successful extensions: 367
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 174
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)