BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044441
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 17/241 (7%)
Query: 108 VFIKTSREIESKYLDYF--PSLMENEIVPVGPLV---QESIFKEDDTKIMDWLSQKEPWS 162
+ + T E+E + P L + + PVGPLV ++ + ++++ + WL + S
Sbjct: 210 ILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGS 269
Query: 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLR----------LHPDEKITIEEALP 212
V++VSFGS L+ ++++E+A GL SE F+ V+R + LP
Sbjct: 270 VLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLP 329
Query: 213 QGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY 272
GF E ++ +G ++ W PQA++L H GGFL+HCGW S +E +V G+P+IA P+
Sbjct: 330 PGFLERTKK--RGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYA 387
Query: 273 EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332
EQ NA ++ + PR + +RREEVARV+K ++ EEGK +R K KE+ E
Sbjct: 388 EQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAAC 447
Query: 333 R 333
R
Sbjct: 448 R 448
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 134/241 (55%), Gaps = 32/241 (13%)
Query: 108 VFIKTSREIESKYLDYFPSLMENEIVPVGPL---------------VQESIFKEDDTKIM 152
+ + T E+ES ++ S + + I P+GPL + +++KED T+ +
Sbjct: 229 ILLNTFNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKED-TECL 286
Query: 153 DWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALP 212
DWL KEP SVV+V+FGS ++ +++ E A GL + SF+ ++R PD I
Sbjct: 287 DWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR--PDLVIGGSVIFS 344
Query: 213 QGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY 272
F EI ++G L+ W PQ K+L H IGGFL+HCGW S E + GVP++ P
Sbjct: 345 SEFTNEIA--DRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFA 401
Query: 273 EQSRNAKVVVD---IGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSE 329
+Q + + + + IGM +I+ ++REE+A++I V+ ++GK++++KA E+ +
Sbjct: 402 DQPTDCRFICNEWEIGM-------EIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKK 454
Query: 330 R 330
+
Sbjct: 455 K 455
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 131/263 (49%), Gaps = 28/263 (10%)
Query: 89 NGTLNKDRNLKAF-ELSCKF-----VFIKTSREIESKYLDYFPSLMEN--EIVPVGPLV- 139
+ NKD A+ +L+ +F + + T ++E +D E I VGPL+
Sbjct: 190 DACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD 249
Query: 140 -----QESIFKEDDTKIMDWLSQKEPWSVVFVSFGS-EYFLSKDEMHEIASGLLLSEVSF 193
+ + I+ WL ++ SVVF+ FGS ++ EIA GL + S
Sbjct: 250 LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGL---KHSG 306
Query: 194 IRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWG 253
+R L + EK + P+GF E +E KGM+ GW PQ ++L H IGGF+SHCGW
Sbjct: 307 VRFLWSNSAEK----KVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWN 361
Query: 254 SAVEGMVFGVPIIAMPMVYEQSRNAKVVV---DIGMGMDVPRDKINQRLRREEVARVIKH 310
S +E M FGVPI+ P+ EQ NA +V +G+G+ V K + + EE+ + +K
Sbjct: 362 SILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKD 421
Query: 311 VLLQEEGKQIRRKAKEMSERMRR 333
L ++ + +K +EM E R
Sbjct: 422 --LMDKDSIVHKKVQEMKEMSRN 442
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 131/263 (49%), Gaps = 28/263 (10%)
Query: 89 NGTLNKDRNLKAF-ELSCKF-----VFIKTSREIESKYLDYFPSLMEN--EIVPVGPLV- 139
+ NKD A+ +L+ +F + + T ++E +D E I VGPL+
Sbjct: 190 DACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD 249
Query: 140 -----QESIFKEDDTKIMDWLSQKEPWSVVFVSFGS-EYFLSKDEMHEIASGLLLSEVSF 193
+ + I+ WL ++ SVVF+ FGS ++ EIA GL + S
Sbjct: 250 LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGL---KHSG 306
Query: 194 IRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWG 253
+R L + EK + P+GF E +E KGM+ GW PQ ++L H IGGF+SHCGW
Sbjct: 307 VRFLWSNSAEK----KVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWN 361
Query: 254 SAVEGMVFGVPIIAMPMVYEQSRNAKVVV---DIGMGMDVPRDKINQRLRREEVARVIKH 310
S +E M FGVPI+ P+ EQ NA +V +G+G+ V K + + EE+ + +K
Sbjct: 362 SILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKD 421
Query: 311 VLLQEEGKQIRRKAKEMSERMRR 333
L ++ + +K +EM E R
Sbjct: 422 --LMDKDSIVHKKVQEMKEMSRN 442
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 147 DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKIT 206
D+ ++WL Q E SVV++SFGS E+ +A L FI R P EK
Sbjct: 259 DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEK-- 316
Query: 207 IEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPII 266
LP+GF E + K + W PQ +IL+H +G FL+H GW S +E +V GVP+I
Sbjct: 317 ----LPKGFLERTKTKGK---IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMI 369
Query: 267 AMPMVYEQSRN---AKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRK 323
+ P +Q N + V++IG+G+D N L +E + + ++ + E+G +R+K
Sbjct: 370 SRPFFGDQGLNTILTESVLEIGVGVD------NGVLTKESIKKALELTMSSEKGGIMRQK 423
Query: 324 AKEMSE 329
++ E
Sbjct: 424 IVKLKE 429
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 108 VFIKTSREIESKYLDYFPSLMENEIVPVGP--LVQESIFKEDDTKIMDWLSQKEPWSVVF 165
VFI + E++ + S ++ + +GP L+ + T + WL +++P SVV+
Sbjct: 217 VFINSFEELDDSLTNDLKSKLKTYL-NIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVY 275
Query: 166 VSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKG 225
+SFG+ E+ ++ L S V FI LR +K + LP+GF E+ G
Sbjct: 276 ISFGTVTTPPPAEVVALSEALEASRVPFIWSLR----DKARVH--LPEGFLEKTR--GYG 327
Query: 226 MLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIG 285
M+V W PQA++L H +G F++HCGW S E + GVP+I P +Q N ++V D+
Sbjct: 328 MVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV- 385
Query: 286 MGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMRR 333
+++ + + +L QE+GK++R + + E R
Sbjct: 386 --LEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADR 431
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 228 VQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMG 287
V WVPQ IL + F++H G GS +E + VP++A+P + EQ+ NA+ +V++G+G
Sbjct: 309 VHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLG 366
Query: 288 MDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRK 323
+PRD++ RE V V + E +R++
Sbjct: 367 RHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQE 402
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 228 VQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMG 287
V WVPQ ILR + F++H G G + EG+ P+IA+P +Q NA ++ +G+
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA 344
Query: 288 MDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSE 329
+ ++ L RE ++ E +++RR EM++
Sbjct: 345 RKLATEEATADLLRETALALVDD---PEVARRLRRIQAEMAQ 383
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMP-MVYEQSRNAKVVVDIGMGMD 289
W+P +L H R L+H G+ +E GVP++ +P E + +A+ V+++G+G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 290 VPRDKINQRLRREEVARV 307
+ D++ RE V R+
Sbjct: 346 LRPDQLEPASIREAVERL 363
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRN 277
W+PQ +L H + F++H G E + G+P + +P+ +Q N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDV 290
WVP K+L + ++H G G+ E + +G P++ +P ++ A+ V +G+G +
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVL 361
Query: 291 PRDKIN 296
P +K +
Sbjct: 362 PGEKAD 367
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDV 290
WVP K+L + ++H G G+ E + +G P++ +P ++ A+ V +G+G +
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVL 361
Query: 291 PRDKIN 296
P +K +
Sbjct: 362 PGEKAD 367
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDV 290
W+P +L + H G G+ + + GVP +P Q N V+ +G+G D
Sbjct: 295 WIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352
Query: 291 PRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEM 327
+ E+ R++ L+E ++R++ EM
Sbjct: 353 EAGSLGA----EQCRRLLDDAGLREAALRVRQEMSEM 385
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDV 290
W+P +L + H G G+ + + GVP +P Q N V+ +G+G D
Sbjct: 295 WIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352
Query: 291 PRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEM 327
+ E+ R++ L+E ++R++ EM
Sbjct: 353 EAGSLGA----EQCRRLLDDAGLREAALRVRQEMSEM 385
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 144 FKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDE 203
+ + ++ W+ ++ + ++FG+ L + I GL L + + +L +
Sbjct: 210 YNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPN--TNTIPGGLSLLQALSQELPKLGFEV 267
Query: 204 KITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGV 263
+ + + L A+ ++ +G+L G P + I + + H G G+ + + GV
Sbjct: 268 VVAVSDKL----AQTLQPLPEGVLAAGQFPLSAIXPACDV--VVHHGGHGTTLTCLSEGV 321
Query: 264 PIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARV 307
P +++P++ E +A+++ G G++VP ++ AR+
Sbjct: 322 PQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 365
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 144 FKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDE 203
+ + ++ W+ ++ + ++FG+ L + I GL L + + +L +
Sbjct: 209 YNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPN--TNTIPGGLSLLQALSQELPKLGFEV 266
Query: 204 KITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGV 263
+ + + L A+ ++ +G+L G P + I + + H G G+ + + GV
Sbjct: 267 VVAVSDKL----AQTLQPLPEGVLAAGQFPLSAIXPACDV--VVHHGGHGTTLTCLSEGV 320
Query: 264 PIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARV 307
P +++P++ E +A+++ G G++VP ++ AR+
Sbjct: 321 PQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 364
>pdb|1E4I|A Chain A, 2-Deoxy-2-Fluoro-Beta-D-GlucosylENZYME INTERMEDIATE
Complex Of The Beta-Glucosidase From Bacillus Polymyxa
Length = 447
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 30/97 (30%)
Query: 101 FELSCKFVFIKTSREIESKYLDYFPS----LMENEIVPVGPLVQ---------------- 140
F +S +F E+ K LDY+ L +N I P L
Sbjct: 77 FSVSWPRIFPNGDGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQDAGGWGNR 136
Query: 141 ----------ESIFKEDDTKIMDWLSQKEPWSVVFVS 167
E++F+E KI WL+ EPW + F+S
Sbjct: 137 RTIQAFVQFAETMFREFHGKIQHWLTFNEPWCIAFLS 173
>pdb|1TR1|A Chain A, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|B Chain B, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|C Chain C, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|D Chain D, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
Length = 447
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 30/97 (30%)
Query: 101 FELSCKFVFIKTSREIESKYLDYFPS----LMENEIVPVGPLVQ---------------- 140
F +S +F E+ K LDY+ L +N I P L
Sbjct: 77 FSVSWPRIFPNGDGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQDAGGWGNR 136
Query: 141 ----------ESIFKEDDTKIMDWLSQKEPWSVVFVS 167
E++F+E KI WL+ EPW + F+S
Sbjct: 137 RTIQAFVQFAETMFREFHGKIQHWLTFNEPWCIAFLS 173
>pdb|1UYQ|A Chain A, Mutated B-Glucosidase A From Paenibacillus Polymyxa
Showing Increased Stability
Length = 447
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 141 ESIFKEDDTKIMDWLSQKEPWSVVFVS 167
E++F+E KI WL+ EPW + F+S
Sbjct: 147 ETMFREFHGKIQHWLTFNEPWCIAFLS 173
>pdb|1BGA|A Chain A, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|B Chain B, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|C Chain C, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|D Chain D, Beta-Glucosidase A From Bacillus Polymyxa
Length = 447
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 141 ESIFKEDDTKIMDWLSQKEPWSVVFVS 167
E++F+E KI WL+ EPW + F+S
Sbjct: 147 ETMFREFHGKIQHWLTFNEPWCIAFLS 173
>pdb|1BGG|A Chain A, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|B Chain B, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|C Chain C, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|D Chain D, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
Length = 448
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 141 ESIFKEDDTKIMDWLSQKEPWSVVFVS 167
E++F+E KI WL+ EPW + F+S
Sbjct: 148 ETMFREFHGKIQHWLTFNEPWCIAFLS 174
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 230 GWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMD 289
G+VP +L + H G GS + GVP + +P ++ A+ + G G+
Sbjct: 325 GFVPMHALLP--TCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIA 382
Query: 290 VPRDKINQRLRREEVARVI 308
+P ++ RE V RV+
Sbjct: 383 LPVPELTPDQLRESVKRVL 401
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
Length = 449
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 74 DRENKKINRFMHPTANGTLNKDRNLKAFELSCKF--VFIKTSREIESKYLDYF----PSL 127
D N + + + L KD +K + S + V + + E+ LDY+ L
Sbjct: 48 DNGNVACDSYHRVEEDVQLLKDLGVKVYRFSISWPRVLPQGTGEVNRAGLDYYHRLVDEL 107
Query: 128 MENEIVPVGPLVQ--------------------------ESIFKEDDTKIMDWLSQKEPW 161
+ N I P L E +FKE KI W++ EPW
Sbjct: 108 LANGIEPFCTLYHWDLPQALQDQGGWGSRITIDAFAEYAELMFKELGGKIKQWITFNEPW 167
Query: 162 SVVFVS 167
+ F+S
Sbjct: 168 CMAFLS 173
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 228 VQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMP 269
++ WVPQA +L H + + H G G+ + + GVP ++ P
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGM 288
GR+ + H G G+ G P I +P + +Q A V ++G+G+
Sbjct: 300 GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGM 288
GR+ + H G G+ G P + +P +Q A V D+G+G+
Sbjct: 283 GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGV 330
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 193 FIRVLRLHPDEKITIEEALPQGFAEEIERN 222
FI +LR PD + +E + +AEE+E+N
Sbjct: 824 FIELLREDPDRRAKLESLNLESYAEELEKN 853
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 193 FIRVLRLHPDEKITIEEALPQGFAEEIERN 222
FI +LR PD + +E + +AEE+E+N
Sbjct: 827 FIELLREDPDRRAKLESLNLESYAEELEKN 856
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 189 SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKG--MLVQGWVPQAKILRHGRI--- 243
S + I V R + KI ++A GF N +G +LV + ++ G+I
Sbjct: 224 SSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIV 283
Query: 244 GGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREE 303
GG + G + +E +G+P+I P ++ + + + G G +V +++ + E
Sbjct: 284 GGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEV-KNETELVTKLTE 342
Query: 304 VARVIKHVLLQEEGKQIR 321
+ V K + ++E+ ++I+
Sbjct: 343 LLSVKKEIKVEEKSREIK 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,181,519
Number of Sequences: 62578
Number of extensions: 365773
Number of successful extensions: 914
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 34
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)